-- dump date   	20140619_043629
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001389370.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001389371.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001389372.1	identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988
YP_001389373.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001389375.1	negatively supercoils closed circular double-stranded DNA
YP_001389376.1	negatively supercoils closed circular double-stranded DNA
YP_001389377.1	identified by Glimmer3
YP_001389379.1	identified by match to protein family HMM PF02829; match to protein family HMM PF08279
YP_001389380.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04015
YP_001389381.1	identified by match to protein family HMM PF03699
YP_001389382.1	identified by match to protein family HMM PF03734
YP_001389383.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001389384.1	identified by match to protein family HMM PF07892
YP_001389385.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001389386.1	identified by Glimmer3
YP_001389387.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001389388.1	identified by match to protein family HMM PF03109
YP_001389390.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001389391.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_001389392.1	identified by match to protein family HMM PF00383
YP_001389393.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001389394.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_001389395.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001389397.1	identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862
YP_001389398.1	Regulatory factor involved in maltose metabolism
YP_001389399.1	identified by match to protein family HMM PF00293
YP_001389401.1	identified by match to protein family HMM PF00037
YP_001389403.1	identified by match to protein family HMM PF00899
YP_001389404.1	identified by match to protein family HMM PF07690
YP_001389405.1	identified by match to protein family HMM PF00583
YP_001389406.1	identified by match to protein family HMM PF03167
YP_001389407.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001389411.1	identified by match to protein family HMM PF00639
YP_001389412.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001389413.1	identified by match to protein family HMM PF02016
YP_001389414.1	identified by match to protein family HMM PF01544
YP_001389418.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_001389419.1	identified by match to protein family HMM PF02223
YP_001389420.1	identified by match to protein family HMM PF06153
YP_001389421.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001389422.1	identified by match to protein family HMM PF04468
YP_001389424.1	identified by match to protein family HMM PF00037
YP_001389426.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_001389427.1	identified by match to protein family HMM PF00877
YP_001389428.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_001389429.1	identified by match to protein family HMM PF08876
YP_001389430.1	identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078
YP_001389431.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001389432.1	identified by Glimmer3
YP_001389433.1	identified by match to protein family HMM PF01522
YP_001389435.1	identified by match to protein family HMM PF07670
YP_001389436.1	identified by match to protein family HMM PF07670
YP_001389437.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001389438.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_001389439.1	identified by match to protein family HMM PF01047
YP_001389440.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001389441.1	identified by match to protein family HMM PF04286
YP_001389442.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_001389443.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501
YP_001389444.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_001389445.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001389449.1	identified by match to protein family HMM TIGR01730
YP_001389450.1	identified by match to protein family HMM PF00005
YP_001389451.1	identified by match to protein family HMM PF02687
YP_001389453.1	identified by match to protein family HMM PF00037
YP_001389454.1	identified by Glimmer3
YP_001389455.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001389456.1	identified by match to protein family HMM PF02308
YP_001389457.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001389458.1	identified by match to protein family HMM TIGR02491
YP_001389460.1	identified by match to protein family HMM PF03551
YP_001389462.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001389463.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001389465.1	identified by match to protein family HMM PF00483
YP_001389466.1	identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299
YP_001389467.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268
YP_001389469.1	identified by match to protein family HMM PF04055
YP_001389470.1	identified by match to protein family HMM PF01547
YP_001389471.1	identified by match to protein family HMM PF00534
YP_001389472.1	identified by match to protein family HMM TIGR02906
YP_001389473.1	identified by Glimmer3
YP_001389475.1	identified by match to protein family HMM TIGR02906
YP_001389476.1	identified by match to protein family HMM PF00534
YP_001389477.1	identified by match to protein family HMM TIGR02906
YP_001389478.1	identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855
YP_001389479.1	identified by match to protein family HMM PF06257
YP_001389480.1	identified by match to protein family HMM PF01476
YP_001389481.1	identified by Glimmer3
YP_001389482.1	identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069
YP_001389483.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001389484.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001389485.1	identified by Glimmer3
YP_001389486.1	identified by match to protein family HMM PF03323
YP_001389487.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001389488.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001389489.1	identified by match to protein family HMM TIGR02837
YP_001389490.1	identified by match to protein family HMM PF04101; match to protein family HMM PF06925
YP_001389491.1	identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889
YP_001389492.1	identified by match to protein family HMM PF02568
YP_001389493.1	identified by match to protein family HMM PF09148
YP_001389495.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001389497.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001389498.1	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105
YP_001389499.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_001389500.1	identified by match to protein family HMM PF07136
YP_001389501.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387
YP_001389502.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001389504.1	identified by match to protein family HMM PF02535
YP_001389505.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_001389506.1	identified by match to protein family HMM PF01451
YP_001389507.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_001389508.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001389509.1	identified by match to protein family HMM PF00383
YP_001389510.1	identified by match to protein family HMM PF00953
YP_001389511.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_001389513.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001389514.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001389515.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_001389516.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001389517.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001389518.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001389519.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001389520.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001389522.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001389523.1	identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870
YP_001389524.1	identified by match to protein family HMM PF01551
YP_001389525.1	identified by match to protein family HMM TIGR02844
YP_001389526.1	identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_001389527.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_001389528.1	identified by match to protein family HMM PF01171
YP_001389529.1	identified by Glimmer3
YP_001389530.1	identified by Glimmer3
YP_001389531.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001389532.1	identified by match to protein family HMM TIGR01448
YP_001389534.1	identified by match to protein family HMM PF00156
YP_001389535.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_001389536.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001389537.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_001389538.1	identified by match to protein family HMM PF04389
YP_001389539.1	identified by match to protein family HMM PF00575
YP_001389543.1	identified by match to protein family HMM PF00149
YP_001389544.1	identified by match to protein family HMM PF01022
YP_001389545.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_001389547.1	identified by match to protein family HMM PF04607
YP_001389548.1	identified by Glimmer3
YP_001389549.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001389550.1	identified by match to protein family HMM PF00581
YP_001389552.1	identified by match to protein family HMM PF00226; match to protein family HMM PF07719
YP_001389554.1	identified by match to protein family HMM PF01928
YP_001389556.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859
YP_001389558.1	identified by match to protein family HMM PF04239
YP_001389559.1	identified by match to protein family HMM PF00485
YP_001389560.1	identified by Glimmer3
YP_001389561.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_001389562.1	identified by match to protein family HMM PF00571
YP_001389563.1	similar to YegS from E. coli
YP_001389565.1	identified by match to protein family HMM PF04055; match to protein family HMM PF08497
YP_001389566.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239
YP_001389567.1	identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869
YP_001389568.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_001389569.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_001389570.1	identified by match to protein family HMM PF08331
YP_001389571.1	identified by match to protein family HMM PF01553
YP_001389572.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_001389573.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_001389574.1	identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_001389576.1	identified by match to protein family HMM PF05343
YP_001389577.1	identified by match to protein family HMM PF04294
YP_001389578.1	identified by match to protein family HMM PF04294; match to protein family HMM PF07501
YP_001389579.1	identified by match to protein family HMM PF04055
YP_001389580.1	identified by match to protein family HMM PF00588
YP_001389581.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001389582.1	identified by match to protein family HMM PF02608
YP_001389583.1	identified by match to protein family HMM PF00005
YP_001389584.1	identified by match to protein family HMM PF02653
YP_001389585.1	identified by match to protein family HMM PF02653
YP_001389586.1	identified by match to protein family HMM PF01522
YP_001389587.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001389588.1	identified by match to protein family HMM PF04198
YP_001389589.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001389590.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001389591.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001389592.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001389593.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001389594.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_001389595.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_001389596.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001389597.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001389598.1	identified by match to protein family HMM PF00375
YP_001389599.1	identified by match to protein family HMM PF08877
YP_001389600.1	identified by Glimmer3
YP_001389601.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_001389602.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001389603.1	identified by match to protein family HMM PF00027
YP_001389604.1	identified by match to protein family HMM PF00282
YP_001389605.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001389606.1	identified by match to protein family HMM PF01569
YP_001389607.1	identified by match to protein family HMM PF07883
YP_001389608.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389609.1	identified by match to protein family HMM PF02518
YP_001389610.1	identified by match to protein family HMM PF00005
YP_001389611.1	identified by match to protein family HMM PF02687
YP_001389612.1	identified by similarity to GB:AAZ72381.1
YP_001389613.1	identified by match to protein family HMM PF07731
YP_001389615.1	identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949
YP_001389616.1	transports degraded pectin products into the bacterial cell
YP_001389617.1	identified by match to protein family HMM PF02518
YP_001389618.1	identified by match to protein family HMM PF00072
YP_001389619.1	identified by match to protein family HMM PF00324
YP_001389620.1	identified by match to protein family HMM PF00753
YP_001389621.1	identified by similarity to GB:AAF63432.1; match to protein family HMM PF00132
YP_001389622.1	identified by match to protein family HMM PF00583
YP_001389623.1	identified by match to protein family HMM PF00383
YP_001389624.1	identified by match to protein family HMM PF00583
YP_001389625.1	identified by match to protein family HMM PF01872
YP_001389626.1	3'-5' exonuclease of DNA polymerase III
YP_001389627.1	identified by match to protein family HMM PF00857
YP_001389628.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_001389629.1	identified by match to protein family HMM PF00941
YP_001389630.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001389631.1	identified by Glimmer3
YP_001389632.1	identified by match to protein family HMM PF02683
YP_001389633.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001389634.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389635.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389636.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_001389637.1	identified by match to protein family HMM PF02056
YP_001389638.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_001389639.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001389640.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001389641.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001389642.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389643.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001389644.1	identified by match to protein family HMM PF00005
YP_001389645.1	identified by match to protein family HMM PF02687
YP_001389646.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_001389647.1	identified by match to protein family HMM PF02056
YP_001389648.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001389649.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001389651.1	identified by match to protein family HMM PF00313
YP_001389652.1	identified by match to protein family HMM PF06210
YP_001389653.1	identified by match to protein family HMM PF02082
YP_001389654.1	identified by match to protein family HMM PF01323
YP_001389655.1	identified by match to protein family HMM PF01073
YP_001389656.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001389657.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_001389658.1	identified by match to protein family HMM PF02056
YP_001389659.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001389660.1	identified by match to protein family HMM PF00920
YP_001389661.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_001389662.1	identified by match to protein family HMM PF00294
YP_001389663.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178
YP_001389664.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389665.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389666.1	identified by match to protein family HMM PF00535
YP_001389667.1	identified by match to protein family HMM PF04138
YP_001389668.1	identified by match to protein family HMM PF02366
YP_001389669.1	identified by match to protein family HMM PF00165
YP_001389670.1	identified by match to protein family HMM PF01497
YP_001389671.1	identified by match to protein family HMM PF01032
YP_001389672.1	identified by match to protein family HMM PF00005
YP_001389673.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001389674.1	identified by match to protein family HMM PF00165
YP_001389675.1	identified by similarity to SP:P37580; match to protein family HMM PF01497
YP_001389676.1	identified by match to protein family HMM PF01497
YP_001389677.1	identified by match to protein family HMM PF01032
YP_001389678.1	identified by match to protein family HMM PF01032
YP_001389679.1	identified by match to protein family HMM PF00005
YP_001389680.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001389682.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001389683.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001389684.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389685.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001389686.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell
YP_001389687.1	identified by match to protein family HMM PF00005
YP_001389688.1	identified by match to protein family HMM PF02687
YP_001389689.1	identified by Glimmer3
YP_001389690.1	identified by similarity to GB:AAY60422.1; match to protein family HMM PF01934
YP_001389691.1	identified by match to protein family HMM PF03788
YP_001389692.1	identified by match to protein family HMM PF04172
YP_001389694.1	identified by match to protein family HMM PF04055
YP_001389695.1	identified by match to protein family HMM PF08903
YP_001389698.1	identified by match to protein family HMM PF04647
YP_001389700.1	identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254
YP_001389701.1	identified by match to protein family HMM PF00583
YP_001389703.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001389705.1	identified by match to protein family HMM PF04647
YP_001389706.1	identified by Glimmer3
YP_001389707.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001389708.1	identified by match to protein family HMM PF01171
YP_001389709.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001389710.1	identified by match to protein family HMM PF00324
YP_001389711.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001389712.1	identified by match to protein family HMM PF00171; match to protein family HMM PF00465
YP_001389715.1	identified by Glimmer3
YP_001389718.1	identified by match to protein family HMM PF01569
YP_001389719.1	identified by match to protein family HMM PF01522
YP_001389720.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389721.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389723.1	identified by match to protein family HMM PF06962
YP_001389724.1	identified by match to protein family HMM PF09335
YP_001389725.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254
YP_001389727.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001389728.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001389729.1	identified by match to protein family HMM PF00999
YP_001389730.1	identified by match to protein family HMM PF00266
YP_001389731.1	identified by match to protein family HMM PF03601
YP_001389733.1	identified by match to protein family HMM PF00486
YP_001389734.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389735.1	identified by match to protein family HMM PF00474
YP_001389736.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945
YP_001389737.1	identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946
YP_001389738.1	identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947
YP_001389739.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001389740.1	identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943
YP_001389741.1	involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate
YP_001389742.1	identified by match to protein family HMM PF04122
YP_001389743.1	identified by match to protein family HMM PF07456
YP_001389744.1	identified by match to protein family HMM PF07009
YP_001389745.1	identified by match to protein family HMM PF02424
YP_001389746.1	identified by match to protein family HMM PF04122
YP_001389747.1	identified by match to protein family HMM PF04122; match to protein family HMM PF04151
YP_001389749.1	identified by Glimmer3
YP_001389750.1	identified by match to protein family HMM PF04122
YP_001389751.1	identified by Glimmer3
YP_001389752.1	identified by match to protein family HMM PF04122
YP_001389756.1	identified by match to protein family HMM PF00528
YP_001389757.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_001389758.1	identified by match to protein family HMM PF00005
YP_001389760.1	identified by match to protein family HMM PF00324
YP_001389761.1	identified by match to protein family HMM TIGR02898
YP_001389763.1	identified by match to protein family HMM PF01863
YP_001389764.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_001389766.1	identified by match to protein family HMM PF01475
YP_001389767.1	identified by similarity to GB:AAK78928.1
YP_001389768.1	identified by match to protein family HMM PF01966
YP_001389769.1	identified by match to protein family HMM PF01694
YP_001389770.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001389771.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001389772.1	identified by match to protein family HMM PF06803
YP_001389773.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_001389774.1	identified by Glimmer3
YP_001389775.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01381
YP_001389776.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001389777.1	identified by Glimmer3
YP_001389778.1	identified by match to protein family HMM PF01965
YP_001389780.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346
YP_001389781.1	identified by match to protein family HMM PF07685
YP_001389782.1	identified by match to protein family HMM PF08245; match to protein family HMM PF08353
YP_001389783.1	identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_001389785.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell
YP_001389786.1	identified by match to protein family HMM PF00753
YP_001389787.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_001389788.1	identified by match to protein family HMM PF00682
YP_001389789.1	Catalyzes the conversion of citrate to isocitrate
YP_001389790.1	identified by match to protein family HMM PF00180
YP_001389791.1	identified by match to protein family HMM PF00005
YP_001389792.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03606
YP_001389793.1	identified by match to protein family HMM PF04070
YP_001389794.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001389795.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001389796.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001389797.1	identified by match to protein family HMM TIGR02773
YP_001389798.1	identified by Glimmer3
YP_001389799.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001389801.1	identified by match to protein family HMM PF00440
YP_001389802.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073
YP_001389803.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001389804.1	identified by match to protein family HMM PF01155
YP_001389806.1	identified by Glimmer3
YP_001389807.1	identified by similarity to GB:AAK78733.1
YP_001389808.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785
YP_001389809.1	identified by match to protein family HMM PF00015
YP_001389810.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_001389811.1	identified by match to protein family HMM PF01734
YP_001389812.1	identified by match to protein family HMM PF00753
YP_001389813.1	identified by match to protein family HMM PF00903
YP_001389814.1	identified by Glimmer3
YP_001389815.1	identified by match to protein family HMM PF04122
YP_001389816.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001389817.1	identified by match to protein family HMM PF00497
YP_001389818.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001389819.1	identified by match to protein family HMM PF00563; match to protein family HMM PF08668
YP_001389820.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_001389821.1	identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694
YP_001389822.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001389823.1	identified by Glimmer3
YP_001389824.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001389825.1	identified by match to protein family HMM PF01094
YP_001389826.1	identified by match to protein family HMM PF02653
YP_001389827.1	identified by match to protein family HMM PF02653
YP_001389828.1	identified by match to protein family HMM PF00005
YP_001389829.1	identified by match to protein family HMM PF00005
YP_001389830.1	identified by match to protein family HMM PF02596
YP_001389831.1	identified by match to protein family HMM PF06738
YP_001389833.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001389834.1	identified by match to protein family HMM PF04011
YP_001389835.1	identified by match to protein family HMM PF04536
YP_001389836.1	identified by match to protein family HMM PF00293
YP_001389837.1	identified by Glimmer3
YP_001389839.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001389842.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_001389844.1	identified by match to protein family HMM PF00293
YP_001389845.1	identified by match to protein family HMM PF02588
YP_001389846.1	identified by match to protein family HMM PF01022
YP_001389847.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_001389848.1	identified by match to protein family HMM PF02562
YP_001389851.1	identified by Glimmer3
YP_001389854.1	identified by match to protein family HMM PF02624
YP_001389855.1	identified by match to protein family HMM PF02517
YP_001389857.1	identified by match to protein family HMM PF00005
YP_001389858.1	identified by match to protein family HMM PF01061
YP_001389859.1	identified by match to protein family HMM PF01061
YP_001389860.1	identified by match to protein family HMM PF02163
YP_001389861.1	identified by Glimmer3
YP_001389862.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_001389864.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001389866.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_001389867.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001389868.1	identified by match to protein family HMM PF00072
YP_001389869.1	identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_001389870.1	identified by match to protein family HMM PF00561
YP_001389871.1	identified by match to protein family HMM PF00072
YP_001389872.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001389873.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001389874.1	identified by match to protein family HMM PF00072
YP_001389875.1	identified by Glimmer3
YP_001389876.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414
YP_001389877.1	identified by match to protein family HMM PF06733
YP_001389879.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279
YP_001389880.1	identified by match to protein family HMM PF01262
YP_001389881.1	identified by match to protein family HMM PF06874
YP_001389882.1	identified by Glimmer3
YP_001389883.1	identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481
YP_001389884.1	identified by Glimmer3
YP_001389885.1	identified by Glimmer3
YP_001389886.1	identified by match to protein family HMM PF02777
YP_001389887.1	identified by match to protein family HMM PF00753
YP_001389890.1	identified by match to protein family HMM PF01037
YP_001389892.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_001389893.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_001389894.1	identified by match to protein family HMM PF00132
YP_001389895.1	identified by match to protein family HMM PF00753
YP_001389896.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517
YP_001389897.1	identified by match to protein family HMM PF02417
YP_001389898.1	identified by match to protein family HMM PF02417
YP_001389899.1	identified by match to protein family HMM PF02452
YP_001389900.1	identified by match to protein family HMM PF03885
YP_001389901.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001389902.1	identified by match to protein family HMM PF01957
YP_001389903.1	identified by match to protein family HMM PF01145
YP_001389905.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_001389907.1	identified by match to protein family HMM PF01381
YP_001389908.1	identified by Glimmer3
YP_001389909.1	identified by match to protein family HMM PF00583
YP_001389910.1	identified by match to protein family HMM PF04324
YP_001389911.1	identified by Glimmer3
YP_001389913.1	identified by Glimmer3
YP_001389914.1	identified by match to protein family HMM PF02554
YP_001389916.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001389917.1	identified by match to protein family HMM PF00005
YP_001389918.1	identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220
YP_001389919.1	identified by match to protein family HMM TIGR02357
YP_001389920.1	identified by Glimmer3
YP_001389921.1	identified by match to protein family HMM PF02810
YP_001389922.1	identified by match to protein family HMM PF00392
YP_001389923.1	identified by match to protein family HMM PF00005
YP_001389925.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_001389926.1	identified by match to protein family HMM PF00528
YP_001389927.1	identified by match to protein family HMM PF00528; match to protein family HMM PF01547
YP_001389928.1	identified by match to protein family HMM PF00165
YP_001389929.1	identified by match to protein family HMM PF00375
YP_001389930.1	identified by similarity to GB:AAK81349.1
YP_001389931.1	identified by Glimmer3
YP_001389932.1	identified by match to protein family HMM PF00583
YP_001389933.1	identified by match to protein family HMM PF02517
YP_001389934.1	identified by match to protein family HMM PF00805
YP_001389935.1	identified by Glimmer3
YP_001389936.1	identified by match to protein family HMM PF01381
YP_001389937.1	identified by Glimmer3
YP_001389938.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001389939.1	identified by Glimmer3
YP_001389940.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001389941.1	identified by Glimmer3
YP_001389942.1	identified by Glimmer3
YP_001389943.1	identified by Glimmer3
YP_001389944.1	identified by match to protein family HMM PF04055
YP_001389945.1	identified by Glimmer3
YP_001389947.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463
YP_001389949.1	identified by match to protein family HMM PF00583
YP_001389950.1	identified by match to protein family HMM PF02687
YP_001389951.1	identified by match to protein family HMM PF00005
YP_001389952.1	identified by match to protein family HMM PF00583
YP_001389954.1	identified by Glimmer3
YP_001389956.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001389958.1	identified by match to protein family HMM PF00884
YP_001389959.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001389960.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_001389961.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001389962.1	identified by match to protein family HMM PF03551
YP_001389964.1	identified by match to protein family HMM PF04397
YP_001389966.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001389967.1	identified by match to protein family HMM PF02517
YP_001389968.1	identified by match to protein family HMM PF01381
YP_001389971.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389972.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389973.1	identified by match to protein family HMM PF02557
YP_001389974.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389975.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001389977.1	identified by match to protein family HMM PF00072
YP_001389978.1	identified by match to protein family HMM PF02518
YP_001389979.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_001389980.1	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001389981.1	identified by Glimmer3
YP_001389982.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001389983.1	identified by match to protein family HMM PF00302
YP_001389984.1	identified by match to protein family HMM PF00440
YP_001389985.1	identified by match to protein family HMM PF00583
YP_001389986.1	identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222
YP_001389987.1	identified by match to protein family HMM PF00165
YP_001389988.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001389989.1	identified by match to protein family HMM TIGR00277
YP_001389990.1	identified by Glimmer3
YP_001389991.1	identified by match to protein family HMM PF00005
YP_001389992.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001389993.1	identified by match to protein family HMM PF00488
YP_001389995.1	identified by match to protein family HMM PF01243
YP_001389996.1	identified by match to protein family HMM PF04304
YP_001389999.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001390000.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001390001.1	identified by match to protein family HMM PF02915
YP_001390002.1	identified by match to protein family HMM PF01047
YP_001390003.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001390004.1	identified by Glimmer3
YP_001390005.1	identified by match to protein family HMM PF00005
YP_001390006.1	identified by match to protein family HMM PF01061
YP_001390007.1	identified by similarity to GB:AAK78726.1
YP_001390009.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001390010.1	identified by Glimmer3
YP_001390011.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001390012.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995
YP_001390013.1	identified by match to protein family HMM PF02811
YP_001390014.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001390015.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001390016.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04405
YP_001390017.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04282
YP_001390018.1	identified by match to protein family HMM PF03352
YP_001390022.1	identified by match to protein family HMM PF00753
YP_001390023.1	identified by match to protein family HMM PF02653
YP_001390024.1	identified by match to protein family HMM PF00005
YP_001390025.1	identified by match to protein family HMM PF04392
YP_001390026.1	identified by similarity to SP:P06555; match to protein family HMM PF03965
YP_001390027.1	identified by Glimmer3
YP_001390028.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001390029.1	identified by match to protein family HMM PF01207
YP_001390030.1	identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_001390032.1	identified by match to protein family HMM PF00165
YP_001390033.1	identified by Glimmer3
YP_001390034.1	identified by match to protein family HMM PF01497
YP_001390035.1	identified by match to protein family HMM PF01032
YP_001390036.1	identified by match to protein family HMM PF01032
YP_001390037.1	identified by match to protein family HMM PF00005
YP_001390038.1	identified by match to protein family HMM PF00142
YP_001390039.1	identified by Glimmer3
YP_001390040.1	identified by Glimmer3
YP_001390041.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001390043.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001390044.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001390045.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_001390046.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001390047.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001390048.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_001390049.1	identified by Glimmer3
YP_001390050.1	identified by similarity to GB:AAK81458.1
YP_001390051.1	identified by similarity to GB:AAK81458.1
YP_001390052.1	identified by similarity to GB:AAZ69210.1
YP_001390053.1	identified by Glimmer3
YP_001390054.1	identified by similarity to GB:ABF36171.1
YP_001390055.1	identified by match to protein family HMM PF00583
YP_001390056.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390057.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390058.1	identified by match to protein family HMM PF00005
YP_001390059.1	identified by match to protein family HMM PF02687
YP_001390060.1	identified by match to protein family HMM PF01047
YP_001390061.1	identified by match to protein family HMM PF03358
YP_001390062.1	identified by Glimmer3
YP_001390063.1	identified by Glimmer3
YP_001390064.1	identified by match to protein family HMM PF00376
YP_001390065.1	identified by similarity to SP:Q04945
YP_001390066.1	identified by Glimmer3
YP_001390067.1	similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001390068.1	identified by similarity to GB:CAG37045.1
YP_001390069.1	identified by match to protein family HMM PF00005
YP_001390070.1	identified by match to protein family HMM PF01061
YP_001390071.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_003204972.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001390072.1	identified by Glimmer3
YP_001390073.1	identified by match to protein family HMM PF00583
YP_001390074.1	identified by Glimmer3
YP_001390075.1	identified by Glimmer3
YP_001390076.1	identified by match to protein family HMM PF00165
YP_001390077.1	identified by match to protein family HMM PF04994
YP_001390078.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001390079.1	identified by match to protein family HMM PF00015
YP_001390081.1	identified by match to protein family HMM PF00005
YP_001390082.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001390083.1	identified by match to protein family HMM PF01965
YP_001390084.1	identified by Glimmer3
YP_001390085.1	identified by match to protein family HMM PF00291
YP_001390086.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_001390087.1	identified by match to protein family HMM PF01053; match to protein family HMM PF01212
YP_001390088.1	identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001390089.1	identified by Glimmer3
YP_001390090.1	identified by match to protein family HMM PF00704
YP_001390091.1	identified by match to protein family HMM PF00403
YP_001390093.1	identified by match to protein family HMM PF06172
YP_001390094.1	identified by Glimmer3
YP_001390095.1	identified by match to protein family HMM PF01381
YP_001390096.1	identified by match to protein family HMM PF01381
YP_001390097.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_001390098.1	identified by match to protein family HMM TIGR02937
YP_001390100.1	identified by Glimmer3
YP_001390102.1	identified by similarity to GB:CAJ67452.1
YP_001390103.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07485
YP_001390104.1	identified by similarity to SP:Q01257; match to protein family HMM PF01451
YP_001390105.1	identified by match to protein family HMM PF01022
YP_001390106.1	identified by match to protein family HMM PF06953
YP_001390107.1	identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345
YP_001390108.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_001390109.1	identified by Glimmer3
YP_001390110.1	identified by match to protein family HMM TIGR01909
YP_001390111.1	identified by match to protein family HMM PF01022
YP_001390112.1	Selenoprotein. identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001390113.1	identified by match to protein family HMM PF00300
YP_001390115.1	identified by Glimmer3
YP_001390118.1	identified by similarity to GB:AAR89497.1
YP_001390120.1	identified by similarity to PIR:S68219; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209
YP_001390121.1	identified by match to protein family HMM PF06597
YP_001390122.1	identified by similarity to GB:CAA67511.1; match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470
YP_001390123.1	identified by similarity to SP:P30996; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953
YP_001390124.1	identified by match to protein family HMM PF01183; match to protein family HMM PF01471
YP_001390126.1	identified by match to protein family HMM PF00303
YP_001390127.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001390129.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001390130.1	identified by Glimmer3
YP_001390131.1	identified by match to protein family HMM PF06695
YP_001390132.1	identified by match to protein family HMM PF00005
YP_001390134.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390135.1	identified by match to protein family HMM PF00005
YP_001390137.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001390138.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390141.1	identified by match to protein family HMM PF00005
YP_001390142.1	identified by match to protein family HMM PF02687
YP_001390143.1	identified by Glimmer3
YP_001390144.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390145.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390146.1	identified by match to protein family HMM PF06555
YP_001390147.1	identified by match to protein family HMM TIGR02861
YP_001390149.1	identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036
YP_001390150.1	identified by match to protein family HMM PF00581
YP_001390151.1	identified by Glimmer3
YP_001390152.1	identified by Glimmer3
YP_001390154.1	identified by Glimmer3
YP_001390155.1	identified by Glimmer3
YP_001390156.1	identified by Glimmer3
YP_001390157.1	identified by Glimmer3
YP_001390158.1	identified by match to protein family HMM PF00903
YP_001390159.1	identified by match to protein family HMM PF00144
YP_001390160.1	identified by match to protein family HMM PF01381
YP_001390163.1	identified by Glimmer3
YP_001390164.1	identified by match to protein family HMM PF01979
YP_001390165.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001390166.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001390167.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00496
YP_001390168.1	identified by match to protein family HMM PF04023
YP_001390169.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162
YP_001390170.1	identified by match to protein family HMM PF04294; match to protein family HMM PF07501
YP_001390171.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001390175.1	identified by match to protein family HMM PF07875
YP_001390177.1	identified by match to protein family HMM PF08821
YP_001390178.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_001390179.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_001390181.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_001390182.1	identified by match to protein family HMM PF00011
YP_001390183.1	identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001390184.1	identified by match to protein family HMM PF01041
YP_001390185.1	identified by match to protein family HMM PF01041
YP_001390186.1	identified by similarity to GB:ABL83831.1
YP_001390187.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954
YP_001390188.1	identified by Glimmer3
YP_001390190.1	identified by match to protein family HMM PF00561
YP_001390191.1	identified by match to protein family HMM PF03596
YP_001390192.1	identified by match to protein family HMM PF04463
YP_001390193.1	identified by Glimmer3
YP_001390194.1	identified by similarity to GB:AAK79434.1
YP_001390195.1	identified by match to protein family HMM PF01037
YP_001390198.1	identified by match to protein family HMM PF00005
YP_001390199.1	identified by match to protein family HMM PF01381
YP_001390200.1	identified by match to protein family HMM PF00583
YP_001390201.1	identified by match to protein family HMM PF00805
YP_001390202.1	identified by match to protein family HMM PF00376
YP_001390203.1	identified by match to protein family HMM PF00583
YP_001390204.1	identified by Glimmer3
YP_001390205.1	identified by match to protein family HMM PF04229
YP_001390206.1	identified by match to protein family HMM PF00583
YP_001390207.1	identified by match to protein family HMM PF02678
YP_001390208.1	identified by match to protein family HMM PF01638
YP_001390209.1	identified by match to protein family HMM PF00881
YP_001390211.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_001390212.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001390213.1	identified by match to protein family HMM PF04657
YP_001390214.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001390215.1	identified by similarity to GB:AAS42270.1
YP_001390218.1	identified by match to protein family HMM PF00027
YP_001390220.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001390223.1	identified by similarity to GB:CAJ68657.1
YP_001390224.1	identified by match to protein family HMM PF01327
YP_001390225.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001390226.1	identified by match to protein family HMM PF00165
YP_001390227.1	identified by match to protein family HMM PF00881
YP_001390228.1	identified by match to protein family HMM PF00037
YP_001390229.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001390230.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995
YP_001390231.1	identified by match to protein family HMM PF00232
YP_001390232.1	identified by Glimmer3
YP_001390233.1	identified by match to protein family HMM PF00953
YP_001390234.1	identified by match to protein family HMM PF01381
YP_001390235.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390236.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390237.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02463
YP_001390238.1	identified by match to protein family HMM PF02687
YP_001390239.1	identified by match to protein family HMM PF00440
YP_001390240.1	identified by match to protein family HMM PF04055
YP_001390241.1	identified by Glimmer3
YP_001390242.1	identified by match to protein family HMM PF00376
YP_001390243.1	identified by similarity to SP:P37449; match to protein family HMM PF00936
YP_001390244.1	identified by similarity to GB:AAU16411.1
YP_001390245.1	identified by match to protein family HMM PF02275; match to protein family HMM PF03417
YP_001390246.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001390247.1	identified by match to protein family HMM PF04371
YP_001390248.1	identified by match to protein family HMM PF00892; match to protein family HMM PF06800
YP_001390249.1	identified by match to protein family HMM PF04229
YP_001390250.1	identified by match to protein family HMM PF03734
YP_001390251.1	identified by Glimmer3
YP_001390252.1	identified by Glimmer3
YP_001390253.1	identified by Glimmer3
YP_001390255.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02687
YP_001390256.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390257.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001390258.1	identified by match to protein family HMM PF02632
YP_001390259.1	identified by Glimmer3
YP_001390260.1	identified by match to protein family HMM PF00583
YP_001390261.1	identified by match to protein family HMM PF00717
YP_001390262.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_001390263.1	identified by match to protein family HMM PF00376; match to protein family HMM PF07739
YP_001390264.1	identified by Glimmer3
YP_001390265.1	identified by Glimmer3
YP_001390266.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001390267.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001390268.1	identified by match to protein family HMM PF00155
YP_001390269.1	catalyzes the ATP-dependent transport of cobalt
YP_001390270.1	identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165
YP_001390272.1	catalyzes the formation of siroheme from precorrin-2
YP_001390273.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001390274.1	identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469
YP_001390276.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001390277.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001390279.1	identified by match to protein family HMM PF00132
YP_001390280.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_001390281.1	identified by similarity to GB:BAE82864.1
YP_001390282.1	identified by match to protein family HMM PF00376
YP_001390283.1	identified by similarity to GB:AAK81102.1
YP_001390284.1	identified by match to protein family HMM PF00583
YP_001390285.1	identified by Glimmer3
YP_001390286.1	identified by match to protein family HMM PF00881
YP_001390287.1	identified by Glimmer3
YP_001390288.1	identified by match to protein family HMM PF04229
YP_001390289.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001390290.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467
YP_001390291.1	identified by similarity to GB:ABK62228.1
YP_001390292.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR02469
YP_001390295.1	identified by Glimmer3
YP_001390296.1	identified by Glimmer3
YP_001390299.1	identified by match to protein family HMM PF00583
YP_001390300.1	identified by Glimmer3
YP_001390301.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_001390302.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_001390303.1	identified by match to protein family HMM PF01890
YP_001390304.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466
YP_001390305.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001390307.1	identified by Glimmer3
YP_001390308.1	identified by match to protein family HMM PF01903; match to protein family HMM PF06180
YP_001390309.1	identified by match to protein family HMM PF00288
YP_001390310.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001390311.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001390312.1	identified by match to protein family HMM PF01226
YP_001390313.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910
YP_001390314.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_001390315.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912
YP_001390316.1	identified by match to protein family HMM PF00994
YP_001390317.1	identified by Glimmer3
YP_001390319.1	identified by match to protein family HMM PF00005
YP_001390321.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390322.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390323.1	identified by Glimmer3
YP_001390324.1	identified by match to protein family HMM PF00005
YP_001390325.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_001390326.1	identified by match to protein family HMM PF01497
YP_001390327.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_001390328.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001390329.1	identified by match to protein family HMM PF00165
YP_001390330.1	identified by match to protein family HMM PF00583
YP_001390331.1	identified by match to protein family HMM PF00583
YP_001390332.1	identified by match to protein family HMM PF07081
YP_001390333.1	identified by Glimmer3
YP_001390334.1	identified by match to protein family HMM PF00248
YP_001390335.1	identified by match to protein family HMM PF04993
YP_001390336.1	identified by match to protein family HMM PF00583
YP_001390338.1	catalyzes the formation of inosine from adenosine
YP_001390339.1	identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001390340.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001390343.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_001390344.1	identified by match to protein family HMM PF02915
YP_001390345.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001390346.1	identified by match to protein family HMM PF00072
YP_001390347.1	identified by match to protein family HMM PF07656
YP_001390348.1	identified by Glimmer3
YP_001390350.1	identified by match to protein family HMM PF04055
YP_001390351.1	identified by match to protein family HMM PF00004
YP_001390352.1	identified by Glimmer3
YP_001390353.1	identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795
YP_001390355.1	identified by match to protein family HMM PF01012
YP_001390356.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001390357.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001390358.1	identified by similarity to GB:CAK20204.1
YP_001390360.1	identified by match to protein family HMM PF01047
YP_001390361.1	identified by match to protein family HMM PF04199
YP_001390362.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001390363.1	identified by match to protein family HMM PF04199
YP_001390364.1	identified by match to protein family HMM PF01047
YP_001390365.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_001390366.1	identified by match to protein family HMM PF03483
YP_001390367.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001390368.1	identified by match to protein family HMM PF06695
YP_001390369.1	identified by Glimmer3
YP_001390371.1	identified by match to protein family HMM PF01066
YP_001390372.1	identified by match to protein family HMM PF00440
YP_001390374.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_001390375.1	identified by match to protein family HMM PF00027
YP_001390376.1	identified by match to protein family HMM PF01965
YP_001390377.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001390378.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001390379.1	identified by similarity to GB:ABM29253.1
YP_001390381.1	identified by match to protein family HMM PF04023
YP_001390382.1	identified by similarity to GB:ABG83432.1; match to protein family HMM PF04023
YP_001390383.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437
YP_001390384.1	identified by Glimmer3
YP_001390385.1	identified by similarity to GB:ABB15008.1; match to protein family HMM PF04239
YP_001390386.1	identified by match to protein family HMM PF00583
YP_001390387.1	identified by match to protein family HMM PF02557
YP_001390388.1	identified by match to protein family HMM TIGR03090
YP_001390389.1	identified by Glimmer3
YP_001390390.1	identified by match to protein family HMM PF00440
YP_001390391.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001390392.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390393.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001390394.1	identified by Glimmer3
YP_001390395.1	identified by match to protein family HMM PF00067
YP_001390396.1	identified by match to protein family HMM PF00403
YP_001390397.1	identified by Glimmer3
YP_001390399.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390400.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001390402.1	identified by match to protein family HMM PF00165
YP_001390403.1	identified by match to protein family HMM PF01032
YP_001390404.1	identified by match to protein family HMM PF01032
YP_001390405.1	identified by match to protein family HMM PF00005
YP_001390406.1	identified by match to protein family HMM PF01497
YP_001390407.1	identified by match to protein family HMM PF00165
YP_001390408.1	identified by Glimmer3
YP_001390409.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001390410.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463
YP_001390412.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001390414.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_001390415.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839
YP_001390416.1	identified by match to protein family HMM PF03190
YP_001390417.1	identified by match to protein family HMM PF06081
YP_001390419.1	identified by match to protein family HMM PF02517
YP_001390420.1	identified by match to protein family HMM PF00753
YP_001390421.1	identified by match to protein family HMM PF00005
YP_001390422.1	identified by match to protein family HMM PF07670
YP_001390423.1	identified by match to protein family HMM PF03960
YP_001390425.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001390426.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992
YP_001390427.1	identified by match to protein family HMM PF07892
YP_001390428.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881
YP_001390429.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001390430.1	identified by Glimmer3
YP_001390431.1	associated with arginine deiminase pathway genes; probably functions in arginine catabolism
YP_001390432.1	identified by match to protein family HMM PF00571
YP_001390433.1	identified by Glimmer3
YP_001390434.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650
YP_001390435.1	identified by match to protein family HMM PF04023
YP_001390436.1	identified by match to protein family HMM PF07238
YP_001390437.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001390438.1	identified by match to protein family HMM PF02839
YP_001390439.1	identified by match to protein family HMM PF00583
YP_001390440.1	identified by match to protein family HMM PF00005
YP_001390441.1	identified by match to protein family HMM PF00528
YP_001390442.1	identified by match to protein family HMM PF03180
YP_001390443.1	identified by match to protein family HMM PF03180
YP_001390444.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001390446.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001390447.1	identified by match to protein family HMM PF02588
YP_001390449.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001390450.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001390451.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_001390452.1	identified by Glimmer3
YP_001390453.1	identified by match to protein family HMM PF01966
YP_001390454.1	identified by match to protein family HMM PF00171
YP_001390455.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001390456.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001390457.1	identified by match to protein family HMM PF01047
YP_001390458.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001390462.1	identified by match to protein family HMM PF00528
YP_001390463.1	identified by match to protein family HMM PF00528
YP_001390464.1	identified by match to protein family HMM PF00005
YP_001390466.1	identified by match to protein family HMM PF00583
YP_001390468.1	identified by Glimmer3
YP_001390469.1	identified by match to protein family HMM PF03956
YP_001390470.1	identified by match to protein family HMM PF00132
YP_001390471.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121
YP_001390473.1	identified by match to protein family HMM PF00571
YP_001390474.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390477.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_001390478.1	identified by match to protein family HMM PF00266
YP_001390479.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001390480.1	identified by match to protein family HMM PF06245
YP_001390481.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001390482.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001390483.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_001390484.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02080
YP_001390486.1	identified by match to protein family HMM PF00857
YP_001390487.1	identified by match to protein family HMM PF00581
YP_001390490.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001390491.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001390493.1	identified by match to protein family HMM PF00581
YP_001390494.1	identified by Glimmer3
YP_001390495.1	identified by match to protein family HMM PF01594
YP_001390496.1	identified by match to protein family HMM PF03819
YP_001390498.1	identified by Glimmer3
YP_001390499.1	identified by Glimmer3
YP_001390500.1	identified by Glimmer3
YP_001390501.1	identified by match to protein family HMM PF01547
YP_001390502.1	identified by match to protein family HMM PF00528
YP_001390503.1	identified by match to protein family HMM PF00005
YP_001390506.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001390507.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_001390509.1	identified by match to protein family HMM PF04392
YP_001390510.1	identified by match to protein family HMM PF02653
YP_001390511.1	identified by match to protein family HMM PF00005
YP_001390512.1	identified by Glimmer3
YP_001390513.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001390514.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449
YP_001390515.1	identified by Glimmer3
YP_001390516.1	identified by match to protein family HMM PF00294; match to protein family HMM PF08279
YP_001390517.1	identified by match to protein family HMM PF04227
YP_001390518.1	identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_001390519.1	identified by match to protein family HMM PF04961
YP_001390520.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_001390521.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001390522.1	identified by match to protein family HMM PF00583
YP_001390523.1	identified by Glimmer3
YP_001390525.1	identified by match to protein family HMM PF02535
YP_001390526.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001390527.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_001390528.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001390529.1	identified by match to protein family HMM PF00497
YP_001390530.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001390531.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268
YP_001390532.1	identified by Glimmer3
YP_001390533.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001390534.1	identified by Glimmer3
YP_001390535.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001390536.1	identified by Glimmer3
YP_001390537.1	identified by match to protein family HMM PF02518
YP_001390538.1	identified by match to protein family HMM PF00005
YP_001390540.1	identified by match to protein family HMM PF03009
YP_001390542.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176
YP_001390543.1	identified by match to protein family HMM PF00440
YP_001390544.1	identified by match to protein family HMM PF00999
YP_001390545.1	identified by match to protein family HMM PF02696
YP_001390546.1	identified by match to protein family HMM PF01593
YP_001390547.1	identified by match to protein family HMM PF00165
YP_001390548.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792
YP_001390549.1	identified by match to protein family HMM PF02055
YP_001390550.1	identified by match to protein family HMM PF00480
YP_001390551.1	identified by match to protein family HMM PF00232
YP_001390552.1	identified by match to protein family HMM PF00686; match to protein family HMM PF01373
YP_001390553.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001390554.1	identified by match to protein family HMM PF00392
YP_001390555.1	identified by match to protein family HMM PF00005
YP_001390560.1	identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239
YP_001390561.1	identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001390562.1	identified by Glimmer3
YP_001390563.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_001390564.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_001390565.1	identified by Glimmer3
YP_001390566.1	identified by Glimmer3
YP_001390567.1	identified by Glimmer3
YP_001390569.1	identified by match to protein family HMM PF00561
YP_001390570.1	identified by match to protein family HMM PF01244
YP_001390571.1	identified by Glimmer3
YP_001390572.1	identified by match to protein family HMM PF02687
YP_001390573.1	identified by Glimmer3
YP_001390574.1	identified by match to protein family HMM PF00005
YP_001390575.1	identified by match to protein family HMM PF00528
YP_001390576.1	identified by match to protein family HMM PF00528
YP_001390577.1	identified by match to protein family HMM PF00496
YP_001390580.1	identified by match to protein family HMM PF05067
YP_001390583.1	identified by match to protein family HMM PF04525
YP_001390584.1	identified by Glimmer3
YP_001390585.1	identified by match to protein family HMM PF00692
YP_001390586.1	identified by match to protein family HMM TIGR02861
YP_001390588.1	identified by similarity to GB:ABK61158.1
YP_001390589.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001390591.1	identified by match to protein family HMM PF00440
YP_001390592.1	identified by Glimmer3
YP_001390593.1	identified by match to protein family HMM PF00005
YP_001390595.1	identified by Glimmer3
YP_001390596.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001390597.1	identified by Glimmer3
YP_001390598.1	identified by Glimmer3
YP_001390599.1	identified by match to protein family HMM PF01381
YP_001390600.1	identified by Glimmer3
YP_001390603.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_001390604.1	identified by match to protein family HMM PF00171
YP_001390605.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001390607.1	identified by match to protein family HMM PF09338
YP_001390608.1	Selenoprotein. identified by similarity to GB:CAJ69237.1; match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918
YP_001390609.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_001390610.1	identified by match to protein family HMM PF00085
YP_001390611.1	GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin
YP_001390612.1	identified by match to protein family HMM PF08545
YP_001390613.1	identified by match to protein family HMM PF02504
YP_001390614.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_001390615.1	identified by match to protein family HMM PF07669
YP_001390616.1	identified by Glimmer3
YP_001390617.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_001390618.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001390619.1	identified by Glimmer3
YP_001390620.1	identified by match to protein family HMM PF00596
YP_001390621.1	identified by Glimmer3
YP_001390622.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001390624.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001390625.1	identified by match to protein family HMM PF04239
YP_001390631.1	identified by Glimmer3
YP_001390632.1	identified by Glimmer3
YP_001390635.1	molybdenum cofactor-binding protein; participates in purine salvage
YP_001390636.1	FAD-binding subunit; with XdhA and XdhC participates in purine salvage
YP_001390637.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001390638.1	identified by match to protein family HMM PF00383
YP_001390639.1	decatenates replicating daughter chromosomes
YP_001390640.1	identified by match to protein family HMM PF02659
YP_001390642.1	identified by Glimmer3
YP_001390643.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001390644.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_001390645.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001390646.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001390648.1	identified by match to protein family HMM PF00535
YP_001390653.1	identified by match to protein family HMM PF02583
YP_001390654.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_001390655.1	identified by match to protein family HMM PF00403
YP_001390656.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001390657.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001390658.1	identified by match to protein family HMM PF02517
YP_001390659.1	identified by match to protein family HMM PF02579
YP_001390660.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390661.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001390662.1	identified by match to protein family HMM PF00005
YP_001390663.1	identified by match to protein family HMM PF02687
YP_001390664.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001390665.1	identified by match to protein family HMM PF01243
YP_001390666.1	identified by Glimmer3
YP_001390667.1	identified by Glimmer3
YP_001390668.1	identified by similarity to GB:CAC97788.1
YP_001390669.1	identified by Glimmer3
YP_001390671.1	identified by similarity to GB:AAR06054.1
YP_001390672.1	identified by match to protein family HMM PF01230
YP_001390674.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_001390675.1	identified by match to protein family HMM PF07907
YP_001390676.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_001390677.1	identified by match to protein family HMM PF02386
YP_001390678.1	identified by Glimmer3
YP_001390679.1	identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573
YP_001390680.1	identified by match to protein family HMM PF07853
YP_001390681.1	identified by match to protein family HMM PF00392
YP_001390682.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07486
YP_001390683.1	identified by Glimmer3
YP_001390684.1	identified by match to protein family HMM PF02915
YP_001390685.1	identified by match to protein family HMM PF04122
YP_001390686.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_001390687.1	identified by match to protein family HMM PF01255
YP_001390688.1	identified by Glimmer3
YP_001390689.1	identified by Glimmer3
YP_001390690.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001390691.1	identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702
YP_001390692.1	identified by match to protein family HMM PF00037
YP_001390693.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001390694.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390695.1	identified by match to protein family HMM PF02518
YP_001390696.1	identified by match to protein family HMM PF02687
YP_001390697.1	identified by match to protein family HMM PF00005
YP_001390698.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_001390699.1	identified by Glimmer3
YP_001390700.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001390701.1	identified by match to protein family HMM PF07690
YP_001390702.1	identified by match to protein family HMM PF01497
YP_001390703.1	identified by match to protein family HMM PF01032
YP_001390704.1	identified by match to protein family HMM PF00005
YP_001390706.1	identified by match to protein family HMM PF00037
YP_001390707.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001390708.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_001390709.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_001390710.1	identified by match to protein family HMM PF05913
YP_001390711.1	identified by match to protein family HMM PF06475
YP_001390712.1	identified by match to protein family HMM PF06555
YP_001390715.1	identified by Glimmer3
YP_001390717.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF06875
YP_001390718.1	identified by match to protein family HMM PF00496
YP_001390719.1	identified by match to protein family HMM PF00528
YP_001390720.1	identified by match to protein family HMM PF00528
YP_001390721.1	identified by match to protein family HMM PF00005
YP_001390722.1	identified by match to protein family HMM PF00005
YP_001390724.1	identified by match to protein family HMM PF00950
YP_001390725.1	identified by match to protein family HMM PF00005
YP_001390726.1	identified by match to protein family HMM PF01297
YP_001390728.1	identified by match to protein family HMM PF00271
YP_001390729.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001390731.1	identified by match to protein family HMM PF00528
YP_001390732.1	identified by match to protein family HMM PF00005
YP_001390733.1	identified by match to protein family HMM PF01475
YP_001390734.1	identified by match to protein family HMM PF02001
YP_001390735.1	identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476
YP_001390736.1	identified by Glimmer3
YP_001390737.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_001390738.1	identified by match to protein family HMM PF00324
YP_001390739.1	identified by match to protein family HMM PF08000
YP_001390740.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_001390741.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001390742.1	identified by match to protein family HMM PF00005
YP_001390743.1	identified by match to protein family HMM PF01061
YP_001390744.1	identified by match to protein family HMM PF01061
YP_001390745.1	identified by Glimmer3
YP_001390746.1	identified by match to protein family HMM PF00881
YP_001390748.1	identified by match to protein family HMM PF00313
YP_001390749.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001390750.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001390751.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_001390752.1	identified by match to protein family HMM PF01625
YP_001390753.1	identified by match to protein family HMM PF00005
YP_001390754.1	identified by match to protein family HMM PF02687
YP_001390756.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390757.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390758.1	identified by match to protein family HMM PF00005
YP_001390762.1	identified by match to protein family HMM PF00155
YP_001390763.1	identified by match to protein family HMM PF00497
YP_001390764.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001390765.1	identified by match to protein family HMM PF00005
YP_001390766.1	identified by match to protein family HMM PF01381
YP_001390767.1	identified by match to protein family HMM PF00768
YP_001390768.1	identified by match to protein family HMM PF00293
YP_001390770.1	identified by match to protein family HMM PF00465
YP_001390771.1	identified by Glimmer3
YP_001390772.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808
YP_001390773.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_001390774.1	identified by match to protein family HMM PF00497
YP_001390775.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001390777.1	identified by Glimmer3
YP_001390778.1	identified by Glimmer3
YP_001390779.1	identified by match to protein family HMM PF02491
YP_001390780.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001390781.1	identified by match to protein family HMM PF01520
YP_001390782.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001390783.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_001390784.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900
YP_001390787.1	identified by match to protein family HMM PF00465
YP_001390788.1	identified by match to protein family HMM PF05362
YP_001390789.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390790.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390791.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390792.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390793.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390794.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001390795.1	identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078
YP_001390796.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001390797.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001390798.1	identified by Glimmer3
YP_001390799.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_001390800.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001390801.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001390802.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_001390804.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_001390805.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001390806.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_001390807.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001390808.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615
YP_001390809.1	identified by match to protein family HMM PF08478
YP_001390810.1	identified by match to protein family HMM PF05949
YP_001390811.1	identified by match to protein family HMM PF06947
YP_001390812.1	identified by match to protein family HMM PF05949
YP_001390813.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_001390814.1	identified by match to protein family HMM PF04472
YP_001390815.1	identified by match to protein family HMM PF02325
YP_001390817.1	identified by match to protein family HMM PF05103
YP_001390818.1	identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357
YP_001390819.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001390820.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_001390821.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001390822.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890
YP_001390823.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001390824.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001390825.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001390826.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_001390827.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001390828.1	identified by match to protein family HMM PF01170
YP_001390829.1	identified by Glimmer3
YP_001390830.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_001390831.1	identified by match to protein family HMM PF00528
YP_001390832.1	identified by match to protein family HMM PF00005
YP_001390834.1	identified by match to protein family HMM PF01734
YP_001390836.1	identified by match to protein family HMM PF01208
YP_001390837.1	identified by match to protein family HMM PF03553
YP_001390838.1	identified by match to protein family HMM PF00111
YP_001390839.1	identified by match to protein family HMM PF02492
YP_001390841.1	identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370
YP_001390842.1	catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M
YP_001390843.1	identified by match to protein family HMM PF01208
YP_001390844.1	identified by match to protein family HMM PF00005
YP_001390845.1	identified by match to protein family HMM PF00528
YP_001390846.1	identified by match to protein family HMM PF03180
YP_001390847.1	identified by match to protein family HMM PF02493
YP_001390848.1	identified by match to protein family HMM PF00724
YP_001390849.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_001390850.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_001390851.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01751
YP_001390852.1	identified by match to protein family HMM PF00488
YP_001390853.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00248
YP_001390854.1	identified by match to protein family HMM PF04073
YP_001390855.1	identified by match to protein family HMM PF00005
YP_001390856.1	identified by match to protein family HMM PF02687
YP_001390857.1	identified by match to protein family HMM PF00440
YP_001390859.1	identified by match to protein family HMM PF00005
YP_001390860.1	identified by match to protein family HMM PF00528
YP_001390861.1	identified by match to protein family HMM PF00528
YP_001390862.1	identified by match to protein family HMM PF01547
YP_001390863.1	identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771
YP_001390864.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001390865.1	identified by match to protein family HMM TIGR01909
YP_001390866.1	identified by match to protein family HMM PF03595
YP_001390867.1	identified by Glimmer3
YP_001390868.1	identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001390869.1	identified by match to protein family HMM PF03860
YP_001390870.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001390871.1	identified by match to protein family HMM PF01047
YP_001390873.1	identified by match to protein family HMM PF01638
YP_001390874.1	identified by match to protein family HMM PF00903
YP_001390875.1	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated
YP_001390876.1	identified by match to protein family HMM PF00165
YP_001390877.1	identified by match to protein family HMM PF06792
YP_001390879.1	identified by match to protein family HMM PF01381
YP_001390880.1	identified by Glimmer3
YP_001390881.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001390882.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001390883.1	identified by match to protein family HMM PF01325; match to protein family HMM PF02742
YP_001390885.1	identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277
YP_001390886.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001390887.1	identified by similarity to GB:ABJ57020.1
YP_001390888.1	identified by match to protein family HMM PF04657
YP_001390890.1	identified by match to protein family HMM PF00027
YP_001390891.1	identified by match to protein family HMM PF00005
YP_001390892.1	identified by match to protein family HMM PF01061
YP_001390893.1	identified by match to protein family HMM PF01061
YP_001390894.1	identified by match to protein family HMM PF00196
YP_001390895.1	identified by match to protein family HMM PF06445
YP_001390896.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001390897.1	identified by match to protein family HMM PF06050
YP_001390898.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001390899.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_001390900.1	identified by match to protein family HMM PF04055
YP_001390901.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001390902.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_001390903.1	identified by match to protein family HMM PF02517
YP_001390904.1	identified by match to protein family HMM PF00015
YP_001390905.1	identified by match to protein family HMM PF06161
YP_001390907.1	identified by match to protein family HMM PF04198
YP_001390908.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001390909.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_001390910.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001390911.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001390912.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001390913.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001390914.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001390915.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001390916.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001390917.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001390918.1	identified by match to protein family HMM PF04143
YP_001390919.1	identified by match to protein family HMM PF01206
YP_001390920.1	identified by match to protein family HMM PF04143
YP_001390921.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001390922.1	identified by match to protein family HMM PF01235
YP_001390923.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_001390924.1	identified by match to protein family HMM PF04143
YP_001390925.1	identified by match to protein family HMM PF00005
YP_001390928.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390929.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001390930.1	identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078
YP_001390931.1	identified by match to protein family HMM PF00324
YP_001390932.1	identified by match to protein family HMM PF08876
YP_001390933.1	identified by match to protein family HMM PF01966
YP_001390934.1	identified by Glimmer3
YP_001390935.1	identified by Glimmer3
YP_001390936.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455
YP_001390937.1	identified by match to protein family HMM PF04607
YP_001390939.1	identified by match to protein family HMM PF00165
YP_001390940.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001390941.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463
YP_001390942.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001390943.1	identified by match to protein family HMM PF00480
YP_001390944.1	identified by match to protein family HMM PF00128
YP_001390945.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003
YP_001390946.1	identified by match to protein family HMM PF03372
YP_001390947.1	identified by match to protein family HMM TIGR02840
YP_001390951.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001390952.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001390953.1	identified by match to protein family HMM PF07690
YP_001390954.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001390955.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001390956.1	identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001390958.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_001390959.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_001390960.1	identified by match to protein family HMM PF02965
YP_001390961.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607
YP_001390963.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001390965.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954
YP_001390966.1	identified by match to protein family HMM TIGR02058
YP_001390967.1	identified by match to protein family HMM PF00676
YP_001390968.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001390969.1	identified by match to protein family HMM PF01513
YP_001390970.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_001390971.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001390972.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_001390973.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_001390974.1	identified by match to protein family HMM PF00528; match to protein family HMM PF04069
YP_001390975.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001390976.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_001390977.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_001390978.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001390979.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001390980.1	identified by match to protein family HMM PF00465
YP_001390981.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001390982.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001390983.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001390984.1	identified by match to protein family HMM PF00805
YP_001390985.1	identified by match to protein family HMM PF02368
YP_001390986.1	identified by Glimmer3
YP_001390989.1	identified by Glimmer3
YP_001390990.1	identified by match to protein family HMM PF01471
YP_001390991.1	identified by Glimmer3
YP_001390993.1	identified by match to protein family HMM PF01814
YP_001390994.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001390995.1	identified by match to protein family HMM PF00015
YP_001390996.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_001390997.1	identified by match to protein family HMM PF06161
YP_001390998.1	identified by match to protein family HMM PF00106
YP_001390999.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001391000.1	identified by match to protein family HMM PF07656
YP_001391002.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455
YP_001391004.2	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001391005.1	identified by match to protein family HMM PF00440
YP_001391006.1	identified by Glimmer3
YP_001391007.1	identified by Glimmer3
YP_001391008.1	identified by Glimmer3
YP_001391009.1	identified by Glimmer3
YP_001391010.1	identified by Glimmer3
YP_001391011.1	identified by match to protein family HMM PF00929
YP_001391012.1	identified by match to protein family HMM PF06207
YP_001391013.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001391015.1	identified by match to protein family HMM PF07690
YP_001391016.1	identified by match to protein family HMM PF00440
YP_001391017.1	identified by similarity to GB:BAB80292.1
YP_001391018.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_001391019.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001391020.1	identified by Glimmer3
YP_001391023.1	identified by Glimmer3
YP_001391024.1	identified by match to protein family HMM PF00294; match to protein family HMM PF08543
YP_001391025.1	identified by match to protein family HMM PF00188; match to protein family HMM PF01476
YP_001391026.1	identified by Glimmer3
YP_001391027.1	identified by match to protein family HMM PF00313
YP_001391028.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001391029.1	identified by match to protein family HMM PF00005
YP_001391030.1	identified by match to protein family HMM PF04073
YP_001391031.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001391032.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584
YP_001391033.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001391034.1	identified by match to protein family HMM PF00575
YP_001391035.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_001391036.1	identified by Glimmer3
YP_001391037.1	identified by match to protein family HMM PF00560; match to protein family HMM PF07532
YP_001391038.1	identified by match to protein family HMM PF01832
YP_001391039.1	identified by match to protein family HMM PF00210
YP_001391040.1	identified by Glimmer3
YP_001391041.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04509
YP_001391042.1	identified by match to protein family HMM PF04509
YP_001391043.1	identified by match to protein family HMM PF07670
YP_001391044.1	identified by match to protein family HMM PF00269
YP_001391045.1	identified by match to protein family HMM PF00269
YP_001391046.1	Selenoprotein. identified by similarity to GB:AAO35429.1; match to protein family HMM TIGR01911
YP_001391047.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001391049.1	Represses a number of genes involved in the response to DNA damage
YP_001391050.1	identified by match to protein family HMM PF06838
YP_001391051.1	identified by Glimmer3
YP_001391052.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_001391053.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001391054.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001391055.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001391056.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001391057.1	identified by match to protein family HMM PF00155
YP_001391058.1	identified by similarity to GB:ABK61786.1
YP_001391059.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001391060.1	identified by match to protein family HMM PF00583
YP_001391061.1	identified by match to protein family HMM TIGR02906
YP_001391062.1	these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001391063.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001391064.1	identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796
YP_001391065.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_001391066.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_001391067.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001391068.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001391070.1	identified by match to protein family HMM PF06354
YP_001391071.1	identified by match to protein family HMM PF00535
YP_001391072.1	identified by Glimmer3
YP_001391073.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001391074.1	identified by match to protein family HMM PF02683
YP_001391075.1	identified by match to protein family HMM PF00085
YP_001391076.1	identified by match to protein family HMM PF00795
YP_001391077.1	identified by Glimmer3
YP_001391078.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080
YP_001391079.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001391080.1	identified by match to protein family HMM PF00583
YP_001391082.1	identified by match to protein family HMM PF01906
YP_001391083.1	identified by Glimmer3
YP_001391085.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229
YP_001391086.1	identified by match to protein family HMM PF07228
YP_001391087.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229
YP_001391088.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124
YP_001391089.1	identified by match to protein family HMM PF01924
YP_001391090.1	identified by Glimmer3
YP_001391091.1	identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143
YP_001391092.1	identified by Glimmer3
YP_001391093.1	identified by match to protein family HMM PF00173
YP_001391094.1	identified by match to protein family HMM PF01750
YP_001391095.1	identified by match to protein family HMM PF00374
YP_001391096.1	identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391
YP_001391098.1	identified by Glimmer3
YP_001391099.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001391100.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001391101.1	identified by Glimmer3
YP_001391102.1	identified by Glimmer3
YP_001391103.1	identified by Glimmer3
YP_001391104.1	identified by Glimmer3
YP_001391105.1	identified by Glimmer3
YP_001391106.1	identified by match to protein family HMM PF00005
YP_001391107.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512
YP_001391108.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01512
YP_001391109.1	identified by match to protein family HMM PF01257
YP_001391110.1	identified by match to protein family HMM PF00999
YP_001391111.1	identified by match to protein family HMM PF03747
YP_001391112.1	identified by match to protein family HMM PF01594
YP_001391113.1	identified by match to protein family HMM PF00768
YP_001391115.1	identified by match to protein family HMM TIGR02874
YP_001391116.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_001391117.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_001391119.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_001391121.1	identified by match to protein family HMM PF03372
YP_001391123.1	identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644
YP_001391124.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001391125.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225
YP_001391126.1	identified by similarity to GB:AAK80026.1
YP_001391127.1	identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831
YP_001391128.1	identified by Glimmer3
YP_001391129.1	identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052
YP_001391130.1	identified by match to protein family HMM PF00324
YP_001391131.1	identified by match to protein family HMM PF00877
YP_001391132.1	identified by Glimmer3
YP_001391133.1	identified by similarity to GB:AAY80811.1
YP_001391134.1	identified by Glimmer3
YP_001391135.1	identified by match to protein family HMM PF01520; match to protein family HMM PF08239
YP_001391138.1	identified by Glimmer3
YP_001391139.1	identified by Glimmer3
YP_001391140.1	identified by Glimmer3
YP_001391141.1	identified by Glimmer3
YP_001391142.1	identified by Glimmer3
YP_001391143.1	identified by Glimmer3
YP_001391144.1	identified by similarity to GB:BAD74826.1
YP_001391145.1	identified by Glimmer3
YP_001391146.1	identified by similarity to GB:AAS39346.1
YP_001391147.1	identified by match to protein family HMM TIGR01760
YP_001391148.1	identified by Glimmer3
YP_001391149.1	identified by similarity to GB:ABG87923.1
YP_001391150.1	identified by match to protein family HMM TIGR01603
YP_001391151.1	identified by similarity to GB:AAU40455.1
YP_001391152.1	identified by match to protein family HMM TIGR01725
YP_001391153.1	identified by match to protein family HMM PF06264; match to protein family HMM TIGR01563
YP_001391154.1	identified by match to protein family HMM TIGR01560
YP_001391155.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_001391156.1	identified by match to protein family HMM PF00574
YP_001391157.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_001391158.1	identified by Glimmer3
YP_001391159.1	identified by match to protein family HMM PF03354
YP_001391160.1	identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558
YP_001391161.1	identified by similarity to GB:AAO36630.1
YP_001391162.1	identified by similarity to GB:CAE15648.1
YP_001391163.1	identified by Glimmer3
YP_001391164.1	identified by Glimmer3
YP_001391165.1	identified by Glimmer3
YP_001391166.1	identified by similarity to GB:AAF07545.1
YP_001391167.1	identified by Glimmer3
YP_001391168.1	identified by Glimmer3
YP_001391169.1	identified by similarity to RF:XP_656249.1
YP_001391170.1	identified by Glimmer3
YP_001391171.1	identified by Glimmer3
YP_001391172.1	identified by match to protein family HMM PF01541
YP_001391173.1	identified by Glimmer3
YP_001391174.1	identified by Glimmer3
YP_001391175.1	identified by similarity to GB:AAK79112.1
YP_001391176.1	identified by similarity to GB:AAT57259.1
YP_001391177.1	identified by Glimmer3
YP_001391178.1	identified by Glimmer3
YP_001391179.1	identified by Glimmer3
YP_001391180.1	identified by Glimmer3
YP_001391181.1	identified by similarity to GB:AAT51976.1
YP_001391182.1	identified by match to protein family HMM PF01381
YP_001391183.1	identified by Glimmer3
YP_001391184.1	identified by Glimmer3
YP_001391185.1	identified by Glimmer3
YP_001391186.1	identified by Glimmer3
YP_001391187.1	identified by Glimmer3
YP_001391188.1	identified by Glimmer3
YP_001391189.1	identified by similarity to GB:AAP08290.1
YP_001391190.1	identified by similarity to GB:BAD58804.1
YP_001391191.1	identified by Glimmer3
YP_001391192.1	identified by Glimmer3
YP_001391193.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_001391194.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875
YP_001391195.1	identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860
YP_001391196.1	identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001
YP_001391197.1	identified by match to protein family HMM PF00742; match to protein family HMM PF03447
YP_001391198.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_001391199.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_001391200.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_001391201.1	identified by match to protein family HMM PF01513
YP_001391202.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_001391203.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001391205.1	identified by match to protein family HMM PF00348
YP_001391206.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_001391207.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001391208.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001391209.1	identified by match to protein family HMM PF03780
YP_001391211.1	identified by match to protein family HMM TIGR02830
YP_001391212.1	identified by match to protein family HMM TIGR02896
YP_001391213.1	identified by match to protein family HMM TIGR02829
YP_001391214.1	identified by match to protein family HMM TIGR02849
YP_001391215.1	identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848
YP_001391216.1	necessary for complete engulfment of forespore
YP_001391217.1	identified by match to protein family HMM TIGR02858
YP_001391219.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001391220.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001391221.1	identified by match to protein family HMM PF01202
YP_001391223.1	identified by Glimmer3
YP_001391226.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001391227.1	identified by match to protein family HMM TIGR02532
YP_001391229.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001391230.1	identified by match to protein family HMM PF00482
YP_001391231.1	identified by match to protein family HMM PF00437; match to protein family HMM PF05157
YP_001391232.1	identified by Glimmer3
YP_001391234.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001391235.1	identified by match to protein family HMM PF05670; match to protein family HMM PF05833
YP_001391236.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001391237.1	identified by Glimmer3
YP_001391238.1	identified by match to protein family HMM PF01230
YP_001391239.1	identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788
YP_001391240.1	identified by Glimmer3
YP_001391241.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001391242.1	identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806
YP_001391244.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391245.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001391246.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_001391247.1	identified by match to protein family HMM PF00072
YP_001391248.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001391249.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391252.1	identified by match to protein family HMM PF00005
YP_001391253.1	identified by Glimmer3
YP_001391254.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001391255.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001391256.1	identified by match to protein family HMM PF01047
YP_001391257.1	identified by similarity to SP:P39909; match to protein family HMM PF00583
YP_001391258.1	identified by match to protein family HMM PF00899
YP_001391259.1	identified by match to protein family HMM PF02597
YP_001391260.1	identified by match to protein family HMM PF01314; match to protein family HMM PF02730
YP_001391261.1	identified by Glimmer3
YP_001391262.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001391263.1	identified by match to protein family HMM PF03473
YP_001391264.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001391265.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_001391266.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001391267.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001391268.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_001391269.1	identified by match to protein family HMM PF00005
YP_001391270.1	identified by match to protein family HMM PF00528
YP_001391271.1	identified by match to protein family HMM PF01547
YP_001391272.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001391273.1	identified by Glimmer3
YP_001391274.1	identified by match to protein family HMM PF09335
YP_001391275.1	identified by match to protein family HMM PF00005
YP_001391276.1	identified by match to protein family HMM PF02687
YP_001391277.1	identified by Glimmer3
YP_001391278.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001391279.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001391280.1	identified by match to protein family HMM PF00376
YP_001391281.1	identified by match to protein family HMM PF03358
YP_001391282.1	identified by match to protein family HMM PF00560
YP_001391283.1	identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296
YP_001391284.1	identified by match to protein family HMM PF00158; match to protein family HMM PF07728
YP_001391286.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_001391287.1	identified by match to protein family HMM PF00375
YP_001391288.1	identified by match to protein family HMM PF00155
YP_001391289.1	identified by match to protein family HMM PF06354
YP_001391290.1	identified by match to protein family HMM PF00560
YP_001391291.1	identified by match to protein family HMM TIGR03296
YP_001391292.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001391293.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391294.1	identified by match to protein family HMM PF02596
YP_001391295.1	identified by match to protein family HMM PF02361
YP_001391296.1	identified by match to protein family HMM PF00005
YP_001391298.1	identified by match to protein family HMM PF01168
YP_001391299.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001391300.1	identified by match to protein family HMM PF03323
YP_001391301.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001391302.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001391303.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001391304.1	identified by match to protein family HMM TIGR01909
YP_001391305.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001391306.1	identified by match to protein family HMM PF04055
YP_001391307.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001391308.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_001391309.1	molecular chaperone
YP_001391310.1	identified by match to protein family HMM PF00488
YP_001391311.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_001391312.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403
YP_001391313.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404
YP_001391314.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848
YP_001391315.1	identified by Glimmer3
YP_001391316.1	identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427
YP_001391317.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_001391318.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_001391319.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001391321.1	identified by match to protein family HMM PF01042
YP_001391322.1	identified by match to protein family HMM PF04055
YP_001391323.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001391324.1	identified by Glimmer3
YP_001391325.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001391326.1	identified by Glimmer3
YP_001391327.1	identified by match to protein family HMM PF01168
YP_001391329.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001391330.1	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
YP_001391331.1	identified by match to protein family HMM PF00860
YP_001391332.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001391333.1	identified by match to protein family HMM PF06354
YP_001391334.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001391335.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001391336.1	identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909
YP_001391337.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001391338.1	identified by match to protein family HMM PF00892
YP_001391339.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001391340.1	identified by match to protein family HMM PF00005
YP_001391341.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001391342.1	identified by match to protein family HMM PF00497
YP_001391344.1	identified by match to protein family HMM PF00266
YP_001391345.1	identified by match to protein family HMM PF00302
YP_001391349.1	identified by match to protein family HMM PF01381
YP_001391350.1	identified by similarity to GB:AAO36439.1
YP_001391351.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001391352.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001391353.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001391354.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250
YP_001391355.1	identified by Glimmer3
YP_001391356.1	identified by match to protein family HMM PF00209
YP_001391357.1	identified by Glimmer3
YP_001391359.1	identified by match to protein family HMM PF00881
YP_001391360.1	identified by Glimmer3
YP_001391361.1	identified by Glimmer3
YP_001391363.1	similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001391364.1	identified by match to protein family HMM PF00440
YP_001391365.1	identified by Glimmer3
YP_001391366.1	identified by Glimmer3
YP_001391367.1	identified by Glimmer3
YP_001391368.1	identified by match to protein family HMM PF00132
YP_001391369.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001391370.1	identified by Glimmer3
YP_001391371.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208
YP_001391372.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_001391373.1	identified by Glimmer3
YP_001391377.1	identified by match to protein family HMM PF04892
YP_001391378.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_001391379.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_001391380.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_001391381.1	identified by match to protein family HMM PF02133
YP_001391382.1	identified by Glimmer3
YP_001391383.1	identified by match to protein family HMM PF04055
YP_001391384.1	identified by Glimmer3
YP_001391385.1	identified by similarity to SP:P05302; match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_001391387.1	identified by Glimmer3
YP_001391388.1	identified by similarity to GB:ABB49434.1
YP_001391389.1	identified by similarity to GB:BAC12130.1
YP_001391390.1	identified by Glimmer3
YP_001391391.1	identified by Glimmer3
YP_001391392.1	identified by Glimmer3
YP_001391393.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001391394.1	identified by match to protein family HMM PF00535
YP_001391395.1	identified by match to protein family HMM PF00534
YP_001391396.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231
YP_001391397.1	identified by match to protein family HMM PF02839; match to protein family HMM PF03272
YP_001391398.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_001391399.1	identified by similarity to GB:BAE81951.1; match to protein family HMM PF02583
YP_001391400.1	identified by match to protein family HMM PF00936
YP_001391401.1	identified by match to protein family HMM PF06130
YP_001391402.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518
YP_001391403.1	identified by match to protein family HMM PF00936
YP_001391404.1	identified by match to protein family HMM PF05899; match to protein family HMM PF06249
YP_001391405.1	identified by match to protein family HMM PF03319
YP_001391406.1	identified by match to protein family HMM PF00936
YP_001391407.1	identified by match to protein family HMM TIGR02529
YP_001391410.1	identified by match to protein family HMM PF00936
YP_001391411.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494
YP_001391412.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901
YP_001391414.1	identified by match to protein family HMM PF00936
YP_001391415.1	identified by match to protein family HMM PF00936
YP_001391416.1	identified by Glimmer3
YP_001391417.1	identified by Glimmer3
YP_001391419.1	identified by match to protein family HMM PF00376
YP_001391420.1	identified by match to protein family HMM PF00465
YP_001391421.1	identified by match to protein family HMM PF01554
YP_001391422.1	identified by match to protein family HMM PF07690
YP_001391423.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001391424.1	identified by match to protein family HMM PF00583; match to protein family HMM PF01047
YP_001391425.1	identified by Glimmer3
YP_001391427.1	identified by match to protein family HMM PF09234
YP_001391429.1	identified by match to protein family HMM TIGR01764
YP_001391430.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_001391431.1	identified by Glimmer3
YP_001391432.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001391433.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391436.1	identified by match to protein family HMM PF00005
YP_001391437.1	identified by match to protein family HMM PF02687
YP_001391438.1	FAD/NAD(P)-binding domain
YP_001391441.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001391442.1	identified by match to protein family HMM PF01261
YP_001391443.1	identified by match to protein family HMM PF01761
YP_001391444.1	identified by match to protein family HMM PF02687
YP_001391445.1	identified by match to protein family HMM PF00005
YP_001391447.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279
YP_001391448.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_001391449.1	identified by match to protein family HMM PF02302
YP_001391450.1	identified by match to protein family HMM PF00359
YP_001391451.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001391452.1	identified by Glimmer3
YP_001391453.1	identified by Glimmer3
YP_001391454.1	identified by Glimmer3
YP_001391456.1	identified by match to protein family HMM PF00132
YP_001391457.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001391458.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001391459.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001391461.1	identified by Glimmer3
YP_001391462.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_001391463.1	identified by match to protein family HMM PF00376
YP_001391464.1	identified by Glimmer3
YP_001391465.1	identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898
YP_001391466.1	identified by match to protein family HMM TIGR01881
YP_001391467.1	identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580
YP_001391468.1	identified by Glimmer3
YP_001391471.1	identified by match to protein family HMM TIGR01894
YP_001391472.1	identified by match to protein family HMM TIGR01877
YP_001391474.1	identified by Glimmer3
YP_001391475.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001391476.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001391477.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001391478.1	identified by match to protein family HMM PF00903
YP_001391479.1	identified by similarity to GB:AAK78435.1
YP_001391481.1	identified by match to protein family HMM PF07859
YP_001391482.1	identified by Glimmer3
YP_001391483.1	identified by match to protein family HMM PF00324; match to protein family HMM PF05525
YP_001391484.1	identified by match to protein family HMM PF00069
YP_001391485.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001391487.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001391488.1	identified by match to protein family HMM PF01012
YP_001391489.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001391490.1	identified by Glimmer3
YP_001391491.1	identified by match to protein family HMM PF06050
YP_001391492.1	identified by match to protein family HMM PF06050
YP_001391493.1	identified by match to protein family HMM PF02515
YP_001391494.1	identified by match to protein family HMM PF00037
YP_001391495.1	identified by match to protein family HMM PF06050
YP_001391496.1	identified by match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241
YP_001391497.1	identified by match to protein family HMM PF00015
YP_001391498.1	identified by Glimmer3
YP_001391500.1	identified by similarity to SP:P54965; match to protein family HMM PF02275
YP_001391501.1	identified by match to protein family HMM PF00583
YP_001391502.1	identified by similarity to SP:Q92AV8; match to protein family HMM PF00903
YP_001391503.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791
YP_001391504.1	identified by Glimmer3
YP_001391505.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001391507.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001391508.1	identified by Glimmer3
YP_001391509.1	identified by match to protein family HMM PF02517
YP_001391510.1	identified by match to protein family HMM PF03734
YP_001391511.1	identified by Glimmer3
YP_001391512.1	identified by match to protein family HMM PF00440
YP_001391516.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001391517.1	identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702
YP_001391518.1	identified by match to protein family HMM PF01155
YP_001391519.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073
YP_001391520.1	identified by match to protein family HMM PF02579
YP_001391521.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01656
YP_001391522.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01656
YP_001391523.1	identified by match to protein family HMM PF02579
YP_001391524.1	identified by Glimmer3
YP_001391525.1	identified by match to protein family HMM PF00691
YP_001391526.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_001391527.1	identified by match to protein family HMM PF04122
YP_001391530.1	identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733
YP_001391531.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001391532.1	identified by match to protein family HMM PF01212
YP_001391533.1	identified by Glimmer3
YP_001391534.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_001391535.1	identified by Glimmer3
YP_001391536.1	identified by match to protein family HMM PF00106
YP_001391538.1	identified by match to protein family HMM PF00005
YP_001391539.1	identified by match to protein family HMM PF00583
YP_001391540.1	identified by match to protein family HMM PF01047
YP_001391541.1	identified by Glimmer3
YP_001391543.1	identified by match to protein family HMM PF01208
YP_001391544.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001391545.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_001391546.1	identified by match to protein family HMM PF00324
YP_001391547.1	identified by match to protein family HMM PF01661
YP_001391548.1	identified by match to protein family HMM PF06961
YP_001391549.1	identified by Glimmer3
YP_001391550.1	identified by match to protein family HMM PF01047
YP_001391552.1	identified by Glimmer3
YP_001391553.1	identified by match to protein family HMM PF02110
YP_001391554.1	identified by match to protein family HMM TIGR02359
YP_001391555.1	identified by match to protein family HMM PF00583
YP_001391556.1	identified by match to protein family HMM PF00753
YP_001391558.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001391559.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_001391560.1	identified by match to protein family HMM PF02632
YP_001391562.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01047
YP_001391564.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001391565.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001391566.1	identified by Glimmer3
YP_001391567.1	identified by Glimmer3
YP_001391569.1	identified by Glimmer3
YP_001391570.1	identified by match to protein family HMM PF02275; match to protein family HMM PF03417
YP_001391571.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001391572.1	identified by Glimmer3
YP_001391573.1	identified by Glimmer3
YP_001391576.1	identified by Glimmer3
YP_001391577.1	identified by similarity to GB:ABG82857.1
YP_001391579.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_001391580.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_001391581.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001391582.1	identified by match to protein family HMM PF00165
YP_001391583.1	identified by Glimmer3
YP_001391586.1	identified by match to protein family HMM PF00005
YP_001391587.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001391588.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391589.1	identified by match to protein family HMM PF00929
YP_001391590.1	identified by match to protein family HMM PF07876
YP_001391591.1	identified by match to protein family HMM PF00753
YP_001391592.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_001391593.1	identified by match to protein family HMM PF01381
YP_001391594.1	involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links
YP_001391595.1	identified by Glimmer3
YP_001391596.1	identified by Glimmer3
YP_001391597.1	identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753
YP_001391598.1	identified by similarity to SP:Q59931; match to protein family HMM PF00171
YP_001391599.1	identified by similarity to SP:P49852; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08030
YP_001391600.1	identified by Glimmer3
YP_001391601.1	identified by match to protein family HMM PF02366
YP_001391604.1	identified by Glimmer3
YP_001391605.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_001391606.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001391607.1	identified by similarity to GB:CAJ67102.1
YP_001391608.1	identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001391610.1	identified by similarity to SP:P41371; match to protein family HMM PF00269
YP_001391611.1	identified by Glimmer3
YP_001391612.1	identified by Glimmer3
YP_001391613.1	identified by Glimmer3
YP_001391614.1	identified by Glimmer3
YP_001391615.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001391616.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391617.1	identified by match to protein family HMM PF00627
YP_001391618.1	identified by Glimmer3
YP_001391622.1	identified by Glimmer3
YP_001391623.1	identified by Glimmer3
YP_001391624.1	identified by similarity to GB:AAO36961.1; match to protein family HMM PF04307
YP_001391625.1	identified by match to protein family HMM PF00877
YP_001391626.1	identified by Glimmer3
YP_001391627.1	identified by match to protein family HMM PF01381
YP_001391628.1	identified by Glimmer3
YP_001391629.1	identified by similarity to SP:P07945; match to protein family HMM PF00239
YP_001391630.1	identified by Glimmer3
YP_001391631.1	identified by similarity to GB:CAC97788.1
YP_001391632.1	identified by match to protein family HMM PF01520; match to protein family HMM PF08239
YP_001391635.1	identified by Glimmer3
YP_001391636.1	identified by similarity to GB:CAJ67810.1
YP_001391637.1	identified by Glimmer3
YP_001391640.1	identified by match to protein family HMM PF04865
YP_001391644.1	identified by match to protein family HMM PF01476
YP_001391646.1	identified by Glimmer3
YP_001391650.1	identified by Glimmer3
YP_001391652.1	identified by Glimmer3
YP_001391655.1	identified by Glimmer3
YP_001391657.1	identified by match to protein family HMM PF06810
YP_001391658.1	identified by similarity to SP:Q38441
YP_001391659.1	identified by similarity to GB:AAK79862.1
YP_001391660.1	identified by Glimmer3
YP_001391661.1	identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641
YP_001391662.1	identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538
YP_001391663.1	identified by match to protein family HMM TIGR01630
YP_001391664.1	identified by match to protein family HMM PF03592
YP_001391665.1	identified by Glimmer3
YP_001391666.1	identified by Glimmer3
YP_001391667.1	identified by match to protein family HMM PF00176
YP_001391668.1	identified by Glimmer3
YP_001391670.1	identified by Glimmer3
YP_001391671.1	identified by match to protein family HMM PF05272
YP_001391672.1	identified by similarity to GB:ABK61948.1
YP_001391673.1	identified by Glimmer3
YP_001391675.1	identified by match to protein family HMM PF00145
YP_001391676.1	identified by similarity to SP:P06225; match to protein family HMM PF00476
YP_001391678.1	identified by Glimmer3
YP_001391679.1	identified by similarity to GB:ABJ60829.1
YP_001391680.1	identified by similarity to GB:AAW39635.1
YP_001391681.1	identified by Glimmer3
YP_001391682.1	identified by Glimmer3
YP_001391683.1	identified by Glimmer3
YP_001391684.1	identified by similarity to GB:AAL96800.1
YP_001391685.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001391686.1	identified by Glimmer3
YP_001391688.1	identified by Glimmer3
YP_001391689.1	identified by match to protein family HMM PF01381
YP_001391690.1	identified by match to protein family HMM PF01381
YP_001391691.1	identified by match to protein family HMM PF00239
YP_001391692.1	identified by match to protein family HMM PF01134
YP_001391693.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001391694.1	identified by match to protein family HMM PF04070
YP_001391695.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_001391696.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001391697.1	identified by match to protein family HMM PF00892; match to protein family HMM PF00893
YP_001391699.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_001391700.1	identified by match to protein family HMM PF04232
YP_001391701.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001391702.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001391703.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_001391704.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125
YP_001391705.1	identified by match to protein family HMM PF01580
YP_001391706.1	identified by match to protein family HMM PF00574
YP_001391707.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_001391708.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_001391709.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001391710.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_001391711.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001391712.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001391713.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001391714.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_001391715.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001391716.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001391717.1	identified by match to protein family HMM PF01248
YP_001391718.1	identified by match to protein family HMM PF04296
YP_001391719.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001391720.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001391721.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_001391722.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001391723.1	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_001391724.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001391726.1	identified by Glimmer3
YP_001391727.1	identified by Glimmer3
YP_001391728.1	identified by match to protein family HMM PF01148
YP_001391729.1	catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate
YP_001391730.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001391731.1	Catalyzes the phosphorylation of UMP to UDP
YP_001391732.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001391733.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001391734.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_001391735.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001391736.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_001391737.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_001391738.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_001391739.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001391740.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_001391741.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001391742.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001391743.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001391744.1	Essential for efficient processing of 16S rRNA
YP_001391746.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001391747.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_001391748.1	identified by match to protein family HMM PF04297
YP_001391749.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_001391750.1	identified by match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168
YP_001391751.1	identified by Glimmer3
YP_001391752.1	identified by match to protein family HMM PF04055
YP_001391753.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001391754.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001391755.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001391756.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001391757.1	identified by match to protein family HMM PF02620
YP_001391758.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001391759.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_001391761.1	Selenoprotein. identified by similarity to GB:CAB38127.2
YP_001391762.1	identified by Glimmer3
YP_001391763.1	identified by match to protein family HMM PF09338
YP_001391765.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001391768.1	identified by Glimmer3
YP_001391769.1	identified by match to protein family HMM PF00324
YP_001391771.1	identified by match to protein family HMM PF05544
YP_001391774.1	Selenoprotein. identified by similarity to GB:CAB38127.2
YP_001391775.1	identified by Glimmer3
YP_001391776.1	identified by match to protein family HMM PF09338
YP_001391777.1	identified by Glimmer3
YP_001391778.1	identified by match to protein family HMM PF01512
YP_001391779.1	identified by Glimmer3
YP_001391782.1	identified by Glimmer3
YP_001391784.1	identified by match to protein family HMM PF01512
YP_001391785.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001391786.1	identified by match to protein family HMM PF05636
YP_001391787.1	identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871
YP_001391789.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001391790.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_001391791.1	catalyzes branch migration in Holliday junction intermediates
YP_001391792.1	identified by match to protein family HMM PF02734
YP_001391793.1	identified by match to protein family HMM PF03780
YP_001391794.1	required for 70S ribosome assembly
YP_001391795.1	identified by Glimmer3
YP_001391797.1	identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378
YP_001391798.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001391799.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001391800.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714
YP_001391801.1	identified by match to protein family HMM PF00481
YP_001391802.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001391803.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_001391804.1	identified by match to protein family HMM PF04298
YP_001391805.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001391806.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001391807.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001391808.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001391809.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001391810.1	Essential for recycling GMP and indirectly, cGMP
YP_001391811.1	identified by match to protein family HMM PF04025
YP_001391812.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_001391813.1	identified by match to protein family HMM PF00710
YP_001391814.1	identified by match to protein family HMM TIGR02836
YP_001391815.1	identified by Glimmer3
YP_001391816.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001391817.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001391818.1	identified by match to protein family HMM PF04459
YP_001391819.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_001391820.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001391821.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_001391822.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_001391823.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_001391824.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001391825.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001391826.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_001391827.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_001391828.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_001391829.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_001391830.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_001391831.1	identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854
YP_001391832.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001391833.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_001391834.1	identified by match to protein family HMM PF00535
YP_001391835.1	identified by Glimmer3
YP_001391836.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420
YP_001391837.1	identified by match to protein family HMM PF01488; match to protein family HMM PF08501
YP_001391838.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_001391841.1	identified by Glimmer3
YP_001391842.1	identified by Glimmer3
YP_001391843.1	identified by match to protein family HMM TIGR02271
YP_001391844.1	identified by match to protein family HMM TIGR02271
YP_001391845.1	identified by Glimmer3
YP_001391846.1	identified by Glimmer3
YP_001391848.1	identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616
YP_001391849.1	identified by Glimmer3
YP_001391850.1	identified by match to protein family HMM PF00905
YP_001391851.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_001391852.1	identified by match to protein family HMM PF01136
YP_001391853.1	identified by match to protein family HMM PF01596
YP_001391854.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_001391855.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_001391856.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_001391857.1	identified by match to protein family HMM PF01475
YP_001391858.1	identified by match to protein family HMM PF06949
YP_001391859.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001391860.1	identified by match to protein family HMM PF06135
YP_001391861.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001391862.1	identified by match to protein family HMM PF01594
YP_001391864.1	identified by match to protein family HMM PF01592
YP_001391865.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001391866.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001391867.1	identified by match to protein family HMM PF00004
YP_001391868.1	identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856
YP_001391869.1	identified by match to protein family HMM PF03547
YP_001391870.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001391871.1	identified by match to protein family HMM PF01206
YP_001391872.1	catalyzes the formation of L-proline from L-ornithine
YP_001391873.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001391874.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001391877.1	identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857
YP_001391878.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001391879.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01326
YP_001391881.1	identified by match to protein family HMM PF00501
YP_001391882.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001391884.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550
YP_001391885.1	identified by match to protein family HMM PF00583
YP_001391889.1	identified by Glimmer3
YP_001391890.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001391891.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001391892.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001391893.1	identified by match to protein family HMM PF06738
YP_001391895.1	identified by match to protein family HMM PF02583
YP_001391896.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001391898.1	identified by Glimmer3
YP_001391899.1	identified by Glimmer3
YP_001391900.1	identified by Glimmer3
YP_001391902.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001391903.1	identified by match to protein family HMM PF01544
YP_001391904.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_001391905.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001391906.1	identified by match to protein family HMM PF05979
YP_001391907.1	identified by match to protein family HMM PF09335
YP_001391908.1	identified by match to protein family HMM PF09335
YP_001391909.1	identified by match to protein family HMM PF02754
YP_001391912.1	identified by match to protein family HMM PF00535
YP_001391913.1	identified by match to protein family HMM PF00581
YP_001391914.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001391915.1	identified by Glimmer3
YP_001391917.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001391919.1	identified by match to protein family HMM PF01156
YP_001391920.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_001391921.1	identified by Glimmer3
YP_001391922.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_001391923.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_001391924.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_001391925.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex
YP_001391926.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex
YP_001391927.1	identified by match to protein family HMM PF01991
YP_001391928.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_001391929.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.
YP_001391931.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_001391933.1	identified by match to protein family HMM PF00882
YP_001391935.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001391936.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001391937.1	identified by Glimmer3
YP_001391938.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene
YP_001391939.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene
YP_001391942.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937
YP_001391943.1	identified by match to protein family HMM PF07238
YP_001391944.1	identified by match to protein family HMM PF01656
YP_001391945.1	positive regulator of class III flagellar genes
YP_001391946.1	membrane protein involved in the flagellar export apparatus
YP_001391947.1	FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined
YP_001391948.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402
YP_001391949.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001391951.1	identified by match to protein family HMM PF03748
YP_001391952.1	identified by match to protein family HMM PF00691
YP_001391953.1	identified by match to protein family HMM PF01618
YP_001391954.1	identified by match to protein family HMM PF06289
YP_001391955.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429
YP_001391956.1	identified by match to protein family HMM TIGR02530
YP_001391957.1	identified by match to protein family HMM PF03963
YP_001391958.1	identified by match to protein family HMM PF02120
YP_001391959.1	identified by match to protein family HMM TIGR02473
YP_001391960.1	identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_001391962.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001391963.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_001391964.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001391965.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001391966.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001391968.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001391969.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001391972.1	identified by match to protein family HMM PF00614
YP_001391975.1	identified by match to protein family HMM PF04892
YP_001391976.1	identified by match to protein family HMM PF01943
YP_001391977.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001391978.1	identified by match to protein family HMM PF03102; match to protein family HMM PF08666
YP_001391979.1	identified by match to protein family HMM PF02348; match to protein family HMM PF04101
YP_001391981.1	identified by match to protein family HMM PF05855
YP_001391983.1	identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031
YP_001391984.1	identified by match to protein family HMM PF02397
YP_001391985.1	identified by match to protein family HMM TIGR01007
YP_001391986.1	identified by match to protein family HMM PF02811
YP_001391987.1	identified by match to protein family HMM PF02706
YP_001391988.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_001391990.1	identified by Glimmer3
YP_001391992.1	identified by match to protein family HMM PF00015
YP_001391993.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001391994.1	identified by similarity to GB:AAO36231.1
YP_001391995.1	identified by Glimmer3
YP_001391996.1	identified by Glimmer3
YP_001391997.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212
YP_001391998.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001391999.1	identified by match to protein family HMM PF00132
YP_001392000.1	identified by match to protein family HMM PF02585
YP_001392001.1	identified by similarity to SP:P0A0Z8; match to protein family HMM PF02348
YP_001392002.1	identified by similarity to GB:ABM40074.1; match to protein family HMM PF02655
YP_001392003.1	identified by match to protein family HMM PF03102; match to protein family HMM PF08666
YP_001392004.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001392005.1	identified by match to protein family HMM PF02350
YP_001392006.1	identified by match to protein family HMM PF00483; match to protein family HMM PF00571
YP_001392007.1	identified by similarity to GB:ABK62152.1
YP_001392008.1	identified by similarity to GB:AAK80159.1; match to protein family HMM PF01973
YP_001392009.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001392011.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195
YP_001392012.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_001392014.1	identified by match to protein family HMM PF03646
YP_001392015.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_001392016.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001392017.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM TIGR02550
YP_001392018.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492
YP_001392019.1	identified by match to protein family HMM PF05130
YP_001392020.1	identified by match to protein family HMM PF04316
YP_001392021.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001392022.1	identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397
YP_001392023.1	identified by match to protein family HMM PF01584
YP_001392024.1	identified by match to protein family HMM PF00072
YP_001392025.1	identified by match to protein family HMM PF04509
YP_001392026.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194
YP_001392027.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_001392028.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01339
YP_001392029.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001392030.1	identified by match to protein family HMM PF01584
YP_001392031.1	identified by match to protein family HMM PF03961
YP_001392032.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830
YP_001392033.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001392034.1	identified by match to protein family HMM PF01063
YP_001392035.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001392037.1	identified by Glimmer3
YP_001392038.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176
YP_001392039.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001392040.1	identified by Glimmer3
YP_001392041.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001392042.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_001392043.1	identified by match to protein family HMM PF01261
YP_001392044.1	identified by match to protein family HMM PF01436
YP_001392045.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001392047.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383
YP_001392048.1	identified by match to protein family HMM PF04309
YP_001392049.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001392050.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001392052.1	identified by match to protein family HMM PF00999
YP_001392054.1	identified by Glimmer3
YP_001392055.1	identified by match to protein family HMM PF01522
YP_001392056.1	identified by Glimmer3
YP_001392057.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_001392058.1	identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753
YP_001392059.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001392060.1	identified by match to protein family HMM PF00165; match to protein family HMM PF07883
YP_001392061.1	identified by match to protein family HMM PF02016
YP_001392062.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311
YP_001392063.1	identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_001392064.1	identified by match to protein family HMM PF01906
YP_001392065.1	identified by match to protein family HMM PF04892
YP_001392067.1	identified by match to protein family HMM PF00005
YP_001392068.1	identified by match to protein family HMM PF00392
YP_001392069.1	identified by match to protein family HMM PF04892
YP_001392070.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001392072.1	identified by match to protein family HMM PF02073
YP_001392073.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001392074.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001392075.1	identified by match to protein family HMM PF03323
YP_001392076.1	identified by Glimmer3
YP_001392077.1	identified by Glimmer3
YP_001392078.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_001392079.1	identified by match to protein family HMM PF01522
YP_001392080.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_001392082.1	identified by Glimmer3
YP_001392083.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001392084.1	identified by match to protein family HMM PF00582
YP_001392085.1	identified by match to protein family HMM PF00037
YP_001392086.1	catalyzes the formation of glutamate from glutamine
YP_001392087.1	identified by match to protein family HMM PF06725
YP_001392089.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001392091.1	identified by match to protein family HMM PF00268
YP_001392092.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001392095.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001392096.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_001392097.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001392098.1	identified by match to protein family HMM PF00156
YP_001392099.1	identified by match to protein family HMM PF02698
YP_001392100.1	identified by similarity to GB:AAO35228.1
YP_001392101.1	identified by match to protein family HMM PF01047
YP_001392102.1	identified by match to protein family HMM PF00005
YP_001392104.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_001392105.1	identified by Glimmer3
YP_001392106.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001392107.1	identified by match to protein family HMM PF00293
YP_001392108.1	identified by match to protein family HMM PF01475
YP_001392109.1	identified by Glimmer3
YP_001392110.1	identified by match to protein family HMM PF00704
YP_001392111.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_001392112.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221
YP_001392113.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001392114.1	identified by Glimmer3
YP_001392115.1	identified by Glimmer3
YP_001392116.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001392117.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001392118.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_001392119.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001392120.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797
YP_001392121.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001392122.1	identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001392123.1	identified by match to protein family HMM PF00665
YP_001392124.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001392125.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001392127.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001392128.1	identified by match to protein family HMM PF00941
YP_001392129.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_001392130.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995
YP_001392131.1	identified by match to protein family HMM PF00232
YP_001392132.1	identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001392133.1	identified by match to protein family HMM PF00999
YP_001392134.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001392135.1	identified by match to protein family HMM PF01510
YP_001392136.1	identified by Glimmer3
YP_001392137.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_001392138.1	identified by match to protein family HMM PF00005
YP_001392140.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_001392141.1	identified by Glimmer3
YP_001392142.1	identified by match to protein family HMM PF00884
YP_001392143.1	identified by match to protein family HMM PF01925
YP_001392144.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001392145.1	identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506
YP_001392146.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001392147.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_001392148.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001392149.1	identified by match to protein family HMM PF00753
YP_001392150.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_001392152.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001392153.1	identified by match to protein family HMM PF03323
YP_001392154.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001392155.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001392156.1	involved in de novo purine biosynthesis
YP_001392157.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_001392158.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001392159.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001392160.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001392161.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_001392162.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311
YP_001392163.1	Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases
YP_001392164.1	in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS
YP_001392165.1	with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase
YP_001392166.1	identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316
YP_001392167.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_001392168.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001392169.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_001392170.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001392171.1	identified by match to protein family HMM TIGR03172
YP_001392172.1	identified by match to protein family HMM TIGR03310
YP_001392173.1	identified by match to protein family HMM TIGR03309
YP_001392174.1	identified by match to protein family HMM PF02625
YP_001392176.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_001392177.1	identified by match to protein family HMM PF00005
YP_001392178.1	identified by match to protein family HMM PF01497
YP_001392179.1	identified by Glimmer3
YP_001392180.1	identified by match to protein family HMM PF00657
YP_001392181.1	identified by match to protein family HMM PF02698
YP_001392182.1	identified by match to protein family HMM PF00860
YP_001392183.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001392185.1	identified by similarity to SP:P14941; match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001392186.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02954
YP_001392187.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001392188.1	identified by match to protein family HMM PF01546
YP_001392190.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001392191.1	identified by match to protein family HMM PF01910
YP_001392192.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001392193.1	identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134
YP_001392194.1	identified by match to protein family HMM PF04456
YP_001392197.1	identified by match to protein family HMM PF00005
YP_001392198.1	identified by match to protein family HMM PF00392
YP_001392200.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_001392201.1	identified by match to protein family HMM PF00037
YP_001392202.1	identified by match to protein family HMM PF00027
YP_001392203.1	identified by match to protein family HMM PF07486
YP_001392205.1	identified by match to protein family HMM PF07883
YP_001392206.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001392207.1	identified by match to protein family HMM PF03009
YP_001392209.1	identified by match to protein family HMM PF00282
YP_001392210.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001392211.1	identified by match to protein family HMM PF02591
YP_001392212.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_001392213.1	identified by match to protein family HMM PF04816
YP_001392215.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_001392216.1	synthesizes RNA primers at the replication forks
YP_001392217.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001392218.1	identified by match to protein family HMM TIGR02906
YP_001392219.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001392220.1	identified by match to protein family HMM PF00571; match to protein family HMM PF08279
YP_001392221.1	identified by match to protein family HMM PF00627
YP_001392222.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001392223.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_001392224.1	identified by match to protein family HMM PF01219; match to protein family HMM PF01569
YP_001392225.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_001392226.1	identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277
YP_001392227.1	identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876
YP_001392228.1	identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856
YP_001392229.1	identified by match to protein family HMM PF02637
YP_001392230.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001392231.1	identified by match to protein family HMM PF01230
YP_001392232.1	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_001392233.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001392234.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001392235.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001392236.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001392237.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001392238.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001392239.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001392240.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001392242.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_001392243.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_001392244.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001392245.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001392246.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_001392248.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690
YP_001392249.1	identified by match to protein family HMM PF07556
YP_001392250.1	identified by Glimmer3
YP_001392251.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475
YP_001392252.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001392254.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_001392255.1	identified by match to protein family HMM PF00768
YP_001392256.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_001392257.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_001392258.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_001392259.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488
YP_001392260.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_001392261.1	identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_001392262.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001392263.1	involved in the peptidyltransferase reaction during translation
YP_001392264.1	identified by match to protein family HMM PF04327
YP_001392265.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_001392266.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001392268.1	identified by match to protein family HMM PF04055
YP_001392269.1	identified by match to protein family HMM PF02163
YP_001392270.1	identified by match to protein family HMM PF01551
YP_001392271.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_001392272.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001392273.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_001392274.1	blocks the formation of polar Z-ring septums
YP_001392275.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001392276.1	identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426
YP_001392277.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001392278.1	functions in MreBCD complex in some organisms
YP_001392279.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001392280.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001392284.1	identified by match to protein family HMM PF02567
YP_001392285.1	identified by match to protein family HMM PF01842
YP_001392286.1	identified by Glimmer3
YP_001392287.1	identified by match to protein family HMM PF01464
YP_001392288.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001392289.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001392290.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001392291.1	identified by match to protein family HMM PF01520; match to protein family HMM PF08239
YP_001392295.1	identified by match to protein family HMM PF00754
YP_001392297.1	identified by Glimmer3
YP_001392300.1	identified by Glimmer3
YP_001392304.1	identified by match to protein family HMM PF00656
YP_001392307.1	identified by Glimmer3
YP_001392309.1	identified by Glimmer3
YP_001392315.1	identified by Glimmer3
YP_001392319.1	identified by match to protein family HMM TIGR01714
YP_001392321.1	identified by match to protein family HMM PF01381
YP_001392322.1	identified by match to protein family HMM PF01381
YP_001392323.1	identified by Glimmer3
YP_001392324.1	identified by match to protein family HMM PF03062
YP_001392325.1	identified by Glimmer3
YP_001392326.1	identified by match to protein family HMM PF00269
YP_001392327.1	identified by Glimmer3
YP_001392328.1	identified by Glimmer3
YP_001392329.1	identified by Glimmer3
YP_001392330.1	identified by Glimmer3
YP_001392331.1	identified by match to protein family HMM PF04246
YP_001392332.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001392333.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001392334.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001392335.1	identified by match to protein family HMM PF00753
YP_001392336.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001392337.1	identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001392338.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001392339.1	identified by match to protein family HMM PF01368
YP_001392340.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001392341.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001392342.1	identified by match to protein family HMM PF04055
YP_001392343.1	identified by Glimmer3
YP_001392345.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001392346.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001392347.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001392348.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001392349.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001392351.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_001392352.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257
YP_001392353.1	identified by match to protein family HMM PF03130
YP_001392354.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001392355.1	identified by match to protein family HMM PF01909
YP_001392357.1	identified by match to protein family HMM PF00301
YP_001392358.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156
YP_001392359.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_001392360.1	identified by match to protein family HMM TIGR02832
YP_001392361.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001392362.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_001392363.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_001392364.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_001392365.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_001392366.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_001392367.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886
YP_001392369.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884
YP_001392370.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_001392371.1	identified by match to protein family HMM PF02397
YP_001392372.1	identified by match to protein family HMM PF01943
YP_001392373.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_001392374.1	identified by match to protein family HMM PF00534
YP_001392375.1	identified by match to protein family HMM PF00534
YP_001392376.1	identified by match to protein family HMM PF04932
YP_001392377.1	identified by match to protein family HMM PF00534
YP_001392378.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_001392379.1	identified by match to protein family HMM PF00534
YP_001392380.1	identified by Glimmer3
YP_001392382.1	identified by match to protein family HMM PF00560
YP_001392383.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943
YP_001392384.1	identified by match to protein family HMM PF00132
YP_001392385.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_001392386.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_001392387.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001392388.1	identified by match to protein family HMM PF01520; match to protein family HMM PF07495
YP_001392389.1	identified by match to protein family HMM PF01520; match to protein family HMM PF07495
YP_001392390.1	identified by match to protein family HMM PF01832; match to protein family HMM PF07495
YP_001392391.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001392392.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001392393.1	identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001392394.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001392395.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889
YP_001392396.1	identified by Glimmer3
YP_001392397.1	identified by match to protein family HMM PF01515
YP_001392398.1	identified by match to protein family HMM PF01070; match to protein family HMM PF01180
YP_001392399.1	identified by match to protein family HMM PF04463
YP_001392400.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_001392401.1	identified by match to protein family HMM PF01136
YP_001392403.1	identified by Glimmer3
YP_001392404.1	identified by Glimmer3
YP_001392405.1	identified by match to protein family HMM PF00535
YP_001392406.1	identified by match to protein family HMM PF05164
YP_001392407.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001392408.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001392409.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_001392410.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_001392411.1	identified by match to protein family HMM PF02386
YP_001392412.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001392413.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_001392414.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_001392415.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001392416.1	identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834
YP_001392419.1	identified by match to protein family HMM PF00005
YP_001392420.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001392421.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001392423.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001392424.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001392425.1	identified by match to protein family HMM PF00528
YP_001392426.1	identified by match to protein family HMM PF00528
YP_001392427.1	identified by match to protein family HMM PF00496
YP_001392428.1	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296
YP_001392429.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001392430.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001392431.1	identified by match to protein family HMM PF00155
YP_001392432.1	identified by match to protein family HMM PF00132; match to protein family HMM PF08503
YP_001392433.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001392435.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_001392439.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_001392440.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001392441.1	identified by match to protein family HMM PF00583
YP_001392442.1	identified by match to protein family HMM PF00082
YP_001392443.1	identified by Glimmer3
YP_001392444.1	identified by Glimmer3
YP_001392445.1	identified by similarity to GB:CAJ66982.1
YP_001392446.1	identified by match to protein family HMM PF04055
YP_001392447.1	identified by Glimmer3
YP_001392448.1	identified by match to protein family HMM PF00005
YP_001392449.1	identified by match to protein family HMM PF00005
YP_001392450.1	identified by match to protein family HMM PF02687
YP_001392452.1	identified by Glimmer3
YP_001392453.1	identified by match to protein family HMM PF01381
YP_001392454.1	identified by match to protein family HMM PF01381
YP_001392455.1	identified by match to protein family HMM PF01336
YP_001392456.1	identified by Glimmer3
YP_001392457.1	identified by match to protein family HMM PF01076
YP_001392458.1	identified by match to protein family HMM PF02534
YP_001392459.1	identified by match to protein family HMM PF01381
YP_001392460.1	identified by similarity to SP:P07945; match to protein family HMM PF00239
YP_001392461.1	identified by Glimmer3
YP_001392462.1	identified by similarity to GB:CAC97788.1
YP_001392463.1	identified by Glimmer3
YP_001392464.1	identified by match to protein family HMM PF01510; match to protein family HMM PF08239
YP_001392465.1	identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593
YP_001392466.1	identified by Glimmer3
YP_001392467.1	identified by Glimmer3
YP_001392468.1	identified by similarity to GB:AAB18720.1
YP_001392469.1	identified by similarity to GB:BAD74827.1
YP_001392471.1	identified by match to protein family HMM TIGR01760
YP_001392472.1	identified by Glimmer3
YP_001392473.1	identified by similarity to GB:AAU40458.1
YP_001392474.1	identified by match to protein family HMM TIGR01603
YP_001392475.1	identified by similarity to GB:AAU40455.1
YP_001392476.1	identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725
YP_001392477.1	identified by match to protein family HMM PF06264; match to protein family HMM TIGR01563
YP_001392478.1	identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560
YP_001392479.1	identified by similarity to SP:P38527
YP_001392481.1	identified by match to protein family HMM PF00574
YP_001392482.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_001392483.1	identified by match to protein family HMM PF03354
YP_001392484.1	identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558
YP_001392485.1	identified by similarity to GB:ABG87918.1
YP_001392487.1	identified by Glimmer3
YP_001392488.1	identified by similarity to GB:ABG87933.1
YP_001392489.1	identified by match to protein family HMM PF00589
YP_001392490.1	identified by similarity to GB:AAK79876.1
YP_001392491.1	identified by Glimmer3
YP_001392492.1	identified by Glimmer3
YP_001392493.1	identified by Glimmer3
YP_001392494.1	identified by Glimmer3
YP_001392495.1	identified by similarity to GB:AAO34980.1
YP_001392496.1	identified by Glimmer3
YP_001392497.1	identified by Glimmer3
YP_001392498.1	identified by Glimmer3
YP_001392499.1	identified by similarity to RF:XP_675694.1
YP_001392500.1	identified by Glimmer3
YP_001392501.1	identified by Glimmer3
YP_001392502.1	identified by similarity to GB:CAD47030.1
YP_001392503.1	identified by similarity to GB:AAO81857.1
YP_001392504.1	identified by Glimmer3
YP_001392505.1	identified by similarity to GB:AAM25375.1
YP_001392506.1	identified by Glimmer3
YP_001392507.1	identified by Glimmer3
YP_001392508.1	identified by match to protein family HMM TIGR01714
YP_001392509.1	identified by similarity to GB:AAL96799.1
YP_001392510.1	identified by similarity to GB:ABK61203.1
YP_001392511.1	identified by similarity to GB:AAY35173.1
YP_001392512.1	identified by Glimmer3
YP_001392513.1	identified by similarity to RF:YP_459996.1
YP_001392514.1	identified by Glimmer3
YP_001392515.1	identified by Glimmer3
YP_001392516.1	identified by match to protein family HMM PF01381
YP_001392517.1	identified by similarity to SP:P96631; match to protein family HMM PF01381
YP_001392518.1	identified by Glimmer3
YP_001392519.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_001392521.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001392522.1	identified by match to protein family HMM PF00005
YP_001392523.1	identified by match to protein family HMM PF00528
YP_001392524.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720
YP_001392525.1	identified by match to protein family HMM PF01841
YP_001392526.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001392527.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001392528.1	identified by match to protein family HMM PF06177
YP_001392529.1	identified by match to protein family HMM PF01613
YP_001392530.1	identified by match to protein family HMM PF01471; match to protein family HMM PF03734
YP_001392532.1	identified by match to protein family HMM PF06865
YP_001392533.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001392534.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901
YP_001392535.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494
YP_001392536.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001392537.1	identified by match to protein family HMM PF00533
YP_001392538.1	identified by Glimmer3
YP_001392539.1	identified by match to protein family HMM PF00092
YP_001392540.1	identified by match to protein family HMM PF07728
YP_001392543.1	identified by match to protein family HMM PF00037
YP_001392546.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001392547.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001392548.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001392549.1	identified by match to protein family HMM PF01012
YP_001392550.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001392551.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001392552.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001392553.1	identified by match to protein family HMM PF00378
YP_001392554.1	identified by Glimmer3
YP_001392555.1	identified by match to protein family HMM PF01541
YP_001392556.1	identified by match to protein family HMM PF00860
YP_001392557.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001392558.1	identified by Glimmer3
YP_001392559.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001392560.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001392562.1	identified by match to protein family HMM PF03009
YP_001392563.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001392564.1	identified by match to protein family HMM PF00301; match to protein family HMM PF02915
YP_001392565.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493
YP_001392566.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_001392568.1	identified by match to protein family HMM TIGR00731
YP_001392570.1	identified by match to protein family HMM PF01475
YP_001392571.1	identified by match to protein family HMM PF01547
YP_001392573.1	identified by match to protein family HMM PF08279
YP_001392575.1	identified by Glimmer3
YP_001392576.1	identified by Glimmer3
YP_001392577.1	identified by match to protein family HMM PF02517
YP_001392578.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001392579.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_001392580.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02902
YP_001392581.1	binds and unfolds substrates as part of the ClpXP protease
YP_001392582.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001392583.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001392584.1	identified by match to protein family HMM PF01261
YP_001392586.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001392587.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_001392588.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_001392589.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001392590.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857
YP_001392591.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_001392592.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001392593.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001392595.1	identified by match to protein family HMM PF06050
YP_001392596.1	identified by match to protein family HMM PF06050
YP_001392598.1	identified by match to protein family HMM PF00005
YP_001392599.1	identified by Glimmer3
YP_001392600.1	identified by Glimmer3
YP_001392604.1	identified by match to protein family HMM PF03773
YP_001392605.1	identified by Glimmer3
YP_001392606.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001392607.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001392609.1	identified by similarity to GB:AAM23887.1
YP_001392610.1	identified by match to protein family HMM PF00496
YP_001392611.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001392612.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001392613.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001392614.1	identified by match to protein family HMM PF00375
YP_001392616.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001392617.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_001392618.1	identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531
YP_001392619.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001392620.1	identified by match to protein family HMM PF01464
YP_001392621.1	identified by match to protein family HMM PF07495
YP_001392622.1	identified by Glimmer3
YP_001392623.1	identified by match to protein family HMM PF02639
YP_001392624.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001392626.1	identified by match to protein family HMM PF00440
YP_001392627.1	identified by match to protein family HMM PF00583
YP_001392628.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001392629.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001392631.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001392632.1	identified by match to protein family HMM PF01012
YP_001392633.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001392634.1	identified by match to protein family HMM PF06050
YP_001392635.1	identified by match to protein family HMM PF06050
YP_001392636.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001392637.1	identified by match to protein family HMM PF02515
YP_001392638.1	identified by match to protein family HMM PF00501
YP_001392639.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001392640.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001392641.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001392642.1	identified by match to protein family HMM PF01171
YP_001392643.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001392644.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001392645.1	identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906
YP_001392646.1	identified by match to protein family HMM PF09335
YP_001392647.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_001392648.1	identified by match to protein family HMM PF00730; match to protein family HMM PF07934
YP_001392649.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001392650.1	identified by match to protein family HMM PF00175
YP_001392651.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001392652.1	identified by match to protein family HMM PF00005
YP_001392653.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001392654.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694
YP_001392655.1	identified by match to protein family HMM PF02554
YP_001392656.1	identified by match to protein family HMM PF05193; match to protein family HMM PF08367
YP_001392657.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001392658.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001392659.1	identified by match to protein family HMM PF05866
YP_001392660.1	identified by Glimmer3
YP_001392661.1	identified by match to protein family HMM PF07992
YP_001392664.1	identified by match to protein family HMM PF01297
YP_001392665.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001392666.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_001392667.1	identified by match to protein family HMM PF00814
YP_001392668.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_001392669.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001392671.1	identified by match to protein family HMM PF04326
YP_001392673.1	identified by Glimmer3
YP_001392674.1	identified by match to protein family HMM PF01569
YP_001392675.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503
YP_001392676.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001392677.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001392678.1	identified by Glimmer3
YP_001392679.1	identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332
YP_001392681.1	identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205
YP_001392682.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_001392683.1	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657
YP_001392684.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001392685.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001392688.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001392689.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_001392690.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001392691.1	identified by match to protein family HMM PF01541
YP_001392693.1	identified by match to protein family HMM PF00005
YP_001392695.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001392696.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815
YP_001392697.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001392698.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001392700.1	identified by match to protein family HMM PF00005
YP_001392703.1	identified by match to protein family HMM PF05913
YP_001392704.1	identified by match to protein family HMM PF01869
YP_001392705.1	identified by match to protein family HMM PF02255
YP_001392706.1	identified by match to protein family HMM PF02302
YP_001392707.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728
YP_001392708.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_001392709.1	identified by match to protein family HMM PF02056
YP_001392710.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001392711.1	identified by match to protein family HMM PF00589
YP_001392712.1	identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330
YP_001392715.1	identified by match to protein family HMM PF01638
YP_001392716.1	identified by similarity to SP:Q9KIT1
YP_001392717.1	identified by match to protein family HMM PF05368
YP_001392718.1	identified by match to protein family HMM PF00248
YP_001392719.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001392720.1	identified by match to protein family HMM PF00376
YP_001392721.1	identified by match to protein family HMM PF04657
YP_001392722.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001392723.1	identified by match to protein family HMM PF00583
YP_001392724.1	identified by match to protein family HMM PF01170; match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_001392726.1	identified by Glimmer3
YP_001392727.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00248
YP_001392728.1	identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_001392729.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001392730.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001392731.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_001392732.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_001392733.1	identified by match to protein family HMM PF03668
YP_001392734.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001392735.1	identified by match to protein family HMM PF02811
YP_001392736.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001392737.1	identified by match to protein family HMM PF04307
YP_001392738.1	identified by match to protein family HMM PF01336; match to protein family HMM PF01966
YP_001392739.1	identified by match to protein family HMM PF00905
YP_001392740.1	identified by match to protein family HMM PF01098
YP_001392741.1	identified by match to protein family HMM PF00498
YP_001392742.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001392743.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001392745.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_001392746.1	identified by match to protein family HMM PF02687
YP_001392747.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673
YP_001392748.1	identified by match to protein family HMM PF02588
YP_001392749.1	identified by Glimmer3
YP_001392750.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001392751.1	identified by match to protein family HMM PF00456
YP_001392752.1	identified by match to protein family HMM PF02452
YP_001392754.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001392756.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_001392757.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556
YP_001392759.1	identified by match to protein family HMM PF03553
YP_001392760.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_001392762.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001392763.1	identified by match to protein family HMM PF00375
YP_001392765.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_001392766.1	identified by match to protein family HMM PF00923
YP_001392767.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001392768.1	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate
YP_001392769.1	identified by match to protein family HMM PF03829
YP_001392770.1	identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825
YP_001392771.1	identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821
YP_001392772.1	identified by match to protein family HMM PF06923
YP_001392773.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001392774.1	identified by match to protein family HMM PF04198
YP_001392775.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001392776.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_001392777.1	identified by match to protein family HMM PF00037
YP_001392779.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001392780.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_001392781.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001392783.1	identified by match to protein family HMM PF07949
YP_001392784.1	identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_001392785.1	identified by match to protein family HMM PF07486
YP_001392786.1	identified by match to protein family HMM PF01134; match to protein family HMM PF07992
YP_001392787.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_001392788.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975
YP_001392789.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001392791.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_001392792.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001392793.1	identified by match to protein family HMM PF00515
YP_001392794.1	identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723
YP_001392795.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_001392796.1	identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883
YP_001392797.1	identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_001392798.1	forms a direct contact with the tRNA during translation
YP_001392799.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001392800.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001392801.1	identified by match to protein family HMM PF02361
YP_001392802.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_001392803.1	with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene
YP_001392804.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001392805.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001392806.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001392807.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001392808.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001392809.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001392810.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001392812.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_001392813.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001392814.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001392815.1	late assembly protein
YP_001392816.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001392817.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001392818.1	binds 5S rRNA along with protein L5 and L25
YP_001392819.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001392820.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001392821.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001392822.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001392823.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001392824.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001392825.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001392826.1	one of the stabilizing components for the large ribosomal subunit
YP_001392827.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001392828.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001392829.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001392830.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001392831.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001392832.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001392833.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001392834.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001392835.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001392836.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001392837.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001392838.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001392839.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001392840.1	identified by match to protein family HMM PF01248
YP_001392841.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001392842.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001392843.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001392844.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001392845.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001392846.1	binds directly to 23S ribosomal RNA
YP_001392847.1	Modulates Rho-dependent transcription termination
YP_001392848.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001392849.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001392850.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001392851.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001392852.1	identified by match to protein family HMM PF05991
YP_001392853.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_001392854.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_001392855.1	identified by match to protein family HMM PF00636
YP_001392856.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001392857.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127
YP_001392858.1	identified by match to protein family HMM PF03129; match to protein family HMM PF04073
YP_001392859.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001392860.1	identified by match to protein family HMM PF01850; match to protein family HMM PF01938
YP_001392862.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001392863.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001392864.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001392865.1	identified by match to protein family HMM PF00217
YP_001392866.1	identified by match to protein family HMM PF02151
YP_001392867.1	identified by match to protein family HMM PF05848
YP_001392869.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001392870.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001392871.1	identified by similarity to GB:AAY89025.1
YP_001392872.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001392873.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001392874.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001392876.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_001392877.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001392878.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001392879.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001392880.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_001392881.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_001392882.1	identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865
YP_001392883.1	identified by match to protein family HMM PF00575
YP_001392884.1	identified by match to protein family HMM PF04977
YP_001392885.1	identified by match to protein family HMM TIGR02893
YP_001392886.1	identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892
YP_001392887.1	identified by match to protein family HMM PF01479
YP_001392888.1	identified by match to protein family HMM PF00216
YP_001392889.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444
YP_001392890.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_001392891.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851
YP_001392892.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_001392893.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_001392894.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001392895.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_001392896.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001392897.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001392898.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001392899.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001392900.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_001392901.1	identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743
YP_001392902.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001392904.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_001392905.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001392907.1	catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate
YP_001392908.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_001392911.1	identified by match to protein family HMM PF04055
YP_001392912.1	identified by match to protein family HMM PF00015; match to protein family HMM PF07700
YP_001392913.1	identified by match to protein family HMM PF01381
YP_001392915.1	identified by match to protein family HMM PF00160
YP_001392916.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001392917.1	identified by match to protein family HMM PF00120
YP_001392919.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001392920.1	identified by match to protein family HMM PF00753
YP_001392922.1	identified by match to protein family HMM PF02810
YP_001392923.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001392924.1	identified by match to protein family HMM PF07690
YP_001392925.1	identified by match to protein family HMM PF03358
YP_001392926.1	identified by match to protein family HMM PF00440
YP_001392927.1	identified by match to protein family HMM PF00165
YP_001392928.1	identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500
YP_001392929.1	identified by match to protein family HMM PF00881
YP_001392930.1	identified by similarity to GB:CAB38127.2
YP_001392931.1	identified by similarity to GB:CAJ70140.1
YP_001392932.1	identified by match to protein family HMM PF09338
YP_001392933.1	identified by match to protein family HMM PF01512
YP_001392935.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055
YP_001392937.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_001392938.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001392939.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_001392940.1	identified by match to protein family HMM PF00474
YP_001392941.1	identified by match to protein family HMM PF00534
YP_001392942.1	identified by match to protein family HMM PF02811
YP_001392943.1	identified by match to protein family HMM PF08761
YP_001392944.1	identified by match to protein family HMM PF04657
YP_001392945.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001392946.1	identified by match to protein family HMM PF00082
YP_001392947.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001392948.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001392949.1	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513
YP_001392950.1	identified by match to protein family HMM TIGR00515
YP_001392951.1	identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514
YP_001392952.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001392953.1	identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531
YP_001392954.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001392955.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001392956.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001392957.1	identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151
YP_001392958.1	identified by match to protein family HMM PF00550
YP_001392959.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747
YP_001392960.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03965
YP_001392961.1	identified by match to protein family HMM PF03060
YP_001392962.1	identified by match to protein family HMM PF01551
YP_001392963.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_001392964.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_001392967.1	identified by match to protein family HMM PF03618
YP_001392968.1	identified by match to protein family HMM PF02629
YP_001392969.1	identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275
YP_001392970.1	identified by match to protein family HMM PF01643
YP_001392972.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001392974.1	identified by Glimmer3
YP_001392975.1	identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001392976.1	unwinds double stranded DNA
YP_001392977.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903
YP_001392978.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001392979.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_001392982.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001392983.1	identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_001392984.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001392985.1	identified by match to protein family HMM PF06050
YP_001392986.1	identified by match to protein family HMM PF06107
YP_001392987.1	identified by match to protein family HMM PF00924
YP_001392989.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977
YP_001392990.1	identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872
YP_001392991.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_001392992.1	identified by Glimmer3
YP_001392994.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001392995.1	identified by match to protein family HMM PF01656
YP_001392996.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001392997.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001392998.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001392999.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001393000.1	identified by match to protein family HMM PF01424
YP_001393001.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001393002.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_001393003.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_001393004.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_001393005.1	identified by Glimmer3; putative
YP_001393006.1	identified by Glimmer3; putative
YP_001393007.1	identified by Glimmer3; putative
YP_001393008.1	identified by Glimmer3; putative
YP_001393009.1	identified by Glimmer3; putative
YP_001393010.1	identified by Glimmer3; putative
YP_001393011.1	identified by Glimmer3; putative
YP_001393012.1	identified by match to protein family HMM PF01381
YP_001393013.1	identified by match to protein family HMM PF00589
YP_001393014.1	identified by Glimmer3; putative
YP_001393015.1	identified by match to protein family HMM PF02517
YP_001393016.1	identified by match to protein family HMM PF01051
YP_001393017.1	identified by Glimmer3; putative
YP_001393018.1	identified by match to protein family HMM TIGR02937
YP_001393019.1	identified by match to protein family HMM PF00300
YP_001393020.1	identified by similarity to GB:AAK76916.1
YP_001393023.1	identified by similarity to GB:CAH05747.1
YP_001393026.1	identified by Glimmer3; putative
YP_001393028.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193