-- dump date 20140619_043502 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 508767000001 SEQ_END SEQ_END NC_010723.1 3659644 3659644 DR NC_010723.1; contig end 3659644..3659644 Clostridium botulinum E3 str. Alaska E43 YP_001919466.1 CDS dnaA NC_010723.1 127 1497 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 127..1497 Clostridium botulinum E3 str. Alaska E43 6319369 YP_001919467.1 CDS dnaN NC_010723.1 1758 2858 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1758..2858 Clostridium botulinum E3 str. Alaska E43 6318307 YP_001919468.1 CDS yaaA NC_010723.1 2897 3103 D identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988; S4 domain-containing protein YaaA 2897..3103 Clostridium botulinum E3 str. Alaska E43 6319360 YP_001919469.1 CDS recF NC_010723.1 3175 4260 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3175..4260 Clostridium botulinum E3 str. Alaska E43 6320122 YP_001919470.1 CDS CLH_0005 NC_010723.1 4275 4535 D hypothetical protein 4275..4535 Clostridium botulinum E3 str. Alaska E43 6318402 YP_001919471.1 CDS gyrB NC_010723.1 4571 6478 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4571..6478 Clostridium botulinum E3 str. Alaska E43 6319263 YP_001919472.1 CDS gyrA NC_010723.1 6501 9050 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 6501..9050 Clostridium botulinum E3 str. Alaska E43 6319741 YP_001919473.1 CDS CLH_0014 NC_010723.1 14633 15136 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; putative HD domain 14633..15136 Clostridium botulinum E3 str. Alaska E43 6318330 YP_001919474.1 CDS CLH_0015 NC_010723.1 15175 15687 D identified by match to protein family HMM PF02829; match to protein family HMM PF08279; 3H domain-containing protein 15175..15687 Clostridium botulinum E3 str. Alaska E43 6318174 YP_001919475.1 CDS CLH_0016 NC_010723.1 15700 17091 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 15700..17091 Clostridium botulinum E3 str. Alaska E43 6317249 YP_001919476.1 CDS CLH_0017 NC_010723.1 17110 17346 D identified by match to protein family HMM PF07892; hypothetical protein 17110..17346 Clostridium botulinum E3 str. Alaska E43 6320077 YP_001919477.1 CDS serS NC_010723.1 17662 18939 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 17662..18939 Clostridium botulinum E3 str. Alaska E43 6317328 YP_001919478.1 CDS CLH_0023 NC_010723.1 20253 20762 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 20253..20762 Clostridium botulinum E3 str. Alaska E43 6320242 YP_001919479.1 CDS addB NC_010723.1 20801 24259 D identified by match to protein family HMM TIGR02773; ATP-dependent nuclease subunit B 20801..24259 Clostridium botulinum E3 str. Alaska E43 6318574 YP_001919480.1 CDS addA NC_010723.1 24285 28019 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; recombination helicase AddA 24285..28019 Clostridium botulinum E3 str. Alaska E43 6320299 YP_001919481.1 CDS CLH_0026 NC_010723.1 28301 29452 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(28301..29452) Clostridium botulinum E3 str. Alaska E43 6319891 YP_001919482.1 CDS CLH_0027 NC_010723.1 29608 30417 D identified by glimmer; putative; hypothetical protein 29608..30417 Clostridium botulinum E3 str. Alaska E43 6317871 YP_001919483.1 CDS CLH_0028 NC_010723.1 30475 31644 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(30475..31644) Clostridium botulinum E3 str. Alaska E43 6318903 YP_001919484.1 CDS CLH_0029 NC_010723.1 31981 32877 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase 31981..32877 Clostridium botulinum E3 str. Alaska E43 6317504 YP_001919485.1 CDS CLH_0031 NC_010723.1 33324 34463 D hypothetical protein 33324..34463 Clostridium botulinum E3 str. Alaska E43 6320243 YP_001919486.1 CDS psd NC_010723.1 34609 35499 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(34609..35499) Clostridium botulinum E3 str. Alaska E43 6317555 YP_001919487.1 CDS CLH_0033 NC_010723.1 35661 36236 D identified by match to protein family HMM PF00440; transcriptional regulator, TetR family 35661..36236 Clostridium botulinum E3 str. Alaska E43 6319470 YP_001919488.1 CDS CLH_0034 NC_010723.1 36549 38279 D identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; hydrogenase-1 36549..38279 Clostridium botulinum E3 str. Alaska E43 6318593 YP_001919489.1 CDS CLH_0035 NC_010723.1 38556 39344 D identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484; HAD-superfamily hydrolase 38556..39344 Clostridium botulinum E3 str. Alaska E43 6319965 YP_001919490.1 CDS CLH_0036 NC_010723.1 39492 41087 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(39492..41087) Clostridium botulinum E3 str. Alaska E43 6319180 YP_001919491.1 CDS CLH_0037 NC_010723.1 41578 42891 D identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 41578..42891 Clostridium botulinum E3 str. Alaska E43 6317756 YP_001919492.1 CDS CLH_0038 NC_010723.1 43066 43194 D identified by glimmer; putative; hypothetical protein 43066..43194 Clostridium botulinum E3 str. Alaska E43 6317309 YP_001919493.1 CDS CLH_0039 NC_010723.1 43383 43559 D identified by glimmer; putative; hypothetical protein 43383..43559 Clostridium botulinum E3 str. Alaska E43 6319077 YP_001919494.1 CDS CLH_0040 NC_010723.1 43571 44218 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 complement(43571..44218) Clostridium botulinum E3 str. Alaska E43 6317801 YP_001919495.1 CDS CLH_0041 NC_010723.1 44439 45020 D identified by match to protein family HMM PF08876; hypothetical protein 44439..45020 Clostridium botulinum E3 str. Alaska E43 6319571 YP_001919496.1 CDS CLH_0042 NC_010723.1 45021 46721 D isopentenyl-diphosphate delta-isomerase 45021..46721 Clostridium botulinum E3 str. Alaska E43 6319905 YP_001919497.1 CDS CLH_0043 NC_010723.1 47187 47972 D identified by glimmer; putative; hypothetical protein 47187..47972 Clostridium botulinum E3 str. Alaska E43 6317419 YP_001919498.1 CDS CLH_0044 NC_010723.1 48380 49735 R identified by match to protein family HMM PF07670; membrane protein complement(48380..49735) Clostridium botulinum E3 str. Alaska E43 6319739 YP_001919499.1 CDS CLH_0045 NC_010723.1 49985 51679 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 49985..51679 Clostridium botulinum E3 str. Alaska E43 6320081 YP_001919500.1 CDS proB NC_010723.1 51852 52661 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 51852..52661 Clostridium botulinum E3 str. Alaska E43 6317339 YP_001919501.1 CDS proA NC_010723.1 52678 53922 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 52678..53922 Clostridium botulinum E3 str. Alaska E43 6320118 YP_001919502.1 CDS CLH_0048 NC_010723.1 54052 54492 D identified by match to protein family HMM PF00583; acetyltransferase 54052..54492 Clostridium botulinum E3 str. Alaska E43 6317446 YP_001919503.1 CDS CLH_0049 NC_010723.1 54838 55344 D identified by match to protein family HMM PF03703; membrane flanked domain family 54838..55344 Clostridium botulinum E3 str. Alaska E43 6320311 YP_001919504.1 CDS CLH_0050 NC_010723.1 55322 56749 D identified by match to protein family HMM PF03703; putative membrane flanked domain family 55322..56749 Clostridium botulinum E3 str. Alaska E43 6319287 YP_001919505.1 CDS CLH_0051 NC_010723.1 56976 57746 D identified by match to protein family HMM PF00106; short chain dehydrogenase 56976..57746 Clostridium botulinum E3 str. Alaska E43 6319624 YP_001919506.1 CDS CLH_0052 NC_010723.1 58130 58942 D identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 58130..58942 Clostridium botulinum E3 str. Alaska E43 6319925 YP_001919507.1 CDS CLH_0053 NC_010723.1 59038 60495 D identified by match to protein family HMM PF00015; putative methyl-accepting chemotaxis protein 59038..60495 Clostridium botulinum E3 str. Alaska E43 6320291 YP_001919508.1 CDS carA NC_010723.1 60868 61917 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 60868..61917 Clostridium botulinum E3 str. Alaska E43 6320486 YP_001919509.1 CDS carB NC_010723.1 61932 65141 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 61932..65141 Clostridium botulinum E3 str. Alaska E43 6317529 YP_001919510.1 CDS CLH_0056 NC_010723.1 65185 66294 R identified by match to protein family HMM PF01966; HD-GYP hydrolase domain containing protein complement(65185..66294) Clostridium botulinum E3 str. Alaska E43 6319365 YP_001919511.1 CDS CLH_0057 NC_010723.1 66577 68469 R identified by match to protein family HMM PF00120; glutamine synthetase complement(66577..68469) Clostridium botulinum E3 str. Alaska E43 6318023 YP_001919512.1 CDS murI NC_010723.1 68787 69563 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 68787..69563 Clostridium botulinum E3 str. Alaska E43 6317953 YP_001919513.1 CDS CLH_0059 NC_010723.1 69704 70228 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 69704..70228 Clostridium botulinum E3 str. Alaska E43 6319080 YP_001919514.1 CDS CLH_0060 NC_010723.1 70407 70775 D hypothetical protein 70407..70775 Clostridium botulinum E3 str. Alaska E43 6319666 YP_001919515.1 CDS CLH_0061 NC_010723.1 70777 71445 D identified by match to protein family HMM PF01381; DNA-binding protein 70777..71445 Clostridium botulinum E3 str. Alaska E43 6319488 YP_001919516.1 CDS CLH_0062 NC_010723.1 71609 75205 D identified by match to protein family HMM PF00082; subtilisin like protease 71609..75205 Clostridium botulinum E3 str. Alaska E43 6317902 YP_001919517.1 CDS CLH_0063 NC_010723.1 75295 76626 D identified by match to protein family HMM PF01471; spore cortex-lytic protein 75295..76626 Clostridium botulinum E3 str. Alaska E43 6319669 YP_001919518.1 CDS CLH_0064 NC_010723.1 76667 77572 R identified by match to protein family HMM PF04055; radical SAM domain protein complement(76667..77572) Clostridium botulinum E3 str. Alaska E43 6318538 YP_001919519.1 CDS CLH_0065 NC_010723.1 77724 78782 R transporter complement(77724..78782) Clostridium botulinum E3 str. Alaska E43 6319067 YP_001919520.1 CDS CLH_0066 NC_010723.1 78917 79987 D putative lipoprotein 78917..79987 Clostridium botulinum E3 str. Alaska E43 6320565 YP_001919521.1 CDS CLH_0067 NC_010723.1 80080 81018 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein, family 80080..81018 Clostridium botulinum E3 str. Alaska E43 6319209 YP_001919522.1 CDS CLH_0068 NC_010723.1 81019 81735 D catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 81019..81735 Clostridium botulinum E3 str. Alaska E43 6318791 YP_001919523.1 CDS CLH_0069 NC_010723.1 81760 82950 R identified by match to protein family HMM PF01170; match to protein family HMM PF02475; PUA domain containing protein complement(81760..82950) Clostridium botulinum E3 str. Alaska E43 6319454 YP_001919524.1 CDS CLH_0070 NC_010723.1 83498 83707 R identified by match to protein family HMM PF04324; hypothetical protein complement(83498..83707) Clostridium botulinum E3 str. Alaska E43 6320553 YP_001919525.1 CDS CLH_0071 NC_010723.1 84214 84897 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 84214..84897 Clostridium botulinum E3 str. Alaska E43 6317285 YP_001919526.1 CDS CLH_0072 NC_010723.1 84903 86189 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 84903..86189 Clostridium botulinum E3 str. Alaska E43 6318106 YP_001919527.1 CDS CLH_0073 NC_010723.1 86484 87170 D identified by match to protein family HMM PF09359; VTC domain superfamily 86484..87170 Clostridium botulinum E3 str. Alaska E43 6320557 YP_001919528.1 CDS CLH_0074 NC_010723.1 87205 87894 D twin-arginine translocating C- subunit 87205..87894 Clostridium botulinum E3 str. Alaska E43 6319111 YP_001919529.1 CDS CLH_0075 NC_010723.1 88011 90119 D identified by match to protein family HMM PF08757; CotH protein 88011..90119 Clostridium botulinum E3 str. Alaska E43 6318191 YP_001919530.1 CDS CLH_0076 NC_010723.1 90401 92380 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 2', 3'-cuclic nucleotide 2'-phosphodiesterase 90401..92380 Clostridium botulinum E3 str. Alaska E43 6319056 YP_001919531.1 CDS CLH_0077 NC_010723.1 92583 92705 D identified by glimmer; putative; hypothetical protein 92583..92705 Clostridium botulinum E3 str. Alaska E43 6317694 YP_001919532.1 CDS ileS NC_010723.1 93183 96293 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 93183..96293 Clostridium botulinum E3 str. Alaska E43 6318276 YP_001919533.1 CDS CLH_0079 NC_010723.1 96400 97398 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 96400..97398 Clostridium botulinum E3 str. Alaska E43 6320072 YP_001919534.1 CDS CLH_0080 NC_010723.1 97693 98118 D putative viral A-type inclusion protein 97693..98118 Clostridium botulinum E3 str. Alaska E43 6318831 YP_001919535.1 CDS CLH_0081 NC_010723.1 98244 99623 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 98244..99623 Clostridium botulinum E3 str. Alaska E43 6318453 YP_001919536.1 CDS CLH_0082 NC_010723.1 99677 99862 R hypothetical protein complement(99677..99862) Clostridium botulinum E3 str. Alaska E43 6320125 YP_001919537.1 CDS CLH_0083 NC_010723.1 99972 100547 D identified by match to protein family HMM PF07670; hypothetical protein 99972..100547 Clostridium botulinum E3 str. Alaska E43 6320297 YP_001919538.1 CDS CLH_0084 NC_010723.1 100563 101090 D identified by match to protein family HMM PF07670; hypothetical protein 100563..101090 Clostridium botulinum E3 str. Alaska E43 6317963 YP_001919539.1 CDS CLH_0085 NC_010723.1 101195 101527 D hypothetical protein 101195..101527 Clostridium botulinum E3 str. Alaska E43 6319678 YP_001919540.1 CDS CLH_0086 NC_010723.1 101701 103311 D identified by match to protein family HMM PF03109; ABC1 family protein kinase 101701..103311 Clostridium botulinum E3 str. Alaska E43 6320047 YP_001919541.1 CDS CLH_0087 NC_010723.1 103872 105590 D identified by match to protein family HMM PF03553; Na+/H+ antiporter family 103872..105590 Clostridium botulinum E3 str. Alaska E43 6317895 YP_001919542.1 CDS CLH_0088 NC_010723.1 106001 107776 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Xaa-Pro aminopeptidase 1 106001..107776 Clostridium botulinum E3 str. Alaska E43 6320434 YP_001919543.1 CDS CLH_0089 NC_010723.1 107848 108345 R hypothetical protein complement(107848..108345) Clostridium botulinum E3 str. Alaska E43 6320528 YP_001919544.1 CDS CLH_0090 NC_010723.1 108445 109851 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; AAA ATPase 108445..109851 Clostridium botulinum E3 str. Alaska E43 6317914 YP_001919545.1 CDS CLH_0091 NC_010723.1 109978 110901 D hydrolase, alpha/beta fold family 109978..110901 Clostridium botulinum E3 str. Alaska E43 6319921 YP_001919546.1 CDS CLH_0092 NC_010723.1 111358 112062 D identified by match to protein family HMM PF00230; glycerol uptake facilitator protein 111358..112062 Clostridium botulinum E3 str. Alaska E43 6318192 YP_001919547.1 CDS dhaK NC_010723.1 112175 113170 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 112175..113170 Clostridium botulinum E3 str. Alaska E43 6317927 YP_001919548.1 CDS CLH_0094 NC_010723.1 113198 113836 D identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL 113198..113836 Clostridium botulinum E3 str. Alaska E43 6318808 YP_001919549.1 CDS CLH_0095 NC_010723.1 113839 114228 D identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364; PTS system mannnose-specific transporter subunit IIA 113839..114228 Clostridium botulinum E3 str. Alaska E43 6318601 YP_001919550.1 CDS metG NC_010723.1 114812 116749 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 114812..116749 Clostridium botulinum E3 str. Alaska E43 6319414 YP_001919551.1 CDS CLH_0097 NC_010723.1 117053 117850 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; putative deoxyribonuclease 117053..117850 Clostridium botulinum E3 str. Alaska E43 6318710 YP_001919552.1 CDS CLH_0098 NC_010723.1 118133 119179 D identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 118133..119179 Clostridium botulinum E3 str. Alaska E43 6317263 YP_001919553.1 CDS CLH_0099 NC_010723.1 119347 119901 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; putative primase-like protein 119347..119901 Clostridium botulinum E3 str. Alaska E43 6319297 YP_001919554.1 CDS ksgA NC_010723.1 119905 120756 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 119905..120756 Clostridium botulinum E3 str. Alaska E43 6319335 YP_001919555.1 CDS CLH_0101 NC_010723.1 120949 122385 D hypothetical protein 120949..122385 Clostridium botulinum E3 str. Alaska E43 6320001 YP_001919556.1 CDS CLH_0102 NC_010723.1 122396 122965 D hypothetical protein 122396..122965 Clostridium botulinum E3 str. Alaska E43 6318700 YP_001919557.1 CDS lgt NC_010723.1 123063 123821 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 123063..123821 Clostridium botulinum E3 str. Alaska E43 6319236 YP_001919558.1 CDS CLH_0104 NC_010723.1 123822 124655 D putative lipoprotein 123822..124655 Clostridium botulinum E3 str. Alaska E43 6319253 YP_001919559.1 CDS CLH_0105 NC_010723.1 124671 125513 D Mrp protein 124671..125513 Clostridium botulinum E3 str. Alaska E43 6320004 YP_001919560.1 CDS CLH_0106 NC_010723.1 125580 125768 D hypothetical protein 125580..125768 Clostridium botulinum E3 str. Alaska E43 6319405 YP_001919561.1 CDS CLH_0107 NC_010723.1 125928 126605 R identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ complement(125928..126605) Clostridium botulinum E3 str. Alaska E43 6318407 YP_001919562.1 CDS CLH_0108 NC_010723.1 126861 127067 R identified by glimmer; putative; hypothetical protein complement(126861..127067) Clostridium botulinum E3 str. Alaska E43 6319761 YP_001919563.1 CDS CLH_0109 NC_010723.1 127240 127692 R identified by match to protein family HMM PF03551; transcriptional regulator, PadR family complement(127240..127692) Clostridium botulinum E3 str. Alaska E43 6318715 YP_001919564.1 CDS CLH_0110 NC_010723.1 127694 128542 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(127694..128542) Clostridium botulinum E3 str. Alaska E43 6318185 YP_001919565.1 CDS nrdD NC_010723.1 128841 130946 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 128841..130946 Clostridium botulinum E3 str. Alaska E43 6318339 YP_001919566.1 CDS aksA NC_010723.1 131374 132528 D in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase 131374..132528 Clostridium botulinum E3 str. Alaska E43 6319192 YP_001919567.1 CDS CLH_0113 NC_010723.1 132706 134628 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 132706..134628 Clostridium botulinum E3 str. Alaska E43 6317449 YP_001919568.1 CDS CLH_0114 NC_010723.1 134848 137103 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative signaling protein 134848..137103 Clostridium botulinum E3 str. Alaska E43 6319387 YP_001919569.1 CDS nrdG NC_010723.1 137327 137836 D identified by match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 137327..137836 Clostridium botulinum E3 str. Alaska E43 6319826 YP_001919570.1 CDS CLH_0116 NC_010723.1 137913 138521 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 137913..138521 Clostridium botulinum E3 str. Alaska E43 6318302 YP_001919571.1 CDS CLH_0117 NC_010723.1 138994 139998 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 138994..139998 Clostridium botulinum E3 str. Alaska E43 6317510 YP_001919572.1 CDS CLH_0118 NC_010723.1 140078 141739 D identified by match to protein family HMM PF00128; oligo-1,6-glucosidase 140078..141739 Clostridium botulinum E3 str. Alaska E43 6317869 YP_001919573.1 CDS CLH_0119 NC_010723.1 141831 143111 D identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein 141831..143111 Clostridium botulinum E3 str. Alaska E43 6318213 YP_001919574.1 CDS CLH_0120 NC_010723.1 143136 143999 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 143136..143999 Clostridium botulinum E3 str. Alaska E43 6320007 YP_001919575.1 CDS CLH_0121 NC_010723.1 143999 144868 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 143999..144868 Clostridium botulinum E3 str. Alaska E43 6318251 YP_001919576.1 CDS CLH_0122 NC_010723.1 145006 145170 R identified by glimmer; putative; hypothetical protein complement(145006..145170) Clostridium botulinum E3 str. Alaska E43 6320506 YP_001919577.1 CDS CLH_0123 NC_010723.1 145335 146498 D identified by match to protein family HMM PF09587; encapsulation protein CapA 145335..146498 Clostridium botulinum E3 str. Alaska E43 6318692 YP_001919578.1 CDS CLH_0124 NC_010723.1 147624 148220 D hypothetical protein 147624..148220 Clostridium botulinum E3 str. Alaska E43 6317898 YP_001919579.1 CDS CLH_0125 NC_010723.1 148239 149084 D identified by match to protein family HMM PF05065; phage capsid family 148239..149084 Clostridium botulinum E3 str. Alaska E43 6318344 YP_001919580.1 CDS CLH_0126 NC_010723.1 149149 149556 D identified by glimmer; putative; hypothetical protein 149149..149556 Clostridium botulinum E3 str. Alaska E43 6319037 YP_001919581.1 CDS CLH_0127 NC_010723.1 149558 149803 D hypothetical protein 149558..149803 Clostridium botulinum E3 str. Alaska E43 6318669 YP_001919582.1 CDS CLH_0128 NC_010723.1 149835 150353 R identified by match to protein family HMM PF01381; dna-binding protein complement(149835..150353) Clostridium botulinum E3 str. Alaska E43 6319536 YP_001919583.1 CDS CLH_0129 NC_010723.1 150549 150740 D hypothetical protein 150549..150740 Clostridium botulinum E3 str. Alaska E43 6320317 YP_001919584.1 CDS CLH_0130 NC_010723.1 150758 152896 D identified by match to protein family HMM PF09250; match to protein family HMM TIGR01613; putative primase 150758..152896 Clostridium botulinum E3 str. Alaska E43 6318051 YP_001919585.1 CDS CLH_0131 NC_010723.1 152920 153180 D identified by glimmer; putative; hypothetical protein 152920..153180 Clostridium botulinum E3 str. Alaska E43 6319461 YP_001919586.1 CDS CLH_0132 NC_010723.1 153390 153707 D hypothetical protein 153390..153707 Clostridium botulinum E3 str. Alaska E43 6320409 YP_001919587.1 CDS CLH_0133 NC_010723.1 153822 154991 D identified by match to protein family HMM PF00589; phage integrase 153822..154991 Clostridium botulinum E3 str. Alaska E43 6317356 YP_001919588.1 CDS asnC NC_010723.1 155357 156751 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(155357..156751) Clostridium botulinum E3 str. Alaska E43 6320454 YP_001919589.1 CDS CLH_0135 NC_010723.1 157158 157856 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; Ser/Thr protein phosphatase family protein complement(157158..157856) Clostridium botulinum E3 str. Alaska E43 6318510 YP_001919590.1 CDS CLH_0136 NC_010723.1 158118 159194 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; metallopeptidase, family M24 158118..159194 Clostridium botulinum E3 str. Alaska E43 6318561 YP_001919591.1 CDS murC NC_010723.1 159299 160681 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(159299..160681) Clostridium botulinum E3 str. Alaska E43 6317907 YP_001919592.1 CDS purR NC_010723.1 160972 161787 D identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor 160972..161787 Clostridium botulinum E3 str. Alaska E43 6318535 YP_001919593.1 CDS CLH_0139 NC_010723.1 161908 162183 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 161908..162183 Clostridium botulinum E3 str. Alaska E43 6317282 YP_001919594.1 CDS glmU NC_010723.1 162371 163738 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 162371..163738 Clostridium botulinum E3 str. Alaska E43 6318189 YP_001919595.1 CDS prs NC_010723.1 163784 164743 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate diphosphokinase 163784..164743 Clostridium botulinum E3 str. Alaska E43 6318002 YP_001919596.1 CDS CLH_0142 NC_010723.1 164858 165544 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 164858..165544 Clostridium botulinum E3 str. Alaska E43 6318712 YP_001919597.1 CDS pth NC_010723.1 165625 166200 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 165625..166200 Clostridium botulinum E3 str. Alaska E43 6318265 YP_001919598.1 CDS mfd NC_010723.1 166215 169718 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 166215..169718 Clostridium botulinum E3 str. Alaska E43 6318486 YP_001919599.1 CDS prsA NC_010723.1 169854 170885 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 169854..170885 Clostridium botulinum E3 str. Alaska E43 6317278 YP_001919600.1 CDS spoVT NC_010723.1 171077 171628 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851; stage V sporulation protein T 171077..171628 Clostridium botulinum E3 str. Alaska E43 6320361 YP_001919601.1 CDS CLH_0147 NC_010723.1 171730 173265 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B 171730..173265 Clostridium botulinum E3 str. Alaska E43 6318034 YP_001919602.1 CDS CLH_0148 NC_010723.1 173280 174746 D identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 173280..174746 Clostridium botulinum E3 str. Alaska E43 6319641 YP_001919603.1 CDS hup NC_010723.1 174948 175226 D identified by match to protein family HMM PF00216; DNA-binding protein HU 174948..175226 Clostridium botulinum E3 str. Alaska E43 6320420 YP_001919604.1 CDS CLH_0150 NC_010723.1 175278 175538 D identified by match to protein family HMM PF01479; S4 domain-containing protein 175278..175538 Clostridium botulinum E3 str. Alaska E43 6318081 YP_001919605.1 CDS yabP NC_010723.1 175671 175964 D identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892; sporulation protein YabP 175671..175964 Clostridium botulinum E3 str. Alaska E43 6319943 YP_001919606.1 CDS yabQ NC_010723.1 176018 176374 D identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893; spore cortex biosynthesis protein YabQ 176018..176374 Clostridium botulinum E3 str. Alaska E43 6319008 YP_001919607.1 CDS CLH_0153 NC_010723.1 176453 176746 D identified by match to protein family HMM PF04977; cell division protein 176453..176746 Clostridium botulinum E3 str. Alaska E43 6318768 YP_001919608.1 CDS CLH_0154 NC_010723.1 176802 177218 D identified by match to protein family HMM PF00575; hypothetical protein 176802..177218 Clostridium botulinum E3 str. Alaska E43 6318031 YP_001919609.1 CDS spoIIE NC_010723.1 178680 181061 D identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865; stage II sporulation protein E 178680..181061 Clostridium botulinum E3 str. Alaska E43 6319226 YP_001919610.1 CDS CLH_0163 NC_010723.1 181200 182606 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase 181200..182606 Clostridium botulinum E3 str. Alaska E43 6318524 YP_001919611.1 CDS hpt NC_010723.1 182612 183151 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 182612..183151 Clostridium botulinum E3 str. Alaska E43 6319135 YP_001919612.1 CDS CLH_0165 NC_010723.1 183225 185030 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; Cell division protease FtsH 183225..185030 Clostridium botulinum E3 str. Alaska E43 6318787 YP_001919613.1 CDS fhs NC_010723.1 185252 186922 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 185252..186922 Clostridium botulinum E3 str. Alaska E43 6318973 YP_001919614.1 CDS CLH_0167 NC_010723.1 187044 187817 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 187044..187817 Clostridium botulinum E3 str. Alaska E43 6319549 YP_001919615.1 CDS CLH_0168 NC_010723.1 187823 188788 D identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 187823..188788 Clostridium botulinum E3 str. Alaska E43 6318515 YP_001919616.1 CDS CLH_0169 NC_010723.1 188976 189680 D hypothetical protein 188976..189680 Clostridium botulinum E3 str. Alaska E43 6318648 YP_001919617.1 CDS greA NC_010723.1 189795 190277 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 189795..190277 Clostridium botulinum E3 str. Alaska E43 6319251 YP_001919618.1 CDS lysS NC_010723.1 190322 191827 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 190322..191827 Clostridium botulinum E3 str. Alaska E43 6317444 YP_001919619.1 CDS CLH_0175 NC_010723.1 193163 193882 R identified by glimmer; putative; hypothetical protein complement(193163..193882) Clostridium botulinum E3 str. Alaska E43 6317690 YP_001919620.1 CDS CLH_0176 NC_010723.1 194016 195407 D identified by glimmer; putative; hypothetical protein 194016..195407 Clostridium botulinum E3 str. Alaska E43 6320151 YP_001919621.1 CDS CLH_0177 NC_010723.1 195440 196600 D identified by glimmer; putative; hypothetical protein 195440..196600 Clostridium botulinum E3 str. Alaska E43 6318839 YP_001919622.1 CDS CLH_0178 NC_010723.1 196622 197413 D identified by match to protein family HMM PF05738; Cna B-type domain-containing protein 196622..197413 Clostridium botulinum E3 str. Alaska E43 6319450 YP_001919623.1 CDS CLH_0179 NC_010723.1 197592 197735 D identified by glimmer; putative; hypothetical protein 197592..197735 Clostridium botulinum E3 str. Alaska E43 6318981 YP_001919624.1 CDS glyS NC_010723.1 197802 199193 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 197802..199193 Clostridium botulinum E3 str. Alaska E43 6317758 YP_001919625.1 CDS murD NC_010723.1 199381 200757 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 199381..200757 Clostridium botulinum E3 str. Alaska E43 6317782 YP_001919626.1 CDS CLH_0182 NC_010723.1 200904 201908 R putative lipoprotein complement(200904..201908) Clostridium botulinum E3 str. Alaska E43 6318855 YP_001919627.1 CDS CLH_0191 NC_010723.1 207806 208753 R identified by match to protein family HMM PF01544; magnesium and cobalt transporter complement(207806..208753) Clostridium botulinum E3 str. Alaska E43 6319403 YP_001919628.1 CDS CLH_0192 NC_010723.1 209030 209506 D hypothetical protein 209030..209506 Clostridium botulinum E3 str. Alaska E43 6320394 YP_001919629.1 CDS CLH_0193 NC_010723.1 209567 210727 R amidohydrolase complement(209567..210727) Clostridium botulinum E3 str. Alaska E43 6317856 YP_001919630.1 CDS CLH_0194 NC_010723.1 210785 210898 D identified by glimmer; putative; hypothetical protein 210785..210898 Clostridium botulinum E3 str. Alaska E43 6319222 YP_001919631.1 CDS CLH_0195 NC_010723.1 210888 211058 D putative CsfB protein 210888..211058 Clostridium botulinum E3 str. Alaska E43 6317652 YP_001919632.1 CDS CLH_0196 NC_010723.1 211211 211888 D identified by match to protein family HMM PF02223; thymidylate kinase 211211..211888 Clostridium botulinum E3 str. Alaska E43 6320179 YP_001919633.1 CDS CLH_0197 NC_010723.1 212003 212335 D identified by match to protein family HMM PF06153; protein from nitrogen regulatory protein P-II 212003..212335 Clostridium botulinum E3 str. Alaska E43 6317537 YP_001919634.1 CDS CLH_0198 NC_010723.1 212347 213279 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 212347..213279 Clostridium botulinum E3 str. Alaska E43 6320232 YP_001919635.1 CDS CLH_0199 NC_010723.1 213283 214191 D identified by match to protein family HMM PF04468; PSP1 domain-containing protein 213283..214191 Clostridium botulinum E3 str. Alaska E43 6318836 YP_001919636.1 CDS CLH_0200 NC_010723.1 214336 214506 D identified by match to protein family HMM PF00037; hypothetical protein 214336..214506 Clostridium botulinum E3 str. Alaska E43 6318871 YP_001919637.1 CDS CLH_0201 NC_010723.1 214638 215276 R hypothetical protein complement(214638..215276) Clostridium botulinum E3 str. Alaska E43 6319539 YP_001919638.1 CDS CLH_0202 NC_010723.1 215468 215923 D identified by match to protein family HMM PF05848; CtsR family transcriptional regulator 215468..215923 Clostridium botulinum E3 str. Alaska E43 6320207 YP_001919639.1 CDS CLH_0203 NC_010723.1 215938 216513 D identified by match to protein family HMM PF02151; McsA protein 215938..216513 Clostridium botulinum E3 str. Alaska E43 6317905 YP_001919640.1 CDS CLH_0204 NC_010723.1 216497 217510 D identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 216497..217510 Clostridium botulinum E3 str. Alaska E43 6319823 YP_001919641.1 CDS CLH_0205 NC_010723.1 217541 219985 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence ClpC/mecB 217541..219985 Clostridium botulinum E3 str. Alaska E43 6319500 YP_001919642.1 CDS CLH_0206 NC_010723.1 220414 221352 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; putative thioredoxin reductase 220414..221352 Clostridium botulinum E3 str. Alaska E43 6320544 YP_001919643.1 CDS CLH_0207 NC_010723.1 221354 221581 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; hypothetical protein 221354..221581 Clostridium botulinum E3 str. Alaska E43 6317612 YP_001919644.1 CDS CLH_0208 NC_010723.1 221821 222048 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; hypothetical protein complement(221821..222048) Clostridium botulinum E3 str. Alaska E43 6319875 YP_001919645.1 CDS CLH_0209 NC_010723.1 222116 222283 R identified by glimmer; putative; hypothetical protein complement(222116..222283) Clostridium botulinum E3 str. Alaska E43 6319755 YP_001919646.1 CDS radA NC_010723.1 222550 223917 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 222550..223917 Clostridium botulinum E3 str. Alaska E43 6320569 YP_001919647.1 CDS CLH_0211 NC_010723.1 223935 224999 D non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 223935..224999 Clostridium botulinum E3 str. Alaska E43 6318313 YP_001919648.1 CDS CLH_0212 NC_010723.1 225043 225441 R hypothetical protein complement(225043..225441) Clostridium botulinum E3 str. Alaska E43 6318698 YP_001919649.1 CDS CLH_0213 NC_010723.1 225704 226798 D identified by match to protein family HMM PF01850; match to protein family HMM PF01938; pin/tram domain-containing protein 225704..226798 Clostridium botulinum E3 str. Alaska E43 6320460 YP_001919650.1 CDS ispD NC_010723.1 226817 227491 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 226817..227491 Clostridium botulinum E3 str. Alaska E43 6317915 YP_001919651.1 CDS proS NC_010723.1 227814 229526 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 227814..229526 Clostridium botulinum E3 str. Alaska E43 6318469 YP_001919652.1 CDS cysS NC_010723.1 229546 230958 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 229546..230958 Clostridium botulinum E3 str. Alaska E43 6319527 YP_001919653.1 CDS CLH_0217 NC_010723.1 231008 231433 D identified by match to protein family HMM PF00636; ribonuclease III 231008..231433 Clostridium botulinum E3 str. Alaska E43 6320227 YP_001919654.1 CDS CLH_0218 NC_010723.1 231439 232311 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; TrmH family RNA methyltransferase 231439..232311 Clostridium botulinum E3 str. Alaska E43 6320147 YP_001919655.1 CDS CLH_0219 NC_010723.1 232334 232846 D identified by match to protein family HMM PF05991; tetracycline resistance protein 232334..232846 Clostridium botulinum E3 str. Alaska E43 6318867 YP_001919656.1 CDS sigH NC_010723.1 232933 233553 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 232933..233553 Clostridium botulinum E3 str. Alaska E43 6317664 YP_001919657.1 CDS tuf NC_010723.1 233765 234958 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 233765..234958 Clostridium botulinum E3 str. Alaska E43 6319404 YP_001919658.1 CDS rpmG NC_010723.1 235121 235270 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 235121..235270 Clostridium botulinum E3 str. Alaska E43 6317688 YP_001919659.1 CDS secE NC_010723.1 235320 235550 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 235320..235550 Clostridium botulinum E3 str. Alaska E43 6319162 YP_001919660.1 CDS nusG NC_010723.1 235588 236109 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 235588..236109 Clostridium botulinum E3 str. Alaska E43 6317759 YP_001919661.1 CDS rplK NC_010723.1 236187 236612 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 236187..236612 Clostridium botulinum E3 str. Alaska E43 6318333 YP_001919662.1 CDS rplA NC_010723.1 236667 237356 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 236667..237356 Clostridium botulinum E3 str. Alaska E43 6318008 YP_001919663.1 CDS rplJ NC_010723.1 237567 238070 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 237567..238070 Clostridium botulinum E3 str. Alaska E43 6318452 YP_001919664.1 CDS rplL NC_010723.1 238128 238490 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 238128..238490 Clostridium botulinum E3 str. Alaska E43 6319889 YP_001919665.1 CDS rpoB NC_010723.1 238856 242581 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 238856..242581 Clostridium botulinum E3 str. Alaska E43 6320215 YP_001919666.1 CDS rpoC NC_010723.1 242603 246136 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 242603..246136 Clostridium botulinum E3 str. Alaska E43 6319182 YP_001919667.1 CDS rpsL NC_010723.1 246433 246810 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 246433..246810 Clostridium botulinum E3 str. Alaska E43 6317283 YP_001919668.1 CDS rpsG NC_010723.1 246956 247426 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 246956..247426 Clostridium botulinum E3 str. Alaska E43 6317595 YP_001919669.1 CDS fusA NC_010723.1 247505 249571 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 247505..249571 Clostridium botulinum E3 str. Alaska E43 6320059 YP_001919670.1 CDS tuf NC_010723.1 249664 250857 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 249664..250857 Clostridium botulinum E3 str. Alaska E43 6318990 YP_001919671.1 CDS rpsJ NC_010723.1 251339 251647 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 251339..251647 Clostridium botulinum E3 str. Alaska E43 6319791 YP_001919672.1 CDS rplC NC_010723.1 251720 252349 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 251720..252349 Clostridium botulinum E3 str. Alaska E43 6319167 YP_001919673.1 CDS rplD NC_010723.1 252375 252995 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 252375..252995 Clostridium botulinum E3 str. Alaska E43 6320381 YP_001919674.1 CDS rplW NC_010723.1 252995 253291 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 252995..253291 Clostridium botulinum E3 str. Alaska E43 6317319 YP_001919675.1 CDS rplB NC_010723.1 253351 254184 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 253351..254184 Clostridium botulinum E3 str. Alaska E43 6317846 YP_001919676.1 CDS rpsS NC_010723.1 254252 254530 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 254252..254530 Clostridium botulinum E3 str. Alaska E43 6317587 YP_001919677.1 CDS rplV NC_010723.1 254551 254886 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 254551..254886 Clostridium botulinum E3 str. Alaska E43 6317452 YP_001919678.1 CDS rpsC NC_010723.1 254905 255570 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 254905..255570 Clostridium botulinum E3 str. Alaska E43 6318271 YP_001919679.1 CDS rplP NC_010723.1 255588 256022 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 255588..256022 Clostridium botulinum E3 str. Alaska E43 6317974 YP_001919680.1 CDS rpmC NC_010723.1 256022 256234 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 256022..256234 Clostridium botulinum E3 str. Alaska E43 6318471 YP_001919681.1 CDS rpsQ NC_010723.1 256258 256512 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 256258..256512 Clostridium botulinum E3 str. Alaska E43 6317872 YP_001919682.1 CDS rplN NC_010723.1 256541 256909 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 256541..256909 Clostridium botulinum E3 str. Alaska E43 6317461 YP_001919683.1 CDS rplX NC_010723.1 256925 257239 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 256925..257239 Clostridium botulinum E3 str. Alaska E43 6320337 YP_001919684.1 CDS rplE NC_010723.1 257263 257802 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 257263..257802 Clostridium botulinum E3 str. Alaska E43 6320157 YP_001919685.1 CDS rpsN NC_010723.1 257819 258004 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 257819..258004 Clostridium botulinum E3 str. Alaska E43 6317250 YP_001919686.1 CDS rpsH NC_010723.1 258035 258433 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 258035..258433 Clostridium botulinum E3 str. Alaska E43 6319421 YP_001919687.1 CDS rplF NC_010723.1 258506 259048 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 258506..259048 Clostridium botulinum E3 str. Alaska E43 6318220 YP_001919688.1 CDS rplR NC_010723.1 259067 259426 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 259067..259426 Clostridium botulinum E3 str. Alaska E43 6319968 YP_001919689.1 CDS rpsE NC_010723.1 259446 259943 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 259446..259943 Clostridium botulinum E3 str. Alaska E43 6319036 YP_001919690.1 CDS rpmD NC_010723.1 259955 260134 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 259955..260134 Clostridium botulinum E3 str. Alaska E43 6317979 YP_001919691.1 CDS rplO NC_010723.1 260158 260598 D late assembly protein; 50S ribosomal protein L15 260158..260598 Clostridium botulinum E3 str. Alaska E43 6318418 YP_001919692.1 CDS secY NC_010723.1 260600 261880 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 260600..261880 Clostridium botulinum E3 str. Alaska E43 6319043 YP_001919693.1 CDS adk NC_010723.1 261905 262552 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 261905..262552 Clostridium botulinum E3 str. Alaska E43 6318273 YP_001919694.1 CDS map NC_010723.1 262556 263305 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 262556..263305 Clostridium botulinum E3 str. Alaska E43 6319622 YP_001919695.1 CDS CLH_0260 NC_010723.1 263394 263675 D hypothetical protein 263394..263675 Clostridium botulinum E3 str. Alaska E43 6318813 YP_001919696.1 CDS infA NC_010723.1 263683 263901 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 263683..263901 Clostridium botulinum E3 str. Alaska E43 6319399 YP_001919697.1 CDS rpmJ NC_010723.1 263955 264068 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 263955..264068 Clostridium botulinum E3 str. Alaska E43 6320009 YP_001919698.1 CDS rpsM NC_010723.1 264274 264642 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 264274..264642 Clostridium botulinum E3 str. Alaska E43 6319591 YP_001919699.1 CDS rpsK NC_010723.1 264662 265054 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 264662..265054 Clostridium botulinum E3 str. Alaska E43 6319754 YP_001919700.1 CDS rpsD NC_010723.1 265082 265702 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 265082..265702 Clostridium botulinum E3 str. Alaska E43 6320275 YP_001919701.1 CDS rpoA NC_010723.1 265814 266761 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 265814..266761 Clostridium botulinum E3 str. Alaska E43 6320601 YP_001919702.1 CDS rplQ NC_010723.1 266774 267115 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 266774..267115 Clostridium botulinum E3 str. Alaska E43 6320105 YP_001919703.1 CDS CLH_0268 NC_010723.1 267368 268219 D with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 267368..268219 Clostridium botulinum E3 str. Alaska E43 6317274 YP_001919704.1 CDS cbiO NC_010723.1 268204 269061 D with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 268204..269061 Clostridium botulinum E3 str. Alaska E43 6318888 YP_001919705.1 CDS CLH_0270 NC_010723.1 269153 269956 D identified by match to protein family HMM PF02361; cobalt ABC transporter permease 269153..269956 Clostridium botulinum E3 str. Alaska E43 6317540 YP_001919706.1 CDS truA NC_010723.1 269973 270707 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 269973..270707 Clostridium botulinum E3 str. Alaska E43 6318012 YP_001919707.1 CDS rplM NC_010723.1 270867 271301 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 270867..271301 Clostridium botulinum E3 str. Alaska E43 6317867 YP_001919708.1 CDS rpsI NC_010723.1 271329 271721 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 271329..271721 Clostridium botulinum E3 str. Alaska E43 6319531 YP_001919709.1 CDS CLH_0274 NC_010723.1 272053 273666 D identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein 272053..273666 Clostridium botulinum E3 str. Alaska E43 6319063 YP_001919710.1 CDS cwlD NC_010723.1 274089 274751 D identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883; N-acetylmuramoyl-L-alanine amidase CwlD 274089..274751 Clostridium botulinum E3 str. Alaska E43 6319733 YP_001919711.1 CDS CLH_0276 NC_010723.1 274967 275734 R identified by glimmer; putative; hypothetical protein complement(274967..275734) Clostridium botulinum E3 str. Alaska E43 6319865 YP_001919712.1 CDS CLH_0277 NC_010723.1 275869 276711 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 275869..276711 Clostridium botulinum E3 str. Alaska E43 6318353 YP_001919713.1 CDS fumB NC_010723.1 277084 277641 D Catalyzes the reversible hydration of fumaric acid to yield l-malic acid; fumarate hydratase 277084..277641 Clostridium botulinum E3 str. Alaska E43 6317492 YP_001919714.1 CDS CLH_0279 NC_010723.1 277654 277782 D identified by glimmer; putative; hypothetical protein 277654..277782 Clostridium botulinum E3 str. Alaska E43 6317501 YP_001919715.1 CDS CLH_0280 NC_010723.1 278096 278953 R identified by match to protein family HMM PF02588; transporter complement(278096..278953) Clostridium botulinum E3 str. Alaska E43 6317297 YP_001919716.1 CDS CLH_0281 NC_010723.1 279215 279925 D identified by match to protein family HMM PF00515; hypothetical protein 279215..279925 Clostridium botulinum E3 str. Alaska E43 6319347 YP_001919717.1 CDS CLH_0282 NC_010723.1 280003 280695 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; regulatory protein VanR 280003..280695 Clostridium botulinum E3 str. Alaska E43 6318057 YP_001919718.1 CDS CLH_0283 NC_010723.1 280667 282523 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; two-component sensor kinase 280667..282523 Clostridium botulinum E3 str. Alaska E43 6320040 YP_001919719.1 CDS CLH_0284 NC_010723.1 282725 284950 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 282725..284950 Clostridium botulinum E3 str. Alaska E43 6318321 YP_001919720.1 CDS nrdF NC_010723.1 285165 286199 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 285165..286199 Clostridium botulinum E3 str. Alaska E43 6319270 YP_001919721.1 CDS ptsP NC_010723.1 286389 288008 D identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 286389..288008 Clostridium botulinum E3 str. Alaska E43 6318262 YP_001919722.1 CDS chrA NC_010723.1 288413 288946 D identified by match to protein family HMM PF02417; chromate transport protein 288413..288946 Clostridium botulinum E3 str. Alaska E43 6319822 YP_001919723.1 CDS CLH_0288 NC_010723.1 288950 289474 D identified by match to protein family HMM PF02417; putative chromate transport protein 288950..289474 Clostridium botulinum E3 str. Alaska E43 6319047 YP_001919724.1 CDS CLH_0289 NC_010723.1 289637 290908 D identified by match to protein family HMM PF00515; hypothetical protein 289637..290908 Clostridium botulinum E3 str. Alaska E43 6319038 YP_001919725.1 CDS iadA NC_010723.1 290952 292124 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 290952..292124 Clostridium botulinum E3 str. Alaska E43 6317403 YP_001919726.1 CDS CLH_0291 NC_010723.1 292227 292856 R identified by match to protein family HMM PF07486; spore-cortex-lytic enzyme, sleb complement(292227..292856) Clostridium botulinum E3 str. Alaska E43 6319730 YP_001919727.1 CDS CLH_0292 NC_010723.1 292926 293912 R identified by glimmer; putative; hypothetical protein complement(292926..293912) Clostridium botulinum E3 str. Alaska E43 6320189 YP_001919728.1 CDS CLH_0293 NC_010723.1 294096 294956 D identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 294096..294956 Clostridium botulinum E3 str. Alaska E43 6320405 YP_001919729.1 CDS CLH_0294 NC_010723.1 294926 296149 D identified by match to protein family HMM PF07949; hypothetical protein 294926..296149 Clostridium botulinum E3 str. Alaska E43 6320478 YP_001919730.1 CDS CLH_0295 NC_010723.1 296253 297848 D identified by match to protein family HMM PF03486; match to protein family HMM PF07992; oxidoreductase, FAD-binding 296253..297848 Clostridium botulinum E3 str. Alaska E43 6318429 YP_001919731.1 CDS ptb NC_010723.1 298022 298930 D catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 298022..298930 Clostridium botulinum E3 str. Alaska E43 6319152 YP_001919732.1 CDS buk NC_010723.1 298954 300021 D catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 298954..300021 Clostridium botulinum E3 str. Alaska E43 6317765 YP_001919733.1 CDS CLH_0298 NC_010723.1 300407 301240 D identified by match to protein family HMM PF01987; HTH DNA-binding protein 300407..301240 Clostridium botulinum E3 str. Alaska E43 6318095 YP_001919734.1 CDS CLH_0299 NC_010723.1 301323 301619 D identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; TrpR-like protein 301323..301619 Clostridium botulinum E3 str. Alaska E43 6317798 YP_001919735.1 CDS glmM NC_010723.1 301909 303252 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 301909..303252 Clostridium botulinum E3 str. Alaska E43 6319707 YP_001919736.1 CDS CLH_0301 NC_010723.1 303608 304021 D hypothetical protein 303608..304021 Clostridium botulinum E3 str. Alaska E43 6317479 YP_001919737.1 CDS ilvN NC_010723.1 304556 305065 D identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 304556..305065 Clostridium botulinum E3 str. Alaska E43 6318728 YP_001919738.1 CDS leuC NC_010723.1 305239 306498 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 305239..306498 Clostridium botulinum E3 str. Alaska E43 6318029 YP_001919739.1 CDS leuD NC_010723.1 306514 306999 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 306514..306999 Clostridium botulinum E3 str. Alaska E43 6320156 YP_001919740.1 CDS leuB NC_010723.1 307169 308251 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 307169..308251 Clostridium botulinum E3 str. Alaska E43 6320441 YP_001919741.1 CDS ilvD NC_010723.1 308258 309916 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 308258..309916 Clostridium botulinum E3 str. Alaska E43 6320254 YP_001919742.1 CDS ilvB NC_010723.1 309956 311629 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 309956..311629 Clostridium botulinum E3 str. Alaska E43 6320564 YP_001919743.1 CDS ilvC NC_010723.1 311650 312666 D identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465; ketol-acid reductoisomerase 311650..312666 Clostridium botulinum E3 str. Alaska E43 6319983 YP_001919744.1 CDS CLH_0309 NC_010723.1 312752 312871 D identified by glimmer; putative; hypothetical protein 312752..312871 Clostridium botulinum E3 str. Alaska E43 6318560 YP_001919745.1 CDS CLH_0310 NC_010723.1 312951 314840 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC-type multidrug/protein/lipid transport system, ATPase complement(312951..314840) Clostridium botulinum E3 str. Alaska E43 6320469 YP_001919746.1 CDS CLH_0311 NC_010723.1 314833 316566 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(314833..316566) Clostridium botulinum E3 str. Alaska E43 6319081 YP_001919747.1 CDS CLH_0312 NC_010723.1 316620 317063 R identified by match to protein family HMM PF01047; MarR-family transcriptional regulator complement(316620..317063) Clostridium botulinum E3 str. Alaska E43 6320435 YP_001919748.1 CDS CLH_0313 NC_010723.1 317452 317709 D identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein 317452..317709 Clostridium botulinum E3 str. Alaska E43 6319601 YP_001919749.1 CDS CLH_0314 NC_010723.1 317753 318751 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator, LacI family 317753..318751 Clostridium botulinum E3 str. Alaska E43 6318261 YP_001919750.1 CDS CLH_0315 NC_010723.1 319065 320729 D identified by match to protein family HMM PF00128; glycosyl hydrolase family protein 319065..320729 Clostridium botulinum E3 str. Alaska E43 6319097 YP_001919751.1 CDS CLH_0316 NC_010723.1 320821 322479 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003; pts system, iibc component 320821..322479 Clostridium botulinum E3 str. Alaska E43 6319907 YP_001919752.1 CDS CLH_0317 NC_010723.1 322484 323272 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 322484..323272 Clostridium botulinum E3 str. Alaska E43 6320229 YP_001919753.1 CDS CLH_0318 NC_010723.1 323315 323806 R identified by match to protein family HMM PF01047; MarR-family transcriptional regulator complement(323315..323806) Clostridium botulinum E3 str. Alaska E43 6320135 YP_001919754.1 CDS CLH_0319 NC_010723.1 324106 325332 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 324106..325332 Clostridium botulinum E3 str. Alaska E43 6320096 YP_001919755.1 CDS CLH_0320 NC_010723.1 325337 328540 D identified by match to protein family HMM PF00873; putative multidrug efflux pump, membrane protein 325337..328540 Clostridium botulinum E3 str. Alaska E43 6318414 YP_001919756.1 CDS CLH_0321 NC_010723.1 328567 329724 D putative multidrug efflux pump, outer membrane protein 328567..329724 Clostridium botulinum E3 str. Alaska E43 6319412 YP_001919757.1 CDS CLH_0322 NC_010723.1 330235 331281 D identified by match to protein family HMM PF01473; S-layer protein 330235..331281 Clostridium botulinum E3 str. Alaska E43 6317279 YP_001919758.1 CDS glmS NC_010723.1 332070 333896 D identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glutamine-fructose-6-phosphate transaminase (isomerizing) 332070..333896 Clostridium botulinum E3 str. Alaska E43 6320576 YP_001919759.1 CDS CLH_0324 NC_010723.1 334084 334758 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 334084..334758 Clostridium botulinum E3 str. Alaska E43 6317609 YP_001919760.1 CDS CLH_0325 NC_010723.1 335012 336355 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 335012..336355 Clostridium botulinum E3 str. Alaska E43 6319154 YP_001919761.1 CDS CLH_0326 NC_010723.1 336836 338359 D identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase family protein 336836..338359 Clostridium botulinum E3 str. Alaska E43 6319471 YP_001919762.1 CDS CLH_0327 NC_010723.1 338679 340091 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 338679..340091 Clostridium botulinum E3 str. Alaska E43 6318784 YP_001919763.1 CDS CLH_0328 NC_010723.1 340697 341458 D identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 340697..341458 Clostridium botulinum E3 str. Alaska E43 6320142 YP_001919764.1 CDS CLH_0329 NC_010723.1 341617 342021 D hypothetical protein 341617..342021 Clostridium botulinum E3 str. Alaska E43 6318316 YP_001919765.1 CDS CLH_0330 NC_010723.1 342099 342659 R identified by match to protein family HMM PF00484; carbonate dehydratase complement(342099..342659) Clostridium botulinum E3 str. Alaska E43 6319409 YP_001919766.1 CDS CLH_0331 NC_010723.1 342908 343489 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 342908..343489 Clostridium botulinum E3 str. Alaska E43 6319546 YP_001919767.1 CDS CLH_0332 NC_010723.1 343819 345084 D identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein 343819..345084 Clostridium botulinum E3 str. Alaska E43 6318092 YP_001919768.1 CDS thrS NC_010723.1 345312 347243 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(345312..347243) Clostridium botulinum E3 str. Alaska E43 6317613 YP_001919769.1 CDS CLH_0334 NC_010723.1 347638 348051 R hypothetical protein complement(347638..348051) Clostridium botulinum E3 str. Alaska E43 6318361 YP_001919770.1 CDS CLH_0335 NC_010723.1 348307 348867 D identified by match to protein family HMM PF04309; glycerol-3-phosphate responsive antiterminator 348307..348867 Clostridium botulinum E3 str. Alaska E43 6320005 YP_001919771.1 CDS CLH_0336 NC_010723.1 348979 350307 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 348979..350307 Clostridium botulinum E3 str. Alaska E43 6317418 YP_001919772.1 CDS CLH_0337 NC_010723.1 350737 351333 D hypothetical protein 350737..351333 Clostridium botulinum E3 str. Alaska E43 6320598 YP_001919773.1 CDS ispF NC_010723.1 351409 351882 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(351409..351882) Clostridium botulinum E3 str. Alaska E43 6317672 YP_001919774.1 CDS CLH_0339 NC_010723.1 352176 352298 D identified by glimmer; putative; hypothetical protein 352176..352298 Clostridium botulinum E3 str. Alaska E43 6318959 YP_001919775.1 CDS CLH_0340 NC_010723.1 352336 353367 D identified by glimmer; putative; hypothetical protein 352336..353367 Clostridium botulinum E3 str. Alaska E43 6319224 YP_001919776.1 CDS CLH_0341 NC_010723.1 353552 354475 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(353552..354475) Clostridium botulinum E3 str. Alaska E43 6320326 YP_001919777.1 CDS CLH_0342 NC_010723.1 354719 355438 D hypothetical protein 354719..355438 Clostridium botulinum E3 str. Alaska E43 6319809 YP_001919778.1 CDS CLH_0343 NC_010723.1 355505 356353 D identified by match to protein family HMM PF02588; transporter 355505..356353 Clostridium botulinum E3 str. Alaska E43 6317627 YP_001919779.1 CDS CLH_0344 NC_010723.1 356604 357650 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(356604..357650) Clostridium botulinum E3 str. Alaska E43 6317544 YP_001919780.1 CDS CLH_0345 NC_010723.1 357758 360427 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type complement(357758..360427) Clostridium botulinum E3 str. Alaska E43 6318911 YP_001919781.1 CDS CLH_0346 NC_010723.1 360803 361501 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; FadR family transcriptional regulator 360803..361501 Clostridium botulinum E3 str. Alaska E43 6318322 YP_001919782.1 CDS lctP NC_010723.1 361901 362167 D L-lactate permease 361901..362167 Clostridium botulinum E3 str. Alaska E43 6319692 YP_001919783.1 CDS CLH_0348 NC_010723.1 362333 363121 D identified by match to protein family HMM PF01012; electron transfer flavoprotein, beta subunit/FixA family protein 362333..363121 Clostridium botulinum E3 str. Alaska E43 6317480 YP_001919784.1 CDS CLH_0349 NC_010723.1 363224 364414 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein, alpha subunit/FixB family protein 363224..364414 Clostridium botulinum E3 str. Alaska E43 6319856 YP_001919785.1 CDS CLH_0350 NC_010723.1 364419 365822 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD/FMN-containing dehydrogenase 364419..365822 Clostridium botulinum E3 str. Alaska E43 6317574 YP_001919786.1 CDS lctP NC_010723.1 367280 367723 D L-lactate permease 367280..367723 Clostridium botulinum E3 str. Alaska E43 6318646 YP_001919787.1 CDS CLH_0354 NC_010723.1 367960 368802 D identified by match to protein family HMM PF01734; phospholipase, patatin family 367960..368802 Clostridium botulinum E3 str. Alaska E43 6317270 YP_001919788.1 CDS CLH_0355 NC_010723.1 368971 370185 D identified by match to protein family HMM PF02810; SEC-C motif domain protein 368971..370185 Clostridium botulinum E3 str. Alaska E43 6318709 YP_001919789.1 CDS CLH_0356 NC_010723.1 370400 371467 D identified by match to protein family HMM PF00483; putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 370400..371467 Clostridium botulinum E3 str. Alaska E43 6318480 YP_001919790.1 CDS CLH_0357 NC_010723.1 371741 372322 D hypothetical protein 371741..372322 Clostridium botulinum E3 str. Alaska E43 6318292 YP_001919791.1 CDS CLH_0358 NC_010723.1 372447 372812 D identified by match to protein family HMM PF01022; cadmium efflux system accessory protein 372447..372812 Clostridium botulinum E3 str. Alaska E43 6319640 YP_001919792.1 CDS cadA NC_010723.1 372830 375091 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 372830..375091 Clostridium botulinum E3 str. Alaska E43 6319562 YP_001919793.1 CDS CLH_0360 NC_010723.1 375524 376156 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 375524..376156 Clostridium botulinum E3 str. Alaska E43 6319367 YP_001919794.1 CDS crt NC_010723.1 376505 377287 D catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase 376505..377287 Clostridium botulinum E3 str. Alaska E43 6319164 YP_001919795.1 CDS CLH_0362 NC_010723.1 377368 378507 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-coa dehydrogenase, short-chain specific 377368..378507 Clostridium botulinum E3 str. Alaska E43 6319437 YP_001919796.1 CDS CLH_0363 NC_010723.1 378525 379307 D identified by match to protein family HMM PF01012; electron transfer flavoprotein, beta subunit/FixA family protein 378525..379307 Clostridium botulinum E3 str. Alaska E43 6320028 YP_001919797.1 CDS etfA NC_010723.1 379330 380337 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 379330..380337 Clostridium botulinum E3 str. Alaska E43 6320165 YP_001919798.1 CDS CLH_0365 NC_010723.1 380441 381289 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 380441..381289 Clostridium botulinum E3 str. Alaska E43 6318430 YP_001919799.1 CDS CLH_0366 NC_010723.1 381449 381883 D identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909; hypothetical protein 381449..381883 Clostridium botulinum E3 str. Alaska E43 6319439 YP_001919800.1 CDS CLH_0367 NC_010723.1 381973 382899 D identified by match to protein family HMM PF00730; match to protein family HMM PF07934; 8-oxoguanine DNA glycosylase 381973..382899 Clostridium botulinum E3 str. Alaska E43 6317475 YP_001919801.1 CDS CLH_0368 NC_010723.1 383061 384545 D identified by match to protein family HMM PF00037; match to protein family HMM PF02906; iron-dependent hydrogenase 383061..384545 Clostridium botulinum E3 str. Alaska E43 6318409 YP_001919802.1 CDS CLH_0369 NC_010723.1 384744 385439 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 384744..385439 Clostridium botulinum E3 str. Alaska E43 6319386 YP_001919803.1 CDS CLH_0370 NC_010723.1 385443 386858 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 385443..386858 Clostridium botulinum E3 str. Alaska E43 6318444 YP_001919804.1 CDS CLH_0371 NC_010723.1 386883 387722 D hypothetical protein 386883..387722 Clostridium botulinum E3 str. Alaska E43 6319196 YP_001919805.1 CDS CLH_0372 NC_010723.1 387743 388792 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 387743..388792 Clostridium botulinum E3 str. Alaska E43 6319014 YP_001919806.1 CDS groES NC_010723.1 389196 389480 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 389196..389480 Clostridium botulinum E3 str. Alaska E43 6317899 YP_001919807.1 CDS groEL NC_010723.1 389494 391116 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 389494..391116 Clostridium botulinum E3 str. Alaska E43 6317585 YP_001919808.1 CDS CLH_0375 NC_010723.1 391329 391733 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative pilin 391329..391733 Clostridium botulinum E3 str. Alaska E43 6318793 YP_001919809.1 CDS guaB NC_010723.1 392068 393522 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 392068..393522 Clostridium botulinum E3 str. Alaska E43 6318657 YP_001919810.1 CDS guaA NC_010723.1 393609 395150 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 393609..395150 Clostridium botulinum E3 str. Alaska E43 6317543 YP_001919811.1 CDS CLH_0378 NC_010723.1 395463 396626 D FliB domain-containing protein 395463..396626 Clostridium botulinum E3 str. Alaska E43 6317828 YP_001919812.1 CDS CLH_0379 NC_010723.1 396698 397543 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 396698..397543 Clostridium botulinum E3 str. Alaska E43 6320304 YP_001919813.1 CDS CLH_0380 NC_010723.1 397768 398217 D hypothetical protein 397768..398217 Clostridium botulinum E3 str. Alaska E43 6317402 YP_001919814.1 CDS CLH_0381 NC_010723.1 398531 400495 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; putative transcription antiterminator 398531..400495 Clostridium botulinum E3 str. Alaska E43 6318363 YP_001919815.1 CDS CLH_0382 NC_010723.1 400499 400915 D identified by match to protein family HMM PF06923; glucitol operon activator protein 400499..400915 Clostridium botulinum E3 str. Alaska E43 6319431 YP_001919816.1 CDS CLH_0383 NC_010723.1 400947 401507 D identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; PTS system, glucitol/sorbitol-specific, IIC component 400947..401507 Clostridium botulinum E3 str. Alaska E43 6319613 YP_001919817.1 CDS CLH_0384 NC_010723.1 401604 401975 D identified by match to protein family HMM PF03612; glucitol/sorbitol-specific phosphotransferase enzyme iib component 401604..401975 Clostridium botulinum E3 str. Alaska E43 6319383 YP_001919818.1 CDS CLH_0385 NC_010723.1 402024 402590 D identified by match to protein family HMM PF07663; PTS system, glucitol/sorbitol-specific, IIBC component 402024..402590 Clostridium botulinum E3 str. Alaska E43 6320529 YP_001919819.1 CDS CLH_0386 NC_010723.1 402637 403002 D identified by match to protein family HMM PF03829; putative PTS system, glucitol/sorbitol-specific IIA component 402637..403002 Clostridium botulinum E3 str. Alaska E43 6318182 YP_001919820.1 CDS CLH_0387 NC_010723.1 403269 404090 D Converts D-sorbitol-dphosphate to D-fructose-6-phosphate; sorbitol-6-phosphate 2-dehydrogenase 403269..404090 Clostridium botulinum E3 str. Alaska E43 6318347 YP_001919821.1 CDS CLH_0388 NC_010723.1 404250 404918 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase 404250..404918 Clostridium botulinum E3 str. Alaska E43 6319445 YP_001919822.1 CDS pgi NC_010723.1 405120 406469 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 405120..406469 Clostridium botulinum E3 str. Alaska E43 6320501 YP_001919823.1 CDS CLH_0390 NC_010723.1 406473 406919 D identified by match to protein family HMM PF02639; hypothetical protein 406473..406919 Clostridium botulinum E3 str. Alaska E43 6319989 YP_001919824.1 CDS CLH_0391 NC_010723.1 407067 409097 D identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein 407067..409097 Clostridium botulinum E3 str. Alaska E43 6317312 YP_001919825.1 CDS CLH_0392 NC_010723.1 409276 410016 D identified by match to protein family HMM PF01464; lytic murein transglycosylase 409276..410016 Clostridium botulinum E3 str. Alaska E43 6319926 YP_001919826.1 CDS CLH_0393 NC_010723.1 410232 410948 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 410232..410948 Clostridium botulinum E3 str. Alaska E43 6318539 YP_001919827.1 CDS CLH_0394 NC_010723.1 411482 413731 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 411482..413731 Clostridium botulinum E3 str. Alaska E43 6318729 YP_001919828.1 CDS ligA NC_010723.1 413814 415817 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 413814..415817 Clostridium botulinum E3 str. Alaska E43 6318821 YP_001919829.1 CDS CLH_0396 NC_010723.1 415967 416089 D identified by glimmer; putative; hypothetical protein 415967..416089 Clostridium botulinum E3 str. Alaska E43 6320578 YP_001919830.1 CDS gatC NC_010723.1 416187 416480 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 416187..416480 Clostridium botulinum E3 str. Alaska E43 6318404 YP_001919831.1 CDS gatA NC_010723.1 416499 417956 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 416499..417956 Clostridium botulinum E3 str. Alaska E43 6320305 YP_001919832.1 CDS gatB NC_010723.1 417977 419407 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 417977..419407 Clostridium botulinum E3 str. Alaska E43 6319467 YP_001919833.1 CDS CLH_0400 NC_010723.1 419468 419767 R hypothetical protein complement(419468..419767) Clostridium botulinum E3 str. Alaska E43 6318165 YP_001919834.1 CDS CLH_0401 NC_010723.1 420025 421506 D identified by match to protein family HMM PF00496; putative extracellular solute-binding protein 420025..421506 Clostridium botulinum E3 str. Alaska E43 6318939 YP_001919835.1 CDS CLH_0402 NC_010723.1 421579 423216 R hypothetical protein complement(421579..423216) Clostridium botulinum E3 str. Alaska E43 6318055 YP_001919836.1 CDS rph NC_010723.1 423461 424210 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 423461..424210 Clostridium botulinum E3 str. Alaska E43 6319100 YP_001919837.1 CDS rdgB NC_010723.1 424214 424831 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 424214..424831 Clostridium botulinum E3 str. Alaska E43 6319402 YP_001919838.1 CDS CLH_0405 NC_010723.1 424843 425322 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase, family 424843..425322 Clostridium botulinum E3 str. Alaska E43 6317734 YP_001919839.1 CDS CLH_0408 NC_010723.1 425646 425774 D identified by glimmer; putative; hypothetical protein 425646..425774 Clostridium botulinum E3 str. Alaska E43 6317698 YP_001919840.1 CDS CLH_0427 NC_010723.1 427921 428043 D identified by glimmer; putative; hypothetical protein 427921..428043 Clostridium botulinum E3 str. Alaska E43 6317943 YP_001919841.1 CDS CLH_0428 NC_010723.1 428381 428827 D identified by match to protein family HMM PF01431; endothelin-converting enzyme 1 428381..428827 Clostridium botulinum E3 str. Alaska E43 6320475 YP_001919842.1 CDS CLH_0429 NC_010723.1 428828 428962 D endothelin-converting protein 1 428828..428962 Clostridium botulinum E3 str. Alaska E43 6319686 YP_001919843.1 CDS CLH_0435 NC_010723.1 434492 435439 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 434492..435439 Clostridium botulinum E3 str. Alaska E43 6318823 YP_001919844.1 CDS CLH_0436 NC_010723.1 435541 436230 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 435541..436230 Clostridium botulinum E3 str. Alaska E43 6318509 YP_001919845.1 CDS CLH_0437 NC_010723.1 436235 437632 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; alkaline phosphatase synthesis sensor protein PhoR 436235..437632 Clostridium botulinum E3 str. Alaska E43 6318918 YP_001919846.1 CDS CLH_0438 NC_010723.1 437629 439086 D putative lipoprotein 437629..439086 Clostridium botulinum E3 str. Alaska E43 6319938 YP_001919847.1 CDS CLH_0439 NC_010723.1 439374 440756 D identified by match to protein family HMM PF01523; TldD protein 439374..440756 Clostridium botulinum E3 str. Alaska E43 6320104 YP_001919848.1 CDS CLH_0440 NC_010723.1 440760 442103 D identified by match to protein family HMM PF01523; TldD/PmbA family protein 440760..442103 Clostridium botulinum E3 str. Alaska E43 6320226 YP_001919849.1 CDS CLH_0441 NC_010723.1 442457 444307 R identified by match to protein family HMM PF00884; sulfatase complement(442457..444307) Clostridium botulinum E3 str. Alaska E43 6318379 YP_001919850.1 CDS CLH_0442 NC_010723.1 444491 445069 D hypothetical protein 444491..445069 Clostridium botulinum E3 str. Alaska E43 6317730 YP_001919851.1 CDS gidA NC_010723.1 445100 446056 D identified by match to protein family HMM PF01134; match to protein family HMM PF07992; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 445100..446056 Clostridium botulinum E3 str. Alaska E43 6318694 YP_001919852.1 CDS CLH_0443 NC_010723.1 446053 446616 R identified by match to protein family HMM PF00657; putative esterase complement(446053..446616) Clostridium botulinum E3 str. Alaska E43 6318972 YP_001919853.1 CDS CLH_0445 NC_010723.1 446630 447247 R identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA family complement(446630..447247) Clostridium botulinum E3 str. Alaska E43 6318144 YP_001919854.1 CDS CLH_0446 NC_010723.1 447563 448585 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 447563..448585 Clostridium botulinum E3 str. Alaska E43 6320021 YP_001919855.1 CDS CLH_0447 NC_010723.1 448588 449592 D hypothetical protein 448588..449592 Clostridium botulinum E3 str. Alaska E43 6320325 YP_001919856.1 CDS CLH_0448 NC_010723.1 449756 450943 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; trypsin domain-containing protein 449756..450943 Clostridium botulinum E3 str. Alaska E43 6319880 YP_001919857.1 CDS CLH_0449 NC_010723.1 451107 451526 D identified by glimmer; putative; hypothetical protein 451107..451526 Clostridium botulinum E3 str. Alaska E43 6319139 YP_001919858.1 CDS CLH_0450 NC_010723.1 451851 452933 D identified by match to protein family HMM PF04346; ethanolamine transporter 451851..452933 Clostridium botulinum E3 str. Alaska E43 6317451 YP_001919859.1 CDS CLH_0451 NC_010723.1 452959 454083 D putative lipoprotein 452959..454083 Clostridium botulinum E3 str. Alaska E43 6318391 YP_001919860.1 CDS CLH_0452 NC_010723.1 454086 455207 R identified by match to protein family HMM PF00534; mannosyltransferase B complement(454086..455207) Clostridium botulinum E3 str. Alaska E43 6318061 YP_001919861.1 CDS CLH_0453 NC_010723.1 455354 456370 D identified by match to protein family HMM TIGR02906; CotS family spore coat protein 455354..456370 Clostridium botulinum E3 str. Alaska E43 6319831 YP_001919862.1 CDS CLH_0454 NC_010723.1 456345 457115 D hypothetical protein 456345..457115 Clostridium botulinum E3 str. Alaska E43 6319426 YP_001919863.1 CDS CLH_0455 NC_010723.1 457204 458256 D identified by match to protein family HMM TIGR02906; CotS family spore coat protein 457204..458256 Clostridium botulinum E3 str. Alaska E43 6319358 YP_001919864.1 CDS CLH_0456 NC_010723.1 458450 459592 R identified by match to protein family HMM PF00534; mannosyltransferase B complement(458450..459592) Clostridium botulinum E3 str. Alaska E43 6319271 YP_001919865.1 CDS CLH_0457 NC_010723.1 459702 460703 D identified by match to protein family HMM TIGR02906; spore coat protein CotS 459702..460703 Clostridium botulinum E3 str. Alaska E43 6318653 YP_001919866.1 CDS CLH_0458 NC_010723.1 461028 461891 D identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855; sporulation peptidase YabG 461028..461891 Clostridium botulinum E3 str. Alaska E43 6320323 YP_001919867.1 CDS CLH_0459 NC_010723.1 462079 462321 D identified by match to protein family HMM PF06257; hypothetical protein 462079..462321 Clostridium botulinum E3 str. Alaska E43 6317582 YP_001919868.1 CDS CLH_0460 NC_010723.1 462735 464297 D identified by match to protein family HMM PF01476; LysM domain containing membrane protein 462735..464297 Clostridium botulinum E3 str. Alaska E43 6317696 YP_001919869.1 CDS CLH_0461 NC_010723.1 464457 465302 D identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069; cyanophycinase 464457..465302 Clostridium botulinum E3 str. Alaska E43 6320019 YP_001919870.1 CDS cphA NC_010723.1 465274 467892 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 465274..467892 Clostridium botulinum E3 str. Alaska E43 6318188 YP_001919871.1 CDS ipk NC_010723.1 468072 468914 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 468072..468914 Clostridium botulinum E3 str. Alaska E43 6319065 YP_001919872.1 CDS spoIIR NC_010723.1 468976 469602 D identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837; stage II sporulation protein R 468976..469602 Clostridium botulinum E3 str. Alaska E43 6320538 YP_001919873.1 CDS CLH_0465 NC_010723.1 469640 470632 D identified by match to protein family HMM PF02568; match to protein family HMM PF05670; argininosuccinate synthase 469640..470632 Clostridium botulinum E3 str. Alaska E43 6320531 YP_001919874.1 CDS CLH_0466 NC_010723.1 470702 471124 D identified by match to protein family HMM PF09148; hypothetical protein 470702..471124 Clostridium botulinum E3 str. Alaska E43 6320425 YP_001919875.1 CDS CLH_0467 NC_010723.1 471359 471658 D hypothetical protein 471359..471658 Clostridium botulinum E3 str. Alaska E43 6320216 YP_001919876.1 CDS pyrG NC_010723.1 471842 473443 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 471842..473443 Clostridium botulinum E3 str. Alaska E43 6319013 YP_001919877.1 CDS rho NC_010723.1 473822 475462 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 473822..475462 Clostridium botulinum E3 str. Alaska E43 6318749 YP_001919878.1 CDS CLH_0470 NC_010723.1 475511 476617 R identified by match to protein family HMM PF04101; match to protein family HMM PF06925; putative monogalactosyldiacylglycerol synthase complement(475511..476617) Clostridium botulinum E3 str. Alaska E43 6318069 YP_001919879.1 CDS rpmE NC_010723.1 476759 476968 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(476759..476968) Clostridium botulinum E3 str. Alaska E43 6320115 YP_001919880.1 CDS tdk NC_010723.1 477146 477733 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 477146..477733 Clostridium botulinum E3 str. Alaska E43 6319738 YP_001919881.1 CDS CLH_0473 NC_010723.1 477763 478671 D identified by match to protein family HMM PF07136; HemK family modification methylase 477763..478671 Clostridium botulinum E3 str. Alaska E43 6317662 YP_001919882.1 CDS hemK NC_010723.1 478661 479527 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; match to protein family HMM TIGR03534; protein-(glutamine-N5) methyltransferase 478661..479527 Clostridium botulinum E3 str. Alaska E43 6319314 YP_001919883.1 CDS prfA NC_010723.1 479796 480878 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 479796..480878 Clostridium botulinum E3 str. Alaska E43 6320033 YP_001919884.1 CDS CLH_0476 NC_010723.1 480961 481548 D hypothetical protein 480961..481548 Clostridium botulinum E3 str. Alaska E43 6320068 YP_001919885.1 CDS CLH_0477 NC_010723.1 481567 482616 D identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 481567..482616 Clostridium botulinum E3 str. Alaska E43 6319181 YP_001919886.1 CDS rpiB NC_010723.1 482739 483188 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 482739..483188 Clostridium botulinum E3 str. Alaska E43 6320560 YP_001919887.1 CDS upp NC_010723.1 483234 483863 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 483234..483863 Clostridium botulinum E3 str. Alaska E43 6317906 YP_001919888.1 CDS CLH_0480 NC_010723.1 483973 484467 D identified by match to protein family HMM PF00383; deoxycytidylate deaminase 483973..484467 Clostridium botulinum E3 str. Alaska E43 6318532 YP_001919889.1 CDS CLH_0481 NC_010723.1 484596 485744 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 484596..485744 Clostridium botulinum E3 str. Alaska E43 6317747 YP_001919890.1 CDS CLH_0482 NC_010723.1 485874 487055 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 485874..487055 Clostridium botulinum E3 str. Alaska E43 6318395 YP_001919891.1 CDS CLH_0483 NC_010723.1 487935 488300 D hypothetical protein 487935..488300 Clostridium botulinum E3 str. Alaska E43 6318097 YP_001919892.1 CDS atpB NC_010723.1 488302 488982 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 488302..488982 Clostridium botulinum E3 str. Alaska E43 6318129 YP_001919893.1 CDS atpE NC_010723.1 489014 489229 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 489014..489229 Clostridium botulinum E3 str. Alaska E43 6318153 YP_001919894.1 CDS atpF NC_010723.1 489280 489759 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B 489280..489759 Clostridium botulinum E3 str. Alaska E43 6319092 YP_001919895.1 CDS atpH NC_010723.1 489762 490301 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 489762..490301 Clostridium botulinum E3 str. Alaska E43 6317491 YP_001919896.1 CDS atpA NC_010723.1 490312 491826 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 490312..491826 Clostridium botulinum E3 str. Alaska E43 6318603 YP_001919897.1 CDS atpG NC_010723.1 491867 492718 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 491867..492718 Clostridium botulinum E3 str. Alaska E43 6319425 YP_001919898.1 CDS atpD NC_010723.1 492734 494125 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 492734..494125 Clostridium botulinum E3 str. Alaska E43 6318438 YP_001919899.1 CDS atpC NC_010723.1 494139 494543 D identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 494139..494543 Clostridium botulinum E3 str. Alaska E43 6317314 YP_001919900.1 CDS CLH_0492 NC_010723.1 494703 495341 D identified by glimmer; putative; hypothetical protein 494703..495341 Clostridium botulinum E3 str. Alaska E43 6318434 YP_001919901.1 CDS murA NC_010723.1 495399 496661 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 495399..496661 Clostridium botulinum E3 str. Alaska E43 6319813 YP_001919902.1 CDS spoIID NC_010723.1 496779 497816 D identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870; stage II sporulation protein D 496779..497816 Clostridium botulinum E3 str. Alaska E43 6318961 YP_001919903.1 CDS CLH_0495 NC_010723.1 497975 498700 D identified by match to protein family HMM PF01551; hypothetical protein 497975..498700 Clostridium botulinum E3 str. Alaska E43 6319597 YP_001919904.1 CDS spoIIID NC_010723.1 498791 499045 D identified by match to protein family HMM TIGR02844; sporulation transcriptional regulator spoiiid 498791..499045 Clostridium botulinum E3 str. Alaska E43 6319342 YP_001919905.1 CDS CLH_0497 NC_010723.1 499125 500159 D identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 499125..500159 Clostridium botulinum E3 str. Alaska E43 6318996 YP_001919906.1 CDS CLH_0498 NC_010723.1 500203 500724 R identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; putative sporulation protein YyaC complement(500203..500724) Clostridium botulinum E3 str. Alaska E43 6317916 YP_001919907.1 CDS CLH_0499 NC_010723.1 500837 501247 D identified by glimmer; putative; hypothetical protein 500837..501247 Clostridium botulinum E3 str. Alaska E43 6319828 YP_001919908.1 CDS metK NC_010723.1 502398 503573 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 502398..503573 Clostridium botulinum E3 str. Alaska E43 6317676 YP_001919909.1 CDS CLH_0508 NC_010723.1 504044 506263 D identified by match to protein family HMM TIGR01448; helicase, RecD/TraA family 504044..506263 Clostridium botulinum E3 str. Alaska E43 6317955 YP_001919910.1 CDS CLH_0509 NC_010723.1 506298 507311 D hypothetical protein 506298..507311 Clostridium botulinum E3 str. Alaska E43 6319317 YP_001919911.1 CDS CLH_0510 NC_010723.1 507287 507940 D competence protein F 507287..507940 Clostridium botulinum E3 str. Alaska E43 6319868 YP_001919912.1 CDS CLH_0511 NC_010723.1 508336 508869 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; 30S ribosomal protein S30AE family 508336..508869 Clostridium botulinum E3 str. Alaska E43 6318724 YP_001919913.1 CDS secA NC_010723.1 509202 511712 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 509202..511712 Clostridium botulinum E3 str. Alaska E43 6318199 YP_001919914.1 CDS CLH_0513 NC_010723.1 511883 512002 D identified by glimmer; putative; hypothetical protein 511883..512002 Clostridium botulinum E3 str. Alaska E43 6317816 YP_001919915.1 CDS prfB NC_010723.1 511989 513023 D catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 511989..513023 Clostridium botulinum E3 str. Alaska E43 6320344 YP_001919916.1 CDS CLH_0515 NC_010723.1 513214 514596 R identified by match to protein family HMM PF04389; aminopeptidase complement(513214..514596) Clostridium botulinum E3 str. Alaska E43 6317593 YP_001919917.1 CDS CLH_0516 NC_010723.1 514797 515141 D hypothetical protein 514797..515141 Clostridium botulinum E3 str. Alaska E43 6318289 YP_001919918.1 CDS CLH_0517 NC_010723.1 515201 515533 R identified by glimmer; putative; hypothetical protein complement(515201..515533) Clostridium botulinum E3 str. Alaska E43 6318970 YP_001919919.1 CDS CLH_0518 NC_010723.1 515869 518046 D identified by match to protein family HMM PF00575; match to protein family HMM PF09371; protein tex 515869..518046 Clostridium botulinum E3 str. Alaska E43 6319130 YP_001919920.1 CDS CLH_0519 NC_010723.1 518275 519225 D identified by match to protein family HMM PF00892; exported membrane protein 518275..519225 Clostridium botulinum E3 str. Alaska E43 6320098 YP_001919921.1 CDS CLH_0520 NC_010723.1 519413 520099 D hypothetical protein 519413..520099 Clostridium botulinum E3 str. Alaska E43 6317423 YP_001919922.1 CDS CLH_0521 NC_010723.1 520124 521197 D hypothetical protein 520124..521197 Clostridium botulinum E3 str. Alaska E43 6318614 YP_001919923.1 CDS CLH_0522 NC_010723.1 521913 522503 D riboflavin transporter 521913..522503 Clostridium botulinum E3 str. Alaska E43 6317458 YP_001919924.1 CDS rimI NC_010723.1 522538 522993 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(522538..522993) Clostridium botulinum E3 str. Alaska E43 6318834 YP_001919925.1 CDS CLH_0524 NC_010723.1 522977 523693 R identified by match to protein family HMM PF00814; glycoprotease family protein complement(522977..523693) Clostridium botulinum E3 str. Alaska E43 6319119 YP_001919926.1 CDS CLH_0525 NC_010723.1 523690 524151 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(523690..524151) Clostridium botulinum E3 str. Alaska E43 6318196 YP_001919927.1 CDS CLH_0526 NC_010723.1 524476 525342 D identified by match to protein family HMM PF01297; putative ABC transporter substrate-binding lipoprotein 524476..525342 Clostridium botulinum E3 str. Alaska E43 6318224 YP_001919928.1 CDS CLH_0530 NC_010723.1 526294 527361 R identified by match to protein family HMM PF03060; oxidoreductase, 2-nitropropane dioxygenase family complement(526294..527361) Clostridium botulinum E3 str. Alaska E43 6320271 YP_001919929.1 CDS CLH_0531 NC_010723.1 527636 527821 D identified by match to protein family HMM PF00269; hypothetical protein 527636..527821 Clostridium botulinum E3 str. Alaska E43 6319909 YP_001919930.1 CDS CLH_0532 NC_010723.1 528069 529265 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 528069..529265 Clostridium botulinum E3 str. Alaska E43 6319121 YP_001919931.1 CDS CLH_0533 NC_010723.1 529621 531993 D hypothetical protein 529621..531993 Clostridium botulinum E3 str. Alaska E43 6319548 YP_001919932.1 CDS CLH_0534 NC_010723.1 532079 532981 D identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein 532079..532981 Clostridium botulinum E3 str. Alaska E43 6319452 YP_001919933.1 CDS CLH_0535 NC_010723.1 533314 535107 D identified by match to protein family HMM PF00488; MutS domain-containing protein 533314..535107 Clostridium botulinum E3 str. Alaska E43 6320318 YP_001919934.1 CDS CLH_0536 NC_010723.1 535225 536136 D identified by match to protein family HMM PF00929; exonuclease family protein 535225..536136 Clostridium botulinum E3 str. Alaska E43 6317348 YP_001919935.1 CDS CLH_0537 NC_010723.1 536225 536662 D identified by match to protein family HMM PF00571; hypothetical protein 536225..536662 Clostridium botulinum E3 str. Alaska E43 6320453 YP_001919936.1 CDS CLH_0538 NC_010723.1 536724 537380 R hypothetical protein complement(536724..537380) Clostridium botulinum E3 str. Alaska E43 6318637 YP_001919937.1 CDS CLH_0539 NC_010723.1 537391 538044 R identified by match to protein family HMM PF04012; phage shock protein A complement(537391..538044) Clostridium botulinum E3 str. Alaska E43 6319550 YP_001919938.1 CDS CLH_0540 NC_010723.1 538079 538840 R identified by glimmer; putative; hypothetical protein complement(538079..538840) Clostridium botulinum E3 str. Alaska E43 6318167 YP_001919939.1 CDS rpsA NC_010723.1 539329 540465 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 539329..540465 Clostridium botulinum E3 str. Alaska E43 6317342 YP_001919940.1 CDS pyk NC_010723.1 540809 542227 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(540809..542227) Clostridium botulinum E3 str. Alaska E43 6319694 YP_001919941.1 CDS CLH_0543 NC_010723.1 542430 543884 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 542430..543884 Clostridium botulinum E3 str. Alaska E43 6319175 YP_001919942.1 CDS CLH_0544 NC_010723.1 544201 544713 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 544201..544713 Clostridium botulinum E3 str. Alaska E43 6319247 YP_001919943.1 CDS CLH_0545 NC_010723.1 544837 545493 D identified by match to protein family HMM PF05036; hypothetical protein 544837..545493 Clostridium botulinum E3 str. Alaska E43 6319366 YP_001919944.1 CDS maf NC_010723.1 545730 546296 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 545730..546296 Clostridium botulinum E3 str. Alaska E43 6317663 YP_001919945.1 CDS radC NC_010723.1 546341 547030 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 546341..547030 Clostridium botulinum E3 str. Alaska E43 6320432 YP_001919946.1 CDS CLH_0548 NC_010723.1 547049 548149 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 547049..548149 Clostridium botulinum E3 str. Alaska E43 6317834 YP_001919947.1 CDS mreC NC_010723.1 548153 548998 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 548153..548998 Clostridium botulinum E3 str. Alaska E43 6319804 YP_001919948.1 CDS mreD NC_010723.1 549009 549500 D identified by match to protein family HMM TIGR03426; rod shape-determining protein MreD 549009..549500 Clostridium botulinum E3 str. Alaska E43 6319947 YP_001919949.1 CDS CLH_0551 NC_010723.1 549497 552412 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding Protein dimerisation domain family 549497..552412 Clostridium botulinum E3 str. Alaska E43 6318817 YP_001919950.1 CDS minC NC_010723.1 552784 553431 D blocks the formation of polar Z-ring septums; septum formation inhibitor 552784..553431 Clostridium botulinum E3 str. Alaska E43 6317786 YP_001919951.1 CDS minD NC_010723.1 553450 554247 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 553450..554247 Clostridium botulinum E3 str. Alaska E43 6319132 YP_001919952.1 CDS minE NC_010723.1 554260 554526 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 554260..554526 Clostridium botulinum E3 str. Alaska E43 6318635 YP_001919953.1 CDS CLH_0555 NC_010723.1 554653 555786 D identified by match to protein family HMM PF01098; stage V sporulation protein E 554653..555786 Clostridium botulinum E3 str. Alaska E43 6317280 YP_001919954.1 CDS mgsA NC_010723.1 555831 556190 D identified by match to protein family HMM PF02142; match to protein family HMM TIGR00160; methylglyoxal synthase 555831..556190 Clostridium botulinum E3 str. Alaska E43 6318281 YP_001919955.1 CDS CLH_0557 NC_010723.1 556545 557342 D identified by match to protein family HMM PF01551; putative cell wall endopeptidase, family M23/M37 556545..557342 Clostridium botulinum E3 str. Alaska E43 6319001 YP_001919956.1 CDS CLH_0558 NC_010723.1 557371 558246 D identified by match to protein family HMM PF02163; sterol-regulatory element binding protein 557371..558246 Clostridium botulinum E3 str. Alaska E43 6318505 YP_001919957.1 CDS CLH_0559 NC_010723.1 558456 560309 D identified by match to protein family HMM PF04055; radical SAM domain protein 558456..560309 Clostridium botulinum E3 str. Alaska E43 6319320 YP_001919958.1 CDS CLH_0560 NC_010723.1 560293 561006 D hypothetical protein 560293..561006 Clostridium botulinum E3 str. Alaska E43 6317520 YP_001919959.1 CDS CLH_0561 NC_010723.1 561086 562534 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease, Rne/Rng family 561086..562534 Clostridium botulinum E3 str. Alaska E43 6318285 YP_001919960.1 CDS rplU NC_010723.1 562729 563040 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 562729..563040 Clostridium botulinum E3 str. Alaska E43 6318252 YP_001919961.1 CDS CLH_0563 NC_010723.1 563045 563431 D identified by match to protein family HMM PF04327; hypothetical protein 563045..563431 Clostridium botulinum E3 str. Alaska E43 6320342 YP_001919962.1 CDS rpmA NC_010723.1 563436 563735 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 563436..563735 Clostridium botulinum E3 str. Alaska E43 6318238 YP_001919963.1 CDS obgE NC_010723.1 564232 565518 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 564232..565518 Clostridium botulinum E3 str. Alaska E43 6320109 YP_001919964.1 CDS CLH_0566 NC_010723.1 565540 565836 D identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 565540..565836 Clostridium botulinum E3 str. Alaska E43 6318854 YP_001919965.1 CDS nadD NC_010723.1 566217 566819 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 566217..566819 Clostridium botulinum E3 str. Alaska E43 6317971 YP_001919966.1 CDS CLH_0568 NC_010723.1 566824 567399 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein 566824..567399 Clostridium botulinum E3 str. Alaska E43 6319310 YP_001919967.1 CDS CLH_0569 NC_010723.1 567475 568749 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; membrane-bound protein LytR 567475..568749 Clostridium botulinum E3 str. Alaska E43 6317305 YP_001919968.1 CDS CLH_0570 NC_010723.1 568877 569773 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 568877..569773 Clostridium botulinum E3 str. Alaska E43 6318014 YP_001919969.1 CDS CLH_0571 NC_010723.1 569793 571109 R identified by match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase complement(569793..571109) Clostridium botulinum E3 str. Alaska E43 6317873 YP_001919970.1 CDS CLH_0572 NC_010723.1 571337 571951 D identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; ComE operon protein 1 571337..571951 Clostridium botulinum E3 str. Alaska E43 6319490 YP_001919971.1 CDS CLH_0573 NC_010723.1 572132 572836 D putative lipoprotein 572132..572836 Clostridium botulinum E3 str. Alaska E43 6319715 YP_001919972.1 CDS CLH_0574 NC_010723.1 572862 573242 D identified by glimmer; putative; hypothetical protein 572862..573242 Clostridium botulinum E3 str. Alaska E43 6320526 YP_001919973.1 CDS rumA NC_010723.1 573259 574611 D identified by match to protein family HMM PF01938; match to protein family HMM PF05175; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 573259..574611 Clostridium botulinum E3 str. Alaska E43 6319583 YP_001919974.1 CDS CLH_0576 NC_010723.1 575254 576267 D identified by match to protein family HMM PF01497; putative iron compound ABC transporter periplasmic iron compound-binding protein 575254..576267 Clostridium botulinum E3 str. Alaska E43 6318376 YP_001919975.1 CDS CLH_0577 NC_010723.1 576290 577321 D identified by match to protein family HMM PF01032; HmuU protein 576290..577321 Clostridium botulinum E3 str. Alaska E43 6317836 YP_001919976.1 CDS CLH_0578 NC_010723.1 577321 578076 D identified by match to protein family HMM PF00005; iron chelate uptake ABC transporter, FeCT family, ATP-binding protein 577321..578076 Clostridium botulinum E3 str. Alaska E43 6320014 YP_001919977.1 CDS CLH_0579 NC_010723.1 578321 580357 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 3 578321..580357 Clostridium botulinum E3 str. Alaska E43 6317252 YP_001919978.1 CDS CLH_0580 NC_010723.1 580673 582316 D identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM PF07719; match to protein family HMM TIGR00254; putative ggdef domain-containing protein 580673..582316 Clostridium botulinum E3 str. Alaska E43 6320074 YP_001919979.1 CDS CLH_0581 NC_010723.1 582407 582571 D identified by glimmer; putative; hypothetical protein 582407..582571 Clostridium botulinum E3 str. Alaska E43 6319566 YP_001919980.1 CDS CLH_0582 NC_010723.1 582614 584356 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54-dependent transcriptional regulator YgeV 582614..584356 Clostridium botulinum E3 str. Alaska E43 6320190 YP_001919981.1 CDS CLH_0583 NC_010723.1 584737 585936 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 584737..585936 Clostridium botulinum E3 str. Alaska E43 6319581 YP_001919982.1 CDS ygeW NC_010723.1 585987 587180 D identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316; aspartate/ornithine carbamoyltransferase family protein 585987..587180 Clostridium botulinum E3 str. Alaska E43 6318173 YP_001919983.1 CDS arcC NC_010723.1 587380 588312 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 587380..588312 Clostridium botulinum E3 str. Alaska E43 6319972 YP_001919984.1 CDS dpaL NC_010723.1 588441 589649 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 588441..589649 Clostridium botulinum E3 str. Alaska E43 6317522 YP_001919985.1 CDS CLH_0587 NC_010723.1 589677 591008 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 589677..591008 Clostridium botulinum E3 str. Alaska E43 6320175 YP_001919986.1 CDS CLH_0588 NC_010723.1 591217 591366 D identified by glimmer; putative; hypothetical protein 591217..591366 Clostridium botulinum E3 str. Alaska E43 6320473 YP_001919987.1 CDS CLH_0589 NC_010723.1 591444 592805 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; hydroxydechloroatrazine ethylaminohydrolase 591444..592805 Clostridium botulinum E3 str. Alaska E43 6317741 YP_001919988.1 CDS CLH_0590 NC_010723.1 592844 593932 D identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037; dihydroorotate dehydrogenase family protein 592844..593932 Clostridium botulinum E3 str. Alaska E43 6318588 YP_001919989.1 CDS CLH_0591 NC_010723.1 594070 594447 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 594070..594447 Clostridium botulinum E3 str. Alaska E43 6318338 YP_001919990.1 CDS CLH_0592 NC_010723.1 594489 595043 D hypothetical protein 594489..595043 Clostridium botulinum E3 str. Alaska E43 6319783 YP_001919991.1 CDS hydA NC_010723.1 595103 596494 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 595103..596494 Clostridium botulinum E3 str. Alaska E43 6318703 YP_001919992.1 CDS CLH_0594 NC_010723.1 597381 598778 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease 597381..598778 Clostridium botulinum E3 str. Alaska E43 6320182 YP_001919993.1 CDS CLH_0595 NC_010723.1 598884 601445 D identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311; selenium-dependent molybdenum hydroxylase 1 598884..601445 Clostridium botulinum E3 str. Alaska E43 6318114 YP_001919994.1 CDS CLH_0596 NC_010723.1 601521 601994 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein complement(601521..601994) Clostridium botulinum E3 str. Alaska E43 6320443 YP_001919995.1 CDS CLH_0597 NC_010723.1 602624 604915 D putative molybdenum cofactor-binding protein; participates in purine salvage; xanthine dehydrogenase subunit XdhA 602624..604915 Clostridium botulinum E3 str. Alaska E43 6319264 YP_001919996.1 CDS CLH_0598 NC_010723.1 604933 605805 D FAD-binding subunit; with XdhA and XdhC participates in purine salvage; xanthine dehydrogenase subunit XdhB 604933..605805 Clostridium botulinum E3 str. Alaska E43 6317645 YP_001919997.1 CDS CLH_0599 NC_010723.1 605807 606280 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase family protein, iron-sulfur binding subunit 605807..606280 Clostridium botulinum E3 str. Alaska E43 6320124 YP_001919998.1 CDS CLH_0600 NC_010723.1 606558 607943 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease 606558..607943 Clostridium botulinum E3 str. Alaska E43 6319330 YP_001919999.1 CDS CLH_0601 NC_010723.1 608177 609208 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 608177..609208 Clostridium botulinum E3 str. Alaska E43 6318090 YP_001920000.1 CDS CLH_0602 NC_010723.1 609205 610194 D identified by match to protein family HMM PF01032; iron chelate uptake ABC transporter permease 609205..610194 Clostridium botulinum E3 str. Alaska E43 6317322 YP_001920001.1 CDS CLH_0603 NC_010723.1 610191 610970 D identified by match to protein family HMM PF00005; putative iron ABC transporter ATP-binding protein 610191..610970 Clostridium botulinum E3 str. Alaska E43 6318595 YP_001920002.1 CDS CLH_0604 NC_010723.1 611043 611858 D identified by match to protein family HMM TIGR03172; hypothetical protein 611043..611858 Clostridium botulinum E3 str. Alaska E43 6320550 YP_001920003.1 CDS CLH_0605 NC_010723.1 612002 612790 D identified by match to protein family HMM TIGR03309; selenium-dependent molybdenum hydroxylase system protein, YqeB family 612002..612790 Clostridium botulinum E3 str. Alaska E43 6318726 YP_001920004.1 CDS CLH_0606 NC_010723.1 612887 613507 D identified by match to protein family HMM TIGR03527; selenium metabolism protein YedF 612887..613507 Clostridium botulinum E3 str. Alaska E43 6318470 YP_001920005.1 CDS selD NC_010723.1 613640 614677 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 613640..614677 Clostridium botulinum E3 str. Alaska E43 6318782 YP_001920006.1 CDS CLH_0608 NC_010723.1 614921 616072 D identified by match to protein family HMM PF06050; 2-hydroxyacyl-CoA dehydratase subunit beta 614921..616072 Clostridium botulinum E3 str. Alaska E43 6319696 YP_001920007.1 CDS hgdC NC_010723.1 616118 616876 D identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 616118..616876 Clostridium botulinum E3 str. Alaska E43 6320176 YP_001920008.1 CDS CLH_0610 NC_010723.1 616935 617534 D molybdopterin-guanine dinucleotide biosynthesis protein A 616935..617534 Clostridium botulinum E3 str. Alaska E43 6319351 YP_001920009.1 CDS CLH_0611 NC_010723.1 617531 618595 D identified by match to protein family HMM PF02625; putative xanthine dehydrogenase accessory factor 617531..618595 Clostridium botulinum E3 str. Alaska E43 6319709 YP_001920010.1 CDS cbiQ NC_010723.1 618846 619658 D identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 618846..619658 Clostridium botulinum E3 str. Alaska E43 6319203 YP_001920011.1 CDS CLH_0613 NC_010723.1 619670 620503 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01166; cobalt import ATP-binding protein CbiO 619670..620503 Clostridium botulinum E3 str. Alaska E43 6319309 YP_001920012.1 CDS cbiM NC_010723.1 620930 621676 D identified by match to protein family HMM PF01891; match to protein family HMM TIGR00123; cobalamin biosynthesis protein CbiM 620930..621676 Clostridium botulinum E3 str. Alaska E43 6317364 YP_001920013.1 CDS CLH_0615 NC_010723.1 621679 621999 D identified by match to protein family HMM PF02553; cobalt/cobalamin transport protein CbiN 621679..621999 Clostridium botulinum E3 str. Alaska E43 6318926 YP_001920014.1 CDS CLH_0616 NC_010723.1 622270 622383 D identified by glimmer; putative; hypothetical protein 622270..622383 Clostridium botulinum E3 str. Alaska E43 6320223 YP_001920015.1 CDS CLH_0617 NC_010723.1 622464 622625 D identified by glimmer; putative; hypothetical protein 622464..622625 Clostridium botulinum E3 str. Alaska E43 6318943 YP_001920016.1 CDS CLH_0618 NC_010723.1 622700 622834 D identified by glimmer; putative; hypothetical protein 622700..622834 Clostridium botulinum E3 str. Alaska E43 6317477 YP_001920017.1 CDS CLH_0619 NC_010723.1 622928 623533 R identified by match to protein family HMM PF00440; TetR-family transcriptional regulator complement(622928..623533) Clostridium botulinum E3 str. Alaska E43 6317951 YP_001920018.1 CDS CLH_0620 NC_010723.1 623802 624725 D hypothetical protein 623802..624725 Clostridium botulinum E3 str. Alaska E43 6317354 YP_001920019.1 CDS CLH_0621 NC_010723.1 624804 626303 D hypothetical protein 624804..626303 Clostridium botulinum E3 str. Alaska E43 6318451 YP_001920020.1 CDS CLH_0622 NC_010723.1 626306 627460 D identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08030; putative oxidoreductase 626306..627460 Clostridium botulinum E3 str. Alaska E43 6320399 YP_001920021.1 CDS CLH_0623 NC_010723.1 627582 628748 D hypothetical protein 627582..628748 Clostridium botulinum E3 str. Alaska E43 6319285 YP_001920022.1 CDS CLH_0624 NC_010723.1 628951 630906 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; signal-transduction and transcriptional-control protein 628951..630906 Clostridium botulinum E3 str. Alaska E43 6318640 YP_001920023.1 CDS CLH_0625 NC_010723.1 631160 632233 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; oxidoreductase, zinc-binding dehydrogenase family 631160..632233 Clostridium botulinum E3 str. Alaska E43 6319637 YP_001920024.1 CDS CLH_0626 NC_010723.1 632254 633141 D identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha 632254..633141 Clostridium botulinum E3 str. Alaska E43 6320328 YP_001920025.1 CDS gltA NC_010723.1 633144 634535 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 633144..634535 Clostridium botulinum E3 str. Alaska E43 6319491 YP_001920026.1 CDS CLH_0628 NC_010723.1 634873 636582 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 634873..636582 Clostridium botulinum E3 str. Alaska E43 6319760 YP_001920027.1 CDS CLH_0629 NC_010723.1 636788 637474 D identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 636788..637474 Clostridium botulinum E3 str. Alaska E43 6319586 YP_001920028.1 CDS CLH_0630 NC_010723.1 637556 638263 D identified by match to protein family HMM PF06912; hypothetical protein 637556..638263 Clostridium botulinum E3 str. Alaska E43 6317291 YP_001920029.1 CDS CLH_0631 NC_010723.1 638577 639092 D identified by match to protein family HMM PF00583; GnaT-family acetyltransferase 638577..639092 Clostridium botulinum E3 str. Alaska E43 6320574 YP_001920030.1 CDS CLH_0632 NC_010723.1 639295 640161 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 639295..640161 Clostridium botulinum E3 str. Alaska E43 6317327 YP_001920031.1 CDS CLH_0633 NC_010723.1 640463 641188 D identified by match to protein family HMM PF00561; putative arylesterase 640463..641188 Clostridium botulinum E3 str. Alaska E43 6318786 YP_001920032.1 CDS CLH_0634 NC_010723.1 641491 642477 D identified by match to protein family HMM PF08541; match to protein family HMM PF08545; 3-oxoacyl-ACP synthase 641491..642477 Clostridium botulinum E3 str. Alaska E43 6318592 YP_001920033.1 CDS CLH_0635 NC_010723.1 642603 643391 D identified by match to protein family HMM PF01909; nucleotidyltransferase domain protein 642603..643391 Clostridium botulinum E3 str. Alaska E43 6320465 YP_001920034.1 CDS CLH_0636 NC_010723.1 643460 643642 R hypothetical protein complement(643460..643642) Clostridium botulinum E3 str. Alaska E43 6319742 YP_001920035.1 CDS CLH_0637 NC_010723.1 643754 644296 R hypothetical protein complement(643754..644296) Clostridium botulinum E3 str. Alaska E43 6319838 YP_001920036.1 CDS CLH_0638 NC_010723.1 644570 644947 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 644570..644947 Clostridium botulinum E3 str. Alaska E43 6319544 YP_001920037.1 CDS CLH_0639 NC_010723.1 645022 645777 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; putative HTH-type transcriptional regulator YciT complement(645022..645777) Clostridium botulinum E3 str. Alaska E43 6317558 YP_001920038.1 CDS CLH_0640 NC_010723.1 646215 646664 R identified by glimmer; putative; hypothetical protein complement(646215..646664) Clostridium botulinum E3 str. Alaska E43 6317515 YP_001920039.1 CDS CLH_0641 NC_010723.1 646842 647141 D hypothetical protein 646842..647141 Clostridium botulinum E3 str. Alaska E43 6318685 YP_001920040.1 CDS CLH_0642 NC_010723.1 647220 648032 R ABC transporter permease complement(647220..648032) Clostridium botulinum E3 str. Alaska E43 6317693 YP_001920041.1 CDS CLH_0643 NC_010723.1 648026 648730 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(648026..648730) Clostridium botulinum E3 str. Alaska E43 6319042 YP_001920042.1 CDS CLH_0644 NC_010723.1 648730 649098 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(648730..649098) Clostridium botulinum E3 str. Alaska E43 6320087 YP_001920043.1 CDS CLH_0645 NC_010723.1 649405 650865 D identified by match to protein family HMM PF00015; putative methyl-accepting chemotaxis sensory transducer 649405..650865 Clostridium botulinum E3 str. Alaska E43 6320302 YP_001920044.1 CDS CLH_0646 NC_010723.1 651168 652352 D identified by match to protein family HMM PF04914; match to protein family HMM PF04918; putative D-alanine transferase 651168..652352 Clostridium botulinum E3 str. Alaska E43 6317991 YP_001920045.1 CDS CLH_0647 NC_010723.1 652321 652461 D identified by glimmer; putative; hypothetical protein 652321..652461 Clostridium botulinum E3 str. Alaska E43 6318308 YP_001920046.1 CDS CLH_0648 NC_010723.1 652479 653993 D identified by match to protein family HMM PF00501; putative D-alanine-activating enzyme 652479..653993 Clostridium botulinum E3 str. Alaska E43 6317845 YP_001920047.1 CDS CLH_0649 NC_010723.1 653993 655147 D identified by match to protein family HMM PF03062; protein DltB 653993..655147 Clostridium botulinum E3 str. Alaska E43 6318946 YP_001920048.1 CDS dltC NC_010723.1 655225 655452 D identified by match to protein family HMM PF00550; match to protein family HMM TIGR01688; D-alanyl carrier protein 655225..655452 Clostridium botulinum E3 str. Alaska E43 6319699 YP_001920049.1 CDS CLH_0654 NC_010723.1 657550 658251 R identified by glimmer; putative; hypothetical protein complement(657550..658251) Clostridium botulinum E3 str. Alaska E43 6317602 YP_001920050.1 CDS CLH_0655 NC_010723.1 658647 660473 D identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 658647..660473 Clostridium botulinum E3 str. Alaska E43 6317260 YP_001920051.1 CDS CLH_0656 NC_010723.1 660681 661688 R identified by match to protein family HMM PF01408; putative oxidoreductase YgjR complement(660681..661688) Clostridium botulinum E3 str. Alaska E43 6317697 YP_001920052.1 CDS CLH_0657 NC_010723.1 662033 663244 D FliB family protein 662033..663244 Clostridium botulinum E3 str. Alaska E43 6317851 YP_001920053.1 CDS CLH_0658 NC_010723.1 663577 664125 R hypothetical protein complement(663577..664125) Clostridium botulinum E3 str. Alaska E43 6319212 YP_001920054.1 CDS CLH_0659 NC_010723.1 664334 665956 D putative lipoprotein 664334..665956 Clostridium botulinum E3 str. Alaska E43 6320071 YP_001920055.1 CDS asrA NC_010723.1 666195 667238 D identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 666195..667238 Clostridium botulinum E3 str. Alaska E43 6320187 YP_001920056.1 CDS asrB NC_010723.1 667239 668054 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 667239..668054 Clostridium botulinum E3 str. Alaska E43 6318763 YP_001920057.1 CDS asrC NC_010723.1 668068 669105 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM TIGR02912; sulfite reductase subunit C 668068..669105 Clostridium botulinum E3 str. Alaska E43 6319967 YP_001920058.1 CDS CLH_0663 NC_010723.1 669259 669936 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; hypothetical protein complement(669259..669936) Clostridium botulinum E3 str. Alaska E43 6318039 YP_001920059.1 CDS CLH_0664 NC_010723.1 670055 671248 D identified by match to protein family HMM PF07690; transporter 670055..671248 Clostridium botulinum E3 str. Alaska E43 6320614 YP_001920060.1 CDS CLH_0665 NC_010723.1 671535 672836 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(671535..672836) Clostridium botulinum E3 str. Alaska E43 6318759 YP_001920061.1 CDS CLH_0666 NC_010723.1 673028 673915 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR-family transcriptional regulator complement(673028..673915) Clostridium botulinum E3 str. Alaska E43 6319169 YP_001920062.1 CDS aroD NC_010723.1 674102 674866 D identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase 674102..674866 Clostridium botulinum E3 str. Alaska E43 6317333 YP_001920063.1 CDS aroE NC_010723.1 675002 675871 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 675002..675871 Clostridium botulinum E3 str. Alaska E43 6318833 YP_001920064.1 CDS CLH_0669 NC_010723.1 675895 677118 D identified by match to protein family HMM PF07690; inner membrane transport protein YdiN 675895..677118 Clostridium botulinum E3 str. Alaska E43 6317254 YP_001920065.1 CDS CLH_0670 NC_010723.1 677359 679347 D identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992; NADH oxidase 677359..679347 Clostridium botulinum E3 str. Alaska E43 6320307 YP_001920066.1 CDS CLH_0671 NC_010723.1 679612 680037 D identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753; flavodoxin 679612..680037 Clostridium botulinum E3 str. Alaska E43 6317668 YP_001920067.1 CDS CLH_0672 NC_010723.1 680048 680701 D hypothetical protein 680048..680701 Clostridium botulinum E3 str. Alaska E43 6317531 YP_001920068.1 CDS CLH_0673 NC_010723.1 680877 681383 R hypothetical protein complement(680877..681383) Clostridium botulinum E3 str. Alaska E43 6318914 YP_001920069.1 CDS CLH_0674 NC_010723.1 681856 682758 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD hydrolase superfamily protein 681856..682758 Clostridium botulinum E3 str. Alaska E43 6318590 YP_001920070.1 CDS CLH_0675 NC_010723.1 682779 683375 D hypothetical protein 682779..683375 Clostridium botulinum E3 str. Alaska E43 6319350 YP_001920071.1 CDS CLH_0676 NC_010723.1 683601 684434 D identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587; AP endonuclease, family 2 683601..684434 Clostridium botulinum E3 str. Alaska E43 6320330 YP_001920072.1 CDS CLH_0677 NC_010723.1 684727 685944 D identified by match to protein family HMM PF01266; putative oxidoreductase 684727..685944 Clostridium botulinum E3 str. Alaska E43 6318898 YP_001920073.1 CDS CLH_0678 NC_010723.1 686320 687558 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 686320..687558 Clostridium botulinum E3 str. Alaska E43 6320046 YP_001920074.1 CDS CLH_0679 NC_010723.1 687849 688586 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR-family transcriptional regulator 687849..688586 Clostridium botulinum E3 str. Alaska E43 6320429 YP_001920075.1 CDS nagA NC_010723.1 688610 689743 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 688610..689743 Clostridium botulinum E3 str. Alaska E43 6318297 YP_001920076.1 CDS nagB NC_010723.1 689854 690603 D identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502; glucosamine-6-phosphate isomerase 689854..690603 Clostridium botulinum E3 str. Alaska E43 6319963 YP_001920077.1 CDS nagE NC_010723.1 690650 692077 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; pts system, N-acetylglucosamine-specific iibc component 690650..692077 Clostridium botulinum E3 str. Alaska E43 6318751 YP_001920078.1 CDS CLH_0683 NC_010723.1 692185 692859 D identified by match to protein family HMM PF03932; copper homeostasis protein CutC 692185..692859 Clostridium botulinum E3 str. Alaska E43 6319886 YP_001920079.1 CDS CLH_0684 NC_010723.1 693192 693761 D identified by match to protein family HMM PF02632; BioY family protein 693192..693761 Clostridium botulinum E3 str. Alaska E43 6320545 YP_001920080.1 CDS bioB NC_010723.1 693745 694701 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 693745..694701 Clostridium botulinum E3 str. Alaska E43 6319955 YP_001920081.1 CDS bioD NC_010723.1 694704 695387 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 694704..695387 Clostridium botulinum E3 str. Alaska E43 6317970 YP_001920082.1 CDS CLH_0687 NC_010723.1 695586 696413 R identified by match to protein family HMM PF00376; multidrug-efflux transporter 2 regulator complement(695586..696413) Clostridium botulinum E3 str. Alaska E43 6318301 YP_001920083.1 CDS CLH_0688 NC_010723.1 696788 698515 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease 696788..698515 Clostridium botulinum E3 str. Alaska E43 6318041 YP_001920084.1 CDS CLH_0689 NC_010723.1 698515 700296 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; lipid A export ATP-binding/permease protein MsbA 698515..700296 Clostridium botulinum E3 str. Alaska E43 6320204 YP_001920085.1 CDS CLH_0690 NC_010723.1 700360 700932 D hypothetical protein 700360..700932 Clostridium botulinum E3 str. Alaska E43 6319567 YP_001920086.1 CDS ilvN NC_010723.1 701070 701363 R identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit complement(701070..701363) Clostridium botulinum E3 str. Alaska E43 6319665 YP_001920087.1 CDS ilvB NC_010723.1 701356 703035 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit complement(701356..703035) Clostridium botulinum E3 str. Alaska E43 6317353 YP_001920088.1 CDS CLH_0693 NC_010723.1 703579 704070 D identified by match to protein family HMM PF02559; CarD family transcriptional regulator 703579..704070 Clostridium botulinum E3 str. Alaska E43 6318244 YP_001920089.1 CDS CLH_0694 NC_010723.1 704272 704427 D hypothetical protein 704272..704427 Clostridium botulinum E3 str. Alaska E43 6319644 YP_001920090.1 CDS CLH_0695 NC_010723.1 704534 705703 R identified by match to protein family HMM PF01473; surface protein PspC complement(704534..705703) Clostridium botulinum E3 str. Alaska E43 6319837 YP_001920091.1 CDS CLH_0696 NC_010723.1 705721 711381 R identified by match to protein family HMM PF00041; match to protein family HMM PF00754; fibronectin type III domain protein complement(705721..711381) Clostridium botulinum E3 str. Alaska E43 6319824 YP_001920092.1 CDS CLH_0697 NC_010723.1 711798 713255 D identified by match to protein family HMM PF00015; putative methyl-accepting chemotaxis sensory transducer 711798..713255 Clostridium botulinum E3 str. Alaska E43 6318848 YP_001920093.1 CDS CLH_0698 NC_010723.1 713716 715371 D hypothetical protein 713716..715371 Clostridium botulinum E3 str. Alaska E43 6320336 YP_001920094.1 CDS brnQ NC_010723.1 715983 717323 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 715983..717323 Clostridium botulinum E3 str. Alaska E43 6317453 YP_001920095.1 CDS CLH_0700 NC_010723.1 717532 718212 D identified by match to protein family HMM PF00027; camp-binding domain 717532..718212 Clostridium botulinum E3 str. Alaska E43 6319245 YP_001920096.1 CDS CLH_0701 NC_010723.1 718431 719210 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; deoxyribose operon repressor complement(718431..719210) Clostridium botulinum E3 str. Alaska E43 6319675 YP_001920097.1 CDS deoC NC_010723.1 719505 720170 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 719505..720170 Clostridium botulinum E3 str. Alaska E43 6318556 YP_001920098.1 CDS CLH_0703 NC_010723.1 720480 721781 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 720480..721781 Clostridium botulinum E3 str. Alaska E43 6317275 YP_001920099.1 CDS hcp NC_010723.1 722208 723851 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 722208..723851 Clostridium botulinum E3 str. Alaska E43 6318054 YP_001920100.1 CDS CLH_0705 NC_010723.1 723992 724771 D identified by glimmer; putative; hypothetical protein 723992..724771 Clostridium botulinum E3 str. Alaska E43 6318123 YP_001920101.1 CDS CLH_0706 NC_010723.1 724975 725658 D identified by match to protein family HMM PF02588; hypothetical protein 724975..725658 Clostridium botulinum E3 str. Alaska E43 6317897 YP_001920102.1 CDS CLH_0707 NC_010723.1 725912 726472 D identified by match to protein family HMM PF04647; accessory gene regulator B superfamily 725912..726472 Clostridium botulinum E3 str. Alaska E43 6319055 YP_001920103.1 CDS CLH_0708 NC_010723.1 726518 726646 D identified by glimmer; putative; hypothetical protein 726518..726646 Clostridium botulinum E3 str. Alaska E43 6320042 YP_001920104.1 CDS CLH_0709 NC_010723.1 726674 727930 D identified by match to protein family HMM PF02518; putative sensor histidine kinase 726674..727930 Clostridium botulinum E3 str. Alaska E43 6317711 YP_001920105.1 CDS CLH_0710 NC_010723.1 728034 729263 D two-component sensor histidine kinase 728034..729263 Clostridium botulinum E3 str. Alaska E43 6319767 YP_001920106.1 CDS CLH_0711 NC_010723.1 729307 729423 R identified by glimmer; putative; hypothetical protein complement(729307..729423) Clostridium botulinum E3 str. Alaska E43 6320537 YP_001920107.1 CDS CLH_0712 NC_010723.1 729458 730420 D identified by match to protein family HMM PF06803; hypothetical protein 729458..730420 Clostridium botulinum E3 str. Alaska E43 6318179 YP_001920108.1 CDS CLH_0713 NC_010723.1 730456 731409 D ribonuclease HI 730456..731409 Clostridium botulinum E3 str. Alaska E43 6318890 YP_001920109.1 CDS CLH_0714 NC_010723.1 731503 731679 D hypothetical protein 731503..731679 Clostridium botulinum E3 str. Alaska E43 6320064 YP_001920110.1 CDS CLH_0715 NC_010723.1 731958 733256 D identified by match to protein family HMM PF00515; match to protein family HMM PF01381; helix-turn-helix domain-containing protein 731958..733256 Clostridium botulinum E3 str. Alaska E43 6320593 YP_001920111.1 CDS CLH_0716 NC_010723.1 733306 734571 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; tetratricopeptide repeat protein 733306..734571 Clostridium botulinum E3 str. Alaska E43 6318931 YP_001920112.1 CDS CLH_0717 NC_010723.1 734784 735317 D identified by glimmer; putative; hypothetical protein 734784..735317 Clostridium botulinum E3 str. Alaska E43 6319555 YP_001920113.1 CDS clpB NC_010723.1 735468 738071 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; ATP-dependent chaperone ClpB 735468..738071 Clostridium botulinum E3 str. Alaska E43 6319521 YP_001920114.1 CDS CLH_0719 NC_010723.1 738456 738638 R identified by match to protein family HMM PF00269; hypothetical protein complement(738456..738638) Clostridium botulinum E3 str. Alaska E43 6318209 YP_001920115.1 CDS CLH_0720 NC_010723.1 738822 739790 R identified by match to protein family HMM PF03576; peptidase, T4 family complement(738822..739790) Clostridium botulinum E3 str. Alaska E43 6318349 YP_001920116.1 CDS CLH_0721 NC_010723.1 739969 740565 R membrane protein complement(739969..740565) Clostridium botulinum E3 str. Alaska E43 6317359 YP_001920117.1 CDS CLH_0722 NC_010723.1 740971 741837 D identified by match to protein family HMM PF01171; PP-loop family protein 740971..741837 Clostridium botulinum E3 str. Alaska E43 6318965 YP_001920118.1 CDS CLH_0723 NC_010723.1 741971 742168 D hypothetical protein 741971..742168 Clostridium botulinum E3 str. Alaska E43 6318036 YP_001920119.1 CDS CLH_0724 NC_010723.1 742358 744112 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase domain-containing protein 742358..744112 Clostridium botulinum E3 str. Alaska E43 6319764 YP_001920120.1 CDS CLH_0725 NC_010723.1 744566 745084 D putative tryptophan transport protein 744566..745084 Clostridium botulinum E3 str. Alaska E43 6317615 YP_001920121.1 CDS CLH_0726 NC_010723.1 745172 745888 R identified by match to protein family HMM PF01522; polysaccharide deacetylase domain-containing protein complement(745172..745888) Clostridium botulinum E3 str. Alaska E43 6319003 YP_001920122.1 CDS CLH_0727 NC_010723.1 746305 751491 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain protein 746305..751491 Clostridium botulinum E3 str. Alaska E43 6318893 YP_001920123.1 CDS CLH_0728 NC_010723.1 751618 752268 D identified by glimmer; putative; hypothetical protein 751618..752268 Clostridium botulinum E3 str. Alaska E43 6319343 YP_001920124.1 CDS dut NC_010723.1 752409 752849 D identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'-triphosphate nucleotidohydrolase 752409..752849 Clostridium botulinum E3 str. Alaska E43 6319836 YP_001920125.1 CDS CLH_0730 NC_010723.1 753132 755057 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(753132..755057) Clostridium botulinum E3 str. Alaska E43 6317997 YP_001920126.1 CDS CLH_0731 NC_010723.1 755165 755779 D identified by match to protein family HMM PF00440; transcriptional regulator, TetR family 755165..755779 Clostridium botulinum E3 str. Alaska E43 6318578 YP_001920127.1 CDS CLH_0732 NC_010723.1 755914 756534 R hypothetical protein complement(755914..756534) Clostridium botulinum E3 str. Alaska E43 6317567 YP_001920128.1 CDS CLH_0733 NC_010723.1 756545 757081 R hypothetical protein complement(756545..757081) Clostridium botulinum E3 str. Alaska E43 6317246 YP_001920129.1 CDS CLH_0734 NC_010723.1 757250 758557 D identified by match to protein family HMM PF00266; cysteine desulfurase 757250..758557 Clostridium botulinum E3 str. Alaska E43 6320438 YP_001920130.1 CDS CLH_0735 NC_010723.1 758686 759903 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(758686..759903) Clostridium botulinum E3 str. Alaska E43 6318642 YP_001920131.1 CDS CLH_0736 NC_010723.1 760121 760672 D identified by match to protein family HMM PF02659; integral membrane protein 760121..760672 Clostridium botulinum E3 str. Alaska E43 6320027 YP_001920132.1 CDS CLH_0737 NC_010723.1 760735 761148 D identified by match to protein family HMM PF01475; Fur family transcriptional regulator 760735..761148 Clostridium botulinum E3 str. Alaska E43 6320463 YP_001920133.1 CDS CLH_0738 NC_010723.1 761462 762256 R identified by match to protein family HMM PF00950; hydrophobic membrane protein ZurM complement(761462..762256) Clostridium botulinum E3 str. Alaska E43 6318953 YP_001920134.1 CDS CLH_0739 NC_010723.1 762289 762963 R identified by match to protein family HMM PF00005; zinc import ATP-binding protein ZnuC complement(762289..762963) Clostridium botulinum E3 str. Alaska E43 6318907 YP_001920135.1 CDS CLH_0740 NC_010723.1 763061 763483 R hypothetical protein complement(763061..763483) Clostridium botulinum E3 str. Alaska E43 6318909 YP_001920136.1 CDS CLH_0741 NC_010723.1 763892 764290 D hypothetical protein 763892..764290 Clostridium botulinum E3 str. Alaska E43 6318606 YP_001920137.1 CDS pepF NC_010723.1 764336 766120 D identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F 764336..766120 Clostridium botulinum E3 str. Alaska E43 6320605 YP_001920138.1 CDS CLH_0743 NC_010723.1 766483 767448 D identified by match to protein family HMM PF01694; rhomboid family protein 766483..767448 Clostridium botulinum E3 str. Alaska E43 6318849 YP_001920139.1 CDS CLH_0744 NC_010723.1 767484 768095 D hypothetical protein 767484..768095 Clostridium botulinum E3 str. Alaska E43 6318350 YP_001920140.1 CDS gluD NC_010723.1 768269 769621 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 768269..769621 Clostridium botulinum E3 str. Alaska E43 6319554 YP_001920141.1 CDS CLH_0746 NC_010723.1 770171 771601 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 770171..771601 Clostridium botulinum E3 str. Alaska E43 6317966 YP_001920142.1 CDS CLH_0747 NC_010723.1 772015 773964 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 772015..773964 Clostridium botulinum E3 str. Alaska E43 6318089 YP_001920143.1 CDS CLH_0748 NC_010723.1 773985 776894 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 773985..776894 Clostridium botulinum E3 str. Alaska E43 6317421 YP_001920144.1 CDS CLH_0749 NC_010723.1 776913 777449 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; protein ThiJ 776913..777449 Clostridium botulinum E3 str. Alaska E43 6317398 YP_001920145.1 CDS recJ NC_010723.1 777576 779342 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 777576..779342 Clostridium botulinum E3 str. Alaska E43 6317868 YP_001920146.1 CDS CLH_0751 NC_010723.1 779686 779874 R identified by glimmer; putative; hypothetical protein complement(779686..779874) Clostridium botulinum E3 str. Alaska E43 6319308 YP_001920147.1 CDS CLH_0752 NC_010723.1 779904 781199 R identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase complement(779904..781199) Clostridium botulinum E3 str. Alaska E43 6318437 YP_001920148.1 CDS CLH_0753 NC_010723.1 781690 781887 R identified by match to protein family HMM PF00269; hypothetical protein complement(781690..781887) Clostridium botulinum E3 str. Alaska E43 6318009 YP_001920149.1 CDS murG NC_010723.1 782486 783562 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 782486..783562 Clostridium botulinum E3 str. Alaska E43 6320498 YP_001920150.1 CDS CLH_0755 NC_010723.1 783749 784186 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 783749..784186 Clostridium botulinum E3 str. Alaska E43 6318306 YP_001920151.1 CDS nifJ NC_010723.1 784313 787813 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 784313..787813 Clostridium botulinum E3 str. Alaska E43 6319250 YP_001920152.1 CDS CLH_0757 NC_010723.1 788313 788672 D hypothetical protein 788313..788672 Clostridium botulinum E3 str. Alaska E43 6319161 YP_001920153.1 CDS CLH_0758 NC_010723.1 788976 790169 D identified by match to protein family HMM PF00155; aspartate aminotransferase 788976..790169 Clostridium botulinum E3 str. Alaska E43 6318649 YP_001920154.1 CDS CLH_0759 NC_010723.1 790396 791034 D identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD-superfamily hydrolase 790396..791034 Clostridium botulinum E3 str. Alaska E43 6319719 YP_001920155.1 CDS CLH_0760 NC_010723.1 791060 791863 D identified by match to protein family HMM PF01063; hypothetical protein 791060..791863 Clostridium botulinum E3 str. Alaska E43 6319406 YP_001920156.1 CDS CLH_0761 NC_010723.1 791944 793890 D identified by match to protein family HMM PF03961; hypothetical protein 791944..793890 Clostridium botulinum E3 str. Alaska E43 6320377 YP_001920157.1 CDS CLH_0762 NC_010723.1 793905 794354 D identified by match to protein family HMM PF01584; chemotaxis protein CheW 793905..794354 Clostridium botulinum E3 str. Alaska E43 6318372 YP_001920158.1 CDS CLH_0763 NC_010723.1 794363 794851 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 794363..794851 Clostridium botulinum E3 str. Alaska E43 6319177 YP_001920159.1 CDS CLH_0764 NC_010723.1 794865 795971 D identified by match to protein family HMM PF00072; match to protein family HMM PF01339; chemotaxis response regulator protein-glutamate methylesterase 794865..795971 Clostridium botulinum E3 str. Alaska E43 6319656 YP_001920160.1 CDS cheR NC_010723.1 795981 796748 D identified by match to protein family HMM PF01739; match to protein family HMM PF03705; CheR methyltransferase, SAM binding domain 795981..796748 Clostridium botulinum E3 str. Alaska E43 6317640 YP_001920161.1 CDS CLH_0766 NC_010723.1 796760 798784 D identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA 796760..798784 Clostridium botulinum E3 str. Alaska E43 6319030 YP_001920162.1 CDS CLH_0767 NC_010723.1 798808 799407 D identified by match to protein family HMM PF04509; CheY-P phosphatase CheC 798808..799407 Clostridium botulinum E3 str. Alaska E43 6318250 YP_001920163.1 CDS CLH_0768 NC_010723.1 799426 799785 D identified by match to protein family HMM PF00072; chemotaxis protein CheY 799426..799785 Clostridium botulinum E3 str. Alaska E43 6320274 YP_001920164.1 CDS CLH_0769 NC_010723.1 799810 800205 D identified by match to protein family HMM PF01584; chemotaxis signal transduction protein CheW 799810..800205 Clostridium botulinum E3 str. Alaska E43 6319913 YP_001920165.1 CDS fliM NC_010723.1 800227 801222 D identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 800227..801222 Clostridium botulinum E3 str. Alaska E43 6320101 YP_001920166.1 CDS fliN NC_010723.1 801215 802366 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 801215..802366 Clostridium botulinum E3 str. Alaska E43 6319922 YP_001920167.1 CDS CLH_0772 NC_010723.1 802725 803003 D identified by match to protein family HMM PF04316; negative regulator of flagellin synthesis 802725..803003 Clostridium botulinum E3 str. Alaska E43 6319027 YP_001920168.1 CDS CLH_0773 NC_010723.1 803007 803417 D hypothetical protein 803007..803417 Clostridium botulinum E3 str. Alaska E43 6318465 YP_001920169.1 CDS flgK NC_010723.1 803509 805323 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK 803509..805323 Clostridium botulinum E3 str. Alaska E43 6318783 YP_001920170.1 CDS flgL NC_010723.1 805369 806577 D identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550; flagellar hook-associated protein 3 805369..806577 Clostridium botulinum E3 str. Alaska E43 6319765 YP_001920171.1 CDS CLH_0776 NC_010723.1 806595 807020 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 806595..807020 Clostridium botulinum E3 str. Alaska E43 6317755 YP_001920172.1 CDS csrA NC_010723.1 807025 807240 D identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 807025..807240 Clostridium botulinum E3 str. Alaska E43 6320283 YP_001920173.1 CDS CLH_0778 NC_010723.1 807427 807783 D identified by match to protein family HMM PF03646; flaG family protein 807427..807783 Clostridium botulinum E3 str. Alaska E43 6319636 YP_001920174.1 CDS CLH_0779 NC_010723.1 807804 808100 D hypothetical protein 807804..808100 Clostridium botulinum E3 str. Alaska E43 6318775 YP_001920175.1 CDS fliS NC_010723.1 808112 808489 D identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 808112..808489 Clostridium botulinum E3 str. Alaska E43 6319223 YP_001920176.1 CDS CLH_0781 NC_010723.1 808509 810596 D identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar cap protein FliD 808509..810596 Clostridium botulinum E3 str. Alaska E43 6318913 YP_001920177.1 CDS CLH_0782 NC_010723.1 810601 810927 D hypothetical protein 810601..810927 Clostridium botulinum E3 str. Alaska E43 6320352 YP_001920178.1 CDS CLH_0783 NC_010723.1 811036 811215 D hypothetical protein 811036..811215 Clostridium botulinum E3 str. Alaska E43 6317912 YP_001920179.1 CDS CLH_0784 NC_010723.1 811632 812444 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 811632..812444 Clostridium botulinum E3 str. Alaska E43 6318253 YP_001920180.1 CDS CLH_0785 NC_010723.1 812589 814493 D identified by match to protein family HMM PF00535; family 2 glycosyl transferase 812589..814493 Clostridium botulinum E3 str. Alaska E43 6319110 YP_001920181.1 CDS CLH_0786 NC_010723.1 814704 815516 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 814704..815516 Clostridium botulinum E3 str. Alaska E43 6319311 YP_001920182.1 CDS CLH_0787 NC_010723.1 815680 817479 D identified by match to protein family HMM PF01973; hypothetical protein 815680..817479 Clostridium botulinum E3 str. Alaska E43 6319300 YP_001920183.1 CDS CLH_0788 NC_010723.1 817508 817855 D hypothetical protein 817508..817855 Clostridium botulinum E3 str. Alaska E43 6320517 YP_001920184.1 CDS CLH_0789 NC_010723.1 817926 819137 D identified by match to protein family HMM PF01973; hypothetical protein 817926..819137 Clostridium botulinum E3 str. Alaska E43 6319872 YP_001920185.1 CDS CLH_0790 NC_010723.1 819262 820209 D undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein 819262..820209 Clostridium botulinum E3 str. Alaska E43 6319134 YP_001920186.1 CDS CLH_0791 NC_010723.1 820206 820889 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; putative hydrolase 820206..820889 Clostridium botulinum E3 str. Alaska E43 6317456 YP_001920187.1 CDS CLH_0792 NC_010723.1 820946 821728 D identified by match to protein family HMM PF02348; spore coat polysaccharide biosynthesis protein SpsF 820946..821728 Clostridium botulinum E3 str. Alaska E43 6320160 YP_001920188.1 CDS CLH_0793 NC_010723.1 821764 822513 D CalS11 821764..822513 Clostridium botulinum E3 str. Alaska E43 6318304 YP_001920189.1 CDS CLH_0794 NC_010723.1 822586 823464 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase type 12 822586..823464 Clostridium botulinum E3 str. Alaska E43 6320590 YP_001920190.1 CDS CLH_0795 NC_010723.1 823534 825129 D hypothetical protein 823534..825129 Clostridium botulinum E3 str. Alaska E43 6318235 YP_001920191.1 CDS CLH_0796 NC_010723.1 825444 825557 D identified by glimmer; putative; hypothetical protein 825444..825557 Clostridium botulinum E3 str. Alaska E43 6318609 YP_001920192.1 CDS CLH_0797 NC_010723.1 825700 826674 D glycosyltransferase 825700..826674 Clostridium botulinum E3 str. Alaska E43 6319089 YP_001920193.1 CDS CLH_0798 NC_010723.1 826700 827755 D identified by match to protein family HMM PF03102; match to protein family HMM PF08666; sialic acid synthase 826700..827755 Clostridium botulinum E3 str. Alaska E43 6318427 YP_001920194.1 CDS CLH_0799 NC_010723.1 827789 828805 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; FlmA protein 827789..828805 Clostridium botulinum E3 str. Alaska E43 6319265 YP_001920195.1 CDS CLH_0800 NC_010723.1 829113 830330 D hypothetical protein 829113..830330 Clostridium botulinum E3 str. Alaska E43 6320055 YP_001920196.1 CDS CLH_0801 NC_010723.1 830366 831370 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; putative UDP-glucose 4-epimerase 830366..831370 Clostridium botulinum E3 str. Alaska E43 6319595 YP_001920197.1 CDS CLH_0802 NC_010723.1 831395 833404 D identified by match to protein family HMM PF00515; match to protein family HMM PF00884; match to protein family HMM PF07719; sulfatase-domain-containing protein 831395..833404 Clostridium botulinum E3 str. Alaska E43 6320269 YP_001920198.1 CDS CLH_0803 NC_010723.1 833870 834712 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 833870..834712 Clostridium botulinum E3 str. Alaska E43 6318997 YP_001920199.1 CDS flgB NC_010723.1 835500 835901 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 835500..835901 Clostridium botulinum E3 str. Alaska E43 6318478 YP_001920200.1 CDS flgC NC_010723.1 835916 836323 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 835916..836323 Clostridium botulinum E3 str. Alaska E43 6319668 YP_001920201.1 CDS fliE NC_010723.1 836337 836663 D identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein 836337..836663 Clostridium botulinum E3 str. Alaska E43 6320617 YP_001920202.1 CDS fliF NC_010723.1 836688 838250 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 836688..838250 Clostridium botulinum E3 str. Alaska E43 6318934 YP_001920203.1 CDS fliG NC_010723.1 838257 839273 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 838257..839273 Clostridium botulinum E3 str. Alaska E43 6318780 YP_001920204.1 CDS CLH_0809 NC_010723.1 839257 840042 D flagellar assembly protein 839257..840042 Clostridium botulinum E3 str. Alaska E43 6318481 YP_001920205.1 CDS fliI NC_010723.1 840054 841361 D identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497; flagellar protein export ATPase FliI 840054..841361 Clostridium botulinum E3 str. Alaska E43 6317592 YP_001920206.1 CDS fliJ NC_010723.1 841396 841839 D identified by match to protein family HMM TIGR02473; flagellar export protein FliJ 841396..841839 Clostridium botulinum E3 str. Alaska E43 6319984 YP_001920207.1 CDS CLH_0812 NC_010723.1 841846 843150 D identified by match to protein family HMM PF02120; putative flagellar hook-length control protein FliK 841846..843150 Clostridium botulinum E3 str. Alaska E43 6319246 YP_001920208.1 CDS CLH_0813 NC_010723.1 843162 844127 D identified by match to protein family HMM PF03963; flagellar hook assembly protein FlgD 843162..844127 Clostridium botulinum E3 str. Alaska E43 6318636 YP_001920209.1 CDS CLH_0814 NC_010723.1 844131 844520 D identified by match to protein family HMM TIGR02530; flagellar operon protein 844131..844520 Clostridium botulinum E3 str. Alaska E43 6318744 YP_001920210.1 CDS CLH_0815 NC_010723.1 844663 845763 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506; flagellar hook protein FlgE 844663..845763 Clostridium botulinum E3 str. Alaska E43 6318387 YP_001920211.1 CDS CLH_0816 NC_010723.1 845960 847054 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506; flagellar hook protein FlgE 845960..847054 Clostridium botulinum E3 str. Alaska E43 6319776 YP_001920212.1 CDS CLH_0817 NC_010723.1 847150 847341 D identified by match to protein family HMM PF06289; hypothetical protein 847150..847341 Clostridium botulinum E3 str. Alaska E43 6318753 YP_001920213.1 CDS CLH_0818 NC_010723.1 847357 848160 D identified by match to protein family HMM PF01618; chemotaxis protein MotA 847357..848160 Clostridium botulinum E3 str. Alaska E43 6320100 YP_001920214.1 CDS CLH_0819 NC_010723.1 848163 848906 D identified by match to protein family HMM PF00691; chemotaxis protein MotB 848163..848906 Clostridium botulinum E3 str. Alaska E43 6318181 YP_001920215.1 CDS fliL NC_010723.1 848912 849391 D identified by match to protein family HMM PF03748; flagellar basal body-associated protein FliL 848912..849391 Clostridium botulinum E3 str. Alaska E43 6320320 YP_001920216.1 CDS CLH_0821 NC_010723.1 849405 849791 D putative flagellar biosynthesis protein 849405..849791 Clostridium botulinum E3 str. Alaska E43 6319009 YP_001920217.1 CDS fliP NC_010723.1 849794 850573 D identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103; flagellar biosynthetic protein FliP 849794..850573 Clostridium botulinum E3 str. Alaska E43 6318485 YP_001920218.1 CDS fliQ NC_010723.1 850585 850854 D identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 850585..850854 Clostridium botulinum E3 str. Alaska E43 6318950 YP_001920219.1 CDS CLH_0824 NC_010723.1 850872 852704 D FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB 850872..852704 Clostridium botulinum E3 str. Alaska E43 6319662 YP_001920220.1 CDS flhA NC_010723.1 852734 854800 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 852734..854800 Clostridium botulinum E3 str. Alaska E43 6319998 YP_001920221.1 CDS flhF NC_010723.1 854800 856011 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 854800..856011 Clostridium botulinum E3 str. Alaska E43 6319843 YP_001920222.1 CDS CLH_0827 NC_010723.1 856005 856865 D identified by match to protein family HMM PF01656; chromosome partitioning ATPase protein, MinD family 856005..856865 Clostridium botulinum E3 str. Alaska E43 6317413 YP_001920223.1 CDS CLH_0828 NC_010723.1 856876 857511 D identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 856876..857511 Clostridium botulinum E3 str. Alaska E43 6318695 YP_001920224.1 CDS CLH_0829 NC_010723.1 857619 858347 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; RNA polymerase sigma-D factor 857619..858347 Clostridium botulinum E3 str. Alaska E43 6317727 YP_001920225.1 CDS CLH_0830 NC_010723.1 858360 858998 D hypothetical protein 858360..858998 Clostridium botulinum E3 str. Alaska E43 6317473 YP_001920226.1 CDS CLH_0831 NC_010723.1 859076 859198 D hypothetical protein 859076..859198 Clostridium botulinum E3 str. Alaska E43 6319981 YP_001920227.1 CDS flgG NC_010723.1 859199 859972 D makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 859199..859972 Clostridium botulinum E3 str. Alaska E43 6317779 YP_001920228.1 CDS flgG NC_010723.1 859986 860756 D makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 859986..860756 Clostridium botulinum E3 str. Alaska E43 6320476 YP_001920229.1 CDS CLH_0834 NC_010723.1 861006 862646 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(861006..862646) Clostridium botulinum E3 str. Alaska E43 6317276 YP_001920230.1 CDS CLH_0835 NC_010723.1 862792 865338 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; putative calcium-translocating P-type ATPase, PMCA-type 862792..865338 Clostridium botulinum E3 str. Alaska E43 6319671 YP_001920231.1 CDS CLH_0836 NC_010723.1 865596 866027 R hypothetical protein complement(865596..866027) Clostridium botulinum E3 str. Alaska E43 6320444 YP_001920232.1 CDS botR NC_010723.1 866476 867021 D identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; transcriptional regulator BotR, P-21 866476..867021 Clostridium botulinum E3 str. Alaska E43 6319860 YP_001920233.1 CDS CLH_0838 NC_010723.1 867014 867235 D UviB-like protein 867014..867235 Clostridium botulinum E3 str. Alaska E43 6319839 YP_001920234.1 CDS CLH_0839 NC_010723.1 867456 868379 D identified by glimmer; putative; hypothetical protein 867456..868379 Clostridium botulinum E3 str. Alaska E43 6319599 YP_001920235.1 CDS CLH_0840 NC_010723.1 868558 870867 D identified by match to protein family HMM PF05362; ATP-dependent protease 868558..870867 Clostridium botulinum E3 str. Alaska E43 6320603 YP_001920236.1 CDS spoIIAA NC_010723.1 871220 871555 D identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886; anti-sigma F factor antagonist 871220..871555 Clostridium botulinum E3 str. Alaska E43 6318327 YP_001920237.1 CDS spoIIAB NC_010723.1 871572 872003 D binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 871572..872003 Clostridium botulinum E3 str. Alaska E43 6319877 YP_001920238.1 CDS sigF NC_010723.1 872013 872768 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 872013..872768 Clostridium botulinum E3 str. Alaska E43 6319218 YP_001920239.1 CDS spoVAC NC_010723.1 873360 873818 D identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838; stage V sporulation protein AC 873360..873818 Clostridium botulinum E3 str. Alaska E43 6318581 YP_001920240.1 CDS spoVAD NC_010723.1 873974 874993 D identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845; stage V sporulation protein AD 873974..874993 Clostridium botulinum E3 str. Alaska E43 6317962 YP_001920241.1 CDS spoVAE NC_010723.1 875017 875373 D identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839; stage V sporulation protein AE 875017..875373 Clostridium botulinum E3 str. Alaska E43 6318858 YP_001920242.1 CDS CLH_0847 NC_010723.1 875487 878003 D identified by match to protein family HMM PF00122; putative calcium-transporting ATPase 875487..878003 Clostridium botulinum E3 str. Alaska E43 6320496 YP_001920243.1 CDS CLH_0848 NC_010723.1 878009 879703 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; putative competence protein 878009..879703 Clostridium botulinum E3 str. Alaska E43 6319204 YP_001920244.1 CDS holA NC_010723.1 879733 880767 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 879733..880767 Clostridium botulinum E3 str. Alaska E43 6319956 YP_001920245.1 CDS rpsT NC_010723.1 880809 881072 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(880809..881072) Clostridium botulinum E3 str. Alaska E43 6319934 YP_001920246.1 CDS gpr NC_010723.1 881390 882361 D Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 881390..882361 Clostridium botulinum E3 str. Alaska E43 6317493 YP_001920247.1 CDS CLH_0852 NC_010723.1 882776 883843 D identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867; stage II sporulation protein P 882776..883843 Clostridium botulinum E3 str. Alaska E43 6320339 YP_001920248.1 CDS CLH_0853 NC_010723.1 883968 884348 D identified by glimmer; putative; hypothetical protein 883968..884348 Clostridium botulinum E3 str. Alaska E43 6319602 YP_001920249.1 CDS lepA NC_010723.1 884492 886294 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 884492..886294 Clostridium botulinum E3 str. Alaska E43 6319456 YP_001920250.1 CDS CLH_0855 NC_010723.1 886405 887544 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 886405..887544 Clostridium botulinum E3 str. Alaska E43 6318460 YP_001920251.1 CDS hrcA NC_010723.1 887729 888760 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 887729..888760 Clostridium botulinum E3 str. Alaska E43 6318925 YP_001920252.1 CDS grpE NC_010723.1 888799 889422 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 888799..889422 Clostridium botulinum E3 str. Alaska E43 6318835 YP_001920253.1 CDS dnaK NC_010723.1 889502 891352 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 889502..891352 Clostridium botulinum E3 str. Alaska E43 6317244 YP_001920254.1 CDS dnaJ NC_010723.1 891456 892577 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 891456..892577 Clostridium botulinum E3 str. Alaska E43 6319916 YP_001920255.1 CDS CLH_0860 NC_010723.1 892868 894418 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; ferredoxin-nitrite reductase 892868..894418 Clostridium botulinum E3 str. Alaska E43 6319785 YP_001920256.1 CDS trmB NC_010723.1 894678 895337 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 894678..895337 Clostridium botulinum E3 str. Alaska E43 6318567 YP_001920257.1 CDS prmA NC_010723.1 895505 896446 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 895505..896446 Clostridium botulinum E3 str. Alaska E43 6318080 YP_001920258.1 CDS CLH_0863 NC_010723.1 896539 897303 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 896539..897303 Clostridium botulinum E3 str. Alaska E43 6319422 YP_001920259.1 CDS CLH_0864 NC_010723.1 897303 898607 D identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 897303..898607 Clostridium botulinum E3 str. Alaska E43 6317731 YP_001920260.1 CDS CLH_0865 NC_010723.1 898810 899154 D identified by match to protein family HMM PF01230; HIT family protein 898810..899154 Clostridium botulinum E3 str. Alaska E43 6317320 YP_001920261.1 CDS rpsU NC_010723.1 899291 899467 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 899291..899467 Clostridium botulinum E3 str. Alaska E43 6318733 YP_001920262.1 CDS CLH_0867 NC_010723.1 899497 899946 D identified by match to protein family HMM PF09424; GatB/Yqey domain protein 899497..899946 Clostridium botulinum E3 str. Alaska E43 6320452 YP_001920263.1 CDS yqfC NC_010723.1 900199 900477 D identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856; sporulation protein YqfC 900199..900477 Clostridium botulinum E3 str. Alaska E43 6318693 YP_001920264.1 CDS yqfD NC_010723.1 900480 901610 D identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876; sporulation protein YqfD 900480..901610 Clostridium botulinum E3 str. Alaska E43 6318388 YP_001920265.1 CDS CLH_0870 NC_010723.1 901645 903705 D identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; membrane protein containing HD superfamily hydrolase domain 901645..903705 Clostridium botulinum E3 str. Alaska E43 6318897 YP_001920266.1 CDS CLH_0871 NC_010723.1 903718 904218 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 903718..904218 Clostridium botulinum E3 str. Alaska E43 6318118 YP_001920267.1 CDS CLH_0872 NC_010723.1 904243 904944 D identified by match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase/PAP2 family protein 904243..904944 Clostridium botulinum E3 str. Alaska E43 6320015 YP_001920268.1 CDS era NC_010723.1 905417 906304 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 905417..906304 Clostridium botulinum E3 str. Alaska E43 6318490 YP_001920269.1 CDS recO NC_010723.1 906329 907078 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 906329..907078 Clostridium botulinum E3 str. Alaska E43 6320343 YP_001920270.1 CDS CLH_0875 NC_010723.1 907085 907702 D identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 907085..907702 Clostridium botulinum E3 str. Alaska E43 6318222 YP_001920271.1 CDS CLH_0876 NC_010723.1 907745 908374 D identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 907745..908374 Clostridium botulinum E3 str. Alaska E43 6318957 YP_001920272.1 CDS ppdK NC_010723.1 908464 911091 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 908464..911091 Clostridium botulinum E3 str. Alaska E43 6317631 YP_001920273.1 CDS CLH_0878 NC_010723.1 911382 912449 R identified by match to protein family HMM TIGR02906; spore coat protein complement(911382..912449) Clostridium botulinum E3 str. Alaska E43 6318680 YP_001920274.1 CDS CLH_0879 NC_010723.1 912636 913664 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 912636..913664 Clostridium botulinum E3 str. Alaska E43 6317666 YP_001920275.1 CDS dnaG NC_010723.1 913913 915691 D synthesizes RNA primers at the replication forks; DNA primase 913913..915691 Clostridium botulinum E3 str. Alaska E43 6320214 YP_001920276.1 CDS rpoD NC_010723.1 915697 916821 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 915697..916821 Clostridium botulinum E3 str. Alaska E43 6317440 YP_001920277.1 CDS CLH_0882 NC_010723.1 916914 917600 D identified by match to protein family HMM PF04816; Bcl-2 family protein 916914..917600 Clostridium botulinum E3 str. Alaska E43 6318661 YP_001920278.1 CDS CLH_0883 NC_010723.1 917718 918509 D identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 917718..918509 Clostridium botulinum E3 str. Alaska E43 6318598 YP_001920279.1 CDS CLH_0884 NC_010723.1 918566 918802 D identified by glimmer; putative; hypothetical protein 918566..918802 Clostridium botulinum E3 str. Alaska E43 6317412 YP_001920280.1 CDS CLH_0885 NC_010723.1 919288 919749 R identified by match to protein family HMM PF06114; phage protein complement(919288..919749) Clostridium botulinum E3 str. Alaska E43 6318552 YP_001920281.1 CDS CLH_0886 NC_010723.1 919767 920132 R identified by match to protein family HMM PF01381; transcriptional regulator complement(919767..920132) Clostridium botulinum E3 str. Alaska E43 6319681 YP_001920282.1 CDS CLH_0887 NC_010723.1 920387 920896 D hypothetical protein 920387..920896 Clostridium botulinum E3 str. Alaska E43 6319778 YP_001920283.1 CDS CLH_0888 NC_010723.1 921657 922073 D hypothetical protein 921657..922073 Clostridium botulinum E3 str. Alaska E43 6319348 YP_001920284.1 CDS CLH_0889 NC_010723.1 922063 922218 D hypothetical protein 922063..922218 Clostridium botulinum E3 str. Alaska E43 6319462 YP_001920285.1 CDS CLH_0890 NC_010723.1 922219 923529 D sheath tail protein 922219..923529 Clostridium botulinum E3 str. Alaska E43 6317337 YP_001920286.1 CDS CLH_0891 NC_010723.1 923548 924015 D identified by match to protein family HMM PF09393; hypothetical protein 923548..924015 Clostridium botulinum E3 str. Alaska E43 6319267 YP_001920287.1 CDS CLH_0892 NC_010723.1 924315 924728 D identified by match to protein family HMM PF08890; hypothetical protein 924315..924728 Clostridium botulinum E3 str. Alaska E43 6319847 YP_001920288.1 CDS CLH_0893 NC_010723.1 924924 926873 D hypothetical protein 924924..926873 Clostridium botulinum E3 str. Alaska E43 6318386 YP_001920289.1 CDS CLH_0894 NC_010723.1 926873 927535 D identified by match to protein family HMM PF01476; peptidoglycan-binding LysM 926873..927535 Clostridium botulinum E3 str. Alaska E43 6320273 YP_001920290.1 CDS CLH_0895 NC_010723.1 927547 928518 D hypothetical protein 927547..928518 Clostridium botulinum E3 str. Alaska E43 6318319 YP_001920291.1 CDS CLH_0896 NC_010723.1 928522 928851 D phage protein 928522..928851 Clostridium botulinum E3 str. Alaska E43 6319792 YP_001920292.1 CDS CLH_0897 NC_010723.1 928844 929251 D phage protein 928844..929251 Clostridium botulinum E3 str. Alaska E43 6318771 YP_001920293.1 CDS CLH_0898 NC_010723.1 929254 930312 D identified by match to protein family HMM PF04865; hypothetical protein 929254..930312 Clostridium botulinum E3 str. Alaska E43 6320558 YP_001920294.1 CDS CLH_0899 NC_010723.1 930313 932394 D hypothetical protein 930313..932394 Clostridium botulinum E3 str. Alaska E43 6317708 YP_001920295.1 CDS CLH_0900 NC_010723.1 932396 933010 D hypothetical protein 932396..933010 Clostridium botulinum E3 str. Alaska E43 6317628 YP_001920296.1 CDS CLH_0901 NC_010723.1 933025 933825 D identified by glimmer; putative; hypothetical protein 933025..933825 Clostridium botulinum E3 str. Alaska E43 6318613 YP_001920297.1 CDS CLH_0902 NC_010723.1 933842 934177 D identified by glimmer; putative; hypothetical protein 933842..934177 Clostridium botulinum E3 str. Alaska E43 6317692 YP_001920298.1 CDS CLH_0903 NC_010723.1 934170 934304 D identified by match to protein family HMM TIGR01669; phage protein, XkdX family 934170..934304 Clostridium botulinum E3 str. Alaska E43 6319095 YP_001920299.1 CDS CLH_0904 NC_010723.1 934418 934618 D UviB-like protein 934418..934618 Clostridium botulinum E3 str. Alaska E43 6319207 YP_001920300.1 CDS CLH_0905 NC_010723.1 934757 935551 D identified by match to protein family HMM PF01183; glycosyl hydrolase family protein 934757..935551 Clostridium botulinum E3 str. Alaska E43 6318666 YP_001920301.1 CDS CLH_0906 NC_010723.1 935699 935863 D surface lipoprotein-related protein 935699..935863 Clostridium botulinum E3 str. Alaska E43 6320035 YP_001920302.1 CDS CLH_0907 NC_010723.1 935886 936452 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(935886..936452) Clostridium botulinum E3 str. Alaska E43 6318860 YP_001920303.1 CDS CLH_0908 NC_010723.1 936819 937865 D hypothetical protein 936819..937865 Clostridium botulinum E3 str. Alaska E43 6319789 YP_001920304.1 CDS CLH_0909 NC_010723.1 937884 938921 D hypothetical protein 937884..938921 Clostridium botulinum E3 str. Alaska E43 6317722 YP_001920305.1 CDS CLH_0910 NC_010723.1 939071 940180 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; multiple sugar-binding transport ATP-binding protein MsmK 939071..940180 Clostridium botulinum E3 str. Alaska E43 6319726 YP_001920306.1 CDS CLH_0911 NC_010723.1 940202 941143 D hypothetical protein 940202..941143 Clostridium botulinum E3 str. Alaska E43 6320186 YP_001920307.1 CDS CLH_0912 NC_010723.1 941305 942321 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator MalR 941305..942321 Clostridium botulinum E3 str. Alaska E43 6318863 YP_001920308.1 CDS malQ NC_010723.1 942496 943983 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 942496..943983 Clostridium botulinum E3 str. Alaska E43 6318119 YP_001920309.1 CDS CLH_0914 NC_010723.1 943983 946343 D identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 943983..946343 Clostridium botulinum E3 str. Alaska E43 6319687 YP_001920310.1 CDS kdpA NC_010723.1 946860 948599 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 946860..948599 Clostridium botulinum E3 str. Alaska E43 6318362 YP_001920311.1 CDS kdpB NC_010723.1 948615 950681 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 948615..950681 Clostridium botulinum E3 str. Alaska E43 6320088 YP_001920312.1 CDS kdpC NC_010723.1 950699 951304 D one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 950699..951304 Clostridium botulinum E3 str. Alaska E43 6318290 YP_001920313.1 CDS CLH_0918 NC_010723.1 951467 954169 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor protein KdpD 951467..954169 Clostridium botulinum E3 str. Alaska E43 6318065 YP_001920314.1 CDS CLH_0919 NC_010723.1 954162 954869 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; KDP operon transcriptional regulatory protein KdpE 954162..954869 Clostridium botulinum E3 str. Alaska E43 6320334 YP_001920315.1 CDS prmA NC_010723.1 955088 955951 R identified by match to protein family HMM PF06325; 50S ribosomal protein L11 methyltransferase complement(955088..955951) Clostridium botulinum E3 str. Alaska E43 6317484 YP_001920316.1 CDS CLH_0921 NC_010723.1 956188 957147 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 956188..957147 Clostridium botulinum E3 str. Alaska E43 6319105 YP_001920317.1 CDS CLH_0922 NC_010723.1 957380 958168 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD hydrolase complement(957380..958168) Clostridium botulinum E3 str. Alaska E43 6317318 YP_001920318.1 CDS CLH_0923 NC_010723.1 958385 959122 D identified by match to protein family HMM PF02811; putative hydrolase 958385..959122 Clostridium botulinum E3 str. Alaska E43 6319691 YP_001920319.1 CDS CLH_0924 NC_010723.1 959192 959635 D identified by match to protein family HMM PF00583; spermine/spermidine acetyltransferase 959192..959635 Clostridium botulinum E3 str. Alaska E43 6320183 YP_001920320.1 CDS CLH_0925 NC_010723.1 960141 961568 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 960141..961568 Clostridium botulinum E3 str. Alaska E43 6318566 YP_001920321.1 CDS CLH_0926 NC_010723.1 961669 961941 R identified by match to protein family HMM PF00708; acylphosphatase complement(961669..961941) Clostridium botulinum E3 str. Alaska E43 6317463 YP_001920322.1 CDS CLH_0927 NC_010723.1 962072 962491 D identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 962072..962491 Clostridium botulinum E3 str. Alaska E43 6319758 YP_001920323.1 CDS CLH_0928 NC_010723.1 962586 963650 R identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein complement(962586..963650) Clostridium botulinum E3 str. Alaska E43 6319062 YP_001920324.1 CDS CLH_0929 NC_010723.1 963637 964437 R identified by match to protein family HMM PF00528; spermidine/putrescine transport system permease protein PotC complement(963637..964437) Clostridium botulinum E3 str. Alaska E43 6318047 YP_001920325.1 CDS CLH_0930 NC_010723.1 964431 965273 R identified by match to protein family HMM PF00528; putrescine transport system permease protein PotH complement(964431..965273) Clostridium botulinum E3 str. Alaska E43 6319284 YP_001920326.1 CDS CLH_0931 NC_010723.1 965266 966315 R identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187; spermidine/putrescine import ATP-binding protein PotA complement(965266..966315) Clostridium botulinum E3 str. Alaska E43 6318577 YP_001920327.1 CDS CLH_0932 NC_010723.1 966338 966877 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein complement(966338..966877) Clostridium botulinum E3 str. Alaska E43 6317728 YP_001920328.1 CDS CLH_0933 NC_010723.1 967244 968347 D GNAT family acetyltransferase 967244..968347 Clostridium botulinum E3 str. Alaska E43 6319444 YP_001920329.1 CDS CLH_0934 NC_010723.1 968420 969277 D identified by glimmer; putative; hypothetical protein 968420..969277 Clostridium botulinum E3 str. Alaska E43 6318236 YP_001920330.1 CDS CLH_0935 NC_010723.1 969434 970834 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein AlsT complement(969434..970834) Clostridium botulinum E3 str. Alaska E43 6320512 YP_001920331.1 CDS CLH_0936 NC_010723.1 971156 973681 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; membrane carboxypeptidase MrcB complement(971156..973681) Clostridium botulinum E3 str. Alaska E43 6319440 YP_001920332.1 CDS CLH_0937 NC_010723.1 973783 974430 D identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832; sporulation protein YunB 973783..974430 Clostridium botulinum E3 str. Alaska E43 6318870 YP_001920333.1 CDS hpt NC_010723.1 974529 975050 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(974529..975050) Clostridium botulinum E3 str. Alaska E43 6318214 YP_001920334.1 CDS CLH_0939 NC_010723.1 975607 977424 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156; GTP binding protein 975607..977424 Clostridium botulinum E3 str. Alaska E43 6318952 YP_001920335.1 CDS CLH_0940 NC_010723.1 977663 978571 D identified by match to protein family HMM PF01909; nucleotidyltransferase domain protein 977663..978571 Clostridium botulinum E3 str. Alaska E43 6318634 YP_001920336.1 CDS CLH_0941 NC_010723.1 978592 980019 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 978592..980019 Clostridium botulinum E3 str. Alaska E43 6318708 YP_001920337.1 CDS CLH_0942 NC_010723.1 980007 980654 D identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 980007..980654 Clostridium botulinum E3 str. Alaska E43 6319625 YP_001920338.1 CDS CLH_0943 NC_010723.1 980841 981581 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 980841..981581 Clostridium botulinum E3 str. Alaska E43 6318737 YP_001920339.1 CDS CLH_0944 NC_010723.1 981912 982247 R identified by glimmer; putative; hypothetical protein complement(981912..982247) Clostridium botulinum E3 str. Alaska E43 6317812 YP_001920340.1 CDS speD NC_010723.1 982648 983466 D S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 982648..983466 Clostridium botulinum E3 str. Alaska E43 6317392 YP_001920341.1 CDS CLH_0946 NC_010723.1 983482 984939 D identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; arginine decarboxylase 983482..984939 Clostridium botulinum E3 str. Alaska E43 6318790 YP_001920342.1 CDS speE NC_010723.1 984939 985793 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 984939..985793 Clostridium botulinum E3 str. Alaska E43 6319737 YP_001920343.1 CDS CLH_0948 NC_010723.1 985847 987046 D identified by match to protein family HMM PF03435; saccharopine dehydrogenase 985847..987046 Clostridium botulinum E3 str. Alaska E43 6320264 YP_001920344.1 CDS nspC NC_010723.1 987140 988282 D identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 987140..988282 Clostridium botulinum E3 str. Alaska E43 6317600 YP_001920345.1 CDS CLH_0950 NC_010723.1 988376 990535 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; two-component sensor kinase complement(988376..990535) Clostridium botulinum E3 str. Alaska E43 6317780 YP_001920346.1 CDS speB NC_010723.1 990817 991662 D identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 990817..991662 Clostridium botulinum E3 str. Alaska E43 6318043 YP_001920347.1 CDS CLH_0952 NC_010723.1 991777 992862 R identified by match to protein family HMM PF00465; match to protein family HMM PF01761; glycerol dehydrogenase complement(991777..992862) Clostridium botulinum E3 str. Alaska E43 6320474 YP_001920348.1 CDS CLH_0953 NC_010723.1 993183 995168 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative membrane-associated methyl-accepting chemotaxis protein fused to hamp domain 993183..995168 Clostridium botulinum E3 str. Alaska E43 6318877 YP_001920349.1 CDS CLH_0954 NC_010723.1 995378 996247 D identified by match to protein family HMM PF04055; radical SAM 995378..996247 Clostridium botulinum E3 str. Alaska E43 6318921 YP_001920350.1 CDS CLH_0955 NC_010723.1 996469 997050 D hypothetical protein 996469..997050 Clostridium botulinum E3 str. Alaska E43 6318983 YP_001920351.1 CDS ruvA NC_010723.1 997324 997920 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 997324..997920 Clostridium botulinum E3 str. Alaska E43 6319864 YP_001920352.1 CDS ruvB NC_010723.1 997956 998990 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 997956..998990 Clostridium botulinum E3 str. Alaska E43 6318838 YP_001920353.1 CDS queA NC_010723.1 999009 1000034 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 999009..1000034 Clostridium botulinum E3 str. Alaska E43 6318591 YP_001920354.1 CDS tgt NC_010723.1 1000178 1001317 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1000178..1001317 Clostridium botulinum E3 str. Alaska E43 6319011 YP_001920355.1 CDS yajC NC_010723.1 1001426 1001701 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1001426..1001701 Clostridium botulinum E3 str. Alaska E43 6319213 YP_001920356.1 CDS CLH_0961 NC_010723.1 1001763 1002137 D hypothetical protein 1001763..1002137 Clostridium botulinum E3 str. Alaska E43 6317847 YP_001920357.1 CDS CLH_0962 NC_010723.1 1002384 1004546 D identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; match to protein family HMM TIGR01129; protein export protein SecD 1002384..1004546 Clostridium botulinum E3 str. Alaska E43 6319619 YP_001920358.1 CDS CLH_0963 NC_010723.1 1004687 1005550 D identified by match to protein family HMM PF01368; DHH domain-containing protein 1004687..1005550 Clostridium botulinum E3 str. Alaska E43 6319418 YP_001920359.1 CDS apt NC_010723.1 1005591 1006109 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1005591..1006109 Clostridium botulinum E3 str. Alaska E43 6317753 YP_001920360.1 CDS relA NC_010723.1 1006216 1008402 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1006216..1008402 Clostridium botulinum E3 str. Alaska E43 6320034 YP_001920361.1 CDS dtd NC_010723.1 1008414 1008863 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1008414..1008863 Clostridium botulinum E3 str. Alaska E43 6318468 YP_001920362.1 CDS CLH_0967 NC_010723.1 1008894 1009496 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1008894..1009496 Clostridium botulinum E3 str. Alaska E43 6319574 YP_001920363.1 CDS CLH_0968 NC_010723.1 1009506 1010927 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1009506..1010927 Clostridium botulinum E3 str. Alaska E43 6320178 YP_001920364.1 CDS hisS NC_010723.1 1010993 1012246 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1010993..1012246 Clostridium botulinum E3 str. Alaska E43 6317844 YP_001920365.1 CDS aspS NC_010723.1 1012472 1014271 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1012472..1014271 Clostridium botulinum E3 str. Alaska E43 6318868 YP_001920366.1 CDS CLH_0971 NC_010723.1 1014334 1015260 R protein tyrosine phosphatase II superfamily protein complement(1014334..1015260) Clostridium botulinum E3 str. Alaska E43 6319183 YP_001920367.1 CDS CLH_0972 NC_010723.1 1015444 1016142 D identified by match to protein family HMM PF04474; hypothetical protein 1015444..1016142 Clostridium botulinum E3 str. Alaska E43 6319120 YP_001920368.1 CDS CLH_0973 NC_010723.1 1016286 1016606 D hypothetical protein 1016286..1016606 Clostridium botulinum E3 str. Alaska E43 6320010 YP_001920369.1 CDS CLH_0974 NC_010723.1 1016738 1017493 D identified by match to protein family HMM PF01022; match to protein family HMM PF02579; match to protein family HMM PF08279; ArsR family transcriptional regulator 1016738..1017493 Clostridium botulinum E3 str. Alaska E43 6319474 YP_001920370.1 CDS hom NC_010723.1 1017826 1019127 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1017826..1019127 Clostridium botulinum E3 str. Alaska E43 6318105 YP_001920371.1 CDS CLH_0976 NC_010723.1 1019494 1020054 D identified by match to protein family HMM PF04309; glycerol-3-phosphate responsive antiterminator 1019494..1020054 Clostridium botulinum E3 str. Alaska E43 6319230 YP_001920372.1 CDS glpK NC_010723.1 1020153 1021649 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1020153..1021649 Clostridium botulinum E3 str. Alaska E43 6317702 YP_001920373.1 CDS CLH_0978 NC_010723.1 1021805 1023235 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; glycerol-3-phosphate dehydrogenase, glpa 1021805..1023235 Clostridium botulinum E3 str. Alaska E43 6317646 YP_001920374.1 CDS CLH_0979 NC_010723.1 1023248 1024501 D identified by match to protein family HMM PF07992; NAD 1023248..1024501 Clostridium botulinum E3 str. Alaska E43 6317296 YP_001920375.1 CDS CLH_0980 NC_010723.1 1024503 1024856 D identified by match to protein family HMM PF07892; molybdopterin oxidoreductase, 4Fe-4S cluster-binding subunit 1024503..1024856 Clostridium botulinum E3 str. Alaska E43 6317768 YP_001920376.1 CDS CLH_0981 NC_010723.1 1025323 1026633 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(1025323..1026633) Clostridium botulinum E3 str. Alaska E43 6320332 YP_001920377.1 CDS glnA NC_010723.1 1027107 1028438 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1027107..1028438 Clostridium botulinum E3 str. Alaska E43 6318175 YP_001920378.1 CDS CLH_0983 NC_010723.1 1028461 1029024 D identified by match to protein family HMM PF03861; nitrogen regulator 1028461..1029024 Clostridium botulinum E3 str. Alaska E43 6320116 YP_001920379.1 CDS CLH_0984 NC_010723.1 1029153 1033724 D identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase [NADPH] large chain 1029153..1033724 Clostridium botulinum E3 str. Alaska E43 6320349 YP_001920380.1 CDS CLH_0985 NC_010723.1 1033736 1035208 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317; glutamate synthase [NADPH] small chain 1033736..1035208 Clostridium botulinum E3 str. Alaska E43 6320479 YP_001920381.1 CDS CLH_0986 NC_010723.1 1035434 1036861 D identified by match to protein family HMM PF00324; amino acid permease family protein 1035434..1036861 Clostridium botulinum E3 str. Alaska E43 6319840 YP_001920382.1 CDS CLH_0987 NC_010723.1 1036981 1037277 D hypothetical protein 1036981..1037277 Clostridium botulinum E3 str. Alaska E43 6317665 YP_001920383.1 CDS CLH_0988 NC_010723.1 1037640 1039265 D hypothetical protein 1037640..1039265 Clostridium botulinum E3 str. Alaska E43 6319573 YP_001920384.1 CDS CLH_0989 NC_010723.1 1039442 1039924 R identified by match to protein family HMM PF02559; CarD family transcriptional regulator complement(1039442..1039924) Clostridium botulinum E3 str. Alaska E43 6317832 YP_001920385.1 CDS CLH_0990 NC_010723.1 1040264 1041271 D hypothetical protein 1040264..1041271 Clostridium botulinum E3 str. Alaska E43 6318967 YP_001920386.1 CDS CLH_0991 NC_010723.1 1041410 1041949 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 1041410..1041949 Clostridium botulinum E3 str. Alaska E43 6320389 YP_001920387.1 CDS udk NC_010723.1 1042293 1042904 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1042293..1042904 Clostridium botulinum E3 str. Alaska E43 6318701 YP_001920388.1 CDS CLH_0993 NC_010723.1 1043095 1043703 R identified by similarity to GB:CAJ67405.1; hypothetical protein complement(1043095..1043703) Clostridium botulinum E3 str. Alaska E43 6317967 YP_001920389.1 CDS CLH_0994 NC_010723.1 1043952 1044407 D identified by glimmer; putative; hypothetical protein 1043952..1044407 Clostridium botulinum E3 str. Alaska E43 6319635 YP_001920390.1 CDS CLH_0995 NC_010723.1 1044578 1046179 R identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein complement(1044578..1046179) Clostridium botulinum E3 str. Alaska E43 6320591 YP_001920391.1 CDS rnz NC_010723.1 1046301 1047248 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1046301..1047248) Clostridium botulinum E3 str. Alaska E43 6320172 YP_001920392.1 CDS CLH_0997 NC_010723.1 1047401 1048057 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD hydrolase 1047401..1048057 Clostridium botulinum E3 str. Alaska E43 6319526 YP_001920393.1 CDS CLH_0998 NC_010723.1 1048221 1049369 D identified by match to protein family HMM PF01594; hypothetical protein 1048221..1049369 Clostridium botulinum E3 str. Alaska E43 6319173 YP_001920394.1 CDS CLH_0999 NC_010723.1 1049464 1049847 D identified by glimmer; putative; hypothetical protein 1049464..1049847 Clostridium botulinum E3 str. Alaska E43 6318565 YP_001920395.1 CDS CLH_1000 NC_010723.1 1049837 1050478 D putative normocyte binding protein 2a 1049837..1050478 Clostridium botulinum E3 str. Alaska E43 6320468 YP_001920396.1 CDS CLH_1001 NC_010723.1 1050478 1050774 D identified by glimmer; putative; hypothetical protein 1050478..1050774 Clostridium botulinum E3 str. Alaska E43 6319929 YP_001920397.1 CDS CLH_1002 NC_010723.1 1050795 1053263 D identified by glimmer; putative; hypothetical protein 1050795..1053263 Clostridium botulinum E3 str. Alaska E43 6317374 YP_001920398.1 CDS CLH_1003 NC_010723.1 1053321 1053530 D identified by glimmer; putative; hypothetical protein 1053321..1053530 Clostridium botulinum E3 str. Alaska E43 6320167 YP_001920399.1 CDS CLH_1004 NC_010723.1 1053878 1055938 D identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1053878..1055938 Clostridium botulinum E3 str. Alaska E43 6320584 YP_001920400.1 CDS CLH_1005 NC_010723.1 1056079 1056402 D identified by match to protein family HMM PF00085; thioredoxin family protein 1056079..1056402 Clostridium botulinum E3 str. Alaska E43 6320123 YP_001920401.1 CDS CLH_1006 NC_010723.1 1056673 1056981 D identified by glimmer; putative; hypothetical protein 1056673..1056981 Clostridium botulinum E3 str. Alaska E43 6318796 YP_001920402.1 CDS ilvA NC_010723.1 1057050 1058270 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(1057050..1058270) Clostridium botulinum E3 str. Alaska E43 6320169 YP_001920403.1 CDS CLH_1008 NC_010723.1 1058598 1059362 D identified by match to protein family HMM PF06738; membrane spanning protein 1058598..1059362 Clostridium botulinum E3 str. Alaska E43 6318740 YP_001920404.1 CDS CLH_1009 NC_010723.1 1059363 1059821 D membrane spanning protein 1059363..1059821 Clostridium botulinum E3 str. Alaska E43 6319339 YP_001920405.1 CDS CLH_1010 NC_010723.1 1060065 1060958 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux protein 1060065..1060958 Clostridium botulinum E3 str. Alaska E43 6317370 YP_001920406.1 CDS CLH_1011 NC_010723.1 1061239 1062231 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; putative K+-dependent Na+/Ca+ exchanger-like protein complement(1061239..1062231) Clostridium botulinum E3 str. Alaska E43 6318408 YP_001920407.1 CDS CLH_1012 NC_010723.1 1062660 1064216 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1062660..1064216 Clostridium botulinum E3 str. Alaska E43 6319772 YP_001920408.1 CDS brnQ NC_010723.1 1064592 1065884 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1064592..1065884 Clostridium botulinum E3 str. Alaska E43 6320567 YP_001920409.1 CDS CLH_1014 NC_010723.1 1066087 1066950 R identified by glimmer; putative; hypothetical protein complement(1066087..1066950) Clostridium botulinum E3 str. Alaska E43 6317557 YP_001920410.1 CDS CLH_1015 NC_010723.1 1067332 1067715 D identified by glimmer; putative; hypothetical protein 1067332..1067715 Clostridium botulinum E3 str. Alaska E43 6317417 YP_001920411.1 CDS CLH_1016 NC_010723.1 1067789 1067983 D hypothetical protein 1067789..1067983 Clostridium botulinum E3 str. Alaska E43 6320549 YP_001920412.1 CDS glyA NC_010723.1 1068942 1070177 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1068942..1070177 Clostridium botulinum E3 str. Alaska E43 6320608 YP_001920413.1 CDS CLH_1019 NC_010723.1 1070468 1071382 D Ser/Thr protein phosphatase family protein 1070468..1071382 Clostridium botulinum E3 str. Alaska E43 6318233 YP_001920414.1 CDS CLH_1020 NC_010723.1 1071430 1072365 D identified by match to protein family HMM PF01244; membrane dipeptidase 1071430..1072365 Clostridium botulinum E3 str. Alaska E43 6318243 YP_001920415.1 CDS fabG NC_010723.1 1072757 1073500 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1072757..1073500 Clostridium botulinum E3 str. Alaska E43 6317435 YP_001920416.1 CDS ilvE NC_010723.1 1073720 1074748 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1073720..1074748) Clostridium botulinum E3 str. Alaska E43 6318277 YP_001920417.1 CDS nadE NC_010723.1 1074901 1076799 R identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD(+) synthetase complement(1074901..1076799) Clostridium botulinum E3 str. Alaska E43 6318741 YP_001920418.1 CDS CLH_1024 NC_010723.1 1077100 1077543 D identified by match to protein family HMM PF01957; nodulation efficiency protein D 1077100..1077543 Clostridium botulinum E3 str. Alaska E43 6320374 YP_001920419.1 CDS CLH_1025 NC_010723.1 1077536 1078492 D identified by match to protein family HMM PF01145; spfh domain/band 7 family protein 1077536..1078492 Clostridium botulinum E3 str. Alaska E43 6319353 YP_001920420.1 CDS CLH_1026 NC_010723.1 1078918 1080228 D identified by match to protein family HMM PF00375; proton glutamate symport protein 1078918..1080228 Clostridium botulinum E3 str. Alaska E43 6318969 YP_001920421.1 CDS CLH_1027 NC_010723.1 1080509 1081030 D putative lipoprotein 1080509..1081030 Clostridium botulinum E3 str. Alaska E43 6317788 YP_001920422.1 CDS CLH_1028 NC_010723.1 1081337 1082725 R identified by match to protein family HMM PF01554; Na+ driven multidrug efflux pump complement(1081337..1082725) Clostridium botulinum E3 str. Alaska E43 6318523 YP_001920423.1 CDS CLH_1029 NC_010723.1 1082700 1082819 D identified by glimmer; putative; hypothetical protein 1082700..1082819 Clostridium botulinum E3 str. Alaska E43 6317710 YP_001920424.1 CDS CLH_1030 NC_010723.1 1082816 1083628 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1082816..1083628 Clostridium botulinum E3 str. Alaska E43 6318242 YP_001920425.1 CDS CLH_1031 NC_010723.1 1084054 1084860 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 1084054..1084860 Clostridium botulinum E3 str. Alaska E43 6320076 YP_001920426.1 CDS CLH_1032 NC_010723.1 1084876 1085517 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; L-cystine transport system permease protein TcyB 1084876..1085517 Clostridium botulinum E3 str. Alaska E43 6320086 YP_001920427.1 CDS CLH_1033 NC_010723.1 1085534 1086214 D identified by match to protein family HMM PF00005; ATP-binding protein 1085534..1086214 Clostridium botulinum E3 str. Alaska E43 6320288 YP_001920428.1 CDS CLH_1034 NC_010723.1 1086365 1086520 D hypothetical protein 1086365..1086520 Clostridium botulinum E3 str. Alaska E43 6318032 YP_001920429.1 CDS CLH_1035 NC_010723.1 1086625 1087881 D identified by match to protein family HMM PF00654; voltage gated chloride channel family 1086625..1087881 Clostridium botulinum E3 str. Alaska E43 6317820 YP_001920430.1 CDS CLH_1036 NC_010723.1 1087985 1088875 D identified by match to protein family HMM PF00248; oxidoreductase YdhF 1087985..1088875 Clostridium botulinum E3 str. Alaska E43 6319736 YP_001920431.1 CDS CLH_1037 NC_010723.1 1089135 1092881 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 1089135..1092881 Clostridium botulinum E3 str. Alaska E43 6319794 YP_001920432.1 CDS purE NC_010723.1 1093290 1093769 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1093290..1093769 Clostridium botulinum E3 str. Alaska E43 6318797 YP_001920433.1 CDS purC NC_010723.1 1093769 1094476 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1093769..1094476 Clostridium botulinum E3 str. Alaska E43 6319798 YP_001920434.1 CDS purF NC_010723.1 1094619 1096019 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1094619..1096019 Clostridium botulinum E3 str. Alaska E43 6320436 YP_001920435.1 CDS purM NC_010723.1 1096029 1097030 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1096029..1097030 Clostridium botulinum E3 str. Alaska E43 6318985 YP_001920436.1 CDS purN NC_010723.1 1097018 1097632 D identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 1097018..1097632 Clostridium botulinum E3 str. Alaska E43 6319098 YP_001920437.1 CDS purH NC_010723.1 1097782 1099287 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1097782..1099287 Clostridium botulinum E3 str. Alaska E43 6317830 YP_001920438.1 CDS purD NC_010723.1 1099539 1100789 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1099539..1100789 Clostridium botulinum E3 str. Alaska E43 6318572 YP_001920439.1 CDS CLH_1045 NC_010723.1 1100888 1101361 R hypothetical protein complement(1100888..1101361) Clostridium botulinum E3 str. Alaska E43 6318923 YP_001920440.1 CDS CLH_1046 NC_010723.1 1101601 1102041 R hypothetical protein complement(1101601..1102041) Clostridium botulinum E3 str. Alaska E43 6319596 YP_001920441.1 CDS CLH_1047 NC_010723.1 1102284 1102757 R hypothetical protein complement(1102284..1102757) Clostridium botulinum E3 str. Alaska E43 6317384 YP_001920442.1 CDS CLH_1048 NC_010723.1 1102910 1106302 D hypothetical protein 1102910..1106302 Clostridium botulinum E3 str. Alaska E43 6319392 YP_001920443.1 CDS CLH_1049 NC_010723.1 1106780 1107994 D identified by glimmer; putative; hypothetical protein 1106780..1107994 Clostridium botulinum E3 str. Alaska E43 6317654 YP_001920444.1 CDS CLH_1050 NC_010723.1 1107995 1109410 D identified by match to protein family HMM PF02629; CoA-binding protein 1107995..1109410 Clostridium botulinum E3 str. Alaska E43 6317826 YP_001920445.1 CDS CLH_1051 NC_010723.1 1109749 1110204 D identified by match to protein family HMM PF04397; LytR family transcriptional regulator 1109749..1110204 Clostridium botulinum E3 str. Alaska E43 6319710 YP_001920446.1 CDS CLH_1052 NC_010723.1 1110206 1110904 D hypothetical protein 1110206..1110904 Clostridium botulinum E3 str. Alaska E43 6318274 YP_001920447.1 CDS CLH_1053 NC_010723.1 1111037 1111879 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(1111037..1111879) Clostridium botulinum E3 str. Alaska E43 6318406 YP_001920448.1 CDS CLH_1054 NC_010723.1 1112015 1112593 D identified by match to protein family HMM PF00440; putative transcriptional regulator, AcrR family 1112015..1112593 Clostridium botulinum E3 str. Alaska E43 6319352 YP_001920449.1 CDS CLH_1055 NC_010723.1 1112695 1114584 R identified by match to protein family HMM PF02687; ABC transporter permease complement(1112695..1114584) Clostridium botulinum E3 str. Alaska E43 6318727 YP_001920450.1 CDS CLH_1056 NC_010723.1 1114586 1115335 R identified by match to protein family HMM PF00005; bacitracin export ATP-binding protein BceA complement(1114586..1115335) Clostridium botulinum E3 str. Alaska E43 6317299 YP_001920451.1 CDS CLH_1057 NC_010723.1 1115465 1117009 R ABC transporter permease complement(1115465..1117009) Clostridium botulinum E3 str. Alaska E43 6319620 YP_001920452.1 CDS CLH_1058 NC_010723.1 1116999 1117766 R identified by match to protein family HMM PF00005; bacitracin export ATP-binding protein BceA complement(1116999..1117766) Clostridium botulinum E3 str. Alaska E43 6317957 YP_001920453.1 CDS CLH_1059 NC_010723.1 1117776 1118807 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; two-component sensor kinase complement(1117776..1118807) Clostridium botulinum E3 str. Alaska E43 6318721 YP_001920454.1 CDS CLH_1060 NC_010723.1 1118804 1119472 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1118804..1119472) Clostridium botulinum E3 str. Alaska E43 6319128 YP_001920455.1 CDS CLH_1061 NC_010723.1 1119687 1120382 D putative F pilin acetylation protein 1119687..1120382 Clostridium botulinum E3 str. Alaska E43 6318594 YP_001920456.1 CDS CLH_1062 NC_010723.1 1120676 1121497 D hypothetical protein 1120676..1121497 Clostridium botulinum E3 str. Alaska E43 6317793 YP_001920457.1 CDS CLH_1063 NC_010723.1 1121702 1121854 D hypothetical protein 1121702..1121854 Clostridium botulinum E3 str. Alaska E43 6319078 YP_001920458.1 CDS CLH_1064 NC_010723.1 1122223 1122903 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 1122223..1122903 Clostridium botulinum E3 str. Alaska E43 6318086 YP_001920459.1 CDS CLH_1065 NC_010723.1 1123003 1124370 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 1123003..1124370 Clostridium botulinum E3 str. Alaska E43 6318383 YP_001920460.1 CDS CLH_1066 NC_010723.1 1124461 1125297 D hypothetical protein 1124461..1125297 Clostridium botulinum E3 str. Alaska E43 6317901 YP_001920461.1 CDS CLH_1067 NC_010723.1 1125329 1126378 D ABC transporter substrate-binding protein 1125329..1126378 Clostridium botulinum E3 str. Alaska E43 6318770 YP_001920462.1 CDS uhpT NC_010723.1 1126605 1128023 D cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 1126605..1128023 Clostridium botulinum E3 str. Alaska E43 6318296 YP_001920463.1 CDS CLH_1069 NC_010723.1 1128411 1129508 D hypothetical protein 1128411..1129508 Clostridium botulinum E3 str. Alaska E43 6317416 YP_001920464.1 CDS CLH_1070 NC_010723.1 1130227 1131276 D hypothetical protein 1130227..1131276 Clostridium botulinum E3 str. Alaska E43 6317643 YP_001920465.1 CDS panE NC_010723.1 1131312 1132241 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 1131312..1132241 Clostridium botulinum E3 str. Alaska E43 6318463 YP_001920466.1 CDS CLH_1072 NC_010723.1 1132463 1132885 D identified by match to protein family HMM PF01047; transcriptional regulator, MarR family 1132463..1132885 Clostridium botulinum E3 str. Alaska E43 6319377 YP_001920467.1 CDS CLH_1073 NC_010723.1 1133163 1133726 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954; RNA polymerase sigma-70 factor family protein 1133163..1133726 Clostridium botulinum E3 str. Alaska E43 6320303 YP_001920468.1 CDS CLH_1074 NC_010723.1 1133719 1134789 D hypothetical protein 1133719..1134789 Clostridium botulinum E3 str. Alaska E43 6317542 YP_001920469.1 CDS CLH_1075 NC_010723.1 1135200 1135760 D identified by match to protein family HMM PF09335; DedA family membrane protein 1135200..1135760 Clostridium botulinum E3 str. Alaska E43 6317705 YP_001920470.1 CDS CLH_1076 NC_010723.1 1135919 1136845 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1135919..1136845 Clostridium botulinum E3 str. Alaska E43 6317917 YP_001920471.1 CDS CLH_1077 NC_010723.1 1137029 1137532 D hypothetical protein 1137029..1137532 Clostridium botulinum E3 str. Alaska E43 6319472 YP_001920472.1 CDS CLH_1078 NC_010723.1 1137652 1138302 R putative lipoprotein complement(1137652..1138302) Clostridium botulinum E3 str. Alaska E43 6317284 YP_001920473.1 CDS CLH_1079 NC_010723.1 1138553 1139002 D identified by match to protein family HMM PF01047; MarR-family transcriptional regulator 1138553..1139002 Clostridium botulinum E3 str. Alaska E43 6318352 YP_001920474.1 CDS fabH NC_010723.1 1139017 1139985 D identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 1139017..1139985 Clostridium botulinum E3 str. Alaska E43 6319557 YP_001920475.1 CDS CLH_1081 NC_010723.1 1140100 1140324 D identified by match to protein family HMM PF00550; acyl carrier protein 1140100..1140324 Clostridium botulinum E3 str. Alaska E43 6320471 YP_001920476.1 CDS CLH_1082 NC_010723.1 1140434 1141375 D identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; enoyl-ACP reductase 1140434..1141375 Clostridium botulinum E3 str. Alaska E43 6317982 YP_001920477.1 CDS fabD NC_010723.1 1141368 1142309 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1141368..1142309 Clostridium botulinum E3 str. Alaska E43 6317273 YP_001920478.1 CDS fabG NC_010723.1 1142330 1143070 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1142330..1143070 Clostridium botulinum E3 str. Alaska E43 6317530 YP_001920479.1 CDS fabF NC_010723.1 1143088 1144329 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-oxoacyl-ACP synthase 1143088..1144329 Clostridium botulinum E3 str. Alaska E43 6320527 YP_001920480.1 CDS accB NC_010723.1 1144341 1144835 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1144341..1144835 Clostridium botulinum E3 str. Alaska E43 6317685 YP_001920481.1 CDS fabZ NC_010723.1 1144841 1145269 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1144841..1145269 Clostridium botulinum E3 str. Alaska E43 6320347 YP_001920482.1 CDS accC NC_010723.1 1145279 1146631 D identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; biotin carboxylase 1145279..1146631 Clostridium botulinum E3 str. Alaska E43 6320282 YP_001920483.1 CDS accD NC_010723.1 1146624 1147499 D identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1146624..1147499 Clostridium botulinum E3 str. Alaska E43 6318254 YP_001920484.1 CDS accA NC_010723.1 1147492 1148316 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1147492..1148316 Clostridium botulinum E3 str. Alaska E43 6318022 YP_001920485.1 CDS CLH_1091 NC_010723.1 1148498 1149439 D identified by glimmer; putative; hypothetical protein 1148498..1149439 Clostridium botulinum E3 str. Alaska E43 6320384 YP_001920486.1 CDS CLH_1092 NC_010723.1 1149473 1149886 D identified by match to protein family HMM PF09021; HutP superfamily 1149473..1149886 Clostridium botulinum E3 str. Alaska E43 6318417 YP_001920487.1 CDS CLH_1093 NC_010723.1 1150307 1151107 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 1150307..1151107 Clostridium botulinum E3 str. Alaska E43 6319129 YP_001920488.1 CDS CLH_1094 NC_010723.1 1151498 1152514 D identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 1151498..1152514 Clostridium botulinum E3 str. Alaska E43 6319667 YP_001920489.1 CDS CLH_1095 NC_010723.1 1152517 1153419 D identified by match to protein family HMM PF02653; ABC transporter 1152517..1153419 Clostridium botulinum E3 str. Alaska E43 6320140 YP_001920490.1 CDS CLH_1096 NC_010723.1 1153385 1154179 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; phosphonates import ATP-binding protein PhnC 2 1153385..1154179 Clostridium botulinum E3 str. Alaska E43 6320205 YP_001920491.1 CDS CLH_1097 NC_010723.1 1154567 1157122 D identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311; selenium-dependent molybdenum hydroxylase 1 1154567..1157122 Clostridium botulinum E3 str. Alaska E43 6317785 YP_001920492.1 CDS CLH_1098 NC_010723.1 1157208 1157885 D hypothetical protein 1157208..1157885 Clostridium botulinum E3 str. Alaska E43 6317789 YP_001920493.1 CDS CLH_1099 NC_010723.1 1157885 1158907 D identified by match to protein family HMM PF00994; molybdopterin biosynthesis protein 1157885..1158907 Clostridium botulinum E3 str. Alaska E43 6320166 YP_001920494.1 CDS moaC NC_010723.1 1158920 1159399 D identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 1158920..1159399 Clostridium botulinum E3 str. Alaska E43 6320382 YP_001920495.1 CDS moaA NC_010723.1 1159460 1160440 D identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 1159460..1160440 Clostridium botulinum E3 str. Alaska E43 6318905 YP_001920496.1 CDS CLH_1102 NC_010723.1 1160443 1160892 D identified by match to protein family HMM PF03473; mosc domain protein 1160443..1160892 Clostridium botulinum E3 str. Alaska E43 6319242 YP_001920497.1 CDS CLH_1103 NC_010723.1 1161068 1161379 D AAA ATPase 1161068..1161379 Clostridium botulinum E3 str. Alaska E43 6318663 YP_001920498.1 CDS CLH_1104 NC_010723.1 1161488 1162720 D hypothetical protein 1161488..1162720 Clostridium botulinum E3 str. Alaska E43 6318988 YP_001920499.1 CDS CLH_1105 NC_010723.1 1162731 1165631 D identified by glimmer; putative; hypothetical protein 1162731..1165631 Clostridium botulinum E3 str. Alaska E43 6319585 YP_001920500.1 CDS CLH_1106 NC_010723.1 1165689 1167392 D identified by glimmer; putative; hypothetical protein 1165689..1167392 Clostridium botulinum E3 str. Alaska E43 6317719 YP_001920501.1 CDS CLH_1107 NC_010723.1 1167393 1168031 D hypothetical protein 1167393..1168031 Clostridium botulinum E3 str. Alaska E43 6319373 YP_001920502.1 CDS CLH_1108 NC_010723.1 1168064 1169308 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1168064..1169308 Clostridium botulinum E3 str. Alaska E43 6318445 YP_001920503.1 CDS CLH_1109 NC_010723.1 1169371 1169592 R identified by match to protein family HMM PF01381; transcriptional regulator, XRE family complement(1169371..1169592) Clostridium botulinum E3 str. Alaska E43 6319680 YP_001920504.1 CDS boNT/E3 NC_010723.1 1170652 1174410 R identified by match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953; botulinum neurotoxin, type E3, BoNT/E3 complement(1170652..1174410) Clostridium botulinum E3 str. Alaska E43 6319260 YP_001920505.1 CDS ntnH NC_010723.1 1174435 1177926 R identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470; botulinum neurotoxin type E3, nontoxic-nonhemagglutinin component, NTNH complement(1174435..1177926) Clostridium botulinum E3 str. Alaska E43 6317343 YP_001920506.1 CDS p47 NC_010723.1 1177942 1179192 R identified by match to protein family HMM PF06597; P-47 protein complement(1177942..1179192) Clostridium botulinum E3 str. Alaska E43 6319057 YP_001920507.1 CDS CLH_1113 NC_010723.1 1179479 1179913 D toxin complex component ORF-X1 1179479..1179913 Clostridium botulinum E3 str. Alaska E43 6318615 YP_001920508.1 CDS CLH_1114 NC_010723.1 1179927 1182173 D toxin complex component ORF-X2 1179927..1182173 Clostridium botulinum E3 str. Alaska E43 6317720 YP_001920509.1 CDS CLH_1115 NC_010723.1 1182205 1183668 D toxin complex component ORF-X3 1182205..1183668 Clostridium botulinum E3 str. Alaska E43 6320433 YP_001920510.1 CDS CLH_1116 NC_010723.1 1184132 1184254 D identified by glimmer; putative; hypothetical protein 1184132..1184254 Clostridium botulinum E3 str. Alaska E43 6320412 YP_001920511.1 CDS CLH_1117 NC_010723.1 1184255 1184380 D identified by glimmer; putative; hypothetical protein 1184255..1184380 Clostridium botulinum E3 str. Alaska E43 6319376 YP_001920512.1 CDS CLH_1118 NC_010723.1 1185603 1186367 D AAA ATPase 1185603..1186367 Clostridium botulinum E3 str. Alaska E43 6317590 YP_001920513.1 CDS CLH_1119 NC_010723.1 1186404 1186847 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein 1186404..1186847 Clostridium botulinum E3 str. Alaska E43 6319215 YP_001920514.1 CDS nifS NC_010723.1 1186851 1188032 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402; cysteine desulfurase NifS 1186851..1188032 Clostridium botulinum E3 str. Alaska E43 6319257 YP_001920515.1 CDS nifU NC_010723.1 1188034 1188471 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419; FeS cluster assembly scaffold protein NifU 1188034..1188471 Clostridium botulinum E3 str. Alaska E43 6318722 YP_001920516.1 CDS mnmA NC_010723.1 1188472 1189557 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1188472..1189557 Clostridium botulinum E3 str. Alaska E43 6319301 YP_001920517.1 CDS CLH_1123 NC_010723.1 1189982 1190482 D identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 1189982..1190482 Clostridium botulinum E3 str. Alaska E43 6318247 YP_001920518.1 CDS CLH_1124 NC_010723.1 1190460 1191491 D identified by match to protein family HMM PF01594; permease 1190460..1191491 Clostridium botulinum E3 str. Alaska E43 6319579 YP_001920519.1 CDS alaS NC_010723.1 1191866 1194505 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1191866..1194505 Clostridium botulinum E3 str. Alaska E43 6317313 YP_001920520.1 CDS CLH_1126 NC_010723.1 1194692 1194949 D identified by match to protein family HMM PF06135; hypothetical protein 1194692..1194949 Clostridium botulinum E3 str. Alaska E43 6320515 YP_001920521.1 CDS CLH_1127 NC_010723.1 1194998 1195411 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1194998..1195411 Clostridium botulinum E3 str. Alaska E43 6319543 YP_001920522.1 CDS CLH_1128 NC_010723.1 1195624 1195890 D identified by match to protein family HMM PF06949; hypothetical protein 1195624..1195890 Clostridium botulinum E3 str. Alaska E43 6317865 YP_001920523.1 CDS CLH_1129 NC_010723.1 1195934 1196398 D identified by match to protein family HMM PF01475; Fur family transcriptional regulator 1195934..1196398 Clostridium botulinum E3 str. Alaska E43 6319200 YP_001920524.1 CDS CLH_1130 NC_010723.1 1196461 1198128 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolising metallo-beta-lactamase family protein 1196461..1198128 Clostridium botulinum E3 str. Alaska E43 6320534 YP_001920525.1 CDS typA NC_010723.1 1198323 1200149 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 1198323..1200149 Clostridium botulinum E3 str. Alaska E43 6317926 YP_001920526.1 CDS CLH_1132 NC_010723.1 1200246 1201274 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1200246..1201274 Clostridium botulinum E3 str. Alaska E43 6318464 YP_001920527.1 CDS CLH_1133 NC_010723.1 1201294 1201938 D identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241; O-methyltransferase family protein 1201294..1201938 Clostridium botulinum E3 str. Alaska E43 6320369 YP_001920528.1 CDS CLH_1134 NC_010723.1 1201945 1203180 D identified by match to protein family HMM PF01136; peptidase U32 1201945..1203180 Clostridium botulinum E3 str. Alaska E43 6317352 YP_001920529.1 CDS CLH_1135 NC_010723.1 1203346 1204860 D identified by match to protein family HMM PF00905; penicillin-binding protein 2 1203346..1204860 Clostridium botulinum E3 str. Alaska E43 6317777 YP_001920530.1 CDS sigK NC_010723.1 1204943 1205641 D sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 1204943..1205641 Clostridium botulinum E3 str. Alaska E43 6317864 YP_001920531.1 CDS CLH_1137 NC_010723.1 1205810 1206841 D identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein 1205810..1206841 Clostridium botulinum E3 str. Alaska E43 6318673 YP_001920532.1 CDS ftsA NC_010723.1 1206934 1208187 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 1206934..1208187 Clostridium botulinum E3 str. Alaska E43 6318293 YP_001920533.1 CDS ftsZ NC_010723.1 1208201 1209343 D identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 1208201..1209343 Clostridium botulinum E3 str. Alaska E43 6317578 YP_001920534.1 CDS spoIIGA NC_010723.1 1209603 1210403 D identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854; sigma-E processing peptidase spoiiga 1209603..1210403 Clostridium botulinum E3 str. Alaska E43 6319306 YP_001920535.1 CDS sigE NC_010723.1 1210415 1211122 D sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1210415..1211122 Clostridium botulinum E3 str. Alaska E43 6320164 YP_001920536.1 CDS sigG NC_010723.1 1211204 1211977 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1211204..1211977 Clostridium botulinum E3 str. Alaska E43 6319747 YP_001920537.1 CDS CLH_1143 NC_010723.1 1212256 1212528 D identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 1212256..1212528 Clostridium botulinum E3 str. Alaska E43 6319485 YP_001920538.1 CDS nrdR NC_010723.1 1212598 1213050 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1212598..1213050 Clostridium botulinum E3 str. Alaska E43 6319632 YP_001920539.1 CDS CLH_1145 NC_010723.1 1213283 1213975 D identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1213283..1213975 Clostridium botulinum E3 str. Alaska E43 6318704 YP_001920540.1 CDS CLH_1146 NC_010723.1 1213987 1214691 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 1213987..1214691 Clostridium botulinum E3 str. Alaska E43 6319859 YP_001920541.1 CDS CLH_1147 NC_010723.1 1214718 1216385 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory histidine kinase 1214718..1216385 Clostridium botulinum E3 str. Alaska E43 6318419 YP_001920542.1 CDS CLH_1148 NC_010723.1 1216669 1217559 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate-binding protein 1216669..1217559 Clostridium botulinum E3 str. Alaska E43 6319381 YP_001920543.1 CDS pstC NC_010723.1 1217582 1218472 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 1217582..1218472 Clostridium botulinum E3 str. Alaska E43 6318794 YP_001920544.1 CDS pstA NC_010723.1 1218472 1219356 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter, permease protein PstA 1218472..1219356 Clostridium botulinum E3 str. Alaska E43 6318747 YP_001920545.1 CDS pstB NC_010723.1 1219370 1220119 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 1219370..1220119 Clostridium botulinum E3 str. Alaska E43 6318506 YP_001920546.1 CDS phoU NC_010723.1 1220138 1220794 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1220138..1220794 Clostridium botulinum E3 str. Alaska E43 6318655 YP_001920547.1 CDS CLH_1153 NC_010723.1 1221016 1222350 D identified by match to protein family HMM PF04459; Fe-S oxidoreductase 1221016..1222350 Clostridium botulinum E3 str. Alaska E43 6320150 YP_001920548.1 CDS engA NC_010723.1 1222350 1223666 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1222350..1223666 Clostridium botulinum E3 str. Alaska E43 6317742 YP_001920549.1 CDS gpsA NC_010723.1 1223669 1224661 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1223669..1224661 Clostridium botulinum E3 str. Alaska E43 6317425 YP_001920550.1 CDS spoIVA NC_010723.1 1224810 1226288 D identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836; stage IV sporulation protein A 1224810..1226288 Clostridium botulinum E3 str. Alaska E43 6318332 YP_001920551.1 CDS CLH_1157 NC_010723.1 1226448 1226870 D putative plasmid-related protein 1226448..1226870 Clostridium botulinum E3 str. Alaska E43 6319190 YP_001920552.1 CDS ansA NC_010723.1 1227021 1228010 D identified by match to protein family HMM PF00710; type II L-asparaginase 1227021..1228010 Clostridium botulinum E3 str. Alaska E43 6317302 YP_001920553.1 CDS CLH_1159 NC_010723.1 1228305 1229672 D identified by match to protein family HMM PF00860; inner membrane protein YicO 1228305..1229672 Clostridium botulinum E3 str. Alaska E43 6317959 YP_001920554.1 CDS CLH_1160 NC_010723.1 1230074 1230955 D identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 1230074..1230955 Clostridium botulinum E3 str. Alaska E43 6318935 YP_001920555.1 CDS CLH_1161 NC_010723.1 1230969 1231238 D identified by match to protein family HMM PF04025; hypothetical protein 1230969..1231238 Clostridium botulinum E3 str. Alaska E43 6318681 YP_001920556.1 CDS gmk NC_010723.1 1231238 1231876 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1231238..1231876 Clostridium botulinum E3 str. Alaska E43 6318375 YP_001920557.1 CDS rpoZ NC_010723.1 1231857 1232057 D identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 1231857..1232057 Clostridium botulinum E3 str. Alaska E43 6319842 YP_001920558.1 CDS coaBC NC_010723.1 1232078 1233256 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1232078..1233256 Clostridium botulinum E3 str. Alaska E43 6319101 YP_001920559.1 CDS priA NC_010723.1 1233320 1235521 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1233320..1235521 Clostridium botulinum E3 str. Alaska E43 6318310 YP_001920560.1 CDS def NC_010723.1 1235534 1235977 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1235534..1235977 Clostridium botulinum E3 str. Alaska E43 6318416 YP_001920561.1 CDS fmt NC_010723.1 1235991 1236920 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1235991..1236920 Clostridium botulinum E3 str. Alaska E43 6320427 YP_001920562.1 CDS CLH_1168 NC_010723.1 1236961 1237638 D identified by match to protein family HMM PF04298; hypothetical protein 1236961..1237638 Clostridium botulinum E3 str. Alaska E43 6320532 YP_001920563.1 CDS sun NC_010723.1 1237656 1238972 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1237656..1238972 Clostridium botulinum E3 str. Alaska E43 6318240 YP_001920564.1 CDS CLH_1170 NC_010723.1 1238987 1240030 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1238987..1240030 Clostridium botulinum E3 str. Alaska E43 6319006 YP_001920565.1 CDS CLH_1171 NC_010723.1 1240032 1240751 D identified by match to protein family HMM PF00481; protein phosphatase PrpC 1240032..1240751 Clostridium botulinum E3 str. Alaska E43 6318881 YP_001920566.1 CDS CLH_1172 NC_010723.1 1240753 1242696 D identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714; serine/threonine-protein kinase PrkC 1240753..1242696 Clostridium botulinum E3 str. Alaska E43 6319206 YP_001920567.1 CDS rsgA NC_010723.1 1242837 1243709 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1242837..1243709 Clostridium botulinum E3 str. Alaska E43 6319103 YP_001920568.1 CDS rpe NC_010723.1 1243703 1244347 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1243703..1244347 Clostridium botulinum E3 str. Alaska E43 6319689 YP_001920569.1 CDS CLH_1175 NC_010723.1 1244356 1244994 D identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 1244356..1244994 Clostridium botulinum E3 str. Alaska E43 6317995 YP_001920570.1 CDS rpmB NC_010723.1 1245256 1245447 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1245256..1245447) Clostridium botulinum E3 str. Alaska E43 6318315 YP_001920571.1 CDS CLH_1177 NC_010723.1 1245645 1245995 D identified by match to protein family HMM PF03780; hypothetical protein 1245645..1245995 Clostridium botulinum E3 str. Alaska E43 6317377 YP_001920572.1 CDS CLH_1178 NC_010723.1 1246009 1247655 D identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599; DAK2 domain-containing protein 1246009..1247655 Clostridium botulinum E3 str. Alaska E43 6319170 YP_001920573.1 CDS recG NC_010723.1 1247721 1249754 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1247721..1249754 Clostridium botulinum E3 str. Alaska E43 6318620 YP_001920574.1 CDS rsmD NC_010723.1 1249817 1250374 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; RNA methyltransferase, RsmD family 1249817..1250374 Clostridium botulinum E3 str. Alaska E43 6318842 YP_001920575.1 CDS coaD NC_010723.1 1250377 1250856 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1250377..1250856 Clostridium botulinum E3 str. Alaska E43 6319647 YP_001920576.1 CDS CLH_1183 NC_010723.1 1250868 1251410 D archaeal/vacuolar-type H+-ATPase subunit H 1250868..1251410 Clostridium botulinum E3 str. Alaska E43 6317667 YP_001920577.1 CDS ylbJ NC_010723.1 1251390 1252565 R identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871; sporulation integral membrane protein YlbJ complement(1251390..1252565) Clostridium botulinum E3 str. Alaska E43 6320061 YP_001920578.1 CDS CLH_1184 NC_010723.1 1252688 1253884 R identified by match to protein family HMM PF05636; hypothetical protein complement(1252688..1253884) Clostridium botulinum E3 str. Alaska E43 6320388 YP_001920579.1 CDS eutD NC_010723.1 1254173 1255171 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 1254173..1255171 Clostridium botulinum E3 str. Alaska E43 6317532 YP_001920580.1 CDS ackA NC_010723.1 1255197 1256393 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1255197..1256393 Clostridium botulinum E3 str. Alaska E43 6317526 YP_001920581.1 CDS CLH_1187 NC_010723.1 1256524 1257030 D identified by match to protein family HMM PF02620; hypothetical protein 1256524..1257030 Clostridium botulinum E3 str. Alaska E43 6317891 YP_001920582.1 CDS rpmF NC_010723.1 1257033 1257215 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1257033..1257215 Clostridium botulinum E3 str. Alaska E43 6317739 YP_001920583.1 CDS plsX NC_010723.1 1257390 1258391 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1257390..1258391 Clostridium botulinum E3 str. Alaska E43 6319032 YP_001920584.1 CDS acpP NC_010723.1 1258480 1258710 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1258480..1258710 Clostridium botulinum E3 str. Alaska E43 6317941 YP_001920585.1 CDS rnc NC_010723.1 1258829 1259527 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1258829..1259527 Clostridium botulinum E3 str. Alaska E43 6320341 YP_001920586.1 CDS CLH_1192 NC_010723.1 1259520 1260542 D identified by match to protein family HMM PF04055; radical SAM superfamily protein 1259520..1260542 Clostridium botulinum E3 str. Alaska E43 6318103 YP_001920587.1 CDS smc NC_010723.1 1260830 1264387 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1260830..1264387 Clostridium botulinum E3 str. Alaska E43 6320191 YP_001920588.1 CDS ftsY NC_010723.1 1264583 1265491 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1264583..1265491 Clostridium botulinum E3 str. Alaska E43 6320470 YP_001920589.1 CDS CLH_1195 NC_010723.1 1265692 1266021 D identified by match to protein family HMM PF04297; match to protein family HMM PF04967; putative DNA-binding protein 1265692..1266021 Clostridium botulinum E3 str. Alaska E43 6319229 YP_001920590.1 CDS ffh NC_010723.1 1266036 1267394 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1266036..1267394 Clostridium botulinum E3 str. Alaska E43 6319051 YP_001920591.1 CDS rpsP NC_010723.1 1267429 1267674 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1267429..1267674 Clostridium botulinum E3 str. Alaska E43 6320581 YP_001920592.1 CDS CLH_1198 NC_010723.1 1267724 1267951 D hypothetical protein 1267724..1267951 Clostridium botulinum E3 str. Alaska E43 6317434 YP_001920593.1 CDS rimM NC_010723.1 1268027 1268524 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1268027..1268524 Clostridium botulinum E3 str. Alaska E43 6317930 YP_001920594.1 CDS trmD NC_010723.1 1268514 1269230 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1268514..1269230 Clostridium botulinum E3 str. Alaska E43 6320461 YP_001920595.1 CDS rplS NC_010723.1 1269353 1269703 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1269353..1269703 Clostridium botulinum E3 str. Alaska E43 6318579 YP_001920596.1 CDS rbgA NC_010723.1 1269817 1270674 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1269817..1270674 Clostridium botulinum E3 str. Alaska E43 6320378 YP_001920597.1 CDS rnhB NC_010723.1 1270667 1271482 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1270667..1271482 Clostridium botulinum E3 str. Alaska E43 6317487 YP_001920598.1 CDS CLH_1204 NC_010723.1 1271528 1271896 R identified by match to protein family HMM PF02021; hypothetical protein complement(1271528..1271896) Clostridium botulinum E3 str. Alaska E43 6318960 YP_001920599.1 CDS CLH_1205 NC_010723.1 1272075 1273595 D identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; Mg chelatase-like protein 1272075..1273595 Clostridium botulinum E3 str. Alaska E43 6319002 YP_001920600.1 CDS dprA NC_010723.1 1273616 1274674 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 1273616..1274674 Clostridium botulinum E3 str. Alaska E43 6318811 YP_001920601.1 CDS topA NC_010723.1 1274725 1276812 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1274725..1276812 Clostridium botulinum E3 str. Alaska E43 6317896 YP_001920602.1 CDS codY NC_010723.1 1277003 1277779 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1277003..1277779 Clostridium botulinum E3 str. Alaska E43 6317980 YP_001920603.1 CDS rpsB NC_010723.1 1278011 1278712 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1278011..1278712 Clostridium botulinum E3 str. Alaska E43 6318818 YP_001920604.1 CDS tsf NC_010723.1 1278895 1279806 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1278895..1279806 Clostridium botulinum E3 str. Alaska E43 6317639 YP_001920605.1 CDS pyrH NC_010723.1 1279915 1280628 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1279915..1280628 Clostridium botulinum E3 str. Alaska E43 6317837 YP_001920606.1 CDS frr NC_010723.1 1280639 1281196 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1280639..1281196 Clostridium botulinum E3 str. Alaska E43 6319663 YP_001920607.1 CDS uppS NC_010723.1 1281295 1282053 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; di-trans,poly-cis-decaprenylcistransferase 1281295..1282053 Clostridium botulinum E3 str. Alaska E43 6319408 YP_001920608.1 CDS cdsA NC_010723.1 1282068 1282862 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1282068..1282862 Clostridium botulinum E3 str. Alaska E43 6317347 YP_001920609.1 CDS CLH_1215 NC_010723.1 1283017 1283988 D identified by match to protein family HMM PF01594; hypothetical protein 1283017..1283988 Clostridium botulinum E3 str. Alaska E43 6317860 YP_001920610.1 CDS dxr NC_010723.1 1284039 1285196 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1284039..1285196 Clostridium botulinum E3 str. Alaska E43 6317268 YP_001920611.1 CDS rseP NC_010723.1 1285203 1286231 D identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP 1285203..1286231 Clostridium botulinum E3 str. Alaska E43 6320484 YP_001920612.1 CDS ispG NC_010723.1 1286243 1287292 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1286243..1287292 Clostridium botulinum E3 str. Alaska E43 6318660 YP_001920613.1 CDS polC NC_010723.1 1287399 1291757 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1287399..1291757 Clostridium botulinum E3 str. Alaska E43 6317386 YP_001920614.1 CDS CLH_1220 NC_010723.1 1292043 1292504 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1292043..1292504 Clostridium botulinum E3 str. Alaska E43 6320197 YP_001920615.1 CDS nusA NC_010723.1 1292522 1293676 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1292522..1293676 Clostridium botulinum E3 str. Alaska E43 6320462 YP_001920616.1 CDS CLH_1222 NC_010723.1 1293691 1293957 D identified by match to protein family HMM PF04296; hypothetical protein 1293691..1293957 Clostridium botulinum E3 str. Alaska E43 6319508 YP_001920617.1 CDS CLH_1223 NC_010723.1 1293950 1294270 D identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein 1293950..1294270 Clostridium botulinum E3 str. Alaska E43 6317996 YP_001920618.1 CDS infB NC_010723.1 1294290 1296353 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1294290..1296353 Clostridium botulinum E3 str. Alaska E43 6317700 YP_001920619.1 CDS rbfA NC_010723.1 1296367 1296717 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1296367..1296717 Clostridium botulinum E3 str. Alaska E43 6320075 YP_001920620.1 CDS CLH_1226 NC_010723.1 1296717 1297694 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 1296717..1297694 Clostridium botulinum E3 str. Alaska E43 6317752 YP_001920621.1 CDS truB NC_010723.1 1297691 1298566 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1297691..1298566 Clostridium botulinum E3 str. Alaska E43 6317303 YP_001920622.1 CDS ribF NC_010723.1 1298583 1299509 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1298583..1299509 Clostridium botulinum E3 str. Alaska E43 6319997 YP_001920623.1 CDS rpsO NC_010723.1 1299626 1299889 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1299626..1299889 Clostridium botulinum E3 str. Alaska E43 6317947 YP_001920624.1 CDS CLH_1230 NC_010723.1 1299970 1302084 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1299970..1302084 Clostridium botulinum E3 str. Alaska E43 6317287 YP_001920625.1 CDS CLH_1231 NC_010723.1 1302363 1303670 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family 1302363..1303670 Clostridium botulinum E3 str. Alaska E43 6320559 YP_001920626.1 CDS CLH_1232 NC_010723.1 1303741 1304022 D identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 1303741..1304022 Clostridium botulinum E3 str. Alaska E43 6319846 YP_001920627.1 CDS CLH_1233 NC_010723.1 1304145 1305344 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1304145..1305344 Clostridium botulinum E3 str. Alaska E43 6319775 YP_001920628.1 CDS clpP NC_010723.1 1305410 1306108 D identified by match to protein family HMM PF00574; match to protein family HMM PF01343; Clp protease 1305410..1306108 Clostridium botulinum E3 str. Alaska E43 6319112 YP_001920629.1 CDS ftsK NC_010723.1 1306227 1308578 D identified by match to protein family HMM PF01580; match to protein family HMM PF09397; DNA translocase FtsK/SpoIIIE 1306227..1308578 Clostridium botulinum E3 str. Alaska E43 6320276 YP_001920630.1 CDS CLH_1236 NC_010723.1 1308680 1310020 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 1308680..1310020 Clostridium botulinum E3 str. Alaska E43 6318719 YP_001920631.1 CDS pgsA NC_010723.1 1310004 1310594 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1310004..1310594 Clostridium botulinum E3 str. Alaska E43 6320093 YP_001920632.1 CDS recA NC_010723.1 1310754 1311824 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1310754..1311824 Clostridium botulinum E3 str. Alaska E43 6320222 YP_001920633.1 CDS CLH_1239 NC_010723.1 1312139 1313683 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1312139..1313683 Clostridium botulinum E3 str. Alaska E43 6319174 YP_001920634.1 CDS spoVS NC_010723.1 1314072 1314332 D identified by match to protein family HMM PF04232; stage V sporulation protein S 1314072..1314332 Clostridium botulinum E3 str. Alaska E43 6317393 YP_001920635.1 CDS CLH_1241 NC_010723.1 1314458 1314718 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; HPr family phosphocarrier protein 1314458..1314718 Clostridium botulinum E3 str. Alaska E43 6317497 YP_001920636.1 CDS CLH_1242 NC_010723.1 1314874 1315098 R identified by match to protein family HMM PF04070; hypothetical protein complement(1314874..1315098) Clostridium botulinum E3 str. Alaska E43 6318617 YP_001920637.1 CDS purB NC_010723.1 1315269 1316699 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1315269..1316699 Clostridium botulinum E3 str. Alaska E43 6318830 YP_001920638.1 CDS CLH_1244 NC_010723.1 1316836 1317819 R identified by glimmer; putative; hypothetical protein complement(1316836..1317819) Clostridium botulinum E3 str. Alaska E43 6318696 YP_001920639.1 CDS CLH_1245 NC_010723.1 1318111 1319319 D identified by match to protein family HMM PF00515; hypothetical protein 1318111..1319319 Clostridium botulinum E3 str. Alaska E43 6318156 YP_001920640.1 CDS ribD NC_010723.1 1319786 1320886 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1319786..1320886 Clostridium botulinum E3 str. Alaska E43 6320502 YP_001920641.1 CDS ribE NC_010723.1 1320901 1321551 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1320901..1321551 Clostridium botulinum E3 str. Alaska E43 6320198 YP_001920642.1 CDS CLH_1248 NC_010723.1 1321718 1322911 D identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribAB 1321718..1322911 Clostridium botulinum E3 str. Alaska E43 6319254 YP_001920643.1 CDS ribH NC_010723.1 1323003 1323464 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1323003..1323464 Clostridium botulinum E3 str. Alaska E43 6318820 YP_001920644.1 CDS CLH_1250 NC_010723.1 1323610 1324371 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DNA-binding protein IolR complement(1323610..1324371) Clostridium botulinum E3 str. Alaska E43 6317944 YP_001920645.1 CDS CLH_1251 NC_010723.1 1324603 1325757 D identified by match to protein family HMM PF00465; NAD-dependent methanol dehydrogenase 1324603..1325757 Clostridium botulinum E3 str. Alaska E43 6320450 YP_001920646.1 CDS CLH_1252 NC_010723.1 1325763 1326614 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1325763..1326614 Clostridium botulinum E3 str. Alaska E43 6320376 YP_001920647.1 CDS CLH_1253 NC_010723.1 1326681 1327700 D identified by match to protein family HMM PF00294; protein IolC 1326681..1327700 Clostridium botulinum E3 str. Alaska E43 6318099 YP_001920648.1 CDS CLH_1254 NC_010723.1 1327716 1328507 D identified by match to protein family HMM PF06845; myo-inositol catabolism protein IolB 1327716..1328507 Clostridium botulinum E3 str. Alaska E43 6318746 YP_001920649.1 CDS CLH_1255 NC_010723.1 1328667 1330598 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; malonic semialdehyde oxidative decarboxylase 1328667..1330598 Clostridium botulinum E3 str. Alaska E43 6320314 YP_001920650.1 CDS CLH_1256 NC_010723.1 1330615 1331628 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; inositol 2-dehydrogenase 1330615..1331628 Clostridium botulinum E3 str. Alaska E43 6320188 YP_001920651.1 CDS CLH_1257 NC_010723.1 1331724 1332620 D identified by match to protein family HMM PF01261; inosose dehydratase 1331724..1332620 Clostridium botulinum E3 str. Alaska E43 6319928 YP_001920652.1 CDS CLH_1258 NC_010723.1 1332738 1334330 D uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; putative symporter YidK 1332738..1334330 Clostridium botulinum E3 str. Alaska E43 6320089 YP_001920653.1 CDS CLH_1259 NC_010723.1 1334576 1334755 R hypothetical protein complement(1334576..1334755) Clostridium botulinum E3 str. Alaska E43 6319674 YP_001920654.1 CDS CLH_1260 NC_010723.1 1334920 1336518 R identified by match to protein family HMM PF07969; exoenzyme regulatory protein AepA complement(1334920..1336518) Clostridium botulinum E3 str. Alaska E43 6317882 YP_001920655.1 CDS CLH_1261 NC_010723.1 1336699 1336935 D identified by glimmer; putative; hypothetical protein 1336699..1336935 Clostridium botulinum E3 str. Alaska E43 6320316 YP_001920656.1 CDS CLH_1262 NC_010723.1 1337022 1337627 D identified by match to protein family HMM PF00293; nudix-family hydrolase 1337022..1337627 Clostridium botulinum E3 str. Alaska E43 6319397 YP_001920657.1 CDS CLH_1263 NC_010723.1 1337764 1339056 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein complement(1337764..1339056) Clostridium botulinum E3 str. Alaska E43 6318495 YP_001920658.1 CDS CLH_1264 NC_010723.1 1339764 1340327 D identified by glimmer; putative; hypothetical protein 1339764..1340327 Clostridium botulinum E3 str. Alaska E43 6319818 YP_001920659.1 CDS CLH_1265 NC_010723.1 1340454 1340594 D identified by glimmer; putative; hypothetical protein 1340454..1340594 Clostridium botulinum E3 str. Alaska E43 6318160 YP_001920660.1 CDS CLH_1266 NC_010723.1 1340975 1342321 R identified by match to protein family HMM PF00654; voltage-gated chloride channel complement(1340975..1342321) Clostridium botulinum E3 str. Alaska E43 6318564 YP_001920661.1 CDS CLH_1267 NC_010723.1 1343484 1344557 D identified by match to protein family HMM PF00465; match to protein family HMM PF01761; glycerol dehydrogenase 1343484..1344557 Clostridium botulinum E3 str. Alaska E43 6320193 YP_001920662.1 CDS CLH_1268 NC_010723.1 1344643 1345203 D teichoic acid phosphorylcholine esterase 1344643..1345203 Clostridium botulinum E3 str. Alaska E43 6317433 YP_001920663.1 CDS CLH_1269 NC_010723.1 1345572 1346195 R hypothetical protein complement(1345572..1346195) Clostridium botulinum E3 str. Alaska E43 6317647 YP_001920664.1 CDS leuA NC_010723.1 1346547 1348226 D identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970; 2-isopropylmalate synthase 1346547..1348226 Clostridium botulinum E3 str. Alaska E43 6317395 YP_001920665.1 CDS CLH_1271 NC_010723.1 1348514 1349164 R hypothetical protein complement(1348514..1349164) Clostridium botulinum E3 str. Alaska E43 6318805 YP_001920666.1 CDS CLH_1272 NC_010723.1 1349480 1350337 D identified by match to protein family HMM PF00149; DNA repair exonuclease family protein 1349480..1350337 Clostridium botulinum E3 str. Alaska E43 6319094 YP_001920667.1 CDS CLH_1273 NC_010723.1 1350458 1351933 D identified by match to protein family HMM PF00560; match to protein family HMM PF01473; cell wall binding domain-containing protein 1350458..1351933 Clostridium botulinum E3 str. Alaska E43 6319104 YP_001920668.1 CDS CLH_1274 NC_010723.1 1352192 1353223 D identified by match to protein family HMM PF05343; aminopeptidase, M42 family 1352192..1353223 Clostridium botulinum E3 str. Alaska E43 6319787 YP_001920669.1 CDS CLH_1275 NC_010723.1 1353567 1353797 D identified by glimmer; putative; hypothetical protein 1353567..1353797 Clostridium botulinum E3 str. Alaska E43 6318892 YP_001920670.1 CDS CLH_1276 NC_010723.1 1354075 1355061 R Fe-S oxidoreductase complement(1354075..1355061) Clostridium botulinum E3 str. Alaska E43 6318439 YP_001920671.1 CDS CLH_1277 NC_010723.1 1355295 1356656 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 1355295..1356656 Clostridium botulinum E3 str. Alaska E43 6319389 YP_001920672.1 CDS CLH_1278 NC_010723.1 1356800 1357189 R identified by glimmer; putative; hypothetical protein complement(1356800..1357189) Clostridium botulinum E3 str. Alaska E43 6317923 YP_001920673.1 CDS CLH_1279 NC_010723.1 1357371 1358327 D identified by match to protein family HMM PF02492; cobalamin synthesis protein CobW 1357371..1358327 Clostridium botulinum E3 str. Alaska E43 6318699 YP_001920674.1 CDS CLH_1280 NC_010723.1 1358342 1358998 D hypothetical protein 1358342..1358998 Clostridium botulinum E3 str. Alaska E43 6319876 YP_001920675.1 CDS CLH_1281 NC_010723.1 1359069 1359992 D identified by match to protein family HMM PF03773; transporter 1359069..1359992 Clostridium botulinum E3 str. Alaska E43 6319136 YP_001920676.1 CDS CLH_1282 NC_010723.1 1360122 1360520 R identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin binding domain-containing protein complement(1360122..1360520) Clostridium botulinum E3 str. Alaska E43 6317559 YP_001920677.1 CDS CLH_1283 NC_010723.1 1360904 1361464 R putative lipoprotein complement(1360904..1361464) Clostridium botulinum E3 str. Alaska E43 6318405 YP_001920678.1 CDS CLH_1284 NC_010723.1 1361595 1362503 R identified by match to protein family HMM PF00892; integral membrane protein domain-containing protein complement(1361595..1362503) Clostridium botulinum E3 str. Alaska E43 6319504 YP_001920679.1 CDS CLH_1285 NC_010723.1 1362701 1362910 D identified by glimmer; putative; hypothetical protein 1362701..1362910 Clostridium botulinum E3 str. Alaska E43 6320310 YP_001920680.1 CDS CLH_1286 NC_010723.1 1363033 1364181 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(1363033..1364181) Clostridium botulinum E3 str. Alaska E43 6317969 YP_001920681.1 CDS CLH_1287 NC_010723.1 1364496 1365938 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; match to protein family HMM PF04851; ATP-dependent RNA helicase DbpA 1364496..1365938 Clostridium botulinum E3 str. Alaska E43 6318001 YP_001920682.1 CDS map NC_010723.1 1366238 1367107 D identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase 1366238..1367107 Clostridium botulinum E3 str. Alaska E43 6317735 YP_001920683.1 CDS CLH_1289 NC_010723.1 1367362 1367499 D identified by glimmer; putative; hypothetical protein 1367362..1367499 Clostridium botulinum E3 str. Alaska E43 6319788 YP_001920684.1 CDS CLH_1290 NC_010723.1 1367673 1369091 D hypothetical protein 1367673..1369091 Clostridium botulinum E3 str. Alaska E43 6318085 YP_001920685.1 CDS CLH_1291 NC_010723.1 1369084 1369770 D identified by glimmer; putative; hypothetical protein 1369084..1369770 Clostridium botulinum E3 str. Alaska E43 6319493 YP_001920686.1 CDS CLH_1292 NC_010723.1 1369772 1372141 D identified by match to protein family HMM PF02463; putative RecF/RecN/SMC N domain 1369772..1372141 Clostridium botulinum E3 str. Alaska E43 6317689 YP_001920687.1 CDS CLH_1293 NC_010723.1 1372304 1372729 D identified by glimmer; putative; hypothetical protein 1372304..1372729 Clostridium botulinum E3 str. Alaska E43 6320333 YP_001920688.1 CDS CLH_1294 NC_010723.1 1373038 1374993 D hypothetical protein 1373038..1374993 Clostridium botulinum E3 str. Alaska E43 6317857 YP_001920689.1 CDS CLH_1295 NC_010723.1 1375077 1375757 D hypothetical protein 1375077..1375757 Clostridium botulinum E3 str. Alaska E43 6317936 YP_001920690.1 CDS CLH_1296 NC_010723.1 1376415 1377671 D Zn-dependent hydrolase 1376415..1377671 Clostridium botulinum E3 str. Alaska E43 6317620 YP_001920691.1 CDS CLH_1297 NC_010723.1 1377650 1378747 D identified by glimmer; putative; hypothetical protein 1377650..1378747 Clostridium botulinum E3 str. Alaska E43 6319395 YP_001920692.1 CDS CLH_1298 NC_010723.1 1378751 1379254 D putative lipoprotein 1378751..1379254 Clostridium botulinum E3 str. Alaska E43 6320548 YP_001920693.1 CDS CLH_1299 NC_010723.1 1379256 1381139 D hypothetical protein 1379256..1381139 Clostridium botulinum E3 str. Alaska E43 6317939 YP_001920694.1 CDS CLH_1300 NC_010723.1 1381624 1382097 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1381624..1382097 Clostridium botulinum E3 str. Alaska E43 6318667 YP_001920695.1 CDS moaF NC_010723.1 1382518 1383327 D MoaF protein 1382518..1383327 Clostridium botulinum E3 str. Alaska E43 6317778 YP_001920696.1 CDS CLH_1302 NC_010723.1 1383503 1383625 D transposase and inactivated derivative 1383503..1383625 Clostridium botulinum E3 str. Alaska E43 6317525 YP_001920697.1 CDS CLH_1303 NC_010723.1 1383757 1383876 D hypothetical protein 1383757..1383876 Clostridium botulinum E3 str. Alaska E43 6317334 YP_001920698.1 CDS CLH_1304 NC_010723.1 1384204 1384464 D identified by glimmer; putative; hypothetical protein 1384204..1384464 Clostridium botulinum E3 str. Alaska E43 6319759 YP_001920699.1 CDS CLH_1305 NC_010723.1 1384579 1384854 D hypothetical protein 1384579..1384854 Clostridium botulinum E3 str. Alaska E43 6320313 YP_001920700.1 CDS CLH_1306 NC_010723.1 1384993 1385388 D identified by glimmer; putative; hypothetical protein 1384993..1385388 Clostridium botulinum E3 str. Alaska E43 6317338 YP_001920701.1 CDS CLH_1307 NC_010723.1 1386210 1386995 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1386210..1386995 Clostridium botulinum E3 str. Alaska E43 6319568 YP_001920702.1 CDS CLH_1308 NC_010723.1 1387017 1387955 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 1387017..1387955 Clostridium botulinum E3 str. Alaska E43 6317257 YP_001920703.1 CDS lctP NC_010723.1 1388238 1389788 D identified by match to protein family HMM PF02652; match to protein family HMM PF03600; match to protein family HMM TIGR00795; L-lactate permease 1388238..1389788 Clostridium botulinum E3 str. Alaska E43 6318616 YP_001920704.1 CDS CLH_1310 NC_010723.1 1389943 1391379 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidase, FAD-binding 1389943..1391379 Clostridium botulinum E3 str. Alaska E43 6318019 YP_001920705.1 CDS CLH_1311 NC_010723.1 1391554 1392693 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-coa dehydrogenase, short-chain specific 1391554..1392693 Clostridium botulinum E3 str. Alaska E43 6318064 YP_001920706.1 CDS CLH_1312 NC_010723.1 1392932 1394671 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1392932..1394671) Clostridium botulinum E3 str. Alaska E43 6317261 YP_001920707.1 CDS katG NC_010723.1 1395028 1397220 D identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 1395028..1397220 Clostridium botulinum E3 str. Alaska E43 6319321 YP_001920708.1 CDS CLH_1314 NC_010723.1 1397875 1398852 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; PTS system mannose/fructose/sorbose family transporter subunit IIB 1397875..1398852 Clostridium botulinum E3 str. Alaska E43 6320561 YP_001920709.1 CDS CLH_1315 NC_010723.1 1398888 1399691 D identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC 1398888..1399691 Clostridium botulinum E3 str. Alaska E43 6318734 YP_001920710.1 CDS CLH_1316 NC_010723.1 1399678 1400622 D identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system mannose/fructose/sorbose family transporter subunit IID 1399678..1400622 Clostridium botulinum E3 str. Alaska E43 6319810 YP_001920711.1 CDS CLH_1317 NC_010723.1 1400829 1401203 D identified by match to protein family HMM PF06115; hypothetical protein 1400829..1401203 Clostridium botulinum E3 str. Alaska E43 6318102 YP_001920712.1 CDS modA NC_010723.1 1401664 1402458 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein 1401664..1402458 Clostridium botulinum E3 str. Alaska E43 6319158 YP_001920713.1 CDS CLH_1319 NC_010723.1 1402508 1403317 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; hypothetical protein 1402508..1403317 Clostridium botulinum E3 str. Alaska E43 6317679 YP_001920714.1 CDS CLH_1320 NC_010723.1 1403338 1404375 D identified by match to protein family HMM PF00005; spermidine/putrescine import ATP-binding protein PotA 1403338..1404375 Clostridium botulinum E3 str. Alaska E43 6318390 YP_001920715.1 CDS CLH_1321 NC_010723.1 1404397 1405131 D hypothetical protein 1404397..1405131 Clostridium botulinum E3 str. Alaska E43 6317985 YP_001920716.1 CDS CLH_1322 NC_010723.1 1405442 1406029 D identified by match to protein family HMM PF09335; hypothetical protein 1405442..1406029 Clostridium botulinum E3 str. Alaska E43 6317614 YP_001920717.1 CDS ade NC_010723.1 1406336 1408081 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase 1406336..1408081 Clostridium botulinum E3 str. Alaska E43 6317262 YP_001920718.1 CDS asnB NC_010723.1 1408347 1409936 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1408347..1409936) Clostridium botulinum E3 str. Alaska E43 6317411 YP_001920719.1 CDS CLH_1325 NC_010723.1 1410612 1411934 R hypothetical protein complement(1410612..1411934) Clostridium botulinum E3 str. Alaska E43 6318742 YP_001920720.1 CDS CLH_1326 NC_010723.1 1412463 1413251 D hypothetical protein 1412463..1413251 Clostridium botulinum E3 str. Alaska E43 6320241 YP_001920721.1 CDS CLH_1327 NC_010723.1 1413451 1414890 D identified by match to protein family HMM PF00999; match to protein family HMM PF02080; trk system potassium uptake protein TrkA 1413451..1414890 Clostridium botulinum E3 str. Alaska E43 6319630 YP_001920722.1 CDS CLH_1328 NC_010723.1 1415276 1415446 D identified by glimmer; putative; hypothetical protein 1415276..1415446 Clostridium botulinum E3 str. Alaska E43 6318365 YP_001920723.1 CDS CLH_1329 NC_010723.1 1415600 1417045 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1415600..1417045 Clostridium botulinum E3 str. Alaska E43 6318675 YP_001920724.1 CDS CLH_1330 NC_010723.1 1417237 1417656 D identified by match to protein family HMM PF01047; MarR-family transcriptional regulator 1417237..1417656 Clostridium botulinum E3 str. Alaska E43 6318557 YP_001920725.1 CDS CLH_1331 NC_010723.1 1417656 1419074 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; MDR-type permease 1417656..1419074 Clostridium botulinum E3 str. Alaska E43 6319195 YP_001920726.1 CDS CLH_1332 NC_010723.1 1419476 1420441 D identified by match to protein family HMM PF01207; dihydrouridine synthase family protein 1419476..1420441 Clostridium botulinum E3 str. Alaska E43 6318218 YP_001920727.1 CDS CLH_1333 NC_010723.1 1420701 1420895 D identified by glimmer; putative; hypothetical protein 1420701..1420895 Clostridium botulinum E3 str. Alaska E43 6317709 YP_001920728.1 CDS CLH_1334 NC_010723.1 1421167 1422642 D identified by match to protein family HMM PF02696; hypothetical protein 1421167..1422642 Clostridium botulinum E3 str. Alaska E43 6319564 YP_001920729.1 CDS CLH_1335 NC_010723.1 1422826 1423245 D hypothetical protein 1422826..1423245 Clostridium botulinum E3 str. Alaska E43 6317432 YP_001920730.1 CDS CLH_1336 NC_010723.1 1423567 1424193 D identified by match to protein family HMM PF09515; thiamine transporter protein 1423567..1424193 Clostridium botulinum E3 str. Alaska E43 6317989 YP_001920731.1 CDS CLH_1337 NC_010723.1 1424165 1424818 D identified by match to protein family HMM PF03070; tena/thi-4 family 1424165..1424818 Clostridium botulinum E3 str. Alaska E43 6318547 YP_001920732.1 CDS CLH_1338 NC_010723.1 1425211 1426488 D identified by match to protein family HMM PF06354; hypothetical protein 1425211..1426488 Clostridium botulinum E3 str. Alaska E43 6319887 YP_001920733.1 CDS CLH_1339 NC_010723.1 1426557 1427309 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1426557..1427309 Clostridium botulinum E3 str. Alaska E43 6318030 YP_001920734.1 CDS CLH_1340 NC_010723.1 1427685 1428890 D identified by match to protein family HMM PF07690; major facilitator family transporter 1427685..1428890 Clostridium botulinum E3 str. Alaska E43 6318356 YP_001920735.1 CDS CLH_1341 NC_010723.1 1429010 1430236 D identified by match to protein family HMM PF07690; major facilitator family transporter 1429010..1430236 Clostridium botulinum E3 str. Alaska E43 6317460 YP_001920736.1 CDS CLH_1344 NC_010723.1 1431903 1432631 D identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA 1431903..1432631 Clostridium botulinum E3 str. Alaska E43 6318851 YP_001920737.1 CDS CLH_1345 NC_010723.1 1433106 1435421 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase, P-type 1433106..1435421 Clostridium botulinum E3 str. Alaska E43 6319952 YP_001920738.1 CDS mgtA NC_010723.1 1436167 1438866 D identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 1436167..1438866 Clostridium botulinum E3 str. Alaska E43 6318769 YP_001920739.1 CDS CLH_1347 NC_010723.1 1439347 1440195 D identified by match to protein family HMM PF00753; Zn-dependent hydrolase 1439347..1440195 Clostridium botulinum E3 str. Alaska E43 6317445 YP_001920740.1 CDS CLH_1348 NC_010723.1 1440270 1440878 D methyltransferase 1440270..1440878 Clostridium botulinum E3 str. Alaska E43 6318573 YP_001920741.1 CDS CLH_1349 NC_010723.1 1441434 1442762 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 1441434..1442762 Clostridium botulinum E3 str. Alaska E43 6317861 YP_001920742.1 CDS CLH_1350 NC_010723.1 1443046 1444956 D identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-coA dehydrogenase 1443046..1444956 Clostridium botulinum E3 str. Alaska E43 6319962 YP_001920743.1 CDS fprA NC_010723.1 1444993 1446192 D identified by match to protein family HMM PF00258; match to protein family HMM PF00753; flavodoxin 1444993..1446192 Clostridium botulinum E3 str. Alaska E43 6318865 YP_001920744.1 CDS CLH_1352 NC_010723.1 1446512 1447081 D hypothetical protein 1446512..1447081 Clostridium botulinum E3 str. Alaska E43 6320145 YP_001920745.1 CDS CLH_1353 NC_010723.1 1447059 1447508 D hypothetical protein 1447059..1447508 Clostridium botulinum E3 str. Alaska E43 6320117 YP_001920746.1 CDS CLH_1354 NC_010723.1 1447511 1448137 D identified by match to protein family HMM PF04647; accessory gene regulator B superfamily 1447511..1448137 Clostridium botulinum E3 str. Alaska E43 6320184 YP_001920747.1 CDS CLH_1355 NC_010723.1 1448173 1448298 D putative autoinducer prepeptide 1448173..1448298 Clostridium botulinum E3 str. Alaska E43 6317316 YP_001920748.1 CDS CLH_1356 NC_010723.1 1448354 1450063 D identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254; ggdef/hd domain protein 1448354..1450063 Clostridium botulinum E3 str. Alaska E43 6317707 YP_001920749.1 CDS CLH_1357 NC_010723.1 1450501 1451997 D identified by match to protein family HMM PF00324; amino acid permease family protein 1450501..1451997 Clostridium botulinum E3 str. Alaska E43 6319354 YP_001920750.1 CDS CLH_1358 NC_010723.1 1452119 1452547 R identified by glimmer; putative; hypothetical protein complement(1452119..1452547) Clostridium botulinum E3 str. Alaska E43 6319816 YP_001920751.1 CDS CLH_1359 NC_010723.1 1452672 1453046 R identified by match to protein family HMM PF00376; transcriptional regulator, MerR family complement(1452672..1453046) Clostridium botulinum E3 str. Alaska E43 6319820 YP_001920752.1 CDS CLH_1360 NC_010723.1 1453232 1454992 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; putative 1-deoxy-D-xylulose-5-phosphate synthase 1453232..1454992 Clostridium botulinum E3 str. Alaska E43 6317772 YP_001920753.1 CDS CLH_1361 NC_010723.1 1455115 1455996 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD-superfamily hydrolase 1455115..1455996 Clostridium botulinum E3 str. Alaska E43 6319219 YP_001920754.1 CDS CLH_1362 NC_010723.1 1456304 1456768 D identified by glimmer; putative; hypothetical protein 1456304..1456768 Clostridium botulinum E3 str. Alaska E43 6318467 YP_001920755.1 CDS CLH_1363 NC_010723.1 1457063 1458775 D identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; sigma-54-dependent transcriptional regulator YgeV 1457063..1458775 Clostridium botulinum E3 str. Alaska E43 6317286 YP_001920756.1 CDS CLH_1364 NC_010723.1 1459101 1460462 D identified by match to protein family HMM PF02667; short-chain fatty acids transporter 1459101..1460462 Clostridium botulinum E3 str. Alaska E43 6320194 YP_001920757.1 CDS CLH_1365 NC_010723.1 1460494 1461423 D identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-coa dehydrogenase 1460494..1461423 Clostridium botulinum E3 str. Alaska E43 6319023 YP_001920758.1 CDS CLH_1366 NC_010723.1 1461484 1463037 D identified by match to protein family HMM PF01144; propionate CoA-transferase 1461484..1463037 Clostridium botulinum E3 str. Alaska E43 6318979 YP_001920759.1 CDS CLH_1367 NC_010723.1 1463508 1464686 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 1 1463508..1464686 Clostridium botulinum E3 str. Alaska E43 6319797 YP_001920760.1 CDS CLH_1368 NC_010723.1 1465097 1466728 D identified by match to protein family HMM PF00728; match to protein family HMM TIGR01634; beta-hexosaminidase 1465097..1466728 Clostridium botulinum E3 str. Alaska E43 6318060 YP_001920761.1 CDS CLH_1369 NC_010723.1 1467025 1468173 D identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 1467025..1468173 Clostridium botulinum E3 str. Alaska E43 6319888 YP_001920762.1 CDS CLH_1370 NC_010723.1 1468441 1469277 D identified by match to protein family HMM PF00376; transcriptional regulatory protein 1468441..1469277 Clostridium botulinum E3 str. Alaska E43 6319915 YP_001920763.1 CDS CLH_1371 NC_010723.1 1469850 1470947 D membrane spanning protein 1469850..1470947 Clostridium botulinum E3 str. Alaska E43 6318006 YP_001920764.1 CDS CLH_1372 NC_010723.1 1470947 1471213 D hypothetical protein 1470947..1471213 Clostridium botulinum E3 str. Alaska E43 6318279 YP_001920765.1 CDS CLH_1373 NC_010723.1 1471238 1471534 D identified by match to protein family HMM PF00936; microcompartments family protein 1471238..1471534 Clostridium botulinum E3 str. Alaska E43 6317803 YP_001920766.1 CDS CLH_1374 NC_010723.1 1471561 1471866 D identified by match to protein family HMM PF00936; propanediol utilization protein PduA 1471561..1471866 Clostridium botulinum E3 str. Alaska E43 6319780 YP_001920767.1 CDS CLH_1375 NC_010723.1 1471942 1473432 D aldehyde-alcohol dehydrogenase 2 1471942..1473432 Clostridium botulinum E3 str. Alaska E43 6318917 YP_001920768.1 CDS CLH_1376 NC_010723.1 1473488 1476028 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate C-acetyltransferase 1473488..1476028 Clostridium botulinum E3 str. Alaska E43 6317714 YP_001920769.1 CDS CLH_1377 NC_010723.1 1476196 1477149 D identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein 1476196..1477149 Clostridium botulinum E3 str. Alaska E43 6318624 YP_001920770.1 CDS CLH_1378 NC_010723.1 1477189 1477542 D identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS-like protein 1477189..1477542 Clostridium botulinum E3 str. Alaska E43 6318324 YP_001920771.1 CDS CLH_1379 NC_010723.1 1477539 1477979 D GTP-binding protein, EutP/PduV family 1477539..1477979 Clostridium botulinum E3 str. Alaska E43 6319642 YP_001920772.1 CDS CLH_1380 NC_010723.1 1477997 1478665 D hypothetical protein 1477997..1478665 Clostridium botulinum E3 str. Alaska E43 6317489 YP_001920773.1 CDS CLH_1381 NC_010723.1 1478647 1479492 D identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ 1478647..1479492 Clostridium botulinum E3 str. Alaska E43 6318221 YP_001920774.1 CDS CLH_1382 NC_010723.1 1479508 1479810 D microcompartments protein 1479508..1479810 Clostridium botulinum E3 str. Alaska E43 6317545 YP_001920775.1 CDS CLH_1383 NC_010723.1 1479807 1480070 D identified by match to protein family HMM PF03319; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1479807..1480070 Clostridium botulinum E3 str. Alaska E43 6317483 YP_001920776.1 CDS CLH_1384 NC_010723.1 1480088 1481416 D identified by match to protein family HMM PF01512; respiratory-chain NADH dehydrogenase domain, 51 kda subunit 1480088..1481416 Clostridium botulinum E3 str. Alaska E43 6318879 YP_001920777.1 CDS CLH_1385 NC_010723.1 1481418 1481966 D identified by match to protein family HMM PF00936; microcompartments protein 1481418..1481966 Clostridium botulinum E3 str. Alaska E43 6318234 YP_001920778.1 CDS CLH_1386 NC_010723.1 1482024 1482686 D identified by match to protein family HMM PF05899; match to protein family HMM PF06249; transcriptional regulator 1482024..1482686 Clostridium botulinum E3 str. Alaska E43 6317838 YP_001920779.1 CDS CLH_1387 NC_010723.1 1482709 1483467 D identified by match to protein family HMM PF00936; microcompartments family protein 1482709..1483467 Clostridium botulinum E3 str. Alaska E43 6319388 YP_001920780.1 CDS CLH_1388 NC_010723.1 1483506 1485065 D identified by match to protein family HMM TIGR02518; acetaldehyde dehydrogenase 1483506..1485065 Clostridium botulinum E3 str. Alaska E43 6318857 YP_001920781.1 CDS CLH_1389 NC_010723.1 1485066 1485716 D identified by match to protein family HMM PF06130; propanediol utilization protein 1485066..1485716 Clostridium botulinum E3 str. Alaska E43 6317879 YP_001920782.1 CDS CLH_1390 NC_010723.1 1485773 1486063 D identified by match to protein family HMM PF00936; microcompartments family protein 1485773..1486063 Clostridium botulinum E3 str. Alaska E43 6319734 YP_001920783.1 CDS CLH_1391 NC_010723.1 1486449 1486838 D identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; iron-binding protein, hemerythrin 1486449..1486838 Clostridium botulinum E3 str. Alaska E43 6319331 YP_001920784.1 CDS CLH_1392 NC_010723.1 1487340 1488734 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inner membrane protein YicO 1487340..1488734 Clostridium botulinum E3 str. Alaska E43 6318186 YP_001920785.1 CDS CLH_1393 NC_010723.1 1489151 1490176 D identified by match to protein family HMM PF01497; putative iron chelate uptake ABC transporter solute-binding protein 1489151..1490176 Clostridium botulinum E3 str. Alaska E43 6319029 YP_001920786.1 CDS CLH_1394 NC_010723.1 1490176 1491258 D identified by match to protein family HMM PF01032; Fe uptake system integral membrane protein 1490176..1491258 Clostridium botulinum E3 str. Alaska E43 6319076 YP_001920787.1 CDS CLH_1395 NC_010723.1 1491258 1492094 D identified by match to protein family HMM PF00005; iron chelate uptake ABC transporter, FeCT family, ATP-binding protein 1491258..1492094 Clostridium botulinum E3 str. Alaska E43 6319940 YP_001920788.1 CDS CLH_1396 NC_010723.1 1492184 1492330 D identified by glimmer; putative; hypothetical protein 1492184..1492330 Clostridium botulinum E3 str. Alaska E43 6317746 YP_001920789.1 CDS CLH_1397 NC_010723.1 1492416 1493519 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; cold-shock deAd box protein a complement(1492416..1493519) Clostridium botulinum E3 str. Alaska E43 6319592 YP_001920790.1 CDS CLH_1398 NC_010723.1 1494141 1494293 D hypothetical protein 1494141..1494293 Clostridium botulinum E3 str. Alaska E43 6318633 YP_001920791.1 CDS CLH_1399 NC_010723.1 1494431 1494583 D identified by glimmer; putative; hypothetical protein 1494431..1494583 Clostridium botulinum E3 str. Alaska E43 6320547 YP_001920792.1 CDS CLH_1400 NC_010723.1 1494609 1498316 R identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453; collagenase complement(1494609..1498316) Clostridium botulinum E3 str. Alaska E43 6318504 YP_001920793.1 CDS CLH_1401 NC_010723.1 1498774 1499961 D identified by glimmer; putative; hypothetical protein 1498774..1499961 Clostridium botulinum E3 str. Alaska E43 6319655 YP_001920794.1 CDS CLH_1402 NC_010723.1 1500073 1501092 R identified by match to protein family HMM PF01757; acyltransferase family protein complement(1500073..1501092) Clostridium botulinum E3 str. Alaska E43 6319341 YP_001920795.1 CDS CLH_1403 NC_010723.1 1501315 1502538 D methyltransferase 1501315..1502538 Clostridium botulinum E3 str. Alaska E43 6320395 YP_001920796.1 CDS CLH_1404 NC_010723.1 1502798 1504114 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 1502798..1504114 Clostridium botulinum E3 str. Alaska E43 6320615 YP_001920797.1 CDS CLH_1405 NC_010723.1 1504629 1505465 D hypothetical protein 1504629..1505465 Clostridium botulinum E3 str. Alaska E43 6317802 YP_001920798.1 CDS CLH_1406 NC_010723.1 1505772 1506062 D identified by match to protein family HMM PF01910; hypothetical protein 1505772..1506062 Clostridium botulinum E3 str. Alaska E43 6317792 YP_001920799.1 CDS CLH_1407 NC_010723.1 1506250 1508607 D identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase domain-containing protein 1506250..1508607 Clostridium botulinum E3 str. Alaska E43 6318731 YP_001920800.1 CDS CLH_1408 NC_010723.1 1508836 1509018 R hypothetical protein complement(1508836..1509018) Clostridium botulinum E3 str. Alaska E43 6318789 YP_001920801.1 CDS CLH_1409 NC_010723.1 1509259 1509966 D putative F pilin acetylation protein 1509259..1509966 Clostridium botulinum E3 str. Alaska E43 6320221 YP_001920802.1 CDS CLH_1410 NC_010723.1 1510267 1510569 D hypothetical protein 1510267..1510569 Clostridium botulinum E3 str. Alaska E43 6317794 YP_001920803.1 CDS CLH_1411 NC_010723.1 1510624 1510887 D identified by glimmer; putative; hypothetical protein 1510624..1510887 Clostridium botulinum E3 str. Alaska E43 6320285 YP_001920804.1 CDS CLH_1412 NC_010723.1 1510977 1511267 D hypothetical protein 1510977..1511267 Clostridium botulinum E3 str. Alaska E43 6317573 YP_001920805.1 CDS CLH_1413 NC_010723.1 1511316 1511897 D identified by glimmer; putative; hypothetical protein 1511316..1511897 Clostridium botulinum E3 str. Alaska E43 6319199 YP_001920806.1 CDS CLH_1414 NC_010723.1 1512034 1513380 D identified by match to protein family HMM PF02056; glycosyl hydrolase family protein 1512034..1513380 Clostridium botulinum E3 str. Alaska E43 6317358 YP_001920807.1 CDS CLH_1415 NC_010723.1 1513699 1516440 D identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; NtrC family Transcriptional regulator, ATPase domain 1513699..1516440 Clostridium botulinum E3 str. Alaska E43 6318930 YP_001920808.1 CDS CLH_1416 NC_010723.1 1516727 1517038 D identified by match to protein family HMM PF02302; PTS system, lactose/cellobiose-specific family, IIB component 1516727..1517038 Clostridium botulinum E3 str. Alaska E43 6319973 YP_001920809.1 CDS CLH_1417 NC_010723.1 1517061 1517375 D identified by match to protein family HMM PF02255; PTS system lactose/cellobiose-specific transporter subunit IIA 1517061..1517375 Clostridium botulinum E3 str. Alaska E43 6319496 YP_001920810.1 CDS CLH_1418 NC_010723.1 1517457 1518191 D identified by match to protein family HMM PF01869; ATPase family protein 1517457..1518191 Clostridium botulinum E3 str. Alaska E43 6318984 YP_001920811.1 CDS CLH_1419 NC_010723.1 1518332 1519441 D identified by match to protein family HMM PF05913; outer surface protein 1518332..1519441 Clostridium botulinum E3 str. Alaska E43 6318632 YP_001920812.1 CDS CLH_1420 NC_010723.1 1519488 1520756 D identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system, lactose/cellobiose family IIC component 1519488..1520756 Clostridium botulinum E3 str. Alaska E43 6318264 YP_001920813.1 CDS CLH_1421 NC_010723.1 1521147 1521953 D identified by match to protein family HMM PF02588; membrane protein 1521147..1521953 Clostridium botulinum E3 str. Alaska E43 6318157 YP_001920814.1 CDS CLH_1422 NC_010723.1 1522017 1522664 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 1522017..1522664 Clostridium botulinum E3 str. Alaska E43 6317945 YP_001920815.1 CDS CLH_1423 NC_010723.1 1522654 1524027 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1522654..1524027 Clostridium botulinum E3 str. Alaska E43 6317622 YP_001920816.1 CDS CLH_1424 NC_010723.1 1524063 1526369 D putative lipoprotein 1524063..1526369 Clostridium botulinum E3 str. Alaska E43 6319919 YP_001920817.1 CDS CLH_1425 NC_010723.1 1526845 1529370 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase, P-type 1526845..1529370 Clostridium botulinum E3 str. Alaska E43 6317994 YP_001920818.1 CDS CLH_1426 NC_010723.1 1529638 1530090 D identified by match to protein family HMM PF00583; spermine/spermidine acetyltransferase 1529638..1530090 Clostridium botulinum E3 str. Alaska E43 6319978 YP_001920819.1 CDS CLH_1427 NC_010723.1 1530387 1531724 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(1530387..1531724) Clostridium botulinum E3 str. Alaska E43 6317723 YP_001920820.1 CDS CLH_1428 NC_010723.1 1532088 1532234 R hypothetical protein complement(1532088..1532234) Clostridium botulinum E3 str. Alaska E43 6317610 YP_001920821.1 CDS CLH_1429 NC_010723.1 1532556 1534436 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 1532556..1534436 Clostridium botulinum E3 str. Alaska E43 6318908 YP_001920822.1 CDS CLH_1430 NC_010723.1 1534525 1535937 D identified by match to protein family HMM PF00232; beta-glucosidase 1534525..1535937 Clostridium botulinum E3 str. Alaska E43 6318498 YP_001920823.1 CDS CLH_1431 NC_010723.1 1535977 1536810 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator LicT 1535977..1536810 Clostridium botulinum E3 str. Alaska E43 6319677 YP_001920824.1 CDS CLH_1432 NC_010723.1 1537291 1537488 D hypothetical protein 1537291..1537488 Clostridium botulinum E3 str. Alaska E43 6317264 YP_001920825.1 CDS CLH_1433 NC_010723.1 1537659 1538306 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite reductase 1537659..1538306 Clostridium botulinum E3 str. Alaska E43 6317859 YP_001920826.1 CDS CLH_1434 NC_010723.1 1538597 1538842 D identified by match to protein family HMM PF08281; ECF subfamily RNA polymerase sigma-70 factor 1538597..1538842 Clostridium botulinum E3 str. Alaska E43 6318195 YP_001920827.1 CDS CLH_1435 NC_010723.1 1538823 1539785 D hypothetical protein 1538823..1539785 Clostridium botulinum E3 str. Alaska E43 6320258 YP_001920828.1 CDS CLH_1436 NC_010723.1 1540046 1540867 D identified by match to protein family HMM PF00015; putative methyl-accepting chemotaxis protein 1540046..1540867 Clostridium botulinum E3 str. Alaska E43 6319523 YP_001920829.1 CDS CLH_1437 NC_010723.1 1541171 1541941 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1541171..1541941 Clostridium botulinum E3 str. Alaska E43 6317893 YP_001920830.1 CDS CLH_1438 NC_010723.1 1541992 1542303 R identified by glimmer; putative; hypothetical protein complement(1541992..1542303) Clostridium botulinum E3 str. Alaska E43 6317641 YP_001920831.1 CDS rbsK NC_010723.1 1542567 1543496 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 1542567..1543496 Clostridium botulinum E3 str. Alaska E43 6317597 YP_001920832.1 CDS CLH_1440 NC_010723.1 1543502 1543897 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1543502..1543897 Clostridium botulinum E3 str. Alaska E43 6317298 YP_001920833.1 CDS CLH_1441 NC_010723.1 1543912 1545414 D identified by match to protein family HMM PF00005; ribose import ATP-binding protein RbsA 1543912..1545414 Clostridium botulinum E3 str. Alaska E43 6317431 YP_001920834.1 CDS CLH_1442 NC_010723.1 1545431 1546366 D identified by match to protein family HMM PF02653; ribose transport system permease RbsC 1545431..1546366 Clostridium botulinum E3 str. Alaska E43 6320026 YP_001920835.1 CDS CLH_1443 NC_010723.1 1546391 1547293 D identified by match to protein family HMM PF00532; D-ribose-binding protein 1546391..1547293 Clostridium botulinum E3 str. Alaska E43 6320413 YP_001920836.1 CDS CLH_1444 NC_010723.1 1547345 1548340 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator, LacI family 1547345..1548340 Clostridium botulinum E3 str. Alaska E43 6318194 YP_001920837.1 CDS CLH_1445 NC_010723.1 1548573 1549001 R identified by match to protein family HMM PF06094; hypothetical protein complement(1548573..1549001) Clostridium botulinum E3 str. Alaska E43 6317776 YP_001920838.1 CDS pcp NC_010723.1 1549001 1549642 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1549001..1549642) Clostridium botulinum E3 str. Alaska E43 6320219 YP_001920839.1 CDS CLH_1447 NC_010723.1 1550117 1551046 R identified by match to protein family HMM PF06166; permease complement(1550117..1551046) Clostridium botulinum E3 str. Alaska E43 6319654 YP_001920840.1 CDS CLH_1448 NC_010723.1 1551065 1551736 R identified by match to protein family HMM PF06149; permease complement(1551065..1551736) Clostridium botulinum E3 str. Alaska E43 6318474 YP_001920841.1 CDS CLH_1449 NC_010723.1 1552125 1553114 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 1552125..1553114 Clostridium botulinum E3 str. Alaska E43 6320220 YP_001920842.1 CDS CLH_1450 NC_010723.1 1553314 1554483 D identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS aminotransferase 1553314..1554483 Clostridium botulinum E3 str. Alaska E43 6320230 YP_001920843.1 CDS CLH_1451 NC_010723.1 1554750 1555457 D identified by match to protein family HMM PF02348; N-acylneuraminate cytidylyltransferase 1554750..1555457 Clostridium botulinum E3 str. Alaska E43 6318541 YP_001920844.1 CDS CLH_1452 NC_010723.1 1555450 1556592 D hypothetical protein 1555450..1556592 Clostridium botulinum E3 str. Alaska E43 6317265 YP_001920845.1 CDS CLH_1453 NC_010723.1 1556851 1557873 D hypothetical protein 1556851..1557873 Clostridium botulinum E3 str. Alaska E43 6319090 YP_001920846.1 CDS CLH_1454 NC_010723.1 1558010 1558315 D identified by glimmer; putative; hypothetical protein 1558010..1558315 Clostridium botulinum E3 str. Alaska E43 6319509 YP_001920847.1 CDS CLH_1455 NC_010723.1 1558523 1558855 D hypothetical protein 1558523..1558855 Clostridium botulinum E3 str. Alaska E43 6318461 YP_001920848.1 CDS CLH_1456 NC_010723.1 1558954 1560678 D identified by match to protein family HMM PF01973; hypothetical protein 1558954..1560678 Clostridium botulinum E3 str. Alaska E43 6318804 YP_001920849.1 CDS CLH_1457 NC_010723.1 1560767 1560961 D identified by glimmer; putative; hypothetical protein 1560767..1560961 Clostridium botulinum E3 str. Alaska E43 6320192 YP_001920850.1 CDS CLH_1458 NC_010723.1 1560973 1561278 D identified by glimmer; putative; hypothetical protein 1560973..1561278 Clostridium botulinum E3 str. Alaska E43 6318309 YP_001920851.1 CDS CLH_1459 NC_010723.1 1561297 1561605 D identified by glimmer; putative; hypothetical protein 1561297..1561605 Clostridium botulinum E3 str. Alaska E43 6319313 YP_001920852.1 CDS CLH_1460 NC_010723.1 1561643 1561933 D hypothetical protein 1561643..1561933 Clostridium botulinum E3 str. Alaska E43 6319857 YP_001920853.1 CDS CLH_1461 NC_010723.1 1562005 1563048 D identified by match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyl transferase 1562005..1563048 Clostridium botulinum E3 str. Alaska E43 6317621 YP_001920854.1 CDS CLH_1462 NC_010723.1 1563313 1563822 R identified by match to protein family HMM PF00583; putative acetyltransferase complement(1563313..1563822) Clostridium botulinum E3 str. Alaska E43 6318840 YP_001920855.1 CDS CLH_1463 NC_010723.1 1564020 1565165 D identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 1564020..1565165 Clostridium botulinum E3 str. Alaska E43 6319763 YP_001920856.1 CDS CLH_1464 NC_010723.1 1565155 1565829 D identified by match to protein family HMM PF02585; GlcNAc-PI de-N-acetylase family 1565155..1565829 Clostridium botulinum E3 str. Alaska E43 6317371 YP_001920857.1 CDS CLH_1465 NC_010723.1 1565842 1566795 D identified by glimmer; putative; hypothetical protein 1565842..1566795 Clostridium botulinum E3 str. Alaska E43 6319160 YP_001920858.1 CDS CLH_1466 NC_010723.1 1566834 1567838 D identified by match to protein family HMM PF03102; match to protein family HMM PF08666; spore coat polysaccharide biosynthesis protein SpsE 1566834..1567838 Clostridium botulinum E3 str. Alaska E43 6319939 YP_001920859.1 CDS CLH_1467 NC_010723.1 1567985 1568440 R identified by match to protein family HMM PF04657; hypothetical protein complement(1567985..1568440) Clostridium botulinum E3 str. Alaska E43 6317922 YP_001920860.1 CDS CLH_1468 NC_010723.1 1568459 1568881 R hypothetical protein complement(1568459..1568881) Clostridium botulinum E3 str. Alaska E43 6320355 YP_001920861.1 CDS CLH_1469 NC_010723.1 1569043 1569405 D hypothetical protein 1569043..1569405 Clostridium botulinum E3 str. Alaska E43 6318928 YP_001920862.1 CDS CLH_1470 NC_010723.1 1569689 1570375 D identified by match to protein family HMM PF00027; cNMP-binding regulatory protein 1569689..1570375 Clostridium botulinum E3 str. Alaska E43 6320244 YP_001920863.1 CDS CLH_1471 NC_010723.1 1570437 1571396 R identified by match to protein family HMM PF01699; putative cation antiporter complement(1570437..1571396) Clostridium botulinum E3 str. Alaska E43 6317481 YP_001920864.1 CDS CLH_1472 NC_010723.1 1571986 1572852 D identified by match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 1571986..1572852 Clostridium botulinum E3 str. Alaska E43 6319951 YP_001920865.1 CDS CLH_1473 NC_010723.1 1572879 1573166 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase 1572879..1573166 Clostridium botulinum E3 str. Alaska E43 6319911 YP_001920866.1 CDS CLH_1474 NC_010723.1 1573498 1574403 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1573498..1574403 Clostridium botulinum E3 str. Alaska E43 6318020 YP_001920867.1 CDS CLH_1475 NC_010723.1 1574734 1575909 D methyltransferase 1574734..1575909 Clostridium botulinum E3 str. Alaska E43 6318412 YP_001920868.1 CDS CLH_1476 NC_010723.1 1576108 1576650 D identified by glimmer; putative; hypothetical protein 1576108..1576650 Clostridium botulinum E3 str. Alaska E43 6319283 YP_001920869.1 CDS CLH_1477 NC_010723.1 1576904 1577050 R identified by glimmer; putative; hypothetical protein complement(1576904..1577050) Clostridium botulinum E3 str. Alaska E43 6319852 YP_001920870.1 CDS CLH_1478 NC_010723.1 1577144 1577995 R identified by match to protein family HMM PF00165; match to protein family HMM PF07883; AraC-type DNA-binding domain-containing protein, transcriptional regulator complement(1577144..1577995) Clostridium botulinum E3 str. Alaska E43 6320240 YP_001920871.1 CDS CLH_1479 NC_010723.1 1578001 1578126 D identified by glimmer; putative; hypothetical protein 1578001..1578126 Clostridium botulinum E3 str. Alaska E43 6319664 YP_001920872.1 CDS CLH_1480 NC_010723.1 1578195 1579427 D identified by match to protein family HMM PF00375; H+/sodium:glutamate symporter 1578195..1579427 Clostridium botulinum E3 str. Alaska E43 6319326 YP_001920873.1 CDS CLH_1481 NC_010723.1 1579558 1580373 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase 1579558..1580373 Clostridium botulinum E3 str. Alaska E43 6318216 YP_001920874.1 CDS CLH_1482 NC_010723.1 1580601 1581686 D identified by match to protein family HMM PF01966; HD-GYP hydrolase domain containing protein 1580601..1581686 Clostridium botulinum E3 str. Alaska E43 6320261 YP_001920875.1 CDS CLH_1483 NC_010723.1 1581932 1582804 D identified by match to protein family HMM PF03446; 2-hydroxy-3-oxopropionate reductase 1581932..1582804 Clostridium botulinum E3 str. Alaska E43 6319340 YP_001920876.1 CDS CLH_1484 NC_010723.1 1583031 1584038 R identified by match to protein family HMM PF00291; cysteine synthase complement(1583031..1584038) Clostridium botulinum E3 str. Alaska E43 6320233 YP_001920877.1 CDS CLH_1485 NC_010723.1 1584463 1585851 D hypothetical protein 1584463..1585851 Clostridium botulinum E3 str. Alaska E43 6318568 YP_001920878.1 CDS alr NC_010723.1 1586031 1587191 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1586031..1587191) Clostridium botulinum E3 str. Alaska E43 6318202 YP_001920879.1 CDS CLH_1487 NC_010723.1 1587313 1588773 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR-family transcriptional regulator complement(1587313..1588773) Clostridium botulinum E3 str. Alaska E43 6317999 YP_001920880.1 CDS CLH_1488 NC_010723.1 1589044 1590426 D hypothetical protein 1589044..1590426 Clostridium botulinum E3 str. Alaska E43 6320268 YP_001920881.1 CDS CLH_1489 NC_010723.1 1590560 1590847 D identified by match to protein family HMM PF04456; hypothetical protein 1590560..1590847 Clostridium botulinum E3 str. Alaska E43 6319960 YP_001920882.1 CDS CLH_1490 NC_010723.1 1590863 1591819 D identified by match to protein family HMM PF06081; membrane spanning protein 1590863..1591819 Clostridium botulinum E3 str. Alaska E43 6317427 YP_001920883.1 CDS CLH_1491 NC_010723.1 1591962 1592480 D identified by glimmer; putative; hypothetical protein 1591962..1592480 Clostridium botulinum E3 str. Alaska E43 6317378 YP_001920884.1 CDS CLH_1492 NC_010723.1 1592658 1593392 R identified by match to protein family HMM PF00392; transcriptional regulatory protein complement(1592658..1593392) Clostridium botulinum E3 str. Alaska E43 6320551 YP_001920885.1 CDS udp NC_010723.1 1594058 1594840 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR01718; uridine phosphorylase 1594058..1594840 Clostridium botulinum E3 str. Alaska E43 6318077 YP_001920886.1 CDS CLH_1494 NC_010723.1 1595026 1596228 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; nucleoside permease NupC 1595026..1596228 Clostridium botulinum E3 str. Alaska E43 6318151 YP_001920887.1 CDS deoB NC_010723.1 1596411 1597601 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1596411..1597601 Clostridium botulinum E3 str. Alaska E43 6318371 YP_001920888.1 CDS CLH_1496 NC_010723.1 1597826 1598641 D identified by match to protein family HMM PF00456; transketolase 1597826..1598641 Clostridium botulinum E3 str. Alaska E43 6320013 YP_001920889.1 CDS CLH_1497 NC_010723.1 1598654 1599580 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase 1598654..1599580 Clostridium botulinum E3 str. Alaska E43 6318127 YP_001920890.1 CDS deoD NC_010723.1 1599653 1600360 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1599653..1600360 Clostridium botulinum E3 str. Alaska E43 6320421 YP_001920891.1 CDS CLH_1499 NC_010723.1 1600537 1601181 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase 1600537..1601181 Clostridium botulinum E3 str. Alaska E43 6319701 YP_001920892.1 CDS CLH_1500 NC_010723.1 1601707 1603857 D identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 1601707..1603857 Clostridium botulinum E3 str. Alaska E43 6319917 YP_001920893.1 CDS CLH_1501 NC_010723.1 1604226 1604540 D hypothetical protein 1604226..1604540 Clostridium botulinum E3 str. Alaska E43 6319179 YP_001920894.1 CDS CLH_1502 NC_010723.1 1604781 1606154 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; Na+-driven multidrug efflux pump complement(1604781..1606154) Clostridium botulinum E3 str. Alaska E43 6320514 YP_001920895.1 CDS CLH_1503 NC_010723.1 1606584 1608248 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily protein 1606584..1608248 Clostridium botulinum E3 str. Alaska E43 6317281 YP_001920896.1 CDS CLH_1504 NC_010723.1 1608738 1611245 D identified by glimmer; putative; hypothetical protein 1608738..1611245 Clostridium botulinum E3 str. Alaska E43 6319609 YP_001920897.1 CDS CLH_1505 NC_010723.1 1611273 1612031 D putative viral A-type inclusion protein 1611273..1612031 Clostridium botulinum E3 str. Alaska E43 6317534 YP_001920898.1 CDS CLH_1506 NC_010723.1 1612038 1613807 D hypothetical protein 1612038..1613807 Clostridium botulinum E3 str. Alaska E43 6318059 YP_001920899.1 CDS CLH_1507 NC_010723.1 1613844 1615646 D identified by match to protein family HMM PF01926; putative GTPase 1613844..1615646 Clostridium botulinum E3 str. Alaska E43 6318807 YP_001920900.1 CDS CLH_1508 NC_010723.1 1616159 1617343 D identified by match to protein family HMM PF01041; spore coat polysaccharide biosynthesis protein SpsC 1616159..1617343 Clostridium botulinum E3 str. Alaska E43 6318773 YP_001920901.1 CDS CLH_1509 NC_010723.1 1617953 1619113 D identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; transcriptional regulator 1617953..1619113 Clostridium botulinum E3 str. Alaska E43 6319447 YP_001920902.1 CDS CLH_1510 NC_010723.1 1619306 1619665 D identified by glimmer; putative; hypothetical protein 1619306..1619665 Clostridium botulinum E3 str. Alaska E43 6318320 YP_001920903.1 CDS CLH_1511 NC_010723.1 1619780 1619962 D TrpF 1619780..1619962 Clostridium botulinum E3 str. Alaska E43 6319372 YP_001920904.1 CDS CLH_1512 NC_010723.1 1620160 1620699 D amidase 1620160..1620699 Clostridium botulinum E3 str. Alaska E43 6319819 YP_001920905.1 CDS CLH_1513 NC_010723.1 1620927 1621742 R putative viral A-type inclusion protein complement(1620927..1621742) Clostridium botulinum E3 str. Alaska E43 6318337 YP_001920906.1 CDS CLH_1514 NC_010723.1 1621913 1623739 D identified by match to protein family HMM PF00082; putative spore-cortex-lytic enzyme 1621913..1623739 Clostridium botulinum E3 str. Alaska E43 6317561 YP_001920907.1 CDS CLH_1515 NC_010723.1 1623726 1625447 D identified by match to protein family HMM PF00082; putative spore-cortex-lytic enzyme 1623726..1625447 Clostridium botulinum E3 str. Alaska E43 6320366 YP_001920908.1 CDS CLH_1516 NC_010723.1 1625609 1627009 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 1625609..1627009 Clostridium botulinum E3 str. Alaska E43 6319547 YP_001920909.1 CDS CLH_1517 NC_010723.1 1627365 1628693 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 1627365..1628693 Clostridium botulinum E3 str. Alaska E43 6320437 YP_001920910.1 CDS gshAB NC_010723.1 1628677 1630980 D Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 1628677..1630980 Clostridium botulinum E3 str. Alaska E43 6318472 YP_001920911.1 CDS CLH_1519 NC_010723.1 1631248 1631757 D identified by match to protein family HMM PF00293; nudix-family protein 1631248..1631757 Clostridium botulinum E3 str. Alaska E43 6317638 YP_001920912.1 CDS CLH_1520 NC_010723.1 1631847 1633202 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; putative integral membrane protein complement(1631847..1633202) Clostridium botulinum E3 str. Alaska E43 6319494 YP_001920913.1 CDS CLH_1521 NC_010723.1 1633404 1633715 R hypothetical protein complement(1633404..1633715) Clostridium botulinum E3 str. Alaska E43 6318457 YP_001920914.1 CDS CLH_1522 NC_010723.1 1634088 1634732 D hypothetical protein 1634088..1634732 Clostridium botulinum E3 str. Alaska E43 6317503 YP_001920915.1 CDS CLH_1523 NC_010723.1 1635190 1635729 D identified by glimmer; putative; hypothetical protein 1635190..1635729 Clostridium botulinum E3 str. Alaska E43 6318964 YP_001920916.1 CDS CLH_1524 NC_010723.1 1635716 1636114 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1635716..1636114 Clostridium botulinum E3 str. Alaska E43 6320604 YP_001920917.1 CDS CLH_1525 NC_010723.1 1636098 1636994 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1636098..1636994 Clostridium botulinum E3 str. Alaska E43 6318260 YP_001920918.1 CDS CLH_1526 NC_010723.1 1636975 1638024 D hypothetical protein 1636975..1638024 Clostridium botulinum E3 str. Alaska E43 6318005 YP_001920919.1 CDS CLH_1527 NC_010723.1 1638222 1638377 R identified by glimmer; putative; hypothetical protein complement(1638222..1638377) Clostridium botulinum E3 str. Alaska E43 6320509 YP_001920920.1 CDS CLH_1528 NC_010723.1 1638371 1638661 D identified by glimmer; putative; hypothetical protein 1638371..1638661 Clostridium botulinum E3 str. Alaska E43 6319627 YP_001920921.1 CDS rluB NC_010723.1 1639018 1639728 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1639018..1639728 Clostridium botulinum E3 str. Alaska E43 6318497 YP_001920922.1 CDS CLH_1530 NC_010723.1 1639903 1640808 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR-family transcriptional regulator 1639903..1640808 Clostridium botulinum E3 str. Alaska E43 6320092 YP_001920923.1 CDS CLH_1531 NC_010723.1 1640949 1642247 D identified by match to protein family HMM PF01743; tRNA nucleotidyltransferase/poly(A) polymerase family protein 1640949..1642247 Clostridium botulinum E3 str. Alaska E43 6319025 YP_001920924.1 CDS CLH_1532 NC_010723.1 1642266 1642544 D hypothetical protein 1642266..1642544 Clostridium botulinum E3 str. Alaska E43 6319629 YP_001920925.1 CDS CLH_1533 NC_010723.1 1642841 1643803 D alpha/beta hydrolase 1642841..1643803 Clostridium botulinum E3 str. Alaska E43 6317748 YP_001920926.1 CDS CLH_1534 NC_010723.1 1644038 1644925 D identified by match to protein family HMM PF04055; radical SAM domain protein 1644038..1644925 Clostridium botulinum E3 str. Alaska E43 6319517 YP_001920927.1 CDS CLH_1535 NC_010723.1 1644998 1645228 D identified by glimmer; putative; hypothetical protein 1644998..1645228 Clostridium botulinum E3 str. Alaska E43 6317571 YP_001920928.1 CDS CLH_1536 NC_010723.1 1645498 1646019 D identified by match to protein family HMM PF04307; hypothetical protein 1645498..1646019 Clostridium botulinum E3 str. Alaska E43 6317366 YP_001920929.1 CDS CLH_1537 NC_010723.1 1646285 1646476 D hypothetical protein 1646285..1646476 Clostridium botulinum E3 str. Alaska E43 6320319 YP_001920930.1 CDS topB NC_010723.1 1646807 1648999 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1646807..1648999 Clostridium botulinum E3 str. Alaska E43 6320306 YP_001920931.1 CDS CLH_1539 NC_010723.1 1649414 1650481 D identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714; N- phage replisome organizer 1649414..1650481 Clostridium botulinum E3 str. Alaska E43 6319061 YP_001920932.1 CDS CLH_1540 NC_010723.1 1650637 1651017 D identified by match to protein family HMM PF00903; glyoxalase I 1650637..1651017 Clostridium botulinum E3 str. Alaska E43 6317400 YP_001920933.1 CDS CLH_1541 NC_010723.1 1651260 1652333 D identified by match to protein family HMM PF02698; integral membrane protein 1651260..1652333 Clostridium botulinum E3 str. Alaska E43 6319893 YP_001920934.1 CDS mutT NC_010723.1 1652450 1652833 D identified by match to protein family HMM PF00293; MutT/nudix family protein 1652450..1652833 Clostridium botulinum E3 str. Alaska E43 6318007 YP_001920935.1 CDS CLH_1543 NC_010723.1 1653194 1654576 D identified by match to protein family HMM PF01547; sugar ABC transporter 1653194..1654576 Clostridium botulinum E3 str. Alaska E43 6319862 YP_001920936.1 CDS CLH_1544 NC_010723.1 1654643 1655539 D identified by match to protein family HMM PF00528; sugar ABC transporter permease protein 1654643..1655539 Clostridium botulinum E3 str. Alaska E43 6319841 YP_001920937.1 CDS CLH_1545 NC_010723.1 1655566 1656393 D identified by match to protein family HMM PF00528; sugar ABC transporter 1655566..1656393 Clostridium botulinum E3 str. Alaska E43 6317827 YP_001920938.1 CDS CLH_1546 NC_010723.1 1656407 1657495 D identified by match to protein family HMM PF04041; hypothetical protein 1656407..1657495 Clostridium botulinum E3 str. Alaska E43 6319626 YP_001920939.1 CDS CLH_1547 NC_010723.1 1657564 1658625 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator 1657564..1658625 Clostridium botulinum E3 str. Alaska E43 6319148 YP_001920940.1 CDS CLH_1548 NC_010723.1 1658639 1659556 D hypothetical protein 1658639..1659556 Clostridium botulinum E3 str. Alaska E43 6317771 YP_001920941.1 CDS CLH_1549 NC_010723.1 1659571 1661172 D identified by match to protein family HMM PF00128; trehalose-6-phosphate hydrolase 1659571..1661172 Clostridium botulinum E3 str. Alaska E43 6318880 YP_001920942.1 CDS manA NC_010723.1 1661350 1662285 D identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1661350..1662285 Clostridium botulinum E3 str. Alaska E43 6319433 YP_001920943.1 CDS CLH_1551 NC_010723.1 1662296 1662937 D identified by match to protein family HMM PF00480; glucokinase 1662296..1662937 Clostridium botulinum E3 str. Alaska E43 6319593 YP_001920944.1 CDS CLH_1552 NC_010723.1 1663042 1664253 D identified by match to protein family HMM PF07690; major facilitator family transporter 1663042..1664253 Clostridium botulinum E3 str. Alaska E43 6318067 YP_001920945.1 CDS CLH_1555 NC_010723.1 1665133 1665897 D identified by match to protein family HMM PF01473; match to protein family HMM PF09394; cell wall binding domain-containing protein 1665133..1665897 Clostridium botulinum E3 str. Alaska E43 6320272 YP_001920946.1 CDS CLH_1558 NC_010723.1 1667280 1667687 D identified by glimmer; putative; hypothetical protein 1667280..1667687 Clostridium botulinum E3 str. Alaska E43 6318629 YP_001920947.1 CDS CLH_1559 NC_010723.1 1667966 1668928 D identified by match to protein family HMM PF08279; DeoR family transcriptional regulator 1667966..1668928 Clostridium botulinum E3 str. Alaska E43 6319147 YP_001920948.1 CDS CLH_1560 NC_010723.1 1669029 1669655 D identified by match to protein family HMM PF01965; intracellular protease, ThiJ/PfpI family 1669029..1669655 Clostridium botulinum E3 str. Alaska E43 6318355 YP_001920949.1 CDS CLH_1561 NC_010723.1 1669796 1670446 D hypothetical protein 1669796..1670446 Clostridium botulinum E3 str. Alaska E43 6320390 YP_001920950.1 CDS CLH_1562 NC_010723.1 1671139 1671591 D identified by match to protein family HMM PF04266; match to protein family HMM PF06171; hypothetical protein 1671139..1671591 Clostridium botulinum E3 str. Alaska E43 6320467 YP_001920951.1 CDS CLH_1563 NC_010723.1 1671938 1673173 R identified by match to protein family HMM PF01071; match to protein family HMM PF02655; hypothetical protein complement(1671938..1673173) Clostridium botulinum E3 str. Alaska E43 6319854 YP_001920952.1 CDS CLH_1564 NC_010723.1 1673163 1674383 R identified by match to protein family HMM PF07690; transporter complement(1673163..1674383) Clostridium botulinum E3 str. Alaska E43 6320542 YP_001920953.1 CDS CLH_1565 NC_010723.1 1674509 1675543 R identified by match to protein family HMM PF00587; match to protein family HMM PF03129; threonyl-tRNA synthetase 1 complement(1674509..1675543) Clostridium botulinum E3 str. Alaska E43 6317584 YP_001920954.1 CDS CLH_1566 NC_010723.1 1676265 1676447 D hypothetical protein 1676265..1676447 Clostridium botulinum E3 str. Alaska E43 6320202 YP_001920955.1 CDS CLH_1567 NC_010723.1 1676668 1677942 D identified by match to protein family HMM PF03572; peptidase, S41 family 1676668..1677942 Clostridium botulinum E3 str. Alaska E43 6317806 YP_001920956.1 CDS CLH_1568 NC_010723.1 1677993 1679249 D putative cytoplasmic protein 1677993..1679249 Clostridium botulinum E3 str. Alaska E43 6317382 YP_001920957.1 CDS CLH_1569 NC_010723.1 1679349 1680536 D identified by match to protein family HMM PF00165; match to protein family HMM PF09370; AraC family transcriptional regulator 1679349..1680536 Clostridium botulinum E3 str. Alaska E43 6318825 YP_001920958.1 CDS CLH_1570 NC_010723.1 1680681 1681889 D identified by match to protein family HMM PF06792; hypothetical protein 1680681..1681889 Clostridium botulinum E3 str. Alaska E43 6319697 YP_001920959.1 CDS CLH_1571 NC_010723.1 1681994 1682815 D identified by match to protein family HMM PF09370; transcriptional regulator 1681994..1682815 Clostridium botulinum E3 str. Alaska E43 6318752 YP_001920960.1 CDS mscL NC_010723.1 1683276 1683704 D identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 1683276..1683704 Clostridium botulinum E3 str. Alaska E43 6319871 YP_001920961.1 CDS hypB NC_010723.1 1684249 1684920 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 1684249..1684920 Clostridium botulinum E3 str. Alaska E43 6320607 YP_001920962.1 CDS CLH_1574 NC_010723.1 1684952 1687642 D identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein 1684952..1687642 Clostridium botulinum E3 str. Alaska E43 6319851 YP_001920963.1 CDS CLH_1575 NC_010723.1 1687751 1688092 D identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein 1687751..1688092 Clostridium botulinum E3 str. Alaska E43 6319228 YP_001920964.1 CDS CLH_1576 NC_010723.1 1688343 1689404 D identified by match to protein family HMM PF01891; cobalamin 1688343..1689404 Clostridium botulinum E3 str. Alaska E43 6319975 YP_001920965.1 CDS cbiQ NC_010723.1 1689426 1690232 D identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 1689426..1690232 Clostridium botulinum E3 str. Alaska E43 6318299 YP_001920966.1 CDS CLH_1578 NC_010723.1 1690233 1690949 D identified by match to protein family HMM PF00005; cobalt import ATP-binding protein CbiO 1690233..1690949 Clostridium botulinum E3 str. Alaska E43 6320451 YP_001920967.1 CDS CLH_1579 NC_010723.1 1691142 1692065 R hypothetical protein complement(1691142..1692065) Clostridium botulinum E3 str. Alaska E43 6319942 YP_001920968.1 CDS CLH_1580 NC_010723.1 1692647 1693114 R identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA complement(1692647..1693114) Clostridium botulinum E3 str. Alaska E43 6320510 YP_001920969.1 CDS CLH_1581 NC_010723.1 1693255 1695072 D identified by match to protein family HMM PF00082; CspA protein 1693255..1695072 Clostridium botulinum E3 str. Alaska E43 6318802 YP_001920970.1 CDS CLH_1582 NC_010723.1 1695092 1696819 D identified by match to protein family HMM PF00082; protein CspC 1695092..1696819 Clostridium botulinum E3 str. Alaska E43 6318056 YP_001920971.1 CDS CLH_1583 NC_010723.1 1697013 1697942 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1697013..1697942 Clostridium botulinum E3 str. Alaska E43 6318513 YP_001920972.1 CDS CLH_1584 NC_010723.1 1698172 1699365 R hypothetical protein complement(1698172..1699365) Clostridium botulinum E3 str. Alaska E43 6319987 YP_001920973.1 CDS CLH_1585 NC_010723.1 1699481 1700362 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR-family transcriptional regulator 1699481..1700362 Clostridium botulinum E3 str. Alaska E43 6318801 YP_001920974.1 CDS CLH_1586 NC_010723.1 1700565 1701296 R identified by match to protein family HMM PF00929; exonuclease complement(1700565..1701296) Clostridium botulinum E3 str. Alaska E43 6320457 YP_001920975.1 CDS CLH_1587 NC_010723.1 1701996 1702931 D hypothetical protein 1701996..1702931 Clostridium botulinum E3 str. Alaska E43 6318169 YP_001920976.1 CDS CLH_1588 NC_010723.1 1703060 1703206 D identified by glimmer; putative; hypothetical protein 1703060..1703206 Clostridium botulinum E3 str. Alaska E43 6319712 YP_001920977.1 CDS CLH_1589 NC_010723.1 1703490 1704080 D identified by glimmer; putative; hypothetical protein 1703490..1704080 Clostridium botulinum E3 str. Alaska E43 6317738 YP_001920978.1 CDS CLH_1590 NC_010723.1 1704613 1706268 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1704613..1706268 Clostridium botulinum E3 str. Alaska E43 6318232 YP_001920979.1 CDS CLH_1591 NC_010723.1 1706539 1707729 D identified by glimmer; putative; hypothetical protein 1706539..1707729 Clostridium botulinum E3 str. Alaska E43 6319502 YP_001920980.1 CDS CLH_1592 NC_010723.1 1707969 1717211 D identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; hypothetical protein 1707969..1717211 Clostridium botulinum E3 str. Alaska E43 6318992 YP_001920981.1 CDS CLH_1593 NC_010723.1 1717454 1718275 R identified by match to protein family HMM PF00037; match to protein family HMM PF00881; nitroreductase family protein fused to ferredoxin domain complement(1717454..1718275) Clostridium botulinum E3 str. Alaska E43 6319623 YP_001920982.1 CDS CLH_1594 NC_010723.1 1718724 1719605 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family 1718724..1719605 Clostridium botulinum E3 str. Alaska E43 6319611 YP_001920983.1 CDS hupS NC_010723.1 1720112 1721053 D identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; [Ni/Fe] hydrogenase, small subunit 1720112..1721053 Clostridium botulinum E3 str. Alaska E43 6317718 YP_001920984.1 CDS hupL NC_010723.1 1721058 1722473 D identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit 1721058..1722473 Clostridium botulinum E3 str. Alaska E43 6319510 YP_001920985.1 CDS CLH_1597 NC_010723.1 1722470 1722943 D identified by match to protein family HMM TIGR00072; hydrogenase maturation protease superfamily 1722470..1722943 Clostridium botulinum E3 str. Alaska E43 6318968 YP_001920986.1 CDS CLH_1598 NC_010723.1 1723059 1723400 D identified by match to protein family HMM PF01155; putative hydrogenase nickel incorporation protein 1723059..1723400 Clostridium botulinum E3 str. Alaska E43 6319390 YP_001920987.1 CDS hypF NC_010723.1 1723415 1725766 D identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 1723415..1725766 Clostridium botulinum E3 str. Alaska E43 6319866 YP_001920988.1 CDS hypC NC_010723.1 1725784 1725999 D identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1725784..1725999 Clostridium botulinum E3 str. Alaska E43 6317383 YP_001920989.1 CDS hypE NC_010723.1 1726164 1727177 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 1726164..1727177 Clostridium botulinum E3 str. Alaska E43 6317365 YP_001920990.1 CDS CLH_1602 NC_010723.1 1727316 1728323 D identified by match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 1727316..1728323 Clostridium botulinum E3 str. Alaska E43 6318076 YP_001920991.1 CDS CLH_1603 NC_010723.1 1728525 1728656 D identified by glimmer; putative; hypothetical protein 1728525..1728656 Clostridium botulinum E3 str. Alaska E43 6319427 YP_001920992.1 CDS CLH_1604 NC_010723.1 1728944 1730884 D identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; periplasmic [Fe] hydrogenase 1 1728944..1730884 Clostridium botulinum E3 str. Alaska E43 6319999 YP_001920993.1 CDS CLH_1607 NC_010723.1 1733111 1734793 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 1733111..1734793 Clostridium botulinum E3 str. Alaska E43 6317295 YP_001920994.1 CDS CLH_1608 NC_010723.1 1735647 1736147 D identified by glimmer; putative; hypothetical protein 1735647..1736147 Clostridium botulinum E3 str. Alaska E43 6320358 YP_001920995.1 CDS CLH_1609 NC_010723.1 1736429 1737751 D identified by match to protein family HMM PF00860; xanthine/uracil permease family protein 1736429..1737751 Clostridium botulinum E3 str. Alaska E43 6318425 YP_001920996.1 CDS CLH_1610 NC_010723.1 1738021 1740084 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1738021..1740084 Clostridium botulinum E3 str. Alaska E43 6317598 YP_001920997.1 CDS CLH_1611 NC_010723.1 1740507 1740728 D hypothetical protein 1740507..1740728 Clostridium botulinum E3 str. Alaska E43 6318571 YP_001920998.1 CDS CLH_1612 NC_010723.1 1740935 1741711 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 1740935..1741711 Clostridium botulinum E3 str. Alaska E43 6319016 YP_001920999.1 CDS CLH_1613 NC_010723.1 1741986 1742918 D identified by match to protein family HMM PF00005; bacitracin transport ATP-binding protein BcrA 1741986..1742918 Clostridium botulinum E3 str. Alaska E43 6319659 YP_001921000.1 CDS CLH_1614 NC_010723.1 1742933 1744618 D putative permease 1742933..1744618 Clostridium botulinum E3 str. Alaska E43 6317321 YP_001921001.1 CDS CLH_1615 NC_010723.1 1744801 1745478 D identified by match to protein family HMM PF00005; lipoprotein-releasing system ATP-binding protein LolD 1744801..1745478 Clostridium botulinum E3 str. Alaska E43 6317606 YP_001921002.1 CDS CLH_1616 NC_010723.1 1745481 1748084 D identified by match to protein family HMM PF02687; putative ABC transporter-associated permease 1745481..1748084 Clostridium botulinum E3 str. Alaska E43 6318082 YP_001921003.1 CDS CLH_1617 NC_010723.1 1748113 1748811 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component response regulator 1748113..1748811 Clostridium botulinum E3 str. Alaska E43 6317500 YP_001921004.1 CDS CLH_1618 NC_010723.1 1748811 1750061 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; two component sensor kinase 1748811..1750061 Clostridium botulinum E3 str. Alaska E43 6319127 YP_001921005.1 CDS CLH_1619 NC_010723.1 1750180 1751052 R identified by match to protein family HMM PF00892; putative integral membrane protein complement(1750180..1751052) Clostridium botulinum E3 str. Alaska E43 6319793 YP_001921006.1 CDS CLH_1620 NC_010723.1 1751262 1751912 D hypothetical protein 1751262..1751912 Clostridium botulinum E3 str. Alaska E43 6319501 YP_001921007.1 CDS CLH_1621 NC_010723.1 1752201 1752575 R identified by match to protein family HMM PF08000; hypothetical protein complement(1752201..1752575) Clostridium botulinum E3 str. Alaska E43 6319217 YP_001921008.1 CDS CLH_1622 NC_010723.1 1752927 1753565 D hypothetical protein 1752927..1753565 Clostridium botulinum E3 str. Alaska E43 6319779 YP_001921009.1 CDS CLH_1623 NC_010723.1 1754629 1755528 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator, LysR family complement(1754629..1755528) Clostridium botulinum E3 str. Alaska E43 6317653 YP_001921010.1 CDS CLH_1624 NC_010723.1 1755702 1756940 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 1755702..1756940 Clostridium botulinum E3 str. Alaska E43 6317769 YP_001921011.1 CDS CLH_1625 NC_010723.1 1757165 1758373 D acetyltransferase 1757165..1758373 Clostridium botulinum E3 str. Alaska E43 6320360 YP_001921012.1 CDS CLH_1626 NC_010723.1 1758700 1759890 D putative rhoptry protein 1758700..1759890 Clostridium botulinum E3 str. Alaska E43 6320611 YP_001921013.1 CDS CLH_1627 NC_010723.1 1760104 1760568 D identified by glimmer; putative; hypothetical protein 1760104..1760568 Clostridium botulinum E3 str. Alaska E43 6318824 YP_001921014.1 CDS CLH_1628 NC_010723.1 1760731 1761690 D hypothetical protein 1760731..1761690 Clostridium botulinum E3 str. Alaska E43 6320424 YP_001921015.1 CDS CLH_1629 NC_010723.1 1761791 1762285 R hypothetical protein complement(1761791..1762285) Clostridium botulinum E3 str. Alaska E43 6318166 YP_001921016.1 CDS CLH_1630 NC_010723.1 1762423 1763157 D identified by match to protein family HMM PF00515; putative TPR repeat-containing protein 1762423..1763157 Clostridium botulinum E3 str. Alaska E43 6319614 YP_001921017.1 CDS hcp NC_010723.1 1763328 1764986 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1763328..1764986 Clostridium botulinum E3 str. Alaska E43 6317908 YP_001921018.1 CDS CLH_1632 NC_010723.1 1765280 1765933 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD-superfamily hydrolase 1765280..1765933 Clostridium botulinum E3 str. Alaska E43 6319714 YP_001921019.1 CDS CLH_1633 NC_010723.1 1766356 1768263 D identified by match to protein family HMM PF00488; DNA mismatch repair protein 1766356..1768263 Clostridium botulinum E3 str. Alaska E43 6318303 YP_001921020.1 CDS CLH_1634 NC_010723.1 1768470 1768898 D identified by match to protein family HMM PF01047; putative transcriptional regulator 1768470..1768898 Clostridium botulinum E3 str. Alaska E43 6320371 YP_001921021.1 CDS CLH_1635 NC_010723.1 1768948 1769973 D hypothetical protein 1768948..1769973 Clostridium botulinum E3 str. Alaska E43 6319221 YP_001921022.1 CDS CLH_1636 NC_010723.1 1770863 1771978 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase 1770863..1771978 Clostridium botulinum E3 str. Alaska E43 6318551 YP_001921023.1 CDS CLH_1637 NC_010723.1 1772575 1774134 D putative xanthine/uracil/vitamin C permease 1772575..1774134 Clostridium botulinum E3 str. Alaska E43 6319430 YP_001921024.1 CDS mch NC_010723.1 1774131 1775093 D catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase 1774131..1775093 Clostridium botulinum E3 str. Alaska E43 6318518 YP_001921025.1 CDS CLH_1639 NC_010723.1 1775156 1775887 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase 1775156..1775887 Clostridium botulinum E3 str. Alaska E43 6319834 YP_001921026.1 CDS CLH_1640 NC_010723.1 1775914 1776870 D identified by glimmer; putative; hypothetical protein 1775914..1776870 Clostridium botulinum E3 str. Alaska E43 6317937 YP_001921027.1 CDS CLH_1641 NC_010723.1 1776951 1778513 D putative permease 1776951..1778513 Clostridium botulinum E3 str. Alaska E43 6317744 YP_001921028.1 CDS CLH_1642 NC_010723.1 1778555 1779694 R identified by match to protein family HMM PF00480; putative transcriptional repressor of the xylose operon complement(1778555..1779694) Clostridium botulinum E3 str. Alaska E43 6318670 YP_001921029.1 CDS CLH_1643 NC_010723.1 1780041 1780598 D identified by match to protein family HMM PF02525; match to protein family HMM PF03358; iron-sulfur flavoprotein 1780041..1780598 Clostridium botulinum E3 str. Alaska E43 6320505 YP_001921030.1 CDS CLH_1644 NC_010723.1 1780660 1782408 R identified by similarity to SP:P29166; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; iron hydrogenase 1 complement(1780660..1782408) Clostridium botulinum E3 str. Alaska E43 6319651 YP_001921031.1 CDS CLH_1645 NC_010723.1 1782402 1784237 R unknown function; putative glutamate synthase (NADPH) small subunit complement(1782402..1784237) Clostridium botulinum E3 str. Alaska E43 6318401 YP_001921032.1 CDS CLH_1646 NC_010723.1 1784556 1784873 D MazG nucleotide pyrophosphohydrolase domain-containing protein 1784556..1784873 Clostridium botulinum E3 str. Alaska E43 6318798 YP_001921033.1 CDS CLH_1647 NC_010723.1 1785046 1786458 D identified by match to protein family HMM PF00324; amino acid permease family protein 1785046..1786458 Clostridium botulinum E3 str. Alaska E43 6319945 YP_001921034.1 CDS CLH_1648 NC_010723.1 1786521 1786883 R identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909; hypothetical protein complement(1786521..1786883) Clostridium botulinum E3 str. Alaska E43 6319019 YP_001921035.1 CDS CLH_1649 NC_010723.1 1787256 1789250 D identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; sensory transduction histidine kinase 1787256..1789250 Clostridium botulinum E3 str. Alaska E43 6320447 YP_001921036.1 CDS CLH_1650 NC_010723.1 1789330 1790877 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; sensory transduction histidine kinase 1789330..1790877 Clostridium botulinum E3 str. Alaska E43 6318736 YP_001921037.1 CDS CLH_1651 NC_010723.1 1790912 1792672 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; two-component sensor histidine kinase 1790912..1792672 Clostridium botulinum E3 str. Alaska E43 6318298 YP_001921038.1 CDS CLH_1652 NC_010723.1 1792844 1793800 D hypothetical protein 1792844..1793800 Clostridium botulinum E3 str. Alaska E43 6319293 YP_001921039.1 CDS CLH_1653 NC_010723.1 1793861 1794439 R hypothetical protein complement(1793861..1794439) Clostridium botulinum E3 str. Alaska E43 6318862 YP_001921040.1 CDS CLH_1654 NC_010723.1 1794671 1795480 D identified by match to protein family HMM PF08238; Sel1 repeat family 1794671..1795480 Clostridium botulinum E3 str. Alaska E43 6319899 YP_001921041.1 CDS CLH_1655 NC_010723.1 1795862 1797418 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; membrane-associated methyl-accepting chemotaxis protein with hamp domain 1795862..1797418 Clostridium botulinum E3 str. Alaska E43 6318126 YP_001921042.1 CDS CLH_1656 NC_010723.1 1797805 1799607 D identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290; oligoendopeptidase F 1797805..1799607 Clostridium botulinum E3 str. Alaska E43 6318645 YP_001921043.1 CDS CLH_1657 NC_010723.1 1799771 1801144 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; V-type sodium ATP synthase subunit J 1799771..1801144 Clostridium botulinum E3 str. Alaska E43 6320422 YP_001921044.1 CDS CLH_1658 NC_010723.1 1801350 1802186 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 1801350..1802186 Clostridium botulinum E3 str. Alaska E43 6318198 YP_001921045.1 CDS CLH_1659 NC_010723.1 1802480 1803691 D identified by match to protein family HMM PF06580; two-component sensor histidine kinase 1802480..1803691 Clostridium botulinum E3 str. Alaska E43 6320066 YP_001921046.1 CDS CLH_1660 NC_010723.1 1803885 1804601 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; transcriptional regulatory protein 1803885..1804601 Clostridium botulinum E3 str. Alaska E43 6319429 YP_001921047.1 CDS CLH_1661 NC_010723.1 1804845 1807256 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 1804845..1807256 Clostridium botulinum E3 str. Alaska E43 6319821 YP_001921048.1 CDS CLH_1662 NC_010723.1 1807320 1808252 D identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein 1807320..1808252 Clostridium botulinum E3 str. Alaska E43 6320209 YP_001921049.1 CDS CLH_1663 NC_010723.1 1808380 1808517 D hypothetical protein 1808380..1808517 Clostridium botulinum E3 str. Alaska E43 6317950 YP_001921050.1 CDS CLH_1664 NC_010723.1 1808837 1810465 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 2',3'-cyclic-nucleotide 2'-phosphodiesterase 1808837..1810465 Clostridium botulinum E3 str. Alaska E43 6318073 YP_001921051.1 CDS CLH_1665 NC_010723.1 1810570 1810695 R identified by glimmer; putative; hypothetical protein complement(1810570..1810695) Clostridium botulinum E3 str. Alaska E43 6318906 YP_001921052.1 CDS CLH_1666 NC_010723.1 1811113 1811673 D identified by match to protein family HMM PF00293; nudix domain protein 1811113..1811673 Clostridium botulinum E3 str. Alaska E43 6317858 YP_001921053.1 CDS CLH_1667 NC_010723.1 1811726 1812178 R identified by match to protein family HMM PF00293; putative MutT/nudix family protein complement(1811726..1812178) Clostridium botulinum E3 str. Alaska E43 6317632 YP_001921054.1 CDS CLH_1668 NC_010723.1 1812416 1813030 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Mn/Fe superoxide dismutase 1812416..1813030 Clostridium botulinum E3 str. Alaska E43 6318300 YP_001921055.1 CDS CLH_1669 NC_010723.1 1813187 1814293 R hypothetical protein complement(1813187..1814293) Clostridium botulinum E3 str. Alaska E43 6319513 YP_001921056.1 CDS CLH_1670 NC_010723.1 1814322 1815227 R hypothetical protein complement(1814322..1815227) Clostridium botulinum E3 str. Alaska E43 6320380 YP_001921057.1 CDS CLH_1671 NC_010723.1 1815534 1817027 R identified by match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase family protein complement(1815534..1817027) Clostridium botulinum E3 str. Alaska E43 6318351 YP_001921058.1 CDS CLH_1672 NC_010723.1 1817356 1817766 D hypothetical protein 1817356..1817766 Clostridium botulinum E3 str. Alaska E43 6318413 YP_001921059.1 CDS CLH_1673 NC_010723.1 1818024 1819955 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein uup 1818024..1819955 Clostridium botulinum E3 str. Alaska E43 6319396 YP_001921060.1 CDS CLH_1674 NC_010723.1 1819969 1820157 D hypothetical protein 1819969..1820157 Clostridium botulinum E3 str. Alaska E43 6317516 YP_001921061.1 CDS CLH_1675 NC_010723.1 1820178 1823438 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455; SWI/SNF family helicase 1820178..1823438 Clostridium botulinum E3 str. Alaska E43 6320393 YP_001921062.1 CDS CLH_1676 NC_010723.1 1823710 1824408 D identified by match to protein family HMM PF02308; MgtC/SapB transporter 1823710..1824408 Clostridium botulinum E3 str. Alaska E43 6317625 YP_001921063.1 CDS CLH_1677 NC_010723.1 1824546 1825274 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 1824546..1825274 Clostridium botulinum E3 str. Alaska E43 6320238 YP_001921064.1 CDS CLH_1678 NC_010723.1 1825420 1826118 D identified by match to protein family HMM PF02308; MgtC/SapB transporter 1825420..1826118 Clostridium botulinum E3 str. Alaska E43 6319046 YP_001921065.1 CDS CLH_1679 NC_010723.1 1826497 1827300 D hypothetical protein 1826497..1827300 Clostridium botulinum E3 str. Alaska E43 6319278 YP_001921066.1 CDS panB NC_010723.1 1827300 1828127 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1827300..1828127 Clostridium botulinum E3 str. Alaska E43 6320392 YP_001921067.1 CDS panC NC_010723.1 1828146 1828988 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1828146..1828988 Clostridium botulinum E3 str. Alaska E43 6319990 YP_001921068.1 CDS panD NC_010723.1 1829134 1829508 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1829134..1829508 Clostridium botulinum E3 str. Alaska E43 6319522 YP_001921069.1 CDS CLH_1683 NC_010723.1 1829909 1830931 D identified by match to protein family HMM PF04055; spore photoproduct lyase 1829909..1830931 Clostridium botulinum E3 str. Alaska E43 6319740 YP_001921070.1 CDS mutS NC_010723.1 1831262 1834087 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1831262..1834087 Clostridium botulinum E3 str. Alaska E43 6317819 YP_001921071.1 CDS CLH_1685 NC_010723.1 1834112 1834279 D identified by glimmer; putative; hypothetical protein 1834112..1834279 Clostridium botulinum E3 str. Alaska E43 6318428 YP_001921072.1 CDS treP NC_010723.1 1834573 1835979 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system trehalose-specific transporter subunit IIBC 1834573..1835979 Clostridium botulinum E3 str. Alaska E43 6317781 YP_001921073.1 CDS treC NC_010723.1 1836014 1837672 D identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 1836014..1837672 Clostridium botulinum E3 str. Alaska E43 6317791 YP_001921074.1 CDS treR NC_010723.1 1837709 1838422 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 1837709..1838422 Clostridium botulinum E3 str. Alaska E43 6319140 YP_001921075.1 CDS mutL NC_010723.1 1838662 1840692 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1838662..1840692 Clostridium botulinum E3 str. Alaska E43 6317617 YP_001921076.1 CDS miaA NC_010723.1 1840696 1841625 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1840696..1841625 Clostridium botulinum E3 str. Alaska E43 6318237 YP_001921077.1 CDS hfq NC_010723.1 1841675 1841908 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1841675..1841908 Clostridium botulinum E3 str. Alaska E43 6319746 YP_001921078.1 CDS CLH_1692 NC_010723.1 1841984 1843273 D identified by match to protein family HMM PF06838; aluminium resistance protein 1841984..1843273 Clostridium botulinum E3 str. Alaska E43 6318042 YP_001921079.1 CDS lexA NC_010723.1 1843445 1844050 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1843445..1844050) Clostridium botulinum E3 str. Alaska E43 6319480 YP_001921080.1 CDS CLH_1694 NC_010723.1 1844226 1844657 D hypothetical protein 1844226..1844657 Clostridium botulinum E3 str. Alaska E43 6319879 YP_001921081.1 CDS CLH_1695 NC_010723.1 1844727 1845218 D putative lipoprotein 1844727..1845218 Clostridium botulinum E3 str. Alaska E43 6319993 YP_001921082.1 CDS CLH_1696 NC_010723.1 1845401 1845931 D putative lipoprotein 1845401..1845931 Clostridium botulinum E3 str. Alaska E43 6317502 YP_001921083.1 CDS xerC NC_010723.1 1846045 1847034 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1846045..1847034) Clostridium botulinum E3 str. Alaska E43 6317636 YP_001921084.1 CDS ybaK NC_010723.1 1847705 1848184 D identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein 1847705..1848184 Clostridium botulinum E3 str. Alaska E43 6318623 YP_001921085.1 CDS miaB NC_010723.1 1848507 1849877 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1848507..1849877) Clostridium botulinum E3 str. Alaska E43 6317630 YP_001921086.1 CDS CLH_1700 NC_010723.1 1850114 1850326 R identified by match to protein family HMM PF01381; putative transcriptional regulator complement(1850114..1850326) Clostridium botulinum E3 str. Alaska E43 6318318 YP_001921087.1 CDS CLH_1701 NC_010723.1 1850836 1851624 R identified by match to protein family HMM PF00959; match to protein family HMM PF01473; putative phage lysozyme complement(1850836..1851624) Clostridium botulinum E3 str. Alaska E43 6319884 YP_001921088.1 CDS CLH_1702 NC_010723.1 1851682 1851855 R hypothetical protein complement(1851682..1851855) Clostridium botulinum E3 str. Alaska E43 6318450 YP_001921089.1 CDS CLH_1703 NC_010723.1 1851868 1852068 R UviB-like protein complement(1851868..1852068) Clostridium botulinum E3 str. Alaska E43 6319954 YP_001921090.1 CDS CLH_1704 NC_010723.1 1852141 1853145 R identified by match to protein family HMM PF02368; putative phage surface protein complement(1852141..1853145) Clostridium botulinum E3 str. Alaska E43 6318608 YP_001921091.1 CDS CLH_1705 NC_010723.1 1853192 1854715 R identified by match to protein family HMM PF01345; match to protein family HMM PF02368; match to protein family HMM TIGR01451; hypothetical protein complement(1853192..1854715) Clostridium botulinum E3 str. Alaska E43 6318466 YP_001921092.1 CDS CLH_1706 NC_010723.1 1855188 1855385 R hypothetical protein complement(1855188..1855385) Clostridium botulinum E3 str. Alaska E43 6317414 YP_001921093.1 CDS CLH_1707 NC_010723.1 1855398 1855736 R identified by glimmer; putative; hypothetical protein complement(1855398..1855736) Clostridium botulinum E3 str. Alaska E43 6317773 YP_001921094.1 CDS CLH_1708 NC_010723.1 1855752 1857161 R putative phage tail fiber protein complement(1855752..1857161) Clostridium botulinum E3 str. Alaska E43 6318847 YP_001921095.1 CDS CLH_1709 NC_010723.1 1857161 1857823 R identified by match to protein family HMM PF09684; phage tail protein complement(1857161..1857823) Clostridium botulinum E3 str. Alaska E43 6318400 YP_001921096.1 CDS CLH_1710 NC_010723.1 1857823 1858974 R identified by match to protein family HMM PF04865; hypothetical protein complement(1857823..1858974) Clostridium botulinum E3 str. Alaska E43 6319415 YP_001921097.1 CDS CLH_1711 NC_010723.1 1858967 1859287 R putative GPW/gp25 family protein complement(1858967..1859287) Clostridium botulinum E3 str. Alaska E43 6320106 YP_001921098.1 CDS CLH_1712 NC_010723.1 1859290 1859832 R hypothetical protein complement(1859290..1859832) Clostridium botulinum E3 str. Alaska E43 6319269 YP_001921099.1 CDS CLH_1713 NC_010723.1 1859837 1860037 R putative phage baseplate assembly protein V complement(1859837..1860037) Clostridium botulinum E3 str. Alaska E43 6319615 YP_001921100.1 CDS CLH_1714 NC_010723.1 1860037 1860945 R hypothetical protein complement(1860037..1860945) Clostridium botulinum E3 str. Alaska E43 6318016 YP_001921101.1 CDS CLH_1715 NC_010723.1 1860961 1861173 R hypothetical protein complement(1860961..1861173) Clostridium botulinum E3 str. Alaska E43 6317683 YP_001921102.1 CDS CLH_1716 NC_010723.1 1861166 1863364 R TMP repeat family complement(1861166..1863364) Clostridium botulinum E3 str. Alaska E43 6320488 YP_001921103.1 CDS CLH_1717 NC_010723.1 1863530 1863853 R identified by glimmer; putative; hypothetical protein complement(1863530..1863853) Clostridium botulinum E3 str. Alaska E43 6317340 YP_001921104.1 CDS CLH_1718 NC_010723.1 1863923 1864444 R putative phage major tail tube protein complement(1863923..1864444) Clostridium botulinum E3 str. Alaska E43 6320110 YP_001921105.1 CDS CLH_1719 NC_010723.1 1864444 1865880 R hypothetical protein complement(1864444..1865880) Clostridium botulinum E3 str. Alaska E43 6318112 YP_001921106.1 CDS CLH_1720 NC_010723.1 1865893 1866417 R hypothetical protein complement(1865893..1866417) Clostridium botulinum E3 str. Alaska E43 6319750 YP_001921107.1 CDS CLH_1721 NC_010723.1 1866427 1866999 R hypothetical protein complement(1866427..1866999) Clostridium botulinum E3 str. Alaska E43 6319379 YP_001921108.1 CDS CLH_1722 NC_010723.1 1866999 1867310 R hypothetical protein complement(1866999..1867310) Clostridium botulinum E3 str. Alaska E43 6319618 YP_001921109.1 CDS CLH_1723 NC_010723.1 1867300 1867527 R identified by glimmer; putative; hypothetical protein complement(1867300..1867527) Clostridium botulinum E3 str. Alaska E43 6320379 YP_001921110.1 CDS CLH_1724 NC_010723.1 1867558 1868604 R hypothetical protein complement(1867558..1868604) Clostridium botulinum E3 str. Alaska E43 6319375 YP_001921111.1 CDS CLH_1725 NC_010723.1 1868620 1868967 R identified by glimmer; putative; hypothetical protein complement(1868620..1868967) Clostridium botulinum E3 str. Alaska E43 6320588 YP_001921112.1 CDS CLH_1726 NC_010723.1 1868967 1870100 R identified by match to protein family HMM PF00574; peptidase S14, ClpP complement(1868967..1870100) Clostridium botulinum E3 str. Alaska E43 6318684 YP_001921113.1 CDS CLH_1727 NC_010723.1 1870180 1871739 R identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein, lambda family complement(1870180..1871739) Clostridium botulinum E3 str. Alaska E43 6320143 YP_001921114.1 CDS CLH_1728 NC_010723.1 1871750 1871983 R hypothetical protein complement(1871750..1871983) Clostridium botulinum E3 str. Alaska E43 6318958 YP_001921115.1 CDS CLH_1729 NC_010723.1 1871999 1873111 R phage terminase GpA complement(1871999..1873111) Clostridium botulinum E3 str. Alaska E43 6317854 YP_001921116.1 CDS CLH_1730 NC_010723.1 1873313 1873819 R phage terminase GpA complement(1873313..1873819) Clostridium botulinum E3 str. Alaska E43 6317811 YP_001921117.1 CDS CLH_1731 NC_010723.1 1873797 1874390 R hypothetical protein complement(1873797..1874390) Clostridium botulinum E3 str. Alaska E43 6320448 YP_001921118.1 CDS CLH_1732 NC_010723.1 1874657 1875013 R identified by glimmer; putative; hypothetical protein complement(1874657..1875013) Clostridium botulinum E3 str. Alaska E43 6318607 YP_001921119.1 CDS CLH_1733 NC_010723.1 1875198 1875782 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(1875198..1875782) Clostridium botulinum E3 str. Alaska E43 6318331 YP_001921120.1 CDS CLH_1734 NC_010723.1 1875779 1876006 R hypothetical protein complement(1875779..1876006) Clostridium botulinum E3 str. Alaska E43 6320442 YP_001921121.1 CDS CLH_1735 NC_010723.1 1876061 1876432 R gp2 complement(1876061..1876432) Clostridium botulinum E3 str. Alaska E43 6319035 YP_001921122.1 CDS CLH_1736 NC_010723.1 1876560 1876685 R identified by glimmer; putative; hypothetical protein complement(1876560..1876685) Clostridium botulinum E3 str. Alaska E43 6320367 YP_001921123.1 CDS CLH_1737 NC_010723.1 1876755 1876904 R hypothetical protein complement(1876755..1876904) Clostridium botulinum E3 str. Alaska E43 6317892 YP_001921124.1 CDS CLH_1738 NC_010723.1 1877144 1878337 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 2 complement(1877144..1878337) Clostridium botulinum E3 str. Alaska E43 6319482 YP_001921125.1 CDS CLH_1739 NC_010723.1 1878561 1878950 R hypothetical protein complement(1878561..1878950) Clostridium botulinum E3 str. Alaska E43 6320289 YP_001921126.1 CDS CLH_1740 NC_010723.1 1879101 1879292 R identified by glimmer; putative; hypothetical protein complement(1879101..1879292) Clostridium botulinum E3 str. Alaska E43 6318853 YP_001921127.1 CDS CLH_1741 NC_010723.1 1879561 1880067 R identified by glimmer; putative; hypothetical protein complement(1879561..1880067) Clostridium botulinum E3 str. Alaska E43 6320107 YP_001921128.1 CDS CLH_1742 NC_010723.1 1880388 1880636 R identified by match to protein family HMM PF07875; spore coat protein CotF complement(1880388..1880636) Clostridium botulinum E3 str. Alaska E43 6318295 YP_001921129.1 CDS CLH_1743 NC_010723.1 1880649 1880834 R hypothetical protein complement(1880649..1880834) Clostridium botulinum E3 str. Alaska E43 6320054 YP_001921130.1 CDS CLH_1746 NC_010723.1 1882218 1882403 R identified by glimmer; putative; hypothetical protein complement(1882218..1882403) Clostridium botulinum E3 str. Alaska E43 6318885 YP_001921131.1 CDS CLH_1747 NC_010723.1 1882423 1882635 R identified by glimmer; putative; hypothetical protein complement(1882423..1882635) Clostridium botulinum E3 str. Alaska E43 6317407 YP_001921132.1 CDS CLH_1748 NC_010723.1 1882754 1883020 R hypothetical protein complement(1882754..1883020) Clostridium botulinum E3 str. Alaska E43 6317256 YP_001921133.1 CDS CLH_1749 NC_010723.1 1883218 1883544 D identified by glimmer; putative; hypothetical protein 1883218..1883544 Clostridium botulinum E3 str. Alaska E43 6319721 YP_001921134.1 CDS CLH_1750 NC_010723.1 1883914 1884069 R identified by glimmer; putative; hypothetical protein complement(1883914..1884069) Clostridium botulinum E3 str. Alaska E43 6318762 YP_001921135.1 CDS CLH_1751 NC_010723.1 1884066 1884233 R identified by glimmer; putative; hypothetical protein complement(1884066..1884233) Clostridium botulinum E3 str. Alaska E43 6320097 YP_001921136.1 CDS CLH_1752 NC_010723.1 1884235 1885176 R phage protein complement(1884235..1885176) Clostridium botulinum E3 str. Alaska E43 6317471 YP_001921137.1 CDS CLH_1753 NC_010723.1 1885289 1886437 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB protein complement(1885289..1886437) Clostridium botulinum E3 str. Alaska E43 6319580 YP_001921138.1 CDS CLH_1754 NC_010723.1 1886422 1887177 R identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj complement(1886422..1887177) Clostridium botulinum E3 str. Alaska E43 6317507 YP_001921139.1 CDS CLH_1755 NC_010723.1 1887390 1887563 R 50S ribosomal protein L5 complement(1887390..1887563) Clostridium botulinum E3 str. Alaska E43 6317821 YP_001921140.1 CDS CLH_1756 NC_010723.1 1887592 1888068 R hypothetical protein complement(1887592..1888068) Clostridium botulinum E3 str. Alaska E43 6318887 YP_001921141.1 CDS CLH_1757 NC_010723.1 1888190 1888381 R identified by match to protein family HMM PF01381; hypothetical protein complement(1888190..1888381) Clostridium botulinum E3 str. Alaska E43 6320149 YP_001921142.1 CDS CLH_1758 NC_010723.1 1888558 1888962 D identified by match to protein family HMM PF01381; transcriptional regulator 1888558..1888962 Clostridium botulinum E3 str. Alaska E43 6318026 YP_001921143.1 CDS CLH_1759 NC_010723.1 1889089 1889634 D identified by glimmer; putative; hypothetical protein 1889089..1889634 Clostridium botulinum E3 str. Alaska E43 6318257 YP_001921144.1 CDS CLH_1760 NC_010723.1 1889748 1889921 D identified by glimmer; putative; hypothetical protein 1889748..1889921 Clostridium botulinum E3 str. Alaska E43 6319728 YP_001921145.1 CDS CLH_1761 NC_010723.1 1890140 1892179 R hypothetical protein complement(1890140..1892179) Clostridium botulinum E3 str. Alaska E43 6319356 YP_001921146.1 CDS CLH_1762 NC_010723.1 1892299 1893660 D putative modification methylase 1892299..1893660 Clostridium botulinum E3 str. Alaska E43 6320573 YP_001921147.1 CDS CLH_1763 NC_010723.1 1893711 1895402 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; putative resolvase 1893711..1895402 Clostridium botulinum E3 str. Alaska E43 6317579 YP_001921148.1 CDS CLH_1764 NC_010723.1 1895452 1895583 R identified by glimmer; putative; hypothetical protein complement(1895452..1895583) Clostridium botulinum E3 str. Alaska E43 6318483 YP_001921149.1 CDS CLH_1765 NC_010723.1 1895997 1896278 R identified by glimmer; putative; hypothetical protein complement(1895997..1896278) Clostridium botulinum E3 str. Alaska E43 6319497 YP_001921150.1 CDS CLH_1766 NC_010723.1 1896306 1897166 R identified by match to protein family HMM PF00583; acetyltransferase complement(1896306..1897166) Clostridium botulinum E3 str. Alaska E43 6318270 YP_001921151.1 CDS CLH_1767 NC_010723.1 1897317 1899224 R these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1897317..1899224) Clostridium botulinum E3 str. Alaska E43 6320208 YP_001921152.1 CDS cmk NC_010723.1 1899253 1899906 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1899253..1899906) Clostridium botulinum E3 str. Alaska E43 6319438 YP_001921153.1 CDS CLH_1769 NC_010723.1 1900004 1901224 R identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein complement(1900004..1901224) Clostridium botulinum E3 str. Alaska E43 6317289 YP_001921154.1 CDS CLH_1770 NC_010723.1 1901367 1901594 R identified by match to protein family HMM PF07866; hypothetical protein complement(1901367..1901594) Clostridium botulinum E3 str. Alaska E43 6317829 YP_001921155.1 CDS CLH_1771 NC_010723.1 1901654 1902301 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(1901654..1902301) Clostridium botulinum E3 str. Alaska E43 6317682 YP_001921156.1 CDS cytX NC_010723.1 1902466 1903668 R identified by match to protein family HMM PF02133; match to protein family HMM TIGR02358; hydroxymethylpyrimidine transporter CytX complement(1902466..1903668) Clostridium botulinum E3 str. Alaska E43 6317669 YP_001921157.1 CDS CLH_1773 NC_010723.1 1904011 1905042 R identified by glimmer; putative; hypothetical protein complement(1904011..1905042) Clostridium botulinum E3 str. Alaska E43 6319570 YP_001921158.1 CDS CLH_1774 NC_010723.1 1905064 1905243 R identified by glimmer; putative; hypothetical protein complement(1905064..1905243) Clostridium botulinum E3 str. Alaska E43 6317913 YP_001921159.1 CDS CLH_1775 NC_010723.1 1905388 1906584 R identified by glimmer; putative; hypothetical protein complement(1905388..1906584) Clostridium botulinum E3 str. Alaska E43 6319487 YP_001921160.1 CDS CLH_1778 NC_010723.1 1907623 1909521 R identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02954; signal-transduction and transcriptional-control protein complement(1907623..1909521) Clostridium botulinum E3 str. Alaska E43 6319985 YP_001921161.1 CDS CLH_1779 NC_010723.1 1909978 1910181 R hypothetical protein complement(1909978..1910181) Clostridium botulinum E3 str. Alaska E43 6318283 YP_001921162.1 CDS CLH_1780 NC_010723.1 1910503 1911108 R identified by match to protein family HMM PF00293; nudix-family protein complement(1910503..1911108) Clostridium botulinum E3 str. Alaska E43 6317924 YP_001921163.1 CDS CLH_1781 NC_010723.1 1911350 1911841 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(1911350..1911841) Clostridium botulinum E3 str. Alaska E43 6318883 YP_001921164.1 CDS CLH_1782 NC_010723.1 1911928 1912701 R identified by match to protein family HMM PF02811; putative PHP domain complement(1911928..1912701) Clostridium botulinum E3 str. Alaska E43 6318912 YP_001921165.1 CDS CLH_1783 NC_010723.1 1912874 1913398 D identified by glimmer; putative; hypothetical protein 1912874..1913398 Clostridium botulinum E3 str. Alaska E43 6317743 YP_001921166.1 CDS CLH_1784 NC_010723.1 1913465 1914106 R identified by match to protein family HMM PF06571; hypothetical protein complement(1913465..1914106) Clostridium botulinum E3 str. Alaska E43 6319362 YP_001921167.1 CDS CLH_1785 NC_010723.1 1914522 1915178 D putative lipoprotein 1914522..1915178 Clostridium botulinum E3 str. Alaska E43 6317381 YP_001921168.1 CDS CLH_1786 NC_010723.1 1915411 1916553 R FliB family protein complement(1915411..1916553) Clostridium botulinum E3 str. Alaska E43 6319126 YP_001921169.1 CDS CLH_1787 NC_010723.1 1916766 1917077 R identified by glimmer; putative; hypothetical protein complement(1916766..1917077) Clostridium botulinum E3 str. Alaska E43 6319249 YP_001921170.1 CDS CLH_1788 NC_010723.1 1917313 1917939 R hypothetical protein complement(1917313..1917939) Clostridium botulinum E3 str. Alaska E43 6317251 YP_001921171.1 CDS CLH_1789 NC_010723.1 1917943 1918794 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1917943..1918794) Clostridium botulinum E3 str. Alaska E43 6319401 YP_001921172.1 CDS CLH_1790 NC_010723.1 1918800 1919174 R identified by match to protein family HMM PF00392; GntR-family transcriptional regulator complement(1918800..1919174) Clostridium botulinum E3 str. Alaska E43 6320181 YP_001921173.1 CDS CLH_1791 NC_010723.1 1919371 1919628 R hypothetical protein complement(1919371..1919628) Clostridium botulinum E3 str. Alaska E43 6318732 YP_001921174.1 CDS CLH_1792 NC_010723.1 1919845 1920324 R identified by match to protein family HMM PF01325; putative iron-dependent repressor complement(1919845..1920324) Clostridium botulinum E3 str. Alaska E43 6318989 YP_001921175.1 CDS CLH_1793 NC_010723.1 1920478 1920729 D identified by match to protein family HMM PF04023; hypothetical protein 1920478..1920729 Clostridium botulinum E3 str. Alaska E43 6319964 YP_001921176.1 CDS CLH_1794 NC_010723.1 1920804 1922954 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; ferrous iron transport protein B 1920804..1922954 Clostridium botulinum E3 str. Alaska E43 6320568 YP_001921177.1 CDS CLH_1795 NC_010723.1 1923480 1925177 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1923480..1925177 Clostridium botulinum E3 str. Alaska E43 6317575 YP_001921178.1 CDS CLH_1796 NC_010723.1 1925242 1926060 R hypothetical protein complement(1925242..1926060) Clostridium botulinum E3 str. Alaska E43 6317660 YP_001921179.1 CDS CLH_1797 NC_010723.1 1926163 1927569 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; two-component sensor histidine kinase complement(1926163..1927569) Clostridium botulinum E3 str. Alaska E43 6319145 YP_001921180.1 CDS CLH_1798 NC_010723.1 1927571 1928284 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; regulatory protein VanR complement(1927571..1928284) Clostridium botulinum E3 str. Alaska E43 6319436 YP_001921181.1 CDS CLH_1799 NC_010723.1 1928380 1929153 R ABC transporter permease complement(1928380..1929153) Clostridium botulinum E3 str. Alaska E43 6320445 YP_001921182.1 CDS CLH_1800 NC_010723.1 1929159 1930046 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1929159..1930046) Clostridium botulinum E3 str. Alaska E43 6319786 YP_001921183.1 CDS CLH_1801 NC_010723.1 1930062 1931087 R hypothetical protein complement(1930062..1931087) Clostridium botulinum E3 str. Alaska E43 6319262 YP_001921184.1 CDS CLH_1802 NC_010723.1 1931369 1931983 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase (Mn) complement(1931369..1931983) Clostridium botulinum E3 str. Alaska E43 6319541 YP_001921185.1 CDS CLH_1803 NC_010723.1 1932233 1932784 R identified by glimmer; putative; hypothetical protein complement(1932233..1932784) Clostridium botulinum E3 str. Alaska E43 6319022 YP_001921186.1 CDS CLH_1804 NC_010723.1 1933421 1933540 R identified by glimmer; putative; hypothetical protein complement(1933421..1933540) Clostridium botulinum E3 str. Alaska E43 6319423 YP_001921187.1 CDS trpB NC_010723.1 1933753 1934970 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1933753..1934970) Clostridium botulinum E3 str. Alaska E43 6319233 YP_001921188.1 CDS lexA NC_010723.1 1935051 1936592 R identified by match to protein family HMM PF00580; LexA repressor complement(1935051..1936592) Clostridium botulinum E3 str. Alaska E43 6318792 YP_001921189.1 CDS phnA NC_010723.1 1936833 1937171 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA complement(1936833..1937171) Clostridium botulinum E3 str. Alaska E43 6320002 YP_001921190.1 CDS CLH_1808 NC_010723.1 1937477 1938160 R identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein complement(1937477..1938160) Clostridium botulinum E3 str. Alaska E43 6319844 YP_001921191.1 CDS CLH_1809 NC_010723.1 1938438 1938968 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 1938438..1938968 Clostridium botulinum E3 str. Alaska E43 6320265 YP_001921192.1 CDS CLH_1810 NC_010723.1 1939116 1940816 R identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein complement(1939116..1940816) Clostridium botulinum E3 str. Alaska E43 6317300 YP_001921193.1 CDS CLH_1811 NC_010723.1 1940901 1941221 R identified by match to protein family HMM PF00581; rhodanesen domain-containing protein complement(1940901..1941221) Clostridium botulinum E3 str. Alaska E43 6318781 YP_001921194.1 CDS CLH_1812 NC_010723.1 1941587 1942174 R identified by glimmer; putative; hypothetical protein complement(1941587..1942174) Clostridium botulinum E3 str. Alaska E43 6319015 YP_001921195.1 CDS CLH_1813 NC_010723.1 1942614 1943030 R identified by match to protein family HMM PF01047; match to protein family HMM PF03965; transcriptional regulator complement(1942614..1943030) Clostridium botulinum E3 str. Alaska E43 6319805 YP_001921196.1 CDS CLH_1814 NC_010723.1 1943382 1944521 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-coa dehydrogenase, short-chain specific complement(1943382..1944521) Clostridium botulinum E3 str. Alaska E43 6318491 YP_001921197.1 CDS CLH_1815 NC_010723.1 1944701 1946254 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(1944701..1946254) Clostridium botulinum E3 str. Alaska E43 6319327 YP_001921198.1 CDS CLH_1816 NC_010723.1 1946325 1947101 R identified by match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase complement(1946325..1947101) Clostridium botulinum E3 str. Alaska E43 6319590 YP_001921199.1 CDS CLH_1817 NC_010723.1 1947496 1948323 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1947496..1948323) Clostridium botulinum E3 str. Alaska E43 6319268 YP_001921200.1 CDS CLH_1818 NC_010723.1 1948747 1949256 R rubrerythrin family protein complement(1948747..1949256) Clostridium botulinum E3 str. Alaska E43 6320290 YP_001921201.1 CDS CLH_1819 NC_010723.1 1949448 1950008 R identified by match to protein family HMM PF00132; O-acetyltransferase family protein complement(1949448..1950008) Clostridium botulinum E3 str. Alaska E43 6320095 YP_001921202.1 CDS CLH_1820 NC_010723.1 1950176 1951051 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883; AraC family transcriptional regulator 1950176..1951051 Clostridium botulinum E3 str. Alaska E43 6318448 YP_001921203.1 CDS CLH_1821 NC_010723.1 1951131 1951340 R hypothetical protein complement(1951131..1951340) Clostridium botulinum E3 str. Alaska E43 6320030 YP_001921204.1 CDS CLH_1822 NC_010723.1 1952091 1952339 D hypothetical protein 1952091..1952339 Clostridium botulinum E3 str. Alaska E43 6320499 YP_001921205.1 CDS thiH NC_010723.1 1952406 1953824 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1952406..1953824 Clostridium botulinum E3 str. Alaska E43 6319084 YP_001921206.1 CDS CLH_1824 NC_010723.1 1954533 1954715 R identified by glimmer; putative; hypothetical protein complement(1954533..1954715) Clostridium botulinum E3 str. Alaska E43 6319825 YP_001921207.1 CDS CLH_1825 NC_010723.1 1955250 1956818 D identified by match to protein family HMM PF00496; heme-binding protein A 1955250..1956818 Clostridium botulinum E3 str. Alaska E43 6319537 YP_001921208.1 CDS CLH_1826 NC_010723.1 1956895 1957899 D identified by match to protein family HMM PF00528; dipeptide transport system permease DppB 1956895..1957899 Clostridium botulinum E3 str. Alaska E43 6320335 YP_001921209.1 CDS CLH_1827 NC_010723.1 1957921 1958829 D identified by match to protein family HMM PF00528; glutathione transport system permease protein GsiD 1957921..1958829 Clostridium botulinum E3 str. Alaska E43 6317243 YP_001921210.1 CDS CLH_1828 NC_010723.1 1958845 1959819 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppD 1958845..1959819 Clostridium botulinum E3 str. Alaska E43 6320025 YP_001921211.1 CDS CLH_1829 NC_010723.1 1959820 1960797 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppF 1959820..1960797 Clostridium botulinum E3 str. Alaska E43 6317550 YP_001921212.1 CDS CLH_1830 NC_010723.1 1960999 1961361 D identified by match to protein family HMM PF03733; hypothetical protein 1960999..1961361 Clostridium botulinum E3 str. Alaska E43 6319082 YP_001921213.1 CDS CLH_1831 NC_010723.1 1961413 1962066 R identified by match to protein family HMM PF01712; deoxyguanosIne kinase complement(1961413..1962066) Clostridium botulinum E3 str. Alaska E43 6317523 YP_001921214.1 CDS CLH_1832 NC_010723.1 1962226 1962987 R identified by match to protein family HMM PF02698; GdmH complement(1962226..1962987) Clostridium botulinum E3 str. Alaska E43 6320206 YP_001921215.1 CDS CLH_1833 NC_010723.1 1963254 1963766 R hypothetical protein complement(1963254..1963766) Clostridium botulinum E3 str. Alaska E43 6318399 YP_001921216.1 CDS CLH_1835 NC_010723.1 1964271 1964705 R identified by glimmer; putative; hypothetical protein complement(1964271..1964705) Clostridium botulinum E3 str. Alaska E43 6318999 YP_001921217.1 CDS CLH_1836 NC_010723.1 1964976 1966283 R identified by match to protein family HMM PF03553; Na+/H+ antiporter complement(1964976..1966283) Clostridium botulinum E3 str. Alaska E43 6318940 YP_001921218.1 CDS CLH_1837 NC_010723.1 1967106 1969328 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(1967106..1969328) Clostridium botulinum E3 str. Alaska E43 6319484 YP_001921219.1 CDS CLH_1838 NC_010723.1 1969312 1970019 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; regulatory protein VanR complement(1969312..1970019) Clostridium botulinum E3 str. Alaska E43 6318107 YP_001921220.1 CDS CLH_1839 NC_010723.1 1970405 1970677 R hypothetical protein complement(1970405..1970677) Clostridium botulinum E3 str. Alaska E43 6318922 YP_001921221.1 CDS CLH_1840 NC_010723.1 1970767 1971168 R hypothetical protein complement(1970767..1971168) Clostridium botulinum E3 str. Alaska E43 6320058 YP_001921222.1 CDS CLH_1841 NC_010723.1 1971339 1971494 D hypothetical protein 1971339..1971494 Clostridium botulinum E3 str. Alaska E43 6317706 YP_001921223.1 CDS CLH_1842 NC_010723.1 1971694 1972218 R hypothetical protein complement(1971694..1972218) Clostridium botulinum E3 str. Alaska E43 6317465 YP_001921224.1 CDS CLH_1843 NC_010723.1 1972357 1973556 D identified by match to protein family HMM PF02272; match to protein family HMM PF07973; dhha1 domain protein 1972357..1973556 Clostridium botulinum E3 str. Alaska E43 6319971 YP_001921225.1 CDS CLH_1844 NC_010723.1 1973753 1974301 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutM complement(1973753..1974301) Clostridium botulinum E3 str. Alaska E43 6319944 YP_001921226.1 CDS CLH_1845 NC_010723.1 1974326 1975651 R identified by match to protein family HMM PF01512; ethanolamine utilization Fe-S center protein complement(1974326..1975651) Clostridium botulinum E3 str. Alaska E43 6319277 YP_001921227.1 CDS CLH_1846 NC_010723.1 1975669 1977162 R identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE complement(1975669..1977162) Clostridium botulinum E3 str. Alaska E43 6317410 YP_001921228.1 CDS CLH_1847 NC_010723.1 1977181 1977453 R identified by match to protein family HMM PF03319; ethanolamine utilization protein EutN complement(1977181..1977453) Clostridium botulinum E3 str. Alaska E43 6318100 YP_001921229.1 CDS CLH_1848 NC_010723.1 1977463 1978311 R putative phosphopantothenate--cysteine ligase complement(1977463..1978311) Clostridium botulinum E3 str. Alaska E43 6317539 YP_001921230.1 CDS CLH_1849 NC_010723.1 1978322 1979143 R identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ complement(1978322..1979143) Clostridium botulinum E3 str. Alaska E43 6320554 YP_001921231.1 CDS CLH_1850 NC_010723.1 1979146 1979802 R identified by match to protein family HMM PF06130; propanediol utilization protein complement(1979146..1979802) Clostridium botulinum E3 str. Alaska E43 6319600 YP_001921232.1 CDS CLH_1851 NC_010723.1 1979828 1980106 R identified by match to protein family HMM PF00936; propanediol utilization protein PduA complement(1979828..1980106) Clostridium botulinum E3 str. Alaska E43 6320518 YP_001921233.1 CDS CLH_1852 NC_010723.1 1980211 1980489 R identified by match to protein family HMM PF00936; propanediol utilization protein PduA complement(1980211..1980489) Clostridium botulinum E3 str. Alaska E43 6319045 YP_001921234.1 CDS CLH_1853 NC_010723.1 1980505 1981005 R identified by match to protein family HMM PF00936; putative propanediol utilization protein complement(1980505..1981005) Clostridium botulinum E3 str. Alaska E43 6320396 YP_001921235.1 CDS CLH_1854 NC_010723.1 1981069 1981893 R identified by match to protein family HMM PF00936; propanediol utilization protein PduB complement(1981069..1981893) Clostridium botulinum E3 str. Alaska E43 6318503 YP_001921236.1 CDS CLH_1855 NC_010723.1 1982245 1983408 R identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(1982245..1983408) Clostridium botulinum E3 str. Alaska E43 6320039 YP_001921237.1 CDS CLH_1856 NC_010723.1 1983952 1984257 R hypothetical protein complement(1983952..1984257) Clostridium botulinum E3 str. Alaska E43 6317330 YP_001921238.1 CDS CLH_1857 NC_010723.1 1984530 1984844 D identified by glimmer; putative; hypothetical protein 1984530..1984844 Clostridium botulinum E3 str. Alaska E43 6319658 YP_001921239.1 CDS CLH_1858 NC_010723.1 1984952 1986331 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(1984952..1986331) Clostridium botulinum E3 str. Alaska E43 6319782 YP_001921240.1 CDS CLH_1859 NC_010723.1 1986763 1986996 R hypothetical protein complement(1986763..1986996) Clostridium botulinum E3 str. Alaska E43 6318125 YP_001921241.1 CDS CLH_1860 NC_010723.1 1987174 1987515 D hypothetical protein 1987174..1987515 Clostridium botulinum E3 str. Alaska E43 6320080 YP_001921242.1 CDS CLH_1861 NC_010723.1 1987752 1989710 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231; tetracycline resistance protein TetP, contain GTP-ase domain complement(1987752..1989710) Clostridium botulinum E3 str. Alaska E43 6318267 YP_001921243.1 CDS CLH_1862 NC_010723.1 1990004 1991119 R identified by match to protein family HMM PF00561; lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily complement(1990004..1991119) Clostridium botulinum E3 str. Alaska E43 6319156 YP_001921244.1 CDS CLH_1863 NC_010723.1 1991170 1991511 R hypothetical protein complement(1991170..1991511) Clostridium botulinum E3 str. Alaska E43 6319116 YP_001921245.1 CDS xth NC_010723.1 1991543 1992298 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(1991543..1992298) Clostridium botulinum E3 str. Alaska E43 6317409 YP_001921246.1 CDS CLH_1865 NC_010723.1 1992595 1992882 R identified by glimmer; putative; hypothetical protein complement(1992595..1992882) Clostridium botulinum E3 str. Alaska E43 6318037 YP_001921247.1 CDS CLH_1866 NC_010723.1 1993307 1995313 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; membrane associated methyl-accepting chemotaxis protein complement(1993307..1995313) Clostridium botulinum E3 str. Alaska E43 6320552 YP_001921248.1 CDS CLH_1867 NC_010723.1 1995551 1997527 R identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein complement(1995551..1997527) Clostridium botulinum E3 str. Alaska E43 6317715 YP_001921249.1 CDS CLH_1868 NC_010723.1 1997789 1998658 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(1997789..1998658) Clostridium botulinum E3 str. Alaska E43 6320136 YP_001921250.1 CDS CLH_1869 NC_010723.1 1999155 2000096 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein family complement(1999155..2000096) Clostridium botulinum E3 str. Alaska E43 6318477 YP_001921251.1 CDS CLH_1870 NC_010723.1 2000132 2001400 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(2000132..2001400) Clostridium botulinum E3 str. Alaska E43 6320340 YP_001921252.1 CDS CLH_1871 NC_010723.1 2001552 2001821 R 4-hydroxyphenylacetate decarboxylase, regulatory subunit complement(2001552..2001821) Clostridium botulinum E3 str. Alaska E43 6318015 YP_001921253.1 CDS CLH_1872 NC_010723.1 2001828 2004545 R identified by match to protein family HMM PF02901; 4-hydroxyphenylacetate decarboxylase, catalytic subunit complement(2001828..2004545) Clostridium botulinum E3 str. Alaska E43 6319391 YP_001921254.1 CDS CLH_1873 NC_010723.1 2004826 2005734 R identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277; metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation complement(2004826..2005734) Clostridium botulinum E3 str. Alaska E43 6318772 YP_001921255.1 CDS CLH_1874 NC_010723.1 2005763 2007808 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; Two component system histidine kinase complement(2005763..2007808) Clostridium botulinum E3 str. Alaska E43 6319288 YP_001921256.1 CDS CLH_1875 NC_010723.1 2007819 2008550 R identified by match to protein family HMM PF00196; match to protein family HMM PF08281; sigma-70, region 4 family complement(2007819..2008550) Clostridium botulinum E3 str. Alaska E43 6319770 YP_001921257.1 CDS CLH_1876 NC_010723.1 2008840 2010555 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(2008840..2010555) Clostridium botulinum E3 str. Alaska E43 6318788 YP_001921258.1 CDS CLH_1877 NC_010723.1 2010657 2011670 R identified by match to protein family HMM PF01547; periplasmic-iron-binding protein BitA complement(2010657..2011670) Clostridium botulinum E3 str. Alaska E43 6320606 YP_001921259.1 CDS CLH_1878 NC_010723.1 2012089 2014077 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative methyl-accepting chemotaxis protein complement(2012089..2014077) Clostridium botulinum E3 str. Alaska E43 6318948 YP_001921260.1 CDS CLH_1879 NC_010723.1 2014318 2015673 R identified by match to protein family HMM PF05167; hypothetical protein complement(2014318..2015673) Clostridium botulinum E3 str. Alaska E43 6318956 YP_001921261.1 CDS CLH_1880 NC_010723.1 2015688 2015957 R ACT domain-containing protein; hypothetical protein complement(2015688..2015957) Clostridium botulinum E3 str. Alaska E43 6318245 YP_001921262.1 CDS CLH_1881 NC_010723.1 2016126 2018345 R putative cell wall anchored protein complement(2016126..2018345) Clostridium botulinum E3 str. Alaska E43 6317288 YP_001921263.1 CDS CLH_1882 NC_010723.1 2018367 2019617 R identified by match to protein family HMM PF00535; N-acetylglucosaminyltransferase complement(2018367..2019617) Clostridium botulinum E3 str. Alaska E43 6317344 YP_001921264.1 CDS CLH_1883 NC_010723.1 2019629 2020984 R identified by glimmer; putative; hypothetical protein complement(2019629..2020984) Clostridium botulinum E3 str. Alaska E43 6319304 YP_001921265.1 CDS CLH_1884 NC_010723.1 2020968 2021822 R putative signaling protein complement(2020968..2021822) Clostridium botulinum E3 str. Alaska E43 6319827 YP_001921266.1 CDS CLH_1885 NC_010723.1 2021837 2023324 R putative transmembrane protein complement(2021837..2023324) Clostridium botulinum E3 str. Alaska E43 6317998 YP_001921267.1 CDS CLH_1886 NC_010723.1 2023684 2024187 R identified by glimmer; putative; hypothetical protein complement(2023684..2024187) Clostridium botulinum E3 str. Alaska E43 6319460 YP_001921268.1 CDS CLH_1887 NC_010723.1 2024270 2024446 R identified by glimmer; putative; hypothetical protein complement(2024270..2024446) Clostridium botulinum E3 str. Alaska E43 6317649 YP_001921269.1 CDS CLH_1888 NC_010723.1 2024579 2025088 R identified by match to protein family HMM PF06177; citrulline cluster-linked gene complement(2024579..2025088) Clostridium botulinum E3 str. Alaska E43 6319621 YP_001921270.1 CDS galE NC_010723.1 2025676 2026665 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(2025676..2026665) Clostridium botulinum E3 str. Alaska E43 6317863 YP_001921271.1 CDS CLH_1890 NC_010723.1 2026812 2027489 R identified by match to protein family HMM PF04607; GTP-pyrophosphokinase complement(2026812..2027489) Clostridium botulinum E3 str. Alaska E43 6319670 YP_001921272.1 CDS CLH_1891 NC_010723.1 2027696 2029051 D identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 2027696..2029051 Clostridium botulinum E3 str. Alaska E43 6317876 YP_001921273.1 CDS CLH_1892 NC_010723.1 2029398 2031443 D identified by match to protein family HMM PF00395; match to protein family HMM PF03413; putative propeptide, PepSY amd peptidase M4 2029398..2031443 Clostridium botulinum E3 str. Alaska E43 6317757 YP_001921274.1 CDS CLH_1893 NC_010723.1 2031766 2032245 R Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated; methylated-DNA--protein-cysteine methyltransferase complement(2031766..2032245) Clostridium botulinum E3 str. Alaska E43 6319319 YP_001921275.1 CDS CLH_1894 NC_010723.1 2032281 2033093 R identified by match to protein family HMM PF00896; match to protein family HMM TIGR01697; match to protein family HMM TIGR01700; purine nucleoside phosphorylase I complement(2032281..2033093) Clostridium botulinum E3 str. Alaska E43 6319878 YP_001921276.1 CDS tyrS NC_010723.1 2033164 2034378 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(2033164..2034378) Clostridium botulinum E3 str. Alaska E43 6318765 YP_001921277.1 CDS CLH_1896 NC_010723.1 2035477 2036772 R identified by match to protein family HMM PF01979; amidohydrolase complement(2035477..2036772) Clostridium botulinum E3 str. Alaska E43 6319163 YP_001921278.1 CDS pyc NC_010723.1 2037177 2040617 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(2037177..2040617) Clostridium botulinum E3 str. Alaska E43 6318170 YP_001921279.1 CDS CLH_1898 NC_010723.1 2041410 2042783 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(2041410..2042783) Clostridium botulinum E3 str. Alaska E43 6320300 YP_001921280.1 CDS xpt NC_010723.1 2043149 2043721 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(2043149..2043721) Clostridium botulinum E3 str. Alaska E43 6317886 YP_001921281.1 CDS CLH_1900 NC_010723.1 2043724 2045088 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease complement(2043724..2045088) Clostridium botulinum E3 str. Alaska E43 6319026 YP_001921282.1 CDS CLH_1901 NC_010723.1 2045424 2046611 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(2045424..2046611) Clostridium botulinum E3 str. Alaska E43 6320536 YP_001921283.1 CDS CLH_1902 NC_010723.1 2047132 2048502 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(2047132..2048502) Clostridium botulinum E3 str. Alaska E43 6317277 YP_001921284.1 CDS CLH_1903 NC_010723.1 2048772 2051696 R identified by match to protein family HMM PF00929; putative exonuclease complement(2048772..2051696) Clostridium botulinum E3 str. Alaska E43 6317726 YP_001921285.1 CDS CLH_1904 NC_010723.1 2051706 2051852 R identified by glimmer; putative; hypothetical protein complement(2051706..2051852) Clostridium botulinum E3 str. Alaska E43 6319464 YP_001921286.1 CDS CLH_1905 NC_010723.1 2052201 2052452 R identified by glimmer; putative; hypothetical protein complement(2052201..2052452) Clostridium botulinum E3 str. Alaska E43 6319380 YP_001921287.1 CDS CLH_1906 NC_010723.1 2052547 2052738 R identified by glimmer; putative; hypothetical protein complement(2052547..2052738) Clostridium botulinum E3 str. Alaska E43 6317961 YP_001921288.1 CDS CLH_1907 NC_010723.1 2052787 2053284 R identified by glimmer; putative; hypothetical protein complement(2052787..2053284) Clostridium botulinum E3 str. Alaska E43 6319446 YP_001921289.1 CDS CLH_1908 NC_010723.1 2053388 2054458 R identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714; N- phage replisome organizer complement(2053388..2054458) Clostridium botulinum E3 str. Alaska E43 6320308 YP_001921290.1 CDS CLH_1909 NC_010723.1 2054918 2055586 R identified by glimmer; putative; hypothetical protein complement(2054918..2055586) Clostridium botulinum E3 str. Alaska E43 6318654 YP_001921291.1 CDS CLH_1910 NC_010723.1 2055901 2056179 D hypothetical protein 2055901..2056179 Clostridium botulinum E3 str. Alaska E43 6318211 YP_001921292.1 CDS CLH_1911 NC_010723.1 2056456 2057118 D identified by match to protein family HMM PF07299; putative fibronectin-binding protein 2056456..2057118 Clostridium botulinum E3 str. Alaska E43 6318651 YP_001921293.1 CDS CLH_1912 NC_010723.1 2057330 2057578 R hypothetical protein complement(2057330..2057578) Clostridium botulinum E3 str. Alaska E43 6317616 YP_001921294.1 CDS CLH_1913 NC_010723.1 2057692 2059272 R alpha/beta superfamily hydrolase complement(2057692..2059272) Clostridium botulinum E3 str. Alaska E43 6317430 YP_001921295.1 CDS CLH_1914 NC_010723.1 2059451 2060857 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; hypothetical protein complement(2059451..2060857) Clostridium botulinum E3 str. Alaska E43 6317379 YP_001921296.1 CDS CLH_1915 NC_010723.1 2060866 2061567 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein ResD complement(2060866..2061567) Clostridium botulinum E3 str. Alaska E43 6317724 YP_001921297.1 CDS CLH_1916 NC_010723.1 2061879 2062532 R identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428; CoA-transferase subunit B complement(2061879..2062532) Clostridium botulinum E3 str. Alaska E43 6319463 YP_001921298.1 CDS CLH_1917 NC_010723.1 2062546 2063262 R identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429; CoA-transferase subunit A complement(2062546..2063262) Clostridium botulinum E3 str. Alaska E43 6319799 YP_001921299.1 CDS CLH_1918 NC_010723.1 2063796 2065472 R identified by match to protein family HMM PF08011; hypothetical protein complement(2063796..2065472) Clostridium botulinum E3 str. Alaska E43 6318545 YP_001921300.1 CDS CLH_1919 NC_010723.1 2065585 2066046 R identified by glimmer; putative; hypothetical protein complement(2065585..2066046) Clostridium botulinum E3 str. Alaska E43 6319184 YP_001921301.1 CDS CLH_1920 NC_010723.1 2066022 2066783 R hypothetical protein complement(2066022..2066783) Clostridium botulinum E3 str. Alaska E43 6317983 YP_001921302.1 CDS CLH_1921 NC_010723.1 2067038 2067598 R identified by glimmer; putative; hypothetical protein complement(2067038..2067598) Clostridium botulinum E3 str. Alaska E43 6319729 YP_001921303.1 CDS CLH_1922 NC_010723.1 2067610 2067774 R filamentation induced by cAMP protein fic complement(2067610..2067774) Clostridium botulinum E3 str. Alaska E43 6317704 YP_001921304.1 CDS dndB NC_010723.1 2068299 2069387 D identified by match to protein family HMM TIGR03187; match to protein family HMM TIGR03233; DNA sulfur modification protein DndB 2068299..2069387 Clostridium botulinum E3 str. Alaska E43 6318582 YP_001921305.1 CDS dndC NC_010723.1 2069387 2071015 D identified by match to protein family HMM TIGR03183; hypothetical protein 2069387..2071015 Clostridium botulinum E3 str. Alaska E43 6317932 YP_001921306.1 CDS dndD NC_010723.1 2071005 2073164 D identified by match to protein family HMM TIGR03185; DNA sulfur modification protein DndD 2071005..2073164 Clostridium botulinum E3 str. Alaska E43 6319039 YP_001921307.1 CDS CLH_1926 NC_010723.1 2073167 2073556 D hypothetical protein 2073167..2073556 Clostridium botulinum E3 str. Alaska E43 6317478 YP_001921308.1 CDS CLH_1927 NC_010723.1 2073553 2074749 D identified by match to protein family HMM PF00266; cysteine desulfurase 2073553..2074749 Clostridium botulinum E3 str. Alaska E43 6320153 YP_001921309.1 CDS CLH_1928 NC_010723.1 2074753 2075529 R identified by glimmer; putative; hypothetical protein complement(2074753..2075529) Clostridium botulinum E3 str. Alaska E43 6317678 YP_001921310.1 CDS CLH_1929 NC_010723.1 2075577 2077373 R identified by match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein complement(2075577..2077373) Clostridium botulinum E3 str. Alaska E43 6317839 YP_001921311.1 CDS CLH_1930 NC_010723.1 2077508 2082769 R hypothetical protein complement(2077508..2082769) Clostridium botulinum E3 str. Alaska E43 6319829 YP_001921312.1 CDS CLH_1931 NC_010723.1 2082750 2084165 R hypothetical protein complement(2082750..2084165) Clostridium botulinum E3 str. Alaska E43 6319499 YP_001921313.1 CDS CLH_1932 NC_010723.1 2084165 2086567 R hypothetical protein complement(2084165..2086567) Clostridium botulinum E3 str. Alaska E43 6320148 YP_001921314.1 CDS CLH_1933 NC_010723.1 2086875 2087999 R hypothetical protein complement(2086875..2087999) Clostridium botulinum E3 str. Alaska E43 6317881 YP_001921315.1 CDS CLH_1934 NC_010723.1 2088247 2088957 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(2088247..2088957) Clostridium botulinum E3 str. Alaska E43 6320292 YP_001921316.1 CDS dhaT NC_010723.1 2089091 2090248 R identified by match to protein family HMM PF00465; 1,3-propanediol dehydrogenase complement(2089091..2090248) Clostridium botulinum E3 str. Alaska E43 6318644 YP_001921317.1 CDS CLH_1936 NC_010723.1 2090383 2090808 R identified by match to protein family HMM PF03928; DhaG protein complement(2090383..2090808) Clostridium botulinum E3 str. Alaska E43 6320356 YP_001921318.1 CDS CLH_1937 NC_010723.1 2090826 2091338 R identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase complement(2090826..2091338) Clostridium botulinum E3 str. Alaska E43 6320485 YP_001921319.1 CDS CLH_1938 NC_010723.1 2091360 2091719 R glycerol dehydratase reactivation factor, small subunit complement(2091360..2091719) Clostridium botulinum E3 str. Alaska E43 6319266 YP_001921320.1 CDS CLH_1939 NC_010723.1 2091719 2093557 R identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit complement(2091719..2093557) Clostridium botulinum E3 str. Alaska E43 6318368 YP_001921321.1 CDS CLH_1940 NC_010723.1 2093585 2094007 R identified by match to protein family HMM PF02287; coenzyme B12-dependent glycerol dehydratase, small subunit complement(2093585..2094007) Clostridium botulinum E3 str. Alaska E43 6320397 YP_001921322.1 CDS CLH_1941 NC_010723.1 2094029 2094604 R identified by match to protein family HMM PF02288; propanediol utilization: dehydratase, medium subunit complement(2094029..2094604) Clostridium botulinum E3 str. Alaska E43 6320237 YP_001921323.1 CDS CLH_1942 NC_010723.1 2094622 2096286 R identified by match to protein family HMM PF02286; coenzyme B12-dependent glycerol dehydratase, large subunit complement(2094622..2096286) Clostridium botulinum E3 str. Alaska E43 6317405 YP_001921324.1 CDS CLH_1943 NC_010723.1 2096601 2097335 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator complement(2096601..2097335) Clostridium botulinum E3 str. Alaska E43 6319617 YP_001921325.1 CDS CLH_1944 NC_010723.1 2097351 2098592 R identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase complement(2097351..2098592) Clostridium botulinum E3 str. Alaska E43 6318305 YP_001921326.1 CDS CLH_1945 NC_010723.1 2098943 2102257 D identified by match to protein family HMM PF01473; match to protein family HMM PF07554; hypothetical protein 2098943..2102257 Clostridium botulinum E3 str. Alaska E43 6318210 YP_001921327.1 CDS CLH_1946 NC_010723.1 2102385 2103527 R identified by match to protein family HMM PF04326; divergent AAA domain family complement(2102385..2103527) Clostridium botulinum E3 str. Alaska E43 6320530 YP_001921328.1 CDS CLH_1947 NC_010723.1 2103690 2103977 R identified by match to protein family HMM PF01909; DNA polymerase, beta domain-containing protein region complement(2103690..2103977) Clostridium botulinum E3 str. Alaska E43 6318745 YP_001921329.1 CDS CLH_1948 NC_010723.1 2103983 2104420 R identified by match to protein family HMM PF08780; match to protein family HMM TIGR01987; putative nucleotidyltransferase substrate binding protein complement(2103983..2104420) Clostridium botulinum E3 str. Alaska E43 6319795 YP_001921330.1 CDS CLH_1949 NC_010723.1 2104673 2105524 D identified by match to protein family HMM PF00248; morphine 6-dehydrogenase 2104673..2105524 Clostridium botulinum E3 str. Alaska E43 6318951 YP_001921331.1 CDS CLH_1950 NC_010723.1 2106091 2106876 R identified by match to protein family HMM PF00005; ferric enterobactin transport ATP-binding protein FepC complement(2106091..2106876) Clostridium botulinum E3 str. Alaska E43 6317655 YP_001921332.1 CDS CLH_1951 NC_010723.1 2106911 2107927 R identified by match to protein family HMM PF01032; ferrichrome transport system permease FhuG complement(2106911..2107927) Clostridium botulinum E3 str. Alaska E43 6318816 YP_001921333.1 CDS CLH_1952 NC_010723.1 2107928 2108941 R identified by match to protein family HMM PF01032; ferrichrome transport system permease FhuB complement(2107928..2108941) Clostridium botulinum E3 str. Alaska E43 6317272 YP_001921334.1 CDS CLH_1953 NC_010723.1 2109030 2109971 R identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2109030..2109971) Clostridium botulinum E3 str. Alaska E43 6320563 YP_001921335.1 CDS CLH_1954 NC_010723.1 2110147 2110308 R hypothetical protein complement(2110147..2110308) Clostridium botulinum E3 str. Alaska E43 6320129 YP_001921336.1 CDS CLH_1955 NC_010723.1 2110574 2112004 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, glucose-like IIB component complement(2110574..2112004) Clostridium botulinum E3 str. Alaska E43 6318314 YP_001921337.1 CDS CLH_1956 NC_010723.1 2112023 2113696 R identified by match to protein family HMM PF00128; oligo-1,6-glucosidase complement(2112023..2113696) Clostridium botulinum E3 str. Alaska E43 6317889 YP_001921338.1 CDS CLH_1957 NC_010723.1 2113707 2114552 R identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484; putative hydrolase complement(2113707..2114552) Clostridium botulinum E3 str. Alaska E43 6318659 YP_001921339.1 CDS CLH_1958 NC_010723.1 2114659 2115435 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(2114659..2115435) Clostridium botulinum E3 str. Alaska E43 6318117 YP_001921340.1 CDS CLH_1959 NC_010723.1 2115432 2116190 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(2115432..2116190) Clostridium botulinum E3 str. Alaska E43 6318743 YP_001921341.1 CDS CLH_1960 NC_010723.1 2116219 2116533 R membrane spanning protein complement(2116219..2116533) Clostridium botulinum E3 str. Alaska E43 6318004 YP_001921342.1 CDS CLH_1961 NC_010723.1 2116843 2117388 D identified by glimmer; putative; hypothetical protein 2116843..2117388 Clostridium botulinum E3 str. Alaska E43 6318941 YP_001921343.1 CDS CLH_1962 NC_010723.1 2117547 2118218 D identified by glimmer; putative; hypothetical protein 2117547..2118218 Clostridium botulinum E3 str. Alaska E43 6320012 YP_001921344.1 CDS CLH_1963 NC_010723.1 2118299 2119519 R FliB family protein complement(2118299..2119519) Clostridium botulinum E3 str. Alaska E43 6319605 YP_001921345.1 CDS CLH_1964 NC_010723.1 2119543 2120022 R identified by glimmer; putative; hypothetical protein complement(2119543..2120022) Clostridium botulinum E3 str. Alaska E43 6320466 YP_001921346.1 CDS CLH_1965 NC_010723.1 2120317 2120631 D identified by glimmer; putative; hypothetical protein 2120317..2120631 Clostridium botulinum E3 str. Alaska E43 6320287 YP_001921347.1 CDS CLH_1966 NC_010723.1 2120720 2120989 R hypothetical protein complement(2120720..2120989) Clostridium botulinum E3 str. Alaska E43 6319334 YP_001921348.1 CDS CLH_1967 NC_010723.1 2121001 2121291 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2121001..2121291) Clostridium botulinum E3 str. Alaska E43 6318955 YP_001921349.1 CDS CLH_1968 NC_010723.1 2121457 2122071 R hypothetical protein complement(2121457..2122071) Clostridium botulinum E3 str. Alaska E43 6318360 YP_001921350.1 CDS CLH_1969 NC_010723.1 2122278 2123108 R identified by match to protein family HMM PF00149; phosphoesterase complement(2122278..2123108) Clostridium botulinum E3 str. Alaska E43 6319863 YP_001921351.1 CDS CLH_1970 NC_010723.1 2123162 2123563 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(2123162..2123563) Clostridium botulinum E3 str. Alaska E43 6320200 YP_001921352.1 CDS CLH_1971 NC_010723.1 2123603 2124676 R identified by match to protein family HMM PF02016; bacteriocin immunity protein complement(2123603..2124676) Clostridium botulinum E3 str. Alaska E43 6319232 YP_001921353.1 CDS CLH_1972 NC_010723.1 2124756 2124911 R identified by glimmer; putative; hypothetical protein complement(2124756..2124911) Clostridium botulinum E3 str. Alaska E43 6318718 YP_001921354.1 CDS CLH_1973 NC_010723.1 2124980 2125531 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2124980..2125531) Clostridium botulinum E3 str. Alaska E43 6318658 YP_001921355.1 CDS CLH_1974 NC_010723.1 2125609 2126037 R identified by match to protein family HMM PF05014; nucleoside 2-deoxyribosyltransferase complement(2125609..2126037) Clostridium botulinum E3 str. Alaska E43 6317634 YP_001921356.1 CDS CLH_1975 NC_010723.1 2126180 2126773 R identified by match to protein family HMM PF00132; maltose O-acetyltransferase complement(2126180..2126773) Clostridium botulinum E3 str. Alaska E43 6317258 YP_001921357.1 CDS CLH_1976 NC_010723.1 2126977 2128713 R identified by match to protein family HMM PF05569; peptidase, M56 family protein complement(2126977..2128713) Clostridium botulinum E3 str. Alaska E43 6318517 YP_001921358.1 CDS CLH_1977 NC_010723.1 2128710 2129093 R identified by match to protein family HMM PF03965; penicillinase repressor complement(2128710..2129093) Clostridium botulinum E3 str. Alaska E43 6319551 YP_001921359.1 CDS CLH_1978 NC_010723.1 2129377 2129499 R identified by glimmer; putative; hypothetical protein complement(2129377..2129499) Clostridium botulinum E3 str. Alaska E43 6319286 YP_001921360.1 CDS CLH_1979 NC_010723.1 2129586 2130008 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2129586..2130008) Clostridium botulinum E3 str. Alaska E43 6320363 YP_001921361.1 CDS CLH_1980 NC_010723.1 2130183 2130392 D identified by match to protein family HMM PF01381; hypothetical protein 2130183..2130392 Clostridium botulinum E3 str. Alaska E43 6319558 YP_001921362.1 CDS CLH_1981 NC_010723.1 2130385 2130852 D identified by glimmer; putative; hypothetical protein 2130385..2130852 Clostridium botulinum E3 str. Alaska E43 6318476 YP_001921363.1 CDS CLH_1982 NC_010723.1 2130889 2131020 R hydrolase, isochorismatase family complement(2130889..2131020) Clostridium botulinum E3 str. Alaska E43 6318115 YP_001921364.1 CDS CLH_1983 NC_010723.1 2131067 2131579 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2131067..2131579) Clostridium botulinum E3 str. Alaska E43 6317546 YP_001921365.1 CDS CLH_1984 NC_010723.1 2131852 2131977 R identified by glimmer; putative; hypothetical protein complement(2131852..2131977) Clostridium botulinum E3 str. Alaska E43 6317608 YP_001921366.1 CDS CLH_1985 NC_010723.1 2132043 2132483 R identified by match to protein family HMM PF00583; acetyltransferase complement(2132043..2132483) Clostridium botulinum E3 str. Alaska E43 6317978 YP_001921367.1 CDS CLH_1986 NC_010723.1 2132538 2132882 R hypothetical protein complement(2132538..2132882) Clostridium botulinum E3 str. Alaska E43 6318063 YP_001921368.1 CDS CLH_1987 NC_010723.1 2133366 2133833 R hypothetical protein complement(2133366..2133833) Clostridium botulinum E3 str. Alaska E43 6319272 YP_001921369.1 CDS CLH_1988 NC_010723.1 2134131 2134457 D identified by glimmer; putative; hypothetical protein 2134131..2134457 Clostridium botulinum E3 str. Alaska E43 6317987 YP_001921370.1 CDS CLH_1989 NC_010723.1 2134640 2135743 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2134640..2135743) Clostridium botulinum E3 str. Alaska E43 6318226 YP_001921371.1 CDS CLH_1990 NC_010723.1 2135994 2136536 R identified by glimmer; putative; hypothetical protein complement(2135994..2136536) Clostridium botulinum E3 str. Alaska E43 6319817 YP_001921372.1 CDS CLH_1991 NC_010723.1 2136781 2137062 D identified by match to protein family HMM PF01022; transcriptional regulator ArsR family 2136781..2137062 Clostridium botulinum E3 str. Alaska E43 6318882 YP_001921373.1 CDS CLH_1992 NC_010723.1 2137067 2137711 D identified by match to protein family HMM PF07853; hypothetical protein 2137067..2137711 Clostridium botulinum E3 str. Alaska E43 6320612 YP_001921374.1 CDS CLH_1993 NC_010723.1 2138021 2139253 D identified by match to protein family HMM PF00999; GerN 2138021..2139253 Clostridium botulinum E3 str. Alaska E43 6318562 YP_001921375.1 CDS CLH_1994 NC_010723.1 2139280 2139936 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(2139280..2139936) Clostridium botulinum E3 str. Alaska E43 6319157 YP_001921376.1 CDS CLH_1995 NC_010723.1 2140020 2140445 R identified by glimmer; putative; hypothetical protein complement(2140020..2140445) Clostridium botulinum E3 str. Alaska E43 6320132 YP_001921377.1 CDS CLH_1996 NC_010723.1 2140438 2140806 R identified by match to protein family HMM PF01909; DNA polymerase, beta domain-containing protein region complement(2140438..2140806) Clostridium botulinum E3 str. Alaska E43 6319172 YP_001921378.1 CDS CLH_1997 NC_010723.1 2141122 2143131 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(2141122..2143131) Clostridium botulinum E3 str. Alaska E43 6318259 YP_001921379.1 CDS CLH_1998 NC_010723.1 2143406 2146036 R identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2143406..2146036) Clostridium botulinum E3 str. Alaska E43 6320613 YP_001921380.1 CDS CLH_1999 NC_010723.1 2146257 2147297 R hypothetical protein complement(2146257..2147297) Clostridium botulinum E3 str. Alaska E43 6318558 YP_001921381.1 CDS CLH_2000 NC_010723.1 2147302 2147856 R identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor complement(2147302..2147856) Clostridium botulinum E3 str. Alaska E43 6317946 YP_001921382.1 CDS CLH_2001 NC_010723.1 2148147 2149613 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; polysaccharide biosynthesis protein 2148147..2149613 Clostridium botulinum E3 str. Alaska E43 6319848 YP_001921383.1 CDS CLH_2002 NC_010723.1 2149765 2151012 R identified by glimmer; putative; hypothetical protein complement(2149765..2151012) Clostridium botulinum E3 str. Alaska E43 6319516 YP_001921384.1 CDS CLH_2003 NC_010723.1 2151054 2152331 R identified by glimmer; putative; hypothetical protein complement(2151054..2152331) Clostridium botulinum E3 str. Alaska E43 6318342 YP_001921385.1 CDS CLH_2004 NC_010723.1 2152514 2152939 D hypothetical protein 2152514..2152939 Clostridium botulinum E3 str. Alaska E43 6318225 YP_001921386.1 CDS CLH_2005 NC_010723.1 2152926 2153369 D hypothetical protein 2152926..2153369 Clostridium botulinum E3 str. Alaska E43 6317397 YP_001921387.1 CDS CLH_2006 NC_010723.1 2153485 2154132 R identified by match to protein family HMM PF02525; FMN-dependent NADH-azoreductase family protein complement(2153485..2154132) Clostridium botulinum E3 str. Alaska E43 6320070 YP_001921388.1 CDS CLH_2007 NC_010723.1 2154222 2155583 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; subtilin biosynthesis sensor protein SpaK complement(2154222..2155583) Clostridium botulinum E3 str. Alaska E43 6319458 YP_001921389.1 CDS CLH_2008 NC_010723.1 2155571 2156233 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; subtilin biosynthesis regulatory protein SpaR complement(2155571..2156233) Clostridium botulinum E3 str. Alaska E43 6319897 YP_001921390.1 CDS CLH_2009 NC_010723.1 2156261 2157019 R lantibiotic transport-associated permease SpaG/mutG complement(2156261..2157019) Clostridium botulinum E3 str. Alaska E43 6317292 YP_001921391.1 CDS CLH_2010 NC_010723.1 2157026 2157772 R lantibiotic permease protein SpaE/mutE complement(2157026..2157772) Clostridium botulinum E3 str. Alaska E43 6319171 YP_001921392.1 CDS CLH_2011 NC_010723.1 2157776 2158480 R identified by match to protein family HMM PF00005; bacitracin transport ATP-binding protein BcrA complement(2157776..2158480) Clostridium botulinum E3 str. Alaska E43 6320541 YP_001921393.1 CDS CLH_2012 NC_010723.1 2158569 2159309 R identified by match to protein family HMM PF01863; hypothetical protein complement(2158569..2159309) Clostridium botulinum E3 str. Alaska E43 6319672 YP_001921394.1 CDS CLH_2013 NC_010723.1 2159391 2159699 R identified by glimmer; putative; hypothetical protein complement(2159391..2159699) Clostridium botulinum E3 str. Alaska E43 6318869 YP_001921395.1 CDS CLH_2014 NC_010723.1 2160122 2160292 R flavodoxin complement(2160122..2160292) Clostridium botulinum E3 str. Alaska E43 6319769 YP_001921396.1 CDS CLH_2015 NC_010723.1 2160691 2160963 D hypothetical protein 2160691..2160963 Clostridium botulinum E3 str. Alaska E43 6317245 YP_001921397.1 CDS CLH_2016 NC_010723.1 2161070 2162071 R identified by match to protein family HMM PF00877; putative surface antigen complement(2161070..2162071) Clostridium botulinum E3 str. Alaska E43 6320279 YP_001921398.1 CDS CLH_2017 NC_010723.1 2162524 2162898 R hypothetical protein complement(2162524..2162898) Clostridium botulinum E3 str. Alaska E43 6318411 YP_001921399.1 CDS CLH_2018 NC_010723.1 2163264 2163524 D hypothetical protein 2163264..2163524 Clostridium botulinum E3 str. Alaska E43 6318098 YP_001921400.1 CDS CLH_2019 NC_010723.1 2163800 2164195 D thioesterase family protein 2163800..2164195 Clostridium botulinum E3 str. Alaska E43 6318050 YP_001921401.1 CDS CLH_2020 NC_010723.1 2164425 2165246 R hypothetical protein complement(2164425..2165246) Clostridium botulinum E3 str. Alaska E43 6319572 YP_001921402.1 CDS CLH_2021 NC_010723.1 2165439 2166440 R identified by glimmer; putative; hypothetical protein complement(2165439..2166440) Clostridium botulinum E3 str. Alaska E43 6320224 YP_001921403.1 CDS CLH_2022 NC_010723.1 2166424 2166921 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor complement(2166424..2166921) Clostridium botulinum E3 str. Alaska E43 6317796 YP_001921404.1 CDS CLH_2023 NC_010723.1 2167220 2168311 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(2167220..2168311) Clostridium botulinum E3 str. Alaska E43 6318278 YP_001921405.1 CDS CLH_2024 NC_010723.1 2168713 2169261 D identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; 50S ribosomal protein L25 2168713..2169261 Clostridium botulinum E3 str. Alaska E43 6318215 YP_001921406.1 CDS CLH_2025 NC_010723.1 2169501 2170046 D identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; 50S ribosomal protein L25 2169501..2170046 Clostridium botulinum E3 str. Alaska E43 6320293 YP_001921407.1 CDS CLH_2026 NC_010723.1 2170340 2172097 R identified by match to protein family HMM PF00271; ATP-dependent RNA helicase, superfamily II complement(2170340..2172097) Clostridium botulinum E3 str. Alaska E43 6319535 YP_001921408.1 CDS CLH_2027 NC_010723.1 2172475 2173233 D hypothetical protein 2172475..2173233 Clostridium botulinum E3 str. Alaska E43 6318795 YP_001921409.1 CDS aroD NC_010723.1 2173408 2174187 R identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase complement(2173408..2174187) Clostridium botulinum E3 str. Alaska E43 6319768 YP_001921410.1 CDS CLH_2029 NC_010723.1 2174237 2174635 R identified by glimmer; putative; hypothetical protein complement(2174237..2174635) Clostridium botulinum E3 str. Alaska E43 6320449 YP_001921411.1 CDS pepT NC_010723.1 2174677 2175897 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(2174677..2175897) Clostridium botulinum E3 str. Alaska E43 6319050 YP_001921412.1 CDS CLH_2031 NC_010723.1 2176135 2177910 R identified by match to protein family HMM PF03961; hypothetical protein complement(2176135..2177910) Clostridium botulinum E3 str. Alaska E43 6318938 YP_001921413.1 CDS CLH_2032 NC_010723.1 2178464 2178709 D identified by glimmer; putative; hypothetical protein 2178464..2178709 Clostridium botulinum E3 str. Alaska E43 6320327 YP_001921414.1 CDS CLH_2033 NC_010723.1 2178872 2180236 R identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08239; surface protective antigen SpaB complement(2178872..2180236) Clostridium botulinum E3 str. Alaska E43 6320211 YP_001921415.1 CDS CLH_2034 NC_010723.1 2180665 2184213 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2180665..2184213 Clostridium botulinum E3 str. Alaska E43 6318078 YP_001921416.1 CDS CLH_2035 NC_010723.1 2184638 2187784 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; MorA 2184638..2187784 Clostridium botulinum E3 str. Alaska E43 6319417 YP_001921417.1 CDS CLH_2036 NC_010723.1 2188001 2188720 D identified by match to protein family HMM PF01171; ExsB family protein 2188001..2188720 Clostridium botulinum E3 str. Alaska E43 6317441 YP_001921418.1 CDS CLH_2037 NC_010723.1 2188799 2189422 R hypothetical protein complement(2188799..2189422) Clostridium botulinum E3 str. Alaska E43 6317560 YP_001921419.1 CDS CLH_2038 NC_010723.1 2189842 2190450 D hypothetical protein 2189842..2190450 Clostridium botulinum E3 str. Alaska E43 6319176 YP_001921420.1 CDS sfsA NC_010723.1 2190482 2191174 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 2190482..2191174 Clostridium botulinum E3 str. Alaska E43 6317940 YP_001921421.1 CDS CLH_2040 NC_010723.1 2191327 2191731 R identified by match to protein family HMM PF01451; arsenate reductase complement(2191327..2191731) Clostridium botulinum E3 str. Alaska E43 6320586 YP_001921422.1 CDS CLH_2041 NC_010723.1 2191759 2192085 R identified by match to protein family HMM PF01022; arsenical resistance operon repressor complement(2191759..2192085) Clostridium botulinum E3 str. Alaska E43 6319930 YP_001921423.1 CDS CLH_2042 NC_010723.1 2192723 2193175 D identified by match to protein family HMM PF00583; GnaT-family acetyltransferase 2192723..2193175 Clostridium botulinum E3 str. Alaska E43 6318147 YP_001921424.1 CDS CLH_2043 NC_010723.1 2193205 2193360 R hypothetical protein complement(2193205..2193360) Clostridium botulinum E3 str. Alaska E43 6317619 YP_001921425.1 CDS CLH_2044 NC_010723.1 2193562 2195454 R identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; heat-responsive suppressor HrsA complement(2193562..2195454) Clostridium botulinum E3 str. Alaska E43 6319018 YP_001921426.1 CDS pfkB NC_010723.1 2195476 2196378 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 1-phosphofructokinase complement(2195476..2196378) Clostridium botulinum E3 str. Alaska E43 6319107 YP_001921427.1 CDS CLH_2046 NC_010723.1 2196371 2197126 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; fructose repressor complement(2196371..2197126) Clostridium botulinum E3 str. Alaska E43 6317745 YP_001921428.1 CDS CLH_2047 NC_010723.1 2197812 2198507 R identified by match to protein family HMM PF02811; PHP domain-containing protein complement(2197812..2198507) Clostridium botulinum E3 str. Alaska E43 6319066 YP_001921429.1 CDS CLH_2048 NC_010723.1 2198639 2199997 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(2198639..2199997) Clostridium botulinum E3 str. Alaska E43 6320057 YP_001921430.1 CDS CLH_2049 NC_010723.1 2200215 2200763 R identified by match to protein family HMM PF00300; putative phosphoglycerate mutase family protein complement(2200215..2200763) Clostridium botulinum E3 str. Alaska E43 6319532 YP_001921431.1 CDS CLH_2050 NC_010723.1 2201273 2202970 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; periplasmic [Fe] hydrogenase 1 complement(2201273..2202970) Clostridium botulinum E3 str. Alaska E43 6319961 YP_001921432.1 CDS CLH_2051 NC_010723.1 2203013 2204893 R identified by match to protein family HMM PF00037; match to protein family HMM PF01512; putative iron hydrogenase, electron-transfer subunit complement(2203013..2204893) Clostridium botulinum E3 str. Alaska E43 6319244 YP_001921433.1 CDS CLH_2052 NC_010723.1 2204883 2205374 R identified by match to protein family HMM PF01257; Fe-hydrogenase gamma subunit complement(2204883..2205374) Clostridium botulinum E3 str. Alaska E43 6318096 YP_001921434.1 CDS CLH_2053 NC_010723.1 2205747 2205899 R identified by glimmer; putative; hypothetical protein complement(2205747..2205899) Clostridium botulinum E3 str. Alaska E43 6319717 YP_001921435.1 CDS CLH_2054 NC_010723.1 2206196 2207623 D identified by match to protein family HMM PF00614; cardiolipin synthetase 2206196..2207623 Clostridium botulinum E3 str. Alaska E43 6317570 YP_001921436.1 CDS CLH_2055 NC_010723.1 2207730 2208920 D identified by match to protein family HMM PF01594; hypothetical protein 2207730..2208920 Clostridium botulinum E3 str. Alaska E43 6320439 YP_001921437.1 CDS CLH_2056 NC_010723.1 2208988 2210070 R identified by match to protein family HMM PF00561; lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily complement(2208988..2210070) Clostridium botulinum E3 str. Alaska E43 6318358 YP_001921438.1 CDS CLH_2057 NC_010723.1 2210524 2211072 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2210524..2211072) Clostridium botulinum E3 str. Alaska E43 6319004 YP_001921439.1 CDS CLH_2058 NC_010723.1 2211340 2212662 R identified by match to protein family HMM PF00324; match to protein family HMM PF03222; match to protein family HMM PF03845; amino acid permease complement(2211340..2212662) Clostridium botulinum E3 str. Alaska E43 6317572 YP_001921440.1 CDS CLH_2059 NC_010723.1 2212961 2213422 R identified by match to protein family HMM PF06496; glutathione-regulated potassium-efflux system protein complement(2212961..2213422) Clostridium botulinum E3 str. Alaska E43 6320508 YP_001921441.1 CDS CLH_2060 NC_010723.1 2213661 2214899 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(2213661..2214899) Clostridium botulinum E3 str. Alaska E43 6318576 YP_001921442.1 CDS CLH_2061 NC_010723.1 2214899 2216170 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; oxidoreductase YeiT complement(2214899..2216170) Clostridium botulinum E3 str. Alaska E43 6320174 YP_001921443.1 CDS CLH_2062 NC_010723.1 2217260 2218381 R identified by glimmer; putative; hypothetical protein complement(2217260..2218381) Clostridium botulinum E3 str. Alaska E43 6319803 YP_001921444.1 CDS CLH_2063 NC_010723.1 2218388 2219050 R Heat shock-induced; putative RNA polymerase sigma factor SigI complement(2218388..2219050) Clostridium botulinum E3 str. Alaska E43 6319355 YP_001921445.1 CDS CLH_2064 NC_010723.1 2219414 2220466 R identified by glimmer; putative; hypothetical protein complement(2219414..2220466) Clostridium botulinum E3 str. Alaska E43 6320521 YP_001921446.1 CDS CLH_2065 NC_010723.1 2220653 2221930 D identified by glimmer; putative; hypothetical protein 2220653..2221930 Clostridium botulinum E3 str. Alaska E43 6317656 YP_001921447.1 CDS CLH_2066 NC_010723.1 2221977 2226230 D identified by glimmer; putative; hypothetical protein 2221977..2226230 Clostridium botulinum E3 str. Alaska E43 6318091 YP_001921448.1 CDS CLH_2067 NC_010723.1 2226331 2226939 R putative ribonuclease complement(2226331..2226939) Clostridium botulinum E3 str. Alaska E43 6319524 YP_001921449.1 CDS CLH_2068 NC_010723.1 2227211 2228260 R identified by glimmer; putative; hypothetical protein complement(2227211..2228260) Clostridium botulinum E3 str. Alaska E43 6320048 YP_001921450.1 CDS CLH_2069 NC_010723.1 2228475 2231627 R identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08455; ATP-dependent helicase complement(2228475..2231627) Clostridium botulinum E3 str. Alaska E43 6319449 YP_001921451.1 CDS CLH_2070 NC_010723.1 2231834 2232352 R identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ family molecular chaperone complement(2231834..2232352) Clostridium botulinum E3 str. Alaska E43 6319974 YP_001921452.1 CDS recQ NC_010723.1 2232543 2234981 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ complement(2232543..2234981) Clostridium botulinum E3 str. Alaska E43 6317495 YP_001921453.1 CDS CLH_2072 NC_010723.1 2235380 2236177 R identified by match to protein family HMM PF01183; lysozyme M1 complement(2235380..2236177) Clostridium botulinum E3 str. Alaska E43 6319577 YP_001921454.1 CDS CLH_2073 NC_010723.1 2236234 2236500 R hypothetical protein complement(2236234..2236500) Clostridium botulinum E3 str. Alaska E43 6319333 YP_001921455.1 CDS CLH_2074 NC_010723.1 2236543 2236794 R phage holin complement(2236543..2236794) Clostridium botulinum E3 str. Alaska E43 6320111 YP_001921456.1 CDS CLH_2075 NC_010723.1 2237012 2237179 R hypothetical protein complement(2237012..2237179) Clostridium botulinum E3 str. Alaska E43 6317850 YP_001921457.1 CDS CLH_2076 NC_010723.1 2237503 2238555 R identified by match to protein family HMM PF00188; hypothetical protein complement(2237503..2238555) Clostridium botulinum E3 str. Alaska E43 6319468 YP_001921458.1 CDS nifJ NC_010723.1 2238940 2242458 R identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase complement(2238940..2242458) Clostridium botulinum E3 str. Alaska E43 6317713 YP_001921459.1 CDS CLH_2078 NC_010723.1 2242870 2243277 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 2242870..2243277 Clostridium botulinum E3 str. Alaska E43 6319503 YP_001921460.1 CDS CLH_2079 NC_010723.1 2243330 2244466 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(2243330..2244466) Clostridium botulinum E3 str. Alaska E43 6317267 YP_001921461.1 CDS CLH_2080 NC_010723.1 2244517 2245773 R identified by match to protein family HMM PF02447; match to protein family HMM PF03600; GntP family permease complement(2244517..2245773) Clostridium botulinum E3 str. Alaska E43 6317514 YP_001921462.1 CDS CLH_2081 NC_010723.1 2245939 2247003 R identified by match to protein family HMM PF05651; sugar diacid utilization regulator complement(2245939..2247003) Clostridium botulinum E3 str. Alaska E43 6318806 YP_001921463.1 CDS CLH_2082 NC_010723.1 2247607 2247762 R hypothetical protein complement(2247607..2247762) Clostridium botulinum E3 str. Alaska E43 6319946 YP_001921464.1 CDS CLH_2083 NC_010723.1 2247940 2249226 R putative multidrug efflux pump, outer membrane protein complement(2247940..2249226) Clostridium botulinum E3 str. Alaska E43 6320173 YP_001921465.1 CDS CLH_2084 NC_010723.1 2249281 2250477 R putative ABC-2 type transporter complement(2249281..2250477) Clostridium botulinum E3 str. Alaska E43 6319424 YP_001921466.1 CDS CLH_2085 NC_010723.1 2250477 2251730 R hypothetical protein complement(2250477..2251730) Clostridium botulinum E3 str. Alaska E43 6318003 YP_001921467.1 CDS CLH_2086 NC_010723.1 2251741 2252799 R identified by match to protein family HMM PF00529; putative secretion protein HlyD family protein complement(2251741..2252799) Clostridium botulinum E3 str. Alaska E43 6317814 YP_001921468.1 CDS CLH_2087 NC_010723.1 2252827 2253312 R identified by match to protein family HMM PF01047; transcriptional regulator, MarR family complement(2252827..2253312) Clostridium botulinum E3 str. Alaska E43 6318168 YP_001921469.1 CDS CLH_2088 NC_010723.1 2253763 2254536 R identified by match to protein family HMM PF03883; hypothetical protein complement(2253763..2254536) Clostridium botulinum E3 str. Alaska E43 6320152 YP_001921470.1 CDS CLH_2089 NC_010723.1 2254814 2255803 D hypothetical protein 2254814..2255803 Clostridium botulinum E3 str. Alaska E43 6317351 YP_001921471.1 CDS CLH_2090 NC_010723.1 2255800 2257077 D identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein 2255800..2257077 Clostridium botulinum E3 str. Alaska E43 6318554 YP_001921472.1 CDS dacB NC_010723.1 2257152 2258021 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2257152..2258021) Clostridium botulinum E3 str. Alaska E43 6320246 YP_001921473.1 CDS CLH_2092 NC_010723.1 2258177 2258743 D hypothetical protein 2258177..2258743 Clostridium botulinum E3 str. Alaska E43 6319649 YP_001921474.1 CDS ytfJ NC_010723.1 2258733 2259215 D identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874; sporulation protein YtfJ 2258733..2259215 Clostridium botulinum E3 str. Alaska E43 6319959 YP_001921475.1 CDS scpB NC_010723.1 2259407 2260000 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(2259407..2260000) Clostridium botulinum E3 str. Alaska E43 6317650 YP_001921476.1 CDS scpA NC_010723.1 2259984 2260739 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(2259984..2260739) Clostridium botulinum E3 str. Alaska E43 6317712 YP_001921477.1 CDS CLH_2096 NC_010723.1 2260969 2262159 R identified by match to protein family HMM PF00768; match to protein family HMM PF07943; penicillin-binding protein DacF complement(2260969..2262159) Clostridium botulinum E3 str. Alaska E43 6317237 YP_001921478.1 CDS CLH_2097 NC_010723.1 2262897 2263979 R identified by match to protein family HMM PF00753; metallo beta-lactamase family protein complement(2262897..2263979) Clostridium botulinum E3 str. Alaska E43 6317766 YP_001921479.1 CDS CLH_2098 NC_010723.1 2264191 2264412 R identified by glimmer; putative; hypothetical protein complement(2264191..2264412) Clostridium botulinum E3 str. Alaska E43 6320295 YP_001921480.1 CDS CLH_2099 NC_010723.1 2264698 2265576 R identified by match to protein family HMM PF02086; DNA-methyltransferase complement(2264698..2265576) Clostridium botulinum E3 str. Alaska E43 6319833 YP_001921481.1 CDS CLH_2100 NC_010723.1 2265638 2267227 R hypothetical protein complement(2265638..2267227) Clostridium botulinum E3 str. Alaska E43 6318239 YP_001921482.1 CDS CLH_2101 NC_010723.1 2267480 2268154 R identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(2267480..2268154) Clostridium botulinum E3 str. Alaska E43 6317576 YP_001921483.1 CDS CLH_2102 NC_010723.1 2268216 2268632 R identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; toxin secretion/phage lysis holin complement(2268216..2268632) Clostridium botulinum E3 str. Alaska E43 6319441 YP_001921484.1 CDS CLH_2103 NC_010723.1 2268732 2268956 R identified by glimmer; putative; hypothetical protein complement(2268732..2268956) Clostridium botulinum E3 str. Alaska E43 6318398 YP_001921485.1 CDS CLH_2104 NC_010723.1 2269044 2269358 R identified by glimmer; putative; hypothetical protein complement(2269044..2269358) Clostridium botulinum E3 str. Alaska E43 6318876 YP_001921486.1 CDS CLH_2105 NC_010723.1 2269372 2270889 R identified by glimmer; putative; hypothetical protein complement(2269372..2270889) Clostridium botulinum E3 str. Alaska E43 6320249 YP_001921487.1 CDS CLH_2106 NC_010723.1 2270908 2272653 R identified by match to protein family HMM TIGR01665; putative phage endopeptidase complement(2270908..2272653) Clostridium botulinum E3 str. Alaska E43 6318962 YP_001921488.1 CDS CLH_2107 NC_010723.1 2272650 2273324 R identified by match to protein family HMM TIGR01633; putative phage tail component complement(2272650..2273324) Clostridium botulinum E3 str. Alaska E43 6318443 YP_001921489.1 CDS CLH_2108 NC_010723.1 2273340 2276810 R identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760; tail tape measure protein complement(2273340..2276810) Clostridium botulinum E3 str. Alaska E43 6319525 YP_001921490.1 CDS CLH_2109 NC_010723.1 2276860 2277123 R identified by glimmer; putative; hypothetical protein complement(2276860..2277123) Clostridium botulinum E3 str. Alaska E43 6318205 YP_001921491.1 CDS CLH_2110 NC_010723.1 2277126 2277449 R identified by glimmer; putative; hypothetical protein complement(2277126..2277449) Clostridium botulinum E3 str. Alaska E43 6317521 YP_001921492.1 CDS CLH_2111 NC_010723.1 2277452 2278033 R identified by glimmer; putative; hypothetical protein complement(2277452..2278033) Clostridium botulinum E3 str. Alaska E43 6319495 YP_001921493.1 CDS CLH_2112 NC_010723.1 2278036 2278356 R hypothetical protein complement(2278036..2278356) Clostridium botulinum E3 str. Alaska E43 6320503 YP_001921494.1 CDS CLH_2113 NC_010723.1 2278349 2278738 R hypothetical protein complement(2278349..2278738) Clostridium botulinum E3 str. Alaska E43 6319241 YP_001921495.1 CDS CLH_2114 NC_010723.1 2278738 2279073 R hypothetical protein complement(2278738..2279073) Clostridium botulinum E3 str. Alaska E43 6320402 YP_001921496.1 CDS CLH_2115 NC_010723.1 2279048 2279377 R Gp6 protein complement(2279048..2279377) Clostridium botulinum E3 str. Alaska E43 6317968 YP_001921497.1 CDS CLH_2116 NC_010723.1 2279392 2280588 R mAjor capsid protein a complement(2279392..2280588) Clostridium botulinum E3 str. Alaska E43 6317973 YP_001921498.1 CDS CLH_2117 NC_010723.1 2280588 2281379 R identified by match to protein family HMM PF00574; peptidase S14, ClpP complement(2280588..2281379) Clostridium botulinum E3 str. Alaska E43 6319336 YP_001921499.1 CDS CLH_2118 NC_010723.1 2281381 2282529 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family complement(2281381..2282529) Clostridium botulinum E3 str. Alaska E43 6320262 YP_001921500.1 CDS CLH_2119 NC_010723.1 2282578 2284233 R identified by match to protein family HMM PF03354; putative phage terminase, large subunit complement(2282578..2284233) Clostridium botulinum E3 str. Alaska E43 6319986 YP_001921501.1 CDS CLH_2120 NC_010723.1 2284214 2284768 R hypothetical protein complement(2284214..2284768) Clostridium botulinum E3 str. Alaska E43 6319753 YP_001921502.1 CDS CLH_2121 NC_010723.1 2284871 2285197 R identified by match to protein family HMM PF01844; Gp54 protein complement(2284871..2285197) Clostridium botulinum E3 str. Alaska E43 6318758 YP_001921503.1 CDS CLH_2122 NC_010723.1 2285185 2285502 R hypothetical protein complement(2285185..2285502) Clostridium botulinum E3 str. Alaska E43 6317849 YP_001921504.1 CDS CLH_2123 NC_010723.1 2285656 2286198 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(2285656..2286198) Clostridium botulinum E3 str. Alaska E43 6320210 YP_001921505.1 CDS CLH_2124 NC_010723.1 2286195 2286431 R hypothetical protein complement(2286195..2286431) Clostridium botulinum E3 str. Alaska E43 6320491 YP_001921506.1 CDS CLH_2125 NC_010723.1 2286475 2286615 R identified by glimmer; putative; hypothetical protein complement(2286475..2286615) Clostridium botulinum E3 str. Alaska E43 6319238 YP_001921507.1 CDS CLH_2126 NC_010723.1 2286609 2286998 R identified by glimmer; putative; hypothetical protein complement(2286609..2286998) Clostridium botulinum E3 str. Alaska E43 6319582 YP_001921508.1 CDS CLH_2127 NC_010723.1 2287923 2288141 R identified by glimmer; putative; hypothetical protein complement(2287923..2288141) Clostridium botulinum E3 str. Alaska E43 6319749 YP_001921509.1 CDS CLH_2128 NC_010723.1 2288167 2288352 R identified by glimmer; putative; hypothetical protein complement(2288167..2288352) Clostridium botulinum E3 str. Alaska E43 6320036 YP_001921510.1 CDS CLH_2129 NC_010723.1 2288372 2288584 R identified by glimmer; putative; hypothetical protein complement(2288372..2288584) Clostridium botulinum E3 str. Alaska E43 6318145 YP_001921511.1 CDS CLH_2130 NC_010723.1 2288715 2288981 R identified by glimmer; putative; hypothetical protein complement(2288715..2288981) Clostridium botulinum E3 str. Alaska E43 6318248 YP_001921512.1 CDS CLH_2131 NC_010723.1 2289006 2289161 R identified by glimmer; putative; hypothetical protein complement(2289006..2289161) Clostridium botulinum E3 str. Alaska E43 6320423 YP_001921513.1 CDS CLH_2132 NC_010723.1 2289167 2289280 R identified by glimmer; putative; hypothetical protein complement(2289167..2289280) Clostridium botulinum E3 str. Alaska E43 6319201 YP_001921514.1 CDS CLH_2133 NC_010723.1 2289342 2290208 R phage protein complement(2289342..2290208) Clostridium botulinum E3 str. Alaska E43 6319476 YP_001921515.1 CDS CLH_2134 NC_010723.1 2290324 2291475 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB protein complement(2290324..2291475) Clostridium botulinum E3 str. Alaska E43 6319553 YP_001921516.1 CDS soj NC_010723.1 2291460 2292215 R identified by match to protein family HMM PF01656; SpoOJ regulator protein complement(2291460..2292215) Clostridium botulinum E3 str. Alaska E43 6318516 YP_001921517.1 CDS CLH_2136 NC_010723.1 2292306 2292449 R identified by glimmer; putative; hypothetical protein complement(2292306..2292449) Clostridium botulinum E3 str. Alaska E43 6319498 YP_001921518.1 CDS CLH_2137 NC_010723.1 2292437 2292685 R identified by match to protein family HMM TIGR01764; excisionase family DNA binding domain complement(2292437..2292685) Clostridium botulinum E3 str. Alaska E43 6317992 YP_001921519.1 CDS CLH_2138 NC_010723.1 2292698 2293129 R putative prophage LambdaCh01, transcriptional regulator complement(2292698..2293129) Clostridium botulinum E3 str. Alaska E43 6320315 YP_001921520.1 CDS CLH_2139 NC_010723.1 2293099 2293212 R identified by glimmer; putative; hypothetical protein complement(2293099..2293212) Clostridium botulinum E3 str. Alaska E43 6318249 YP_001921521.1 CDS CLH_2140 NC_010723.1 2293266 2293460 R identified by match to protein family HMM PF01381; hypothetical protein complement(2293266..2293460) Clostridium botulinum E3 str. Alaska E43 6317375 YP_001921522.1 CDS CLH_2141 NC_010723.1 2293596 2293940 D identified by match to protein family HMM PF01381; DNA-binding protein 2293596..2293940 Clostridium botulinum E3 str. Alaska E43 6318994 YP_001921523.1 CDS CLH_2142 NC_010723.1 2293966 2295045 R identified by match to protein family HMM PF00753; metallo beta-lactamase family protein complement(2293966..2295045) Clostridium botulinum E3 str. Alaska E43 6318373 YP_001921524.1 CDS CLH_2143 NC_010723.1 2295201 2295689 R identified by match to protein family HMM PF01473; cell wall binding domain-containing protein complement(2295201..2295689) Clostridium botulinum E3 str. Alaska E43 6318647 YP_001921525.1 CDS CLH_2144 NC_010723.1 2296026 2297078 D hypothetical protein 2296026..2297078 Clostridium botulinum E3 str. Alaska E43 6319031 YP_001921526.1 CDS CLH_2145 NC_010723.1 2297154 2297486 D identified by match to protein family HMM PF07060; ProFAR isomerase associated superfamily 2297154..2297486 Clostridium botulinum E3 str. Alaska E43 6317562 YP_001921527.1 CDS CLH_2146 NC_010723.1 2297513 2298052 R hypothetical protein complement(2297513..2298052) Clostridium botulinum E3 str. Alaska E43 6319790 YP_001921528.1 CDS CLH_2147 NC_010723.1 2298063 2298440 R hypothetical protein complement(2298063..2298440) Clostridium botulinum E3 str. Alaska E43 6317253 YP_001921529.1 CDS CLH_2148 NC_010723.1 2298649 2299146 D identified by match to protein family HMM PF06114; hypothetical protein 2298649..2299146 Clostridium botulinum E3 str. Alaska E43 6319053 YP_001921530.1 CDS CLH_2149 NC_010723.1 2299251 2300399 D identified by match to protein family HMM PF00589; phage integrase family protein 2299251..2300399 Clostridium botulinum E3 str. Alaska E43 6319895 YP_001921531.1 CDS CLH_2150 NC_010723.1 2300481 2301359 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD complement(2300481..2301359) Clostridium botulinum E3 str. Alaska E43 6320298 YP_001921532.1 CDS spoIIM NC_010723.1 2301480 2302112 R identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831; stage II sporulation protein M complement(2301480..2302112) Clostridium botulinum E3 str. Alaska E43 6320398 YP_001921533.1 CDS CLH_2152 NC_010723.1 2302313 2303884 R converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase complement(2302313..2303884) Clostridium botulinum E3 str. Alaska E43 6318087 YP_001921534.1 CDS CLH_2153 NC_010723.1 2303993 2304415 R identified by glimmer; putative; hypothetical protein complement(2303993..2304415) Clostridium botulinum E3 str. Alaska E43 6318442 YP_001921535.1 CDS CLH_2154 NC_010723.1 2304698 2305240 D identified by glimmer; putative; hypothetical protein 2304698..2305240 Clostridium botulinum E3 str. Alaska E43 6317813 YP_001921536.1 CDS CLH_2155 NC_010723.1 2305617 2306087 D identified by glimmer; putative; hypothetical protein 2305617..2306087 Clostridium botulinum E3 str. Alaska E43 6318641 YP_001921537.1 CDS CLH_2156 NC_010723.1 2306133 2306681 R hypothetical protein complement(2306133..2306681) Clostridium botulinum E3 str. Alaska E43 6319628 YP_001921538.1 CDS CLH_2157 NC_010723.1 2306782 2307417 R hypothetical protein complement(2306782..2307417) Clostridium botulinum E3 str. Alaska E43 6319166 YP_001921539.1 CDS CLH_2158 NC_010723.1 2307605 2307781 R identified by glimmer; putative; hypothetical protein complement(2307605..2307781) Clostridium botulinum E3 str. Alaska E43 6319598 YP_001921540.1 CDS CLH_2159 NC_010723.1 2308512 2308859 D hypothetical protein 2308512..2308859 Clostridium botulinum E3 str. Alaska E43 6320163 YP_001921541.1 CDS spo0A NC_010723.1 2309147 2309965 R identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875; sporulation transcription factor Spo0A complement(2309147..2309965) Clostridium botulinum E3 str. Alaska E43 6319507 YP_001921542.1 CDS spoIVB NC_010723.1 2310352 2311542 R identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860; stage IV sporulation protein B complement(2310352..2311542) Clostridium botulinum E3 str. Alaska E43 6320245 YP_001921543.1 CDS recN NC_010723.1 2311835 2313523 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(2311835..2313523) Clostridium botulinum E3 str. Alaska E43 6319766 YP_001921544.1 CDS argR NC_010723.1 2313550 2314002 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(2313550..2314002) Clostridium botulinum E3 str. Alaska E43 6318139 YP_001921545.1 CDS CLH_2164 NC_010723.1 2313999 2314853 R identified by match to protein family HMM PF01513; inorganic polyphosphate/ATP-NAD kinase complement(2313999..2314853) Clostridium botulinum E3 str. Alaska E43 6320180 YP_001921546.1 CDS CLH_2165 NC_010723.1 2314871 2315680 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(2314871..2315680) Clostridium botulinum E3 str. Alaska E43 6317784 YP_001921547.1 CDS dxs NC_010723.1 2315697 2317556 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(2315697..2317556) Clostridium botulinum E3 str. Alaska E43 6318682 YP_001921548.1 CDS CLH_2167 NC_010723.1 2317574 2318443 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(2317574..2318443) Clostridium botulinum E3 str. Alaska E43 6319835 YP_001921549.1 CDS CLH_2168 NC_010723.1 2318430 2318654 R hypothetical protein complement(2318430..2318654) Clostridium botulinum E3 str. Alaska E43 6320256 YP_001921550.1 CDS xseA NC_010723.1 2318667 2319866 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2318667..2319866) Clostridium botulinum E3 str. Alaska E43 6320404 YP_001921551.1 CDS CLH_2170 NC_010723.1 2319856 2320704 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2319856..2320704) Clostridium botulinum E3 str. Alaska E43 6317426 YP_001921552.1 CDS nusB NC_010723.1 2320727 2321128 R identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB complement(2320727..2321128) Clostridium botulinum E3 str. Alaska E43 6317269 YP_001921553.1 CDS CLH_2172 NC_010723.1 2321247 2321627 R identified by match to protein family HMM PF03780; alkaline shock protein complement(2321247..2321627) Clostridium botulinum E3 str. Alaska E43 6317925 YP_001921554.1 CDS CLH_2173 NC_010723.1 2321744 2322289 R stage III sporulation protein AH complement(2321744..2322289) Clostridium botulinum E3 str. Alaska E43 6318479 YP_001921555.1 CDS spoIIIAG NC_010723.1 2322330 2322959 R identified by match to protein family HMM TIGR02830; stage III sporulation protein AG complement(2322330..2322959) Clostridium botulinum E3 str. Alaska E43 6318779 YP_001921556.1 CDS CLH_2175 NC_010723.1 2322971 2323558 R identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896; stage III sporulation protein af, spoiiiaf complement(2322971..2323558) Clostridium botulinum E3 str. Alaska E43 6317751 YP_001921557.1 CDS spoIIIAE NC_010723.1 2323562 2324818 R identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829; stage III sporulation protein AE complement(2323562..2324818) Clostridium botulinum E3 str. Alaska E43 6317324 YP_001921558.1 CDS spoIIIAD NC_010723.1 2324830 2325213 R identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849; stage III sporulation protein AD complement(2324830..2325213) Clostridium botulinum E3 str. Alaska E43 6318113 YP_001921559.1 CDS spoIIIAC NC_010723.1 2325222 2325419 R identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848; stage III sporulation protein AC complement(2325222..2325419) Clostridium botulinum E3 str. Alaska E43 6317732 YP_001921560.1 CDS spoIIIAB NC_010723.1 2325434 2325952 R necessary for complete engulfment of forespore; stage III sporulation protein SpoAB complement(2325434..2325952) Clostridium botulinum E3 str. Alaska E43 6318227 YP_001921561.1 CDS spoIIIAA NC_010723.1 2325940 2326860 R identified by match to protein family HMM TIGR02858; stage III sporulation protein AA complement(2325940..2326860) Clostridium botulinum E3 str. Alaska E43 6318052 YP_001921562.1 CDS CLH_2181 NC_010723.1 2327024 2327389 R hypothetical protein complement(2327024..2327389) Clostridium botulinum E3 str. Alaska E43 6319064 YP_001921563.1 CDS efp NC_010723.1 2327476 2328033 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2327476..2328033) Clostridium botulinum E3 str. Alaska E43 6319604 YP_001921564.1 CDS CLH_2183 NC_010723.1 2328224 2328604 R putative lipoprotein complement(2328224..2328604) Clostridium botulinum E3 str. Alaska E43 6318343 YP_001921565.1 CDS CLH_2184 NC_010723.1 2328591 2329019 R identified by glimmer; putative; hypothetical protein complement(2328591..2329019) Clostridium botulinum E3 str. Alaska E43 6317931 YP_001921566.1 CDS CLH_2185 NC_010723.1 2328970 2329671 R hypothetical protein complement(2328970..2329671) Clostridium botulinum E3 str. Alaska E43 6319475 YP_001921567.1 CDS CLH_2186 NC_010723.1 2329769 2330161 R identified by glimmer; putative; hypothetical protein complement(2329769..2330161) Clostridium botulinum E3 str. Alaska E43 6318697 YP_001921568.1 CDS CLH_2187 NC_010723.1 2330152 2330436 R hypothetical protein complement(2330152..2330436) Clostridium botulinum E3 str. Alaska E43 6319118 YP_001921569.1 CDS CLH_2188 NC_010723.1 2330618 2331046 R hypothetical protein complement(2330618..2331046) Clostridium botulinum E3 str. Alaska E43 6320199 YP_001921570.1 CDS CLH_2189 NC_010723.1 2331077 2331514 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N- cleavage/methylation domain-containing protein complement(2331077..2331514) Clostridium botulinum E3 str. Alaska E43 6319091 YP_001921571.1 CDS CLH_2190 NC_010723.1 2331511 2332587 R identified by match to protein family HMM PF00482; type II secretion system protein F domain complement(2331511..2332587) Clostridium botulinum E3 str. Alaska E43 6318937 YP_001921572.1 CDS CLH_2191 NC_010723.1 2332574 2333815 R identified by match to protein family HMM PF00437; general secretion pathway protein complement(2332574..2333815) Clostridium botulinum E3 str. Alaska E43 6319028 YP_001921573.1 CDS CLH_2192 NC_010723.1 2334045 2335049 R putative lipoprotein complement(2334045..2335049) Clostridium botulinum E3 str. Alaska E43 6320400 YP_001921574.1 CDS dapF NC_010723.1 2335076 2335897 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(2335076..2335897) Clostridium botulinum E3 str. Alaska E43 6318739 YP_001921575.1 CDS CLH_2194 NC_010723.1 2336160 2337893 D identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 2336160..2337893 Clostridium botulinum E3 str. Alaska E43 6318475 YP_001921576.1 CDS CLH_2195 NC_010723.1 2338353 2339513 R identified by match to protein family HMM PF01170; methyltransferase complement(2338353..2339513) Clostridium botulinum E3 str. Alaska E43 6319191 YP_001921577.1 CDS CLH_2196 NC_010723.1 2339547 2340089 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(2339547..2340089) Clostridium botulinum E3 str. Alaska E43 6320053 YP_001921578.1 CDS CLH_2197 NC_010723.1 2340116 2341024 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D complement(2340116..2341024) Clostridium botulinum E3 str. Alaska E43 6319607 YP_001921579.1 CDS CLH_2198 NC_010723.1 2341301 2341921 R identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544; minicell-associated protein complement(2341301..2341921) Clostridium botulinum E3 str. Alaska E43 6318223 YP_001921580.1 CDS CLH_2199 NC_010723.1 2341935 2342699 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(2341935..2342699) Clostridium botulinum E3 str. Alaska E43 6317447 YP_001921581.1 CDS CLH_2200 NC_010723.1 2342702 2342968 R identified by match to protein family HMM PF02325; yggt family protein complement(2342702..2342968) Clostridium botulinum E3 str. Alaska E43 6317717 YP_001921582.1 CDS CLH_2201 NC_010723.1 2342977 2343438 R identified by match to protein family HMM PF04472; hypothetical protein complement(2342977..2343438) Clostridium botulinum E3 str. Alaska E43 6318263 YP_001921583.1 CDS CLH_2202 NC_010723.1 2343438 2344112 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; pyridoxal phosphate enzyme, YggS family complement(2343438..2344112) Clostridium botulinum E3 str. Alaska E43 6320364 YP_001921584.1 CDS CLH_2203 NC_010723.1 2344215 2344946 R identified by match to protein family HMM PF05949; hypothetical protein complement(2344215..2344946) Clostridium botulinum E3 str. Alaska E43 6318374 YP_001921585.1 CDS CLH_2204 NC_010723.1 2344960 2345298 R identified by match to protein family HMM PF06947; small basic protein complement(2344960..2345298) Clostridium botulinum E3 str. Alaska E43 6318621 YP_001921586.1 CDS CLH_2205 NC_010723.1 2345319 2346047 R identified by match to protein family HMM PF05949; division initiation protein complement(2345319..2346047) Clostridium botulinum E3 str. Alaska E43 6319361 YP_001921587.1 CDS CLH_2206 NC_010723.1 2346063 2346728 R identified by match to protein family HMM PF08478; cell division protein FtsQ complement(2346063..2346728) Clostridium botulinum E3 str. Alaska E43 6317547 YP_001921588.1 CDS ftsW NC_010723.1 2347120 2348244 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615; cell division protein FtsW complement(2347120..2348244) Clostridium botulinum E3 str. Alaska E43 6318421 YP_001921589.1 CDS mraY NC_010723.1 2348386 2349360 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2348386..2349360) Clostridium botulinum E3 str. Alaska E43 6318800 YP_001921590.1 CDS CLH_2209 NC_010723.1 2349401 2350762 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2349401..2350762) Clostridium botulinum E3 str. Alaska E43 6319307 YP_001921591.1 CDS murE NC_010723.1 2350782 2352236 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2350782..2352236) Clostridium botulinum E3 str. Alaska E43 6319197 YP_001921592.1 CDS CLH_2211 NC_010723.1 2352361 2354619 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D complement(2352361..2354619) Clostridium botulinum E3 str. Alaska E43 6318664 YP_001921593.1 CDS CLH_2212 NC_010723.1 2354773 2355276 R putative cell division protein FtsL complement(2354773..2355276) Clostridium botulinum E3 str. Alaska E43 6320431 YP_001921594.1 CDS mraW NC_010723.1 2355324 2356256 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(2355324..2356256) Clostridium botulinum E3 str. Alaska E43 6318038 YP_001921595.1 CDS mraZ NC_010723.1 2356269 2356697 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2356269..2356697) Clostridium botulinum E3 str. Alaska E43 6319088 YP_001921596.1 CDS CLH_2215 NC_010723.1 2356867 2357148 R identified by glimmer; putative; hypothetical protein complement(2356867..2357148) Clostridium botulinum E3 str. Alaska E43 6318133 YP_001921597.1 CDS CLH_2216 NC_010723.1 2357344 2358090 D identified by match to protein family HMM PF03591; AzlC family protein 2357344..2358090 Clostridium botulinum E3 str. Alaska E43 6317952 YP_001921598.1 CDS CLH_2217 NC_010723.1 2358091 2358390 D identified by match to protein family HMM PF05437; branched-chain amino acid transport 2358091..2358390 Clostridium botulinum E3 str. Alaska E43 6319882 YP_001921599.1 CDS CLH_2218 NC_010723.1 2358570 2358698 R identified by glimmer; putative; hypothetical protein complement(2358570..2358698) Clostridium botulinum E3 str. Alaska E43 6319407 YP_001921600.1 CDS CLH_2219 NC_010723.1 2358670 2359506 R identified by match to protein family HMM PF03741; integral membrane protein TerC complement(2358670..2359506) Clostridium botulinum E3 str. Alaska E43 6317490 YP_001921601.1 CDS CLH_2220 NC_010723.1 2359658 2360755 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2359658..2360755) Clostridium botulinum E3 str. Alaska E43 6319685 YP_001921602.1 CDS pdaA NC_010723.1 2361175 2362044 D identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884; delta-lactam-biosynthetic de-N-acetylase 2361175..2362044 Clostridium botulinum E3 str. Alaska E43 6320362 YP_001921603.1 CDS CLH_2222 NC_010723.1 2362402 2363052 R identified by match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase complement(2362402..2363052) Clostridium botulinum E3 str. Alaska E43 6320099 YP_001921604.1 CDS CLH_2223 NC_010723.1 2363065 2363997 R identified by match to protein family HMM PF04932; O-antigen polymerase family complement(2363065..2363997) Clostridium botulinum E3 str. Alaska E43 6319578 YP_001921605.1 CDS CLH_2224 NC_010723.1 2364284 2365447 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(2364284..2365447) Clostridium botulinum E3 str. Alaska E43 6319757 YP_001921606.1 CDS CLH_2225 NC_010723.1 2365453 2366736 R hypothetical protein complement(2365453..2366736) Clostridium botulinum E3 str. Alaska E43 6319299 YP_001921607.1 CDS mviN NC_010723.1 2366748 2368280 R identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(2366748..2368280) Clostridium botulinum E3 str. Alaska E43 6320535 YP_001921608.1 CDS CLH_2227 NC_010723.1 2368286 2368999 R identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; putative N-acetylmannosaminyltransferase complement(2368286..2368999) Clostridium botulinum E3 str. Alaska E43 6318583 YP_001921609.1 CDS CLH_2228 NC_010723.1 2369358 2370446 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR domain-containing protein complement(2369358..2370446) Clostridium botulinum E3 str. Alaska E43 6319325 YP_001921610.1 CDS CLH_2229 NC_010723.1 2370545 2372272 R identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase complement(2370545..2372272) Clostridium botulinum E3 str. Alaska E43 6318650 YP_001921611.1 CDS CLH_2230 NC_010723.1 2372436 2373170 R identified by match to protein family HMM PF04463; purine nucleoside phosphorylase complement(2372436..2373170) Clostridium botulinum E3 str. Alaska E43 6318915 YP_001921612.1 CDS CLH_2231 NC_010723.1 2373298 2375655 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(2373298..2375655) Clostridium botulinum E3 str. Alaska E43 6317335 YP_001921613.1 CDS CLH_2232 NC_010723.1 2375669 2378014 R identified by match to protein family HMM PF01136; peptidase, U32 family complement(2375669..2378014) Clostridium botulinum E3 str. Alaska E43 6319411 YP_001921614.1 CDS CLH_2233 NC_010723.1 2378169 2379776 R identified by match to protein family HMM PF05164; hypothetical protein complement(2378169..2379776) Clostridium botulinum E3 str. Alaska E43 6319565 YP_001921615.1 CDS CLH_2234 NC_010723.1 2380089 2380235 R identified by glimmer; putative; hypothetical protein complement(2380089..2380235) Clostridium botulinum E3 str. Alaska E43 6318246 YP_001921616.1 CDS CLH_2235 NC_010723.1 2380535 2381785 D identified by match to protein family HMM PF07690; major facilitator superfamily permease 2380535..2381785 Clostridium botulinum E3 str. Alaska E43 6320000 YP_001921617.1 CDS CLH_2236 NC_010723.1 2382075 2382635 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2382075..2382635) Clostridium botulinum E3 str. Alaska E43 6320286 YP_001921618.1 CDS CLH_2237 NC_010723.1 2383357 2385057 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor complement(2383357..2385057) Clostridium botulinum E3 str. Alaska E43 6319322 YP_001921619.1 CDS CLH_2238 NC_010723.1 2385410 2386357 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(2385410..2386357) Clostridium botulinum E3 str. Alaska E43 6318275 YP_001921620.1 CDS CLH_2239 NC_010723.1 2386721 2387536 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(2386721..2387536) Clostridium botulinum E3 str. Alaska E43 6319988 YP_001921621.1 CDS CLH_2240 NC_010723.1 2387644 2388561 R identified by match to protein family HMM PF02016; muramoyltetrapeptide carboxypeptidase complement(2387644..2388561) Clostridium botulinum E3 str. Alaska E43 6318256 YP_001921622.1 CDS pheT NC_010723.1 2388804 2391179 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2388804..2391179) Clostridium botulinum E3 str. Alaska E43 6319610 YP_001921623.1 CDS pheS NC_010723.1 2391299 2392318 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2391299..2392318) Clostridium botulinum E3 str. Alaska E43 6319885 YP_001921624.1 CDS hppA NC_010723.1 2392846 2394987 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(2392846..2394987) Clostridium botulinum E3 str. Alaska E43 6319520 YP_001921625.1 CDS CLH_2244 NC_010723.1 2395223 2396011 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase, TrmH family complement(2395223..2396011) Clostridium botulinum E3 str. Alaska E43 6319315 YP_001921626.1 CDS CLH_2245 NC_010723.1 2396026 2396694 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein complement(2396026..2396694) Clostridium botulinum E3 str. Alaska E43 6319849 YP_001921627.1 CDS CLH_2246 NC_010723.1 2396708 2398057 R identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein complement(2396708..2398057) Clostridium botulinum E3 str. Alaska E43 6318393 YP_001921628.1 CDS rplT NC_010723.1 2398199 2398558 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2398199..2398558) Clostridium botulinum E3 str. Alaska E43 6317993 YP_001921629.1 CDS rpmI NC_010723.1 2398587 2398784 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(2398587..2398784) Clostridium botulinum E3 str. Alaska E43 6318045 YP_001921630.1 CDS infC NC_010723.1 2398806 2399327 R identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 complement(2398806..2399327) Clostridium botulinum E3 str. Alaska E43 6319518 YP_001921631.1 CDS CLH_2250 NC_010723.1 2399484 2400392 R identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834; putative sporulation protein YtxC complement(2399484..2400392) Clostridium botulinum E3 str. Alaska E43 6319569 YP_001921632.1 CDS CLH_2251 NC_010723.1 2400545 2401249 D hypothetical protein 2400545..2401249 Clostridium botulinum E3 str. Alaska E43 6320587 YP_001921633.1 CDS hslO NC_010723.1 2401520 2402407 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(2401520..2402407) Clostridium botulinum E3 str. Alaska E43 6318910 YP_001921634.1 CDS CLH_2253 NC_010723.1 2402425 2403162 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; S-adenosylmethionine-dependent methyltransferase complement(2402425..2403162) Clostridium botulinum E3 str. Alaska E43 6320525 YP_001921635.1 CDS CLH_2254 NC_010723.1 2403447 2403716 R small, acid-soluble spore protein, alpha/beta family complement(2403447..2403716) Clostridium botulinum E3 str. Alaska E43 6319883 YP_001921636.1 CDS asd NC_010723.1 2403990 2404982 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 2403990..2404982 Clostridium botulinum E3 str. Alaska E43 6319075 YP_001921637.1 CDS dapA NC_010723.1 2404999 2405877 D identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase 2404999..2405877 Clostridium botulinum E3 str. Alaska E43 6320225 YP_001921638.1 CDS dapB NC_010723.1 2405887 2406645 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2405887..2406645 Clostridium botulinum E3 str. Alaska E43 6317512 YP_001921639.1 CDS CLH_2258 NC_010723.1 2406710 2408359 R identified by match to protein family HMM PF00496; oligopeptide-binding protein OppA complement(2406710..2408359) Clostridium botulinum E3 str. Alaska E43 6317910 YP_001921640.1 CDS CLH_2259 NC_010723.1 2408551 2409531 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppF complement(2408551..2409531) Clostridium botulinum E3 str. Alaska E43 6318449 YP_001921641.1 CDS CLH_2260 NC_010723.1 2409531 2410541 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein OppD complement(2409531..2410541) Clostridium botulinum E3 str. Alaska E43 6320481 YP_001921642.1 CDS CLH_2261 NC_010723.1 2410554 2411498 R identified by match to protein family HMM PF00528; oligopeptide transport system permease OppC complement(2410554..2411498) Clostridium botulinum E3 str. Alaska E43 6319587 YP_001921643.1 CDS CLH_2262 NC_010723.1 2411517 2412443 R identified by match to protein family HMM PF00528; oligopeptide transport system permease OppB complement(2411517..2412443) Clostridium botulinum E3 str. Alaska E43 6318754 YP_001921644.1 CDS oppA NC_010723.1 2412988 2414658 R identified by match to protein family HMM PF00496; oligopeptide ABC transporter periplasmic oligopeptide-binding protein complement(2412988..2414658) Clostridium botulinum E3 str. Alaska E43 6317681 YP_001921645.1 CDS CLH_2264 NC_010723.1 2415176 2416315 R identified by match to protein family HMM PF00155; putative aminotransferase A complement(2415176..2416315) Clostridium botulinum E3 str. Alaska E43 6319359 YP_001921646.1 CDS dapD NC_010723.1 2416537 2417247 D identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2416537..2417247 Clostridium botulinum E3 str. Alaska E43 6319332 YP_001921647.1 CDS CLH_2266 NC_010723.1 2417385 2418035 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2417385..2418035) Clostridium botulinum E3 str. Alaska E43 6319159 YP_001921648.1 CDS CLH_2267 NC_010723.1 2418134 2418895 R identified by match to protein family HMM PF01522; chitooligosaccharide deacetylase complement(2418134..2418895) Clostridium botulinum E3 str. Alaska E43 6317904 YP_001921649.1 CDS CLH_2269 NC_010723.1 2419023 2419556 D hypothetical protein 2419023..2419556 Clostridium botulinum E3 str. Alaska E43 6318963 YP_001921650.1 CDS CLH_2268 NC_010723.1 2419540 2420433 R hypothetical protein complement(2419540..2420433) Clostridium botulinum E3 str. Alaska E43 6317737 YP_001921651.1 CDS CLH_2270 NC_010723.1 2420599 2420847 D hypothetical protein 2420599..2420847 Clostridium botulinum E3 str. Alaska E43 6319345 YP_001921652.1 CDS CLH_2271 NC_010723.1 2420889 2422859 R identified by match to protein family HMM PF08797; hiran domain family complement(2420889..2422859) Clostridium botulinum E3 str. Alaska E43 6319855 YP_001921653.1 CDS CLH_2272 NC_010723.1 2422906 2424219 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthase complement(2422906..2424219) Clostridium botulinum E3 str. Alaska E43 6317884 YP_001921654.1 CDS CLH_2273 NC_010723.1 2424341 2424661 R identified by match to protein family HMM PF01906; hypothetical protein complement(2424341..2424661) Clostridium botulinum E3 str. Alaska E43 6319337 YP_001921655.1 CDS valS NC_010723.1 2425176 2427818 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2425176..2427818) Clostridium botulinum E3 str. Alaska E43 6317396 YP_001921656.1 CDS CLH_2275 NC_010723.1 2428373 2429233 R identified by match to protein family HMM PF02016; LD-carboxypeptidase family protein complement(2428373..2429233) Clostridium botulinum E3 str. Alaska E43 6317290 YP_001921657.1 CDS CLH_2276 NC_010723.1 2429773 2430744 D identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase 2429773..2430744 Clostridium botulinum E3 str. Alaska E43 6317701 YP_001921658.1 CDS CLH_2277 NC_010723.1 2430754 2431158 D identified by match to protein family HMM PF04138; hypothetical protein 2430754..2431158 Clostridium botulinum E3 str. Alaska E43 6319193 YP_001921659.1 CDS CLH_2278 NC_010723.1 2431356 2432519 R identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase a complement(2431356..2432519) Clostridium botulinum E3 str. Alaska E43 6319918 YP_001921660.1 CDS CLH_2279 NC_010723.1 2432750 2433430 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase F complement(2432750..2433430) Clostridium botulinum E3 str. Alaska E43 6319453 YP_001921661.1 CDS CLH_2280 NC_010723.1 2433524 2436721 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495; sensor histidine kinase/response regulator complement(2433524..2436721) Clostridium botulinum E3 str. Alaska E43 6317960 YP_001921662.1 CDS uvsE NC_010723.1 2437027 2437989 R identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629; putative UV damage endonuclease complement(2437027..2437989) Clostridium botulinum E3 str. Alaska E43 6320032 YP_001921663.1 CDS CLH_2282 NC_010723.1 2438222 2439106 R identified by match to protein family HMM TIGR01451; hypothetical protein complement(2438222..2439106) Clostridium botulinum E3 str. Alaska E43 6320566 YP_001921664.1 CDS CLH_2283 NC_010723.1 2439136 2439615 R hypothetical protein complement(2439136..2439615) Clostridium botulinum E3 str. Alaska E43 6319995 YP_001921665.1 CDS CLH_2284 NC_010723.1 2439767 2447866 R identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451; hypothetical protein complement(2439767..2447866) Clostridium botulinum E3 str. Alaska E43 6317355 YP_001921666.1 CDS CLH_2285 NC_010723.1 2448090 2451509 D identified by match to protein family HMM TIGR01451; hypothetical protein 2448090..2451509 Clostridium botulinum E3 str. Alaska E43 6320416 YP_001921667.1 CDS CLH_2286 NC_010723.1 2451752 2452363 R identified by glimmer; putative; hypothetical protein complement(2451752..2452363) Clostridium botulinum E3 str. Alaska E43 6318072 YP_001921668.1 CDS CLH_2287 NC_010723.1 2452516 2453877 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(2452516..2453877) Clostridium botulinum E3 str. Alaska E43 6318433 YP_001921669.1 CDS CLH_2288 NC_010723.1 2454050 2454502 D identified by glimmer; putative; hypothetical protein 2454050..2454502 Clostridium botulinum E3 str. Alaska E43 6317376 YP_001921670.1 CDS CLH_2289 NC_010723.1 2454715 2454849 R hypothetical protein complement(2454715..2454849) Clostridium botulinum E3 str. Alaska E43 6318878 YP_001921671.1 CDS CLH_2290 NC_010723.1 2454900 2455046 R hypothetical protein complement(2454900..2455046) Clostridium botulinum E3 str. Alaska E43 6318622 YP_001921672.1 CDS CLH_2291 NC_010723.1 2455133 2456176 R D-galactose-binding periplasmic protein complement(2455133..2456176) Clostridium botulinum E3 str. Alaska E43 6319616 YP_001921673.1 CDS CLH_2292 NC_010723.1 2456429 2456851 R identified by glimmer; putative; hypothetical protein complement(2456429..2456851) Clostridium botulinum E3 str. Alaska E43 6317729 YP_001921674.1 CDS CLH_2293 NC_010723.1 2457001 2461305 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase domain-containing protein complement(2457001..2461305) Clostridium botulinum E3 str. Alaska E43 6318121 YP_001921675.1 CDS CLH_2294 NC_010723.1 2461503 2461856 D identified by match to protein family HMM PF00515; tetratricopeptide repeat protein 2461503..2461856 Clostridium botulinum E3 str. Alaska E43 6320196 YP_001921676.1 CDS CLH_2295 NC_010723.1 2461906 2462970 R identified by match to protein family HMM PF01841; transglutaminase domain protein complement(2461906..2462970) Clostridium botulinum E3 str. Alaska E43 6318512 YP_001921677.1 CDS recX NC_010723.1 2462983 2463621 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2462983..2463621) Clostridium botulinum E3 str. Alaska E43 6319653 YP_001921678.1 CDS CLH_2297 NC_010723.1 2463721 2464962 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family complement(2463721..2464962) Clostridium botulinum E3 str. Alaska E43 6317485 YP_001921679.1 CDS CLH_2298 NC_010723.1 2465168 2465839 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein ResD 2465168..2465839 Clostridium botulinum E3 str. Alaska E43 6318597 YP_001921680.1 CDS CLH_2299 NC_010723.1 2465839 2467347 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01563; two-component sensor histidine kinase 2465839..2467347 Clostridium botulinum E3 str. Alaska E43 6320430 YP_001921681.1 CDS fbp NC_010723.1 2467374 2469353 R identified by match to protein family HMM PF06874; fructose-1,6-bisphosphatase complement(2467374..2469353) Clostridium botulinum E3 str. Alaska E43 6317362 YP_001921682.1 CDS gidA NC_010723.1 2469736 2470596 R identified by match to protein family HMM PF01134; match to protein family HMM PF07992; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2469736..2470596) Clostridium botulinum E3 str. Alaska E43 6318132 YP_001921683.1 CDS trx NC_010723.1 2470614 2470928 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(2470614..2470928) Clostridium botulinum E3 str. Alaska E43 6318720 YP_001921684.1 CDS CLH_2303 NC_010723.1 2471572 2472132 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 2471572..2472132 Clostridium botulinum E3 str. Alaska E43 6319125 YP_001921685.1 CDS CLH_2304 NC_010723.1 2472224 2473930 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; lipid A export ATP-binding/permease protein MsbA complement(2472224..2473930) Clostridium botulinum E3 str. Alaska E43 6318774 YP_001921686.1 CDS CLH_2305 NC_010723.1 2473964 2474635 R identified by match to protein family HMM PF00005; aliphatic sulfonates import ATP-binding protein SsuB complement(2473964..2474635) Clostridium botulinum E3 str. Alaska E43 6317750 YP_001921687.1 CDS CLH_2306 NC_010723.1 2474619 2475389 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2474619..2475389) Clostridium botulinum E3 str. Alaska E43 6317760 YP_001921688.1 CDS CLH_2307 NC_010723.1 2475364 2476344 R ABC transporter substrate-binding protein complement(2475364..2476344) Clostridium botulinum E3 str. Alaska E43 6319528 YP_001921689.1 CDS CLH_2308 NC_010723.1 2476665 2477084 R identified by match to protein family HMM PF03885; hypothetical protein complement(2476665..2477084) Clostridium botulinum E3 str. Alaska E43 6317736 YP_001921690.1 CDS CLH_2309 NC_010723.1 2477255 2477554 D hypothetical protein 2477255..2477554 Clostridium botulinum E3 str. Alaska E43 6318415 YP_001921691.1 CDS asnB NC_010723.1 2477699 2479543 R identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase complement(2477699..2479543) Clostridium botulinum E3 str. Alaska E43 6318130 YP_001921692.1 CDS CLH_2311 NC_010723.1 2479799 2481202 D identified by match to protein family HMM PF03323; stage V sporulation protein AF 2479799..2481202 Clostridium botulinum E3 str. Alaska E43 6317459 YP_001921693.1 CDS CLH_2312 NC_010723.1 2481319 2482155 R S1 RNA binding domain complement(2481319..2482155) Clostridium botulinum E3 str. Alaska E43 6320372 YP_001921694.1 CDS CLH_2313 NC_010723.1 2482179 2482688 R identified by match to protein family HMM PF00132; ferripyochelin binding protein complement(2482179..2482688) Clostridium botulinum E3 str. Alaska E43 6318889 YP_001921695.1 CDS CLH_2314 NC_010723.1 2483016 2483825 D hypothetical protein 2483016..2483825 Clostridium botulinum E3 str. Alaska E43 6320582 YP_001921696.1 CDS CLH_2315 NC_010723.1 2484010 2484129 R identified by glimmer; putative; hypothetical protein complement(2484010..2484129) Clostridium botulinum E3 str. Alaska E43 6320126 YP_001921697.1 CDS CLH_2316 NC_010723.1 2484189 2484524 R hypothetical protein complement(2484189..2484524) Clostridium botulinum E3 str. Alaska E43 6317855 YP_001921698.1 CDS CLH_2317 NC_010723.1 2484753 2485220 D identified by match to protein family HMM PF01037; transcriptional regulator, AsnC family 2484753..2485220 Clostridium botulinum E3 str. Alaska E43 6319413 YP_001921699.1 CDS CLH_2318 NC_010723.1 2485299 2485499 D identified by match to protein family HMM PF04070; hypothetical protein 2485299..2485499 Clostridium botulinum E3 str. Alaska E43 6319512 YP_001921700.1 CDS CLH_2319 NC_010723.1 2485644 2486405 D identified by match to protein family HMM PF06541; hypothetical protein 2485644..2486405 Clostridium botulinum E3 str. Alaska E43 6317875 YP_001921701.1 CDS CLH_2320 NC_010723.1 2486456 2488207 R hypothetical protein complement(2486456..2488207) Clostridium botulinum E3 str. Alaska E43 6320078 YP_001921702.1 CDS CLH_2321 NC_010723.1 2488426 2489292 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 2488426..2489292 Clostridium botulinum E3 str. Alaska E43 6319106 YP_001921703.1 CDS gltX NC_010723.1 2489447 2490904 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2489447..2490904 Clostridium botulinum E3 str. Alaska E43 6318920 YP_001921704.1 CDS CLH_2323 NC_010723.1 2491044 2491799 R hypothetical protein complement(2491044..2491799) Clostridium botulinum E3 str. Alaska E43 6320410 YP_001921705.1 CDS CLH_2324 NC_010723.1 2491814 2492542 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD-superfamily hydrolase complement(2491814..2492542) Clostridium botulinum E3 str. Alaska E43 6319980 YP_001921706.1 CDS CLH_2325 NC_010723.1 2492772 2492993 D identified by match to protein family HMM PF04023; hypothetical protein 2492772..2492993 Clostridium botulinum E3 str. Alaska E43 6317387 YP_001921707.1 CDS feoB NC_010723.1 2493008 2494771 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B 2493008..2494771 Clostridium botulinum E3 str. Alaska E43 6317877 YP_001921708.1 CDS CLH_2327 NC_010723.1 2495145 2496257 R identified by match to protein family HMM PF01594; permease complement(2495145..2496257) Clostridium botulinum E3 str. Alaska E43 6320385 YP_001921709.1 CDS argS NC_010723.1 2496539 2498230 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(2496539..2498230) Clostridium botulinum E3 str. Alaska E43 6318837 YP_001921710.1 CDS CLH_2329 NC_010723.1 2498789 2500294 D identified by match to protein family HMM PF02541; Ppx/GppA phosphatase family protein 2498789..2500294 Clostridium botulinum E3 str. Alaska E43 6317468 YP_001921711.1 CDS CLH_2330 NC_010723.1 2500425 2501063 R identified by match to protein family HMM PF02163; peptidase, M50 family complement(2500425..2501063) Clostridium botulinum E3 str. Alaska E43 6317686 YP_001921712.1 CDS CLH_2331 NC_010723.1 2501305 2502336 R hypothetical protein complement(2501305..2502336) Clostridium botulinum E3 str. Alaska E43 6317984 YP_001921713.1 CDS CLH_2332 NC_010723.1 2502355 2503398 R hypothetical protein complement(2502355..2503398) Clostridium botulinum E3 str. Alaska E43 6319850 YP_001921714.1 CDS CLH_2333 NC_010723.1 2503653 2504621 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; biotin-[acetyl-CoA-carboxylase] ligase 2503653..2504621 Clostridium botulinum E3 str. Alaska E43 6319442 YP_001921715.1 CDS asnA NC_010723.1 2504855 2505868 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(2504855..2505868) Clostridium botulinum E3 str. Alaska E43 6319428 YP_001921716.1 CDS CLH_2335 NC_010723.1 2506027 2506977 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(2506027..2506977) Clostridium botulinum E3 str. Alaska E43 6319957 YP_001921717.1 CDS CLH_2336 NC_010723.1 2507347 2507961 D identified by match to protein family HMM PF00929; exonuclease 2507347..2507961 Clostridium botulinum E3 str. Alaska E43 6319639 YP_001921718.1 CDS CLH_2337 NC_010723.1 2508151 2508312 D identified by match to protein family HMM PF00301; rubredoxin 2508151..2508312 Clostridium botulinum E3 str. Alaska E43 6319612 YP_001921719.1 CDS pflA NC_010723.1 2508512 2509222 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase 1-activating enzyme complement(2508512..2509222) Clostridium botulinum E3 str. Alaska E43 6318819 YP_001921720.1 CDS pflB NC_010723.1 2509385 2511613 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(2509385..2511613) Clostridium botulinum E3 str. Alaska E43 6320446 YP_001921721.1 CDS CLH_2340 NC_010723.1 2512039 2513415 D hypothetical protein 2512039..2513415 Clostridium botulinum E3 str. Alaska E43 6318643 YP_001921722.1 CDS pyrE NC_010723.1 2513561 2514235 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2513561..2514235) Clostridium botulinum E3 str. Alaska E43 6318484 YP_001921723.1 CDS pyrD NC_010723.1 2514284 2515180 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(2514284..2515180) Clostridium botulinum E3 str. Alaska E43 6319059 YP_001921724.1 CDS CLH_2343 NC_010723.1 2515202 2515945 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(2515202..2515945) Clostridium botulinum E3 str. Alaska E43 6318053 YP_001921725.1 CDS pyrF NC_010723.1 2515959 2516831 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2515959..2516831) Clostridium botulinum E3 str. Alaska E43 6319302 YP_001921726.1 CDS CLH_2345 NC_010723.1 2516943 2518139 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type complement(2516943..2518139) Clostridium botulinum E3 str. Alaska E43 6317536 YP_001921727.1 CDS CLH_2346 NC_010723.1 2518164 2518595 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(2518164..2518595) Clostridium botulinum E3 str. Alaska E43 6317673 YP_001921728.1 CDS pyrB NC_010723.1 2518597 2519520 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2518597..2519520) Clostridium botulinum E3 str. Alaska E43 6319231 YP_001921729.1 CDS uppP NC_010723.1 2520083 2520940 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(2520083..2520940) Clostridium botulinum E3 str. Alaska E43 6320239 YP_001921730.1 CDS CLH_2349 NC_010723.1 2521007 2522134 R hypothetical protein complement(2521007..2522134) Clostridium botulinum E3 str. Alaska E43 6319638 YP_001921731.1 CDS CLH_2350 NC_010723.1 2522298 2524067 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(2522298..2524067) Clostridium botulinum E3 str. Alaska E43 6319378 YP_001921732.1 CDS CLH_2351 NC_010723.1 2524263 2525624 D identified by match to protein family HMM PF08245; match to protein family HMM PF08353; Mur ligase family protein 2524263..2525624 Clostridium botulinum E3 str. Alaska E43 6317406 YP_001921733.1 CDS CLH_2352 NC_010723.1 2525643 2526374 D identified by match to protein family HMM PF07685; CobB/CobQ family glutamine amidotransferase 2525643..2526374 Clostridium botulinum E3 str. Alaska E43 6317457 YP_001921734.1 CDS CLH_2353 NC_010723.1 2526450 2527196 R identified by match to protein family HMM PF01522; peptidoglycan N-acetylglucosamine deacetylase complement(2526450..2527196) Clostridium botulinum E3 str. Alaska E43 6320480 YP_001921735.1 CDS CLH_2354 NC_010723.1 2527439 2528716 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2527439..2528716 Clostridium botulinum E3 str. Alaska E43 6319102 YP_001921736.1 CDS CLH_2355 NC_010723.1 2528776 2529375 D identified by match to protein family HMM PF01613; flavoredoxin 2528776..2529375 Clostridium botulinum E3 str. Alaska E43 6318366 YP_001921737.1 CDS CLH_2356 NC_010723.1 2529548 2529886 R identified by match to protein family HMM PF03960; ArsC family complement(2529548..2529886) Clostridium botulinum E3 str. Alaska E43 6319220 YP_001921738.1 CDS CLH_2357 NC_010723.1 2530102 2531055 D putative acyltransferase 2530102..2531055 Clostridium botulinum E3 str. Alaska E43 6319099 YP_001921739.1 CDS CLH_2358 NC_010723.1 2531094 2531741 R identified by match to protein family HMM PF09335; DedA family membrane protein complement(2531094..2531741) Clostridium botulinum E3 str. Alaska E43 6319349 YP_001921740.1 CDS CLH_2359 NC_010723.1 2531858 2533195 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(2531858..2533195) Clostridium botulinum E3 str. Alaska E43 6320490 YP_001921741.1 CDS CLH_2360 NC_010723.1 2533547 2535310 R identified by match to protein family HMM PF01473; surface protein PspA complement(2533547..2535310) Clostridium botulinum E3 str. Alaska E43 6317367 YP_001921742.1 CDS CLH_2361 NC_010723.1 2535733 2536605 D identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 2535733..2536605 Clostridium botulinum E3 str. Alaska E43 6318902 YP_001921743.1 CDS CLH_2362 NC_010723.1 2536734 2538416 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(2536734..2538416) Clostridium botulinum E3 str. Alaska E43 6319748 YP_001921744.1 CDS CLH_2363 NC_010723.1 2538944 2540605 D identified by match to protein family HMM PF01473; surface protein PspC 2538944..2540605 Clostridium botulinum E3 str. Alaska E43 6320350 YP_001921745.1 CDS CLH_2364 NC_010723.1 2540727 2541308 R identified by match to protein family HMM PF00132; chloramphenicol acetyltransferase complement(2540727..2541308) Clostridium botulinum E3 str. Alaska E43 6318683 YP_001921746.1 CDS CLH_2365 NC_010723.1 2541880 2543052 D identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 2541880..2543052 Clostridium botulinum E3 str. Alaska E43 6319275 YP_001921747.1 CDS CLH_2366 NC_010723.1 2543389 2543784 D hypothetical protein 2543389..2543784 Clostridium botulinum E3 str. Alaska E43 6317293 YP_001921748.1 CDS CLH_2367 NC_010723.1 2543866 2544372 R hypothetical protein complement(2543866..2544372) Clostridium botulinum E3 str. Alaska E43 6318424 YP_001921749.1 CDS CLH_2368 NC_010723.1 2544595 2544891 R identified by glimmer; putative; hypothetical protein complement(2544595..2544891) Clostridium botulinum E3 str. Alaska E43 6317513 YP_001921750.1 CDS CLH_2369 NC_010723.1 2544947 2545240 R hypothetical protein complement(2544947..2545240) Clostridium botulinum E3 str. Alaska E43 6318570 YP_001921751.1 CDS CLH_2370 NC_010723.1 2545390 2545557 R DNA polymerase, beta domain-containing protein region complement(2545390..2545557) Clostridium botulinum E3 str. Alaska E43 6319661 YP_001921752.1 CDS CLH_2371 NC_010723.1 2545766 2546458 R filamentation induced by cAMP protein fic complement(2545766..2546458) Clostridium botulinum E3 str. Alaska E43 6318815 YP_001921753.1 CDS CLH_2372 NC_010723.1 2546684 2546797 R identified by glimmer; putative; hypothetical protein complement(2546684..2546797) Clostridium botulinum E3 str. Alaska E43 6319096 YP_001921754.1 CDS CLH_2373 NC_010723.1 2546840 2547145 R identified by glimmer; putative; hypothetical protein complement(2546840..2547145) Clostridium botulinum E3 str. Alaska E43 6318473 YP_001921755.1 CDS CLH_2374 NC_010723.1 2547290 2547571 D identified by glimmer; putative; hypothetical protein 2547290..2547571 Clostridium botulinum E3 str. Alaska E43 6320171 YP_001921756.1 CDS CLH_2375 NC_010723.1 2547591 2547830 D identified by glimmer; putative; hypothetical protein 2547591..2547830 Clostridium botulinum E3 str. Alaska E43 6319515 YP_001921757.1 CDS CLH_2376 NC_010723.1 2548473 2548934 R identified by match to protein family HMM PF00583; spermine/spermidine acetyltransferase complement(2548473..2548934) Clostridium botulinum E3 str. Alaska E43 6320259 YP_001921758.1 CDS CLH_2377 NC_010723.1 2549300 2550292 D identified by match to protein family HMM PF02275; penicillin acylase 2549300..2550292 Clostridium botulinum E3 str. Alaska E43 6317505 YP_001921759.1 CDS CLH_2378 NC_010723.1 2550524 2551864 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inner membrane protein YicO complement(2550524..2551864) Clostridium botulinum E3 str. Alaska E43 6320556 YP_001921760.1 CDS CLH_2379 NC_010723.1 2552463 2552696 R hypothetical protein complement(2552463..2552696) Clostridium botulinum E3 str. Alaska E43 6320114 YP_001921761.1 CDS CLH_2380 NC_010723.1 2552698 2553183 R hypothetical protein complement(2552698..2553183) Clostridium botulinum E3 str. Alaska E43 6318987 YP_001921762.1 CDS CLH_2381 NC_010723.1 2553180 2553407 R hypothetical protein complement(2553180..2553407) Clostridium botulinum E3 str. Alaska E43 6319109 YP_001921763.1 CDS CLH_2382 NC_010723.1 2553821 2554849 D ABC transporter substrate-binding protein 2553821..2554849 Clostridium botulinum E3 str. Alaska E43 6319530 YP_001921764.1 CDS CLH_2383 NC_010723.1 2554869 2555636 D identified by match to protein family HMM PF00005; aliphatic sulfonates import ATP-binding protein SsuB 2554869..2555636 Clostridium botulinum E3 str. Alaska E43 6318776 YP_001921765.1 CDS CLH_2384 NC_010723.1 2555629 2556429 D identified by match to protein family HMM PF00528; ABC transporter permease 2555629..2556429 Clostridium botulinum E3 str. Alaska E43 6320195 YP_001921766.1 CDS CLH_2385 NC_010723.1 2556671 2557057 D identified by match to protein family HMM PF03788; LrgA family protein 2556671..2557057 Clostridium botulinum E3 str. Alaska E43 6317496 YP_001921767.1 CDS CLH_2386 NC_010723.1 2557041 2557754 D identified by match to protein family HMM PF04172; LrgB family protein 2557041..2557754 Clostridium botulinum E3 str. Alaska E43 6318977 YP_001921768.1 CDS CLH_2387 NC_010723.1 2558194 2560350 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase complement(2558194..2560350) Clostridium botulinum E3 str. Alaska E43 6317671 YP_001921769.1 CDS CLH_2388 NC_010723.1 2560500 2561000 R identified by match to protein family HMM PF03073; TspO/MBR family protein complement(2560500..2561000) Clostridium botulinum E3 str. Alaska E43 6317506 YP_001921770.1 CDS CLH_2389 NC_010723.1 2561100 2561216 R identified by glimmer; putative; hypothetical protein complement(2561100..2561216) Clostridium botulinum E3 str. Alaska E43 6318013 YP_001921771.1 CDS CLH_2390 NC_010723.1 2561282 2563297 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase complement(2561282..2563297) Clostridium botulinum E3 str. Alaska E43 6318991 YP_001921772.1 CDS CLH_2391 NC_010723.1 2563299 2564621 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2563299..2564621) Clostridium botulinum E3 str. Alaska E43 6320368 YP_001921773.1 CDS CLH_2392 NC_010723.1 2565498 2567780 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein complement(2565498..2567780) Clostridium botulinum E3 str. Alaska E43 6319394 YP_001921774.1 CDS CLH_2393 NC_010723.1 2567792 2570065 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein complement(2567792..2570065) Clostridium botulinum E3 str. Alaska E43 6319881 YP_001921775.1 CDS CLH_2394 NC_010723.1 2570624 2571736 R identified by match to protein family HMM PF01270; glycosyl hydrolase family protein complement(2570624..2571736) Clostridium botulinum E3 str. Alaska E43 6320231 YP_001921776.1 CDS CLH_2395 NC_010723.1 2571777 2572343 R identified by match to protein family HMM PF01464; transglycosylase complement(2571777..2572343) Clostridium botulinum E3 str. Alaska E43 6318163 YP_001921777.1 CDS coaE NC_010723.1 2572587 2573183 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(2572587..2573183) Clostridium botulinum E3 str. Alaska E43 6320482 YP_001921778.1 CDS polA NC_010723.1 2573206 2575821 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(2573206..2575821) Clostridium botulinum E3 str. Alaska E43 6317658 YP_001921779.1 CDS CLH_2398 NC_010723.1 2576327 2577556 D identified by match to protein family HMM PF02073; aminopeptidase II 2576327..2577556 Clostridium botulinum E3 str. Alaska E43 6318844 YP_001921780.1 CDS CLH_2399 NC_010723.1 2577881 2578018 R identified by glimmer; putative; hypothetical protein complement(2577881..2578018) Clostridium botulinum E3 str. Alaska E43 6319144 YP_001921781.1 CDS dcd NC_010723.1 2578112 2578633 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2578112..2578633) Clostridium botulinum E3 str. Alaska E43 6317310 YP_001921782.1 CDS CLH_2401 NC_010723.1 2578926 2580134 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2578926..2580134) Clostridium botulinum E3 str. Alaska E43 6317248 YP_001921783.1 CDS CLH_2402 NC_010723.1 2580271 2581281 R identified by match to protein family HMM PF03601; membrane protein complement(2580271..2581281) Clostridium botulinum E3 str. Alaska E43 6318671 YP_001921784.1 CDS CLH_2403 NC_010723.1 2581407 2582282 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR-family transcriptional regulator complement(2581407..2582282) Clostridium botulinum E3 str. Alaska E43 6317422 YP_001921785.1 CDS CLH_2404 NC_010723.1 2582583 2583743 R identified by match to protein family HMM PF01098; stage V sporulation protein E complement(2582583..2583743) Clostridium botulinum E3 str. Alaska E43 6320600 YP_001921786.1 CDS CLH_2405 NC_010723.1 2584101 2584640 R identified by glimmer; putative; hypothetical protein complement(2584101..2584640) Clostridium botulinum E3 str. Alaska E43 6317900 YP_001921787.1 CDS CLH_2406 NC_010723.1 2584686 2585153 R identified by match to protein family HMM PF00583; putative acetyltransferase complement(2584686..2585153) Clostridium botulinum E3 str. Alaska E43 6320023 YP_001921788.1 CDS CLH_2407 NC_010723.1 2585866 2585979 R identified by glimmer; putative; hypothetical protein complement(2585866..2585979) Clostridium botulinum E3 str. Alaska E43 6318455 YP_001921789.1 CDS CLH_2408 NC_010723.1 2586206 2586403 R identified by glimmer; putative; hypothetical protein complement(2586206..2586403) Clostridium botulinum E3 str. Alaska E43 6318665 YP_001921790.1 CDS CLH_2409 NC_010723.1 2586515 2586628 R identified by glimmer; putative; hypothetical protein complement(2586515..2586628) Clostridium botulinum E3 str. Alaska E43 6320260 YP_001921791.1 CDS CLH_2410 NC_010723.1 2587128 2587496 D identified by match to protein family HMM PF06953; arsenical resistance operon trans-acting repressor ArsD 2587128..2587496 Clostridium botulinum E3 str. Alaska E43 6318010 YP_001921792.1 CDS arsA NC_010723.1 2587557 2589305 D identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase ArsA 2587557..2589305 Clostridium botulinum E3 str. Alaska E43 6318269 YP_001921793.1 CDS CLH_2412 NC_010723.1 2589419 2589883 R identified by glimmer; putative; hypothetical protein complement(2589419..2589883) Clostridium botulinum E3 str. Alaska E43 6318219 YP_001921794.1 CDS CLH_2413 NC_010723.1 2590313 2590612 R identified by glimmer; putative; hypothetical protein complement(2590313..2590612) Clostridium botulinum E3 str. Alaska E43 6319950 YP_001921795.1 CDS CLH_2414 NC_010723.1 2590971 2591816 R putative lipoprotein complement(2590971..2591816) Clostridium botulinum E3 str. Alaska E43 6317551 YP_001921796.1 CDS CLH_2415 NC_010723.1 2592206 2593975 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; membrane associated methyl-accepting chemotaxis protein with hamp domain complement(2592206..2593975) Clostridium botulinum E3 str. Alaska E43 6318705 YP_001921797.1 CDS CLH_2416 NC_010723.1 2594440 2595732 D identified by match to protein family HMM PF01547; maltose-binding protein 2594440..2595732 Clostridium botulinum E3 str. Alaska E43 6320128 YP_001921798.1 CDS CLH_2417 NC_010723.1 2595984 2596850 D identified by match to protein family HMM PF00528; ABC transporter permease 2595984..2596850 Clostridium botulinum E3 str. Alaska E43 6319992 YP_001921799.1 CDS CLH_2418 NC_010723.1 2596850 2597755 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 2596850..2597755 Clostridium botulinum E3 str. Alaska E43 6320440 YP_001921800.1 CDS CLH_2419 NC_010723.1 2597984 2598865 R identified by match to protein family HMM PF07885; Ion channel family complement(2597984..2598865) Clostridium botulinum E3 str. Alaska E43 6318183 YP_001921801.1 CDS CLH_2420 NC_010723.1 2598883 2599569 R hypothetical protein complement(2598883..2599569) Clostridium botulinum E3 str. Alaska E43 6320251 YP_001921802.1 CDS CLH_2421 NC_010723.1 2599775 2601808 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(2599775..2601808) Clostridium botulinum E3 str. Alaska E43 6320185 YP_001921803.1 CDS CLH_2422 NC_010723.1 2602156 2604204 R identified by match to protein family HMM PF01473; match to protein family HMM PF01520; surface protein PspC complement(2602156..2604204) Clostridium botulinum E3 str. Alaska E43 6317238 YP_001921804.1 CDS CLH_2423 NC_010723.1 2604513 2605142 R identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ complement(2604513..2605142) Clostridium botulinum E3 str. Alaska E43 6320522 YP_001921805.1 CDS CLH_2424 NC_010723.1 2605600 2606187 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; sigma-70 region 2 domain-containing protein 2605600..2606187 Clostridium botulinum E3 str. Alaska E43 6319722 YP_001921806.1 CDS CLH_2425 NC_010723.1 2606241 2606354 R identified by glimmer; putative; hypothetical protein complement(2606241..2606354) Clostridium botulinum E3 str. Alaska E43 6319280 YP_001921807.1 CDS CLH_2426 NC_010723.1 2606508 2607788 R identified by match to protein family HMM PF02588; integral membrane protein complement(2606508..2607788) Clostridium botulinum E3 str. Alaska E43 6319017 YP_001921808.1 CDS CLH_2427 NC_010723.1 2607788 2608216 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2607788..2608216) Clostridium botulinum E3 str. Alaska E43 6319693 YP_001921809.1 CDS CLH_2428 NC_010723.1 2608768 2608965 D hypothetical protein 2608768..2608965 Clostridium botulinum E3 str. Alaska E43 6319505 YP_001921810.1 CDS CLH_2429 NC_010723.1 2609115 2610179 R identified by glimmer; putative; hypothetical protein complement(2609115..2610179) Clostridium botulinum E3 str. Alaska E43 6317517 YP_001921811.1 CDS CLH_2430 NC_010723.1 2610278 2610790 R identified by match to protein family HMM PF04229; hypothetical protein complement(2610278..2610790) Clostridium botulinum E3 str. Alaska E43 6318149 YP_001921812.1 CDS CLH_2431 NC_010723.1 2610821 2611609 R identified by match to protein family HMM PF02698; hypothetical protein complement(2610821..2611609) Clostridium botulinum E3 str. Alaska E43 6319690 YP_001921813.1 CDS CLH_2432 NC_010723.1 2611671 2611874 R hypothetical protein complement(2611671..2611874) Clostridium botulinum E3 str. Alaska E43 6317450 YP_001921814.1 CDS CLH_2433 NC_010723.1 2612017 2612988 R identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase, family complement(2612017..2612988) Clostridium botulinum E3 str. Alaska E43 6317954 YP_001921815.1 CDS CLH_2434 NC_010723.1 2612978 2613127 R resolvase, N- domain complement(2612978..2613127) Clostridium botulinum E3 str. Alaska E43 6320414 YP_001921816.1 CDS CLH_2435 NC_010723.1 2613322 2613756 R identified by glimmer; putative; hypothetical protein complement(2613322..2613756) Clostridium botulinum E3 str. Alaska E43 6319519 YP_001921817.1 CDS CLH_2436 NC_010723.1 2613893 2614288 R hypothetical protein complement(2613893..2614288) Clostridium botulinum E3 str. Alaska E43 6319281 YP_001921818.1 CDS CLH_2438 NC_010723.1 2614645 2614812 D identified by glimmer; putative; hypothetical protein 2614645..2614812 Clostridium botulinum E3 str. Alaska E43 6319294 YP_001921819.1 CDS CLH_2437 NC_010723.1 2614809 2614991 R hypothetical protein complement(2614809..2614991) Clostridium botulinum E3 str. Alaska E43 6317259 YP_001921820.1 CDS CLH_2439 NC_010723.1 2615111 2616040 R identified by glimmer; putative; hypothetical protein complement(2615111..2616040) Clostridium botulinum E3 str. Alaska E43 6320041 YP_001921821.1 CDS CLH_2440 NC_010723.1 2616033 2616605 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; specialized sigma subunit of RNA polymerase complement(2616033..2616605) Clostridium botulinum E3 str. Alaska E43 6319949 YP_001921822.1 CDS CLH_2441 NC_010723.1 2616955 2617818 R identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; putative 2-hydroxy-3-oxopropionate reductase complement(2616955..2617818) Clostridium botulinum E3 str. Alaska E43 6317807 YP_001921823.1 CDS CLH_2442 NC_010723.1 2618027 2618563 R transcriptional regulator NfxB complement(2618027..2618563) Clostridium botulinum E3 str. Alaska E43 6317825 YP_001921824.1 CDS CLH_2443 NC_010723.1 2618847 2619605 R identified by match to protein family HMM PF08241; methyltransferase domain-containing protein complement(2618847..2619605) Clostridium botulinum E3 str. Alaska E43 6317548 YP_001921825.1 CDS CLH_2444 NC_010723.1 2619823 2620593 R identified by match to protein family HMM PF08241; methyltransferase complement(2619823..2620593) Clostridium botulinum E3 str. Alaska E43 6318716 YP_001921826.1 CDS CLH_2445 NC_010723.1 2621018 2621347 R identified by match to protein family HMM PF04993; TfoX N- domain family protein complement(2621018..2621347) Clostridium botulinum E3 str. Alaska E43 6317391 YP_001921827.1 CDS CLH_2446 NC_010723.1 2621372 2621761 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(2621372..2621761) Clostridium botulinum E3 str. Alaska E43 6318812 YP_001921828.1 CDS CLH_2447 NC_010723.1 2621831 2622340 R identified by match to protein family HMM PF08020; hypothetical protein complement(2621831..2622340) Clostridium botulinum E3 str. Alaska E43 6317255 YP_001921829.1 CDS CLH_2448 NC_010723.1 2622411 2622902 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2622411..2622902) Clostridium botulinum E3 str. Alaska E43 6318158 YP_001921830.1 CDS CLH_2449 NC_010723.1 2622960 2623220 R identified by match to protein family HMM PF04994; TfoX C- domain superfamily complement(2622960..2623220) Clostridium botulinum E3 str. Alaska E43 6318389 YP_001921831.1 CDS CLH_2450 NC_010723.1 2623465 2624121 R identified by match to protein family HMM PF00023; hypothetical protein complement(2623465..2624121) Clostridium botulinum E3 str. Alaska E43 6320073 YP_001921832.1 CDS CLH_2451 NC_010723.1 2624165 2625007 R protein YieJ complement(2624165..2625007) Clostridium botulinum E3 str. Alaska E43 6319703 YP_001921833.1 CDS CLH_2452 NC_010723.1 2625032 2625385 R hypothetical protein complement(2625032..2625385) Clostridium botulinum E3 str. Alaska E43 6320155 YP_001921834.1 CDS CLH_2453 NC_010723.1 2625418 2625666 R identified by glimmer; putative; hypothetical protein complement(2625418..2625666) Clostridium botulinum E3 str. Alaska E43 6319005 YP_001921835.1 CDS CLH_2454 NC_010723.1 2625701 2626327 R identified by match to protein family HMM PF08887; match to protein family HMM PF08906; hypothetical protein complement(2625701..2626327) Clostridium botulinum E3 str. Alaska E43 6319489 YP_001921836.1 CDS CLH_2455 NC_010723.1 2626822 2627640 R identified by match to protein family HMM TIGR01784; hypothetical protein complement(2626822..2627640) Clostridium botulinum E3 str. Alaska E43 6320130 YP_001921837.1 CDS CLH_2456 NC_010723.1 2627734 2628246 R identified by glimmer; putative; hypothetical protein complement(2627734..2628246) Clostridium botulinum E3 str. Alaska E43 6319941 YP_001921838.1 CDS CLH_2457 NC_010723.1 2628466 2629128 R BtrU protein complement(2628466..2629128) Clostridium botulinum E3 str. Alaska E43 6318954 YP_001921839.1 CDS CLH_2458 NC_010723.1 2629303 2629743 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2629303..2629743) Clostridium botulinum E3 str. Alaska E43 6320062 YP_001921840.1 CDS CLH_2459 NC_010723.1 2629895 2630530 D identified by match to protein family HMM PF09335; hypothetical protein 2629895..2630530 Clostridium botulinum E3 str. Alaska E43 6317271 YP_001921841.1 CDS CLH_2460 NC_010723.1 2630592 2631887 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase complement(2630592..2631887) Clostridium botulinum E3 str. Alaska E43 6318162 YP_001921842.1 CDS CLH_2461 NC_010723.1 2631884 2632570 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; regulatory protein VanR complement(2631884..2632570) Clostridium botulinum E3 str. Alaska E43 6319189 YP_001921843.1 CDS CLH_2462 NC_010723.1 2632584 2633144 R ribosomal RNA adenine dimethylase complement(2632584..2633144) Clostridium botulinum E3 str. Alaska E43 6319927 YP_001921844.1 CDS CLH_2463 NC_010723.1 2633908 2634708 R hypothetical protein complement(2633908..2634708) Clostridium botulinum E3 str. Alaska E43 6318936 YP_001921845.1 CDS CLH_2464 NC_010723.1 2634725 2635720 R hypothetical protein complement(2634725..2635720) Clostridium botulinum E3 str. Alaska E43 6317815 YP_001921846.1 CDS CLH_2465 NC_010723.1 2635704 2636219 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; sigma-70 family RNA polymerase sigma factor complement(2635704..2636219) Clostridium botulinum E3 str. Alaska E43 6320589 YP_001921847.1 CDS CLH_2466 NC_010723.1 2636372 2636488 R identified by glimmer; putative; hypothetical protein complement(2636372..2636488) Clostridium botulinum E3 str. Alaska E43 6320597 YP_001921848.1 CDS CLH_2467 NC_010723.1 2636534 2637661 R identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase complement(2636534..2637661) Clostridium botulinum E3 str. Alaska E43 6320201 YP_001921849.1 CDS CLH_2468 NC_010723.1 2637851 2638189 D identified by match to protein family HMM PF01638; HxlR family transcriptional regulator 2637851..2638189 Clostridium botulinum E3 str. Alaska E43 6317476 YP_001921850.1 CDS CLH_2469 NC_010723.1 2638461 2639084 R identified by match to protein family HMM PF00302; chloramphenicol O-acetyltransferase complement(2638461..2639084) Clostridium botulinum E3 str. Alaska E43 6318496 YP_001921851.1 CDS CLH_2470 NC_010723.1 2639385 2641292 R putative orphan protein complement(2639385..2641292) Clostridium botulinum E3 str. Alaska E43 6317885 YP_001921852.1 CDS CLH_2471 NC_010723.1 2641551 2642336 R identified by glimmer; putative; hypothetical protein complement(2641551..2642336) Clostridium botulinum E3 str. Alaska E43 6319153 YP_001921853.1 CDS CLH_2472 NC_010723.1 2642583 2643167 R hypothetical protein complement(2642583..2643167) Clostridium botulinum E3 str. Alaska E43 6319357 YP_001921854.1 CDS CLH_2473 NC_010723.1 2643145 2644017 R hypothetical protein complement(2643145..2644017) Clostridium botulinum E3 str. Alaska E43 6318628 YP_001921855.1 CDS CLH_2474 NC_010723.1 2644196 2644411 R hypothetical protein complement(2644196..2644411) Clostridium botulinum E3 str. Alaska E43 6319679 YP_001921856.1 CDS CLH_2475 NC_010723.1 2644463 2644825 R cassette chromosome recombinase B complement(2644463..2644825) Clostridium botulinum E3 str. Alaska E43 6320257 YP_001921857.1 CDS CLH_2476 NC_010723.1 2645054 2645770 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; site-specific DNA recombinase complement(2645054..2645770) Clostridium botulinum E3 str. Alaska E43 6319393 YP_001921858.1 CDS CLH_2477 NC_010723.1 2646065 2646502 R identified by glimmer; putative; hypothetical protein complement(2646065..2646502) Clostridium botulinum E3 str. Alaska E43 6317436 YP_001921859.1 CDS CLH_2478 NC_010723.1 2646518 2646727 R identified by glimmer; putative; hypothetical protein complement(2646518..2646727) Clostridium botulinum E3 str. Alaska E43 6317933 YP_001921860.1 CDS CLH_2479 NC_010723.1 2646788 2647072 R identified by glimmer; putative; hypothetical protein complement(2646788..2647072) Clostridium botulinum E3 str. Alaska E43 6318177 YP_001921861.1 CDS CLH_2480 NC_010723.1 2647338 2647889 R identified by glimmer; putative; hypothetical protein complement(2647338..2647889) Clostridium botulinum E3 str. Alaska E43 6319936 YP_001921862.1 CDS CLH_2481 NC_010723.1 2648233 2648382 R identified by glimmer; putative; hypothetical protein complement(2648233..2648382) Clostridium botulinum E3 str. Alaska E43 6317499 YP_001921863.1 CDS CLH_2482 NC_010723.1 2648384 2648692 R hypothetical protein complement(2648384..2648692) Clostridium botulinum E3 str. Alaska E43 6319237 YP_001921864.1 CDS CLH_2483 NC_010723.1 2648830 2649450 R hypothetical protein complement(2648830..2649450) Clostridium botulinum E3 str. Alaska E43 6317390 YP_001921865.1 CDS CLH_2484 NC_010723.1 2649467 2649760 R hypothetical protein complement(2649467..2649760) Clostridium botulinum E3 str. Alaska E43 6317977 YP_001921866.1 CDS CLH_2485 NC_010723.1 2649772 2650110 R identified by glimmer; putative; hypothetical protein complement(2649772..2650110) Clostridium botulinum E3 str. Alaska E43 6318104 YP_001921867.1 CDS CLH_2486 NC_010723.1 2650177 2650485 R hypothetical protein complement(2650177..2650485) Clostridium botulinum E3 str. Alaska E43 6317369 YP_001921868.1 CDS dcm NC_010723.1 2650555 2651469 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase complement(2650555..2651469) Clostridium botulinum E3 str. Alaska E43 6320011 YP_001921869.1 CDS CLH_2488 NC_010723.1 2651491 2652540 R identified by match to protein family HMM PF09519; type II restriction enzyme HgiDI complement(2651491..2652540) Clostridium botulinum E3 str. Alaska E43 6318392 YP_001921870.1 CDS CLH_2489 NC_010723.1 2652810 2653541 R identified by match to protein family HMM PF09234; hypothetical protein complement(2652810..2653541) Clostridium botulinum E3 str. Alaska E43 6319000 YP_001921871.1 CDS CLH_2490 NC_010723.1 2653679 2654572 R identified by glimmer; putative; hypothetical protein complement(2653679..2654572) Clostridium botulinum E3 str. Alaska E43 6317841 YP_001921872.1 CDS CLH_2491 NC_010723.1 2654846 2655256 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2654846..2655256) Clostridium botulinum E3 str. Alaska E43 6319682 YP_001921873.1 CDS CLH_2492 NC_010723.1 2655260 2655619 R identified by match to protein family HMM PF06304; hypothetical protein complement(2655260..2655619) Clostridium botulinum E3 str. Alaska E43 6318859 YP_001921874.1 CDS CLH_2493 NC_010723.1 2655603 2655992 R identified by match to protein family HMM PF06304; putative cytoplasmic protein complement(2655603..2655992) Clostridium botulinum E3 str. Alaska E43 6318021 YP_001921875.1 CDS CLH_2494 NC_010723.1 2655985 2656317 R identified by match to protein family HMM PF03551; transcriptional regulator, PadR family complement(2655985..2656317) Clostridium botulinum E3 str. Alaska E43 6319292 YP_001921876.1 CDS CLH_2495 NC_010723.1 2656629 2657165 R hypothetical protein complement(2656629..2657165) Clostridium botulinum E3 str. Alaska E43 6318713 YP_001921877.1 CDS CLH_2496 NC_010723.1 2657609 2657911 R hypothetical protein complement(2657609..2657911) Clostridium botulinum E3 str. Alaska E43 6318325 YP_001921878.1 CDS CLH_2497 NC_010723.1 2658238 2658894 D identified by match to protein family HMM PF07007; putative lipoprotein 2658238..2658894 Clostridium botulinum E3 str. Alaska E43 6317588 YP_001921879.1 CDS CLH_2498 NC_010723.1 2659081 2659293 R identified by glimmer; putative; hypothetical protein complement(2659081..2659293) Clostridium botulinum E3 str. Alaska E43 6318872 YP_001921880.1 CDS CLH_2499 NC_010723.1 2659397 2660194 R putative lipoprotein complement(2659397..2660194) Clostridium botulinum E3 str. Alaska E43 6317754 YP_001921881.1 CDS CLH_2500 NC_010723.1 2660409 2660657 R hypothetical protein complement(2660409..2660657) Clostridium botulinum E3 str. Alaska E43 6317341 YP_001921882.1 CDS CLH_2501 NC_010723.1 2660706 2661524 R identified by match to protein family HMM PF00753; metallo-beta-lactamase domain-containing protein complement(2660706..2661524) Clostridium botulinum E3 str. Alaska E43 6319982 YP_001921883.1 CDS CLH_2502 NC_010723.1 2661811 2662896 R identified by match to protein family HMM PF00144; beta-lactamase complement(2661811..2662896) Clostridium botulinum E3 str. Alaska E43 6318359 YP_001921884.1 CDS CLH_2503 NC_010723.1 2662998 2663636 R identified by match to protein family HMM PF00583; acetyltransferase complement(2662998..2663636) Clostridium botulinum E3 str. Alaska E43 6319731 YP_001921885.1 CDS CLH_2504 NC_010723.1 2663732 2664526 R identified by match to protein family HMM PF02274; amidinotransferase family protein complement(2663732..2664526) Clostridium botulinum E3 str. Alaska E43 6318827 YP_001921886.1 CDS CLH_2505 NC_010723.1 2664700 2665956 R identified by match to protein family HMM PF09681; match to protein family HMM TIGR01446; match to protein family HMM TIGR01714; putative phage replisome organizer complement(2664700..2665956) Clostridium botulinum E3 str. Alaska E43 6318346 YP_001921887.1 CDS CLH_2506 NC_010723.1 2666314 2667126 R identified by match to protein family HMM PF02498; match to protein family HMM PF03374; antirepressor, phage associated complement(2666314..2667126) Clostridium botulinum E3 str. Alaska E43 6319465 YP_001921888.1 CDS CLH_2507 NC_010723.1 2667159 2667365 R hypothetical protein complement(2667159..2667365) Clostridium botulinum E3 str. Alaska E43 6317307 YP_001921889.1 CDS CLH_2508 NC_010723.1 2667526 2668008 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 2667526..2668008 Clostridium botulinum E3 str. Alaska E43 6318397 YP_001921890.1 CDS CLH_2509 NC_010723.1 2668207 2668689 D identified by match to protein family HMM PF06114; hypothetical protein 2668207..2668689 Clostridium botulinum E3 str. Alaska E43 6317938 YP_001921891.1 CDS CLH_2510 NC_010723.1 2668833 2669504 R identified by match to protein family HMM PF02915; match to protein family HMM PF05067; CotJC protein complement(2668833..2669504) Clostridium botulinum E3 str. Alaska E43 6317809 YP_001921892.1 CDS CLH_2512 NC_010723.1 2669702 2670019 D identified by glimmer; putative; hypothetical protein 2669702..2670019 Clostridium botulinum E3 str. Alaska E43 6319115 YP_001921893.1 CDS CLH_2511 NC_010723.1 2670013 2670126 R identified by glimmer; putative; hypothetical protein complement(2670013..2670126) Clostridium botulinum E3 str. Alaska E43 6319185 YP_001921894.1 CDS CLH_2513 NC_010723.1 2670477 2671208 R identified by match to protein family HMM PF01473; 1,4-beta-N-acetylmuramidase complement(2670477..2671208) Clostridium botulinum E3 str. Alaska E43 6319255 YP_001921895.1 CDS CLH_2514 NC_010723.1 2671488 2672510 R putative lipoprotein complement(2671488..2672510) Clostridium botulinum E3 str. Alaska E43 6318569 YP_001921896.1 CDS CLH_2515 NC_010723.1 2672794 2672913 R identified by glimmer; putative; hypothetical protein complement(2672794..2672913) Clostridium botulinum E3 str. Alaska E43 6320373 YP_001921897.1 CDS CLH_2516 NC_010723.1 2673541 2674587 R hypothetical protein complement(2673541..2674587) Clostridium botulinum E3 str. Alaska E43 6319933 YP_001921898.1 CDS CLH_2517 NC_010723.1 2674836 2675390 R identified by match to protein family HMM PF04471; putative restriction endonuclase complement(2674836..2675390) Clostridium botulinum E3 str. Alaska E43 6320003 YP_001921899.1 CDS CLH_2518 NC_010723.1 2675623 2675787 R hypothetical protein complement(2675623..2675787) Clostridium botulinum E3 str. Alaska E43 6319576 YP_001921900.1 CDS CLH_2519 NC_010723.1 2675790 2676023 R identified by glimmer; putative; hypothetical protein complement(2675790..2676023) Clostridium botulinum E3 str. Alaska E43 6319511 YP_001921901.1 CDS CLH_2520 NC_010723.1 2676001 2676510 R hypothetical protein complement(2676001..2676510) Clostridium botulinum E3 str. Alaska E43 6318846 YP_001921902.1 CDS CLH_2521 NC_010723.1 2676500 2676721 R hypothetical protein complement(2676500..2676721) Clostridium botulinum E3 str. Alaska E43 6320108 YP_001921903.1 CDS CLH_2522 NC_010723.1 2676910 2677911 R hypothetical protein complement(2676910..2677911) Clostridium botulinum E3 str. Alaska E43 6318111 YP_001921904.1 CDS CLH_2523 NC_010723.1 2677937 2678626 R hypothetical protein complement(2677937..2678626) Clostridium botulinum E3 str. Alaska E43 6319477 YP_001921905.1 CDS CLH_2525 NC_010723.1 2679402 2679596 R hypothetical protein complement(2679402..2679596) Clostridium botulinum E3 str. Alaska E43 6320044 YP_001921906.1 CDS CLH_2526 NC_010723.1 2679700 2679909 D identified by glimmer; putative; hypothetical protein 2679700..2679909 Clostridium botulinum E3 str. Alaska E43 6319133 YP_001921907.1 CDS CLH_2527 NC_010723.1 2680068 2680838 D hypothetical protein 2680068..2680838 Clostridium botulinum E3 str. Alaska E43 6320236 YP_001921908.1 CDS CLH_2528 NC_010723.1 2680871 2681455 R putative lipoprotein complement(2680871..2681455) Clostridium botulinum E3 str. Alaska E43 6320008 YP_001921909.1 CDS CLH_2529 NC_010723.1 2681506 2681757 R identified by glimmer; putative; hypothetical protein complement(2681506..2681757) Clostridium botulinum E3 str. Alaska E43 6319227 YP_001921910.1 CDS CLH_2530 NC_010723.1 2682087 2682314 D hypothetical protein 2682087..2682314 Clostridium botulinum E3 str. Alaska E43 6317965 YP_001921911.1 CDS CLH_2531 NC_010723.1 2682414 2682632 D hypothetical protein 2682414..2682632 Clostridium botulinum E3 str. Alaska E43 6317549 YP_001921912.1 CDS CLH_2532 NC_010723.1 2682876 2683361 R putative lipoprotein complement(2682876..2683361) Clostridium botulinum E3 str. Alaska E43 6319908 YP_001921913.1 CDS CLH_2533 NC_010723.1 2683348 2684019 R identified by glimmer; putative; hypothetical protein complement(2683348..2684019) Clostridium botulinum E3 str. Alaska E43 6319143 YP_001921914.1 CDS CLH_2534 NC_010723.1 2684419 2685927 R identified by match to protein family HMM PF08903; hypothetical protein complement(2684419..2685927) Clostridium botulinum E3 str. Alaska E43 6317611 YP_001921915.1 CDS CLH_2535 NC_010723.1 2686420 2686929 R phosphoesterase complement(2686420..2686929) Clostridium botulinum E3 str. Alaska E43 6317988 YP_001921916.1 CDS CLH_2536 NC_010723.1 2687141 2688442 R identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534; cytochrome C biogenesis protein transmembrane region family complement(2687141..2688442) Clostridium botulinum E3 str. Alaska E43 6319784 YP_001921917.1 CDS trx NC_010723.1 2688444 2688761 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(2688444..2688761) Clostridium botulinum E3 str. Alaska E43 6319178 YP_001921918.1 CDS CLH_2538 NC_010723.1 2689057 2690865 D identified by match to protein family HMM PF01289; tetanolysin O 2689057..2690865 Clostridium botulinum E3 str. Alaska E43 6319146 YP_001921919.1 CDS CLH_2539 NC_010723.1 2691057 2691713 R identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin complement(2691057..2691713) Clostridium botulinum E3 str. Alaska E43 6320112 YP_001921920.1 CDS CLH_2540 NC_010723.1 2691887 2692489 R identified by glimmer; putative; hypothetical protein complement(2691887..2692489) Clostridium botulinum E3 str. Alaska E43 6317438 YP_001921921.1 CDS CLH_2541 NC_010723.1 2692507 2692926 R identified by glimmer; putative; hypothetical protein complement(2692507..2692926) Clostridium botulinum E3 str. Alaska E43 6318856 YP_001921922.1 CDS CLH_2542 NC_010723.1 2692929 2693045 R hypothetical protein complement(2692929..2693045) Clostridium botulinum E3 str. Alaska E43 6317761 YP_001921923.1 CDS CLH_2543 NC_010723.1 2693063 2693713 R identified by match to protein family HMM PF00023; hypothetical protein complement(2693063..2693713) Clostridium botulinum E3 str. Alaska E43 6319324 YP_001921924.1 CDS CLH_2544 NC_010723.1 2693784 2694347 R identified by glimmer; putative; hypothetical protein complement(2693784..2694347) Clostridium botulinum E3 str. Alaska E43 6318626 YP_001921925.1 CDS CLH_2545 NC_010723.1 2694484 2695065 R hypothetical protein complement(2694484..2695065) Clostridium botulinum E3 str. Alaska E43 6319812 YP_001921926.1 CDS CLH_2546 NC_010723.1 2695062 2695766 R identified by glimmer; putative; hypothetical protein complement(2695062..2695766) Clostridium botulinum E3 str. Alaska E43 6320585 YP_001921927.1 CDS CLH_2547 NC_010723.1 2696180 2697199 R identified by glimmer; putative; hypothetical protein complement(2696180..2697199) Clostridium botulinum E3 str. Alaska E43 6319248 YP_001921928.1 CDS CLH_2548 NC_010723.1 2697377 2697541 R identified by match to protein family HMM PF09388; Spo0E like sporulation regulatory protein complement(2697377..2697541) Clostridium botulinum E3 str. Alaska E43 6318587 YP_001921929.1 CDS CLH_2549 NC_010723.1 2697660 2698469 R identified by glimmer; putative; hypothetical protein complement(2697660..2698469) Clostridium botulinum E3 str. Alaska E43 6317661 YP_001921930.1 CDS CLH_2550 NC_010723.1 2698614 2699117 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2698614..2699117) Clostridium botulinum E3 str. Alaska E43 6320580 YP_001921931.1 CDS CLH_2551 NC_010723.1 2699221 2699448 R identified by glimmer; putative; hypothetical protein complement(2699221..2699448) Clostridium botulinum E3 str. Alaska E43 6318933 YP_001921932.1 CDS CLH_2552 NC_010723.1 2699935 2700411 D identified by glimmer; putative; hypothetical protein 2699935..2700411 Clostridium botulinum E3 str. Alaska E43 6318761 YP_001921933.1 CDS CLH_2553 NC_010723.1 2700513 2701427 R identified by match to protein family HMM PF00892; membrane protein complement(2700513..2701427) Clostridium botulinum E3 str. Alaska E43 6320294 YP_001921934.1 CDS CLH_2554 NC_010723.1 2702131 2702661 R identified by glimmer; putative; hypothetical protein complement(2702131..2702661) Clostridium botulinum E3 str. Alaska E43 6319079 YP_001921935.1 CDS lepB NC_010723.1 2703014 2703553 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2703014..2703553 Clostridium botulinum E3 str. Alaska E43 6318462 YP_001921936.1 CDS CLH_2556 NC_010723.1 2703774 2705510 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(2703774..2705510) Clostridium botulinum E3 str. Alaska E43 6320085 YP_001921937.1 CDS CLH_2557 NC_010723.1 2705838 2706056 R DEAD/DEAH box helicase complement(2705838..2706056) Clostridium botulinum E3 str. Alaska E43 6317464 YP_001921938.1 CDS CLH_2558 NC_010723.1 2706278 2707309 D hypothetical protein 2706278..2707309 Clostridium botulinum E3 str. Alaska E43 6317948 YP_001921939.1 CDS CLH_2559 NC_010723.1 2707471 2708742 R identified by match to protein family HMM PF02687; ABC-type transport system, involved in lipoprotein release, permease component complement(2707471..2708742) Clostridium botulinum E3 str. Alaska E43 6317607 YP_001921940.1 CDS CLH_2560 NC_010723.1 2708733 2709470 R identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB 2 complement(2708733..2709470) Clostridium botulinum E3 str. Alaska E43 6318586 YP_001921941.1 CDS CLH_2561 NC_010723.1 2709460 2710908 R identified by match to protein family HMM PF00529; putative HylD family protein complement(2709460..2710908) Clostridium botulinum E3 str. Alaska E43 6319634 YP_001921942.1 CDS CLH_2562 NC_010723.1 2710927 2712048 R putative viral A-type inclusion protein complement(2710927..2712048) Clostridium botulinum E3 str. Alaska E43 6319902 YP_001921943.1 CDS CLH_2563 NC_010723.1 2712401 2712916 R identified by match to protein family HMM PF02632; BioY protein complement(2712401..2712916) Clostridium botulinum E3 str. Alaska E43 6320069 YP_001921944.1 CDS CLH_2564 NC_010723.1 2713389 2713931 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin complement(2713389..2713931) Clostridium botulinum E3 str. Alaska E43 6320497 YP_001921945.1 CDS CLH_2565 NC_010723.1 2714450 2714992 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin complement(2714450..2714992) Clostridium botulinum E3 str. Alaska E43 6318131 YP_001921946.1 CDS CLH_2566 NC_010723.1 2715473 2716366 D hypothetical protein 2715473..2716366 Clostridium botulinum E3 str. Alaska E43 6319994 YP_001921947.1 CDS CLH_2567 NC_010723.1 2716621 2718645 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(2716621..2718645) Clostridium botulinum E3 str. Alaska E43 6318212 YP_001921948.1 CDS CLH_2568 NC_010723.1 2719114 2719236 R identified by glimmer; putative; hypothetical protein complement(2719114..2719236) Clostridium botulinum E3 str. Alaska E43 6318785 YP_001921949.1 CDS CLH_2569 NC_010723.1 2719229 2720248 R identified by match to protein family HMM PF00224; pyruvate kinase, barrel domain complement(2719229..2720248) Clostridium botulinum E3 str. Alaska E43 6317439 YP_001921950.1 CDS CLH_2570 NC_010723.1 2720585 2721070 D putative lipoprotein 2720585..2721070 Clostridium botulinum E3 str. Alaska E43 6318978 YP_001921951.1 CDS CLH_2571 NC_010723.1 2721397 2722230 D identified by match to protein family HMM PF02811; PHP domain-containing protein 2721397..2722230 Clostridium botulinum E3 str. Alaska E43 6320418 YP_001921952.1 CDS CLH_2572 NC_010723.1 2722389 2722640 R hypothetical protein complement(2722389..2722640) Clostridium botulinum E3 str. Alaska E43 6319323 YP_001921953.1 CDS CLH_2573 NC_010723.1 2722869 2724260 R catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase complement(2722869..2724260) Clostridium botulinum E3 str. Alaska E43 6319684 YP_001921954.1 CDS hprK NC_010723.1 2724437 2725351 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(2724437..2725351) Clostridium botulinum E3 str. Alaska E43 6320218 YP_001921955.1 CDS CLH_2575 NC_010723.1 2725368 2725556 R identified by match to protein family HMM PF05979; hypothetical protein complement(2725368..2725556) Clostridium botulinum E3 str. Alaska E43 6320119 YP_001921956.1 CDS CLH_2576 NC_010723.1 2725989 2726204 D identified by glimmer; putative; hypothetical protein 2725989..2726204 Clostridium botulinum E3 str. Alaska E43 6318686 YP_001921957.1 CDS CLH_2577 NC_010723.1 2727017 2727415 R hypothetical protein complement(2727017..2727415) Clostridium botulinum E3 str. Alaska E43 6317239 YP_001921958.1 CDS CLH_2578 NC_010723.1 2727429 2727680 R identified by match to protein family HMM PF06949; hypothetical protein complement(2727429..2727680) Clostridium botulinum E3 str. Alaska E43 6318255 YP_001921959.1 CDS CLH_2579 NC_010723.1 2727780 2730065 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase, UvrD/REP family complement(2727780..2730065) Clostridium botulinum E3 str. Alaska E43 6317323 YP_001921960.1 CDS CLH_2580 NC_010723.1 2730579 2731124 R hypothetical protein complement(2730579..2731124) Clostridium botulinum E3 str. Alaska E43 6319010 YP_001921961.1 CDS CLH_2581 NC_010723.1 2731610 2734021 R identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; 5-methyltetrahydrofolate--homocysteine methyltransferase complement(2731610..2734021) Clostridium botulinum E3 str. Alaska E43 6320018 YP_001921962.1 CDS CLH_2582 NC_010723.1 2734011 2734697 R identified by match to protein family HMM PF02965; vitamin B12 dependent methionine synthase, activation domain-containing protein complement(2734011..2734697) Clostridium botulinum E3 str. Alaska E43 6319205 YP_001921963.1 CDS luxS NC_010723.1 2734699 2735154 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2734699..2735154) Clostridium botulinum E3 str. Alaska E43 6320248 YP_001921964.1 CDS metF NC_010723.1 2735196 2736074 R identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase complement(2735196..2736074) Clostridium botulinum E3 str. Alaska E43 6319142 YP_001921965.1 CDS tagO NC_010723.1 2736344 2737294 R identified by match to protein family HMM PF00953; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase complement(2736344..2737294) Clostridium botulinum E3 str. Alaska E43 6318176 YP_001921966.1 CDS CLH_2586 NC_010723.1 2737652 2739400 R identified by match to protein family HMM PF00149; match to protein family HMM PF01476; match to protein family HMM PF02872; nucleotidase complement(2737652..2739400) Clostridium botulinum E3 str. Alaska E43 6319996 YP_001921967.1 CDS CLH_2587 NC_010723.1 2739747 2740388 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(2739747..2740388) Clostridium botulinum E3 str. Alaska E43 6320016 YP_001921968.1 CDS CLH_2588 NC_010723.1 2740392 2741771 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(2740392..2741771) Clostridium botulinum E3 str. Alaska E43 6317424 YP_001921969.1 CDS CLH_2589 NC_010723.1 2741764 2743542 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(2741764..2743542) Clostridium botulinum E3 str. Alaska E43 6317670 YP_001921970.1 CDS CLH_2590 NC_010723.1 2743560 2743871 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(2743560..2743871) Clostridium botulinum E3 str. Alaska E43 6317538 YP_001921971.1 CDS CLH_2591 NC_010723.1 2743864 2744865 R produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C complement(2743864..2744865) Clostridium botulinum E3 str. Alaska E43 6318639 YP_001921972.1 CDS CLH_2592 NC_010723.1 2744878 2745468 R identified by match to protein family HMM PF01991; ATP synthase (E/31 kDa) subunit complement(2744878..2745468) Clostridium botulinum E3 str. Alaska E43 6317563 YP_001921973.1 CDS CLH_2593 NC_010723.1 2745503 2745988 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(2745503..2745988) Clostridium botulinum E3 str. Alaska E43 6319058 YP_001921974.1 CDS CLH_2594 NC_010723.1 2746002 2747936 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(2746002..2747936) Clostridium botulinum E3 str. Alaska E43 6319771 YP_001921975.1 CDS CLH_2595 NC_010723.1 2747953 2748279 R V-type sodium ATP synthase subunit G complement(2747953..2748279) Clostridium botulinum E3 str. Alaska E43 6318093 YP_001921976.1 CDS CLH_2596 NC_010723.1 2748496 2750160 R identified by match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM domain protein complement(2748496..2750160) Clostridium botulinum E3 str. Alaska E43 6318025 YP_001921977.1 CDS CLH_2597 NC_010723.1 2750135 2750698 R hypothetical protein complement(2750135..2750698) Clostridium botulinum E3 str. Alaska E43 6318861 YP_001921978.1 CDS CLH_2598 NC_010723.1 2750889 2752190 R hypothetical protein complement(2750889..2752190) Clostridium botulinum E3 str. Alaska E43 6319384 YP_001921979.1 CDS spoVB NC_010723.1 2752387 2753886 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900; stage V sporulation protein B 2752387..2753886 Clostridium botulinum E3 str. Alaska E43 6320411 YP_001921980.1 CDS CLH_2600 NC_010723.1 2754109 2755716 R identified by match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B complement(2754109..2755716) Clostridium botulinum E3 str. Alaska E43 6317524 YP_001921981.1 CDS CLH_2601 NC_010723.1 2755726 2756694 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(2755726..2756694) Clostridium botulinum E3 str. Alaska E43 6320415 YP_001921982.1 CDS CLH_2602 NC_010723.1 2756727 2757908 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 1 complement(2756727..2757908) Clostridium botulinum E3 str. Alaska E43 6318555 YP_001921983.1 CDS CLH_2603 NC_010723.1 2757935 2760070 R cell division protein FtsA complement(2757935..2760070) Clostridium botulinum E3 str. Alaska E43 6320228 YP_001921984.1 CDS CLH_2604 NC_010723.1 2760306 2760425 R identified by glimmer; putative; hypothetical protein complement(2760306..2760425) Clostridium botulinum E3 str. Alaska E43 6319774 YP_001921985.1 CDS CLH_2605 NC_010723.1 2760599 2762605 R identified by match to protein family HMM PF00580; ATP-dependent helicase complement(2760599..2762605) Clostridium botulinum E3 str. Alaska E43 6318599 YP_001921986.1 CDS pncB NC_010723.1 2762789 2764267 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2762789..2764267 Clostridium botulinum E3 str. Alaska E43 6320483 YP_001921987.1 CDS CLH_2607 NC_010723.1 2764328 2764534 R hypothetical protein complement(2764328..2764534) Clostridium botulinum E3 str. Alaska E43 6319711 YP_001921988.1 CDS CLH_2608 NC_010723.1 2764784 2765101 R hypothetical protein complement(2764784..2765101) Clostridium botulinum E3 str. Alaska E43 6318146 YP_001921989.1 CDS CLH_2609 NC_010723.1 2765348 2765665 R hypothetical protein complement(2765348..2765665) Clostridium botulinum E3 str. Alaska E43 6317703 YP_001921990.1 CDS CLH_2610 NC_010723.1 2765928 2766353 D identified by match to protein family HMM PF01475; Fur family transcriptional regulator 2765928..2766353 Clostridium botulinum E3 str. Alaska E43 6320154 YP_001921991.1 CDS CLH_2611 NC_010723.1 2766476 2767387 D hypothetical protein 2766476..2767387 Clostridium botulinum E3 str. Alaska E43 6317469 YP_001921992.1 CDS CLH_2612 NC_010723.1 2767526 2768128 R hypothetical protein complement(2767526..2768128) Clostridium botulinum E3 str. Alaska E43 6318207 YP_001921993.1 CDS CLH_2613 NC_010723.1 2768243 2768524 R identified by glimmer; putative; hypothetical protein complement(2768243..2768524) Clostridium botulinum E3 str. Alaska E43 6318542 YP_001921994.1 CDS CLH_2614 NC_010723.1 2768557 2769093 R identified by glimmer; putative; hypothetical protein complement(2768557..2769093) Clostridium botulinum E3 str. Alaska E43 6318563 YP_001921995.1 CDS engB NC_010723.1 2769277 2769873 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(2769277..2769873) Clostridium botulinum E3 str. Alaska E43 6319448 YP_001921996.1 CDS lon NC_010723.1 2769863 2772196 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(2769863..2772196) Clostridium botulinum E3 str. Alaska E43 6318410 YP_001921997.1 CDS clpX NC_010723.1 2772527 2773816 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2772527..2773816) Clostridium botulinum E3 str. Alaska E43 6317389 YP_001921998.1 CDS clpP NC_010723.1 2773856 2774455 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2773856..2774455) Clostridium botulinum E3 str. Alaska E43 6319150 YP_001921999.1 CDS tig NC_010723.1 2774608 2775891 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2774608..2775891) Clostridium botulinum E3 str. Alaska E43 6318180 YP_001922000.1 CDS CLH_2620 NC_010723.1 2775984 2776775 R putative secreted protein complement(2775984..2776775) Clostridium botulinum E3 str. Alaska E43 6317823 YP_001922001.1 CDS CLH_2621 NC_010723.1 2776875 2777081 R identified by glimmer; putative; hypothetical protein complement(2776875..2777081) Clostridium botulinum E3 str. Alaska E43 6319977 YP_001922002.1 CDS CLH_2622 NC_010723.1 2777399 2778169 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 2777399..2778169 Clostridium botulinum E3 str. Alaska E43 6317242 YP_001922003.1 CDS hisE NC_010723.1 2778353 2778679 R identified by match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456; phosphoribosyl-ATP diphosphatase complement(2778353..2778679) Clostridium botulinum E3 str. Alaska E43 6319724 YP_001922004.1 CDS hisI NC_010723.1 2778701 2779030 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(2778701..2779030) Clostridium botulinum E3 str. Alaska E43 6318493 YP_001922005.1 CDS hisF NC_010723.1 2779148 2779909 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2779148..2779909) Clostridium botulinum E3 str. Alaska E43 6319506 YP_001922006.1 CDS hisA NC_010723.1 2779947 2780660 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2779947..2780660) Clostridium botulinum E3 str. Alaska E43 6319743 YP_001922007.1 CDS hisH NC_010723.1 2780657 2781277 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2780657..2781277) Clostridium botulinum E3 str. Alaska E43 6319688 YP_001922008.1 CDS hisB NC_010723.1 2781299 2781886 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2781299..2781886) Clostridium botulinum E3 str. Alaska E43 6319584 YP_001922009.1 CDS CLH_2629 NC_010723.1 2781876 2782928 R identified by match to protein family HMM PF00155; histidinol-phosphate aminotransferase complement(2781876..2782928) Clostridium botulinum E3 str. Alaska E43 6317594 YP_001922010.1 CDS hisD NC_010723.1 2782929 2784215 R identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase complement(2782929..2784215) Clostridium botulinum E3 str. Alaska E43 6318140 YP_001922011.1 CDS hisG NC_010723.1 2784277 2784900 R identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070; ATP phosphoribosyltransferase complement(2784277..2784900) Clostridium botulinum E3 str. Alaska E43 6318585 YP_001922012.1 CDS hisZ NC_010723.1 2784903 2786051 R identified by match to protein family HMM PF00587; match to protein family HMM TIGR00443; ATP phosphoribosyltransferase, regulatory subunit complement(2784903..2786051) Clostridium botulinum E3 str. Alaska E43 6317740 YP_001922013.1 CDS CLH_2633 NC_010723.1 2786413 2786919 R identified by match to protein family HMM PF00583; diamine acetyltransferase 1 complement(2786413..2786919) Clostridium botulinum E3 str. Alaska E43 6320158 YP_001922014.1 CDS thiI NC_010723.1 2787166 2788323 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(2787166..2788323) Clostridium botulinum E3 str. Alaska E43 6318589 YP_001922015.1 CDS CLH_2635 NC_010723.1 2788323 2789468 R identified by match to protein family HMM PF00266; cysteine desulfurase complement(2788323..2789468) Clostridium botulinum E3 str. Alaska E43 6319041 YP_001922016.1 CDS CLH_2636 NC_010723.1 2789978 2790829 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(2789978..2790829) Clostridium botulinum E3 str. Alaska E43 6319931 YP_001922017.1 CDS CLH_2637 NC_010723.1 2791187 2791624 R identified by match to protein family HMM PF01842; hypothetical protein complement(2791187..2791624) Clostridium botulinum E3 str. Alaska E43 6319904 YP_001922018.1 CDS thrB NC_010723.1 2791624 2792520 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(2791624..2792520) Clostridium botulinum E3 str. Alaska E43 6319131 YP_001922019.1 CDS thrC NC_010723.1 2792524 2793987 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2792524..2793987) Clostridium botulinum E3 str. Alaska E43 6319657 YP_001922020.1 CDS CLH_2640 NC_010723.1 2794106 2795044 R hypothetical protein complement(2794106..2795044) Clostridium botulinum E3 str. Alaska E43 6318159 YP_001922021.1 CDS CLH_2641 NC_010723.1 2795316 2796299 D lipase 2795316..2796299 Clostridium botulinum E3 str. Alaska E43 6320456 YP_001922022.1 CDS CLH_2642 NC_010723.1 2796374 2797513 R identified by match to protein family HMM PF07885; Ion channel family complement(2796374..2797513) Clostridium botulinum E3 str. Alaska E43 6318109 YP_001922023.1 CDS CLH_2643 NC_010723.1 2797583 2798140 R hypothetical protein complement(2797583..2798140) Clostridium botulinum E3 str. Alaska E43 6318927 YP_001922024.1 CDS CLH_2644 NC_010723.1 2798332 2799102 D identified by match to protein family HMM PF00561; lysophospholipase 2798332..2799102 Clostridium botulinum E3 str. Alaska E43 6319239 YP_001922025.1 CDS CLH_2645 NC_010723.1 2799282 2800079 R identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(2799282..2800079) Clostridium botulinum E3 str. Alaska E43 6317775 YP_001922026.1 CDS hemL NC_010723.1 2800069 2801352 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(2800069..2801352) Clostridium botulinum E3 str. Alaska E43 6319559 YP_001922027.1 CDS hemB NC_010723.1 2801404 2802369 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2801404..2802369) Clostridium botulinum E3 str. Alaska E43 6318627 YP_001922028.1 CDS CLH_2648 NC_010723.1 2802372 2803847 R identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase complement(2802372..2803847) Clostridium botulinum E3 str. Alaska E43 6317790 YP_001922029.1 CDS hemC NC_010723.1 2804062 2804934 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2804062..2804934) Clostridium botulinum E3 str. Alaska E43 6320067 YP_001922030.1 CDS CLH_2650 NC_010723.1 2804986 2805660 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(2804986..2805660) Clostridium botulinum E3 str. Alaska E43 6317509 YP_001922031.1 CDS hemA NC_010723.1 2805618 2806823 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(2805618..2806823) Clostridium botulinum E3 str. Alaska E43 6320533 YP_001922032.1 CDS CLH_2652 NC_010723.1 2807244 2808101 R identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; anaerobic sulfite reductase subunit C complement(2807244..2808101) Clostridium botulinum E3 str. Alaska E43 6319660 YP_001922033.1 CDS CLH_2653 NC_010723.1 2808459 2809100 D identified by match to protein family HMM PF01255; undecaprenyl pyrophosphate synthetase 2808459..2809100 Clostridium botulinum E3 str. Alaska E43 6317533 YP_001922034.1 CDS CLH_2654 NC_010723.1 2809878 2811230 R identified by match to protein family HMM PF00209; sodium transporter family protein complement(2809878..2811230) Clostridium botulinum E3 str. Alaska E43 6318326 YP_001922035.1 CDS metA NC_010723.1 2811563 2812483 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(2811563..2812483) Clostridium botulinum E3 str. Alaska E43 6319060 YP_001922036.1 CDS CLH_2656 NC_010723.1 2812853 2813911 D hypothetical protein 2812853..2813911 Clostridium botulinum E3 str. Alaska E43 6318138 YP_001922037.1 CDS CLH_2657 NC_010723.1 2814024 2814833 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YidA complement(2814024..2814833) Clostridium botulinum E3 str. Alaska E43 6318124 YP_001922038.1 CDS CLH_2658 NC_010723.1 2815087 2815710 D identified by match to protein family HMM TIGR02840; putative sporulation protein YtaF 2815087..2815710 Clostridium botulinum E3 str. Alaska E43 6320079 YP_001922039.1 CDS cobQ NC_010723.1 2815892 2817397 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2815892..2817397) Clostridium botulinum E3 str. Alaska E43 6317541 YP_001922040.1 CDS CLH_2660 NC_010723.1 2817449 2818102 R identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290; protein containing ATP-binding domain complement(2817449..2818102) Clostridium botulinum E3 str. Alaska E43 6319187 YP_001922041.1 CDS CLH_2661 NC_010723.1 2818164 2819246 R cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase complement(2818164..2819246) Clostridium botulinum E3 str. Alaska E43 6317626 YP_001922042.1 CDS cobD NC_010723.1 2819239 2820189 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2819239..2820189) Clostridium botulinum E3 str. Alaska E43 6318200 YP_001922043.1 CDS CLH_2663 NC_010723.1 2820308 2820916 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(2820308..2820916) Clostridium botulinum E3 str. Alaska E43 6317657 YP_001922044.1 CDS CLH_2664 NC_010723.1 2820909 2821322 R hypothetical protein complement(2820909..2821322) Clostridium botulinum E3 str. Alaska E43 6319419 YP_001922045.1 CDS cobS NC_010723.1 2821438 2822196 R identified by match to protein family HMM PF02654; cobalamin-5-phosphate synthase complement(2821438..2822196) Clostridium botulinum E3 str. Alaska E43 6318764 YP_001922046.1 CDS CLH_2666 NC_010723.1 2822205 2822759 R hypothetical protein complement(2822205..2822759) Clostridium botulinum E3 str. Alaska E43 6319400 YP_001922047.1 CDS CLH_2667 NC_010723.1 2822761 2823291 R identified by match to protein family HMM PF02572; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP complement(2822761..2823291) Clostridium botulinum E3 str. Alaska E43 6317455 YP_001922048.1 CDS CLH_2668 NC_010723.1 2823564 2825135 R identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/carnitine/choline transport system permease protein opucb complement(2823564..2825135) Clostridium botulinum E3 str. Alaska E43 6317415 YP_001922049.1 CDS CLH_2669 NC_010723.1 2825137 2826264 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline ABC transporter ATP-binding protein complement(2825137..2826264) Clostridium botulinum E3 str. Alaska E43 6318154 YP_001922050.1 CDS CLH_2670 NC_010723.1 2826367 2826996 R identified by match to protein family HMM PF00392; match to protein family HMM PF02080; GntR family transcriptional regulator complement(2826367..2826996) Clostridium botulinum E3 str. Alaska E43 6319732 YP_001922051.1 CDS CLH_2671 NC_010723.1 2827199 2827684 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative thiol peroxidase complement(2827199..2827684) Clostridium botulinum E3 str. Alaska E43 6317429 YP_001922052.1 CDS CLH_2672 NC_010723.1 2827848 2828180 D hypothetical protein 2827848..2828180 Clostridium botulinum E3 str. Alaska E43 6317315 YP_001922053.1 CDS CLH_2673 NC_010723.1 2828182 2828733 R identified by glimmer; putative; hypothetical protein complement(2828182..2828733) Clostridium botulinum E3 str. Alaska E43 6318799 YP_001922054.1 CDS cobT NC_010723.1 2828935 2830026 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2828935..2830026) Clostridium botulinum E3 str. Alaska E43 6318550 YP_001922055.1 CDS cobK NC_010723.1 2830511 2831275 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(2830511..2831275) Clostridium botulinum E3 str. Alaska E43 6319781 YP_001922056.1 CDS cobJ NC_010723.1 2831275 2832012 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2831275..2832012) Clostridium botulinum E3 str. Alaska E43 6319295 YP_001922057.1 CDS CLH_2677 NC_010723.1 2832031 2833092 R identified by match to protein family HMM PF01890; CbiG protein complement(2832031..2833092) Clostridium botulinum E3 str. Alaska E43 6320266 YP_001922058.1 CDS cobM NC_010723.1 2833089 2833847 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2833089..2833847) Clostridium botulinum E3 str. Alaska E43 6318533 YP_001922059.1 CDS cobI NC_010723.1 2834035 2834697 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2834035..2834697) Clostridium botulinum E3 str. Alaska E43 6319093 YP_001922060.1 CDS CLH_2680 NC_010723.1 2834699 2835277 R identified by match to protein family HMM TIGR02469; putative cobalt-precorrin-6Y C(15)-methyltransferase complement(2834699..2835277) Clostridium botulinum E3 str. Alaska E43 6317325 YP_001922061.1 CDS cbiE NC_010723.1 2835290 2835892 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2835290..2835892) Clostridium botulinum E3 str. Alaska E43 6318137 YP_001922062.1 CDS cbiD NC_010723.1 2835900 2837045 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2835900..2837045) Clostridium botulinum E3 str. Alaska E43 6317346 YP_001922063.1 CDS cbiC NC_010723.1 2837193 2837816 R catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase complement(2837193..2837816) Clostridium botulinum E3 str. Alaska E43 6317350 YP_001922064.1 CDS cobB NC_010723.1 2837964 2839280 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2837964..2839280) Clostridium botulinum E3 str. Alaska E43 6319814 YP_001922065.1 CDS CLH_2685 NC_010723.1 2839470 2840306 R identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(2839470..2840306) Clostridium botulinum E3 str. Alaska E43 6318553 YP_001922066.1 CDS CLH_2686 NC_010723.1 2841127 2841663 D hypothetical protein 2841127..2841663 Clostridium botulinum E3 str. Alaska E43 6319344 YP_001922067.1 CDS CLH_2687 NC_010723.1 2841746 2843059 R identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein complement(2841746..2843059) Clostridium botulinum E3 str. Alaska E43 6318575 YP_001922068.1 CDS CLH_2688 NC_010723.1 2843328 2843492 R hypothetical protein complement(2843328..2843492) Clostridium botulinum E3 str. Alaska E43 6320029 YP_001922069.1 CDS CLH_2690 NC_010723.1 2844145 2844261 D identified by glimmer; putative; hypothetical protein 2844145..2844261 Clostridium botulinum E3 str. Alaska E43 6318998 YP_001922070.1 CDS CLH_2691 NC_010723.1 2844411 2845364 R identified by match to protein family HMM PF00294; fructokinase complement(2844411..2845364) Clostridium botulinum E3 str. Alaska E43 6318679 YP_001922071.1 CDS CLH_2692 NC_010723.1 2845460 2845786 R identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(2845460..2845786) Clostridium botulinum E3 str. Alaska E43 6319953 YP_001922072.1 CDS CLH_2693 NC_010723.1 2845828 2846877 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; sorbitol dehydrogenase complement(2845828..2846877) Clostridium botulinum E3 str. Alaska E43 6320270 YP_001922073.1 CDS CLH_2694 NC_010723.1 2847057 2848178 R identified by match to protein family HMM PF02378; phosphotransferase system, EIIC complement(2847057..2848178) Clostridium botulinum E3 str. Alaska E43 6319594 YP_001922074.1 CDS CLH_2695 NC_010723.1 2848488 2849615 R identified by match to protein family HMM PF00480; ROK family protein complement(2848488..2849615) Clostridium botulinum E3 str. Alaska E43 6318446 YP_001922075.1 CDS CLH_2696 NC_010723.1 2849886 2850377 D identified by match to protein family HMM PF00258; flavodoxin 2849886..2850377 Clostridium botulinum E3 str. Alaska E43 6318519 YP_001922076.1 CDS CLH_2697 NC_010723.1 2850512 2850979 R identified by match to protein family HMM PF04509; CheX protein complement(2850512..2850979) Clostridium botulinum E3 str. Alaska E43 6318559 YP_001922077.1 CDS CLH_2698 NC_010723.1 2850961 2851836 R identified by match to protein family HMM PF00072; putative chemotaxis sensory transduction protein complement(2850961..2851836) Clostridium botulinum E3 str. Alaska E43 6318841 YP_001922078.1 CDS CLH_2699 NC_010723.1 2852014 2852154 R identified by glimmer; putative; hypothetical protein complement(2852014..2852154) Clostridium botulinum E3 str. Alaska E43 6320354 YP_001922079.1 CDS CLH_2700 NC_010723.1 2852463 2853731 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease complement(2852463..2853731) Clostridium botulinum E3 str. Alaska E43 6318426 YP_001922080.1 CDS CLH_2701 NC_010723.1 2854151 2854933 R identified by match to protein family HMM PF00959; match to protein family HMM PF01473; putative phage lysozyme complement(2854151..2854933) Clostridium botulinum E3 str. Alaska E43 6320006 YP_001922081.1 CDS CLH_2702 NC_010723.1 2855206 2856069 R identified by match to protein family HMM PF00753; beta-lactamase complement(2855206..2856069) Clostridium botulinum E3 str. Alaska E43 6317880 YP_001922082.1 CDS CLH_2703 NC_010723.1 2856086 2856919 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2856086..2856919) Clostridium botulinum E3 str. Alaska E43 6318456 YP_001922083.1 CDS CLH_2704 NC_010723.1 2857305 2859140 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; lipid A export ATP-binding/permease protein MsbA complement(2857305..2859140) Clostridium botulinum E3 str. Alaska E43 6319034 YP_001922084.1 CDS CLH_2705 NC_010723.1 2859133 2861364 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease complement(2859133..2861364) Clostridium botulinum E3 str. Alaska E43 6318364 YP_001922085.1 CDS CLH_2706 NC_010723.1 2861649 2862104 D identified by match to protein family HMM PF01047; transcriptional regulator, MarR family 2861649..2862104 Clostridium botulinum E3 str. Alaska E43 6319702 YP_003264529.1 CDS CLH_2708 NC_010723.1 2863032 2863994 R ribulokinase complement(2863032..2863994) Clostridium botulinum E3 str. Alaska E43 8538025 YP_001922086.1 CDS CLH_2709 NC_010723.1 2864218 2866413 R identified by match to protein family HMM PF00465; match to protein family HMM PF00702; match to protein family HMM PF01761; match to protein family HMM TIGR01460; glycerol-1-phosphate dehydrogenase complement(2864218..2866413) Clostridium botulinum E3 str. Alaska E43 6319374 YP_001922087.1 CDS CLH_2710 NC_010723.1 2867065 2868165 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; putative transcriptional regulator 2867065..2868165 Clostridium botulinum E3 str. Alaska E43 6320577 YP_001922088.1 CDS CLH_2711 NC_010723.1 2868725 2869507 D identified by match to protein family HMM PF02535; zinc transporter ZupT 2868725..2869507 Clostridium botulinum E3 str. Alaska E43 6319935 YP_001922089.1 CDS CLH_2712 NC_010723.1 2869769 2870545 R galactose-1-phosphate uridylyltransferase complement(2869769..2870545) Clostridium botulinum E3 str. Alaska E43 6319808 YP_001922090.1 CDS CLH_2713 NC_010723.1 2870862 2871944 D identified by match to protein family HMM PF06207; hypothetical protein 2870862..2871944 Clostridium botulinum E3 str. Alaska E43 6320348 YP_001922091.1 CDS CLH_2714 NC_010723.1 2872063 2872536 D identified by glimmer; putative; hypothetical protein 2872063..2872536 Clostridium botulinum E3 str. Alaska E43 6317835 YP_001922092.1 CDS CLH_2715 NC_010723.1 2872608 2873282 R identified by match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite reductase, assimilatory-type complement(2872608..2873282) Clostridium botulinum E3 str. Alaska E43 6319258 YP_001922093.1 CDS CLH_2716 NC_010723.1 2873315 2873662 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family protein complement(2873315..2873662) Clostridium botulinum E3 str. Alaska E43 6318767 YP_001922094.1 CDS CLH_2717 NC_010723.1 2873886 2874431 R hypothetical protein complement(2873886..2874431) Clostridium botulinum E3 str. Alaska E43 6317911 YP_001922095.1 CDS CLH_2718 NC_010723.1 2874806 2875696 R identified by match to protein family HMM PF04018; hypothetical protein complement(2874806..2875696) Clostridium botulinum E3 str. Alaska E43 6318423 YP_001922096.1 CDS CLH_2719 NC_010723.1 2875978 2876136 R hypothetical protein complement(2875978..2876136) Clostridium botulinum E3 str. Alaska E43 6319832 YP_001922097.1 CDS CLH_2720 NC_010723.1 2876505 2877350 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 2876505..2877350 Clostridium botulinum E3 str. Alaska E43 6317774 YP_001922098.1 CDS deoD NC_010723.1 2877481 2878191 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(2877481..2878191) Clostridium botulinum E3 str. Alaska E43 6318845 YP_001922099.1 CDS cdd NC_010723.1 2878246 2878653 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(2878246..2878653) Clostridium botulinum E3 str. Alaska E43 6317240 YP_001922100.1 CDS CLH_2723 NC_010723.1 2878867 2879820 R identified by match to protein family HMM PF02653; ABC transporter permease complement(2878867..2879820) Clostridium botulinum E3 str. Alaska E43 6317695 YP_001922101.1 CDS CLH_2724 NC_010723.1 2879822 2880976 R identified by match to protein family HMM PF02653; ABC transporter permease complement(2879822..2880976) Clostridium botulinum E3 str. Alaska E43 6320024 YP_001922102.1 CDS CLH_2725 NC_010723.1 2880973 2882496 R identified by match to protein family HMM PF00005; galactose/methyl galactoside import ATP-binding protein MglA complement(2880973..2882496) Clostridium botulinum E3 str. Alaska E43 6320203 YP_001922103.1 CDS CLH_2726 NC_010723.1 2882739 2883842 R identified by match to protein family HMM PF02608; membrane lipoprotein tmpc complement(2882739..2883842) Clostridium botulinum E3 str. Alaska E43 6319920 YP_001922104.1 CDS CLH_2727 NC_010723.1 2884015 2885034 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator complement(2884015..2885034) Clostridium botulinum E3 str. Alaska E43 6318288 YP_001922105.1 CDS CLH_2728 NC_010723.1 2885769 2886938 R identified by match to protein family HMM PF00155; aspartate aminotransferase complement(2885769..2886938) Clostridium botulinum E3 str. Alaska E43 6320312 YP_001922106.1 CDS CLH_2729 NC_010723.1 2886935 2887414 R identified by match to protein family HMM PF01037; transcriptional regulator, AsnC family complement(2886935..2887414) Clostridium botulinum E3 str. Alaska E43 6319751 YP_001922107.1 CDS pulA NC_010723.1 2888167 2890122 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase complement(2888167..2890122) Clostridium botulinum E3 str. Alaska E43 6317599 YP_001922108.1 CDS CLH_2731 NC_010723.1 2890480 2890593 R identified by glimmer; putative; hypothetical protein complement(2890480..2890593) Clostridium botulinum E3 str. Alaska E43 6318625 YP_001922109.1 CDS CLH_2732 NC_010723.1 2890620 2892116 R identified by match to protein family HMM PF00209; sodium/proline symporter complement(2890620..2892116) Clostridium botulinum E3 str. Alaska E43 6318172 YP_001922110.1 CDS CLH_2733 NC_010723.1 2892355 2892642 D identified by glimmer; putative; hypothetical protein 2892355..2892642 Clostridium botulinum E3 str. Alaska E43 6320464 YP_001922111.1 CDS CLH_2734 NC_010723.1 2892952 2894376 R identified by match to protein family HMM PF01276; match to protein family HMM PF03711; arginine/lysine decarboxylase complement(2892952..2894376) Clostridium botulinum E3 str. Alaska E43 6320594 YP_001922112.1 CDS CLH_2735 NC_010723.1 2894625 2895830 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; zinc protease complement(2894625..2895830) Clostridium botulinum E3 str. Alaska E43 6318982 YP_001922113.1 CDS CLH_2736 NC_010723.1 2896193 2897872 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; Methyl-accepting chemotaxis protein complement(2896193..2897872) Clostridium botulinum E3 str. Alaska E43 6320022 YP_001922114.1 CDS CLH_2737 NC_010723.1 2898200 2899555 R identified by match to protein family HMM PF04055; heme biosynthesis complement(2898200..2899555) Clostridium botulinum E3 str. Alaska E43 6320168 YP_001922115.1 CDS CLH_2738 NC_010723.1 2899627 2899764 R hypothetical protein complement(2899627..2899764) Clostridium botulinum E3 str. Alaska E43 6317581 YP_001922116.1 CDS CLH_2739 NC_010723.1 2900072 2902000 R molecular chaperone; heat shock protein 90 complement(2900072..2902000) Clostridium botulinum E3 str. Alaska E43 6318136 YP_001922117.1 CDS CLH_2740 NC_010723.1 2902201 2905743 R identified by match to protein family HMM PF02463; exonuclease SbcC complement(2902201..2905743) Clostridium botulinum E3 str. Alaska E43 6319443 YP_001922118.1 CDS CLH_2741 NC_010723.1 2905730 2906950 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; DNA repair exonuclease complement(2905730..2906950) Clostridium botulinum E3 str. Alaska E43 6317482 YP_001922119.1 CDS CLH_2742 NC_010723.1 2906964 2907521 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2906964..2907521) Clostridium botulinum E3 str. Alaska E43 6319898 YP_001922120.1 CDS CLH_2743 NC_010723.1 2908042 2909088 D identified by match to protein family HMM PF02698; integral membrane protein 2908042..2909088 Clostridium botulinum E3 str. Alaska E43 6319021 YP_001922121.1 CDS surE NC_010723.1 2909284 2910039 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2909284..2910039) Clostridium botulinum E3 str. Alaska E43 6318540 YP_001922122.1 CDS CLH_2745 NC_010723.1 2910458 2912386 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 2910458..2912386 Clostridium botulinum E3 str. Alaska E43 6319912 YP_001922123.1 CDS CLH_2746 NC_010723.1 2912507 2914186 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(2912507..2914186) Clostridium botulinum E3 str. Alaska E43 6317583 YP_001922124.1 CDS CLH_2747 NC_010723.1 2914644 2915282 D hypothetical protein 2914644..2915282 Clostridium botulinum E3 str. Alaska E43 6319469 YP_001922125.1 CDS CLH_2748 NC_010723.1 2915433 2916227 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YidA complement(2915433..2916227) Clostridium botulinum E3 str. Alaska E43 6319243 YP_001922126.1 CDS CLH_2749 NC_010723.1 2916381 2917358 R identified by match to protein family HMM TIGR01921; diaminopimelate dehydrogenase complement(2916381..2917358) Clostridium botulinum E3 str. Alaska E43 6318152 YP_001922127.1 CDS CLH_2750 NC_010723.1 2917623 2917754 R identified by glimmer; putative; hypothetical protein complement(2917623..2917754) Clostridium botulinum E3 str. Alaska E43 6319259 YP_001922128.1 CDS CLH_2751 NC_010723.1 2917878 2918969 D identified by match to protein family HMM PF00294; match to protein family HMM PF08279; sugar kinase, ribokinase family 2917878..2918969 Clostridium botulinum E3 str. Alaska E43 6320267 YP_001922129.1 CDS CLH_2752 NC_010723.1 2919121 2920272 R identified by match to protein family HMM PF00465; alcohol dehydrogenase complement(2919121..2920272) Clostridium botulinum E3 str. Alaska E43 6317462 YP_001922130.1 CDS trpF NC_010723.1 2920363 2921055 R identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase complement(2920363..2921055) Clostridium botulinum E3 str. Alaska E43 6320596 YP_001922131.1 CDS CLH_2754 NC_010723.1 2921060 2922004 R identified by match to protein family HMM PF00294; kinase, pfkB family complement(2921060..2922004) Clostridium botulinum E3 str. Alaska E43 6318618 YP_001922132.1 CDS CLH_2755 NC_010723.1 2922425 2923357 R identified by glimmer; putative; hypothetical protein complement(2922425..2923357) Clostridium botulinum E3 str. Alaska E43 6317508 YP_001922133.1 CDS CLH_2756 NC_010723.1 2923394 2923978 R identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor complement(2923394..2923978) Clostridium botulinum E3 str. Alaska E43 6319725 YP_001922134.1 CDS CLH_2757 NC_010723.1 2924284 2924919 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphatase complement(2924284..2924919) Clostridium botulinum E3 str. Alaska E43 6317373 YP_001922135.1 CDS CLH_2758 NC_010723.1 2924969 2925952 R identified by match to protein family HMM PF00480; putative ROK family protein complement(2924969..2925952) Clostridium botulinum E3 str. Alaska E43 6318027 YP_001922136.1 CDS CLH_2759 NC_010723.1 2926176 2926994 R identified by glimmer; putative; hypothetical protein complement(2926176..2926994) Clostridium botulinum E3 str. Alaska E43 6318403 YP_001922137.1 CDS CLH_2760 NC_010723.1 2927206 2928663 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory transduction histidine kinase complement(2927206..2928663) Clostridium botulinum E3 str. Alaska E43 6318924 YP_001922138.1 CDS CLH_2761 NC_010723.1 2928669 2929325 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator complement(2928669..2929325) Clostridium botulinum E3 str. Alaska E43 6318171 YP_001922139.1 CDS CLH_2762 NC_010723.1 2929590 2930876 R identified by match to protein family HMM PF04231; extracellular ribonuclease complement(2929590..2930876) Clostridium botulinum E3 str. Alaska E43 6318690 YP_001922140.1 CDS CLH_2763 NC_010723.1 2931175 2932161 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(2931175..2932161) Clostridium botulinum E3 str. Alaska E43 6317618 YP_001922141.1 CDS CLH_2764 NC_010723.1 2932209 2933240 R pts system, fructose-specific iibc component complement(2932209..2933240) Clostridium botulinum E3 str. Alaska E43 6320141 YP_001922142.1 CDS CLH_2765 NC_010723.1 2933363 2934163 R identified by match to protein family HMM PF00376; match to protein family HMM PF09278; putative regulator of efflux transporter complement(2933363..2934163) Clostridium botulinum E3 str. Alaska E43 6317975 YP_001922143.1 CDS CLH_2766 NC_010723.1 2934489 2934605 R identified by glimmer; putative; hypothetical protein complement(2934489..2934605) Clostridium botulinum E3 str. Alaska E43 6318312 YP_001922144.1 CDS CLH_2767 NC_010723.1 2934562 2935251 R radical SAM domain protein complement(2934562..2935251) Clostridium botulinum E3 str. Alaska E43 6319298 YP_001922145.1 CDS CLH_2768 NC_010723.1 2935238 2935813 R integral membrane protein complement(2935238..2935813) Clostridium botulinum E3 str. Alaska E43 6317680 YP_001922146.1 CDS CLH_2769 NC_010723.1 2935969 2936949 R identified by match to protein family HMM PF01156; nucleoside hydrolase, IUNH family complement(2935969..2936949) Clostridium botulinum E3 str. Alaska E43 6317554 YP_001922147.1 CDS CLH_2770 NC_010723.1 2937487 2938368 R identified by match to protein family HMM PF00892; transporter complement(2937487..2938368) Clostridium botulinum E3 str. Alaska E43 6320357 YP_001922148.1 CDS nadC NC_010723.1 2939180 2940019 R identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide diphosphorylase (carboxylating) complement(2939180..2940019) Clostridium botulinum E3 str. Alaska E43 6318612 YP_001922149.1 CDS CLH_2772 NC_010723.1 2939997 2941310 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(2939997..2941310) Clostridium botulinum E3 str. Alaska E43 6318482 YP_001922150.1 CDS nadA NC_010723.1 2941316 2942227 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2941316..2942227) Clostridium botulinum E3 str. Alaska E43 6317909 YP_001922151.1 CDS CLH_2774 NC_010723.1 2942548 2943090 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 2942548..2943090 Clostridium botulinum E3 str. Alaska E43 6318287 YP_001922152.1 CDS CLH_2775 NC_010723.1 2943231 2943548 D identified by match to protein family HMM PF07561; hypothetical protein 2943231..2943548 Clostridium botulinum E3 str. Alaska E43 6319683 YP_001922153.1 CDS CLH_2776 NC_010723.1 2943850 2944476 D identified by glimmer; putative; hypothetical protein 2943850..2944476 Clostridium botulinum E3 str. Alaska E43 6318971 YP_001922154.1 CDS CLH_2777 NC_010723.1 2944697 2944870 R identified by glimmer; putative; hypothetical protein complement(2944697..2944870) Clostridium botulinum E3 str. Alaska E43 6319801 YP_001922155.1 CDS feoB NC_010723.1 2944942 2947086 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(2944942..2947086) Clostridium botulinum E3 str. Alaska E43 6320477 YP_001922156.1 CDS CLH_2779 NC_010723.1 2947159 2947380 R identified by match to protein family HMM PF04023; hypothetical protein complement(2947159..2947380) Clostridium botulinum E3 str. Alaska E43 6318676 YP_001922157.1 CDS CLH_2780 NC_010723.1 2947394 2947603 R identified by match to protein family HMM PF04023; hypothetical protein complement(2947394..2947603) Clostridium botulinum E3 str. Alaska E43 6319892 YP_001922158.1 CDS CLH_2781 NC_010723.1 2948027 2949361 R CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide; coenzyme A disulfide reductase complement(2948027..2949361) Clostridium botulinum E3 str. Alaska E43 6320017 YP_001922159.1 CDS CLH_2782 NC_010723.1 2949977 2950606 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; hydrolase complement(2949977..2950606) Clostridium botulinum E3 str. Alaska E43 6317486 YP_001922160.1 CDS CLH_2783 NC_010723.1 2950935 2952248 D identified by match to protein family HMM PF04055; radical SAM 2950935..2952248 Clostridium botulinum E3 str. Alaska E43 6318440 YP_001922161.1 CDS CLH_2784 NC_010723.1 2952251 2952991 D hypothetical protein 2952251..2952991 Clostridium botulinum E3 str. Alaska E43 6319151 YP_001922162.1 CDS CLH_2785 NC_010723.1 2953132 2955147 R identified by match to protein family HMM PF01431; match to protein family HMM PF05649; endopeptidase O complement(2953132..2955147) Clostridium botulinum E3 str. Alaska E43 6318447 YP_001922163.1 CDS CLH_2786 NC_010723.1 2955385 2957076 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis sensory transducer complement(2955385..2957076) Clostridium botulinum E3 str. Alaska E43 6319900 YP_001922164.1 CDS CLH_2787 NC_010723.1 2957334 2957501 D hypothetical protein 2957334..2957501 Clostridium botulinum E3 str. Alaska E43 6319676 YP_001922165.1 CDS CLH_2788 NC_010723.1 2957517 2957768 D spore coat protein CotJB 2957517..2957768 Clostridium botulinum E3 str. Alaska E43 6317472 YP_001922166.1 CDS CLH_2789 NC_010723.1 2957783 2958346 D identified by match to protein family HMM PF05067; protein cotJC 2957783..2958346 Clostridium botulinum E3 str. Alaska E43 6319745 YP_001922167.1 CDS asrC NC_010723.1 2958498 2959463 R identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C complement(2958498..2959463) Clostridium botulinum E3 str. Alaska E43 6317535 YP_001922168.1 CDS asrB NC_010723.1 2959476 2960270 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(2959476..2960270) Clostridium botulinum E3 str. Alaska E43 6318382 YP_001922169.1 CDS asrA NC_010723.1 2960263 2961273 R identified by match to protein family HMM TIGR02910; sulfite reductase subunit A complement(2960263..2961273) Clostridium botulinum E3 str. Alaska E43 6318378 YP_001922170.1 CDS CLH_2793 NC_010723.1 2961288 2962055 R identified by match to protein family HMM PF01226; formate/nitrite family of transporter complement(2961288..2962055) Clostridium botulinum E3 str. Alaska E43 6318230 YP_001922171.1 CDS CLH_2794 NC_010723.1 2962149 2962601 R identified by match to protein family HMM PF00325; CarD family transcriptional regulator complement(2962149..2962601) Clostridium botulinum E3 str. Alaska E43 6319534 YP_001922172.1 CDS CLH_2795 NC_010723.1 2962624 2962866 D identified by glimmer; putative; hypothetical protein 2962624..2962866 Clostridium botulinum E3 str. Alaska E43 6317454 YP_001922173.1 CDS CLH_2796 NC_010723.1 2962903 2963856 R identified by match to protein family HMM TIGR01764; periplasmic molybdate-binding protein/domain complement(2962903..2963856) Clostridium botulinum E3 str. Alaska E43 6318630 YP_001922174.1 CDS modA NC_010723.1 2964121 2964942 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein 2964121..2964942 Clostridium botulinum E3 str. Alaska E43 6319890 YP_001922175.1 CDS modB NC_010723.1 2964965 2965648 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 2964965..2965648 Clostridium botulinum E3 str. Alaska E43 6318810 YP_001922176.1 CDS CLH_2799 NC_010723.1 2965650 2966699 D identified by match to protein family HMM PF00005; putrescine transport ATP-binding protein PotG 2965650..2966699 Clostridium botulinum E3 str. Alaska E43 6318766 YP_001922177.1 CDS gltA NC_010723.1 2966899 2968290 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(2966899..2968290) Clostridium botulinum E3 str. Alaska E43 6320562 YP_001922178.1 CDS gltD NC_010723.1 2968290 2969177 R identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha complement(2968290..2969177) Clostridium botulinum E3 str. Alaska E43 6319473 YP_001922179.1 CDS smpB NC_010723.1 2969489 2969959 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2969489..2969959) Clostridium botulinum E3 str. Alaska E43 6317958 YP_001922180.1 CDS rnr NC_010723.1 2970135 2972375 R identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R complement(2970135..2972375) Clostridium botulinum E3 str. Alaska E43 6318652 YP_001922181.1 CDS hppA NC_010723.1 2972599 2974626 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(2972599..2974626) Clostridium botulinum E3 str. Alaska E43 6318134 YP_001922182.1 CDS secG NC_010723.1 2975096 2975329 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(2975096..2975329) Clostridium botulinum E3 str. Alaska E43 6319552 YP_001922183.1 CDS eno NC_010723.1 2975610 2976905 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2975610..2976905) Clostridium botulinum E3 str. Alaska E43 6318531 YP_001922184.1 CDS CLH_2807 NC_010723.1 2977213 2977797 R hypothetical protein complement(2977213..2977797) Clostridium botulinum E3 str. Alaska E43 6318334 YP_001922185.1 CDS gpmI NC_010723.1 2978051 2979589 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(2978051..2979589) Clostridium botulinum E3 str. Alaska E43 6318631 YP_001922186.1 CDS CLH_2809 NC_010723.1 2979956 2980504 R viral A-type inclusion protein repeat containing protein complement(2979956..2980504) Clostridium botulinum E3 str. Alaska E43 6319252 YP_001922187.1 CDS CLH_2810 NC_010723.1 2980603 2981205 R identified by match to protein family HMM PF01966; metal dependent phosphohydrolase complement(2980603..2981205) Clostridium botulinum E3 str. Alaska E43 6319648 YP_001922188.1 CDS CLH_2811 NC_010723.1 2981477 2982541 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2981477..2982541 Clostridium botulinum E3 str. Alaska E43 6318110 YP_001922189.1 CDS tpiA NC_010723.1 2982647 2983393 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(2982647..2983393) Clostridium botulinum E3 str. Alaska E43 6318079 YP_001922190.1 CDS pgk NC_010723.1 2983517 2984707 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(2983517..2984707) Clostridium botulinum E3 str. Alaska E43 6319479 YP_001922191.1 CDS gap NC_010723.1 2984824 2985840 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2984824..2985840) Clostridium botulinum E3 str. Alaska E43 6320579 YP_001922192.1 CDS CLH_2815 NC_010723.1 2985913 2986944 R identified by match to protein family HMM PF04198; transcriptional regulator complement(2985913..2986944) Clostridium botulinum E3 str. Alaska E43 6317466 YP_001922193.1 CDS rpoN NC_010723.1 2987184 2988566 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(2987184..2988566) Clostridium botulinum E3 str. Alaska E43 6319756 YP_001922194.1 CDS CLH_2817 NC_010723.1 2988808 2989644 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(2988808..2989644) Clostridium botulinum E3 str. Alaska E43 6319948 YP_001922195.1 CDS CLH_2818 NC_010723.1 2989663 2990124 R identified by match to protein family HMM PF00588; tRNA/rRNA methyltransferase complement(2989663..2990124) Clostridium botulinum E3 str. Alaska E43 6319124 YP_001922196.1 CDS CLH_2819 NC_010723.1 2990370 2991881 R identified by match to protein family HMM PF04294; match to protein family HMM PF07501; vancomycin B-type resistance protein VanW complement(2990370..2991881) Clostridium botulinum E3 str. Alaska E43 6318777 YP_001922197.1 CDS CLH_2820 NC_010723.1 2992106 2993047 R identified by match to protein family HMM PF01183; muramidase complement(2992106..2993047) Clostridium botulinum E3 str. Alaska E43 6320263 YP_001922198.1 CDS CLH_2821 NC_010723.1 2993132 2994655 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor kinase complement(2993132..2994655) Clostridium botulinum E3 str. Alaska E43 6319708 YP_001922199.1 CDS CLH_2822 NC_010723.1 2994645 2995355 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; regulatory protein VanR complement(2994645..2995355) Clostridium botulinum E3 str. Alaska E43 6319466 YP_001922200.1 CDS ddl NC_010723.1 2995803 2996708 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(2995803..2996708) Clostridium botulinum E3 str. Alaska E43 6317428 YP_001922201.1 CDS nth NC_010723.1 2997016 2997642 R identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(2997016..2997642) Clostridium botulinum E3 str. Alaska E43 6318291 YP_001922202.1 CDS CLH_2825 NC_010723.1 2997661 2998365 R identified by match to protein family HMM PF01553; sn-glycerol-3-phosphate acyltransferase complement(2997661..2998365) Clostridium botulinum E3 str. Alaska E43 6319870 YP_001922203.1 CDS CLH_2826 NC_010723.1 2998412 2999413 R identified by match to protein family HMM PF08331; iron-sulfur cluster-binding protein complement(2998412..2999413) Clostridium botulinum E3 str. Alaska E43 6319216 YP_001922204.1 CDS cysE NC_010723.1 2999425 3000009 R identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase complement(2999425..3000009) Clostridium botulinum E3 str. Alaska E43 6320170 YP_001922205.1 CDS cysK NC_010723.1 3000123 3001034 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(3000123..3001034) Clostridium botulinum E3 str. Alaska E43 6319695 YP_001922206.1 CDS CLH_2829 NC_010723.1 3001688 3002938 R identified by match to protein family HMM PF00571; match to protein family HMM PF03448; hypothetical protein complement(3001688..3002938) Clostridium botulinum E3 str. Alaska E43 6317903 YP_001922207.1 CDS CLH_2830 NC_010723.1 3003794 3005842 D identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein 3003794..3005842 Clostridium botulinum E3 str. Alaska E43 6318596 YP_001922208.1 CDS CLH_2831 NC_010723.1 3005980 3006636 R hypothetical protein complement(3005980..3006636) Clostridium botulinum E3 str. Alaska E43 6320049 YP_001922209.1 CDS CLH_2832 NC_010723.1 3006723 3007601 R similar to YegS from E. coli; putative lipid kinase complement(3006723..3007601) Clostridium botulinum E3 str. Alaska E43 6319633 YP_001922210.1 CDS pssA NC_010723.1 3007820 3008341 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 3007820..3008341 Clostridium botulinum E3 str. Alaska E43 6319137 YP_001922211.1 CDS CLH_2834 NC_010723.1 3008404 3008763 R hypothetical protein complement(3008404..3008763) Clostridium botulinum E3 str. Alaska E43 6319762 YP_001922212.1 CDS CLH_2835 NC_010723.1 3009062 3009460 R identified by glimmer; putative; hypothetical protein complement(3009062..3009460) Clostridium botulinum E3 str. Alaska E43 6318548 YP_001922213.1 CDS CLH_2836 NC_010723.1 3009475 3010020 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin complement(3009475..3010020) Clostridium botulinum E3 str. Alaska E43 6318348 YP_001922214.1 CDS CLH_2837 NC_010723.1 3010216 3011586 R identified by match to protein family HMM PF04293; stage V sporulation protein R complement(3010216..3011586) Clostridium botulinum E3 str. Alaska E43 6319007 YP_001922215.1 CDS yhbH NC_010723.1 3011591 3012766 R identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877; hypothetical protein complement(3011591..3012766) Clostridium botulinum E3 str. Alaska E43 6319914 YP_001922216.1 CDS CLH_2839 NC_010723.1 3012775 3014697 R identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase complement(3012775..3014697) Clostridium botulinum E3 str. Alaska E43 6317833 YP_001922217.1 CDS CLH_2840 NC_010723.1 3014823 3014939 R identified by glimmer; putative; hypothetical protein complement(3014823..3014939) Clostridium botulinum E3 str. Alaska E43 6319806 YP_001922218.1 CDS recQ NC_010723.1 3014968 3016731 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ complement(3014968..3016731) Clostridium botulinum E3 str. Alaska E43 6317764 YP_001922219.1 CDS CLH_2842 NC_010723.1 3016757 3017275 R identified by glimmer; putative; hypothetical protein complement(3016757..3017275) Clostridium botulinum E3 str. Alaska E43 6319291 YP_001922220.1 CDS CLH_2843 NC_010723.1 3017279 3017680 R identified by glimmer; putative; hypothetical protein complement(3017279..3017680) Clostridium botulinum E3 str. Alaska E43 6317326 YP_001922221.1 CDS CLH_2844 NC_010723.1 3017834 3018412 D identified by glimmer; putative; hypothetical protein 3017834..3018412 Clostridium botulinum E3 str. Alaska E43 6318602 YP_001922222.1 CDS CLH_2845 NC_010723.1 3018576 3020552 R antimicrobial peptide ABC transporter permease complement(3018576..3020552) Clostridium botulinum E3 str. Alaska E43 6319083 YP_001922223.1 CDS CLH_2846 NC_010723.1 3020545 3021312 R identified by match to protein family HMM PF00005; bacitracin export ATP-binding protein BceA complement(3020545..3021312) Clostridium botulinum E3 str. Alaska E43 6319108 YP_001922224.1 CDS CLH_2847 NC_010723.1 3021578 3022594 R identified by match to protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(3021578..3022594) Clostridium botulinum E3 str. Alaska E43 6319483 YP_001922225.1 CDS CLH_2848 NC_010723.1 3022597 3023271 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator, winged helix family complement(3022597..3023271) Clostridium botulinum E3 str. Alaska E43 6319727 YP_001922226.1 CDS CLH_2849 NC_010723.1 3023487 3023843 R identified by glimmer; putative; hypothetical protein complement(3023487..3023843) Clostridium botulinum E3 str. Alaska E43 6319122 YP_001922227.1 CDS CLH_2850 NC_010723.1 3024112 3024465 D identified by glimmer; putative; hypothetical protein 3024112..3024465 Clostridium botulinum E3 str. Alaska E43 6317800 YP_001922228.1 CDS CLH_2851 NC_010723.1 3024571 3024984 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(3024571..3024984) Clostridium botulinum E3 str. Alaska E43 6320083 YP_001922229.1 CDS CLH_2852 NC_010723.1 3025159 3025617 D hypothetical protein 3025159..3025617 Clostridium botulinum E3 str. Alaska E43 6318122 YP_001922230.1 CDS CLH_2853 NC_010723.1 3025800 3026390 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin complement(3025800..3026390) Clostridium botulinum E3 str. Alaska E43 6318886 YP_001922231.1 CDS CLH_2854 NC_010723.1 3026594 3027553 R identified by match to protein family HMM PF01734; hypothetical protein complement(3026594..3027553) Clostridium botulinum E3 str. Alaska E43 6317623 YP_001922232.1 CDS thiE NC_010723.1 3027776 3028408 R identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase complement(3027776..3028408) Clostridium botulinum E3 str. Alaska E43 6317874 YP_001922233.1 CDS thiM NC_010723.1 3028588 3029424 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(3028588..3029424) Clostridium botulinum E3 str. Alaska E43 6319979 YP_001922234.1 CDS thiD NC_010723.1 3029617 3030402 R identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(3029617..3030402) Clostridium botulinum E3 str. Alaska E43 6318717 YP_001922235.1 CDS CLH_2858 NC_010723.1 3030455 3030583 R identified by glimmer; putative; hypothetical protein complement(3030455..3030583) Clostridium botulinum E3 str. Alaska E43 6318155 YP_001922236.1 CDS sdaAA NC_010723.1 3030866 3031744 R identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(3030866..3031744) Clostridium botulinum E3 str. Alaska E43 6319240 YP_001922237.1 CDS sdaAB NC_010723.1 3031746 3032432 R identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta complement(3031746..3032432) Clostridium botulinum E3 str. Alaska E43 6319481 YP_001922238.1 CDS CLH_2861 NC_010723.1 3032717 3034363 R identified by match to protein family HMM PF00485; phosphoribulokinase complement(3032717..3034363) Clostridium botulinum E3 str. Alaska E43 6319279 YP_001922239.1 CDS CLH_2862 NC_010723.1 3034499 3035197 D identified by match to protein family HMM PF04239; hypothetical protein 3034499..3035197 Clostridium botulinum E3 str. Alaska E43 6320309 YP_001922240.1 CDS CLH_2863 NC_010723.1 3035197 3035577 D hypothetical protein 3035197..3035577 Clostridium botulinum E3 str. Alaska E43 6319486 YP_001922241.1 CDS fba NC_010723.1 3035771 3036703 D identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 3035771..3036703 Clostridium botulinum E3 str. Alaska E43 6317577 YP_001922242.1 CDS argG NC_010723.1 3037425 3038648 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 3037425..3038648 Clostridium botulinum E3 str. Alaska E43 6317637 YP_001922243.1 CDS argH NC_010723.1 3038651 3040048 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3038651..3040048 Clostridium botulinum E3 str. Alaska E43 6319235 YP_001922244.1 CDS argC NC_010723.1 3040041 3041075 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 3040041..3041075 Clostridium botulinum E3 str. Alaska E43 6318852 YP_001922245.1 CDS argJ NC_010723.1 3041095 3042318 D identified by match to protein family HMM PF01960; match to protein family HMM TIGR00120; arginine biosynthesis bifunctional protein ArgJ 3041095..3042318 Clostridium botulinum E3 str. Alaska E43 6318919 YP_001922246.1 CDS argB NC_010723.1 3042351 3043205 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3042351..3043205 Clostridium botulinum E3 str. Alaska E43 6319773 YP_001922247.1 CDS CLH_2870 NC_010723.1 3043219 3044400 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 3043219..3044400 Clostridium botulinum E3 str. Alaska E43 6318011 YP_001922248.1 CDS argF NC_010723.1 3044494 3045414 D identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 3044494..3045414 Clostridium botulinum E3 str. Alaska E43 6317840 YP_001922249.1 CDS CLH_2872 NC_010723.1 3045791 3047506 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative sensory box/ggdef family protein 3045791..3047506 Clostridium botulinum E3 str. Alaska E43 6319643 YP_001922250.1 CDS CLH_2873 NC_010723.1 3047705 3048745 R hypothetical protein complement(3047705..3048745) Clostridium botulinum E3 str. Alaska E43 6319282 YP_001922251.1 CDS CLH_2874 NC_010723.1 3048922 3049482 D identified by match to protein family HMM PF01928; adenylate cyclase 3048922..3049482 Clostridium botulinum E3 str. Alaska E43 6318070 YP_001922252.1 CDS manA NC_010723.1 3049574 3050551 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(3049574..3050551) Clostridium botulinum E3 str. Alaska E43 6317674 YP_001922253.1 CDS pfkB NC_010723.1 3050901 3051827 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 1-phosphofructokinase complement(3050901..3051827) Clostridium botulinum E3 str. Alaska E43 6320419 YP_001922254.1 CDS gatY NC_010723.1 3052201 3053058 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase complement(3052201..3053058) Clostridium botulinum E3 str. Alaska E43 6319713 YP_001922255.1 CDS CLH_2878 NC_010723.1 3053103 3053534 R identified by match to protein family HMM PF03610; PTS system fructose IIA component complement(3053103..3053534) Clostridium botulinum E3 str. Alaska E43 6319385 YP_001922256.1 CDS CLH_2879 NC_010723.1 3053642 3054805 R identified by match to protein family HMM PF01380; AgaS protein complement(3053642..3054805) Clostridium botulinum E3 str. Alaska E43 6320458 YP_001922257.1 CDS CLH_2880 NC_010723.1 3054858 3055583 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM PF08220; GntR family transcriptional regulator complement(3054858..3055583) Clostridium botulinum E3 str. Alaska E43 6317553 YP_001922258.1 CDS CLH_2881 NC_010723.1 3055846 3056694 R identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID complement(3055846..3056694) Clostridium botulinum E3 str. Alaska E43 6318600 YP_001922259.1 CDS CLH_2882 NC_010723.1 3056684 3057451 R identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC complement(3056684..3057451) Clostridium botulinum E3 str. Alaska E43 6318046 YP_001922260.1 CDS CLH_2883 NC_010723.1 3057511 3057987 R identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854; PTS system mannose/fructose/sorbose family transporter subunit IIB complement(3057511..3057987) Clostridium botulinum E3 str. Alaska E43 6320082 YP_001922261.1 CDS CLH_2884 NC_010723.1 3058128 3058670 R identified by glimmer; putative; hypothetical protein complement(3058128..3058670) Clostridium botulinum E3 str. Alaska E43 6317360 YP_001922262.1 CDS nagA NC_010723.1 3058847 3059986 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 3058847..3059986 Clostridium botulinum E3 str. Alaska E43 6320375 YP_001922263.1 CDS CLH_2886 NC_010723.1 3060190 3061023 R identified by match to protein family HMM PF02153; prephenate dehydrogenase complement(3060190..3061023) Clostridium botulinum E3 str. Alaska E43 6320583 YP_001922264.1 CDS aroF NC_010723.1 3061041 3062054 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(3061041..3062054) Clostridium botulinum E3 str. Alaska E43 6319198 YP_001922265.1 CDS aroK NC_010723.1 3062137 3062634 R identified by match to protein family HMM PF01202; shikimate kinase complement(3062137..3062634) Clostridium botulinum E3 str. Alaska E43 6318832 YP_001922266.1 CDS aroE NC_010723.1 3062648 3063460 R identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(3062648..3063460) Clostridium botulinum E3 str. Alaska E43 6319796 YP_001922267.1 CDS CLH_2890 NC_010723.1 3063484 3064626 R identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01805; P-protein complement(3063484..3064626) Clostridium botulinum E3 str. Alaska E43 6320252 YP_001922268.1 CDS aroC NC_010723.1 3064833 3065906 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3064833..3065906) Clostridium botulinum E3 str. Alaska E43 6319869 YP_001922269.1 CDS aroA NC_010723.1 3065884 3067185 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(3065884..3067185) Clostridium botulinum E3 str. Alaska E43 6318033 YP_001922270.1 CDS aroB NC_010723.1 3067273 3068325 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3067273..3068325) Clostridium botulinum E3 str. Alaska E43 6319346 YP_001922271.1 CDS aroF NC_010723.1 3068422 3069435 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(3068422..3069435) Clostridium botulinum E3 str. Alaska E43 6317635 YP_001922272.1 CDS CLH_2895 NC_010723.1 3069813 3071246 R identified by match to protein family HMM PF00614; cardiolipin synthetase complement(3069813..3071246) Clostridium botulinum E3 str. Alaska E43 6319540 YP_001922273.1 CDS putP NC_010723.1 3072069 3073541 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter complement(3072069..3073541) Clostridium botulinum E3 str. Alaska E43 6318094 YP_001922274.1 CDS leuS NC_010723.1 3074155 3076605 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3074155..3076605 Clostridium botulinum E3 str. Alaska E43 6320365 YP_001922275.1 CDS CLH_2898 NC_010723.1 3076951 3079056 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(3076951..3079056) Clostridium botulinum E3 str. Alaska E43 6318396 YP_001922276.1 CDS CLH_2899 NC_010723.1 3079119 3079853 R maltose transacetylase complement(3079119..3079853) Clostridium botulinum E3 str. Alaska E43 6317716 YP_001922277.1 CDS CLH_2900 NC_010723.1 3080546 3081301 R hypothetical protein complement(3080546..3081301) Clostridium botulinum E3 str. Alaska E43 6319186 YP_001922278.1 CDS CLH_2901 NC_010723.1 3081558 3081887 D identified by match to protein family HMM TIGR01911; HesB family protein 3081558..3081887 Clostridium botulinum E3 str. Alaska E43 6317725 YP_001922279.1 CDS CLH_2902 NC_010723.1 3081929 3082624 R putative reticulocyte-binding protein complement(3081929..3082624) Clostridium botulinum E3 str. Alaska E43 6318735 YP_001922280.1 CDS CLH_2903 NC_010723.1 3082678 3084009 R hypothetical protein complement(3082678..3084009) Clostridium botulinum E3 str. Alaska E43 6319432 YP_001922281.1 CDS CLH_2904 NC_010723.1 3084125 3085213 R identified by match to protein family HMM PF07728; ATPase family protein complement(3084125..3085213) Clostridium botulinum E3 str. Alaska E43 6319533 YP_001922282.1 CDS CLH_2905 NC_010723.1 3085468 3086247 R hypothetical protein complement(3085468..3086247) Clostridium botulinum E3 str. Alaska E43 6320217 YP_001922283.1 CDS CLH_2906 NC_010723.1 3086326 3087117 R identified by match to protein family HMM PF04607; RelA/spoT family protein complement(3086326..3087117) Clostridium botulinum E3 str. Alaska E43 6318611 YP_001922284.1 CDS CLH_2907 NC_010723.1 3087321 3088001 D hypothetical protein 3087321..3088001 Clostridium botulinum E3 str. Alaska E43 6319086 YP_001922285.1 CDS CLH_2908 NC_010723.1 3088048 3089013 D identified by match to protein family HMM PF00015; putative methyl-accepting chemotaxis protein 3088048..3089013 Clostridium botulinum E3 str. Alaska E43 6317601 YP_001922286.1 CDS CLH_2909 NC_010723.1 3089211 3091304 R identified by match to protein family HMM PF01471; spore cortex-lytic protein complement(3089211..3091304) Clostridium botulinum E3 str. Alaska E43 6320103 YP_001922287.1 CDS CLH_2910 NC_010723.1 3091600 3092292 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(3091600..3092292) Clostridium botulinum E3 str. Alaska E43 6318536 YP_001922288.1 CDS CLH_2911 NC_010723.1 3092323 3092583 R flagella-associated protein complement(3092323..3092583) Clostridium botulinum E3 str. Alaska E43 6318945 YP_001922289.1 CDS CLH_2912 NC_010723.1 3092631 3094514 R hypothetical protein complement(3092631..3094514) Clostridium botulinum E3 str. Alaska E43 6319910 YP_001922290.1 CDS tyrS NC_010723.1 3094975 3096195 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3094975..3096195) Clostridium botulinum E3 str. Alaska E43 6317921 YP_001922291.1 CDS CLH_2914 NC_010723.1 3096524 3097642 R identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; spore germination protein complement(3096524..3097642) Clostridium botulinum E3 str. Alaska E43 6317603 YP_001922292.1 CDS CLH_2915 NC_010723.1 3097632 3099038 R identified by match to protein family HMM PF03323; spore germination protein complement(3097632..3099038) Clostridium botulinum E3 str. Alaska E43 6318706 YP_001922293.1 CDS CLH_2916 NC_010723.1 3099218 3100315 D identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 3099218..3100315 Clostridium botulinum E3 str. Alaska E43 6319194 YP_001922294.1 CDS CLH_2917 NC_010723.1 3100596 3101144 R membrane spanning protein complement(3100596..3101144) Clostridium botulinum E3 str. Alaska E43 6319318 YP_001922295.1 CDS trpS NC_010723.1 3101413 3102423 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3101413..3102423 Clostridium botulinum E3 str. Alaska E43 6319261 YP_001922296.1 CDS CLH_2919 NC_010723.1 3102644 3104656 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; putative membrane-associated methyl-accepting chemotaxis protein fused to hamp domain complement(3102644..3104656) Clostridium botulinum E3 str. Alaska E43 6319033 YP_001922297.1 CDS CLH_2920 NC_010723.1 3104646 3104765 R identified by glimmer; putative; hypothetical protein complement(3104646..3104765) Clostridium botulinum E3 str. Alaska E43 6319074 YP_001922298.1 CDS galU NC_010723.1 3104915 3105787 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(3104915..3105787) Clostridium botulinum E3 str. Alaska E43 6320386 YP_001922299.1 CDS brnQ NC_010723.1 3106132 3107403 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 3106132..3107403 Clostridium botulinum E3 str. Alaska E43 6317633 YP_001922300.1 CDS CLH_2923 NC_010723.1 3107582 3108685 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; lipopolysaccharide biosynthesis protein complement(3107582..3108685) Clostridium botulinum E3 str. Alaska E43 6318071 YP_001922301.1 CDS pglB NC_010723.1 3108913 3109518 R identified by match to protein family HMM PF02397; sugar transferase complement(3108913..3109518) Clostridium botulinum E3 str. Alaska E43 6317624 YP_001922302.1 CDS CLH_2925 NC_010723.1 3109664 3110890 R identified by match to protein family HMM PF00534; WblI protein complement(3109664..3110890) Clostridium botulinum E3 str. Alaska E43 6318035 YP_001922303.1 CDS CLH_2926 NC_010723.1 3111235 3112482 R identified by match to protein family HMM PF00534; amylovoran biosynthesis AmsK complement(3111235..3112482) Clostridium botulinum E3 str. Alaska E43 6320472 YP_001922304.1 CDS CLH_2927 NC_010723.1 3112698 3113762 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 3112698..3113762 Clostridium botulinum E3 str. Alaska E43 6320519 YP_001922305.1 CDS CLH_2928 NC_010723.1 3113804 3115294 R hypothetical protein complement(3113804..3115294) Clostridium botulinum E3 str. Alaska E43 6320121 YP_001922306.1 CDS CLH_2929 NC_010723.1 3115297 3117159 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; Cap5D complement(3115297..3117159) Clostridium botulinum E3 str. Alaska E43 6320602 YP_001922307.1 CDS CLH_2930 NC_010723.1 3117224 3118207 R identified by match to protein family HMM PF00535; cell wall biosynthesis glycosyltransferase complement(3117224..3118207) Clostridium botulinum E3 str. Alaska E43 6317919 YP_001922308.1 CDS CLH_2931 NC_010723.1 3118442 3119320 R identified by match to protein family HMM PF04991; LicD family protein complement(3118442..3119320) Clostridium botulinum E3 str. Alaska E43 6320094 YP_001922309.1 CDS CLH_2932 NC_010723.1 3119711 3120718 D identified by match to protein family HMM PF00535; minor teichoic acid biosynthesis protein GgaB 3119711..3120718 Clostridium botulinum E3 str. Alaska E43 6319068 YP_001922310.1 CDS CLH_2933 NC_010723.1 3121016 3121927 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(3121016..3121927) Clostridium botulinum E3 str. Alaska E43 6318901 YP_001922311.1 CDS CLH_2934 NC_010723.1 3122187 3123074 R identified by match to protein family HMM PF00528; ABC transporter permease complement(3122187..3123074) Clostridium botulinum E3 str. Alaska E43 6320127 YP_001922312.1 CDS CLH_2935 NC_010723.1 3123336 3124655 R identified by match to protein family HMM PF01547; putative glycerol-3-phosphate ABC transporter complement(3123336..3124655) Clostridium botulinum E3 str. Alaska E43 6320345 YP_001922313.1 CDS CLH_2936 NC_010723.1 3124844 3125710 R identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase, Cof family complement(3124844..3125710) Clostridium botulinum E3 str. Alaska E43 6318980 YP_001922314.1 CDS CLH_2937 NC_010723.1 3125764 3127770 R identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; putative signaling protein complement(3125764..3127770) Clostridium botulinum E3 str. Alaska E43 6318714 YP_001922315.1 CDS CLH_2938 NC_010723.1 3128333 3129304 R identified by match to protein family HMM PF00892; integral membrane protein domain-containing protein complement(3128333..3129304) Clostridium botulinum E3 str. Alaska E43 6318206 YP_001922316.1 CDS CLH_2939 NC_010723.1 3129846 3130553 R identified by match to protein family HMM PF01473; cell wall binding domain-containing protein complement(3129846..3130553) Clostridium botulinum E3 str. Alaska E43 6317580 YP_001922317.1 CDS CLH_2940 NC_010723.1 3130939 3132405 R identified by match to protein family HMM PF01943; match to protein family HMM PF03023; polysaccharide biosynthesis protein complement(3130939..3132405) Clostridium botulinum E3 str. Alaska E43 6319117 YP_001922318.1 CDS CLH_2941 NC_010723.1 3132589 3133287 R LicC protein complement(3132589..3133287) Clostridium botulinum E3 str. Alaska E43 6319398 YP_001922319.1 CDS CLH_2942 NC_010723.1 3133302 3135161 R identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636; choline/ethanolamine kinase family protein complement(3133302..3135161) Clostridium botulinum E3 str. Alaska E43 6318266 YP_001922320.1 CDS CLH_2943 NC_010723.1 3135869 3136414 R identified by glimmer; putative; hypothetical protein complement(3135869..3136414) Clostridium botulinum E3 str. Alaska E43 6317935 YP_001922321.1 CDS CLH_2944 NC_010723.1 3136782 3137405 R hypothetical protein complement(3136782..3137405) Clostridium botulinum E3 str. Alaska E43 6318317 YP_001922322.1 CDS CLH_2945 NC_010723.1 3137701 3140685 R identified by match to protein family HMM PF01473; putative collagenolytic protease complement(3137701..3140685) Clostridium botulinum E3 str. Alaska E43 6317684 YP_001922323.1 CDS CLH_2946 NC_010723.1 3141134 3143191 R identified by match to protein family HMM PF01473; match to protein family HMM PF01520; surface protein PspC complement(3141134..3143191) Clostridium botulinum E3 str. Alaska E43 6319276 YP_001922324.1 CDS CLH_2947 NC_010723.1 3143492 3145705 R identified by match to protein family HMM PF01473; match to protein family HMM PF01520; surface protein PspC complement(3143492..3145705) Clostridium botulinum E3 str. Alaska E43 6319328 YP_001922325.1 CDS CLH_2948 NC_010723.1 3146051 3146320 D putative anaerobic ribonucleoside-triphosphate reductase 3146051..3146320 Clostridium botulinum E3 str. Alaska E43 6320329 YP_001922326.1 CDS CLH_2949 NC_010723.1 3146575 3147402 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YidA 3146575..3147402 Clostridium botulinum E3 str. Alaska E43 6320113 YP_001922327.1 CDS CLH_2950 NC_010723.1 3147705 3148535 D identified by match to protein family HMM PF08543; pyridoxine kinase 3147705..3148535 Clostridium botulinum E3 str. Alaska E43 6320301 YP_001922328.1 CDS trx NC_010723.1 3148670 3148981 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(3148670..3148981) Clostridium botulinum E3 str. Alaska E43 6319052 YP_001922329.1 CDS CLH_2952 NC_010723.1 3149092 3149958 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(3149092..3149958) Clostridium botulinum E3 str. Alaska E43 6319451 YP_001922330.1 CDS CLH_2953 NC_010723.1 3150467 3151264 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; HisJ family histidinol phosphate phosphatase 3150467..3151264 Clostridium botulinum E3 str. Alaska E43 6319155 YP_001922331.1 CDS CLH_2954 NC_010723.1 3151478 3153532 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; membrane assosiated methyl-accepting chemotaxis protein with hamp domain complement(3151478..3153532) Clostridium botulinum E3 str. Alaska E43 6319123 YP_001922332.1 CDS CLH_2955 NC_010723.1 3153898 3155937 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative methyl-accepting chemotaxis protein complement(3153898..3155937) Clostridium botulinum E3 str. Alaska E43 6318088 YP_001922333.1 CDS gltA NC_010723.1 3156560 3157951 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(3156560..3157951) Clostridium botulinum E3 str. Alaska E43 6317437 YP_001922334.1 CDS CLH_2957 NC_010723.1 3157951 3158841 R identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha complement(3157951..3158841) Clostridium botulinum E3 str. Alaska E43 6319085 YP_001922335.1 CDS CLH_2958 NC_010723.1 3159096 3160262 R identified by match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase complement(3159096..3160262) Clostridium botulinum E3 str. Alaska E43 6320592 YP_001922336.1 CDS CLH_2959 NC_010723.1 3160681 3162591 R identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; signal-transduction and transcriptional-control protein complement(3160681..3162591) Clostridium botulinum E3 str. Alaska E43 6320507 YP_001922337.1 CDS CLH_2960 NC_010723.1 3163008 3163451 R identified by match to protein family HMM PF06725; 3D domain-containing protein complement(3163008..3163451) Clostridium botulinum E3 str. Alaska E43 6319932 YP_001922338.1 CDS CLH_2961 NC_010723.1 3163734 3164174 R hypothetical protein complement(3163734..3164174) Clostridium botulinum E3 str. Alaska E43 6318543 YP_001922339.1 CDS prfC NC_010723.1 3164606 3166201 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 complement(3164606..3166201) Clostridium botulinum E3 str. Alaska E43 6318546 YP_001922340.1 CDS CLH_2963 NC_010723.1 3166744 3170958 R identified by match to protein family HMM PF01473; match to protein family HMM PF09479; match to protein family HMM TIGR02543; putative cell wall binding repeat protein complement(3166744..3170958) Clostridium botulinum E3 str. Alaska E43 6318204 YP_001922341.1 CDS CLH_2964 NC_010723.1 3171055 3171639 R hypothetical protein complement(3171055..3171639) Clostridium botulinum E3 str. Alaska E43 6318164 YP_001922342.1 CDS CLH_2965 NC_010723.1 3172010 3174097 R identified by match to protein family HMM PF00990; match to protein family HMM PF07719; match to protein family HMM TIGR00254; putative ggdef domain-containing protein complement(3172010..3174097) Clostridium botulinum E3 str. Alaska E43 6317349 YP_001922343.1 CDS CLH_2966 NC_010723.1 3174141 3175574 R identified by match to protein family HMM PF01473; surface protein PspC complement(3174141..3175574) Clostridium botulinum E3 str. Alaska E43 6319410 YP_001922344.1 CDS CLH_2967 NC_010723.1 3176131 3177369 R identified by match to protein family HMM PF01473; surface protein PspC complement(3176131..3177369) Clostridium botulinum E3 str. Alaska E43 6317918 YP_001922345.1 CDS CLH_2968 NC_010723.1 3177520 3178866 R identified by match to protein family HMM PF01473; collagenolytic protease complement(3177520..3178866) Clostridium botulinum E3 str. Alaska E43 6319290 YP_001922346.1 CDS CLH_2969 NC_010723.1 3179027 3179902 R identified by match to protein family HMM PF01473; surface protein PspC complement(3179027..3179902) Clostridium botulinum E3 str. Alaska E43 6318280 YP_001922347.1 CDS CLH_2970 NC_010723.1 3180188 3181792 R identified by match to protein family HMM PF01473; collagenolytic protease complement(3180188..3181792) Clostridium botulinum E3 str. Alaska E43 6317831 YP_001922348.1 CDS CLH_2971 NC_010723.1 3182127 3183839 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; membrane assosiated methyl-accepting chemotaxis protein with hamp domain complement(3182127..3183839) Clostridium botulinum E3 str. Alaska E43 6318891 YP_001922349.1 CDS CLH_2972 NC_010723.1 3184419 3184736 R identified by match to protein family HMM PF01473; collagenolytic protease complement(3184419..3184736) Clostridium botulinum E3 str. Alaska E43 6318075 YP_001922350.1 CDS CLH_2973 NC_010723.1 3185065 3187569 R identified by match to protein family HMM PF00196; transcriptional regulator, LuxR family protein complement(3185065..3187569) Clostridium botulinum E3 str. Alaska E43 6318044 YP_001922351.1 CDS CLH_2974 NC_010723.1 3187666 3189480 R identified by match to protein family HMM PF01473; surface protein PspC complement(3187666..3189480) Clostridium botulinum E3 str. Alaska E43 6318258 YP_001922352.1 CDS CLH_2975 NC_010723.1 3190064 3192298 R identified by match to protein family HMM PF01473; surface protein PspC complement(3190064..3192298) Clostridium botulinum E3 str. Alaska E43 6317568 YP_001922353.1 CDS CLH_2976 NC_010723.1 3192559 3194232 R identified by match to protein family HMM PF01473; collagenolytic protease complement(3192559..3194232) Clostridium botulinum E3 str. Alaska E43 6320247 YP_001922354.1 CDS CLH_2977 NC_010723.1 3194620 3196926 R identified by match to protein family HMM PF01473; surface protein PspA complement(3194620..3196926) Clostridium botulinum E3 str. Alaska E43 6319149 YP_001922355.1 CDS CLH_2978 NC_010723.1 3197170 3198954 R identified by match to protein family HMM PF01473; hypothetical protein complement(3197170..3198954) Clostridium botulinum E3 str. Alaska E43 6319966 YP_001922356.1 CDS CLH_2979 NC_010723.1 3199513 3200994 D putative lipoprotein 3199513..3200994 Clostridium botulinum E3 str. Alaska E43 6318896 YP_001922357.1 CDS CLH_2980 NC_010723.1 3201103 3203142 R identified by match to protein family HMM PF01431; match to protein family HMM PF05649; neutral endopeptidase complement(3201103..3203142) Clostridium botulinum E3 str. Alaska E43 6320599 YP_001922358.1 CDS CLH_2981 NC_010723.1 3203594 3204088 R hypothetical protein complement(3203594..3204088) Clostridium botulinum E3 str. Alaska E43 6318193 YP_001922359.1 CDS CLH_2982 NC_010723.1 3204081 3204596 R hypothetical protein complement(3204081..3204596) Clostridium botulinum E3 str. Alaska E43 6318143 YP_001922360.1 CDS CLH_2983 NC_010723.1 3204590 3204739 D identified by glimmer; putative; hypothetical protein 3204590..3204739 Clostridium botulinum E3 str. Alaska E43 6317972 YP_001922361.1 CDS CLH_2984 NC_010723.1 3204922 3205656 R identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714; phage protein complement(3204922..3205656) Clostridium botulinum E3 str. Alaska E43 6319976 YP_001922362.1 CDS CLH_2985 NC_010723.1 3205898 3206746 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(3205898..3206746) Clostridium botulinum E3 str. Alaska E43 6317817 YP_001922363.1 CDS CLH_2986 NC_010723.1 3206866 3207699 D hypothetical protein 3206866..3207699 Clostridium botulinum E3 str. Alaska E43 6319457 YP_001922364.1 CDS CLH_2987 NC_010723.1 3207787 3208017 R acyl carrier protein complement(3207787..3208017) Clostridium botulinum E3 str. Alaska E43 6320555 YP_001922365.1 CDS CLH_2988 NC_010723.1 3208064 3209578 R identified by match to protein family HMM PF00501; amino acid adenylation protein complement(3208064..3209578) Clostridium botulinum E3 str. Alaska E43 6317404 YP_001922366.1 CDS CLH_2989 NC_010723.1 3209599 3210957 R identified by glimmer; putative; hypothetical protein complement(3209599..3210957) Clostridium botulinum E3 str. Alaska E43 6317642 YP_001922367.1 CDS CLH_2990 NC_010723.1 3210944 3212542 R identified by match to protein family HMM PF03062; alginate O-acetylation protein complement(3210944..3212542) Clostridium botulinum E3 str. Alaska E43 6320455 YP_001922368.1 CDS CLH_2991 NC_010723.1 3213554 3213775 R transposase, IS4 family protein complement(3213554..3213775) Clostridium botulinum E3 str. Alaska E43 6317822 YP_001922369.1 CDS CLH_2992 NC_010723.1 3213739 3213906 R identified by glimmer; putative; hypothetical protein complement(3213739..3213906) Clostridium botulinum E3 str. Alaska E43 6319706 YP_001922370.1 CDS CLH_2993 NC_010723.1 3214165 3215022 R identified by match to protein family HMM PF00535; family 2 glycosyl transferase complement(3214165..3215022) Clostridium botulinum E3 str. Alaska E43 6317648 YP_001922371.1 CDS CLH_2994 NC_010723.1 3215027 3216175 R identified by match to protein family HMM PF04464; glycosyl transferase family protein complement(3215027..3216175) Clostridium botulinum E3 str. Alaska E43 6319296 YP_001922372.1 CDS CLH_2995 NC_010723.1 3216176 3217201 R identified by match to protein family HMM PF08240; zinc-dependent alcohol dehydrogenase complement(3216176..3217201) Clostridium botulinum E3 str. Alaska E43 6318974 YP_001922373.1 CDS ispD NC_010723.1 3217191 3217910 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3217191..3217910) Clostridium botulinum E3 str. Alaska E43 6319830 YP_001922374.1 CDS CLH_2997 NC_010723.1 3217936 3219189 R identified by match to protein family HMM PF04464; putative CDP-glycerol:glycerophosphate glycerophosphotransferase complement(3217936..3219189) Clostridium botulinum E3 str. Alaska E43 6317890 YP_001922375.1 CDS CLH_2998 NC_010723.1 3219236 3219970 R identified by match to protein family HMM PF00005; teichoic acids export ATP-binding protein TagH complement(3219236..3219970) Clostridium botulinum E3 str. Alaska E43 6318489 YP_001922376.1 CDS CLH_2999 NC_010723.1 3219982 3220758 R identified by match to protein family HMM PF01061; ABC transporter complement(3219982..3220758) Clostridium botulinum E3 str. Alaska E43 6319114 YP_001922377.1 CDS rfbD NC_010723.1 3220778 3221632 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase complement(3220778..3221632) Clostridium botulinum E3 str. Alaska E43 6317519 YP_001922378.1 CDS CLH_3001 NC_010723.1 3221653 3222630 R identified by match to protein family HMM PF00535; glycosyltransferase complement(3221653..3222630) Clostridium botulinum E3 str. Alaska E43 6319858 YP_001922379.1 CDS rfbB NC_010723.1 3222725 3223744 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(3222725..3223744) Clostridium botulinum E3 str. Alaska E43 6320520 YP_001922380.1 CDS rfbC NC_010723.1 3223858 3224397 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3223858..3224397) Clostridium botulinum E3 str. Alaska E43 6318282 YP_001922381.1 CDS rfbA NC_010723.1 3224429 3225307 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(3224429..3225307) Clostridium botulinum E3 str. Alaska E43 6320383 YP_001922382.1 CDS CLH_3005 NC_010723.1 3225576 3227015 D identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025; undecaprenyl-phosphate glucose phosphotransferase 3225576..3227015 Clostridium botulinum E3 str. Alaska E43 6317799 YP_001922383.1 CDS CLH_3006 NC_010723.1 3227328 3227474 R hypothetical protein complement(3227328..3227474) Clostridium botulinum E3 str. Alaska E43 6318335 YP_001922384.1 CDS CLH_3007 NC_010723.1 3228041 3229873 D identified by match to protein family HMM PF04932; O-antigen polymerase family 3228041..3229873 Clostridium botulinum E3 str. Alaska E43 6317818 YP_001922385.1 CDS CLH_3008 NC_010723.1 3229979 3230386 R identified by match to protein family HMM PF01934; hypothetical protein complement(3229979..3230386) Clostridium botulinum E3 str. Alaska E43 6318874 YP_001922386.1 CDS CLH_3009 NC_010723.1 3230376 3230777 R identified by match to protein family HMM PF01909; DNA polymerase, beta domain-containing protein region complement(3230376..3230777) Clostridium botulinum E3 str. Alaska E43 6317870 YP_001922387.1 CDS CLH_3010 NC_010723.1 3230965 3232752 R identified by match to protein family HMM PF01473; SigA binding protein complement(3230965..3232752) Clostridium botulinum E3 str. Alaska E43 6317332 YP_001922388.1 CDS CLH_3011 NC_010723.1 3233454 3235775 R identified by match to protein family HMM PF01473; SigA binding protein complement(3233454..3235775) Clostridium botulinum E3 str. Alaska E43 6320038 YP_001922389.1 CDS CLH_3012 NC_010723.1 3237328 3237579 D hypothetical protein 3237328..3237579 Clostridium botulinum E3 str. Alaska E43 6319514 YP_001922390.1 CDS CLH_3013 NC_010723.1 3237864 3239978 R identified by match to protein family HMM PF00753; match to protein family HMM PF01473; putative surface protein C complement(3237864..3239978) Clostridium botulinum E3 str. Alaska E43 6318268 YP_001922391.1 CDS CLH_3014 NC_010723.1 3240312 3241157 R L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase complement(3240312..3241157) Clostridium botulinum E3 str. Alaska E43 6320391 YP_001922392.1 CDS araD NC_010723.1 3241355 3242044 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(3241355..3242044) Clostridium botulinum E3 str. Alaska E43 6320353 YP_001922393.1 CDS CLH_3016 NC_010723.1 3242401 3243438 R hypothetical protein complement(3242401..3243438) Clostridium botulinum E3 str. Alaska E43 6319645 YP_001922394.1 CDS CLH_3017 NC_010723.1 3243577 3243870 R identified by match to protein family HMM PF02302; PTS system enzyme IIB component complement(3243577..3243870) Clostridium botulinum E3 str. Alaska E43 6319924 YP_001922395.1 CDS CLH_3018 NC_010723.1 3243949 3245403 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(3243949..3245403) Clostridium botulinum E3 str. Alaska E43 6317783 YP_001922396.1 CDS CLH_3019 NC_010723.1 3245496 3245939 R identified by match to protein family HMM PF00359; phosphotransferase system mannitol/fructose-specific IIA domain complement(3245496..3245939) Clostridium botulinum E3 str. Alaska E43 6317564 YP_001922397.1 CDS CLH_3020 NC_010723.1 3246080 3247144 R putative L-ascorbate 6-phosphate lactonase complement(3246080..3247144) Clostridium botulinum E3 str. Alaska E43 6319044 YP_001922398.1 CDS CLH_3021 NC_010723.1 3247455 3248246 D identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 3247455..3248246 Clostridium botulinum E3 str. Alaska E43 6318942 YP_001922399.1 CDS CLH_3022 NC_010723.1 3248452 3249741 R catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 complement(3248452..3249741) Clostridium botulinum E3 str. Alaska E43 6320277 YP_001922400.1 CDS CLH_3023 NC_010723.1 3250491 3251666 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 3250491..3251666 Clostridium botulinum E3 str. Alaska E43 6317596 YP_001922401.1 CDS CLH_3024 NC_010723.1 3251951 3252274 D identified by glimmer; putative; hypothetical protein 3251951..3252274 Clostridium botulinum E3 str. Alaska E43 6318341 YP_001922402.1 CDS CLH_3025 NC_010723.1 3253008 3254639 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; putative acetolactate synthase large subunit complement(3253008..3254639) Clostridium botulinum E3 str. Alaska E43 6318336 YP_001922403.1 CDS CLH_3026 NC_010723.1 3254626 3255087 R identified by glimmer; putative; hypothetical protein complement(3254626..3255087) Clostridium botulinum E3 str. Alaska E43 6318187 YP_001922404.1 CDS CLH_3027 NC_010723.1 3255542 3255913 R identified by glimmer; putative; hypothetical protein complement(3255542..3255913) Clostridium botulinum E3 str. Alaska E43 6319073 YP_001922405.1 CDS CLH_3028 NC_010723.1 3256109 3256480 R identified by glimmer; putative; hypothetical protein complement(3256109..3256480) Clostridium botulinum E3 str. Alaska E43 6318377 YP_001922406.1 CDS CLH_3029 NC_010723.1 3256850 3257500 D identified by glimmer; putative; hypothetical protein 3256850..3257500 Clostridium botulinum E3 str. Alaska E43 6320159 YP_001922407.1 CDS CLH_3030 NC_010723.1 3257651 3259117 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(3257651..3259117) Clostridium botulinum E3 str. Alaska E43 6319603 YP_001922408.1 CDS CLH_3031 NC_010723.1 3259479 3260201 R identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ complement(3259479..3260201) Clostridium botulinum E3 str. Alaska E43 6318201 YP_001922409.1 CDS CLH_3032 NC_010723.1 3260188 3260847 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter substrate-binding protein/permease complement(3260188..3260847) Clostridium botulinum E3 str. Alaska E43 6318723 YP_001922410.1 CDS CLH_3033 NC_010723.1 3260929 3261765 R identified by match to protein family HMM PF00497; amino acid ABC transporter complement(3260929..3261765) Clostridium botulinum E3 str. Alaska E43 6320134 YP_001922411.1 CDS CLH_3034 NC_010723.1 3262445 3264556 R ATP-dependent DNA helicase rep complement(3262445..3264556) Clostridium botulinum E3 str. Alaska E43 6318814 YP_001922412.1 CDS CLH_3035 NC_010723.1 3264907 3267003 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; putative cell division protease FtsH complement(3264907..3267003) Clostridium botulinum E3 str. Alaska E43 6319529 YP_001922413.1 CDS CLH_3036 NC_010723.1 3267048 3267266 R hypothetical protein complement(3267048..3267266) Clostridium botulinum E3 str. Alaska E43 6319698 YP_001922414.1 CDS lepB NC_010723.1 3267401 3267928 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(3267401..3267928) Clostridium botulinum E3 str. Alaska E43 6319716 YP_001922415.1 CDS lepB NC_010723.1 3267995 3268513 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(3267995..3268513) Clostridium botulinum E3 str. Alaska E43 6319305 YP_001922416.1 CDS lysA NC_010723.1 3268799 3270094 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(3268799..3270094) Clostridium botulinum E3 str. Alaska E43 6318441 YP_001922417.1 CDS CLH_3040 NC_010723.1 3270411 3270524 R identified by glimmer; putative; hypothetical protein complement(3270411..3270524) Clostridium botulinum E3 str. Alaska E43 6319923 YP_001922418.1 CDS CLH_3041 NC_010723.1 3270675 3271349 R dihydrodipicolinate synthase/N-acetylneuraminate lyase complement(3270675..3271349) Clostridium botulinum E3 str. Alaska E43 6317883 YP_001922419.1 CDS CLH_3042 NC_010723.1 3271446 3271577 R identified by glimmer; putative; hypothetical protein complement(3271446..3271577) Clostridium botulinum E3 str. Alaska E43 6318829 YP_001922420.1 CDS CLH_3043 NC_010723.1 3272182 3272943 R identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(3272182..3272943) Clostridium botulinum E3 str. Alaska E43 6319853 YP_001922421.1 CDS CLH_3044 NC_010723.1 3273096 3274340 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; membrane associated methyl-accepting chemotaxis protein complement(3273096..3274340) Clostridium botulinum E3 str. Alaska E43 6319873 YP_001922422.1 CDS CLH_3045 NC_010723.1 3274577 3275761 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 3274577..3275761 Clostridium botulinum E3 str. Alaska E43 6319673 YP_001922423.1 CDS CLH_3046 NC_010723.1 3275860 3278814 R identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein complement(3275860..3278814) Clostridium botulinum E3 str. Alaska E43 6317964 YP_001922424.1 CDS CLH_3047 NC_010723.1 3278891 3279427 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; putative prepilin peptidase-dependent complement(3278891..3279427) Clostridium botulinum E3 str. Alaska E43 6318178 YP_001922425.1 CDS CLH_3048 NC_010723.1 3279444 3281816 R hypothetical protein complement(3279444..3281816) Clostridium botulinum E3 str. Alaska E43 6318354 YP_001922426.1 CDS CLH_3049 NC_010723.1 3281828 3282745 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain-containing protein complement(3281828..3282745) Clostridium botulinum E3 str. Alaska E43 6317308 YP_001922427.1 CDS CLH_3050 NC_010723.1 3282756 3284027 R hypothetical protein complement(3282756..3284027) Clostridium botulinum E3 str. Alaska E43 6318508 YP_001922428.1 CDS CLH_3051 NC_010723.1 3284024 3284587 R identified by match to protein family HMM PF05137; fimbrial assembly protein PilN complement(3284024..3284587) Clostridium botulinum E3 str. Alaska E43 6319575 YP_001922429.1 CDS CLH_3052 NC_010723.1 3284603 3285769 R identified by match to protein family HMM TIGR01175; type IV pilus assembly protein PilM complement(3284603..3285769) Clostridium botulinum E3 str. Alaska E43 6319256 YP_001922430.1 CDS CLH_3053 NC_010723.1 3286024 3286458 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin peptidase-dependent complement(3286024..3286458) Clostridium botulinum E3 str. Alaska E43 6320063 YP_001922431.1 CDS CLH_3054 NC_010723.1 3286481 3287683 R identified by match to protein family HMM PF00482; type II secretion system protein F complement(3286481..3287683) Clostridium botulinum E3 str. Alaska E43 6317329 YP_001922432.1 CDS CLH_3055 NC_010723.1 3287792 3289480 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB complement(3287792..3289480) Clostridium botulinum E3 str. Alaska E43 6320346 YP_001922433.1 CDS CLH_3056 NC_010723.1 3289543 3290301 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type IV leader peptidase family protein complement(3289543..3290301) Clostridium botulinum E3 str. Alaska E43 6317762 YP_001922434.1 CDS CLH_3057 NC_010723.1 3290840 3291790 R putative lipoprotein complement(3290840..3291790) Clostridium botulinum E3 str. Alaska E43 6317394 YP_001922435.1 CDS CLH_3058 NC_010723.1 3292130 3292444 R identified by glimmer; putative; hypothetical protein complement(3292130..3292444) Clostridium botulinum E3 str. Alaska E43 6318748 YP_001922436.1 CDS CLH_3059 NC_010723.1 3292849 3294729 D identified by match to protein family HMM PF00015; match to protein family HMM TIGR01098; methyl-accepting chemotaxis protein 3292849..3294729 Clostridium botulinum E3 str. Alaska E43 6320331 YP_001922437.1 CDS CLH_3060 NC_010723.1 3295033 3295236 R identified by match to protein family HMM PF00403; copper-transporting P-type ATPase complement(3295033..3295236) Clostridium botulinum E3 str. Alaska E43 6318431 YP_001922438.1 CDS CLH_3061 NC_010723.1 3295399 3297828 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(3295399..3297828) Clostridium botulinum E3 str. Alaska E43 6318580 YP_001922439.1 CDS CLH_3062 NC_010723.1 3297885 3298151 R identified by match to protein family HMM PF02583; hypothetical protein complement(3297885..3298151) Clostridium botulinum E3 str. Alaska E43 6317721 YP_001922440.1 CDS CLH_3063 NC_010723.1 3298502 3299680 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 1 complement(3298502..3299680) Clostridium botulinum E3 str. Alaska E43 6317934 YP_001922441.1 CDS CLH_3064 NC_010723.1 3299840 3300292 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative peroxiredoxin bcp 3299840..3300292 Clostridium botulinum E3 str. Alaska E43 6318024 YP_001922442.1 CDS CLH_3065 NC_010723.1 3300379 3301158 R identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3300379..3301158) Clostridium botulinum E3 str. Alaska E43 6320426 YP_001922443.1 CDS CLH_3066 NC_010723.1 3301278 3304379 R identified by match to protein family HMM PF05031; putative cell wall anchor domain-containing protein complement(3301278..3304379) Clostridium botulinum E3 str. Alaska E43 6320296 YP_001922444.1 CDS CLH_3067 NC_010723.1 3304446 3304892 R identified by glimmer; putative; hypothetical protein complement(3304446..3304892) Clostridium botulinum E3 str. Alaska E43 6320045 YP_001922445.1 CDS CLH_3068 NC_010723.1 3304918 3305298 R identified by match to protein family HMM PF04304; hypothetical protein complement(3304918..3305298) Clostridium botulinum E3 str. Alaska E43 6318148 YP_001922446.1 CDS CLH_3069 NC_010723.1 3305341 3305607 R hypothetical protein complement(3305341..3305607) Clostridium botulinum E3 str. Alaska E43 6319214 YP_001922447.1 CDS CLH_3070 NC_010723.1 3305865 3307550 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease complement(3305865..3307550) Clostridium botulinum E3 str. Alaska E43 6319274 YP_001922448.1 CDS CLH_3071 NC_010723.1 3307554 3309305 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug resistance protein 1 complement(3307554..3309305) Clostridium botulinum E3 str. Alaska E43 6318537 YP_001922449.1 CDS CLH_3072 NC_010723.1 3309601 3311187 R lipase complement(3309601..3311187) Clostridium botulinum E3 str. Alaska E43 6318074 YP_001922450.1 CDS CLH_3073 NC_010723.1 3311287 3312627 R putative lipase complement(3311287..3312627) Clostridium botulinum E3 str. Alaska E43 6319589 YP_001922451.1 CDS CLH_3074 NC_010723.1 3313715 3315073 R lipase 2 complement(3313715..3315073) Clostridium botulinum E3 str. Alaska E43 6318949 YP_001922452.1 CDS CLH_3075 NC_010723.1 3315953 3316747 R membrane protein complement(3315953..3316747) Clostridium botulinum E3 str. Alaska E43 6317981 YP_001922453.1 CDS CLH_3076 NC_010723.1 3317078 3317842 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein complement(3317078..3317842) Clostridium botulinum E3 str. Alaska E43 6319937 YP_001922454.1 CDS CLH_3077 NC_010723.1 3317935 3318141 R transcription regulator, Cro/CI family -related protein complement(3317935..3318141) Clostridium botulinum E3 str. Alaska E43 6318048 YP_001922455.1 CDS CLH_3078 NC_010723.1 3318160 3318654 R hypothetical protein complement(3318160..3318654) Clostridium botulinum E3 str. Alaska E43 6318384 YP_001922456.1 CDS CLH_3079 NC_010723.1 3318818 3319033 R putative lipoprotein complement(3318818..3319033) Clostridium botulinum E3 str. Alaska E43 6320338 YP_001922457.1 CDS CLH_3080 NC_010723.1 3319432 3320250 R identified by match to protein family HMM PF00941; medium FAD-binding subunit of molybdenum enzyme complement(3319432..3320250) Clostridium botulinum E3 str. Alaska E43 6319069 YP_001922458.1 CDS CLH_3081 NC_010723.1 3320244 3320720 R identified by match to protein family HMM PF00111; match to protein family HMM PF01799; putative xanthine dehydrogenase, iron-sulfur binding subunit complement(3320244..3320720) Clostridium botulinum E3 str. Alaska E43 6319234 YP_001922459.1 CDS CLH_3082 NC_010723.1 3320722 3322851 R identified by match to protein family HMM PF01315; match to protein family HMM PF02738; putative xanthine dehydrogenase, molybdenum-binding subunit complement(3320722..3322851) Clostridium botulinum E3 str. Alaska E43 6318756 YP_001922460.1 CDS CLH_3083 NC_010723.1 3322973 3323899 R identified by match to protein family HMM PF00126; transcriptional regulator, LysR family protein complement(3322973..3323899) Clostridium botulinum E3 str. Alaska E43 6319867 YP_001922461.1 CDS rumA NC_010723.1 3324109 3325476 R identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(3324109..3325476) Clostridium botulinum E3 str. Alaska E43 6317659 YP_001922462.1 CDS CLH_3085 NC_010723.1 3325707 3326063 R hypothetical protein complement(3325707..3326063) Clostridium botulinum E3 str. Alaska E43 6317301 YP_001922463.1 CDS pyk NC_010723.1 3326418 3327833 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(3326418..3327833) Clostridium botulinum E3 str. Alaska E43 6319338 YP_001922464.1 CDS pfkA NC_010723.1 3327893 3328855 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(3327893..3328855) Clostridium botulinum E3 str. Alaska E43 6319420 YP_001922465.1 CDS dnaE NC_010723.1 3329381 3332989 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(3329381..3332989) Clostridium botulinum E3 str. Alaska E43 6318108 YP_001922466.1 CDS CLH_3089 NC_010723.1 3333601 3333885 R identified by match to protein family HMM PF07876; stress responsive alpha-beta barrel domain-containing protein complement(3333601..3333885) Clostridium botulinum E3 str. Alaska E43 6318688 YP_001922467.1 CDS CLH_3090 NC_010723.1 3333902 3334849 R identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein complement(3333902..3334849) Clostridium botulinum E3 str. Alaska E43 6318668 YP_001922468.1 CDS CLH_3091 NC_010723.1 3334865 3336226 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; transporter complement(3334865..3336226) Clostridium botulinum E3 str. Alaska E43 6320403 YP_001922469.1 CDS CLH_3092 NC_010723.1 3336223 3337107 R identified by match to protein family HMM PF03668; hypothetical protein complement(3336223..3337107) Clostridium botulinum E3 str. Alaska E43 6319012 YP_001922470.1 CDS murB NC_010723.1 3337538 3338452 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3337538..3338452) Clostridium botulinum E3 str. Alaska E43 6320146 YP_001922471.1 CDS uvrC NC_010723.1 3338525 3340414 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3338525..3340414) Clostridium botulinum E3 str. Alaska E43 6318895 YP_001922472.1 CDS CLH_3095 NC_010723.1 3340630 3342114 R identified by match to protein family HMM PF00905; penicillin-binding protein complement(3340630..3342114) Clostridium botulinum E3 str. Alaska E43 6319416 YP_001922473.1 CDS CLH_3096 NC_010723.1 3342117 3343307 R identified by match to protein family HMM PF01098; stage V sporulation protein E complement(3342117..3343307) Clostridium botulinum E3 str. Alaska E43 6317266 YP_001922474.1 CDS CLH_3097 NC_010723.1 3343359 3343802 R identified by match to protein family HMM PF00498; FHA-domain containing protein complement(3343359..3343802) Clostridium botulinum E3 str. Alaska E43 6318083 YP_001922475.1 CDS uvrA NC_010723.1 3344176 3346998 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(3344176..3346998) Clostridium botulinum E3 str. Alaska E43 6318229 YP_001922476.1 CDS uvrB NC_010723.1 3347003 3348976 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3347003..3348976) Clostridium botulinum E3 str. Alaska E43 6318432 YP_001922477.1 CDS CLH_3100 NC_010723.1 3349512 3350801 R hypothetical protein complement(3349512..3350801) Clostridium botulinum E3 str. Alaska E43 6318544 YP_001922478.1 CDS CLH_3101 NC_010723.1 3350812 3352071 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(3350812..3352071) Clostridium botulinum E3 str. Alaska E43 6319202 YP_001922479.1 CDS CLH_3102 NC_010723.1 3352447 3353337 R identified by match to protein family HMM PF02687; cell-division protein complement(3352447..3353337) Clostridium botulinum E3 str. Alaska E43 6320513 YP_001922480.1 CDS ftsE NC_010723.1 3353327 3354013 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE complement(3353327..3354013) Clostridium botulinum E3 str. Alaska E43 6320351 YP_001922481.1 CDS CLH_3104 NC_010723.1 3354131 3354982 R identified by match to protein family HMM PF02588; transporter complement(3354131..3354982) Clostridium botulinum E3 str. Alaska E43 6318711 YP_001922483.1 CDS CLH_3106 NC_010723.1 3355387 3356331 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase complement(3355387..3356331) Clostridium botulinum E3 str. Alaska E43 6317498 YP_001922484.1 CDS CLH_3107 NC_010723.1 3356331 3357155 R identified by match to protein family HMM PF00456; transketolase complement(3356331..3357155) Clostridium botulinum E3 str. Alaska E43 6320487 YP_001922485.1 CDS CLH_3108 NC_010723.1 3357430 3357783 R identified by match to protein family HMM PF02452; endoribonuclease endoA complement(3357430..3357783) Clostridium botulinum E3 str. Alaska E43 6317956 YP_001922486.1 CDS CLH_3109 NC_010723.1 3357793 3358047 R hypothetical protein complement(3357793..3358047) Clostridium botulinum E3 str. Alaska E43 6320543 YP_001922487.1 CDS CLH_3110 NC_010723.1 3358415 3359044 R putative membrane associated protein complement(3358415..3359044) Clostridium botulinum E3 str. Alaska E43 6317866 YP_001922488.1 CDS CLH_3111 NC_010723.1 3359110 3360609 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; YjeF family protein complement(3359110..3360609) Clostridium botulinum E3 str. Alaska E43 6317368 YP_001922489.1 CDS acpS NC_010723.1 3360611 3360982 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3360611..3360982) Clostridium botulinum E3 str. Alaska E43 6319652 YP_001922490.1 CDS CLH_3113 NC_010723.1 3361057 3361380 R hypothetical protein complement(3361057..3361380) Clostridium botulinum E3 str. Alaska E43 6319303 YP_001922491.1 CDS CLH_3114 NC_010723.1 3362326 3362673 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family complement(3362326..3362673) Clostridium botulinum E3 str. Alaska E43 6318066 YP_001922492.1 CDS CLH_3115 NC_010723.1 3362745 3363593 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein complement(3362745..3363593) Clostridium botulinum E3 str. Alaska E43 6317920 YP_001922493.1 CDS CLH_3116 NC_010723.1 3363946 3365262 R identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase complement(3363946..3365262) Clostridium botulinum E3 str. Alaska E43 6317586 YP_001922494.1 CDS CLH_3117 NC_010723.1 3365263 3365853 R identified by match to protein family HMM PF00132; hexapeptide transferase family protein complement(3365263..3365853) Clostridium botulinum E3 str. Alaska E43 6319650 YP_001922495.1 CDS CLH_3118 NC_010723.1 3365867 3367048 R identified by match to protein family HMM PF01041; match to protein family HMM PF01212; erythromycin biosynthesis sensory transduction protein eryC1 complement(3365867..3367048) Clostridium botulinum E3 str. Alaska E43 6320212 YP_001922496.1 CDS CLH_3119 NC_010723.1 3367443 3368036 R identified by match to protein family HMM PF08876; hypothetical protein complement(3367443..3368036) Clostridium botulinum E3 str. Alaska E43 6318638 YP_001922497.1 CDS CLH_3120 NC_010723.1 3368656 3368901 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; transcriptional regulator, AbrB family 3368656..3368901 Clostridium botulinum E3 str. Alaska E43 6317511 YP_001922498.1 CDS CLH_3121 NC_010723.1 3368967 3369812 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(3368967..3369812) Clostridium botulinum E3 str. Alaska E43 6319700 YP_001922499.1 CDS CLH_3122 NC_010723.1 3369814 3370566 R identified by match to protein family HMM PF05175; SAM-dependent methyltransferase complement(3369814..3370566) Clostridium botulinum E3 str. Alaska E43 6319800 YP_001922500.1 CDS CLH_3123 NC_010723.1 3370810 3372084 R identified by match to protein family HMM PF00877; SagA protein complement(3370810..3372084) Clostridium botulinum E3 str. Alaska E43 6318241 YP_001922501.1 CDS CLH_3124 NC_010723.1 3372526 3373170 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; haloacid dehalogenase 3372526..3373170 Clostridium botulinum E3 str. Alaska E43 6320495 YP_001922502.1 CDS CLH_3125 NC_010723.1 3373389 3374132 R identified by match to protein family HMM PF00639; foldase protein PrsA complement(3373389..3374132) Clostridium botulinum E3 str. Alaska E43 6319538 YP_001922503.1 CDS ung NC_010723.1 3374263 3374940 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3374263..3374940 Clostridium botulinum E3 str. Alaska E43 6319735 YP_001922504.1 CDS CLH_3127 NC_010723.1 3375166 3375363 R hypothetical protein complement(3375166..3375363) Clostridium botulinum E3 str. Alaska E43 6320031 YP_001922505.1 CDS CLH_3128 NC_010723.1 3375750 3376169 D hypothetical protein 3375750..3376169 Clostridium botulinum E3 str. Alaska E43 6318420 YP_001922506.1 CDS CLH_3131 NC_010723.1 3376859 3377350 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis mog protein complement(3376859..3377350) Clostridium botulinum E3 str. Alaska E43 6320090 YP_001922507.1 CDS CLH_3132 NC_010723.1 3377787 3378242 R identified by match to protein family HMM PF06445; AraC family transcriptional regulator complement(3377787..3378242) Clostridium botulinum E3 str. Alaska E43 6317241 YP_001922508.1 CDS CLH_3133 NC_010723.1 3378310 3379206 R identified by match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR-family transcriptional regulator complement(3378310..3379206) Clostridium botulinum E3 str. Alaska E43 6318000 YP_001922509.1 CDS CLH_3134 NC_010723.1 3379362 3379913 R identified by match to protein family HMM PF05685; hypothetical protein complement(3379362..3379913) Clostridium botulinum E3 str. Alaska E43 6319958 YP_001922510.1 CDS CLH_3135 NC_010723.1 3380139 3380693 R identified by match to protein family HMM PF00583; acetyltransferase, GNAT family complement(3380139..3380693) Clostridium botulinum E3 str. Alaska E43 6319807 YP_001922511.1 CDS CLH_3136 NC_010723.1 3380827 3381564 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 3380827..3381564 Clostridium botulinum E3 str. Alaska E43 6318884 YP_001922512.1 CDS CLH_3137 NC_010723.1 3381747 3382664 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A complement(3381747..3382664) Clostridium botulinum E3 str. Alaska E43 6319723 YP_001922513.1 CDS lpdA NC_010723.1 3382657 3384357 R identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase complement(3382657..3384357) Clostridium botulinum E3 str. Alaska E43 6318738 YP_001922514.1 CDS CLH_3139 NC_010723.1 3384449 3384802 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase AhpD domain-containing protein complement(3384449..3384802) Clostridium botulinum E3 str. Alaska E43 6317843 YP_001922515.1 CDS CLH_3140 NC_010723.1 3384906 3385334 R identified by match to protein family HMM PF01047; transcriptional regulator, MarR family complement(3384906..3385334) Clostridium botulinum E3 str. Alaska E43 6318286 YP_001922516.1 CDS CLH_3141 NC_010723.1 3385732 3385902 R nitrogen-fixing NifU domain-containing protein complement(3385732..3385902) Clostridium botulinum E3 str. Alaska E43 6319492 YP_001922517.1 CDS CLH_3142 NC_010723.1 3386269 3386718 D hypothetical protein 3386269..3386718 Clostridium botulinum E3 str. Alaska E43 6318367 YP_001922518.1 CDS CLH_3143 NC_010723.1 3386998 3388008 R identified by match to protein family HMM PF02517; caax amino protease family protein complement(3386998..3388008) Clostridium botulinum E3 str. Alaska E43 6318197 YP_001922519.1 CDS CLH_3144 NC_010723.1 3388247 3388732 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA family protein complement(3388247..3388732) Clostridium botulinum E3 str. Alaska E43 6317733 YP_001922520.1 CDS CLH_3145 NC_010723.1 3388756 3389364 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(3388756..3389364) Clostridium botulinum E3 str. Alaska E43 6318755 YP_001922521.1 CDS CLH_3146 NC_010723.1 3389606 3390559 R identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase complement(3389606..3390559) Clostridium botulinum E3 str. Alaska E43 6320370 YP_001922522.1 CDS CLH_3147 NC_010723.1 3390678 3390914 R hypothetical protein complement(3390678..3390914) Clostridium botulinum E3 str. Alaska E43 6320250 YP_001922523.1 CDS fusA NC_010723.1 3391078 3393159 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3391078..3393159) Clostridium botulinum E3 str. Alaska E43 6317591 YP_001922524.1 CDS CLH_3149 NC_010723.1 3393466 3394962 D hypothetical protein 3393466..3394962 Clostridium botulinum E3 str. Alaska E43 6318826 YP_001922525.1 CDS CLH_3150 NC_010723.1 3395187 3397004 D identified by match to protein family HMM PF00884; sulfatase family protein 3395187..3397004 Clostridium botulinum E3 str. Alaska E43 6318873 YP_001922526.1 CDS CLH_3151 NC_010723.1 3397359 3399179 D identified by match to protein family HMM PF00884; sulfatase family protein 3397359..3399179 Clostridium botulinum E3 str. Alaska E43 6319363 YP_001922527.1 CDS CLH_3152 NC_010723.1 3399311 3400846 R identified by match to protein family HMM PF02667; match to protein family HMM PF03606; match to protein family HMM PF03806; aminobenzoyl-glutamate transport protein complement(3399311..3400846) Clostridium botulinum E3 str. Alaska E43 6319168 YP_001922528.1 CDS CLH_3153 NC_010723.1 3401085 3401543 R identified by match to protein family HMM PF04892; acetobutylicum phosphotransbutyrylase complement(3401085..3401543) Clostridium botulinum E3 str. Alaska E43 6318190 YP_001922529.1 CDS CLH_3154 NC_010723.1 3401714 3402151 R hypothetical protein complement(3401714..3402151) Clostridium botulinum E3 str. Alaska E43 6320616 YP_001922530.1 CDS CLH_3155 NC_010723.1 3402483 3402881 D putative lipoprotein 3402483..3402881 Clostridium botulinum E3 str. Alaska E43 6318995 YP_001922531.1 CDS glgD NC_010723.1 3408523 3409629 R identified by match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit complement(3408523..3409629) Clostridium botulinum E3 str. Alaska E43 6320139 YP_001922532.1 CDS glgC NC_010723.1 3409651 3410811 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3409651..3410811) Clostridium botulinum E3 str. Alaska E43 6320523 YP_001922533.1 CDS CLH_3164 NC_010723.1 3410909 3412723 R identified by match to protein family HMM PF00128; amylopullulanase complement(3410909..3412723) Clostridium botulinum E3 str. Alaska E43 6318150 YP_001922534.1 CDS CLH_3165 NC_010723.1 3412892 3415333 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(3412892..3415333) Clostridium botulinum E3 str. Alaska E43 6319718 YP_001922535.1 CDS glgA NC_010723.1 3415364 3416800 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(3415364..3416800) Clostridium botulinum E3 str. Alaska E43 6319896 YP_001922536.1 CDS glgB NC_010723.1 3416943 3419189 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3416943..3419189) Clostridium botulinum E3 str. Alaska E43 6319704 YP_001922537.1 CDS CLH_3168 NC_010723.1 3419835 3419954 R identified by glimmer; putative; hypothetical protein complement(3419835..3419954) Clostridium botulinum E3 str. Alaska E43 6318231 YP_001922538.1 CDS ptbA NC_010723.1 3425723 3426214 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, glucose subfamily, IIA component 3425723..3426214 Clostridium botulinum E3 str. Alaska E43 6318900 YP_001922539.1 CDS CLH_3174 NC_010723.1 3426300 3427952 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, glucose-like IIB component complement(3426300..3427952) Clostridium botulinum E3 str. Alaska E43 6320037 YP_001922540.1 CDS CLH_3175 NC_010723.1 3428196 3429050 R identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator LicT complement(3428196..3429050) Clostridium botulinum E3 str. Alaska E43 6319072 YP_001922541.1 CDS CLH_3176 NC_010723.1 3429271 3430218 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(3429271..3430218) Clostridium botulinum E3 str. Alaska E43 6318707 YP_001922542.1 CDS CLH_3177 NC_010723.1 3430340 3430606 R hypothetical protein complement(3430340..3430606) Clostridium botulinum E3 str. Alaska E43 6318203 YP_001922543.1 CDS CLH_3178 NC_010723.1 3430659 3431003 R identified by glimmer; putative; hypothetical protein complement(3430659..3431003) Clostridium botulinum E3 str. Alaska E43 6319802 YP_001922544.1 CDS CLH_3179 NC_010723.1 3431562 3432920 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(3431562..3432920) Clostridium botulinum E3 str. Alaska E43 6317629 YP_001922545.1 CDS CLH_3180 NC_010723.1 3433381 3433542 R identified by match to protein family HMM PF02599; putative carbon storage regulator complement(3433381..3433542) Clostridium botulinum E3 str. Alaska E43 6319382 YP_001922546.1 CDS CLH_3181 NC_010723.1 3434052 3435980 R identified by match to protein family HMM PF05976; hypothetical protein complement(3434052..3435980) Clostridium botulinum E3 str. Alaska E43 6318584 YP_001922547.1 CDS CLH_3182 NC_010723.1 3436490 3437257 R identified by match to protein family HMM PF00899; thiF domain-containing protein complement(3436490..3437257) Clostridium botulinum E3 str. Alaska E43 6320504 YP_001922548.1 CDS mtnN NC_010723.1 3437834 3438526 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3437834..3438526 Clostridium botulinum E3 str. Alaska E43 6319646 YP_001922549.1 CDS CLH_3184 NC_010723.1 3438588 3439940 R identified by match to protein family HMM PF01473; surface protein PspC complement(3438588..3439940) Clostridium botulinum E3 str. Alaska E43 6320459 YP_001922550.1 CDS CLH_3185 NC_010723.1 3440118 3441269 R identified by match to protein family HMM PF07907; membrane protein, YbiE/YbiF family complement(3440118..3441269) Clostridium botulinum E3 str. Alaska E43 6320401 YP_001922551.1 CDS CLH_3186 NC_010723.1 3441468 3445979 R identified by match to protein family HMM PF01336; OB-fold nucleic acid binding domain-containing protein complement(3441468..3445979) Clostridium botulinum E3 str. Alaska E43 6318120 YP_001922552.1 CDS CLH_3187 NC_010723.1 3446341 3447471 R identified by match to protein family HMM PF01473; surface protein PspC complement(3446341..3447471) Clostridium botulinum E3 str. Alaska E43 6318929 YP_001922553.1 CDS CLH_3188 NC_010723.1 3447535 3448875 R identified by glimmer; putative; hypothetical protein complement(3447535..3448875) Clostridium botulinum E3 str. Alaska E43 6318507 YP_001922554.1 CDS CLH_3189 NC_010723.1 3448929 3449567 R identified by glimmer; putative; hypothetical protein complement(3448929..3449567) Clostridium botulinum E3 str. Alaska E43 6320610 YP_001922555.1 CDS CLH_3190 NC_010723.1 3449709 3450176 R identified by match to protein family HMM PF04892; acetobutylicum phosphotransbutyrylase complement(3449709..3450176) Clostridium botulinum E3 str. Alaska E43 6317317 YP_001922556.1 CDS CLH_3191 NC_010723.1 3450540 3451625 D identified by match to protein family HMM PF01473; surface protein PspC 3450540..3451625 Clostridium botulinum E3 str. Alaska E43 6318803 YP_001922557.1 CDS CLH_3192 NC_010723.1 3451730 3453421 R identified by match to protein family HMM PF08011; hypothetical protein complement(3451730..3453421) Clostridium botulinum E3 str. Alaska E43 6319455 YP_001922558.1 CDS CLH_3193 NC_010723.1 3453575 3454555 R identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714; hypothetical protein complement(3453575..3454555) Clostridium botulinum E3 str. Alaska E43 6320489 YP_001922559.1 CDS galU NC_010723.1 3454865 3455743 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(3454865..3455743) Clostridium botulinum E3 str. Alaska E43 6317763 YP_001922560.1 CDS rfbB NC_010723.1 3455897 3456949 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(3455897..3456949) Clostridium botulinum E3 str. Alaska E43 6318691 YP_001922561.1 CDS rfbD NC_010723.1 3457032 3457925 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase complement(3457032..3457925) Clostridium botulinum E3 str. Alaska E43 6318610 YP_001922562.1 CDS rfbC NC_010723.1 3458012 3458590 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3458012..3458590) Clostridium botulinum E3 str. Alaska E43 6317749 YP_001922563.1 CDS rfbA NC_010723.1 3458613 3459512 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(3458613..3459512) Clostridium botulinum E3 str. Alaska E43 6317304 YP_001922564.1 CDS CLH_3199 NC_010723.1 3459920 3460750 R identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase complement(3459920..3460750) Clostridium botulinum E3 str. Alaska E43 6320056 YP_001922565.1 CDS CLH_3200 NC_010723.1 3460769 3461773 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(3460769..3461773) Clostridium botulinum E3 str. Alaska E43 6317797 YP_001922566.1 CDS CLH_3201 NC_010723.1 3461900 3462994 R hypothetical protein complement(3461900..3462994) Clostridium botulinum E3 str. Alaska E43 6318689 YP_001922567.1 CDS CLH_3202 NC_010723.1 3463490 3464575 R hypothetical protein complement(3463490..3464575) Clostridium botulinum E3 str. Alaska E43 6318778 YP_001922568.1 CDS CLH_3203 NC_010723.1 3465055 3466464 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; putative polysaccharide transporter complement(3465055..3466464) Clostridium botulinum E3 str. Alaska E43 6318311 YP_001922569.1 CDS CLH_3204 NC_010723.1 3466451 3467149 R identified by match to protein family HMM PF04488; hypothetical protein complement(3466451..3467149) Clostridium botulinum E3 str. Alaska E43 6318101 YP_001922570.1 CDS CLH_3205 NC_010723.1 3467163 3468137 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(3467163..3468137) Clostridium botulinum E3 str. Alaska E43 6320492 YP_001922571.1 CDS CLH_3206 NC_010723.1 3468138 3468968 R identified by match to protein family HMM PF00535; hypothetical protein complement(3468138..3468968) Clostridium botulinum E3 str. Alaska E43 6318422 YP_001922572.1 CDS CLH_3207 NC_010723.1 3469014 3469733 R identified by match to protein family HMM PF00132; hypothetical protein complement(3469014..3469733) Clostridium botulinum E3 str. Alaska E43 6318672 YP_001922573.1 CDS CLH_3208 NC_010723.1 3469862 3470971 R identified by match to protein family HMM PF00534; hypothetical protein complement(3469862..3470971) Clostridium botulinum E3 str. Alaska E43 6318328 YP_001922574.1 CDS CLH_3209 NC_010723.1 3470993 3471712 R identified by match to protein family HMM PF00483; mannose-1-phosphate guanylyltransferase complement(3470993..3471712) Clostridium botulinum E3 str. Alaska E43 6319273 YP_001922575.1 CDS CLH_3210 NC_010723.1 3471726 3472397 R identified by match to protein family HMM PF02397; galactosyl transferase CpsE complement(3471726..3472397) Clostridium botulinum E3 str. Alaska E43 6317976 YP_001922576.1 CDS CLH_3211 NC_010723.1 3472799 3473566 R identified by match to protein family HMM PF02811; putative tyrosine-protein phosphatase CapC complement(3472799..3473566) Clostridium botulinum E3 str. Alaska E43 6319752 YP_001922577.1 CDS CLH_3212 NC_010723.1 3473746 3474489 R identified by match to protein family HMM TIGR01007; tyrosine-protein kinase etk complement(3473746..3474489) Clostridium botulinum E3 str. Alaska E43 6317986 YP_001922578.1 CDS CLH_3213 NC_010723.1 3474502 3475188 R identified by match to protein family HMM PF02706; capsular polysaccharide biosynthsis protein complement(3474502..3475188) Clostridium botulinum E3 str. Alaska E43 6318966 YP_001922579.1 CDS rfbC NC_010723.1 3475708 3476295 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3475708..3476295) Clostridium botulinum E3 str. Alaska E43 6320161 YP_001922580.1 CDS CLH_3215 NC_010723.1 3476405 3477724 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS/transporter domain-containing protein complement(3476405..3477724) Clostridium botulinum E3 str. Alaska E43 6319329 YP_001922581.1 CDS CLH_3216 NC_010723.1 3478080 3479336 R identified by match to protein family HMM PF06245; hypothetical protein complement(3478080..3479336) Clostridium botulinum E3 str. Alaska E43 6319316 YP_001922582.1 CDS CLH_3217 NC_010723.1 3479719 3480627 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-3-phosphoglycerate dehydrogenase complement(3479719..3480627) Clostridium botulinum E3 str. Alaska E43 6317488 YP_001922583.1 CDS CLH_3218 NC_010723.1 3480925 3481998 R identified by match to protein family HMM PF00266; aspartate aminotransferase complement(3480925..3481998) Clostridium botulinum E3 str. Alaska E43 6320131 YP_001922584.1 CDS CLH_3219 NC_010723.1 3482696 3482881 R hypothetical protein complement(3482696..3482881) Clostridium botulinum E3 str. Alaska E43 6319969 YP_001922585.1 CDS CLH_3220 NC_010723.1 3482971 3484185 R ABC transporter permease complement(3482971..3484185) Clostridium botulinum E3 str. Alaska E43 6320572 YP_001922586.1 CDS CLH_3221 NC_010723.1 3484186 3485100 R identified by match to protein family HMM PF00005; bacitracin transport ATP-binding protein BcrA complement(3484186..3485100) Clostridium botulinum E3 str. Alaska E43 6317311 YP_001922587.1 CDS CLH_3222 NC_010723.1 3485449 3485697 R identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862; sigma-K factor-processing regulatory protein BofA complement(3485449..3485697) Clostridium botulinum E3 str. Alaska E43 6317345 YP_001922588.1 CDS CLH_3223 NC_010723.1 3485715 3485990 R hypothetical protein complement(3485715..3485990) Clostridium botulinum E3 str. Alaska E43 6317894 YP_001922589.1 CDS recR NC_010723.1 3486398 3486994 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(3486398..3486994) Clostridium botulinum E3 str. Alaska E43 6317363 YP_001922590.1 CDS CLH_3225 NC_010723.1 3487245 3487586 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(3487245..3487586) Clostridium botulinum E3 str. Alaska E43 6317420 YP_001922591.1 CDS dnaX NC_010723.1 3487665 3489305 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(3487665..3489305) Clostridium botulinum E3 str. Alaska E43 6318750 YP_001922592.1 CDS thyA NC_010723.1 3489575 3490366 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3489575..3490366 Clostridium botulinum E3 str. Alaska E43 6318294 YP_001922593.1 CDS folA NC_010723.1 3490478 3490972 D identified by match to protein family HMM PF00186; dihydrofolate reductase 3490478..3490972 Clostridium botulinum E3 str. Alaska E43 6317990 YP_001922594.1 CDS CLH_3229 NC_010723.1 3491970 3492152 R hypothetical protein complement(3491970..3492152) Clostridium botulinum E3 str. Alaska E43 6317556 YP_001922595.1 CDS CLH_3231 NC_010723.1 3492679 3493221 R identified by match to protein family HMM PF01569; PAP2 family protein complement(3492679..3493221) Clostridium botulinum E3 str. Alaska E43 6320406 YP_001922596.1 CDS CLH_3232 NC_010723.1 3493300 3493773 R identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase complement(3493300..3493773) Clostridium botulinum E3 str. Alaska E43 6320281 YP_001922597.1 CDS CLH_3233 NC_010723.1 3494101 3495354 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative membrane CBS domain-containing protein complement(3494101..3495354) Clostridium botulinum E3 str. Alaska E43 6319811 YP_001922598.1 CDS CLH_3234 NC_010723.1 3495713 3496651 R identified by match to protein family HMM PF00294; fructokinase complement(3495713..3496651) Clostridium botulinum E3 str. Alaska E43 6318228 YP_001922599.1 CDS CLH_3235 NC_010723.1 3496644 3498104 R identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase complement(3496644..3498104) Clostridium botulinum E3 str. Alaska E43 6317810 YP_001922600.1 CDS CLH_3236 NC_010723.1 3498123 3499115 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose repressor complement(3498123..3499115) Clostridium botulinum E3 str. Alaska E43 6320570 YP_001922601.1 CDS CLH_3237 NC_010723.1 3499291 3500646 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996; PTS system sucrose-specific transporter subunit IIBC complement(3499291..3500646) Clostridium botulinum E3 str. Alaska E43 6319070 YP_001922602.1 CDS CLH_3238 NC_010723.1 3501149 3501310 R identified by glimmer; putative; hypothetical protein complement(3501149..3501310) Clostridium botulinum E3 str. Alaska E43 6320511 YP_001922603.1 CDS CLH_3239 NC_010723.1 3501467 3501871 R identified by glimmer; putative; hypothetical protein complement(3501467..3501871) Clostridium botulinum E3 str. Alaska E43 6319901 YP_001922604.1 CDS CLH_3240 NC_010723.1 3502082 3502549 R identified by glimmer; putative; hypothetical protein complement(3502082..3502549) Clostridium botulinum E3 str. Alaska E43 6319861 YP_001922605.1 CDS trpA NC_010723.1 3502987 3503754 R identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha complement(3502987..3503754) Clostridium botulinum E3 str. Alaska E43 6319188 YP_001922606.1 CDS CLH_3242 NC_010723.1 3503708 3504856 R identified by match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase complement(3503708..3504856) Clostridium botulinum E3 str. Alaska E43 6318534 YP_001922607.1 CDS CLH_3243 NC_010723.1 3504967 3505761 R identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein complement(3504967..3505761) Clostridium botulinum E3 str. Alaska E43 6320280 YP_001922608.1 CDS CLH_3245 NC_010723.1 3505712 3505825 D identified by glimmer; putative; hypothetical protein 3505712..3505825 Clostridium botulinum E3 str. Alaska E43 6317644 YP_001922609.1 CDS CLH_3244 NC_010723.1 3505784 3506539 R identified by match to protein family HMM PF01048; uridine phosphorylase complement(3505784..3506539) Clostridium botulinum E3 str. Alaska E43 6318843 YP_001922610.1 CDS CLH_3246 NC_010723.1 3506539 3507489 R identified by match to protein family HMM PF00294; kinase, PfkB family complement(3506539..3507489) Clostridium botulinum E3 str. Alaska E43 6318875 YP_001922611.1 CDS CLH_3247 NC_010723.1 3507505 3508071 R identified by match to protein family HMM PF00857; isochorismatase family protein complement(3507505..3508071) Clostridium botulinum E3 str. Alaska E43 6320417 YP_001922612.1 CDS CLH_3248 NC_010723.1 3508091 3509005 R identified by match to protein family HMM PF02653; inner-membrane translocator complement(3508091..3509005) Clostridium botulinum E3 str. Alaska E43 6318340 YP_001922613.1 CDS CLH_3249 NC_010723.1 3509005 3510066 R identified by match to protein family HMM PF02653; sugar ABC transporter permease complement(3509005..3510066) Clostridium botulinum E3 str. Alaska E43 6319208 YP_001922614.1 CDS CLH_3250 NC_010723.1 3510063 3511610 R identified by match to protein family HMM PF00005; ribose import ATP-binding protein RbsA complement(3510063..3511610) Clostridium botulinum E3 str. Alaska E43 6318549 YP_001922615.1 CDS CLH_3251 NC_010723.1 3511632 3512816 R identified by match to protein family HMM PF02608; putative basic membrane lipoprotein complement(3511632..3512816) Clostridium botulinum E3 str. Alaska E43 6319435 YP_001922616.1 CDS CLH_3252 NC_010723.1 3512882 3513610 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; transcriptional regulator complement(3512882..3513610) Clostridium botulinum E3 str. Alaska E43 6317569 YP_001922617.1 CDS CLH_3253 NC_010723.1 3514078 3514803 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; transcriptional regulator complement(3514078..3514803) Clostridium botulinum E3 str. Alaska E43 6317357 YP_001922618.1 CDS CLH_3255 NC_010723.1 3515493 3516149 R identified by glimmer; putative; hypothetical protein complement(3515493..3516149) Clostridium botulinum E3 str. Alaska E43 6317589 YP_001922619.1 CDS CLH_3256 NC_010723.1 3516173 3518545 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; P-type ATPase - metal cation transport complement(3516173..3518545) Clostridium botulinum E3 str. Alaska E43 6318904 YP_001922620.1 CDS CLH_3257 NC_010723.1 3518844 3519563 D identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3518844..3519563 Clostridium botulinum E3 str. Alaska E43 6318511 YP_001922621.1 CDS CLH_3258 NC_010723.1 3519719 3521299 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase DbpA 3519719..3521299 Clostridium botulinum E3 str. Alaska E43 6317942 YP_001922622.1 CDS CLH_3259 NC_010723.1 3521347 3521868 R identified by glimmer; putative; hypothetical protein complement(3521347..3521868) Clostridium botulinum E3 str. Alaska E43 6319364 YP_001922623.1 CDS CLH_3260 NC_010723.1 3521968 3522588 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD superfamily hydrolase complement(3521968..3522588) Clostridium botulinum E3 str. Alaska E43 6318068 YP_001922624.1 CDS CLH_3261 NC_010723.1 3523032 3523979 R identified by match to protein family HMM PF01636; putative phosphotransferase enzyme family complement(3523032..3523979) Clostridium botulinum E3 str. Alaska E43 6318662 YP_001922625.1 CDS CLH_3262 NC_010723.1 3524172 3524330 R identified by match to protein family HMM PF07561; hypothetical protein complement(3524172..3524330) Clostridium botulinum E3 str. Alaska E43 6317808 YP_001922626.1 CDS CLH_3263 NC_010723.1 3524598 3525686 D hypothetical protein 3524598..3525686 Clostridium botulinum E3 str. Alaska E43 6320120 YP_001922627.1 CDS CLH_3264 NC_010723.1 3526109 3527053 R identified by match to protein family HMM PF01497; ferric siderophore ABC transporter,substrate-binding protein complement(3526109..3527053) Clostridium botulinum E3 str. Alaska E43 6319141 YP_001922628.1 CDS CLH_3265 NC_010723.1 3527325 3528080 R identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC complement(3527325..3528080) Clostridium botulinum E3 str. Alaska E43 6317566 YP_001922629.1 CDS CLH_3266 NC_010723.1 3528077 3529027 R identified by match to protein family HMM PF01032; iron chelate uptake ABC transporter permease complement(3528077..3529027) Clostridium botulinum E3 str. Alaska E43 6318284 YP_001922630.1 CDS CLH_3267 NC_010723.1 3529017 3529970 R identified by match to protein family HMM PF01032; iron chelate uptake ABC transporter permease complement(3529017..3529970) Clostridium botulinum E3 str. Alaska E43 6318850 YP_001922631.1 CDS CLH_3268 NC_010723.1 3530163 3530924 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3530163..3530924 Clostridium botulinum E3 str. Alaska E43 6317380 YP_001922632.1 CDS CLH_3269 NC_010723.1 3531449 3533110 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease family protein complement(3531449..3533110) Clostridium botulinum E3 str. Alaska E43 6320020 YP_001922633.1 CDS dapA NC_010723.1 3533707 3534579 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(3533707..3534579) Clostridium botulinum E3 str. Alaska E43 6319894 YP_001922634.1 CDS CLH_3271 NC_010723.1 3534688 3534804 R identified by glimmer; putative; hypothetical protein complement(3534688..3534804) Clostridium botulinum E3 str. Alaska E43 6319040 YP_001922635.1 CDS CLH_3272 NC_010723.1 3535472 3536275 D hypothetical protein 3535472..3536275 Clostridium botulinum E3 str. Alaska E43 6319087 YP_001922636.1 CDS CLH_3273 NC_010723.1 3536627 3537376 R identified by match to protein family HMM PF01925; transporter complement(3536627..3537376) Clostridium botulinum E3 str. Alaska E43 6317372 YP_001922637.1 CDS CLH_3274 NC_010723.1 3537460 3538140 R identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; integral membrane protein complement(3537460..3538140) Clostridium botulinum E3 str. Alaska E43 6318217 YP_003264530.1 CDS CLH_3284 NC_010723.1 3550522 3550650 R Gfo/Idh/MocA family; oxidoreductase complement(3550522..3550650) Clostridium botulinum E3 str. Alaska E43 8538026 YP_001922638.1 CDS CLH_3297 NC_010723.1 3567889 3568788 R identified by match to protein family HMM PF01734; phospholipase, patatin family complement(3567889..3568788) Clostridium botulinum E3 str. Alaska E43 6320137 YP_001922639.1 CDS CLH_3298 NC_010723.1 3568822 3569640 R identified by match to protein family HMM PF03618; hypothetical protein complement(3568822..3569640) Clostridium botulinum E3 str. Alaska E43 6319705 YP_001922640.1 CDS CLH_3299 NC_010723.1 3570103 3570861 D hypothetical protein 3570103..3570861 Clostridium botulinum E3 str. Alaska E43 6318323 YP_001922641.1 CDS CLH_3300 NC_010723.1 3571083 3572276 D identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; GTP-binding protein 3571083..3572276 Clostridium botulinum E3 str. Alaska E43 6318986 YP_001922642.1 CDS motB NC_010723.1 3573165 3573899 R identified by match to protein family HMM PF00691; chemotaxis MotB protein complement(3573165..3573899) Clostridium botulinum E3 str. Alaska E43 6320091 YP_001922643.1 CDS CLH_3304 NC_010723.1 3573904 3574680 R identified by match to protein family HMM PF01618; chemotaxis protein MotA complement(3573904..3574680) Clostridium botulinum E3 str. Alaska E43 6319815 YP_001922644.1 CDS CLH_3305 NC_010723.1 3574996 3575943 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(3574996..3575943) Clostridium botulinum E3 str. Alaska E43 6318521 YP_001922645.1 CDS CLH_3311 NC_010723.1 3582004 3584043 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative methyl-accepting chemotaxis protein 3582004..3584043 Clostridium botulinum E3 str. Alaska E43 6317852 YP_001922646.1 CDS CLH_3312 NC_010723.1 3584248 3585258 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; two-component sensor histidine kinase complement(3584248..3585258) Clostridium botulinum E3 str. Alaska E43 6320102 YP_001922647.1 CDS CLH_3313 NC_010723.1 3585255 3585926 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(3585255..3585926) Clostridium botulinum E3 str. Alaska E43 6320253 YP_001922648.1 CDS CLH_3314 NC_010723.1 3586051 3588066 R identified by match to protein family HMM PF02687; ABC transporter permease complement(3586051..3588066) Clostridium botulinum E3 str. Alaska E43 6318184 YP_001922649.1 CDS CLH_3315 NC_010723.1 3588056 3588823 R identified by match to protein family HMM PF00005; bacitracin export ATP-binding protein BceA complement(3588056..3588823) Clostridium botulinum E3 str. Alaska E43 6318522 YP_001922650.1 CDS CLH_3316 NC_010723.1 3589194 3589625 R identified by match to protein family HMM PF01047; transcriptional regulator, MarR family complement(3589194..3589625) Clostridium botulinum E3 str. Alaska E43 6317824 YP_001922651.1 CDS CLH_3317 NC_010723.1 3589933 3590244 R identified by match to protein family HMM PF00085; thioredoxin complement(3589933..3590244) Clostridium botulinum E3 str. Alaska E43 6318656 YP_001922652.1 CDS CLH_3318 NC_010723.1 3590448 3591692 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein complement(3590448..3591692) Clostridium botulinum E3 str. Alaska E43 6317804 YP_001922653.1 CDS CLH_3319 NC_010723.1 3592169 3592804 R identified by glimmer; putative; hypothetical protein complement(3592169..3592804) Clostridium botulinum E3 str. Alaska E43 6319459 YP_001922654.1 CDS CLH_3320 NC_010723.1 3593016 3593408 R hypothetical protein complement(3593016..3593408) Clostridium botulinum E3 str. Alaska E43 6320324 YP_001922655.1 CDS CLH_3321 NC_010723.1 3593410 3593841 R identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family regulatory protein complement(3593410..3593841) Clostridium botulinum E3 str. Alaska E43 6317518 YP_001922656.1 CDS CLH_3322 NC_010723.1 3593860 3594318 R hypothetical protein complement(3593860..3594318) Clostridium botulinum E3 str. Alaska E43 6317331 YP_001922657.1 CDS CLH_3323 NC_010723.1 3594700 3595626 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase complement(3594700..3595626) Clostridium botulinum E3 str. Alaska E43 6317687 YP_001922658.1 CDS CLH_3324 NC_010723.1 3595643 3596455 R identified by match to protein family HMM PF00456; transketolase complement(3595643..3596455) Clostridium botulinum E3 str. Alaska E43 6320500 YP_001922659.1 CDS CLH_3325 NC_010723.1 3596535 3597884 R identified by match to protein family HMM PF04215; PTS system ascorbate-specific transporter subunit IIC complement(3596535..3597884) Clostridium botulinum E3 str. Alaska E43 6318492 YP_001922660.1 CDS CLH_3326 NC_010723.1 3597955 3598230 R identified by match to protein family HMM PF02302; PTS system mannitol-specific transporter subunit IIB complement(3597955..3598230) Clostridium botulinum E3 str. Alaska E43 6317470 YP_001922661.1 CDS CLH_3327 NC_010723.1 3598233 3598634 R identified by match to protein family HMM PF00359; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 complement(3598233..3598634) Clostridium botulinum E3 str. Alaska E43 6319024 YP_001922662.1 CDS CLH_3328 NC_010723.1 3598649 3600535 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302; match to protein family HMM PF08279; putative phosphotransferase system mannitol/fructose-specific IIA domain complement(3598649..3600535) Clostridium botulinum E3 str. Alaska E43 6318619 YP_001922663.1 CDS CLH_3329 NC_010723.1 3601138 3601614 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(3601138..3601614) Clostridium botulinum E3 str. Alaska E43 6318357 YP_001922664.1 CDS CLH_3330 NC_010723.1 3601827 3603491 R identified by match to protein family HMM PF00128; oligo-1,6-glucosidase complement(3601827..3603491) Clostridium botulinum E3 str. Alaska E43 6318828 YP_001922665.1 CDS CLH_3331 NC_010723.1 3603646 3604563 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(3603646..3604563) Clostridium botulinum E3 str. Alaska E43 6318866 YP_001922666.1 CDS CLH_3332 NC_010723.1 3605035 3606033 R identified by match to protein family HMM PF01384; phosphate permease complement(3605035..3606033) Clostridium botulinum E3 str. Alaska E43 6318058 YP_001922667.1 CDS CLH_3333 NC_010723.1 3606026 3606658 R identified by match to protein family HMM PF01865; hypothetical protein complement(3606026..3606658) Clostridium botulinum E3 str. Alaska E43 6320255 YP_001922668.1 CDS CLH_3334 NC_010723.1 3606956 3608623 D hypothetical protein 3606956..3608623 Clostridium botulinum E3 str. Alaska E43 6319542 YP_001922669.1 CDS CLH_3335 NC_010723.1 3609125 3610225 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 3609125..3610225 Clostridium botulinum E3 str. Alaska E43 6317467 YP_001922670.1 CDS CLH_3336 NC_010723.1 3610389 3610901 R flavodoxin family protein complement(3610389..3610901) Clostridium botulinum E3 str. Alaska E43 6317448 YP_001922671.1 CDS CLH_3337 NC_010723.1 3610958 3612058 R identified by match to protein family HMM PF00724; putative oxidoreductase complement(3610958..3612058) Clostridium botulinum E3 str. Alaska E43 6319563 YP_001922672.1 CDS CLH_3338 NC_010723.1 3612074 3612511 R identified by match to protein family HMM PF01047; MarR-family transcriptional regulator complement(3612074..3612511) Clostridium botulinum E3 str. Alaska E43 6318757 YP_001922673.1 CDS CLH_3339 NC_010723.1 3612723 3614021 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; putative ATP-dependent RNA helicase RhlE complement(3612723..3614021) Clostridium botulinum E3 str. Alaska E43 6319138 YP_001922674.1 CDS CLH_3340 NC_010723.1 3614352 3614504 R hypothetical protein complement(3614352..3614504) Clostridium botulinum E3 str. Alaska E43 6317388 YP_001922675.1 CDS CLH_3341 NC_010723.1 3614776 3615282 R membrane protein complement(3614776..3615282) Clostridium botulinum E3 str. Alaska E43 6320595 YP_001922676.1 CDS CLH_3342 NC_010723.1 3615445 3615924 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(3615445..3615924) Clostridium botulinum E3 str. Alaska E43 6317770 YP_001922677.1 CDS CLH_3343 NC_010723.1 3616214 3616873 R identified by match to protein family HMM PF06555; hypothetical protein complement(3616214..3616873) Clostridium botulinum E3 str. Alaska E43 6317408 YP_001922678.1 CDS CLH_3344 NC_010723.1 3617229 3617726 R identified by match to protein family HMM PF02810; hypothetical protein complement(3617229..3617726) Clostridium botulinum E3 str. Alaska E43 6318702 YP_001922679.1 CDS CLH_3345 NC_010723.1 3617789 3618580 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(3617789..3618580) Clostridium botulinum E3 str. Alaska E43 6318932 YP_001922680.1 CDS murA NC_010723.1 3618615 3619877 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3618615..3619877) Clostridium botulinum E3 str. Alaska E43 6319071 YP_001922681.1 CDS CLH_3347 NC_010723.1 3620271 3620810 D hypothetical protein 3620271..3620810 Clostridium botulinum E3 str. Alaska E43 6318161 YP_001922682.1 CDS CLH_3348 NC_010723.1 3620987 3621463 D identified by match to protein family HMM PF08761; dUTPase superfamily 3620987..3621463 Clostridium botulinum E3 str. Alaska E43 6319556 YP_001922683.1 CDS CLH_3349 NC_010723.1 3621653 3622084 D identified by match to protein family HMM PF04657; hypothetical protein 3621653..3622084 Clostridium botulinum E3 str. Alaska E43 6318687 YP_001922684.1 CDS CLH_3350 NC_010723.1 3622142 3622960 D identified by match to protein family HMM PF00753; metallo-beta-lactamase domain-containing protein 3622142..3622960 Clostridium botulinum E3 str. Alaska E43 6318894 YP_001922685.1 CDS CLH_3351 NC_010723.1 3623094 3624299 D identified by match to protein family HMM PF00082; subtilase family protein 3623094..3624299 Clostridium botulinum E3 str. Alaska E43 6317767 YP_001922686.1 CDS CLH_3352 NC_010723.1 3624409 3625542 R identified by match to protein family HMM PF01551; match to protein family HMM PF07501; peptidase, M23/M37 family complement(3624409..3625542) Clostridium botulinum E3 str. Alaska E43 6317842 YP_001922687.1 CDS CLH_3353 NC_010723.1 3625769 3626758 D identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 3625769..3626758 Clostridium botulinum E3 str. Alaska E43 6318730 YP_001922688.1 CDS CLH_3354 NC_010723.1 3626751 3627731 D acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3626751..3627731 Clostridium botulinum E3 str. Alaska E43 6318142 YP_001922689.1 CDS CLH_3366 NC_010723.1 3628932 3629516 R hypothetical protein complement(3628932..3629516) Clostridium botulinum E3 str. Alaska E43 6319368 YP_001922690.1 CDS CLH_3367 NC_010723.1 3629680 3630924 D identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 3629680..3630924 Clostridium botulinum E3 str. Alaska E43 6320213 YP_001922691.1 CDS CLH_3368 NC_010723.1 3631094 3631843 R identified by match to protein family HMM PF01643; acyl-ACP thioesterase complement(3631094..3631843) Clostridium botulinum E3 str. Alaska E43 6318040 YP_001922692.1 CDS CLH_3369 NC_010723.1 3632050 3632232 R hypothetical protein complement(3632050..3632232) Clostridium botulinum E3 str. Alaska E43 6317294 YP_001922693.1 CDS purA NC_010723.1 3632335 3633621 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3632335..3633621) Clostridium botulinum E3 str. Alaska E43 6318760 YP_001922694.1 CDS CLH_3371 NC_010723.1 3633845 3635017 D identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949; NAD-dependent malic enzyme 3633845..3635017 Clostridium botulinum E3 str. Alaska E43 6318993 YP_001922695.1 CDS proC NC_010723.1 3635718 3636518 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(3635718..3636518) Clostridium botulinum E3 str. Alaska E43 6317247 YP_001922696.1 CDS CLH_3373 NC_010723.1 3636733 3637086 D protein phosphatase 2C 3636733..3637086 Clostridium botulinum E3 str. Alaska E43 6320524 YP_001922697.1 CDS dnaB NC_010723.1 3637108 3638448 R unwinds double stranded DNA; replicative DNA helicase complement(3637108..3638448) Clostridium botulinum E3 str. Alaska E43 6318208 YP_001922698.1 CDS lonC NC_010723.1 3638535 3640427 R identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903; Lon family ATP-dependent protease complement(3638535..3640427) Clostridium botulinum E3 str. Alaska E43 6318028 YP_001922699.1 CDS rplI NC_010723.1 3640443 3640886 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3640443..3640886) Clostridium botulinum E3 str. Alaska E43 6319906 YP_001922700.1 CDS CLH_3377 NC_010723.1 3640889 3642829 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(3640889..3642829) Clostridium botulinum E3 str. Alaska E43 6317787 YP_001922701.1 CDS CLH_3378 NC_010723.1 3642854 3643174 R hypothetical protein complement(3642854..3643174) Clostridium botulinum E3 str. Alaska E43 6319903 YP_001922702.1 CDS rpsR NC_010723.1 3643362 3643613 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3643362..3643613) Clostridium botulinum E3 str. Alaska E43 6319970 YP_001922703.1 CDS CLH_3380 NC_010723.1 3643635 3644078 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(3643635..3644078) Clostridium botulinum E3 str. Alaska E43 6319608 YP_001922704.1 CDS rpsF NC_010723.1 3644092 3644382 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3644092..3644382) Clostridium botulinum E3 str. Alaska E43 6318062 YP_001922705.1 CDS CLH_3382 NC_010723.1 3644489 3644680 R identified by match to protein family HMM PF06107; hypothetical protein complement(3644489..3644680) Clostridium botulinum E3 str. Alaska E43 6320278 YP_001922706.1 CDS CLH_3383 NC_010723.1 3644680 3645573 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(3644680..3645573) Clostridium botulinum E3 str. Alaska E43 6318487 YP_001922707.1 CDS CLH_3384 NC_010723.1 3645601 3645840 R hypothetical protein complement(3645601..3645840) Clostridium botulinum E3 str. Alaska E43 6317385 YP_001922708.1 CDS CLH_3385 NC_010723.1 3646242 3646895 D identified by match to protein family HMM PF01810; LysE type translocator 3646242..3646895 Clostridium botulinum E3 str. Alaska E43 6318809 YP_001922709.1 CDS CLH_3386 NC_010723.1 3646911 3648068 D identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM TIGR01977; cysteine desulfurase 3646911..3648068 Clostridium botulinum E3 str. Alaska E43 6319845 YP_001922710.1 CDS CLH_3387 NC_010723.1 3648367 3648969 D identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; putative sporulation protein 3648367..3648969 Clostridium botulinum E3 str. Alaska E43 6318128 YP_001922711.1 CDS CLH_3388 NC_010723.1 3649266 3649784 R hypothetical protein complement(3649266..3649784) Clostridium botulinum E3 str. Alaska E43 6318494 YP_001922712.1 CDS CLH_3389 NC_010723.1 3649825 3650703 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J complement(3649825..3650703) Clostridium botulinum E3 str. Alaska E43 6320144 YP_001922713.1 CDS CLH_3390 NC_010723.1 3650717 3651481 R identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj complement(3650717..3651481) Clostridium botulinum E3 str. Alaska E43 6317474 YP_001922714.1 CDS CLH_3391 NC_010723.1 3651660 3652442 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; protein YyaA complement(3651660..3652442) Clostridium botulinum E3 str. Alaska E43 6319744 YP_001922715.1 CDS gidB NC_010723.1 3652673 3653392 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3652673..3653392) Clostridium botulinum E3 str. Alaska E43 6318141 YP_001922716.1 CDS gidA NC_010723.1 3653409 3655289 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3653409..3655289) Clostridium botulinum E3 str. Alaska E43 6318725 YP_001922717.1 CDS trmE NC_010723.1 3655299 3656669 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3655299..3656669) Clostridium botulinum E3 str. Alaska E43 6318520 YP_001922718.1 CDS CLH_3395 NC_010723.1 3657001 3657627 R identified by match to protein family HMM PF01424; protein jag complement(3657001..3657627) Clostridium botulinum E3 str. Alaska E43 6320177 YP_001922719.1 CDS CLH_3396 NC_010723.1 3657675 3658454 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(3657675..3658454) Clostridium botulinum E3 str. Alaska E43 6319545 YP_001922720.1 CDS rnpA NC_010723.1 3658661 3659038 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3658661..3659038) Clostridium botulinum E3 str. Alaska E43 6318345 YP_001922721.1 CDS rpmH NC_010723.1 3659101 3659235 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3659101..3659235) Clostridium botulinum E3 str. Alaska E43 6319606 CLH_0012 tRNA CLH_0012 NC_010723.1 14393 14469 D tRNA-Met 14393..14469 Clostridium botulinum E3 str. Alaska E43 6317805 CLH_0013 tRNA CLH_0013 NC_010723.1 14473 14550 D tRNA-Ala 14473..14550 Clostridium botulinum E3 str. Alaska E43 6317552 CLH_0019 tRNA CLH_0019 NC_010723.1 19191 19283 D tRNA-Ser 19191..19283 Clostridium botulinum E3 str. Alaska E43 6319874 CLH_0020 tRNA CLH_0020 NC_010723.1 19317 19409 D tRNA-Ser 19317..19409 Clostridium botulinum E3 str. Alaska E43 6320051 CLH_0021 tRNA CLH_0021 NC_010723.1 19681 19773 D tRNA-Ser 19681..19773 Clostridium botulinum E3 str. Alaska E43 6317928 CLH_0022 tRNA CLH_0022 NC_010723.1 19807 19899 D tRNA-Ser 19807..19899 Clostridium botulinum E3 str. Alaska E43 6320235 CLH_0030 tRNA CLH_0030 NC_010723.1 33008 33084 D tRNA-Arg 33008..33084 Clostridium botulinum E3 str. Alaska E43 6317675 CLH_0155 tRNA CLH_0155 NC_010723.1 177453 177541 D tRNA-Leu 177453..177541 Clostridium botulinum E3 str. Alaska E43 6319054 CLH_0156 tRNA CLH_0156 NC_010723.1 177560 177637 D tRNA-Met 177560..177637 Clostridium botulinum E3 str. Alaska E43 6319588 CLH_0157 tRNA CLH_0157 NC_010723.1 177647 177723 D tRNA-Met 177647..177723 Clostridium botulinum E3 str. Alaska E43 6318329 CLH_0158 tRNA CLH_0158 NC_010723.1 177728 177818 D tRNA-Leu 177728..177818 Clostridium botulinum E3 str. Alaska E43 6318369 CLH_0159 tRNA CLH_0159 NC_010723.1 177838 177915 D tRNA-Met 177838..177915 Clostridium botulinum E3 str. Alaska E43 6318018 CLH_0160 tRNA CLH_0160 NC_010723.1 177925 178001 D tRNA-Met 177925..178001 Clostridium botulinum E3 str. Alaska E43 6318458 CLH_0161 tRNA CLH_0161 NC_010723.1 178006 178096 D tRNA-Leu 178006..178096 Clostridium botulinum E3 str. Alaska E43 6318500 CLH_0172 tRNA CLH_0172 NC_010723.1 192067 192143 D tRNA-Asn 192067..192143 Clostridium botulinum E3 str. Alaska E43 6318385 CLH_0173 tRNA CLH_0173 NC_010723.1 192477 192553 D tRNA-Asn 192477..192553 Clostridium botulinum E3 str. Alaska E43 6320052 CLH_0174 tRNA CLH_0174 NC_010723.1 192887 192963 D tRNA-Asn 192887..192963 Clostridium botulinum E3 str. Alaska E43 6318529 CLH_0184 tRNA CLH_0184 NC_010723.1 204037 204114 D tRNA-Ala 204037..204114 Clostridium botulinum E3 str. Alaska E43 6318272 CLH_0185 tRNA CLH_0185 NC_010723.1 204117 204193 D tRNA-Ile 204117..204193 Clostridium botulinum E3 str. Alaska E43 6320575 CLH_0189 tRNA CLH_0189 NC_010723.1 207391 207468 D tRNA-Phe 207391..207468 Clostridium botulinum E3 str. Alaska E43 6318899 CLH_0190 tRNA CLH_0190 NC_010723.1 207469 207542 D tRNA-Cys 207469..207542 Clostridium botulinum E3 str. Alaska E43 6319165 CLH_0221 tRNA CLH_0221 NC_010723.1 233631 233706 D tRNA-Thr 233631..233706 Clostridium botulinum E3 str. Alaska E43 6319560 CLH_0406 tRNA CLH_0406 NC_010723.1 425451 425526 D tRNA-Pro 425451..425526 Clostridium botulinum E3 str. Alaska E43 6320359 CLH_0407 tRNA CLH_0407 NC_010723.1 425545 425618 D tRNA-Gly 425545..425618 Clostridium botulinum E3 str. Alaska E43 6317605 CLH_0409 tRNA CLH_0409 NC_010723.1 425854 425932 D tRNA-Arg 425854..425932 Clostridium botulinum E3 str. Alaska E43 6317848 CLH_0410 tRNA CLH_0410 NC_010723.1 425937 426014 D tRNA-Pro 425937..426014 Clostridium botulinum E3 str. Alaska E43 6318514 CLH_0411 tRNA CLH_0411 NC_010723.1 426036 426109 D tRNA-Gly 426036..426109 Clostridium botulinum E3 str. Alaska E43 6317494 CLH_0412 tRNA CLH_0412 NC_010723.1 426123 426201 D tRNA-Arg 426123..426201 Clostridium botulinum E3 str. Alaska E43 6317604 CLH_0413 tRNA CLH_0413 NC_010723.1 426205 426282 D tRNA-His 426205..426282 Clostridium botulinum E3 str. Alaska E43 6317677 CLH_0414 tRNA CLH_0414 NC_010723.1 426284 426360 D tRNA-Gln 426284..426360 Clostridium botulinum E3 str. Alaska E43 6320060 CLH_0415 tRNA CLH_0415 NC_010723.1 426365 426442 D tRNA-Lys 426365..426442 Clostridium botulinum E3 str. Alaska E43 6318459 CLH_0416 tRNA CLH_0416 NC_010723.1 426449 426535 D tRNA-Leu 426449..426535 Clostridium botulinum E3 str. Alaska E43 6318502 CLH_0417 tRNA CLH_0417 NC_010723.1 426539 426615 D tRNA-Gly 426539..426615 Clostridium botulinum E3 str. Alaska E43 6317929 CLH_0418 tRNA CLH_0418 NC_010723.1 426632 426705 D tRNA-Gly 426632..426705 Clostridium botulinum E3 str. Alaska E43 6318017 CLH_0419 tRNA CLH_0419 NC_010723.1 426717 426794 D tRNA-Lys 426717..426794 Clostridium botulinum E3 str. Alaska E43 6317306 CLH_0420 tRNA CLH_0420 NC_010723.1 426801 426878 D tRNA-His 426801..426878 Clostridium botulinum E3 str. Alaska E43 6317528 CLH_0421 tRNA CLH_0421 NC_010723.1 426883 426957 D tRNA-Gln 426883..426957 Clostridium botulinum E3 str. Alaska E43 6320234 CLH_0422 tRNA CLH_0422 NC_010723.1 426978 427055 D tRNA-Lys 426978..427055 Clostridium botulinum E3 str. Alaska E43 6317336 CLH_0423 tRNA CLH_0423 NC_010723.1 427060 427146 D tRNA-Leu 427060..427146 Clostridium botulinum E3 str. Alaska E43 6320407 CLH_0424 tRNA CLH_0424 NC_010723.1 427150 427226 D tRNA-Gly 427150..427226 Clostridium botulinum E3 str. Alaska E43 6319370 CLH_0425 tRNA CLH_0425 NC_010723.1 427240 427313 D tRNA-Gly 427240..427313 Clostridium botulinum E3 str. Alaska E43 6317862 CLH_0426 tRNA CLH_0426 NC_010723.1 427359 427435 D tRNA-Arg 427359..427435 Clostridium botulinum E3 str. Alaska E43 6320493 CLH_0431 tRNA CLH_0431 NC_010723.1 431007 431083 D tRNA-Ile 431007..431083 Clostridium botulinum E3 str. Alaska E43 6319048 CLH_0434 tRNA CLH_0434 NC_010723.1 434231 434307 D tRNA-Asn 434231..434307 Clostridium botulinum E3 str. Alaska E43 6318975 CLH_0500 tRNA CLH_0500 NC_010723.1 501409 501495 D tRNA-Tyr 501409..501495 Clostridium botulinum E3 str. Alaska E43 6319631 CLH_0501 tRNA CLH_0501 NC_010723.1 501500 501577 D tRNA-Val 501500..501577 Clostridium botulinum E3 str. Alaska E43 6319210 CLH_0502 tRNA CLH_0502 NC_010723.1 501597 501671 D tRNA-Thr 501597..501671 Clostridium botulinum E3 str. Alaska E43 6320408 CLH_0503 tRNA CLH_0503 NC_010723.1 501680 501764 D tRNA-Tyr 501680..501764 Clostridium botulinum E3 str. Alaska E43 6318370 CLH_0504 tRNA CLH_0504 NC_010723.1 501771 501848 D tRNA-Val 501771..501848 Clostridium botulinum E3 str. Alaska E43 6318604 CLH_0505 tRNA CLH_0505 NC_010723.1 501869 501943 D tRNA-Thr 501869..501943 Clostridium botulinum E3 str. Alaska E43 6317399 CLH_0506 tRNA CLH_0506 NC_010723.1 501950 502034 D tRNA-Tyr 501950..502034 Clostridium botulinum E3 str. Alaska E43 6317442 CLH_0527 tRNA CLH_0527 NC_010723.1 525393 525467 D tRNA-Trp 525393..525467 Clostridium botulinum E3 str. Alaska E43 6320428 CLH_0529 tRNA CLH_0529 NC_010723.1 525891 525967 D tRNA-Trp 525891..525967 Clostridium botulinum E3 str. Alaska E43 6317691 CLH_1017 tRNA CLH_1017 NC_010723.1 1068223 1068300 R tRNA-Met complement(1068223..1068300) Clostridium botulinum E3 str. Alaska E43 6320387 CLH_1553 tRNA CLH_1553 NC_010723.1 1664559 1664637 D tRNA-Arg 1664559..1664637 Clostridium botulinum E3 str. Alaska E43 6319371 CLH_1554 tRNA CLH_1554 NC_010723.1 1664639 1664716 D tRNA-Lys 1664639..1664716 Clostridium botulinum E3 str. Alaska E43 6320133 CLH_1556 tRNA CLH_1556 NC_010723.1 1666225 1666303 D tRNA-Arg 1666225..1666303 Clostridium botulinum E3 str. Alaska E43 6319478 CLH_1557 tRNA CLH_1557 NC_010723.1 1666305 1666382 D tRNA-Lys 1666305..1666382 Clostridium botulinum E3 str. Alaska E43 6320609 CLH_1834 tRNA CLH_1834 NC_010723.1 1964068 1964142 D tRNA-Cys 1964068..1964142 Clostridium botulinum E3 str. Alaska E43 6318049 CLH_2524 tRNA CLH_2524 NC_010723.1 2678866 2678954 D tRNA-Leu 2678866..2678954 Clostridium botulinum E3 str. Alaska E43 6317795 CLH_2689 tRNA CLH_2689 NC_010723.1 2843695 2843769 D tRNA-Glu 2843695..2843769 Clostridium botulinum E3 str. Alaska E43 6319020 CLH_3129 tRNA CLH_3129 NC_010723.1 3376425 3376502 R tRNA-Phe complement(3376425..3376502) Clostridium botulinum E3 str. Alaska E43 6318916 CLH_3156 tRNA CLH_3156 NC_010723.1 3402912 3402989 R tRNA-Ala complement(3402912..3402989) Clostridium botulinum E3 str. Alaska E43 6319561 CLH_3157 tRNA CLH_3157 NC_010723.1 3402994 3403070 R tRNA-Met complement(3402994..3403070) Clostridium botulinum E3 str. Alaska E43 6320494 CLH_3230 tRNA CLH_3230 NC_010723.1 3492331 3492424 R tRNA-Ser complement(3492331..3492424) Clostridium botulinum E3 str. Alaska E43 6319720 CLH_3254 tRNA CLH_3254 NC_010723.1 3515098 3515172 R tRNA-Arg complement(3515098..3515172) Clostridium botulinum E3 str. Alaska E43 6320516 CLH_3301 tRNA CLH_3301 NC_010723.1 3572691 3572768 R tRNA-Lys complement(3572691..3572768) Clostridium botulinum E3 str. Alaska E43 6320546 CLH_3306 tRNA CLH_3306 NC_010723.1 3576364 3576441 R tRNA-Lys complement(3576364..3576441) Clostridium botulinum E3 str. Alaska E43 6318488 CLH_3355 tRNA CLH_3355 NC_010723.1 3627831 3627909 R tRNA-Asp complement(3627831..3627909) Clostridium botulinum E3 str. Alaska E43 6318947 CLH_3356 tRNA CLH_3356 NC_010723.1 3627928 3628005 R tRNA-Val complement(3627928..3628005) Clostridium botulinum E3 str. Alaska E43 6319211 CLH_3357 tRNA CLH_3357 NC_010723.1 3628017 3628093 R tRNA-Glu complement(3628017..3628093) Clostridium botulinum E3 str. Alaska E43 6318499 CLH_3358 tRNA CLH_3358 NC_010723.1 3628124 3628200 R tRNA-Thr complement(3628124..3628200) Clostridium botulinum E3 str. Alaska E43 6319225 CLH_3359 tRNA CLH_3359 NC_010723.1 3628208 3628286 R tRNA-Asp complement(3628208..3628286) Clostridium botulinum E3 str. Alaska E43 6318501 CLH_3360 tRNA CLH_3360 NC_010723.1 3628291 3628368 R tRNA-Val complement(3628291..3628368) Clostridium botulinum E3 str. Alaska E43 6319312 CLH_3361 tRNA CLH_3361 NC_010723.1 3628380 3628456 R tRNA-Glu complement(3628380..3628456) Clostridium botulinum E3 str. Alaska E43 6317443 CLH_3362 tRNA CLH_3362 NC_010723.1 3628486 3628562 R tRNA-Thr complement(3628486..3628562) Clostridium botulinum E3 str. Alaska E43 6318116 CLH_3363 tRNA CLH_3363 NC_010723.1 3628570 3628648 R tRNA-Asp complement(3628570..3628648) Clostridium botulinum E3 str. Alaska E43 6318605 CLH_3364 tRNA CLH_3364 NC_010723.1 3628653 3628730 R tRNA-Val complement(3628653..3628730) Clostridium botulinum E3 str. Alaska E43 6318454 CLH_3365 tRNA CLH_3365 NC_010723.1 3628743 3628817 R tRNA-Glu complement(3628743..3628817) Clostridium botulinum E3 str. Alaska E43 6317527 CLH_0008 rRNA rrsI NC_010723.1 9569 11075 D 16S ribosomal RNA 9569..11075 Clostridium botulinum E3 str. Alaska E43 6318394 CLH_0010 rRNA rrlI NC_010723.1 11304 14213 D 23S ribosomal RNA 11304..14213 Clostridium botulinum E3 str. Alaska E43 6318381 CLH_0011 rRNA rrfI NC_010723.1 14273 14389 D 5S ribosomal RNA 14273..14389 Clostridium botulinum E3 str. Alaska E43 6317878 CLH_0183 rRNA rrsJ NC_010723.1 202407 203913 D 16S ribosomal RNA 202407..203913 Clostridium botulinum E3 str. Alaska E43 6317361 CLH_0187 rRNA rrlJ NC_010723.1 204301 207210 D 23S ribosomal RNA 204301..207210 Clostridium botulinum E3 str. Alaska E43 6317949 CLH_0188 rRNA rrfJ NC_010723.1 207269 207385 D 5S ribosomal RNA 207269..207385 Clostridium botulinum E3 str. Alaska E43 6318944 CLH_0430 rRNA rrsK NC_010723.1 429377 430883 D 16S ribosomal RNA 429377..430883 Clostridium botulinum E3 str. Alaska E43 6318135 CLH_0433 rRNA rrlK NC_010723.1 431262 434171 D 23S ribosomal RNA 431262..434171 Clostridium botulinum E3 str. Alaska E43 6320321 CLH_3130 rRNA rrfM NC_010723.1 3376508 3376624 R 5S ribosomal RNA complement(3376508..3376624) Clostridium botulinum E3 str. Alaska E43 6320043 CLH_3158 rRNA rrfA NC_010723.1 3403079 3403195 R 5S ribosomal RNA complement(3403079..3403195) Clostridium botulinum E3 str. Alaska E43 6317565 CLH_3159 rRNA rrlA NC_010723.1 3403253 3406162 R 23S ribosomal RNA complement(3403253..3406162) Clostridium botulinum E3 str. Alaska E43 6318528 CLH_3161 rRNA rrsA NC_010723.1 3406391 3407897 R 16S ribosomal RNA complement(3406391..3407897) Clostridium botulinum E3 str. Alaska E43 6318525 CLH_3169 rRNA rrfB NC_010723.1 3419946 3420062 R 5S ribosomal RNA complement(3419946..3420062) Clostridium botulinum E3 str. Alaska E43 6320065 CLH_3170 rRNA rrlB NC_010723.1 3420120 3423030 R 23S ribosomal RNA complement(3420120..3423030) Clostridium botulinum E3 str. Alaska E43 6318436 CLH_3172 rRNA rrsB NC_010723.1 3423259 3424765 R 16S ribosomal RNA complement(3423259..3424765) Clostridium botulinum E3 str. Alaska E43 6318822 CLH_3275 rRNA rrfC NC_010723.1 3538332 3538448 R 5S ribosomal RNA complement(3538332..3538448) Clostridium botulinum E3 str. Alaska E43 6317401 CLH_3276 rRNA rrlC NC_010723.1 3538506 3541415 R 23S ribosomal RNA complement(3538506..3541415) Clostridium botulinum E3 str. Alaska E43 6318526 CLH_3278 rRNA rrsC NC_010723.1 3541644 3543150 R 16S ribosomal RNA complement(3541644..3543150) Clostridium botulinum E3 str. Alaska E43 6318435 CLH_3279 rRNA rrfD NC_010723.1 3544225 3544341 R 5S ribosomal RNA complement(3544225..3544341) Clostridium botulinum E3 str. Alaska E43 6320539 CLH_3280 rRNA rrlD NC_010723.1 3544399 3547308 R 23S ribosomal RNA complement(3544399..3547308) Clostridium botulinum E3 str. Alaska E43 6318678 CLH_3282 rRNA rrsD NC_010723.1 3547537 3549043 R 16S ribosomal RNA complement(3547537..3549043) Clostridium botulinum E3 str. Alaska E43 6318976 CLH_3285 rRNA rrfE NC_010723.1 3550947 3551063 R 5S ribosomal RNA complement(3550947..3551063) Clostridium botulinum E3 str. Alaska E43 6318530 CLH_3286 rRNA rrlE NC_010723.1 3551121 3554030 R 23S ribosomal RNA complement(3551121..3554030) Clostridium botulinum E3 str. Alaska E43 6320084 CLH_3288 rRNA rrsE NC_010723.1 3554259 3555765 R 16S ribosomal RNA complement(3554259..3555765) Clostridium botulinum E3 str. Alaska E43 6318674 CLH_3289 rRNA rrfF NC_010723.1 3556840 3556956 R 5S ribosomal RNA complement(3556840..3556956) Clostridium botulinum E3 str. Alaska E43 6317853 CLH_3290 rRNA rrlF NC_010723.1 3557014 3559923 R 23S ribosomal RNA complement(3557014..3559923) Clostridium botulinum E3 str. Alaska E43 6318527 CLH_3292 rRNA rrsF NC_010723.1 3560152 3561658 R 16S ribosomal RNA complement(3560152..3561658) Clostridium botulinum E3 str. Alaska E43 6320138 CLH_3293 rRNA rrfG NC_010723.1 3562792 3562908 R 5S ribosomal RNA complement(3562792..3562908) Clostridium botulinum E3 str. Alaska E43 6318677 CLH_3294 rRNA rrlG NC_010723.1 3562966 3565875 R 23S ribosomal RNA complement(3562966..3565875) Clostridium botulinum E3 str. Alaska E43 6317887 CLH_3296 rRNA rrsG NC_010723.1 3566104 3567610 R 16S ribosomal RNA complement(3566104..3567610) Clostridium botulinum E3 str. Alaska E43 6318864 CLH_3302 rRNA rrfN NC_010723.1 3572774 3572890 R 5S ribosomal RNA complement(3572774..3572890) Clostridium botulinum E3 str. Alaska E43 6320322 CLH_3307 rRNA rrfH NC_010723.1 3576447 3576563 R 5S ribosomal RNA complement(3576447..3576563) Clostridium botulinum E3 str. Alaska E43 6317699 CLH_3308 rRNA rrlH NC_010723.1 3576691 3579600 R 23S ribosomal RNA complement(3576691..3579600) Clostridium botulinum E3 str. Alaska E43 6319049 CLH_3310 rRNA rrsH NC_010723.1 3579829 3581335 R 16S ribosomal RNA complement(3579829..3581335) Clostridium botulinum E3 str. Alaska E43 6320540