-- dump date 20140619_044735 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_876974.1 118444385 4541247 335..469 1 NC_008593.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 469 rpmH 4541247 rpmH Clostridium novyi NT 50S ribosomal protein L34 YP_876974.1 335 D 386415 CDS YP_876975.1 118443844 4540858 527..868 1 NC_008593.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 868 rnpA 4540858 rnpA Clostridium novyi NT ribonuclease P YP_876975.1 527 D 386415 CDS YP_876976.1 118443513 4541822 868..1080 1 NC_008593.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1080 4541822 NT01CX_0870 Clostridium novyi NT hypothetical protein YP_876976.1 868 D 386415 CDS YP_876977.1 118442981 4541079 1099..1839 1 NC_008593.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1839 4541079 NT01CX_0871 Clostridium novyi NT inner membrane protein translocase component YidC YP_876977.1 1099 D 386415 CDS YP_876978.1 118444639 4539776 1903..2532 1 NC_008593.1 identified by match to protein family HMM PF01424; R3H domain-containing protein 2532 4539776 NT01CX_0872 Clostridium novyi NT R3H domain-containing protein YP_876978.1 1903 D 386415 CDS YP_876979.1 118444248 4541540 2594..3973 1 NC_008593.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3973 trmE 4541540 trmE Clostridium novyi NT tRNA modification GTPase TrmE YP_876979.1 2594 D 386415 CDS YP_876980.1 118443722 4540508 3986..5884 1 NC_008593.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5884 gidA 4540508 gidA Clostridium novyi NT tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_876980.1 3986 D 386415 CDS YP_876981.1 118444066 4541197 5885..6616 1 NC_008593.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 6616 gidB 4541197 gidB Clostridium novyi NT 16S rRNA methyltransferase GidB YP_876981.1 5885 D 386415 CDS YP_876982.1 118443812 4540814 6709..7488 1 NC_008593.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; spoOJ protein 7488 4540814 NT01CX_0876 Clostridium novyi NT spoOJ protein YP_876982.1 6709 D 386415 CDS YP_876983.1 118443230 4539641 7694..8479 1 NC_008593.1 identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj 8479 4539641 NT01CX_0877 Clostridium novyi NT sporulation initiation inhibitor protein soj YP_876983.1 7694 D 386415 CDS YP_876984.1 118443024 4539643 8472..9317 1 NC_008593.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 9317 4539643 NT01CX_0878 Clostridium novyi NT stage 0 sporulation protein J YP_876984.1 8472 D 386415 CDS YP_876985.1 118443471 4541905 9363..9869 1 NC_008593.1 hypothetical protein 9869 4541905 NT01CX_0879 Clostridium novyi NT hypothetical protein YP_876985.1 9363 D 386415 CDS YP_876986.1 118444149 4541233 complement(9911..10528) 1 NC_008593.1 identified by match to protein family HMM PF06866; hypothetical protein 10528 4541233 NT01CX_0880 Clostridium novyi NT hypothetical protein YP_876986.1 9911 R 386415 CDS YP_876987.1 118444555 4540394 complement(10616..11248) 1 NC_008593.1 identified by match to protein family HMM PF01810; LysE type translocator 11248 4540394 NT01CX_0881 Clostridium novyi NT LysE type translocator YP_876987.1 10616 R 386415 CDS YP_876988.1 118444134 4540983 11436..11651 1 NC_008593.1 identified by match to protein family HMM PF06107; hypothetical protein 11651 4540983 NT01CX_0882 Clostridium novyi NT hypothetical protein YP_876988.1 11436 D 386415 CDS YP_876989.1 118444568 4540113 11787..12074 1 NC_008593.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 12074 rpsF 4540113 rpsF Clostridium novyi NT 30S ribosomal protein S6 YP_876989.1 11787 D 386415 CDS YP_876990.1 118443896 4540437 12086..12532 1 NC_008593.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA binding protein 12532 4540437 NT01CX_0884 Clostridium novyi NT single-stranded DNA binding protein YP_876990.1 12086 D 386415 CDS YP_876991.1 118444188 4541318 12573..12809 1 NC_008593.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 12809 rpsR 4541318 rpsR Clostridium novyi NT 30S ribosomal protein S18 YP_876991.1 12573 D 386415 CDS YP_876992.1 118443030 4539648 12963..13274 1 NC_008593.1 hypothetical protein 13274 4539648 NT01CX_0886 Clostridium novyi NT hypothetical protein YP_876992.1 12963 D 386415 CDS YP_876993.1 118443356 4541832 13290..14291 1 NC_008593.1 hypothetical protein 14291 4541832 NT01CX_0887 Clostridium novyi NT hypothetical protein YP_876993.1 13290 D 386415 CDS YP_876994.1 118444184 4540849 14293..16278 1 NC_008593.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 16278 4540849 NT01CX_0888 Clostridium novyi NT DHH subfamily 1 protein YP_876994.1 14293 D 386415 CDS YP_876995.1 118444702 4540221 16280..16723 1 NC_008593.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 16723 rplI 4540221 rplI Clostridium novyi NT 50S ribosomal protein L9 YP_876995.1 16280 D 386415 CDS YP_876996.1 118443553 4539879 16899..18695 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF05362; ATP-dependent protease LA 18695 4539879 NT01CX_0890 Clostridium novyi NT ATP-dependent protease LA YP_876996.1 16899 D 386415 CDS YP_876997.1 118443592 4539971 18723..20057 1 NC_008593.1 unwinds double stranded DNA; replicative DNA helicase 20057 dnaB 4539971 dnaB Clostridium novyi NT replicative DNA helicase YP_876997.1 18723 D 386415 CDS YP_876998.1 118443885 4540427 complement(20094..20531) 1 NC_008593.1 identified by match to protein family HMM PF00011; small heat shock protein 20531 4540427 NT01CX_0892 Clostridium novyi NT small heat shock protein YP_876998.1 20094 R 386415 CDS YP_876999.1 118444302 4540791 21127..21984 1 NC_008593.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 21984 4540791 NT01CX_0894 Clostridium novyi NT degV family protein YP_876999.1 21127 D 386415 CDS YP_877000.1 118444706 4540225 22003..22839 1 NC_008593.1 identified by match to protein family HMM PF02645; DegV family protein 22839 4540225 NT01CX_0895 Clostridium novyi NT DegV family protein YP_877000.1 22003 D 386415 CDS YP_877001.1 118443218 4539635 23081..24370 1 NC_008593.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 24370 4539635 NT01CX_0896 Clostridium novyi NT homoserine dehydrogenase YP_877001.1 23081 D 386415 CDS YP_877002.1 118443625 4541855 24391..25881 1 NC_008593.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 25881 4541855 NT01CX_0897 Clostridium novyi NT threonine synthase YP_877002.1 24391 D 386415 CDS YP_877003.1 118444008 4540641 25981..26967 1 NC_008593.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein 26967 4540641 NT01CX_0898 Clostridium novyi NT birA bifunctional protein YP_877003.1 25981 D 386415 CDS YP_877004.1 118444249 4541541 26980..27192 1 NC_008593.1 hypothetical protein 27192 4541541 NT01CX_0899 Clostridium novyi NT hypothetical protein YP_877004.1 26980 D 386415 CDS YP_877005.1 118443835 4540851 27384..27620 1 NC_008593.1 hypothetical protein 27620 4540851 NT01CX_0900 Clostridium novyi NT hypothetical protein YP_877005.1 27384 D 386415 CDS YP_877006.1 118443392 4541291 complement(27764..29017) 1 NC_008593.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 29017 proA 4541291 proA Clostridium novyi NT gamma-glutamyl phosphate reductase YP_877006.1 27764 R 386415 CDS YP_877007.1 118442930 4539605 complement(29030..30169) 1 NC_008593.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 30169 proB 4539605 proB Clostridium novyi NT gamma-glutamyl kinase YP_877007.1 29030 R 386415 CDS YP_877008.1 118444610 4540108 30320..31126 1 NC_008593.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 31126 proC 4540108 proC Clostridium novyi NT pyrroline-5-carboxylate reductase YP_877008.1 30320 D 386415 CDS YP_877009.1 118444065 4541196 31463..32875 1 NC_008593.1 NAD(FAD)-utilizing dehydrogenase 32875 4541196 NT01CX_0904 Clostridium novyi NT NAD(FAD)-utilizing dehydrogenase YP_877009.1 31463 D 386415 CDS YP_877010.1 118444000 4540634 32963..34246 1 NC_008593.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 34246 purA 4540634 purA Clostridium novyi NT adenylosuccinate synthetase YP_877010.1 32963 D 386415 CDS YP_877011.1 118443561 4539885 34314..34505 1 NC_008593.1 hypothetical protein 34505 4539885 NT01CX_0906 Clostridium novyi NT hypothetical protein YP_877011.1 34314 D 386415 CDS YP_877012.1 118442902 4540908 34609..35361 1 NC_008593.1 identified by match to protein family HMM PF01643; acyl-acyl carrier protein thioesterase 35361 4540908 NT01CX_0907 Clostridium novyi NT acyl-acyl carrier protein thioesterase YP_877012.1 34609 D 386415 CDS YP_877013.1 118443206 4539625 complement(35456..36700) 1 NC_008593.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 36700 4539625 NT01CX_0908 Clostridium novyi NT hypothetical protein YP_877013.1 35456 R 386415 CDS YP_877014.1 118444581 4540124 complement(37946..38938) 1 NC_008593.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 38938 4540124 NT01CX_0917 Clostridium novyi NT DNA replication protein DnaC YP_877014.1 37946 R 386415 CDS YP_877015.1 118444142 4541226 complement(38931..39923) 1 NC_008593.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 39923 4541226 NT01CX_0918 Clostridium novyi NT DNA replication protein DnaD YP_877015.1 38931 R 386415 CDS YP_877016.1 118443542 4541940 40078..41808 1 NC_008593.1 hypothetical protein 41808 4541940 NT01CX_0919 Clostridium novyi NT hypothetical protein YP_877016.1 40078 D 386415 CDS YP_877017.1 118443025 4539644 42030..42500 1 NC_008593.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 42500 4539644 NT01CX_0920 Clostridium novyi NT MarR family transcriptional regulator YP_877017.1 42030 D 386415 CDS YP_877018.1 118443447 4541887 42506..43480 1 NC_008593.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 43480 4541887 NT01CX_0921 Clostridium novyi NT 3-oxoacyl-ACP synthase YP_877018.1 42506 D 386415 CDS YP_877019.1 118442905 4540911 43514..43744 1 NC_008593.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 43744 acpP 4540911 acpP Clostridium novyi NT acyl carrier protein YP_877019.1 43514 D 386415 CDS YP_877020.1 118443289 4541912 43804..44754 1 NC_008593.1 identified by match to protein family HMM PF03060; enoyl-ACP reductase 44754 4541912 NT01CX_0923 Clostridium novyi NT enoyl-ACP reductase YP_877020.1 43804 D 386415 CDS YP_877021.1 118444515 4539931 44747..45691 1 NC_008593.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 45691 fabD 4539931 fabD Clostridium novyi NT malonyl CoA-acyl carrier protein transacylase YP_877021.1 44747 D 386415 CDS YP_877022.1 118444212 4539687 45691..46443 1 NC_008593.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 46443 fabG 4539687 fabG Clostridium novyi NT 3-ketoacyl-ACP reductase YP_877022.1 45691 D 386415 CDS YP_877023.1 118443407 4541718 46457..47698 1 NC_008593.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 47698 4541718 NT01CX_0926 Clostridium novyi NT 3-oxoacyl-(acyl carrier protein) synthase II YP_877023.1 46457 D 386415 CDS YP_877024.1 118443464 4541902 47702..48190 1 NC_008593.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 48190 accB 4541902 accB Clostridium novyi NT acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_877024.1 47702 D 386415 CDS YP_877025.1 118443054 4541778 48203..48631 1 NC_008593.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 48631 fabZ 4541778 fabZ Clostridium novyi NT (3R)-hydroxymyristoyl-ACP dehydratase YP_877025.1 48203 D 386415 CDS YP_877026.1 118444296 4539715 48640..49983 1 NC_008593.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; biotin carboxylase 49983 accC 4539715 accC Clostridium novyi NT biotin carboxylase YP_877026.1 48640 D 386415 CDS YP_877027.1 118443895 4540436 50029..50892 1 NC_008593.1 identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 50892 accD 4540436 accD Clostridium novyi NT acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_877027.1 50029 D 386415 CDS YP_877028.1 118444723 4541521 50916..51761 1 NC_008593.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 51761 accA 4541521 accA Clostridium novyi NT acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_877028.1 50916 D 386415 CDS YP_877029.1 118444146 4541230 51944..52786 1 NC_008593.1 identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 52786 4541230 NT01CX_0932 Clostridium novyi NT amino acid ABC transporter substrate-binding protein YP_877029.1 51944 D 386415 CDS YP_877030.1 118444342 4540565 52818..53516 1 NC_008593.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 53516 4540565 NT01CX_0933 Clostridium novyi NT amino acid ABC transporter permease YP_877030.1 52818 D 386415 CDS YP_877031.1 118443320 4540623 53509..54231 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter 54231 4540623 NT01CX_0934 Clostridium novyi NT ABC transporter YP_877031.1 53509 D 386415 CDS YP_877032.1 118443506 4541816 54455..55078 1 NC_008593.1 similar to YJCM B. subtilis; hypothetical protein 55078 4541816 NT01CX_0935 Clostridium novyi NT hypothetical protein YP_877032.1 54455 D 386415 CDS YP_877033.1 118443798 4541138 55356..57710 1 NC_008593.1 identified by match to protein family HMM PF06733; hypothetical protein 57710 4541138 NT01CX_0936 Clostridium novyi NT hypothetical protein YP_877033.1 55356 D 386415 CDS YP_877034.1 118443604 4539980 complement(57986..59140) 1 NC_008593.1 identified by match to protein family HMM PF00872; transposase mutator family protein 59140 4539980 NT01CX_0937 Clostridium novyi NT transposase mutator family protein YP_877034.1 57986 R 386415 CDS YP_877035.1 118443931 4540269 complement(59367..60806) 1 NC_008593.1 ISBma2, transposase 60806 4540269 NT01CX_0938 Clostridium novyi NT ISBma2, transposase YP_877035.1 59367 R 386415 CDS YP_877036.1 118444655 4539788 complement(60987..61307) 1 NC_008593.1 resolvase 61307 4539788 NT01CX_0939 Clostridium novyi NT resolvase YP_877036.1 60987 R 386415 CDS YP_877037.1 118443193 4541481 61794..62249 1 NC_008593.1 hypothetical protein 62249 4541481 NT01CX_0940 Clostridium novyi NT hypothetical protein YP_877037.1 61794 D 386415 CDS YP_877038.1 118443302 4541922 complement(63044..63796) 1 NC_008593.1 hypothetical protein 63796 4541922 NT01CX_0941 Clostridium novyi NT hypothetical protein YP_877038.1 63044 R 386415 CDS YP_877039.1 118443747 4541374 64054..65298 1 NC_008593.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 65298 cinA 4541374 cinA Clostridium novyi NT competence damage-inducible protein A YP_877039.1 64054 D 386415 CDS YP_877040.1 118444438 4540145 65481..66644 1 NC_008593.1 identified by match to protein family HMM PF00375; Sodium:dicarboxylate symporter family protein 66644 4540145 NT01CX_0943 Clostridium novyi NT Sodium:dicarboxylate symporter family protein YP_877040.1 65481 D 386415 CDS YP_877041.1 118444018 4540651 complement(66669..67871) 1 NC_008593.1 identified by match to protein family HMM PF00082; subtilase family protein 67871 4540651 NT01CX_0944 Clostridium novyi NT subtilase family protein YP_877041.1 66669 R 386415 CDS YP_877042.1 118443595 4539974 complement(67969..68415) 1 NC_008593.1 identified by match to protein family HMM PF04657; hypothetical protein 68415 4539974 NT01CX_0945 Clostridium novyi NT hypothetical protein YP_877042.1 67969 R 386415 CDS YP_877043.1 118443176 4540317 complement(68484..68969) 1 NC_008593.1 hypothetical protein 68969 4540317 NT01CX_0946 Clostridium novyi NT hypothetical protein YP_877043.1 68484 R 386415 CDS YP_877044.1 118443337 4539851 complement(69119..69667) 1 NC_008593.1 hypothetical protein 69667 4539851 NT01CX_0947 Clostridium novyi NT hypothetical protein YP_877044.1 69119 R 386415 CDS YP_877045.1 118443882 4540426 70069..71325 1 NC_008593.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 71325 murA 4540426 murA Clostridium novyi NT UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_877045.1 70069 D 386415 CDS YP_877046.1 118443215 4539632 71345..72133 1 NC_008593.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 72133 4539632 NT01CX_0949 Clostridium novyi NT metallo-beta-lactamase superfamily protein YP_877046.1 71345 D 386415 CDS YP_877047.1 118443765 4541040 72148..72714 1 NC_008593.1 lipoprotein 72714 4541040 NT01CX_0950 Clostridium novyi NT lipoprotein YP_877047.1 72148 D 386415 CDS YP_877048.1 118443016 4540590 72748..73251 1 NC_008593.1 Sec-fragment; identified by match to protein family HMM PF02810; hypothetical protein 73251 4540590 NT01CX_0951 Clostridium novyi NT hypothetical protein YP_877048.1 72748 D 386415 CDS YP_877049.1 118444357 4540445 73400..74263 1 NC_008593.1 identified by match to protein family HMM PF00072; chemotaxis response regulator 74263 4540445 NT01CX_0952 Clostridium novyi NT chemotaxis response regulator YP_877049.1 73400 D 386415 CDS YP_877050.1 118444405 4541207 74263..74742 1 NC_008593.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 74742 4541207 NT01CX_0953 Clostridium novyi NT rRNA large subunit methyltransferase YP_877050.1 74263 D 386415 CDS YP_877051.1 118443992 4540379 75009..76055 1 NC_008593.1 regulatory protein 76055 4540379 NT01CX_0954 Clostridium novyi NT regulatory protein YP_877051.1 75009 D 386415 CDS YP_877052.1 118444120 4540971 76088..77017 1 NC_008593.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 77017 panE 4540971 panE Clostridium novyi NT 2-dehydropantoate 2-reductase YP_877052.1 76088 D 386415 CDS YP_877053.1 118443720 4540506 77161..78324 1 NC_008593.1 identified by match to protein family HMM PF00376; HTH-type transcriptional activator tipA 78324 4540506 NT01CX_0956 Clostridium novyi NT HTH-type transcriptional activator tipA YP_877053.1 77161 D 386415 CDS YP_877054.1 118444677 4539676 78443..79405 1 NC_008593.1 hypothetical protein 79405 4539676 NT01CX_0957 Clostridium novyi NT hypothetical protein YP_877054.1 78443 D 386415 CDS YP_877055.1 118444270 4541648 79608..80348 1 NC_008593.1 identified by match to protein family HMM PF00132; maltose transacetylase 80348 4541648 NT01CX_0958 Clostridium novyi NT maltose transacetylase YP_877055.1 79608 D 386415 CDS YP_877056.1 118443339 4539853 80500..81420 1 NC_008593.1 identified by match to protein family HMM PF00892; integral membrane protein 81420 4539853 NT01CX_0959 Clostridium novyi NT integral membrane protein YP_877056.1 80500 D 386415 CDS YP_877057.1 118443004 4540581 complement(81487..82107) 1 NC_008593.1 hypothetical protein 82107 4540581 NT01CX_0960 Clostridium novyi NT hypothetical protein YP_877057.1 81487 R 386415 CDS YP_877058.1 118443560 4539884 82283..82957 1 NC_008593.1 identified by match to protein family HMM PF01381; transcriptional regulator 82957 4539884 NT01CX_0961 Clostridium novyi NT transcriptional regulator YP_877058.1 82283 D 386415 CDS YP_877059.1 118443149 4541701 83083..83424 1 NC_008593.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA 83424 phnA 4541701 phnA Clostridium novyi NT alkylphosphonate utilization operon protein PhnA YP_877059.1 83083 D 386415 CDS YP_877060.1 118443686 4541013 83701..84717 1 NC_008593.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 84717 4541013 NT01CX_0963 Clostridium novyi NT catabolite control protein A YP_877060.1 83701 D 386415 CDS YP_877061.1 118443270 4541062 84729..85829 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATPase 85829 4541062 NT01CX_0964 Clostridium novyi NT ABC transporter ATPase YP_877061.1 84729 D 386415 CDS YP_877062.1 118444556 4540395 85860..87203 1 NC_008593.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 87203 4540395 NT01CX_0965 Clostridium novyi NT ABC transporter substrate-binding protein YP_877062.1 85860 D 386415 CDS YP_877063.1 118444102 4540037 87257..88123 1 NC_008593.1 identified by match to protein family HMM PF00528; sugar ABC transporter permease 88123 4540037 NT01CX_0966 Clostridium novyi NT sugar ABC transporter permease YP_877063.1 87257 D 386415 CDS YP_877064.1 118443400 4541713 88123..88950 1 NC_008593.1 identified by match to protein family HMM PF00528; sugar ABC transporter permease 88950 4541713 NT01CX_0967 Clostridium novyi NT sugar ABC transporter permease YP_877064.1 88123 D 386415 CDS YP_877065.1 118443002 4540579 89062..91119 1 NC_008593.1 identified by match to protein family HMM PF01055; alpha-glucosidase 91119 4540579 NT01CX_0968 Clostridium novyi NT alpha-glucosidase YP_877065.1 89062 D 386415 CDS YP_877066.1 118444261 4541639 91138..92616 1 NC_008593.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 92616 malQ 4541639 malQ Clostridium novyi NT 4-alpha-glucanotransferase YP_877066.1 91138 D 386415 CDS YP_877067.1 118443848 4540862 92624..94999 1 NC_008593.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 94999 4540862 NT01CX_0970 Clostridium novyi NT glycogen phosphorylase YP_877067.1 92624 D 386415 CDS YP_877068.1 118443187 4541475 complement(95085..96116) 1 NC_008593.1 ISBma2, transposase 96116 4541475 NT01CX_0971 Clostridium novyi NT ISBma2, transposase YP_877068.1 95085 R 386415 CDS YP_877069.1 118444661 4539794 complement(96203..96523) 1 NC_008593.1 ISBma2, transposase 96523 4539794 NT01CX_0972 Clostridium novyi NT ISBma2, transposase YP_877069.1 96203 R 386415 CDS YP_877070.1 118444097 4540032 complement(96696..97280) 1 NC_008593.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 97280 4540032 NT01CX_0973 Clostridium novyi NT ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_877070.1 96696 R 386415 CDS YP_877071.1 118444509 4539926 97625..98281 1 NC_008593.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite reductase [NAD(P)H], large subunit 98281 4539926 NT01CX_0974 Clostridium novyi NT nitrite reductase [NAD(P)H], large subunit YP_877071.1 97625 D 386415 CDS YP_877072.1 118443234 4540328 98457..98930 1 NC_008593.1 hypothetical protein 98930 4540328 NT01CX_0975 Clostridium novyi NT hypothetical protein YP_877072.1 98457 D 386415 CDS YP_877073.1 118443679 4541007 98930..99628 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 99628 4541007 NT01CX_0976 Clostridium novyi NT transcriptional regulator YP_877073.1 98930 D 386415 CDS YP_877074.1 118443698 4540236 99648..101093 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 101093 4540236 NT01CX_0977 Clostridium novyi NT two-component sensor histidine kinase YP_877074.1 99648 D 386415 CDS YP_877075.1 118444220 4539692 101108..101944 1 NC_008593.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 101944 4539692 NT01CX_0978 Clostridium novyi NT CAAX amino terminal protease YP_877075.1 101108 D 386415 CDS YP_877076.1 118442888 4541971 102065..103261 1 NC_008593.1 identified by match to protein family HMM PF00882; match to protein family HMM PF01477; phospholipase C (PLC) (phosphatidylcholinecholinephosphohydrolase) (gamma-toxin) 103261 4541971 NT01CX_0979 Clostridium novyi NT phospholipase C (PLC) (phosphatidylcholinecholinephosphohydrolase) (gamma-toxin) YP_877076.1 102065 D 386415 CDS YP_877077.1 118443394 4541293 103404..104363 1 NC_008593.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 104363 4541293 NT01CX_0980 Clostridium novyi NT 2-hydroxyacid dehydrogenase YP_877077.1 103404 D 386415 CDS YP_877078.1 118443550 4539876 104364..104552 1 NC_008593.1 hypothetical protein 104552 4539876 NT01CX_0981 Clostridium novyi NT hypothetical protein YP_877078.1 104364 D 386415 CDS YP_877079.1 118443806 4541145 104600..105655 1 NC_008593.1 identified by match to protein family HMM PF05651; hypothetical protein 105655 4541145 NT01CX_0982 Clostridium novyi NT hypothetical protein YP_877079.1 104600 D 386415 CDS YP_877080.1 118443155 4541706 105755..107023 1 NC_008593.1 identified by match to protein family HMM PF02447; GntP family permease 107023 4541706 NT01CX_0983 Clostridium novyi NT GntP family permease YP_877080.1 105755 D 386415 CDS YP_877081.1 118443431 4541952 107129..108256 1 NC_008593.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 108256 4541952 NT01CX_0984 Clostridium novyi NT glycerate kinase YP_877081.1 107129 D 386415 CDS YP_877082.1 118443995 4540382 108432..110207 1 NC_008593.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; nitrogen fixation positive activator 110207 nifL 4540382 nifL Clostridium novyi NT nitrogen fixation positive activator YP_877082.1 108432 D 386415 CDS YP_877083.1 118443852 4540866 complement(110273..110845) 1 NC_008593.1 identified by match to protein family HMM PF05067; CotJC protein 110845 4540866 NT01CX_0986 Clostridium novyi NT CotJC protein YP_877083.1 110273 R 386415 CDS YP_877084.1 118444375 4540462 complement(110867..111145) 1 NC_008593.1 spore coat peptide assembly protein cotJB 111145 4540462 NT01CX_0987 Clostridium novyi NT spore coat peptide assembly protein cotJB YP_877084.1 110867 R 386415 CDS YP_877085.1 118443699 4540237 complement(111148..111372) 1 NC_008593.1 hypothetical protein 111372 4540237 NT01CX_0988 Clostridium novyi NT hypothetical protein YP_877085.1 111148 R 386415 CDS YP_877086.1 118444265 4541643 111527..113404 1 NC_008593.1 hypothetical protein 113404 4541643 NT01CX_0989 Clostridium novyi NT hypothetical protein YP_877086.1 111527 D 386415 CDS YP_877087.1 118443721 4540507 113416..114630 1 NC_008593.1 hypothetical protein 114630 4540507 NT01CX_0990 Clostridium novyi NT hypothetical protein YP_877087.1 113416 D 386415 CDS YP_877088.1 118443314 4540617 114634..115206 1 NC_008593.1 hypothetical protein 115206 4540617 NT01CX_0991 Clostridium novyi NT hypothetical protein YP_877088.1 114634 D 386415 CDS YP_877089.1 118444006 4540639 complement(115276..115518) 1 NC_008593.1 hypothetical protein 115518 4540639 NT01CX_0992 Clostridium novyi NT hypothetical protein YP_877089.1 115276 R 386415 CDS YP_877090.1 118443253 4540339 115658..115885 1 NC_008593.1 identified by match to protein family HMM PF01381; transcriptional regulator 115885 4540339 NT01CX_0993 Clostridium novyi NT transcriptional regulator YP_877090.1 115658 D 386415 CDS YP_877091.1 118443440 4541959 116140..116502 1 NC_008593.1 hypothetical protein 116502 4541959 NT01CX_0994 Clostridium novyi NT hypothetical protein YP_877091.1 116140 D 386415 CDS YP_877092.1 118443984 4540373 116556..116927 1 NC_008593.1 hypothetical protein 116927 4540373 NT01CX_0995 Clostridium novyi NT hypothetical protein YP_877092.1 116556 D 386415 CDS YP_877093.1 118444072 4539932 117064..117393 1 NC_008593.1 hypothetical protein 117393 4539932 NT01CX_0996 Clostridium novyi NT hypothetical protein YP_877093.1 117064 D 386415 CDS YP_877094.1 118444591 4540093 117605..119191 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase 119191 4540093 NT01CX_0997 Clostridium novyi NT ATP-dependent RNA helicase YP_877094.1 117605 D 386415 CDS YP_877095.1 118443120 4541735 complement(119245..119592) 1 NC_008593.1 HD-GYP hydrolase domain-containing protein 119592 4541735 NT01CX_0998 Clostridium novyi NT HD-GYP hydrolase domain-containing protein YP_877095.1 119245 R 386415 CDS YP_877096.1 118443707 4540244 complement(119631..120317) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD-GYP hydrolase domain-containing protein 120317 4540244 NT01CX_0999 Clostridium novyi NT HD-GYP hydrolase domain-containing protein YP_877096.1 119631 R 386415 CDS YP_877097.1 118443264 4541058 120602..122401 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700; methyl-accepting chemotaxis protein 122401 4541058 NT01CX_1000 Clostridium novyi NT methyl-accepting chemotaxis protein YP_877097.1 120602 D 386415 CDS YP_877098.1 118443701 4540239 complement(122425..123324) 1 NC_008593.1 similar to PflX (pyruvate formate lyase activating protein); identified by match to protein family HMM PF04055; Fe-S protein 123324 4540239 NT01CX_1001 Clostridium novyi NT Fe-S protein YP_877098.1 122425 R 386415 CDS YP_877099.1 118443877 4541691 complement(123363..124412) 1 NC_008593.1 hypothetical protein 124412 4541691 NT01CX_1002 Clostridium novyi NT hypothetical protein YP_877099.1 123363 R 386415 CDS YP_877100.1 118443393 4541292 124539..125618 1 NC_008593.1 hypothetical protein 125618 4541292 NT01CX_1003 Clostridium novyi NT hypothetical protein YP_877100.1 124539 D 386415 CDS YP_877101.1 118444247 4541539 125706..126632 1 NC_008593.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein 126632 4541539 NT01CX_1004 Clostridium novyi NT radical SAM protein YP_877101.1 125706 D 386415 CDS YP_877102.1 118444558 4540397 complement(126682..127338) 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 127338 4540397 NT01CX_1005 Clostridium novyi NT HAD family hydrolase YP_877102.1 126682 R 386415 CDS YP_877103.1 118442897 4541979 complement(127416..128762) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; hydrogenase 128762 4541979 NT01CX_1006 Clostridium novyi NT hydrogenase YP_877103.1 127416 R 386415 CDS YP_877104.1 118443385 4541285 complement(129134..129448) 1 NC_008593.1 hypothetical protein 129448 4541285 NT01CX_1008 Clostridium novyi NT hypothetical protein YP_877104.1 129134 R 386415 CDS YP_877105.1 118444177 4540842 129665..130435 1 NC_008593.1 identified by match to protein family HMM PF00005; zinc ABC transporter ATP-binding protein 130435 4540842 NT01CX_1009 Clostridium novyi NT zinc ABC transporter ATP-binding protein YP_877105.1 129665 D 386415 CDS YP_877106.1 118444695 4540215 130428..131255 1 NC_008593.1 identified by match to protein family HMM PF00950; zinc ABC transporter permease 131255 4540215 NT01CX_1010 Clostridium novyi NT zinc ABC transporter permease YP_877106.1 130428 D 386415 CDS YP_877107.1 118444708 4540226 complement(131278..132654) 1 NC_008593.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 132654 murC 4540226 murC Clostridium novyi NT UDP-N-acetylmuramate--L-alanine ligase YP_877107.1 131278 R 386415 CDS YP_877108.1 118443410 4541721 132926..133744 1 NC_008593.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 133744 purR 4541721 purR Clostridium novyi NT pur operon repressor YP_877108.1 132926 D 386415 CDS YP_877109.1 118443837 4540853 133822..134124 1 NC_008593.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 134124 4540853 NT01CX_1013 Clostridium novyi NT regulatory protein SpoVG YP_877109.1 133822 D 386415 CDS YP_877110.1 118444629 4539594 134332..135711 1 NC_008593.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 135711 glmU 4539594 glmU Clostridium novyi NT bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_877110.1 134332 D 386415 CDS YP_877111.1 118444224 4539695 135757..136713 1 NC_008593.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 136713 4539695 NT01CX_1015 Clostridium novyi NT ribose-phosphate pyrophosphokinase YP_877111.1 135757 D 386415 CDS YP_877112.1 118443576 4541874 136901..137587 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 137587 4541874 NT01CX_1016 Clostridium novyi NT transcriptional regulator YP_877112.1 136901 D 386415 CDS YP_877113.1 118443619 4541851 137588..139000 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory transduction histidine kinase 139000 4541851 NT01CX_1017 Clostridium novyi NT sensory transduction histidine kinase YP_877113.1 137588 D 386415 CDS YP_877114.1 118443092 4541752 139038..140183 1 NC_008593.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; periplasmic trypsin-like serine protease 140183 4541752 NT01CX_1018 Clostridium novyi NT periplasmic trypsin-like serine protease YP_877114.1 139038 D 386415 CDS YP_877115.1 118444703 4540222 140323..140889 1 NC_008593.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 140889 4540222 NT01CX_1019 Clostridium novyi NT peptidyl-tRNA hydrolase YP_877115.1 140323 D 386415 CDS YP_877116.1 118444361 4540448 140913..144425 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 144425 4540448 NT01CX_1020 Clostridium novyi NT transcription-repair coupling factor YP_877116.1 140913 D 386415 CDS YP_877117.1 118443543 4541941 144480..145526 1 NC_008593.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 145526 prsA 4541941 prsA Clostridium novyi NT peptidyl-prolyl isomerase YP_877117.1 144480 D 386415 CDS YP_877118.1 118442949 4539619 145937..146488 1 NC_008593.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; stage V sporulation protein T 146488 4539619 NT01CX_1022 Clostridium novyi NT stage V sporulation protein T YP_877118.1 145937 D 386415 CDS YP_877119.1 118444612 4540110 146586..148115 1 NC_008593.1 stage V sporulation protein B 148115 4540110 NT01CX_1023 Clostridium novyi NT stage V sporulation protein B YP_877119.1 146586 D 386415 CDS YP_877120.1 118444101 4540036 148147..149592 1 NC_008593.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; tetrapyrrole methylase family protein 149592 4540036 NT01CX_1024 Clostridium novyi NT tetrapyrrole methylase family protein YP_877120.1 148147 D 386415 CDS YP_877121.1 118443809 4540812 149700..149978 1 NC_008593.1 identified by match to protein family HMM PF00216; DNA binding protein HU 149978 4540812 NT01CX_1025 Clostridium novyi NT DNA binding protein HU YP_877121.1 149700 D 386415 CDS YP_877122.1 118444469 4540068 150068..150337 1 NC_008593.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 150337 4540068 NT01CX_1026 Clostridium novyi NT S4 domain-containing protein YP_877122.1 150068 D 386415 CDS YP_877123.1 118443122 4541736 150453..150746 1 NC_008593.1 similar to YABP B. subtilis; hypothetical protein 150746 4541736 NT01CX_1027 Clostridium novyi NT hypothetical protein YP_877123.1 150453 D 386415 CDS YP_877124.1 118443675 4541004 150752..151189 1 NC_008593.1 similar to YABQ B. subtilis; hypothetical protein 151189 4541004 NT01CX_1028 Clostridium novyi NT hypothetical protein YP_877124.1 150752 D 386415 CDS YP_877125.1 118444172 4540838 151226..151498 1 NC_008593.1 identified by match to protein family HMM PF04977; septum formation initiator superfamily protein 151498 4540838 NT01CX_1029 Clostridium novyi NT septum formation initiator superfamily protein YP_877125.1 151226 D 386415 CDS YP_877126.1 118444683 4539680 151553..151960 1 NC_008593.1 identified by match to protein family HMM PF00575; hypothetical protein 151960 eif2A 4539680 eif2A Clostridium novyi NT hypothetical protein YP_877126.1 151553 D 386415 CDS YP_877127.1 118443535 4541934 153014..155410 1 NC_008593.1 identified by match to protein family HMM PF07228; stage II sporulation protein E 155410 4541934 NT01CX_1037 Clostridium novyi NT stage II sporulation protein E YP_877127.1 153014 D 386415 CDS YP_877128.1 118443998 4540632 155546..156940 1 NC_008593.1 identified by match to protein family HMM PF01171; cell cycle protein MesJ 156940 4540632 NT01CX_1038 Clostridium novyi NT cell cycle protein MesJ YP_877128.1 155546 D 386415 CDS YP_877129.1 118443133 4541746 156942..157481 1 NC_008593.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 157481 4541746 NT01CX_1039 Clostridium novyi NT hypoxanthine phosphoribosyltransferase YP_877129.1 156942 D 386415 CDS YP_877130.1 118443161 4540305 157552..159582 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 159582 ftsH 4540305 ftsH Clostridium novyi NT ATP-dependent metalloprotease FtsH YP_877130.1 157552 D 386415 CDS YP_877131.1 118443918 4541503 159725..160111 1 NC_008593.1 identified by match to protein family HMM PF03061; hypothetical protein 160111 4541503 NT01CX_1041 Clostridium novyi NT hypothetical protein YP_877131.1 159725 D 386415 CDS YP_877132.1 118443505 4541815 160213..161883 1 NC_008593.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 161883 4541815 NT01CX_1042 Clostridium novyi NT formate--tetrahydrofolate ligase YP_877132.1 160213 D 386415 CDS YP_877133.1 118443370 4541843 162007..162786 1 NC_008593.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 162786 4541843 NT01CX_1043 Clostridium novyi NT pantothenate kinase YP_877133.1 162007 D 386415 CDS YP_877134.1 118442953 4539721 162795..163760 1 NC_008593.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; NifR3 family protein 163760 4539721 NT01CX_1044 Clostridium novyi NT NifR3 family protein YP_877134.1 162795 D 386415 CDS YP_877135.1 118444643 4539779 163989..164468 1 NC_008593.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 164468 greA 4539779 greA Clostridium novyi NT transcription elongation factor GreA YP_877135.1 163989 D 386415 CDS YP_877136.1 118444238 4541531 164518..166050 1 NC_008593.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 166050 lysS 4541531 lysS Clostridium novyi NT lysyl-tRNA synthetase YP_877136.1 164518 D 386415 CDS YP_877137.1 118444423 4540132 166535..167926 1 NC_008593.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 167926 glyS 4540132 glyS Clostridium novyi NT glycyl-tRNA synthetase YP_877137.1 166535 D 386415 CDS YP_877138.1 118444015 4540648 168292..169668 1 NC_008593.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 169668 murD 4540648 murD Clostridium novyi NT UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_877138.1 168292 D 386415 CDS YP_877140.1 118443031 4539649 175569..177647 1 NC_008593.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 177647 fusA 4539649 fusA Clostridium novyi NT elongation factor G YP_877140.1 175569 D 386415 CDS YP_877141.1 118443462 4541900 complement(177781..178371) 1 NC_008593.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 178371 4541900 NT01CX_1057 Clostridium novyi NT rubrerythrin YP_877141.1 177781 R 386415 CDS YP_877142.1 118443875 4541689 178530..178772 1 NC_008593.1 hypothetical protein 178772 4541689 NT01CX_1058 Clostridium novyi NT hypothetical protein YP_877142.1 178530 D 386415 CDS YP_877143.1 118443710 4540500 178729..178923 1 NC_008593.1 hypothetical protein 178923 4540500 NT01CX_1059 Clostridium novyi NT hypothetical protein YP_877143.1 178729 D 386415 CDS YP_877144.1 118443872 4541686 179154..180419 1 NC_008593.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 180419 hisZ 4541686 hisZ Clostridium novyi NT ATP phosphoribosyltransferase regulatory subunit YP_877144.1 179154 D 386415 CDS YP_877145.1 118444399 4541259 180445..181083 1 NC_008593.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 181083 hisG 4541259 hisG Clostridium novyi NT ATP phosphoribosyltransferase catalytic subunit YP_877145.1 180445 D 386415 CDS YP_877146.1 118443051 4541775 181095..182387 1 NC_008593.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 182387 hisD 4541775 hisD Clostridium novyi NT histidinol dehydrogenase YP_877146.1 181095 D 386415 CDS YP_877147.1 118444080 4539939 182387..183457 1 NC_008593.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 183457 hisC 4539939 hisC Clostridium novyi NT histidinol-phosphate aminotransferase YP_877147.1 182387 D 386415 CDS YP_877148.1 118444618 4539586 183438..184028 1 NC_008593.1 identified by match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase (IGPD) 184028 4539586 NT01CX_1064 Clostridium novyi NT imidazoleglycerol-phosphate dehydratase (IGPD) YP_877148.1 183438 D 386415 CDS YP_877149.1 118443203 4539622 184048..184764 1 NC_008593.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 184764 hisA 4539622 hisA Clostridium novyi NT 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_877149.1 184048 D 386415 CDS YP_877150.1 118442966 4539733 184776..185852 1 NC_008593.1 identified by match to protein family HMM PF00977; match to protein family HMM PF01502; match to protein family HMM TIGR00735; imidazole glycerol phosphate synthase subunit HisF 185852 hisF 4539733 hisF Clostridium novyi NT imidazole glycerol phosphate synthase subunit HisF YP_877150.1 184776 D 386415 CDS YP_877151.1 118444103 4540038 185926..186258 1 NC_008593.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 186258 hisE 4540038 hisE Clostridium novyi NT phosphoribosyl-ATP pyrophosphatase YP_877151.1 185926 D 386415 CDS YP_877152.1 118443795 4541136 complement(186296..187735) 1 NC_008593.1 identified by match to protein family HMM PF00614; cardiolipin synthetase 187735 4541136 NT01CX_1068 Clostridium novyi NT cardiolipin synthetase YP_877152.1 186296 R 386415 CDS YP_877153.1 118444156 4541238 188328..189242 1 NC_008593.1 identified by match to protein family HMM PF07656; hypothetical protein 189242 4541238 NT01CX_1069 Clostridium novyi NT hypothetical protein YP_877153.1 188328 D 386415 CDS YP_877154.1 118443746 4541373 189432..190277 1 NC_008593.1 hypothetical protein 190277 4541373 NT01CX_1070 Clostridium novyi NT hypothetical protein YP_877154.1 189432 D 386415 CDS YP_877155.1 118442865 4541990 190278..191105 1 NC_008593.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 191105 panB 4541990 panB Clostridium novyi NT 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_877155.1 190278 D 386415 CDS YP_877156.1 118444343 4540566 191165..192016 1 NC_008593.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 192016 panC 4540566 panC Clostridium novyi NT pantoate--beta-alanine ligase YP_877156.1 191165 D 386415 CDS YP_877157.1 118443940 4540277 192020..192391 1 NC_008593.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 192391 panD 4540277 panD Clostridium novyi NT aspartate alpha-decarboxylase YP_877157.1 192020 D 386415 CDS YP_877158.1 118443503 4541814 complement(192481..192621) 1 NC_008593.1 hypothetical protein 192621 4541814 NT01CX_1074 Clostridium novyi NT hypothetical protein YP_877158.1 192481 R 386415 CDS YP_877159.1 118444533 4540162 complement(192819..193334) 1 NC_008593.1 hypothetical protein 193334 4540162 NT01CX_1075 Clostridium novyi NT hypothetical protein YP_877159.1 192819 R 386415 CDS YP_877160.1 118444516 4540149 193589..195700 1 NC_008593.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 195700 4540149 NT01CX_1076 Clostridium novyi NT anaerobic ribonucleoside triphosphate reductase YP_877160.1 193589 D 386415 CDS YP_877161.1 118442945 4539615 195721..196215 1 NC_008593.1 anaerobic ribonucleoside-triphosphate reductase activating protein 196215 4539615 NT01CX_1077 Clostridium novyi NT anaerobic ribonucleoside-triphosphate reductase activating protein YP_877161.1 195721 D 386415 CDS YP_877162.1 118443417 4541728 complement(196257..197000) 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 197000 4541728 NT01CX_1078 Clostridium novyi NT hypothetical protein YP_877162.1 196257 R 386415 CDS YP_877163.1 118444217 4539689 197170..198555 1 NC_008593.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 198555 4539689 NT01CX_1079 Clostridium novyi NT dipeptidase PepV YP_877163.1 197170 D 386415 CDS YP_877164.1 118442860 4541987 198677..199918 1 NC_008593.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 199918 4541987 NT01CX_1080 Clostridium novyi NT major facilitator superfamily protein YP_877164.1 198677 D 386415 CDS YP_877165.1 118443190 4541478 200097..200708 1 NC_008593.1 similar to YPAA B. subtilis; hypothetical protein 200708 4541478 NT01CX_1081 Clostridium novyi NT hypothetical protein YP_877165.1 200097 D 386415 CDS YP_877166.1 118443645 4539761 200850..201848 1 NC_008593.1 identified by match to protein family HMM PF03576; T4 family peptidase 201848 4539761 NT01CX_1082 Clostridium novyi NT T4 family peptidase YP_877166.1 200850 D 386415 CDS YP_877167.1 118444495 4539914 202087..202638 1 NC_008593.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 202638 4539914 NT01CX_1083 Clostridium novyi NT rubrerythrin YP_877167.1 202087 D 386415 CDS YP_877168.1 118443129 4541742 202869..203327 1 NC_008593.1 identified by match to protein family HMM PF05848; transcription regulator ctsR 203327 4541742 NT01CX_1084 Clostridium novyi NT transcription regulator ctsR YP_877168.1 202869 D 386415 CDS YP_877169.1 118443415 4541726 203395..203919 1 NC_008593.1 identified by match to protein family HMM PF02151; hypothetical protein 203919 4541726 NT01CX_1085 Clostridium novyi NT hypothetical protein YP_877169.1 203395 D 386415 CDS YP_877170.1 118444688 4540209 203931..204965 1 NC_008593.1 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 204965 4540209 NT01CX_1086 Clostridium novyi NT ATP:guanido phosphotransferase YP_877170.1 203931 D 386415 CDS YP_877171.1 118444397 4541257 204994..207435 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; negative regulator of genetic competence clpC/mecB 207435 4541257 NT01CX_1087 Clostridium novyi NT negative regulator of genetic competence clpC/mecB YP_877171.1 204994 D 386415 CDS YP_877172.1 118442912 4540916 207599..208960 1 NC_008593.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 208960 radA 4540916 radA Clostridium novyi NT DNA repair protein RadA YP_877172.1 207599 D 386415 CDS YP_877173.1 118443584 4541882 208992..210059 1 NC_008593.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 210059 4541882 NT01CX_1089 Clostridium novyi NT DNA integrity scanning protein DisA YP_877173.1 208992 D 386415 CDS YP_877174.1 118443994 4540381 complement(210096..210497) 1 NC_008593.1 hypothetical protein 210497 4540381 NT01CX_1090 Clostridium novyi NT hypothetical protein YP_877174.1 210096 R 386415 CDS YP_877175.1 118444634 4539599 210803..211882 1 NC_008593.1 contains a homolog of PilT-like; identified by match to protein family HMM PF01850; match to protein family HMM PF01938; membrane-associated protein 211882 4539599 NT01CX_1091 Clostridium novyi NT membrane-associated protein YP_877175.1 210803 D 386415 CDS YP_877176.1 118443492 4540203 211905..212600 1 NC_008593.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 212600 ispD 4540203 ispD Clostridium novyi NT 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_877176.1 211905 D 386415 CDS YP_877177.1 118442910 4540915 212807..214207 1 NC_008593.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 214207 cysS 4540915 cysS Clostridium novyi NT cysteinyl-tRNA synthetase YP_877177.1 212807 D 386415 CDS YP_877178.1 118444271 4541649 214312..214725 1 NC_008593.1 similar to YACZ B. subtilis homolog; identified by match to protein family HMM PF05948; hypothetical protein 214725 4541649 NT01CX_1094 Clostridium novyi NT hypothetical protein YP_877178.1 214312 D 386415 CDS YP_877179.1 118443925 4541508 214749..215483 1 NC_008593.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 215483 thyX 4541508 thyX Clostridium novyi NT FAD-dependent thymidylate synthase YP_877179.1 214749 D 386415 CDS YP_877180.1 118443866 4541682 215516..216313 1 NC_008593.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 216313 4541682 NT01CX_1096 Clostridium novyi NT RNA methyltransferase YP_877180.1 215516 D 386415 CDS YP_877181.1 118443709 4540246 216323..216829 1 NC_008593.1 identified by match to protein family HMM PF05991; hypothetical protein 216829 4540246 NT01CX_1097 Clostridium novyi NT hypothetical protein YP_877181.1 216323 D 386415 CDS YP_877182.1 118443284 4541907 216937..217596 1 NC_008593.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 217596 4541907 NT01CX_1098 Clostridium novyi NT RNA polymerase factor sigma-70 YP_877182.1 216937 D 386415 CDS YP_877183.1 118443068 4541789 217897..219078 1 NC_008593.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 219078 tuf 4541789 tuf Clostridium novyi NT elongation factor Tu YP_877183.1 217897 D 386415 CDS YP_877184.1 118444061 4541194 219566..219787 1 NC_008593.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 219787 secE 4541194 secE Clostridium novyi NT preprotein translocase subunit SecE YP_877184.1 219566 D 386415 CDS YP_877185.1 118443261 4541055 219908..220429 1 NC_008593.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 220429 nusG 4541055 nusG Clostridium novyi NT transcription antitermination protein NusG YP_877185.1 219908 D 386415 CDS YP_877186.1 118444273 4541651 220503..220928 1 NC_008593.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 220928 rplK 4541651 rplK Clostridium novyi NT 50S ribosomal protein L11 YP_877186.1 220503 D 386415 CDS YP_877187.1 118444059 4541192 220982..221680 1 NC_008593.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 221680 rplA 4541192 rplA Clostridium novyi NT 50S ribosomal protein L1 YP_877187.1 220982 D 386415 CDS YP_877188.1 118443640 4539756 221878..222381 1 NC_008593.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 222381 rplJ 4539756 rplJ Clostridium novyi NT 50S ribosomal protein L10 YP_877188.1 221878 D 386415 CDS YP_877189.1 118443491 4540202 222428..222793 1 NC_008593.1 identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855; 50S ribosomal protein L7/L12 222793 rplL 4540202 rplL Clostridium novyi NT 50S ribosomal protein L7/L12 YP_877189.1 222428 D 386415 CDS YP_877190.1 118443602 4539979 223062..226787 1 NC_008593.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 226787 rpoB 4539979 rpoB Clostridium novyi NT DNA-directed RNA polymerase subunit beta YP_877190.1 223062 D 386415 CDS YP_877191.1 118444505 4539922 226787..230344 1 NC_008593.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 230344 rpoC 4539922 rpoC Clostridium novyi NT DNA-directed RNA polymerase subunit beta' YP_877191.1 226787 D 386415 CDS YP_877192.1 118442928 4539604 230467..230709 1 NC_008593.1 ribosomal protein L7AE family protein 230709 4539604 NT01CX_1109 Clostridium novyi NT ribosomal protein L7AE family protein YP_877192.1 230467 D 386415 CDS YP_877193.1 118442937 4539610 230765..231142 1 NC_008593.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 231142 rpsL 4539610 rpsL Clostridium novyi NT 30S ribosomal protein S12 YP_877193.1 230765 D 386415 CDS YP_877194.1 118443371 4541844 231274..231744 1 NC_008593.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 231744 rpsG 4541844 rpsG Clostridium novyi NT 30S ribosomal protein S7 YP_877194.1 231274 D 386415 CDS YP_877195.1 118444241 4541534 231857..233920 1 NC_008593.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 233920 fusA 4541534 fusA Clostridium novyi NT elongation factor G YP_877195.1 231857 D 386415 CDS YP_877196.1 118444674 4539673 233985..235166 1 NC_008593.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 235166 4539673 NT01CX_1113 Clostridium novyi NT elongation factor Tu YP_877196.1 233985 D 386415 CDS YP_877197.1 118443189 4541477 235577..235885 1 NC_008593.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 235885 rpsJ 4541477 rpsJ Clostridium novyi NT 30S ribosomal protein S10 YP_877197.1 235577 D 386415 CDS YP_877198.1 118443770 4541045 235951..236580 1 NC_008593.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 236580 rplC 4541045 rplC Clostridium novyi NT 50S ribosomal protein L3 YP_877198.1 235951 D 386415 CDS YP_877199.1 118444236 4541529 236606..237226 1 NC_008593.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 237226 rplD 4541529 rplD Clostridium novyi NT 50S ribosomal protein L4 YP_877199.1 236606 D 386415 CDS YP_877200.1 118443565 4539889 237226..237516 1 NC_008593.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 237516 rplW 4539889 rplW Clostridium novyi NT 50S ribosomal protein L23 YP_877200.1 237226 D 386415 CDS YP_877201.1 118444528 4540158 237577..238410 1 NC_008593.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 238410 rplB 4540158 rplB Clostridium novyi NT 50S ribosomal protein L2 YP_877201.1 237577 D 386415 CDS YP_877202.1 118443045 4541771 238483..238767 1 NC_008593.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 238767 rpsS 4541771 rpsS Clostridium novyi NT 30S ribosomal protein S19 YP_877202.1 238483 D 386415 CDS YP_877203.1 118443412 4541723 238789..239124 1 NC_008593.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 239124 rplV 4541723 rplV Clostridium novyi NT 50S ribosomal protein L22 YP_877203.1 238789 D 386415 CDS YP_877204.1 118443821 4540821 239140..239805 1 NC_008593.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 239805 rpsC 4540821 rpsC Clostridium novyi NT 30S ribosomal protein S3 YP_877204.1 239140 D 386415 CDS YP_877205.1 118443980 4540370 239823..240266 1 NC_008593.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 240266 rplP 4540370 rplP Clostridium novyi NT 50S ribosomal protein L16 YP_877205.1 239823 D 386415 CDS YP_877206.1 118444394 4541255 240256..240468 1 NC_008593.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 240468 rpmC 4541255 rpmC Clostridium novyi NT 50S ribosomal protein L29 YP_877206.1 240256 D 386415 CDS YP_877207.1 118444687 4540208 240491..240745 1 NC_008593.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 240745 rpsQ 4540208 rpsQ Clostridium novyi NT 30S ribosomal protein S17 YP_877207.1 240491 D 386415 CDS YP_877208.1 118444292 4539713 240773..241147 1 NC_008593.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 241147 rplN 4539713 rplN Clostridium novyi NT 50S ribosomal protein L14 YP_877208.1 240773 D 386415 CDS YP_877209.1 118444262 4541640 241164..241481 1 NC_008593.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 241481 rplX 4541640 rplX Clostridium novyi NT 50S ribosomal protein L24 YP_877209.1 241164 D 386415 CDS YP_877210.1 118444371 4540458 241504..242043 1 NC_008593.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 242043 rplE 4540458 rplE Clostridium novyi NT 50S ribosomal protein L5 YP_877210.1 241504 D 386415 CDS YP_877211.1 118443929 4540267 242059..242244 1 NC_008593.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 242244 rpsN 4540267 rpsN Clostridium novyi NT 30S ribosomal protein S14 YP_877211.1 242059 D 386415 CDS YP_877212.1 118443780 4541050 242276..242671 1 NC_008593.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 242671 rpsH 4541050 rpsH Clostridium novyi NT 30S ribosomal protein S8 YP_877212.1 242276 D 386415 CDS YP_877213.1 118442887 4541970 242702..243241 1 NC_008593.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 243241 rplF 4541970 rplF Clostridium novyi NT 50S ribosomal protein L6 YP_877213.1 242702 D 386415 CDS YP_877214.1 118444517 4540150 243272..243634 1 NC_008593.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 243634 rplR 4540150 rplR Clostridium novyi NT 50S ribosomal protein L18 YP_877214.1 243272 D 386415 CDS YP_877215.1 118444110 4540045 243651..244148 1 NC_008593.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 244148 rpsE 4540045 rpsE Clostridium novyi NT 30S ribosomal protein S5 YP_877215.1 243651 D 386415 CDS YP_877216.1 118443115 4541769 244162..244341 1 NC_008593.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 244341 rpmD 4541769 rpmD Clostridium novyi NT 50S ribosomal protein L30 YP_877216.1 244162 D 386415 CDS YP_877217.1 118443660 4539772 244374..244814 1 NC_008593.1 late assembly protein; 50S ribosomal protein L15 244814 rplO 4539772 rplO Clostridium novyi NT 50S ribosomal protein L15 YP_877217.1 244374 D 386415 CDS YP_877218.1 118443859 4541675 244816..246090 1 NC_008593.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 246090 secY 4541675 secY Clostridium novyi NT preprotein translocase subunit SecY YP_877218.1 244816 D 386415 CDS YP_877219.1 118444633 4539598 246118..246768 1 NC_008593.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 246768 adk 4539598 adk Clostridium novyi NT adenylate kinase YP_877219.1 246118 D 386415 CDS YP_877220.1 118443338 4539852 246769..247515 1 NC_008593.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 247515 4539852 NT01CX_1137 Clostridium novyi NT methionine aminopeptidase YP_877220.1 246769 D 386415 CDS YP_877221.1 118442931 4539606 247529..247810 1 NC_008593.1 hypothetical protein 247810 4539606 NT01CX_1138 Clostridium novyi NT hypothetical protein YP_877221.1 247529 D 386415 CDS YP_877222.1 118444119 4540970 247818..248036 1 NC_008593.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00008; translation initiation factor IF-1 248036 infA 4540970 infA Clostridium novyi NT translation initiation factor IF-1 YP_877222.1 247818 D 386415 CDS YP_877223.1 118443758 4541383 248052..248165 1 NC_008593.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 248165 rpmJ 4541383 rpmJ Clostridium novyi NT 50S ribosomal protein L36 YP_877223.1 248052 D 386415 CDS YP_877224.1 118443662 4539774 248321..248692 1 NC_008593.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 248692 rpsM 4539774 rpsM Clostridium novyi NT 30S ribosomal protein S13 YP_877224.1 248321 D 386415 CDS YP_877225.1 118443263 4541057 248709..249104 1 NC_008593.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 249104 rpsK 4541057 rpsK Clostridium novyi NT 30S ribosomal protein S11 YP_877225.1 248709 D 386415 CDS YP_877226.1 118444508 4539925 249132..249752 1 NC_008593.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 249752 rpsD 4539925 rpsD Clostridium novyi NT 30S ribosomal protein S4 YP_877226.1 249132 D 386415 CDS YP_877227.1 118443967 4540758 249817..250764 1 NC_008593.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 250764 rpoA 4540758 rpoA Clostridium novyi NT DNA-directed RNA polymerase subunit alpha YP_877227.1 249817 D 386415 CDS YP_877228.1 118443845 4540859 250778..251119 1 NC_008593.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 251119 rplQ 4540859 rplQ Clostridium novyi NT 50S ribosomal protein L17 YP_877228.1 250778 D 386415 CDS YP_877229.1 118443551 4539877 251204..252046 1 NC_008593.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 252046 4539877 NT01CX_1146 Clostridium novyi NT cobalt transporter ATP-binding subunit YP_877229.1 251204 D 386415 CDS YP_877230.1 118443281 4541070 252031..252897 1 NC_008593.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 252897 cbiO 4541070 cbiO Clostridium novyi NT cobalt transporter ATP-binding subunit YP_877230.1 252031 D 386415 CDS YP_877231.1 118443724 4540509 252890..253702 1 NC_008593.1 identified by match to protein family HMM PF02361; cobalt transport protein 253702 cbiQ 4540509 cbiQ Clostridium novyi NT cobalt transport protein YP_877231.1 252890 D 386415 CDS YP_877232.1 118444045 4541183 253737..254477 1 NC_008593.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 254477 truA 4541183 truA Clostridium novyi NT tRNA pseudouridine synthase A YP_877232.1 253737 D 386415 CDS YP_877233.1 118443975 4540366 254650..255084 1 NC_008593.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 255084 rplM 4540366 rplM Clostridium novyi NT 50S ribosomal protein L13 YP_877233.1 254650 D 386415 CDS YP_877234.1 118444492 4539970 255115..255507 1 NC_008593.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 255507 rpsI 4539970 rpsI Clostridium novyi NT 30S ribosomal protein S9 YP_877234.1 255115 D 386415 CDS YP_877235.1 118442889 4541972 255807..256517 1 NC_008593.1 identified by match to protein family HMM PF01520; germination-specific N-acetylmuramoyl-L-alanine amidase 256517 4541972 NT01CX_1152 Clostridium novyi NT germination-specific N-acetylmuramoyl-L-alanine amidase YP_877235.1 255807 D 386415 CDS YP_877236.1 118443406 4541717 256665..257195 1 NC_008593.1 citX protein 257195 4541717 NT01CX_1153 Clostridium novyi NT citX protein YP_877236.1 256665 D 386415 CDS YP_877237.1 118444252 4541543 complement(257239..258849) 1 NC_008593.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi cotransporter family protein 258849 4541543 NT01CX_1154 Clostridium novyi NT Na/Pi cotransporter family protein YP_877237.1 257239 R 386415 CDS YP_877238.1 118444593 4540094 259234..260850 1 NC_008593.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 260850 ptsI 4540094 ptsI Clostridium novyi NT phosphoenolpyruvate-protein phosphotransferase YP_877238.1 259234 D 386415 CDS YP_877239.1 118443107 4541764 261046..261768 1 NC_008593.1 lipoprotein 261768 4541764 NT01CX_1156 Clostridium novyi NT lipoprotein YP_877239.1 261046 D 386415 CDS YP_877240.1 118444627 4539593 261795..263078 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 263078 4539593 NT01CX_1157 Clostridium novyi NT hypothetical protein YP_877240.1 261795 D 386415 CDS YP_877241.1 118444071 4541201 263297..263614 1 NC_008593.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 263614 4541201 NT01CX_1158 Clostridium novyi NT thioredoxin YP_877241.1 263297 D 386415 CDS YP_877242.1 118443538 4541937 263677..264525 1 NC_008593.1 identified by match to protein family HMM PF00070; thioredoxin reductase 264525 trxB 4541937 trxB Clostridium novyi NT thioredoxin reductase YP_877242.1 263677 D 386415 CDS YP_877243.1 118444601 4540101 complement(264587..265117) 1 NC_008593.1 spore cortex-lytic enzyme (SCLE) 265117 4540101 NT01CX_1160 Clostridium novyi NT spore cortex-lytic enzyme (SCLE) YP_877243.1 264587 R 386415 CDS YP_877244.1 118443214 4539631 complement(265203..266216) 1 NC_008593.1 hypothetical protein 266216 4539631 NT01CX_1161 Clostridium novyi NT hypothetical protein YP_877244.1 265203 R 386415 CDS YP_877245.1 118443762 4541037 266415..267260 1 NC_008593.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 267260 4541037 NT01CX_1162 Clostridium novyi NT hypothetical protein YP_877245.1 266415 D 386415 CDS YP_877246.1 118444362 4540449 267233..268522 1 NC_008593.1 similar to YBBR Bacillus subtilis; hypothetical protein 268522 4540449 NT01CX_1163 Clostridium novyi NT hypothetical protein YP_877246.1 267233 D 386415 CDS YP_877247.1 118443022 4540594 268542..270140 1 NC_008593.1 FAD-dependent dehydrogenase 270140 4540594 NT01CX_1164 Clostridium novyi NT FAD-dependent dehydrogenase YP_877247.1 268542 D 386415 CDS YP_877248.1 118443523 4541926 270304..271653 1 NC_008593.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 271653 glmM 4541926 glmM Clostridium novyi NT phosphoglucosamine mutase YP_877248.1 270304 D 386415 CDS YP_877249.1 118443936 4540273 272184..274010 1 NC_008593.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 274010 glmS 4540273 glmS Clostridium novyi NT glucosamine--fructose-6-phosphate aminotransferase YP_877249.1 272184 D 386415 CDS YP_877250.1 118443482 4540193 274687..277368 1 NC_008593.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 277368 ppdK 4540193 ppdK Clostridium novyi NT pyruvate phosphate dikinase YP_877250.1 274687 D 386415 CDS YP_877251.1 118443792 4541133 complement(277519..279531) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 279531 4541133 NT01CX_1168 Clostridium novyi NT methyl-accepting chemotaxis protein YP_877251.1 277519 R 386415 CDS YP_877252.1 118444318 4540802 279669..279830 1 NC_008593.1 identified by match to protein family HMM PF00301; rubredoxin 279830 4540802 NT01CX_1169 Clostridium novyi NT rubredoxin YP_877252.1 279669 D 386415 CDS YP_877253.1 118443202 4541490 279971..280390 1 NC_008593.1 identified by match to protein family HMM PF03479; hypothetical protein 280390 4541490 NT01CX_1170 Clostridium novyi NT hypothetical protein YP_877253.1 279971 D 386415 CDS YP_877254.1 118443749 4541376 280491..282191 1 NC_008593.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 282191 4541376 NT01CX_1171 Clostridium novyi NT sulfate permease YP_877254.1 280491 D 386415 CDS YP_877255.1 118444075 4539935 complement(282274..282621) 1 NC_008593.1 hypothetical protein 282621 4539935 NT01CX_1172 Clostridium novyi NT hypothetical protein YP_877255.1 282274 R 386415 CDS YP_877256.1 118444583 4540125 282770..283186 1 NC_008593.1 hypothetical protein 283186 4540125 NT01CX_1173 Clostridium novyi NT hypothetical protein YP_877256.1 282770 D 386415 CDS YP_877257.1 118444300 4539718 283398..283940 1 NC_008593.1 identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor 283940 4539718 NT01CX_1174 Clostridium novyi NT ECF subfamily RNA polymerase sigma factor YP_877257.1 283398 D 386415 CDS YP_877258.1 118444229 4539700 283944..284705 1 NC_008593.1 hypothetical protein 284705 4539700 NT01CX_1175 Clostridium novyi NT hypothetical protein YP_877258.1 283944 D 386415 CDS YP_877259.1 118443453 4541892 284838..285581 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 285581 4541892 NT01CX_1176 Clostridium novyi NT ABC transporter ATP-binding protein YP_877259.1 284838 D 386415 CDS YP_877260.1 118444466 4540065 285588..286001 1 NC_008593.1 hypothetical protein 286001 4540065 NT01CX_1177 Clostridium novyi NT hypothetical protein YP_877260.1 285588 D 386415 CDS YP_877261.1 118443160 4541710 285998..286834 1 NC_008593.1 hypothetical protein 286834 4541710 NT01CX_1178 Clostridium novyi NT hypothetical protein YP_877261.1 285998 D 386415 CDS YP_877262.1 118443569 4541868 286844..287779 1 NC_008593.1 hypothetical protein 287779 4541868 NT01CX_1179 Clostridium novyi NT hypothetical protein YP_877262.1 286844 D 386415 CDS YP_877263.1 118444242 4541535 complement(287860..288057) 1 NC_008593.1 hypothetical protein 288057 4541535 NT01CX_1180 Clostridium novyi NT hypothetical protein YP_877263.1 287860 R 386415 CDS YP_877264.1 118444363 4540450 complement(288087..288773) 1 NC_008593.1 lipoprotein 288773 4540450 NT01CX_1181 Clostridium novyi NT lipoprotein YP_877264.1 288087 R 386415 CDS YP_877265.1 118444551 4540391 288968..289105 1 NC_008593.1 transcriptional regulator 289105 4540391 NT01CX_1182 Clostridium novyi NT transcriptional regulator YP_877265.1 288968 D 386415 CDS YP_877266.1 118444007 4540640 289123..289536 1 NC_008593.1 HtpX family Zn-dependent protease 289536 4540640 NT01CX_1183 Clostridium novyi NT HtpX family Zn-dependent protease YP_877266.1 289123 D 386415 CDS YP_877267.1 118443599 4539976 289693..291003 1 NC_008593.1 identified by match to protein family HMM PF05569; hypothetical protein 291003 4539976 NT01CX_1184 Clostridium novyi NT hypothetical protein YP_877267.1 289693 D 386415 CDS YP_877268.1 118443178 4540319 291082..291570 1 NC_008593.1 malate permease 291570 4540319 NT01CX_1185 Clostridium novyi NT malate permease YP_877268.1 291082 D 386415 CDS YP_877269.1 118444395 4541256 291917..293863 1 NC_008593.1 hypothetical protein 293863 4541256 NT01CX_1186 Clostridium novyi NT hypothetical protein YP_877269.1 291917 D 386415 CDS YP_877270.1 118442935 4539609 293879..294718 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 294718 4539609 NT01CX_1187 Clostridium novyi NT ABC transporter ATP-binding protein YP_877270.1 293879 D 386415 CDS YP_877271.1 118443336 4539850 294723..295367 1 NC_008593.1 ABC transporter permease 295367 4539850 NT01CX_1188 Clostridium novyi NT ABC transporter permease YP_877271.1 294723 D 386415 CDS YP_877272.1 118443976 4540367 295521..295643 1 NC_008593.1 DNA-binding response regulator/sensor histidine kinase 295643 4540367 NT01CX_1189 Clostridium novyi NT DNA-binding response regulator/sensor histidine kinase YP_877272.1 295521 D 386415 CDS YP_877273.1 118443058 4541781 295664..295768 1 NC_008593.1 sensor protein resE 295768 4541781 NT01CX_1190 Clostridium novyi NT sensor protein resE YP_877273.1 295664 D 386415 CDS YP_877274.1 118443468 4541904 295890..296585 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 296585 4541904 NT01CX_1191 Clostridium novyi NT ABC transporter ATP-binding protein YP_877274.1 295890 D 386415 CDS YP_877275.1 118444106 4540041 296589..298142 1 NC_008593.1 hypothetical protein 298142 4540041 NT01CX_1192 Clostridium novyi NT hypothetical protein YP_877275.1 296589 D 386415 CDS YP_877276.1 118444537 4540166 298195..298635 1 NC_008593.1 identified by match to protein family HMM PF00583; spermine/spermidine acetyltransferase 298635 4540166 NT01CX_1193 Clostridium novyi NT spermine/spermidine acetyltransferase YP_877276.1 298195 D 386415 CDS YP_877277.1 118443616 4541849 complement(298693..299313) 1 NC_008593.1 hypothetical protein 299313 4541849 NT01CX_1194 Clostridium novyi NT hypothetical protein YP_877277.1 298693 R 386415 CDS YP_877278.1 118444211 4539686 complement(299520..301112) 1 NC_008593.1 identified by match to protein family HMM PF03415; alpha-clostripain 301112 4539686 NT01CX_1195 Clostridium novyi NT alpha-clostripain YP_877278.1 299520 R 386415 CDS YP_877279.1 118443893 4540434 301439..303163 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 303163 4540434 NT01CX_1196 Clostridium novyi NT methyl-accepting chemotaxis protein YP_877279.1 301439 D 386415 CDS YP_877280.1 118444473 4539954 303364..303675 1 NC_008593.1 hypothetical protein 303675 4539954 NT01CX_1197 Clostridium novyi NT hypothetical protein YP_877280.1 303364 D 386415 CDS YP_877281.1 118443001 4540578 303871..304239 1 NC_008593.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 304239 4540578 NT01CX_1198 Clostridium novyi NT ArsR family transcriptional regulator YP_877281.1 303871 D 386415 CDS YP_877282.1 118443354 4541830 304255..306390 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 306390 4541830 NT01CX_1199 Clostridium novyi NT cadmium-translocating P-type ATPase YP_877282.1 304255 D 386415 CDS YP_877283.1 118444027 4540658 306569..307891 1 NC_008593.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 307891 4540658 NT01CX_1200 Clostridium novyi NT amidohydrolase YP_877283.1 306569 D 386415 CDS YP_877284.1 118443283 4541072 307891..308709 1 NC_008593.1 hypothetical protein 308709 4541072 NT01CX_1201 Clostridium novyi NT hypothetical protein YP_877284.1 307891 D 386415 CDS YP_877285.1 118443712 4540502 308713..309159 1 NC_008593.1 hypothetical protein 309159 4540502 NT01CX_1202 Clostridium novyi NT hypothetical protein YP_877285.1 308713 D 386415 CDS YP_877286.1 118444534 4540163 complement(309241..309618) 1 NC_008593.1 hypothetical protein 309618 4540163 NT01CX_1203 Clostridium novyi NT hypothetical protein YP_877286.1 309241 R 386415 CDS YP_877287.1 118444096 4540031 complement(309684..310874) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha 310874 4540031 NT01CX_1204 Clostridium novyi NT electron transfer flavoprotein subunit alpha YP_877287.1 309684 R 386415 CDS YP_877288.1 118443965 4540756 complement(310887..311681) 1 NC_008593.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 311681 4540756 NT01CX_1205 Clostridium novyi NT electron transfer flavoprotein subunit beta YP_877288.1 310887 R 386415 CDS YP_877289.1 118443518 4541825 complement(311690..313258) 1 NC_008593.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding 313258 4541825 NT01CX_1206 Clostridium novyi NT oxidoreductase, FAD-binding YP_877289.1 311690 R 386415 CDS YP_877290.1 118443713 4540503 313475..315136 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory transduction histidine kinase 315136 4540503 NT01CX_1207 Clostridium novyi NT sensory transduction histidine kinase YP_877290.1 313475 D 386415 CDS YP_877291.1 118443268 4541060 complement(315165..315677) 1 NC_008593.1 identified by match to protein family HMM PF00186; dihydrofolate reductase 315677 folA 4541060 folA Clostridium novyi NT dihydrofolate reductase YP_877291.1 315165 R 386415 CDS YP_877292.1 118444290 4539711 complement(315723..316184) 1 NC_008593.1 hypothetical protein 316184 4539711 NT01CX_1209 Clostridium novyi NT hypothetical protein YP_877292.1 315723 R 386415 CDS YP_877293.1 118443888 4540430 316504..317781 1 NC_008593.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine/O-acetylserine sulfhydrylase 317781 4540430 NT01CX_1210 Clostridium novyi NT O-acetylhomoserine/O-acetylserine sulfhydrylase YP_877293.1 316504 D 386415 CDS YP_877294.1 118444026 4540657 317800..318708 1 NC_008593.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 318708 metA 4540657 metA Clostridium novyi NT homoserine O-succinyltransferase YP_877294.1 317800 D 386415 CDS YP_877295.1 118444344 4540567 complement(318970..320289) 1 NC_008593.1 ISBma2, transposase 320289 4540567 NT01CX_1212 Clostridium novyi NT ISBma2, transposase YP_877295.1 318970 R 386415 CDS YP_877296.1 118443188 4541476 320872..321198 1 NC_008593.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 321198 4541476 NT01CX_1213 Clostridium novyi NT MarR family transcriptional regulator YP_877296.1 320872 D 386415 CDS YP_877297.1 118443463 4541901 321200..322567 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 322567 4541901 NT01CX_1214 Clostridium novyi NT MATE efflux family protein YP_877297.1 321200 D 386415 CDS YP_877298.1 118443753 4541378 complement(322638..323510) 1 NC_008593.1 identified by match to protein family HMM PF02588; hypothetical protein 323510 4541378 NT01CX_1215 Clostridium novyi NT hypothetical protein YP_877298.1 322638 R 386415 CDS YP_877299.1 118444373 4540460 323670..325094 1 NC_008593.1 hypothetical protein 325094 4540460 NT01CX_1216 Clostridium novyi NT hypothetical protein YP_877299.1 323670 D 386415 CDS YP_877300.1 118444039 4540666 325173..326390 1 NC_008593.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 326390 4540666 NT01CX_1217 Clostridium novyi NT sensor histidine kinase YP_877300.1 325173 D 386415 CDS YP_877301.1 118443647 4539762 326404..327459 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; two-component response regulator 327459 4539762 NT01CX_1218 Clostridium novyi NT two-component response regulator YP_877301.1 326404 D 386415 CDS YP_877302.1 118443444 4541962 327685..328842 1 NC_008593.1 identified by match to protein family HMM PF00465; 1,3-propanediol dehydrogenase 328842 4541962 NT01CX_1219 Clostridium novyi NT 1,3-propanediol dehydrogenase YP_877302.1 327685 D 386415 CDS YP_877303.1 118443080 4541800 328867..331239 1 NC_008593.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 331239 4541800 NT01CX_1220 Clostridium novyi NT pyruvate formate-lyase YP_877303.1 328867 D 386415 CDS YP_877304.1 118444335 4540560 331262..332176 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; glycerol dehydratase activator 332176 pflC 4540560 pflC Clostridium novyi NT glycerol dehydratase activator YP_877304.1 331262 D 386415 CDS YP_877305.1 118443858 4541674 332305..333003 1 NC_008593.1 hypothetical protein 333003 4541674 NT01CX_1222 Clostridium novyi NT hypothetical protein YP_877305.1 332305 D 386415 CDS YP_877306.1 118443669 4540999 333072..333914 1 NC_008593.1 hypothetical protein 333914 4540999 NT01CX_1223 Clostridium novyi NT hypothetical protein YP_877306.1 333072 D 386415 CDS YP_877307.1 118443144 4541696 334215..334310 1 NC_008593.1 hypothetical protein 334310 4541696 NT01CX_1224 Clostridium novyi NT hypothetical protein YP_877307.1 334215 D 386415 CDS YP_877308.1 118444657 4539790 334734..335291 1 NC_008593.1 identified by match to protein family HMM PF01381; DNA-binding protein 335291 4539790 NT01CX_1225 Clostridium novyi NT DNA-binding protein YP_877308.1 334734 D 386415 CDS YP_877309.1 118444263 4541641 335330..336373 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding subunit 336373 4541641 NT01CX_1226 Clostridium novyi NT spermidine/putrescine ABC transporter ATP-binding subunit YP_877309.1 335330 D 386415 CDS YP_877310.1 118444420 4541221 336376..337197 1 NC_008593.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 337197 potB 4541221 potB Clostridium novyi NT spermidine/putrescine ABC transporter permease YP_877310.1 336376 D 386415 CDS YP_877311.1 118442995 4541090 337191..337982 1 NC_008593.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 2 337982 potC 4541090 potC Clostridium novyi NT spermidine/putrescine ABC transporter permease 2 YP_877311.1 337191 D 386415 CDS YP_877312.1 118443532 4541931 337982..339025 1 NC_008593.1 identified by match to protein family HMM PF01547; extracellular solute-binding protein 339025 4541931 NT01CX_1229 Clostridium novyi NT extracellular solute-binding protein YP_877312.1 337982 D 386415 CDS YP_877313.1 118444132 4540982 complement(339100..340791) 1 NC_008593.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 340791 4540982 NT01CX_1230 Clostridium novyi NT phosphoglucomutase/phosphomannomutase YP_877313.1 339100 R 386415 CDS YP_877314.1 118443429 4541951 complement(340824..341099) 1 NC_008593.1 hypothetical protein 341099 4541951 NT01CX_1231 Clostridium novyi NT hypothetical protein YP_877314.1 340824 R 386415 CDS YP_877315.1 118443930 4540268 complement(341147..342079) 1 NC_008593.1 identified by match to protein family HMM PF01244; dipeptidase 342079 4540268 NT01CX_1232 Clostridium novyi NT dipeptidase YP_877315.1 341147 R 386415 CDS YP_877316.1 118444104 4540039 342563..343954 1 NC_008593.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 343954 asnC 4540039 asnC Clostridium novyi NT asparaginyl-tRNA synthetase YP_877316.1 342563 D 386415 CDS YP_877317.1 118444560 4540399 344099..344704 1 NC_008593.1 hypothetical protein 344704 4540399 NT01CX_1234 Clostridium novyi NT hypothetical protein YP_877317.1 344099 D 386415 CDS YP_877318.1 118443563 4539887 344813..348217 1 NC_008593.1 ATP-dependent deoxyribonuclease subunit B 348217 4539887 NT01CX_1235 Clostridium novyi NT ATP-dependent deoxyribonuclease subunit B YP_877318.1 344813 D 386415 CDS YP_877319.1 118444179 4540844 348205..351915 1 NC_008593.1 identified by match to protein family HMM PF00580; ATP-dependent nuclease subunit A 351915 4540844 NT01CX_1236 Clostridium novyi NT ATP-dependent nuclease subunit A YP_877319.1 348205 D 386415 CDS YP_877320.1 118444127 4540978 351935..352918 1 NC_008593.1 identified by match to protein family HMM PF01966; HD domain-containing protein 352918 4540978 NT01CX_1237 Clostridium novyi NT HD domain-containing protein YP_877320.1 351935 D 386415 CDS YP_877321.1 118444566 4540111 353393..354379 1 NC_008593.1 identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein 354379 4540111 NT01CX_1238 Clostridium novyi NT sodium/bile acid symporter family protein YP_877321.1 353393 D 386415 CDS YP_877322.1 118443027 4539646 354428..355498 1 NC_008593.1 identified by match to protein family HMM PF00465; glycerol dehydrogenase 355498 4539646 NT01CX_1239 Clostridium novyi NT glycerol dehydrogenase YP_877322.1 354428 D 386415 CDS YP_877323.1 118443494 4540205 355564..357297 1 NC_008593.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289; oligoendopeptidase F 357297 4540205 NT01CX_1240 Clostridium novyi NT oligoendopeptidase F YP_877323.1 355564 D 386415 CDS YP_877324.1 118443912 4541499 357382..357984 1 NC_008593.1 identified by match to protein family HMM PF02915; rubrerythrin 357984 4541499 NT01CX_1241 Clostridium novyi NT rubrerythrin YP_877324.1 357382 D 386415 CDS YP_877325.1 118444336 4540561 358178..359617 1 NC_008593.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 359617 glgA 4540561 glgA Clostridium novyi NT glycogen synthase YP_877325.1 358178 D 386415 CDS YP_877326.1 118443033 4539651 359645..362068 1 NC_008593.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 362068 4539651 NT01CX_1243 Clostridium novyi NT glycogen phosphorylase YP_877326.1 359645 D 386415 CDS YP_877327.1 118443450 4541890 complement(362131..362757) 1 NC_008593.1 identified by match to protein family HMM PF01476; LysM domain-containing protein 362757 4541890 NT01CX_1244 Clostridium novyi NT LysM domain-containing protein YP_877327.1 362131 R 386415 CDS YP_877328.1 118443907 4541495 362947..363186 1 NC_008593.1 hypothetical protein 363186 4541495 NT01CX_1245 Clostridium novyi NT hypothetical protein YP_877328.1 362947 D 386415 CDS YP_877329.1 118444288 4539710 363296..363487 1 NC_008593.1 identified by match to protein family HMM PF00037; ferredoxin 363487 4539710 NT01CX_1246 Clostridium novyi NT ferredoxin YP_877329.1 363296 D 386415 CDS YP_877330.1 118444672 4539671 complement(363548..364360) 1 NC_008593.1 hypothetical protein 364360 4539671 NT01CX_1247 Clostridium novyi NT hypothetical protein YP_877330.1 363548 R 386415 CDS YP_877331.1 118443297 4541917 complement(364409..365101) 1 NC_008593.1 hypothetical protein 365101 4541917 NT01CX_1248 Clostridium novyi NT hypothetical protein YP_877331.1 364409 R 386415 CDS YP_877332.1 118443606 4539982 365494..366561 1 NC_008593.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator 366561 4539982 NT01CX_1249 Clostridium novyi NT transcriptional regulator YP_877332.1 365494 D 386415 CDS YP_877333.1 118444121 4540972 366741..367955 1 NC_008593.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; DNA repair exonuclease 367955 4540972 NT01CX_1250 Clostridium novyi NT DNA repair exonuclease YP_877333.1 366741 D 386415 CDS YP_877334.1 118443433 4541954 367945..371475 1 NC_008593.1 exonuclease 371475 4541954 NT01CX_1251 Clostridium novyi NT exonuclease YP_877334.1 367945 D 386415 CDS YP_877335.1 118443828 4540825 371603..372937 1 NC_008593.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 372937 4540825 NT01CX_1252 Clostridium novyi NT Na+/H+ antiporter family protein YP_877335.1 371603 D 386415 CDS YP_877336.1 118444542 4540386 373098..374915 1 NC_008593.1 S-layer protein 374915 4540386 NT01CX_1253 Clostridium novyi NT S-layer protein YP_877336.1 373098 D 386415 CDS YP_877337.1 118443050 4541774 complement(374987..375865) 1 NC_008593.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 375865 sdaAA 4541774 sdaAA Clostridium novyi NT L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_877337.1 374987 R 386415 CDS YP_877338.1 118443198 4541486 complement(375870..376553) 1 NC_008593.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 376553 sdaAB 4541486 sdaAB Clostridium novyi NT L-serine dehydratase, iron-sulfur-dependent subunit beta YP_877338.1 375870 R 386415 CDS YP_877339.1 118443559 4539883 376745..377212 1 NC_008593.1 small multi-drug export protein 377212 4539883 NT01CX_1256 Clostridium novyi NT small multi-drug export protein YP_877339.1 376745 D 386415 CDS YP_877340.1 118444715 4541514 377233..378894 1 NC_008593.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; two-component sensor kinase 378894 4541514 NT01CX_1257 Clostridium novyi NT two-component sensor kinase YP_877340.1 377233 D 386415 CDS YP_877341.1 118444167 4540834 378905..379615 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; sensory transduction protein lytT 379615 4540834 NT01CX_1258 Clostridium novyi NT sensory transduction protein lytT YP_877341.1 378905 D 386415 CDS YP_877342.1 118444139 4541223 379727..381157 1 NC_008593.1 identified by match to protein family HMM PF02554; carbon starvation protein A 381157 4541223 NT01CX_1259 Clostridium novyi NT carbon starvation protein A YP_877342.1 379727 D 386415 CDS YP_877343.1 118443594 4539973 381467..381817 1 NC_008593.1 hypothetical protein 381817 4539973 NT01CX_1260 Clostridium novyi NT hypothetical protein YP_877343.1 381467 D 386415 CDS YP_877344.1 118443197 4541485 381944..382360 1 NC_008593.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 382360 acpS 4541485 acpS Clostridium novyi NT 4'-phosphopantetheinyl transferase YP_877344.1 381944 D 386415 CDS YP_877345.1 118443968 4540759 382320..383825 1 NC_008593.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; YjeF family protein 383825 4540759 NT01CX_1262 Clostridium novyi NT YjeF family protein YP_877345.1 382320 D 386415 CDS YP_877346.1 118442978 4541076 383903..384520 1 NC_008593.1 hypothetical protein 384520 4541076 NT01CX_1263 Clostridium novyi NT hypothetical protein YP_877346.1 383903 D 386415 CDS YP_877347.1 118444310 4540795 384577..385740 1 NC_008593.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 385740 alr 4540795 alr Clostridium novyi NT alanine racemase YP_877347.1 384577 D 386415 CDS YP_877348.1 118444186 4541316 385886..386212 1 NC_008593.1 hypothetical protein 386212 4541316 NT01CX_1265 Clostridium novyi NT hypothetical protein YP_877348.1 385886 D 386415 CDS YP_877349.1 118443635 4541863 386139..386519 1 NC_008593.1 identified by match to protein family HMM PF02452; pemK family DNA-binding protein 386519 4541863 NT01CX_1266 Clostridium novyi NT pemK family DNA-binding protein YP_877349.1 386139 D 386415 CDS YP_877350.1 118444227 4539698 386623..387447 1 NC_008593.1 identified by match to protein family HMM PF00456; transketolase 387447 4539698 NT01CX_1267 Clostridium novyi NT transketolase YP_877350.1 386623 D 386415 CDS YP_877351.1 118444098 4540033 387447..388388 1 NC_008593.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 388388 4540033 NT01CX_1268 Clostridium novyi NT transketolase, C-terminal subunit YP_877351.1 387447 D 386415 CDS YP_877352.1 118443575 4541873 388521..389384 1 NC_008593.1 identified by match to protein family HMM PF02588; hypothetical protein 389384 4541873 NT01CX_1269 Clostridium novyi NT hypothetical protein YP_877352.1 388521 D 386415 CDS YP_877353.1 118444460 4540059 389481..390167 1 NC_008593.1 identified by match to protein family HMM PF00005; cell division ATP-binding protein ftsE 390167 ftsE 4540059 ftsE Clostridium novyi NT cell division ATP-binding protein ftsE YP_877353.1 389481 D 386415 CDS YP_877354.1 118444623 4539590 390157..391047 1 NC_008593.1 identified by match to protein family HMM PF02687; cell division protein ftsX 391047 4539590 NT01CX_1271 Clostridium novyi NT cell division protein ftsX YP_877354.1 390157 D 386415 CDS YP_877355.1 118444338 4540562 391183..392439 1 NC_008593.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 392439 4540562 NT01CX_1272 Clostridium novyi NT carboxyl-terminal protease YP_877355.1 391183 D 386415 CDS YP_877356.1 118443075 4541796 392468..393757 1 NC_008593.1 identified by match to protein family HMM PF00595; PDZ domain-containing protein 393757 4541796 NT01CX_1273 Clostridium novyi NT PDZ domain-containing protein YP_877356.1 392468 D 386415 CDS YP_877357.1 118443519 4541826 393898..395871 1 NC_008593.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 395871 uvrB 4541826 uvrB Clostridium novyi NT excinuclease ABC subunit B YP_877357.1 393898 D 386415 CDS YP_877358.1 118444151 4541235 395929..398751 1 NC_008593.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 398751 uvrA 4541235 uvrA Clostridium novyi NT excinuclease ABC subunit A YP_877358.1 395929 D 386415 CDS YP_877359.1 118444557 4540396 398831..399259 1 NC_008593.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 399259 4540396 NT01CX_1276 Clostridium novyi NT FHA domain-containing protein YP_877359.1 398831 D 386415 CDS YP_877360.1 118443666 4540996 399280..400500 1 NC_008593.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 400500 4540996 NT01CX_1277 Clostridium novyi NT cell cycle protein FtsW YP_877360.1 399280 D 386415 CDS YP_877361.1 118444081 4539940 400493..401911 1 NC_008593.1 identified by match to protein family HMM PF00905; penicillin-binding protein 401911 4539940 NT01CX_1278 Clostridium novyi NT penicillin-binding protein YP_877361.1 400493 D 386415 CDS YP_877362.1 118444380 4541244 401901..401993 1 NC_008593.1 hypothetical protein 401993 4541244 NT01CX_1279 Clostridium novyi NT hypothetical protein YP_877362.1 401901 D 386415 CDS YP_877363.1 118443257 4540342 401990..402592 1 NC_008593.1 identified by match to protein family HMM PF04307; membrane-bound metal-dependent hydrolase 402592 4540342 NT01CX_1280 Clostridium novyi NT membrane-bound metal-dependent hydrolase YP_877363.1 401990 D 386415 CDS YP_877364.1 118443548 4539874 402613..404478 1 NC_008593.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 404478 uvrC 4539874 uvrC Clostridium novyi NT excinuclease ABC subunit C YP_877364.1 402613 D 386415 CDS YP_877365.1 118443850 4540864 404493..405227 1 NC_008593.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811; hydrolase 405227 4540864 NT01CX_1282 Clostridium novyi NT hydrolase YP_877365.1 404493 D 386415 CDS YP_877366.1 118443439 4541958 405282..406205 1 NC_008593.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 406205 murB 4541958 murB Clostridium novyi NT UDP-N-acetylenolpyruvoylglucosamine reductase YP_877366.1 405282 D 386415 CDS YP_877367.1 118443876 4541690 406327..407211 1 NC_008593.1 identified by match to protein family HMM PF03668; hypothetical protein 407211 4541690 NT01CX_1284 Clostridium novyi NT hypothetical protein YP_877367.1 406327 D 386415 CDS YP_877368.1 118444050 4541186 407208..408545 1 NC_008593.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 408545 4541186 NT01CX_1285 Clostridium novyi NT hypothetical protein YP_877368.1 407208 D 386415 CDS YP_877369.1 118443048 4541773 408552..409505 1 NC_008593.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 409505 4541773 NT01CX_1286 Clostridium novyi NT hypothetical protein YP_877369.1 408552 D 386415 CDS YP_877370.1 118443077 4541798 409516..410811 1 NC_008593.1 similar to B. subtilis ytoI; identified by match to protein family HMM PF00571; match to protein family HMM PF07085; hypothetical protein 410811 4541798 NT01CX_1287 Clostridium novyi NT hypothetical protein YP_877370.1 409516 D 386415 CDS YP_877371.1 118443512 4541821 411027..412046 1 NC_008593.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 412046 asnA 4541821 asnA Clostridium novyi NT asparagine synthetase AsnA YP_877371.1 411027 D 386415 CDS YP_877372.1 118443810 4540813 412290..412973 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 412973 4540813 NT01CX_1289 Clostridium novyi NT DNA-binding response regulator YP_877372.1 412290 D 386415 CDS YP_877373.1 118444450 4540051 412978..414393 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 414393 4540051 NT01CX_1290 Clostridium novyi NT two-component sensor histidine kinase YP_877373.1 412978 D 386415 CDS YP_877374.1 118443419 4541730 414478..415320 1 NC_008593.1 hypothetical protein 415320 4541730 NT01CX_1291 Clostridium novyi NT hypothetical protein YP_877374.1 414478 D 386415 CDS YP_877375.1 118443966 4540757 415372..416376 1 NC_008593.1 iron(III) ABC transporter 416376 4540757 NT01CX_1292 Clostridium novyi NT iron(III) ABC transporter YP_877375.1 415372 D 386415 CDS YP_877376.1 118444722 4541520 416412..417764 1 NC_008593.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 417764 glpT 4541520 glpT Clostridium novyi NT glycerol-3-phosphate transporter YP_877376.1 416412 D 386415 CDS YP_877377.1 118442890 4541973 417966..418820 1 NC_008593.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 418820 4541973 NT01CX_1294 Clostridium novyi NT pyridoxal biosynthesis lyase PdxS YP_877377.1 417966 D 386415 CDS YP_877378.1 118443201 4541489 418972..421905 1 NC_008593.1 identified by match to protein family HMM PF01752; match to protein family HMM PF04151; collagenase 421905 4541489 NT01CX_1295 Clostridium novyi NT collagenase YP_877378.1 418972 D 386415 CDS YP_877379.1 118443745 4541372 422141..425644 1 NC_008593.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 425644 dnaE 4541372 dnaE Clostridium novyi NT DNA polymerase III DnaE YP_877379.1 422141 D 386415 CDS YP_877380.1 118443486 4540197 425904..426863 1 NC_008593.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 426863 4540197 NT01CX_1297 Clostridium novyi NT 6-phosphofructokinase YP_877380.1 425904 D 386415 CDS YP_877381.1 118443979 4540369 426911..428332 1 NC_008593.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 428332 4540369 NT01CX_1298 Clostridium novyi NT pyruvate kinase YP_877381.1 426911 D 386415 CDS YP_877382.1 118443042 4539660 428564..429982 1 NC_008593.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 429982 rumA 4539660 rumA Clostridium novyi NT 23S rRNA (uracil-5-)-methyltransferase RumA YP_877382.1 428564 D 386415 CDS YP_877383.1 118443186 4541474 430048..433623 1 NC_008593.1 DNA modification methylase 433623 4541474 NT01CX_1300 Clostridium novyi NT DNA modification methylase YP_877383.1 430048 D 386415 CDS YP_877384.1 118443614 4539989 433635..436760 1 NC_008593.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; Snf2/Rad54 family helicase 436760 4539989 NT01CX_1301 Clostridium novyi NT Snf2/Rad54 family helicase YP_877384.1 433635 D 386415 CDS YP_877385.1 118444272 4541650 437118..437990 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 437990 4541650 NT01CX_1302 Clostridium novyi NT ABC transporter ATP-binding protein YP_877385.1 437118 D 386415 CDS YP_877386.1 118443649 4539763 437980..439200 1 NC_008593.1 hypothetical protein 439200 4539763 NT01CX_1303 Clostridium novyi NT hypothetical protein YP_877386.1 437980 D 386415 CDS YP_877387.1 118444441 4540146 439238..440449 1 NC_008593.1 hypothetical protein 440449 4540146 NT01CX_1304 Clostridium novyi NT hypothetical protein YP_877387.1 439238 D 386415 CDS YP_877388.1 118443509 4541819 440549..441787 1 NC_008593.1 lipoprotein 441787 4541819 NT01CX_1305 Clostridium novyi NT lipoprotein YP_877388.1 440549 D 386415 CDS YP_877389.1 118444522 4540154 441828..442394 1 NC_008593.1 identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor 442394 4540154 NT01CX_1306 Clostridium novyi NT ECF subfamily RNA polymerase sigma factor YP_877389.1 441828 D 386415 CDS YP_877390.1 118443887 4540429 442366..443127 1 NC_008593.1 hypothetical protein 443127 4540429 NT01CX_1307 Clostridium novyi NT hypothetical protein YP_877390.1 442366 D 386415 CDS YP_877391.1 118443454 4541893 443139..444020 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 444020 4541893 NT01CX_1308 Clostridium novyi NT ABC transporter ATP-binding protein YP_877391.1 443139 D 386415 CDS YP_877392.1 118444312 4540797 444024..445262 1 NC_008593.1 hypothetical protein 445262 4540797 NT01CX_1309 Clostridium novyi NT hypothetical protein YP_877392.1 444024 D 386415 CDS YP_877393.1 118443740 4541368 445495..446436 1 NC_008593.1 identified by match to protein family HMM PF00005; multidrug ABC transporter ATPase 446436 4541368 NT01CX_1310 Clostridium novyi NT multidrug ABC transporter ATPase YP_877393.1 445495 D 386415 CDS YP_877394.1 118443299 4541919 446446..447582 1 NC_008593.1 identified by match to protein family HMM PF01061; permease 447582 4541919 NT01CX_1311 Clostridium novyi NT permease YP_877394.1 446446 D 386415 CDS YP_877395.1 118443038 4539656 447584..448690 1 NC_008593.1 identified by match to protein family HMM PF01061; ABC transporter permease 448690 4539656 NT01CX_1312 Clostridium novyi NT ABC transporter permease YP_877395.1 447584 D 386415 CDS YP_877396.1 118444145 4541229 448708..449802 1 NC_008593.1 identified by match to protein family HMM PF02518; histidine kinase-like ATPase 449802 4541229 NT01CX_1313 Clostridium novyi NT histidine kinase-like ATPase YP_877396.1 448708 D 386415 CDS YP_877397.1 118443997 4540631 449774..450403 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator 450403 4540631 NT01CX_1314 Clostridium novyi NT response regulator YP_877397.1 449774 D 386415 CDS YP_877398.1 118443558 4539882 451039..452394 1 NC_008593.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 452394 brnQ 4539882 brnQ Clostridium novyi NT branched-chain amino acid transport system II carrier protein YP_877398.1 451039 D 386415 CDS YP_877399.1 118444417 4541218 452510..453271 1 NC_008593.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase 453271 aroD 4541218 aroD Clostridium novyi NT 3-dehydroquinate dehydratase YP_877399.1 452510 D 386415 CDS YP_877400.1 118444013 4540646 complement(453351..454691) 1 NC_008593.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 454691 4540646 NT01CX_1317 Clostridium novyi NT glycerol-3-phosphate transporter YP_877400.1 453351 R 386415 CDS YP_877401.1 118444240 4541533 complement(454856..455875) 1 NC_008593.1 ABC transporter substrate-binding protein 455875 4541533 NT01CX_1318 Clostridium novyi NT ABC transporter substrate-binding protein YP_877401.1 454856 R 386415 CDS YP_877402.1 118442941 4539612 complement(455856..456638) 1 NC_008593.1 hypothetical protein 456638 4539612 NT01CX_1319 Clostridium novyi NT hypothetical protein YP_877402.1 455856 R 386415 CDS YP_877403.1 118444656 4539789 complement(456666..458039) 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 458039 4539789 NT01CX_1320 Clostridium novyi NT two-component sensor histidine kinase YP_877403.1 456666 R 386415 CDS YP_877404.1 118444074 4539934 complement(458029..458712) 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 458712 4539934 NT01CX_1321 Clostridium novyi NT two-component response regulator YP_877404.1 458029 R 386415 CDS YP_877405.1 118443820 4540820 458920..459426 1 NC_008593.1 identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 459426 4540820 NT01CX_1322 Clostridium novyi NT membrane flanked domain-containing protein YP_877405.1 458920 D 386415 CDS YP_877406.1 118443286 4541909 459419..460888 1 NC_008593.1 identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 460888 4541909 NT01CX_1323 Clostridium novyi NT membrane flanked domain-containing protein YP_877406.1 459419 D 386415 CDS YP_877407.1 118443185 4541473 460914..461618 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 461618 4541473 NT01CX_1324 Clostridium novyi NT two-component response regulator YP_877407.1 460914 D 386415 CDS YP_877408.1 118443607 4539983 461615..463072 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 463072 4539983 NT01CX_1325 Clostridium novyi NT two-component sensor histidine kinase YP_877408.1 461615 D 386415 CDS YP_877409.1 118443196 4541484 463088..464203 1 NC_008593.1 hypothetical protein 464203 4541484 NT01CX_1326 Clostridium novyi NT hypothetical protein YP_877409.1 463088 D 386415 CDS YP_877410.1 118444653 4539786 464594..466330 1 NC_008593.1 identified by match to protein family HMM PF00282; L-2,4-diaminobutyrate decarboxylase 466330 4539786 NT01CX_1327 Clostridium novyi NT L-2,4-diaminobutyrate decarboxylase YP_877410.1 464594 D 386415 CDS YP_877411.1 118444225 4539696 466505..467311 1 NC_008593.1 similar to yxkH B. subtilis; identified by match to protein family HMM PF01522; xylanase/chitin deacetilase 467311 4539696 NT01CX_1328 Clostridium novyi NT xylanase/chitin deacetilase YP_877411.1 466505 D 386415 CDS YP_877412.1 118443435 4541956 467726..468472 1 NC_008593.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 468472 cbiM 4541956 cbiM Clostridium novyi NT cobalt transport protein CbiM YP_877412.1 467726 D 386415 CDS YP_877413.1 118442925 4540926 468474..468794 1 NC_008593.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 468794 cbiN 4540926 cbiN Clostridium novyi NT cobalt transport protein CbiN YP_877413.1 468474 D 386415 CDS YP_877414.1 118444391 4541252 468794..469558 1 NC_008593.1 identified by match to protein family HMM PF02361; cobalt transport protein 469558 cbiQ 4541252 cbiQ Clostridium novyi NT cobalt transport protein YP_877414.1 468794 D 386415 CDS YP_877415.1 118443947 4540283 469643..470479 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01166; cobalt ABC transporter ATP-binding protein 470479 4540283 NT01CX_1332 Clostridium novyi NT cobalt ABC transporter ATP-binding protein YP_877415.1 469643 D 386415 CDS YP_877416.1 118442913 4540917 complement(470517..471827) 1 NC_008593.1 identified by match to protein family HMM PF00209; sodium-dependent amino acid transporter 471827 4540917 NT01CX_1333 Clostridium novyi NT sodium-dependent amino acid transporter YP_877416.1 470517 R 386415 CDS YP_877417.1 118443313 4540616 472093..472857 1 NC_008593.1 identified by match to protein family HMM PF00657; platelet activating factor acetylhydrolase-like protein 472857 4540616 NT01CX_1334 Clostridium novyi NT platelet activating factor acetylhydrolase-like protein YP_877417.1 472093 D 386415 CDS YP_877418.1 118444667 4539666 472871..473359 1 NC_008593.1 lipoprotein 473359 4539666 NT01CX_1335 Clostridium novyi NT lipoprotein YP_877418.1 472871 D 386415 CDS YP_877419.1 118443901 4540442 473410..474816 1 NC_008593.1 identified by match to protein family HMM PF03062; alginate O-acetylation protein 474816 algI 4540442 algI Clostridium novyi NT alginate O-acetylation protein YP_877419.1 473410 D 386415 CDS YP_877420.1 118443367 4541841 complement(474861..475316) 1 NC_008593.1 hypothetical protein 475316 4541841 NT01CX_1337 Clostridium novyi NT hypothetical protein YP_877420.1 474861 R 386415 CDS YP_877421.1 118443062 4541785 complement(475371..475823) 1 NC_008593.1 cell wall hydrolase; cortex lytic enzyme 475823 4541785 NT01CX_1338 Clostridium novyi NT cell wall hydrolase; cortex lytic enzyme YP_877421.1 475371 R 386415 CDS YP_877422.1 118444232 4541526 475991..476524 1 NC_008593.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 476524 lepB 4541526 lepB Clostridium novyi NT signal peptidase I YP_877422.1 475991 D 386415 CDS YP_877423.1 118443590 4541885 476954..478789 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein ftsH 478789 4541885 NT01CX_1340 Clostridium novyi NT cell division protein ftsH YP_877423.1 476954 D 386415 CDS YP_877424.1 118443886 4540428 478770..480899 1 NC_008593.1 ATP-dependent DNA helicase 480899 4540428 NT01CX_1341 Clostridium novyi NT ATP-dependent DNA helicase YP_877424.1 478770 D 386415 CDS YP_877425.1 118443484 4540195 481326..482495 1 NC_008593.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 482495 trpB 4540195 trpB Clostridium novyi NT tryptophan synthase subunit beta YP_877425.1 481326 D 386415 CDS YP_877426.1 118443091 4541751 482659..484098 1 NC_008593.1 ISBma2, transposase 484098 4541751 NT01CX_1343 Clostridium novyi NT ISBma2, transposase YP_877426.1 482659 D 386415 CDS YP_877427.1 118443384 4541284 complement(484170..485273) 1 NC_008593.1 hypothetical protein 485273 4541284 NT01CX_1344 Clostridium novyi NT hypothetical protein YP_877427.1 484170 R 386415 CDS YP_877428.1 118443199 4541487 complement(485402..486577) 1 NC_008593.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 486577 4541487 NT01CX_1345 Clostridium novyi NT cation efflux family protein YP_877428.1 485402 R 386415 CDS YP_877429.1 118443588 4541884 486765..488066 1 NC_008593.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 488066 4541884 NT01CX_1346 Clostridium novyi NT aminopeptidase 2 YP_877429.1 486765 D 386415 CDS YP_877430.1 118444266 4541644 488255..489433 1 NC_008593.1 hypothetical protein 489433 4541644 NT01CX_1347 Clostridium novyi NT hypothetical protein YP_877430.1 488255 D 386415 CDS YP_877431.1 118444662 4539795 489562..490230 1 NC_008593.1 hypothetical protein 490230 4539795 NT01CX_1348 Clostridium novyi NT hypothetical protein YP_877431.1 489562 D 386415 CDS YP_877432.1 118443359 4541834 490365..491834 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 491834 4541834 NT01CX_1349 Clostridium novyi NT methyl-accepting chemotaxis protein YP_877432.1 490365 D 386415 CDS YP_877433.1 118443833 4540850 491904..492107 1 NC_008593.1 hypothetical protein 492107 4540850 NT01CX_1350 Clostridium novyi NT hypothetical protein YP_877433.1 491904 D 386415 CDS YP_877434.1 118444368 4540455 492132..492602 1 NC_008593.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 492602 4540455 NT01CX_1351 Clostridium novyi NT phosphoesterase YP_877434.1 492132 D 386415 CDS YP_877435.1 118443019 4540592 493004..494302 1 NC_008593.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 494302 lysA 4540592 lysA Clostridium novyi NT diaminopimelate decarboxylase YP_877435.1 493004 D 386415 CDS YP_877436.1 118442969 4539736 494492..503077 1 NC_008593.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; cyclic beta 1-2 glucan synthetase 503077 4539736 NT01CX_1353 Clostridium novyi NT cyclic beta 1-2 glucan synthetase YP_877436.1 494492 D 386415 CDS YP_877437.1 118444481 4539960 503414..503557 1 NC_008593.1 hypothetical protein 503557 4539960 NT01CX_1354 Clostridium novyi NT hypothetical protein YP_877437.1 503414 D 386415 CDS YP_877438.1 118443301 4541921 503689..504693 1 NC_008593.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 504693 trpS 4541921 trpS Clostridium novyi NT tryptophanyl-tRNA synthetase YP_877438.1 503689 D 386415 CDS YP_877439.1 118443719 4540505 complement(504821..505660) 1 NC_008593.1 hypothetical protein 505660 4540505 NT01CX_1356 Clostridium novyi NT hypothetical protein YP_877439.1 504821 R 386415 CDS YP_877440.1 118443527 4541928 complement(506020..506907) 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 506907 4541928 NT01CX_1357 Clostridium novyi NT Cof family protein YP_877440.1 506020 R 386415 CDS YP_877441.1 118443838 4540854 complement(506935..507747) 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 507747 4540854 NT01CX_1358 Clostridium novyi NT Cof family protein YP_877441.1 506935 R 386415 CDS YP_877442.1 118443147 4541699 508011..509600 1 NC_008593.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 509600 prfC 4541699 prfC Clostridium novyi NT peptide chain release factor 3 YP_877442.1 508011 D 386415 CDS YP_877443.1 118443003 4540580 509836..510402 1 NC_008593.1 membrane spanning protein 510402 4540580 NT01CX_1360 Clostridium novyi NT membrane spanning protein YP_877443.1 509836 D 386415 CDS YP_877444.1 118443736 4541365 510514..511611 1 NC_008593.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254; signal transduction protein 511611 4541365 NT01CX_1361 Clostridium novyi NT signal transduction protein YP_877444.1 510514 D 386415 CDS YP_877445.1 118443288 4541911 511767..512840 1 NC_008593.1 identified by match to protein family HMM PF04326; ATPase AAA 512840 4541911 NT01CX_1362 Clostridium novyi NT ATPase AAA YP_877445.1 511767 D 386415 CDS YP_877446.1 118443034 4539652 512951..513361 1 NC_008593.1 hypothetical protein 513361 4539652 NT01CX_1363 Clostridium novyi NT hypothetical protein YP_877446.1 512951 D 386415 CDS YP_877447.1 118443768 4541043 513731..514957 1 NC_008593.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 514957 tyrS 4541043 tyrS Clostridium novyi NT tyrosyl-tRNA synthetase YP_877447.1 513731 D 386415 CDS YP_877448.1 118444339 4540563 515064..516710 1 NC_008593.1 hypothetical protein 516710 4540563 NT01CX_1365 Clostridium novyi NT hypothetical protein YP_877448.1 515064 D 386415 CDS YP_877449.1 118443083 4541802 516732..517004 1 NC_008593.1 flagella-associated protein 517004 4541802 NT01CX_1366 Clostridium novyi NT flagella-associated protein YP_877449.1 516732 D 386415 CDS YP_877450.1 118444070 4541200 517011..517694 1 NC_008593.1 identified by match to protein family HMM PF00149; phoshohydrolase 517694 4541200 NT01CX_1367 Clostridium novyi NT phoshohydrolase YP_877450.1 517011 D 386415 CDS YP_877451.1 118444547 4540389 complement(517771..518631) 1 NC_008593.1 identified by match to protein family HMM PF04460; hypothetical protein 518631 4540389 NT01CX_1368 Clostridium novyi NT hypothetical protein YP_877451.1 517771 R 386415 CDS YP_877452.1 118444636 4539600 518807..519595 1 NC_008593.1 identified by match to protein family HMM PF04607; GTP pyrophosphokinase family protein 519595 4539600 NT01CX_1369 Clostridium novyi NT GTP pyrophosphokinase family protein YP_877452.1 518807 D 386415 CDS YP_877453.1 118443127 4541740 complement(519696..521135) 1 NC_008593.1 ISBma2, transposase 521135 4541740 NT01CX_1370 Clostridium novyi NT ISBma2, transposase YP_877453.1 519696 R 386415 CDS YP_877454.1 118443325 4540626 complement(521193..521285) 1 NC_008593.1 hypothetical protein 521285 4540626 NT01CX_1371 Clostridium novyi NT hypothetical protein YP_877454.1 521193 R 386415 CDS YP_877455.1 118443863 4541679 complement(521315..523753) 1 NC_008593.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 523753 leuS 4541679 leuS Clostridium novyi NT leucyl-tRNA synthetase YP_877455.1 521315 R 386415 CDS YP_877456.1 118443587 4541883 524220..525383 1 NC_008593.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 525383 rpsA 4541883 rpsA Clostridium novyi NT 30S ribosomal protein S1 YP_877456.1 524220 D 386415 CDS YP_877457.1 118444494 4539913 complement(525621..526130) 1 NC_008593.1 hypothetical protein 526130 4539913 NT01CX_1375 Clostridium novyi NT hypothetical protein YP_877457.1 525621 R 386415 CDS YP_877458.1 118443108 4541765 complement(526147..526746) 1 NC_008593.1 identified by match to protein family HMM PF00226; molecular chaperone 526746 4541765 NT01CX_1376 Clostridium novyi NT molecular chaperone YP_877458.1 526147 R 386415 CDS YP_877459.1 118443639 4541867 complement(526730..527581) 1 NC_008593.1 similar to Thermotoga maritima; hypothetical protein 527581 4541867 NT01CX_1377 Clostridium novyi NT hypothetical protein YP_877459.1 526730 R 386415 CDS YP_877460.1 118443673 4541002 complement(527610..528149) 1 NC_008593.1 identified by match to protein family HMM PF01928; adenylate cyclase 528149 4541002 NT01CX_1378 Clostridium novyi NT adenylate cyclase YP_877460.1 527610 R 386415 CDS YP_877461.1 118444448 4540049 528263..529309 1 NC_008593.1 hypothetical protein 529309 4540049 NT01CX_1379 Clostridium novyi NT hypothetical protein YP_877461.1 528263 D 386415 CDS YP_877462.1 118442858 4541985 complement(529387..530313) 1 NC_008593.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 530313 4541985 NT01CX_1380 Clostridium novyi NT fructose-1,6-bisphosphate aldolase YP_877462.1 529387 R 386415 CDS YP_877463.1 118443372 4541845 complement(530865..531545) 1 NC_008593.1 identified by match to protein family HMM PF04239; hypothetical protein 531545 4541845 NT01CX_1381 Clostridium novyi NT hypothetical protein YP_877463.1 530865 R 386415 CDS YP_877464.1 118444126 4540977 531670..533328 1 NC_008593.1 identified by match to protein family HMM PF00485; phosphoribulokinase family protein 533328 4540977 NT01CX_1382 Clostridium novyi NT phosphoribulokinase family protein YP_877464.1 531670 D 386415 CDS YP_877465.1 118444650 4539784 533423..533752 1 NC_008593.1 hypothetical protein 533752 4539784 NT01CX_1383 Clostridium novyi NT hypothetical protein YP_877465.1 533423 D 386415 CDS YP_877466.1 118443240 4540330 complement(533771..534283) 1 NC_008593.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 534283 pssA 4540330 pssA Clostridium novyi NT CDP-diacylglycerol--serine O-phosphatidyltransferase YP_877466.1 533771 R 386415 CDS YP_877467.1 118443477 4540188 534447..534875 1 NC_008593.1 identified by match to protein family HMM PF00571; hypothetical protein 534875 4540188 NT01CX_1385 Clostridium novyi NT hypothetical protein YP_877467.1 534447 D 386415 CDS YP_877468.1 118443029 4539647 535096..535998 1 NC_008593.1 similar to YegS from E. coli; lipid kinase 535998 4539647 NT01CX_1386 Clostridium novyi NT lipid kinase YP_877468.1 535096 D 386415 CDS YP_877469.1 118443533 4541932 536049..536699 1 NC_008593.1 hypothetical protein 536699 4541932 NT01CX_1387 Clostridium novyi NT hypothetical protein YP_877469.1 536049 D 386415 CDS YP_877470.1 118444041 4540668 complement(536700..538574) 1 NC_008593.1 identified by match to protein family HMM PF04055; hypothetical protein 538574 4540668 NT01CX_1388 Clostridium novyi NT hypothetical protein YP_877470.1 536700 R 386415 CDS YP_877471.1 118444599 4540099 539088..540350 1 NC_008593.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; magnesium transporter 540350 4540099 NT01CX_1389 Clostridium novyi NT magnesium transporter YP_877471.1 539088 D 386415 CDS YP_877472.1 118443217 4539634 540482..541207 1 NC_008593.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; spore-cortex-lytic enzyme 541207 4539634 NT01CX_1390 Clostridium novyi NT spore-cortex-lytic enzyme YP_877472.1 540482 D 386415 CDS YP_877473.1 118443764 4541039 541592..542203 1 NC_008593.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 542203 4541039 NT01CX_1391 Clostridium novyi NT serine acetyltransferase YP_877473.1 541592 D 386415 CDS YP_877474.1 118444366 4540453 542169..543152 1 NC_008593.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 543152 4540453 NT01CX_1392 Clostridium novyi NT iron-sulfur cluster-binding protein YP_877474.1 542169 D 386415 CDS YP_877475.1 118442940 4539611 543192..543893 1 NC_008593.1 identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 543893 4539611 NT01CX_1393 Clostridium novyi NT 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_877475.1 543192 D 386415 CDS YP_877476.1 118444307 4540793 543906..544529 1 NC_008593.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 544529 4540793 NT01CX_1394 Clostridium novyi NT endonuclease III YP_877476.1 543906 D 386415 CDS YP_877477.1 118444409 4541211 complement(544549..546408) 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase/response regulator 546408 4541211 NT01CX_1395 Clostridium novyi NT sensory box histidine kinase/response regulator YP_877477.1 544549 R 386415 CDS YP_877478.1 118444016 4540649 complement(546588..547628) 1 NC_008593.1 identified by match to protein family HMM PF05343; glutamyl aminopeptidase 547628 4540649 NT01CX_1396 Clostridium novyi NT glutamyl aminopeptidase YP_877478.1 546588 R 386415 CDS YP_877479.1 118443803 4541143 547750..549126 1 NC_008593.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501; vancomycin b-type resistance protein vanW 549126 4541143 NT01CX_1397 Clostridium novyi NT vancomycin b-type resistance protein vanW YP_877479.1 547750 D 386415 CDS YP_877480.1 118443531 4541930 549350..550174 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; cof family hydrolase 550174 4541930 NT01CX_1398 Clostridium novyi NT cof family hydrolase YP_877480.1 549350 D 386415 CDS YP_877481.1 118442992 4541087 550241..551251 1 NC_008593.1 identified by match to protein family HMM PF04055; spore photoproduct lyase 551251 4541087 NT01CX_1399 Clostridium novyi NT spore photoproduct lyase YP_877481.1 550241 D 386415 CDS YP_877482.1 118444087 4539945 551299..551781 1 NC_008593.1 identified by match to protein family HMM PF00588; RNA methyltransferase 551781 4539945 NT01CX_1400 Clostridium novyi NT RNA methyltransferase YP_877482.1 551299 D 386415 CDS YP_877483.1 118443350 4539862 551794..552627 1 NC_008593.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 552627 4539862 NT01CX_1401 Clostridium novyi NT degV family protein YP_877483.1 551794 D 386415 CDS YP_877484.1 118442956 4539724 552770..554137 1 NC_008593.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 554137 rpoN 4539724 rpoN Clostridium novyi NT RNA polymerase factor sigma-54 YP_877484.1 552770 D 386415 CDS YP_877485.1 118444190 4541320 554352..555401 1 NC_008593.1 identified by match to protein family HMM PF04198; transcriptional regulator 555401 4541320 NT01CX_1403 Clostridium novyi NT transcriptional regulator YP_877485.1 554352 D 386415 CDS YP_877486.1 118443583 4541881 555463..556467 1 NC_008593.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 556467 4541881 NT01CX_1404 Clostridium novyi NT glyceraldehyde-3-phosphate dehydrogenase, type I YP_877486.1 555463 D 386415 CDS YP_877487.1 118444589 4540091 556670..556789 1 NC_008593.1 hypothetical protein 556789 4540091 NT01CX_1405 Clostridium novyi NT hypothetical protein YP_877487.1 556670 D 386415 CDS YP_877488.1 118443244 4540334 556979..558418 1 NC_008593.1 ISBma2, transposase 558418 4540334 NT01CX_1406 Clostridium novyi NT ISBma2, transposase YP_877488.1 556979 D 386415 CDS YP_877489.1 118443537 4541936 558686..559807 1 NC_008593.1 identified by match to protein family HMM PF02608; lipoprotein 559807 4541936 NT01CX_1407 Clostridium novyi NT lipoprotein YP_877489.1 558686 D 386415 CDS YP_877490.1 118444107 4540042 559922..561487 1 NC_008593.1 identified by match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein 561487 4540042 NT01CX_1408 Clostridium novyi NT sugar ABC transporter ATP-binding protein YP_877490.1 559922 D 386415 CDS YP_877491.1 118443933 4540271 561495..562571 1 NC_008593.1 identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 562571 4540271 NT01CX_1409 Clostridium novyi NT branched chain amino acid ABC transporter permease YP_877491.1 561495 D 386415 CDS YP_877492.1 118444486 4539965 562564..563481 1 NC_008593.1 identified by match to protein family HMM PF02653; ABC transporter permease 563481 4539965 NT01CX_1410 Clostridium novyi NT ABC transporter permease YP_877492.1 562564 D 386415 CDS YP_877493.1 118442874 4541997 563798..564994 1 NC_008593.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 564994 pgk 4541997 pgk Clostridium novyi NT phosphoglycerate kinase YP_877493.1 563798 D 386415 CDS YP_877494.1 118443388 4541288 565115..565867 1 NC_008593.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 565867 tpiA 4541288 tpiA Clostridium novyi NT triosephosphate isomerase YP_877494.1 565115 D 386415 CDS YP_877495.1 118444017 4540650 565940..567475 1 NC_008593.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 567475 gpmI 4540650 gpmI Clostridium novyi NT phosphoglyceromutase YP_877495.1 565940 D 386415 CDS YP_877496.1 118444579 4540122 567589..568890 1 NC_008593.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 568890 eno 4540122 eno Clostridium novyi NT phosphopyruvate hydratase YP_877496.1 567589 D 386415 CDS YP_877497.1 118444012 4540645 569082..569312 1 NC_008593.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 569312 secG 4540645 secG Clostridium novyi NT preprotein translocase subunit SecG YP_877497.1 569082 D 386415 CDS YP_877498.1 118444470 4539952 569528..571546 1 NC_008593.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 571546 hppA 4539952 hppA Clostridium novyi NT membrane-bound proton-translocating pyrophosphatase YP_877498.1 569528 D 386415 CDS YP_877499.1 118442907 4540913 571795..574032 1 NC_008593.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 574032 4540913 NT01CX_1417 Clostridium novyi NT ribonuclease R YP_877499.1 571795 D 386415 CDS YP_877500.1 118443378 4541278 574164..574637 1 NC_008593.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 574637 smpB 4541278 smpB Clostridium novyi NT SsrA-binding protein YP_877500.1 574164 D 386415 CDS YP_877501.1 118444191 4541321 576489..577844 1 NC_008593.1 DNA repair ATPase 577844 4541321 NT01CX_1420 Clostridium novyi NT DNA repair ATPase YP_877501.1 576489 D 386415 CDS YP_877502.1 118444678 4539677 577868..579391 1 NC_008593.1 DNA repair ATPase 579391 4539677 NT01CX_1421 Clostridium novyi NT DNA repair ATPase YP_877502.1 577868 D 386415 CDS YP_877503.1 118443742 4541370 579439..579633 1 NC_008593.1 hypothetical protein 579633 4541370 NT01CX_1422 Clostridium novyi NT hypothetical protein YP_877503.1 579439 D 386415 CDS YP_877504.1 118443291 4541913 580801..581445 1 NC_008593.1 identified by match to protein family HMM PF00376; S-adenosylmethionine-dependent methyltransferase 581445 4541913 NT01CX_1423 Clostridium novyi NT S-adenosylmethionine-dependent methyltransferase YP_877504.1 580801 D 386415 CDS YP_877505.1 118444454 4540054 581627..583270 1 NC_008593.1 5-methylcytosine-specific restriction enzyme B 583270 4540054 NT01CX_1424 Clostridium novyi NT 5-methylcytosine-specific restriction enzyme B YP_877505.1 581627 D 386415 CDS YP_877506.1 118444185 4541315 583358..584263 1 NC_008593.1 endonuclease 584263 4541315 NT01CX_1425 Clostridium novyi NT endonuclease YP_877506.1 583358 D 386415 CDS YP_877507.1 118443173 4540314 584268..585545 1 NC_008593.1 hypothetical protein 585545 4540314 NT01CX_1426 Clostridium novyi NT hypothetical protein YP_877507.1 584268 D 386415 CDS YP_877508.1 118443329 4540629 585640..586605 1 NC_008593.1 identified by match to protein family HMM PF01207; transcriptional regulator 586605 4540629 NT01CX_1427 Clostridium novyi NT transcriptional regulator YP_877508.1 585640 D 386415 CDS YP_877509.1 118444034 4540663 586826..587980 1 NC_008593.1 hypothetical protein 587980 4540663 NT01CX_1428 Clostridium novyi NT hypothetical protein YP_877509.1 586826 D 386415 CDS YP_877510.1 118444671 4539670 588126..588830 1 NC_008593.1 identified by match to protein family HMM PF00005; antibiotic transport ATP-binding protein spaF/mutF 588830 4539670 NT01CX_1429 Clostridium novyi NT antibiotic transport ATP-binding protein spaF/mutF YP_877510.1 588126 D 386415 CDS YP_877511.1 118443332 4539846 588833..589582 1 NC_008593.1 antibiotic permease spaE/mutE 589582 4539846 NT01CX_1430 Clostridium novyi NT antibiotic permease spaE/mutE YP_877511.1 588833 D 386415 CDS YP_877512.1 118443593 4539972 589582..590358 1 NC_008593.1 antibiotic transport-associated permease spaG/mutG 590358 4539972 NT01CX_1431 Clostridium novyi NT antibiotic transport-associated permease spaG/mutG YP_877512.1 589582 D 386415 CDS YP_877513.1 118444264 4541642 590414..591076 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; subtilin biosynthesis regulatory protein spaR 591076 4541642 NT01CX_1432 Clostridium novyi NT subtilin biosynthesis regulatory protein spaR YP_877513.1 590414 D 386415 CDS YP_877514.1 118444374 4540461 591064..592425 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; subtilin biosynthesis sensor protein spaK 592425 4540461 NT01CX_1433 Clostridium novyi NT subtilin biosynthesis sensor protein spaK YP_877514.1 591064 D 386415 CDS YP_877515.1 118443757 4541382 592745..593284 1 NC_008593.1 hypothetical protein 593284 4541382 NT01CX_1434 Clostridium novyi NT hypothetical protein YP_877515.1 592745 D 386415 CDS YP_877516.1 118443544 4541942 593482..595476 1 NC_008593.1 hypothetical protein 595476 4541942 NT01CX_1435 Clostridium novyi NT hypothetical protein YP_877516.1 593482 D 386415 CDS YP_877517.1 118442986 4541084 595672..595773 1 NC_008593.1 hypothetical protein 595773 4541084 NT01CX_1436 Clostridium novyi NT hypothetical protein YP_877517.1 595672 D 386415 CDS YP_877518.1 118443275 4541066 596120..596509 1 NC_008593.1 identified by match to protein family HMM PF05690; thiazole biosynthesis protein ThiG 596509 thiG 4541066 thiG Clostridium novyi NT thiazole biosynthesis protein ThiG YP_877518.1 596120 D 386415 CDS YP_877519.1 118443567 4539891 596521..597681 1 NC_008593.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 597681 thiH 4539891 thiH Clostridium novyi NT thiamine biosynthesis protein ThiH YP_877519.1 596521 D 386415 CDS YP_877520.1 118443815 4540815 597871..599052 1 NC_008593.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside permease NupC 599052 4540815 NT01CX_1439 Clostridium novyi NT nucleoside permease NupC YP_877520.1 597871 D 386415 CDS YP_877521.1 118444660 4539793 599216..599905 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase family protein 599905 4539793 NT01CX_1440 Clostridium novyi NT RNA pseudouridylate synthase family protein YP_877521.1 599216 D 386415 CDS YP_877522.1 118442999 4540576 600273..600860 1 NC_008593.1 identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 600860 4540576 NT01CX_1441 Clostridium novyi NT proton-coupled thiamine transporter YuaJ YP_877522.1 600273 D 386415 CDS YP_877523.1 118443346 4539859 601084..601599 1 NC_008593.1 identified by match to protein family HMM PF00583; enzyme-regulator fusion protein 601599 4539859 NT01CX_1442 Clostridium novyi NT enzyme-regulator fusion protein YP_877523.1 601084 D 386415 CDS YP_877524.1 118443831 4540828 601744..602193 1 NC_008593.1 identified by match to protein family HMM PF00359; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 602193 4540828 NT01CX_1443 Clostridium novyi NT phosphotransferase system mannitol/fructose-specific IIA domain-containing protein YP_877524.1 601744 D 386415 CDS YP_877525.1 118444493 4539912 602388..603791 1 NC_008593.1 identified by match to protein family HMM TIGR01167; hypothetical protein 603791 4539912 NT01CX_1444 Clostridium novyi NT hypothetical protein YP_877525.1 602388 D 386415 CDS YP_877526.1 118443023 4539642 603796..604509 1 NC_008593.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; NPQTN cell wall surface anchor protein 604509 4539642 NT01CX_1445 Clostridium novyi NT NPQTN cell wall surface anchor protein YP_877526.1 603796 D 386415 CDS YP_877527.1 118443653 4539767 604589..605479 1 NC_008593.1 identified by match to protein family HMM PF01497; iron (III) dicitrate-binding periplasmic protein 605479 4539767 NT01CX_1446 Clostridium novyi NT iron (III) dicitrate-binding periplasmic protein YP_877527.1 604589 D 386415 CDS YP_877528.1 118443942 4540279 605497..606495 1 NC_008593.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 606495 4540279 NT01CX_1447 Clostridium novyi NT iron compound ABC transporter permease YP_877528.1 605497 D 386415 CDS YP_877529.1 118444463 4540062 606498..607289 1 NC_008593.1 identified by match to protein family HMM PF00005; ferric enterobactin transport ATP-binding protein fepC 607289 4540062 NT01CX_1448 Clostridium novyi NT ferric enterobactin transport ATP-binding protein fepC YP_877529.1 606498 D 386415 CDS YP_877530.1 118442968 4539735 607313..607933 1 NC_008593.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 607933 4539735 NT01CX_1449 Clostridium novyi NT sortase YP_877530.1 607313 D 386415 CDS YP_877531.1 118443260 4541054 607961..609706 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug resistance protein 1 609706 cydD 4541054 cydD Clostridium novyi NT multidrug resistance protein 1 YP_877531.1 607961 D 386415 CDS YP_877532.1 118443442 4541960 609723..611384 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 611384 4541960 NT01CX_1451 Clostridium novyi NT ABC transporter YP_877532.1 609723 D 386415 CDS YP_877533.1 118444108 4540043 611561..611848 1 NC_008593.1 identified by match to protein family HMM PF02302; PTS system transporter subunit IIB 611848 4540043 NT01CX_1452 Clostridium novyi NT PTS system transporter subunit IIB YP_877533.1 611561 D 386415 CDS YP_877534.1 118443695 4540233 612035..613759 1 NC_008593.1 identified by match to protein family HMM PF00012; DNAk protein 613759 4540233 NT01CX_1453 Clostridium novyi NT DNAk protein YP_877534.1 612035 D 386415 CDS YP_877535.1 118443856 4540869 613782..614933 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 614933 4540869 NT01CX_1454 Clostridium novyi NT hypothetical protein YP_877535.1 613782 D 386415 CDS YP_877536.1 118444334 4540559 614967..616343 1 NC_008593.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00515; hypothetical protein 616343 4540559 NT01CX_1455 Clostridium novyi NT hypothetical protein YP_877536.1 614967 D 386415 CDS YP_877537.1 118444404 4541206 616718..617200 1 NC_008593.1 identified by match to protein family HMM PF01037; AsnC/Lrp family transcriptional regulator 617200 asnC 4541206 asnC Clostridium novyi NT AsnC/Lrp family transcriptional regulator YP_877537.1 616718 D 386415 CDS YP_877538.1 118443142 4541694 617197..618369 1 NC_008593.1 identified by match to protein family HMM PF00155; aspartate aminotransferase 618369 4541694 NT01CX_1457 Clostridium novyi NT aspartate aminotransferase YP_877538.1 617197 D 386415 CDS YP_877539.1 118443789 4541132 618547..621267 1 NC_008593.1 identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167; leucine rich repeat domain-containing protein 621267 4541132 NT01CX_1458 Clostridium novyi NT leucine rich repeat domain-containing protein YP_877539.1 618547 D 386415 CDS YP_877540.1 118444206 4539682 621356..626383 1 NC_008593.1 identified by match to protein family HMM PF00560; match to protein family HMM PF05031; match to protein family HMM TIGR01167; hypothetical protein 626383 4539682 NT01CX_1459 Clostridium novyi NT hypothetical protein YP_877540.1 621356 D 386415 CDS YP_877541.1 118443889 4540431 complement(626466..627905) 1 NC_008593.1 ISBma2, transposase 627905 4540431 NT01CX_1460 Clostridium novyi NT ISBma2, transposase YP_877541.1 626466 R 386415 CDS YP_877542.1 118444323 4540807 628245..629015 1 NC_008593.1 identified by match to protein family HMM PF00455; sugar metabolism transcriptional regulator 629015 4540807 NT01CX_1461 Clostridium novyi NT sugar metabolism transcriptional regulator YP_877542.1 628245 D 386415 CDS YP_877543.1 118442886 4541969 629053..630174 1 NC_008593.1 identified by match to protein family HMM PF01041; pleiotropic regulatory protein 630174 4541969 NT01CX_1462 Clostridium novyi NT pleiotropic regulatory protein YP_877543.1 629053 D 386415 CDS YP_877544.1 118444506 4539923 630286..631479 1 NC_008593.1 identified by match to protein family HMM PF01041; spore coat polysaccharide biosynthesis protein spsC 631479 spsC 4539923 spsC Clostridium novyi NT spore coat polysaccharide biosynthesis protein spsC YP_877544.1 630286 D 386415 CDS YP_877545.1 118442861 4541988 631661..632911 1 NC_008593.1 hypothetical protein 632911 4541988 NT01CX_1464 Clostridium novyi NT hypothetical protein YP_877545.1 631661 D 386415 CDS YP_877546.1 118443624 4541854 633213..633911 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 633911 4541854 NT01CX_1465 Clostridium novyi NT transcriptional regulator YP_877546.1 633213 D 386415 CDS YP_877547.1 118443424 4541947 633883..636024 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory transduction protein kinase 636024 4541947 NT01CX_1466 Clostridium novyi NT sensory transduction protein kinase YP_877547.1 633883 D 386415 CDS YP_877548.1 118443970 4540761 636196..636738 1 NC_008593.1 identified by match to protein family HMM PF02632; hypothetical protein 636738 4540761 NT01CX_1467 Clostridium novyi NT hypothetical protein YP_877548.1 636196 D 386415 CDS YP_877549.1 118444499 4539917 636854..637570 1 NC_008593.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 637570 bioD 4539917 bioD Clostridium novyi NT dithiobiotin synthetase YP_877549.1 636854 D 386415 CDS YP_877550.1 118443308 4540611 637576..638946 1 NC_008593.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 638946 bioA 4540611 bioA Clostridium novyi NT adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_877550.1 637576 D 386415 CDS YP_877551.1 118442896 4541978 638936..639889 1 NC_008593.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 639889 bioB 4541978 bioB Clostridium novyi NT biotin synthase YP_877551.1 638936 D 386415 CDS YP_877552.1 118444144 4541228 640120..641229 1 NC_008593.1 identified by match to protein family HMM PF04346; ethanolamine transporter 641229 4541228 NT01CX_1471 Clostridium novyi NT ethanolamine transporter YP_877552.1 640120 D 386415 CDS YP_877553.1 118444572 4540116 641226..643007 1 NC_008593.1 identified by match to protein family HMM PF00557; peptidase, M24 family protein 643007 4540116 NT01CX_1472 Clostridium novyi NT peptidase, M24 family protein YP_877553.1 641226 D 386415 CDS YP_877554.1 118443734 4540518 643628..645430 1 NC_008593.1 identified by match to protein family HMM PF01289; tetanolysin O 645430 4540518 NT01CX_1473 Clostridium novyi NT tetanolysin O YP_877554.1 643628 D 386415 CDS YP_877555.1 118443146 4541698 complement(645486..646619) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 646619 4541698 NT01CX_1474 Clostridium novyi NT ATP-dependent RNA helicase YP_877555.1 645486 R 386415 CDS YP_877556.1 118443840 4540855 646758..648188 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase 648188 4540855 NT01CX_1475 Clostridium novyi NT ATP-dependent RNA helicase YP_877556.1 646758 D 386415 CDS YP_877557.1 118444383 4541245 648290..649051 1 NC_008593.1 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 649051 4541245 NT01CX_1476 Clostridium novyi NT IclR family transcriptional regulator YP_877557.1 648290 D 386415 CDS YP_877558.1 118443489 4540200 649230..649883 1 NC_008593.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 649883 4540200 NT01CX_1477 Clostridium novyi NT 2-dehydro-3-deoxyphosphogluconate aldolase YP_877558.1 649230 D 386415 CDS YP_877559.1 118443071 4541792 649895..650917 1 NC_008593.1 identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase 650917 4541792 NT01CX_1478 Clostridium novyi NT 2-dehydro-3-deoxygluconokinase YP_877559.1 649895 D 386415 CDS YP_877560.1 118443227 4539639 651050..651724 1 NC_008593.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 651724 4539639 NT01CX_1479 Clostridium novyi NT GntR family transcriptional regulator YP_877560.1 651050 D 386415 CDS YP_877561.1 118444676 4539675 651984..653702 1 NC_008593.1 identified by match to protein family HMM PF00920; dihydroxyacid dehydratase 653702 4539675 NT01CX_1480 Clostridium novyi NT dihydroxyacid dehydratase YP_877561.1 651984 D 386415 CDS YP_877562.1 118444269 4541647 653831..655201 1 NC_008593.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate permease 655201 4541647 NT01CX_1481 Clostridium novyi NT gluconate permease YP_877562.1 653831 D 386415 CDS YP_877563.1 118443381 4541281 complement(655331..656056) 1 NC_008593.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 656056 nagB 4541281 nagB Clostridium novyi NT glucosamine-6-phosphate deaminase YP_877563.1 655331 R 386415 CDS YP_877564.1 118444453 4540053 656516..656767 1 NC_008593.1 similar to Thermotoga maritima; hypothetical protein 656767 4540053 NT01CX_1483 Clostridium novyi NT hypothetical protein YP_877564.1 656516 D 386415 CDS YP_877565.1 118443605 4539981 656771..657817 1 NC_008593.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 657817 4539981 NT01CX_1484 Clostridium novyi NT biotin synthase YP_877565.1 656771 D 386415 CDS YP_877566.1 118443171 4540313 657819..659195 1 NC_008593.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 659195 thiH 4540313 thiH Clostridium novyi NT thiamine biosynthesis protein ThiH YP_877566.1 657819 D 386415 CDS YP_877567.1 118444546 4540388 659212..660402 1 NC_008593.1 identified by match to protein family HMM TIGR00231; GTP-binding protein 660402 4540388 NT01CX_1486 Clostridium novyi NT GTP-binding protein YP_877567.1 659212 D 386415 CDS YP_877568.1 118442878 4542001 660579..660932 1 NC_008593.1 identified by match to protein family HMM PF02579; hypothetical protein 660932 4542001 NT01CX_1487 Clostridium novyi NT hypothetical protein YP_877568.1 660579 D 386415 CDS YP_877569.1 118443397 4541711 660941..661798 1 NC_008593.1 identified by match to protein family HMM PF00037; ferredoxin 661798 4541711 NT01CX_1488 Clostridium novyi NT ferredoxin YP_877569.1 660941 D 386415 CDS YP_877570.1 118444372 4540459 661786..662643 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656; MinD family protein 662643 4540459 NT01CX_1489 Clostridium novyi NT MinD family protein YP_877570.1 661786 D 386415 CDS YP_877571.1 118442984 4541082 662876..663232 1 NC_008593.1 identified by match to protein family HMM PF02579; hypothetical protein 663232 4541082 NT01CX_1490 Clostridium novyi NT hypothetical protein YP_877571.1 662876 D 386415 CDS YP_877572.1 118443552 4539878 663256..663699 1 NC_008593.1 identified by match to protein family HMM PF02001; HTH DNA-binding protein 663699 4539878 NT01CX_1491 Clostridium novyi NT HTH DNA-binding protein YP_877572.1 663256 D 386415 CDS YP_877573.1 118443613 4539988 complement(663830..664687) 1 NC_008593.1 identified by match to protein family HMM PF01522; chitooligosaccharide deacetylase 664687 4539988 NT01CX_1492 Clostridium novyi NT chitooligosaccharide deacetylase YP_877573.1 663830 R 386415 CDS YP_877574.1 118443549 4539875 complement(664806..666245) 1 NC_008593.1 ISBma2, transposase 666245 4539875 NT01CX_1493 Clostridium novyi NT ISBma2, transposase YP_877574.1 664806 R 386415 CDS YP_877575.1 118443012 4540587 complement(666412..667236) 1 NC_008593.1 identified by match to protein family HMM PF01476; LysM repeat-containing protein 667236 4540587 NT01CX_1494 Clostridium novyi NT LysM repeat-containing protein YP_877575.1 666412 R 386415 CDS YP_877576.1 118444047 4541184 667678..668691 1 NC_008593.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator 668691 4541184 NT01CX_1495 Clostridium novyi NT transcriptional regulator YP_877576.1 667678 D 386415 CDS YP_877577.1 118443334 4539848 668789..669457 1 NC_008593.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 669457 deoC 4539848 deoC Clostridium novyi NT deoxyribose-phosphate aldolase YP_877577.1 668789 D 386415 CDS YP_877578.1 118444187 4541317 669597..670769 1 NC_008593.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 670769 deoB 4541317 deoB Clostridium novyi NT phosphopentomutase YP_877578.1 669597 D 386415 CDS YP_877579.1 118444717 4541516 670859..671677 1 NC_008593.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 671677 4541516 NT01CX_1498 Clostridium novyi NT purine nucleoside phosphorylase YP_877579.1 670859 D 386415 CDS YP_877580.1 118443139 4541750 671741..673066 1 NC_008593.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; pyrimidine-nucleoside phosphorylase 673066 4541750 NT01CX_1499 Clostridium novyi NT pyrimidine-nucleoside phosphorylase YP_877580.1 671741 D 386415 CDS YP_877581.1 118444415 4541216 673239..674453 1 NC_008593.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; nucleoside permease 674453 4541216 NT01CX_1500 Clostridium novyi NT nucleoside permease YP_877581.1 673239 D 386415 CDS YP_877582.1 118444584 4540126 674667..675623 1 NC_008593.1 similar to YceG B. subtilis; hypothetical protein 675623 4540126 NT01CX_1501 Clostridium novyi NT hypothetical protein YP_877582.1 674667 D 386415 CDS YP_877583.1 118443096 4541756 675669..675863 1 NC_008593.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 675863 thiS 4541756 thiS Clostridium novyi NT thiamine biosynthesis protein ThiS YP_877583.1 675669 D 386415 CDS YP_877584.1 118443741 4541369 675866..676504 1 NC_008593.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 676504 thiF 4541369 thiF Clostridium novyi NT thiamine biosynthesis protein ThiF YP_877584.1 675866 D 386415 CDS YP_877585.1 118443880 4540424 676524..677147 1 NC_008593.1 identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 677147 4540424 NT01CX_1504 Clostridium novyi NT thiamine-phosphate pyrophosphorylase YP_877585.1 676524 D 386415 CDS YP_877586.1 118444291 4539712 complement(677310..678062) 1 NC_008593.1 identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 678062 4539712 NT01CX_1505 Clostridium novyi NT xylanase/chitin deacetylase YP_877586.1 677310 R 386415 CDS YP_877587.1 118444287 4539709 complement(678108..679307) 1 NC_008593.1 hypothetical protein 679307 4539709 NT01CX_1506 Clostridium novyi NT hypothetical protein YP_877587.1 678108 R 386415 CDS YP_877588.1 118444704 4540223 679478..680809 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; Na+-driven multidrug efflux pump 680809 4540223 NT01CX_1507 Clostridium novyi NT Na+-driven multidrug efflux pump YP_877588.1 679478 D 386415 CDS YP_877589.1 118444205 4539681 680890..683499 1 NC_008593.1 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; lysyl transferase 683499 4539681 NT01CX_1508 Clostridium novyi NT lysyl transferase YP_877589.1 680890 D 386415 CDS YP_877590.1 118443688 4540228 683598..684866 1 NC_008593.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; integral membrane protein 684866 4540228 NT01CX_1509 Clostridium novyi NT integral membrane protein YP_877590.1 683598 D 386415 CDS YP_877591.1 118443008 4540584 685034..686251 1 NC_008593.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; spore peptidogylcan hydrolase 686251 4540584 NT01CX_1510 Clostridium novyi NT spore peptidogylcan hydrolase YP_877591.1 685034 D 386415 CDS YP_877592.1 118444541 4540385 686421..688391 1 NC_008593.1 hypothetical protein 688391 4540385 NT01CX_1511 Clostridium novyi NT hypothetical protein YP_877592.1 686421 D 386415 CDS YP_877593.1 118443846 4540860 complement(688456..690453) 1 NC_008593.1 identified by match to protein family HMM PF06874; fructose-1,6-bisphosphatase 690453 4540860 NT01CX_1512 Clostridium novyi NT fructose-1,6-bisphosphatase YP_877593.1 688456 R 386415 CDS YP_877594.1 118443383 4541283 690701..691369 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 691369 4541283 NT01CX_1513 Clostridium novyi NT two-component response regulator YP_877594.1 690701 D 386415 CDS YP_877595.1 118443727 4540512 691373..692893 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 692893 4540512 NT01CX_1514 Clostridium novyi NT histidine kinase YP_877595.1 691373 D 386415 CDS YP_877596.1 118443309 4540612 complement(692970..694106) 1 NC_008593.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; HtrA-like serine protease 694106 4540612 NT01CX_1515 Clostridium novyi NT HtrA-like serine protease YP_877596.1 692970 R 386415 CDS YP_877597.1 118444295 4539714 complement(694192..695007) 1 NC_008593.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 695007 4539714 NT01CX_1516 Clostridium novyi NT ribonuclease BN YP_877597.1 694192 R 386415 CDS YP_877598.1 118443891 4540432 695719..696870 1 NC_008593.1 hypothetical protein 696870 4540432 NT01CX_1517 Clostridium novyi NT hypothetical protein YP_877598.1 695719 D 386415 CDS YP_877599.1 118443405 4541716 696939..700226 1 NC_008593.1 hypothetical protein 700226 4541716 NT01CX_1518 Clostridium novyi NT hypothetical protein YP_877599.1 696939 D 386415 CDS YP_877600.1 118442876 4541999 700586..701746 1 NC_008593.1 identified by match to protein family HMM PF02687; lipoprotein releasing system transmembrane protein 701746 4541999 NT01CX_1519 Clostridium novyi NT lipoprotein releasing system transmembrane protein YP_877600.1 700586 D 386415 CDS YP_877601.1 118443425 4541948 701739..702416 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 702416 4541948 NT01CX_1520 Clostridium novyi NT ABC transporter ATP-binding protein YP_877601.1 701739 D 386415 CDS YP_877602.1 118442900 4541982 702453..703181 1 NC_008593.1 cell wall hydrolase 703181 4541982 NT01CX_1521 Clostridium novyi NT cell wall hydrolase YP_877602.1 702453 D 386415 CDS YP_877603.1 118444684 4540207 703467..704156 1 NC_008593.1 identified by match to protein family HMM PF02706; Cps19aC 704156 4540207 NT01CX_1522 Clostridium novyi NT Cps19aC YP_877603.1 703467 D 386415 CDS YP_877604.1 118444157 4541239 704173..704877 1 NC_008593.1 identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap1B 704877 4541239 NT01CX_1523 Clostridium novyi NT capsular polysaccharide biosynthesis protein Cap1B YP_877604.1 704173 D 386415 CDS YP_877605.1 118443665 4540995 704874..705644 1 NC_008593.1 CpsB protein 705644 4540995 NT01CX_1524 Clostridium novyi NT CpsB protein YP_877605.1 704874 D 386415 CDS YP_877606.1 118443095 4541755 705738..706397 1 NC_008593.1 identified by match to protein family HMM PF02397; capsular polysaccharide biosynthsis protein 706397 4541755 NT01CX_1525 Clostridium novyi NT capsular polysaccharide biosynthsis protein YP_877606.1 705738 D 386415 CDS YP_877607.1 118443114 4541768 706410..707567 1 NC_008593.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 707567 4541768 NT01CX_1526 Clostridium novyi NT UDP-N-acetylglucosamine 2-epimerase YP_877607.1 706410 D 386415 CDS YP_877608.1 118443574 4541872 707594..708970 1 NC_008593.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; capsular polysaccharide biosynthesis protein Cap5O 708970 4541872 NT01CX_1527 Clostridium novyi NT capsular polysaccharide biosynthesis protein Cap5O YP_877608.1 707594 D 386415 CDS YP_877609.1 118443194 4541482 708983..710080 1 NC_008593.1 identified by match to protein family HMM PF00534; glycoside hydrolase 710080 4541482 NT01CX_1528 Clostridium novyi NT glycoside hydrolase YP_877609.1 708983 D 386415 CDS YP_877610.1 118443615 4539990 710157..711281 1 NC_008593.1 hypothetical protein 711281 4539990 NT01CX_1529 Clostridium novyi NT hypothetical protein YP_877610.1 710157 D 386415 CDS YP_877611.1 118444259 4541638 711298..712428 1 NC_008593.1 glycosyltransferase 712428 4541638 NT01CX_1530 Clostridium novyi NT glycosyltransferase YP_877611.1 711298 D 386415 CDS YP_877612.1 118444668 4539667 712443..713795 1 NC_008593.1 hypothetical protein 713795 4539667 NT01CX_1531 Clostridium novyi NT hypothetical protein YP_877612.1 712443 D 386415 CDS YP_877613.1 118442954 4539722 713792..715165 1 NC_008593.1 capsular polysaccharide biosynthesis protein 715165 4539722 NT01CX_1532 Clostridium novyi NT capsular polysaccharide biosynthesis protein YP_877613.1 713792 D 386415 CDS YP_877614.1 118443361 4541836 715224..716297 1 NC_008593.1 capsule biosynthesis protein capA 716297 4541836 NT01CX_1533 Clostridium novyi NT capsule biosynthesis protein capA YP_877614.1 715224 D 386415 CDS YP_877615.1 118444010 4540643 716281..717510 1 NC_008593.1 identified by match to protein family HMM PF01943; RfbX family O-antigen/teichoic acid exporter membrane protein 717510 4540643 NT01CX_1534 Clostridium novyi NT RfbX family O-antigen/teichoic acid exporter membrane protein YP_877615.1 716281 D 386415 CDS YP_877616.1 118443182 4540323 717520..719694 1 NC_008593.1 hypothetical protein 719694 4540323 NT01CX_1535 Clostridium novyi NT hypothetical protein YP_877616.1 717520 D 386415 CDS YP_877617.1 118444364 4540451 719740..720711 1 NC_008593.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 720711 galE 4540451 galE Clostridium novyi NT UDP-glucose 4-epimerase YP_877617.1 719740 D 386415 CDS YP_877618.1 118443851 4540865 720726..721172 1 NC_008593.1 identified by match to protein family HMM PF04892; phosphotransbutyrylase 721172 4540865 NT01CX_1537 Clostridium novyi NT phosphotransbutyrylase YP_877618.1 720726 D 386415 CDS YP_877619.1 118443451 4541891 721379..722302 1 NC_008593.1 hypothetical protein 722302 4541891 NT01CX_1538 Clostridium novyi NT hypothetical protein YP_877619.1 721379 D 386415 CDS YP_877620.1 118443157 4541708 722464..723903 1 NC_008593.1 ISBma2, transposase 723903 4541708 NT01CX_1539 Clostridium novyi NT ISBma2, transposase YP_877620.1 722464 D 386415 CDS YP_877621.1 118444195 4541324 complement(723973..724854) 1 NC_008593.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 724854 galU 4541324 galU Clostridium novyi NT UTP-glucose-1-phosphate uridylyltransferase YP_877621.1 723973 R 386415 CDS YP_877622.1 118443779 4541049 725128..727734 1 NC_008593.1 identified by match to protein family HMM PF01841; transglutaminase 727734 4541049 NT01CX_1541 Clostridium novyi NT transglutaminase YP_877622.1 725128 D 386415 CDS YP_877623.1 118444285 4539707 complement(727868..729040) 1 NC_008593.1 identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 729040 4539707 NT01CX_1542 Clostridium novyi NT iron-containing alcohol dehydrogenase YP_877623.1 727868 R 386415 CDS YP_877624.1 118443861 4541677 729320..731599 1 NC_008593.1 hypothetical protein 731599 4541677 NT01CX_1543 Clostridium novyi NT hypothetical protein YP_877624.1 729320 D 386415 CDS YP_877625.1 118443904 4541492 731805..732992 1 NC_008593.1 identified by match to protein family HMM PF01841; transglutaminase 732992 4541492 NT01CX_1544 Clostridium novyi NT transglutaminase YP_877625.1 731805 D 386415 CDS YP_877626.1 118443493 4540204 733157..733705 1 NC_008593.1 identified by match to protein family HMM PF04542; sigma-70 region 2 domain-containing protein 733705 4540204 NT01CX_1545 Clostridium novyi NT sigma-70 region 2 domain-containing protein YP_877626.1 733157 D 386415 CDS YP_877627.1 118443076 4541797 733784..734182 1 NC_008593.1 lipoprotein 734182 4541797 NT01CX_1546 Clostridium novyi NT lipoprotein YP_877627.1 733784 D 386415 CDS YP_877628.1 118444554 4540393 complement(734218..734877) 1 NC_008593.1 identified by match to protein family HMM PF00440; AcrR family transcriptional regulator 734877 4540393 NT01CX_1547 Clostridium novyi NT AcrR family transcriptional regulator YP_877628.1 734218 R 386415 CDS YP_877629.1 118443568 4539892 735074..736537 1 NC_008593.1 identified by match to protein family HMM TIGR01730; HlyD family secretion protein 736537 4539892 NT01CX_1548 Clostridium novyi NT HlyD family secretion protein YP_877629.1 735074 D 386415 CDS YP_877630.1 118443153 4541704 736551..737126 1 NC_008593.1 AcrB/AcrD/AcrF family protein 737126 4541704 NT01CX_1549 Clostridium novyi NT AcrB/AcrD/AcrF family protein YP_877630.1 736551 D 386415 CDS YP_877631.1 118444632 4539597 737114..739669 1 NC_008593.1 RND efflux transporter 739669 4539597 NT01CX_1550 Clostridium novyi NT RND efflux transporter YP_877631.1 737114 D 386415 CDS YP_877632.1 118444324 4540808 739675..741321 1 NC_008593.1 hypothetical protein 741321 4540808 NT01CX_1551 Clostridium novyi NT hypothetical protein YP_877632.1 739675 D 386415 CDS YP_877633.1 118443360 4541835 741321..742448 1 NC_008593.1 hypothetical protein 742448 4541835 NT01CX_1552 Clostridium novyi NT hypothetical protein YP_877633.1 741321 D 386415 CDS YP_877634.1 118443005 4540582 742610..743557 1 NC_008593.1 AcrA/AcrE family protein 743557 4540582 NT01CX_1553 Clostridium novyi NT AcrA/AcrE family protein YP_877634.1 742610 D 386415 CDS YP_877635.1 118444511 4539927 743623..745080 1 NC_008593.1 identified by match to protein family HMM PF03062; alginate O-acetylation protein 745080 algI 4539927 algI Clostridium novyi NT alginate O-acetylation protein YP_877635.1 743623 D 386415 CDS YP_877636.1 118444082 4539941 745096..746148 1 NC_008593.1 hypothetical protein 746148 4539941 NT01CX_1555 Clostridium novyi NT hypothetical protein YP_877636.1 745096 D 386415 CDS YP_877637.1 118442951 4539621 746258..750718 1 NC_008593.1 hypothetical protein 750718 4539621 NT01CX_1556 Clostridium novyi NT hypothetical protein YP_877637.1 746258 D 386415 CDS YP_877638.1 118443335 4539849 750902..751732 1 NC_008593.1 hypothetical protein 751732 4539849 NT01CX_1557 Clostridium novyi NT hypothetical protein YP_877638.1 750902 D 386415 CDS YP_877639.1 118444254 4541544 751747..752388 1 NC_008593.1 hypothetical protein 752388 4541544 NT01CX_1558 Clostridium novyi NT hypothetical protein YP_877639.1 751747 D 386415 CDS YP_877640.1 118444642 4539778 752415..752897 1 NC_008593.1 hypothetical protein 752897 4539778 NT01CX_1559 Clostridium novyi NT hypothetical protein YP_877640.1 752415 D 386415 CDS YP_877641.1 118443950 4540744 753030..753587 1 NC_008593.1 identified by match to protein family HMM PF02659; integral membrane protein 753587 4540744 NT01CX_1560 Clostridium novyi NT integral membrane protein YP_877641.1 753030 D 386415 CDS YP_877642.1 118443154 4541705 753656..753997 1 NC_008593.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family 753997 4541705 NT01CX_1561 Clostridium novyi NT single-strand binding protein family YP_877642.1 753656 D 386415 CDS YP_877643.1 118442944 4539614 754148..754570 1 NC_008593.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 754570 4539614 NT01CX_1562 Clostridium novyi NT ferric uptake regulation protein YP_877643.1 754148 D 386415 CDS YP_877644.1 118444691 4540212 754633..755010 1 NC_008593.1 hypothetical protein 755010 4540212 NT01CX_1563 Clostridium novyi NT hypothetical protein YP_877644.1 754633 D 386415 CDS YP_877645.1 118443219 4539636 755036..756823 1 NC_008593.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 756823 pepF 4539636 pepF Clostridium novyi NT oligoendopeptidase F YP_877645.1 755036 D 386415 CDS YP_877646.1 118443347 4539860 756960..758018 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; hypothetical protein 758018 4539860 NT01CX_1565 Clostridium novyi NT hypothetical protein YP_877646.1 756960 D 386415 CDS YP_877647.1 118442959 4539727 758104..758712 1 NC_008593.1 identified by match to protein family HMM PF01694; rhomboid family membrane protein 758712 4539727 NT01CX_1566 Clostridium novyi NT rhomboid family membrane protein YP_877647.1 758104 D 386415 CDS YP_877648.1 118443726 4540511 758722..759420 1 NC_008593.1 hypothetical protein 759420 4540511 NT01CX_1567 Clostridium novyi NT hypothetical protein YP_877648.1 758722 D 386415 CDS YP_877649.1 118442871 4541994 complement(759555..761270) 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent zinc metallopeptidase 761270 4541994 NT01CX_1568 Clostridium novyi NT ATP-dependent zinc metallopeptidase YP_877649.1 759555 R 386415 CDS YP_877650.1 118444567 4540112 761539..762519 1 NC_008593.1 hypothetical protein 762519 4540112 NT01CX_1569 Clostridium novyi NT hypothetical protein YP_877650.1 761539 D 386415 CDS YP_877651.1 118444199 4541328 762646..763350 1 NC_008593.1 ribonuclease HI 763350 4541328 NT01CX_1570 Clostridium novyi NT ribonuclease HI YP_877651.1 762646 D 386415 CDS YP_877652.1 118443637 4541865 763405..763578 1 NC_008593.1 hypothetical protein 763578 4541865 NT01CX_1571 Clostridium novyi NT hypothetical protein YP_877652.1 763405 D 386415 CDS YP_877653.1 118443100 4541759 763817..765061 1 NC_008593.1 identified by match to protein family HMM PF00515; XRE family transcriptional regulator 765061 4541759 NT01CX_1572 Clostridium novyi NT XRE family transcriptional regulator YP_877653.1 763817 D 386415 CDS YP_877654.1 118443036 4539654 765085..766338 1 NC_008593.1 ferrous iron transport protein B-like protein 766338 4539654 NT01CX_1573 Clostridium novyi NT ferrous iron transport protein B-like protein YP_877654.1 765085 D 386415 CDS YP_877655.1 118444504 4539921 complement(766467..767189) 1 NC_008593.1 identified by match to protein family HMM PF07685; cobyric acid synthase 767189 4539921 NT01CX_1574 Clostridium novyi NT cobyric acid synthase YP_877655.1 766467 R 386415 CDS YP_877656.1 118444689 4540210 complement(767199..768605) 1 NC_008593.1 identified by match to protein family HMM PF01225; Mur ligase family protein 768605 4540210 NT01CX_1575 Clostridium novyi NT Mur ligase family protein YP_877656.1 767199 R 386415 CDS YP_877657.1 118443232 4540326 768967..769728 1 NC_008593.1 COG1434 family; identified by match to protein family HMM PF02698; hypothetical protein 769728 4540326 NT01CX_1576 Clostridium novyi NT hypothetical protein YP_877657.1 768967 D 386415 CDS YP_877658.1 118442962 4539730 complement(769802..771241) 1 NC_008593.1 ISBma2, transposase 771241 4539730 NT01CX_1577 Clostridium novyi NT ISBma2, transposase YP_877658.1 769802 R 386415 CDS YP_877659.1 118443349 4539861 complement(771458..772306) 1 NC_008593.1 YitT family COG1284 subfamily; identified by match to protein family HMM PF02588; hypothetical protein 772306 4539861 NT01CX_1578 Clostridium novyi NT hypothetical protein YP_877659.1 771458 R 386415 CDS YP_877660.1 118442918 4540921 773073..774392 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; rnfC/nqrF 774392 4540921 NT01CX_1579 Clostridium novyi NT rnfC/nqrF YP_877660.1 773073 D 386415 CDS YP_877661.1 118443409 4541720 774409..775362 1 NC_008593.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; NADH:ubiquinone oxidoreductase, Na translocating, B subunit 775362 4541720 NT01CX_1580 Clostridium novyi NT NADH:ubiquinone oxidoreductase, Na translocating, B subunit YP_877661.1 774409 D 386415 CDS YP_877662.1 118443957 4540750 775363..775986 1 NC_008593.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947; rnfG/nqrC 775986 4540750 NT01CX_1581 Clostridium novyi NT rnfG/nqrC YP_877662.1 775363 D 386415 CDS YP_877663.1 118444484 4539963 775986..776585 1 NC_008593.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 776585 4539963 NT01CX_1582 Clostridium novyi NT electron transport complex protein RsxE YP_877663.1 775986 D 386415 CDS YP_877664.1 118443088 4541806 776615..777190 1 NC_008593.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; rnfA/nqrE 777190 4541806 NT01CX_1583 Clostridium novyi NT rnfA/nqrE YP_877664.1 776615 D 386415 CDS YP_877665.1 118443739 4541367 777204..778088 1 NC_008593.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 778088 4541367 NT01CX_1584 Clostridium novyi NT ferredoxin YP_877665.1 777204 D 386415 CDS YP_877666.1 118444079 4539938 complement(778209..778973) 1 NC_008593.1 hypothetical protein 778973 4539938 NT01CX_1585 Clostridium novyi NT hypothetical protein YP_877666.1 778209 R 386415 CDS YP_877667.1 118444519 4540152 779458..780792 1 NC_008593.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 780792 mgtE 4540152 mgtE Clostridium novyi NT magnesium transporter YP_877667.1 779458 D 386415 CDS YP_877668.1 118444117 4540968 781172..782863 1 NC_008593.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 782863 argS 4540968 argS Clostridium novyi NT arginyl-tRNA synthetase YP_877668.1 781172 D 386415 CDS YP_877669.1 118444692 4540213 783152..784132 1 NC_008593.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 784132 manA 4540213 manA Clostridium novyi NT mannose-6-phosphate isomerase YP_877669.1 783152 D 386415 CDS YP_877670.1 118443205 4539624 784292..785089 1 NC_008593.1 hypothetical protein 785089 4539624 NT01CX_1589 Clostridium novyi NT hypothetical protein YP_877670.1 784292 D 386415 CDS YP_877671.1 118443379 4541279 complement(785182..785343) 1 NC_008593.1 hypothetical protein 785343 4541279 NT01CX_1590 Clostridium novyi NT hypothetical protein YP_877671.1 785182 R 386415 CDS YP_877672.1 118443807 4541146 complement(785379..787154) 1 NC_008593.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B 787154 feoB 4541146 feoB Clostridium novyi NT ferrous iron transport protein B YP_877672.1 785379 R 386415 CDS YP_877673.1 118444464 4540063 complement(787156..787425) 1 NC_008593.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 787425 feoA 4540063 feoA Clostridium novyi NT ferrous iron transport protein A YP_877673.1 787156 R 386415 CDS YP_877674.1 118443015 4540589 787594..788256 1 NC_008593.1 hypothetical protein 788256 4540589 NT01CX_1593 Clostridium novyi NT hypothetical protein YP_877674.1 787594 D 386415 CDS YP_877675.1 118444138 4541222 788538..790226 1 NC_008593.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV fimbrial assembly protein PilB 790226 4541222 NT01CX_1594 Clostridium novyi NT type IV fimbrial assembly protein PilB YP_877675.1 788538 D 386415 CDS YP_877676.1 118443786 4541129 790255..791463 1 NC_008593.1 identified by match to protein family HMM PF00482; pilin biogenesis protein 791463 4541129 NT01CX_1595 Clostridium novyi NT pilin biogenesis protein YP_877676.1 790255 D 386415 CDS YP_877677.1 118444105 4540040 791674..792150 1 NC_008593.1 identified by match to protein family HMM PF00114; pilin family protein 792150 4540040 NT01CX_1596 Clostridium novyi NT pilin family protein YP_877677.1 791674 D 386415 CDS YP_877678.1 118444525 4540156 792218..792793 1 NC_008593.1 identified by match to protein family HMM PF05137; fimbrial assembly protein (PilN) family protein 792793 4540156 NT01CX_1597 Clostridium novyi NT fimbrial assembly protein (PilN) family protein YP_877678.1 792218 D 386415 CDS YP_877679.1 118444100 4540035 792783..794078 1 NC_008593.1 hypothetical protein 794078 4540035 NT01CX_1598 Clostridium novyi NT hypothetical protein YP_877679.1 792783 D 386415 CDS YP_877680.1 118444573 4540117 794091..794786 1 NC_008593.1 hypothetical protein 794786 4540117 NT01CX_1599 Clostridium novyi NT hypothetical protein YP_877680.1 794091 D 386415 CDS YP_877681.1 118443529 4541929 794799..797039 1 NC_008593.1 hypothetical protein 797039 4541929 NT01CX_1600 Clostridium novyi NT hypothetical protein YP_877681.1 794799 D 386415 CDS YP_877682.1 118443897 4540438 797059..797535 1 NC_008593.1 hypothetical protein 797535 4540438 NT01CX_1601 Clostridium novyi NT hypothetical protein YP_877682.1 797059 D 386415 CDS YP_877683.1 118444319 4540803 797532..798272 1 NC_008593.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; prepilin peptidase, type IV 798272 4540803 NT01CX_1602 Clostridium novyi NT prepilin peptidase, type IV YP_877683.1 797532 D 386415 CDS YP_877684.1 118443319 4540622 798315..799373 1 NC_008593.1 identified by match to protein family HMM TIGR01175; fimbrial assembly protein 799373 4540622 NT01CX_1603 Clostridium novyi NT fimbrial assembly protein YP_877684.1 798315 D 386415 CDS YP_877685.1 118443684 4541011 799394..803152 1 NC_008593.1 hypothetical protein 803152 4541011 NT01CX_1604 Clostridium novyi NT hypothetical protein YP_877685.1 799394 D 386415 CDS YP_877686.1 118443040 4539658 803298..805424 1 NC_008593.1 identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 805424 4539658 NT01CX_1605 Clostridium novyi NT von Willebrand factor type A domain-containing protein YP_877686.1 803298 D 386415 CDS YP_877687.1 118443456 4541895 complement(805495..807153) 1 NC_008593.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease 807153 4541895 NT01CX_1606 Clostridium novyi NT permease YP_877687.1 805495 R 386415 CDS YP_877688.1 118443070 4541791 complement(807295..807825) 1 NC_008593.1 identified by match to protein family HMM PF00440; transcriptional regulator 807825 4541791 NT01CX_1607 Clostridium novyi NT transcriptional regulator YP_877688.1 807295 R 386415 CDS YP_877689.1 118444549 4540390 808007..808693 1 NC_008593.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 808693 4540390 NT01CX_1608 Clostridium novyi NT GntR family transcriptional regulator YP_877689.1 808007 D 386415 CDS YP_877690.1 118444140 4541224 808982..810505 1 NC_008593.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 810505 4541224 NT01CX_1609 Clostridium novyi NT L-lactate permease YP_877690.1 808982 D 386415 CDS YP_877691.1 118443761 4541036 810589..811377 1 NC_008593.1 identified by match to protein family HMM PF01012; electron-transferring flavoprotein small chain 811377 4541036 NT01CX_1610 Clostridium novyi NT electron-transferring flavoprotein small chain YP_877691.1 810589 D 386415 CDS YP_877692.1 118443296 4541916 811452..812672 1 NC_008593.1 identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha 812672 4541916 NT01CX_1611 Clostridium novyi NT electron transfer flavoprotein subunit alpha YP_877692.1 811452 D 386415 CDS YP_877693.1 118442943 4539613 812718..814118 1 NC_008593.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 814118 4539613 NT01CX_1612 Clostridium novyi NT glycolate oxidase subunit GlcD YP_877693.1 812718 D 386415 CDS YP_877694.1 118444407 4541209 814273..816738 1 NC_008593.1 hypothetical protein 816738 4541209 NT01CX_1613 Clostridium novyi NT hypothetical protein YP_877694.1 814273 D 386415 CDS YP_877695.1 118442859 4541986 complement(816806..818269) 1 NC_008593.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 818269 gltX 4541986 gltX Clostridium novyi NT glutamyl-tRNA synthetase YP_877695.1 816806 R 386415 CDS YP_877696.1 118444124 4540975 818511..819191 1 NC_008593.1 identified by match to protein family HMM PF01569; PAP2 family protein 819191 4540975 NT01CX_1615 Clostridium novyi NT PAP2 family protein YP_877696.1 818511 D 386415 CDS YP_877697.1 118443204 4539623 819330..820022 1 NC_008593.1 hypothetical protein 820022 4539623 NT01CX_1616 Clostridium novyi NT hypothetical protein YP_877697.1 819330 D 386415 CDS YP_877698.1 118442933 4539607 complement(819994..820911) 1 NC_008593.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 820911 4539607 NT01CX_1617 Clostridium novyi NT ErfK/YbiS/YcfS/YnhG family protein YP_877698.1 819994 R 386415 CDS YP_877699.1 118443555 4539880 821034..822227 1 NC_008593.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 822227 4539880 NT01CX_1618 Clostridium novyi NT peptidase YP_877699.1 821034 D 386415 CDS YP_877700.1 118442909 4540914 complement(822228..822860) 1 NC_008593.1 hypothetical protein 822860 4540914 NT01CX_1619 Clostridium novyi NT hypothetical protein YP_877700.1 822228 R 386415 CDS YP_877701.1 118444073 4539933 823010..824122 1 NC_008593.1 identified by match to protein family HMM PF02073; aminopeptidase 824122 4539933 NT01CX_1620 Clostridium novyi NT aminopeptidase YP_877701.1 823010 D 386415 CDS YP_877702.1 118444189 4541319 complement(824156..825487) 1 NC_008593.1 identified by match to protein family HMM PF00768; match to protein family HMM PF00905; D-alanyl-D-alanine carboxypeptidase 825487 4541319 NT01CX_1621 Clostridium novyi NT D-alanyl-D-alanine carboxypeptidase YP_877702.1 824156 R 386415 CDS YP_877703.1 118443680 4541008 825625..826227 1 NC_008593.1 identified by match to protein family HMM PF00293; phosphohydrolase (mutT family protein) 826227 4541008 NT01CX_1622 Clostridium novyi NT phosphohydrolase (mutT family protein) YP_877703.1 825625 D 386415 CDS YP_877704.1 118444298 4539716 826350..826991 1 NC_008593.1 similar to Thermotoga; hypothetical protein 826991 4539716 NT01CX_1623 Clostridium novyi NT hypothetical protein YP_877704.1 826350 D 386415 CDS YP_877705.1 118443972 4540364 827012..827311 1 NC_008593.1 hypothetical protein 827311 4540364 NT01CX_1624 Clostridium novyi NT hypothetical protein YP_877705.1 827012 D 386415 CDS YP_877706.1 118444414 4541215 827382..827615 1 NC_008593.1 hypothetical protein 827615 4541215 NT01CX_1625 Clostridium novyi NT hypothetical protein YP_877706.1 827382 D 386415 CDS YP_877707.1 118443937 4540274 complement(827683..829158) 1 NC_008593.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 829158 4540274 NT01CX_1626 Clostridium novyi NT nicotinate phosphoribosyltransferase YP_877707.1 827683 R 386415 CDS YP_877708.1 118443754 4541379 829402..831585 1 NC_008593.1 identified by match to protein family HMM PF00580; superfamily I DNA helicase 831585 4541379 NT01CX_1627 Clostridium novyi NT superfamily I DNA helicase YP_877708.1 829402 D 386415 CDS YP_877709.1 118442970 4539737 831754..832047 1 NC_008593.1 hypothetical protein 832047 4539737 NT01CX_1628 Clostridium novyi NT hypothetical protein YP_877709.1 831754 D 386415 CDS YP_877710.1 118444596 4540096 832166..834283 1 NC_008593.1 cell division protein ftsA 834283 4540096 NT01CX_1629 Clostridium novyi NT cell division protein ftsA YP_877710.1 832166 D 386415 CDS YP_877711.1 118444182 4540847 834302..835474 1 NC_008593.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; IAA-like amino acid hydrolase 835474 4540847 NT01CX_1630 Clostridium novyi NT IAA-like amino acid hydrolase YP_877711.1 834302 D 386415 CDS YP_877712.1 118444019 4540652 835638..836609 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C 836609 4540652 NT01CX_1631 Clostridium novyi NT ribosomal large subunit pseudouridine synthase C YP_877712.1 835638 D 386415 CDS YP_877713.1 118443123 4541737 836622..838235 1 NC_008593.1 identified by match to protein family HMM PF01943; stage V sporulation protein B 838235 4541737 NT01CX_1632 Clostridium novyi NT stage V sporulation protein B YP_877713.1 836622 D 386415 CDS YP_877714.1 118444226 4539697 complement(838312..839826) 1 NC_008593.1 identified by match to protein family HMM PF01943; stage V sporulation protein B 839826 4539697 NT01CX_1633 Clostridium novyi NT stage V sporulation protein B YP_877714.1 838312 R 386415 CDS YP_877715.1 118444700 4540219 840000..840464 1 NC_008593.1 hypothetical protein 840464 4540219 NT01CX_1634 Clostridium novyi NT hypothetical protein YP_877715.1 840000 D 386415 CDS YP_877716.1 118443847 4540861 840486..841214 1 NC_008593.1 hypothetical protein 841214 4540861 NT01CX_1635 Clostridium novyi NT hypothetical protein YP_877716.1 840486 D 386415 CDS YP_877717.1 118443434 4541955 complement(841291..842523) 1 NC_008593.1 identified by match to protein family HMM PF00375; proton/glutamate symporter 842523 4541955 NT01CX_1636 Clostridium novyi NT proton/glutamate symporter YP_877717.1 841291 R 386415 CDS YP_877718.1 118443032 4539650 842740..844071 1 NC_008593.1 hypothetical protein 844071 4539650 NT01CX_1637 Clostridium novyi NT hypothetical protein YP_877718.1 842740 D 386415 CDS YP_877719.1 118444437 4540144 844089..844808 1 NC_008593.1 phospholipase C related protein 844808 4540144 NT01CX_1638 Clostridium novyi NT phospholipase C related protein YP_877719.1 844089 D 386415 CDS YP_877720.1 118443667 4540997 844964..845491 1 NC_008593.1 hypothetical protein 845491 4540997 NT01CX_1639 Clostridium novyi NT hypothetical protein YP_877720.1 844964 D 386415 CDS YP_877721.1 118443668 4540998 845451..847223 1 NC_008593.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055; magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 847223 4540998 NT01CX_1640 Clostridium novyi NT magnesium-protoporphyrin IX monomethyl ester oxidative cyclase YP_877721.1 845451 D 386415 CDS YP_877722.1 118443125 4541738 847460..847795 1 NC_008593.1 V-type sodium ATP synthase subunit G 847795 4541738 NT01CX_1641 Clostridium novyi NT V-type sodium ATP synthase subunit G YP_877722.1 847460 D 386415 CDS YP_877723.1 118444658 4539791 847782..849737 1 NC_008593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 849737 atpI 4539791 atpI Clostridium novyi NT V-type ATP synthase subunit I YP_877723.1 847782 D 386415 CDS YP_877724.1 118443282 4541071 849827..850327 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 850327 atpK 4541071 atpK Clostridium novyi NT V-type ATP synthase subunit K YP_877724.1 849827 D 386415 CDS YP_877725.1 118443870 4541684 850364..850960 1 NC_008593.1 identified by match to protein family HMM PF01991; ATP synthase (E/31 kDa) subunit 850960 4541684 NT01CX_1644 Clostridium novyi NT ATP synthase (E/31 kDa) subunit YP_877725.1 850364 D 386415 CDS YP_877726.1 118443547 4539873 850974..851975 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C 851975 4539873 NT01CX_1645 Clostridium novyi NT V-type ATP synthase subunit C YP_877726.1 850974 D 386415 CDS YP_877727.1 118444530 4540160 851968..852276 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 852276 4540160 NT01CX_1646 Clostridium novyi NT V-type ATP synthase subunit F YP_877727.1 851968 D 386415 CDS YP_877728.1 118444118 4540969 852295..854070 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 854070 4540969 NT01CX_1647 Clostridium novyi NT V-type ATP synthase subunit A YP_877728.1 852295 D 386415 CDS YP_877729.1 118444114 4540966 854063..855445 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 855445 atpB 4540966 atpB Clostridium novyi NT V-type ATP synthase subunit B YP_877729.1 854063 D 386415 CDS YP_877730.1 118443685 4541012 855448..856098 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 856098 4541012 NT01CX_1649 Clostridium novyi NT V-type ATP synthase subunit D YP_877730.1 855448 D 386415 CDS YP_877731.1 118443269 4541061 856270..856746 1 NC_008593.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 856746 4541061 NT01CX_1650 Clostridium novyi NT peptide deformylase YP_877731.1 856270 D 386415 CDS YP_877732.1 118444401 4541203 856893..857402 1 NC_008593.1 hypothetical protein 857402 4541203 NT01CX_1651 Clostridium novyi NT hypothetical protein YP_877732.1 856893 D 386415 CDS YP_877733.1 118443128 4541741 857553..857891 1 NC_008593.1 hypothetical protein 857891 4541741 NT01CX_1652 Clostridium novyi NT hypothetical protein YP_877733.1 857553 D 386415 CDS YP_877734.1 118444500 4539918 857914..860199 1 NC_008593.1 superfamily I DNA helicase 860199 4539918 NT01CX_1653 Clostridium novyi NT superfamily I DNA helicase YP_877734.1 857914 D 386415 CDS YP_877735.1 118444680 4539678 860240..861427 1 NC_008593.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; flavodoxin 861427 4539678 NT01CX_1654 Clostridium novyi NT flavodoxin YP_877735.1 860240 D 386415 CDS YP_877736.1 118443085 4541804 862020..862988 1 NC_008593.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 862988 glpX 4541804 glpX Clostridium novyi NT fructose 1,6-bisphosphatase II YP_877736.1 862020 D 386415 CDS YP_877737.1 118443377 4541277 863163..864086 1 NC_008593.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 864086 4541277 NT01CX_1656 Clostridium novyi NT HPr kinase/phosphorylase YP_877737.1 863163 D 386415 CDS YP_877738.1 118444169 4540835 864070..864621 1 NC_008593.1 identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 864621 4540835 NT01CX_1657 Clostridium novyi NT 5-formyltetrahydrofolate cyclo-ligase YP_877738.1 864070 D 386415 CDS YP_877739.1 118444490 4539968 864667..865608 1 NC_008593.1 identified by match to protein family HMM PF01544; divalent cation transporter 865608 4539968 NT01CX_1658 Clostridium novyi NT divalent cation transporter YP_877739.1 864667 D 386415 CDS YP_877740.1 118442895 4541977 865699..867108 1 NC_008593.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 867108 4541977 NT01CX_1659 Clostridium novyi NT aminopeptidase 1 YP_877740.1 865699 D 386415 CDS YP_877741.1 118443117 4541732 complement(867160..867357) 1 NC_008593.1 hypothetical protein 867357 4541732 NT01CX_1660 Clostridium novyi NT hypothetical protein YP_877741.1 867160 R 386415 CDS YP_877742.1 118443644 4539760 complement(867411..868244) 1 NC_008593.1 similar to YciV; identified by match to protein family HMM PF02231; metal-dependent phosphoesterase 868244 4539760 NT01CX_1661 Clostridium novyi NT metal-dependent phosphoesterase YP_877742.1 867411 R 386415 CDS YP_877743.1 118444255 4541634 868407..871328 1 NC_008593.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; zinc-dependent peptidase 871328 4541634 NT01CX_1662 Clostridium novyi NT zinc-dependent peptidase YP_877743.1 868407 D 386415 CDS YP_877744.1 118443445 4541963 complement(871381..871869) 1 NC_008593.1 hypothetical protein 871869 4541963 NT01CX_1663 Clostridium novyi NT hypothetical protein YP_877744.1 871381 R 386415 CDS YP_877745.1 118443305 4541924 complement(871952..873280) 1 NC_008593.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 873280 brnQ 4541924 brnQ Clostridium novyi NT branched-chain amino acid transport system II carrier protein YP_877745.1 871952 R 386415 CDS YP_877746.1 118444710 4541511 873608..873763 1 NC_008593.1 hypothetical protein 873763 4541511 NT01CX_1665 Clostridium novyi NT hypothetical protein YP_877746.1 873608 D 386415 CDS YP_877747.1 118444099 4540034 complement(873848..875017) 1 NC_008593.1 ISBma2, transposase 875017 4540034 NT01CX_1666 Clostridium novyi NT ISBma2, transposase YP_877747.1 873848 R 386415 CDS YP_877748.1 118443704 4540241 complement(875002..875286) 1 NC_008593.1 ISBma2, transposase 875286 4540241 NT01CX_1667 Clostridium novyi NT ISBma2, transposase YP_877748.1 875002 R 386415 CDS YP_877749.1 118444021 4540654 875582..876340 1 NC_008593.1 hypothetical protein 876340 4540654 NT01CX_1668 Clostridium novyi NT hypothetical protein YP_877749.1 875582 D 386415 CDS YP_877750.1 118444606 4540104 876482..877561 1 NC_008593.1 identified by match to protein family HMM PF00557; proline dipeptidase 877561 4540104 NT01CX_1669 Clostridium novyi NT proline dipeptidase YP_877750.1 876482 D 386415 CDS YP_877751.1 118442985 4541083 877657..877986 1 NC_008593.1 hypothetical protein 877986 4541083 NT01CX_1670 Clostridium novyi NT hypothetical protein YP_877751.1 877657 D 386415 CDS YP_877752.1 118443511 4541820 878102..878257 1 NC_008593.1 hypothetical protein 878257 4541820 NT01CX_1671 Clostridium novyi NT hypothetical protein YP_877752.1 878102 D 386415 CDS YP_877753.1 118443610 4539986 complement(878331..878483) 1 NC_008593.1 hypothetical protein 878483 4539986 NT01CX_1672 Clostridium novyi NT hypothetical protein YP_877753.1 878331 R 386415 CDS YP_877754.1 118443106 4541763 878701..880473 1 NC_008593.1 hypothetical protein 880473 4541763 NT01CX_1673 Clostridium novyi NT hypothetical protein YP_877754.1 878701 D 386415 CDS YP_877755.1 118443655 4539769 880601..880966 1 NC_008593.1 identified by match to protein family HMM TIGR01909; C GCAxxG C C family protein subfamily 880966 4539769 NT01CX_1674 Clostridium novyi NT C GCAxxG C C family protein subfamily YP_877755.1 880601 D 386415 CDS YP_877756.1 118444183 4540848 881270..881566 1 NC_008593.1 hypothetical protein 881566 4540848 NT01CX_1675 Clostridium novyi NT hypothetical protein YP_877756.1 881270 D 386415 CDS YP_877757.1 118444648 4539782 882127..884763 1 NC_008593.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 884763 4539782 NT01CX_1677 Clostridium novyi NT DNA polymerase I YP_877757.1 882127 D 386415 CDS YP_877758.1 118442980 4541078 884813..885421 1 NC_008593.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 885421 coaE 4541078 coaE Clostridium novyi NT dephospho-CoA kinase YP_877758.1 884813 D 386415 CDS YP_877759.1 118443546 4541944 885418..886023 1 NC_008593.1 identified by match to protein family HMM PF01464; lytic murein transglycosylase 886023 4541944 NT01CX_1679 Clostridium novyi NT lytic murein transglycosylase YP_877759.1 885418 D 386415 CDS YP_877760.1 118443825 4540822 886259..886693 1 NC_008593.1 identified by match to protein family HMM PF01842; hypothetical protein 886693 4540822 NT01CX_1681 Clostridium novyi NT hypothetical protein YP_877760.1 886259 D 386415 CDS YP_877761.1 118444053 4541189 886766..887260 1 NC_008593.1 hypothetical protein 887260 4541189 NT01CX_1682 Clostridium novyi NT hypothetical protein YP_877761.1 886766 D 386415 CDS YP_877762.1 118443014 4540588 887371..887880 1 NC_008593.1 identified by match to protein family HMM PF00583; hypothetical protein 887880 4540588 NT01CX_1683 Clostridium novyi NT hypothetical protein YP_877762.1 887371 D 386415 CDS YP_877763.1 118443310 4540613 887967..888689 1 NC_008593.1 hypothetical protein 888689 4540613 NT01CX_1684 Clostridium novyi NT hypothetical protein YP_877763.1 887967 D 386415 CDS YP_877764.1 118443788 4541131 888835..889095 1 NC_008593.1 hypothetical protein 889095 4541131 NT01CX_1685 Clostridium novyi NT hypothetical protein YP_877764.1 888835 D 386415 CDS YP_877765.1 118443250 4540336 889106..889681 1 NC_008593.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 889681 4540336 NT01CX_1686 Clostridium novyi NT Maf-like protein YP_877765.1 889106 D 386415 CDS YP_877766.1 118444603 4540103 889698..890384 1 NC_008593.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 890384 radC 4540103 radC Clostridium novyi NT DNA repair protein RadC YP_877766.1 889698 D 386415 CDS YP_877767.1 118444487 4539966 890393..891532 1 NC_008593.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 891532 4539966 NT01CX_1688 Clostridium novyi NT rod shape-determining protein MreB YP_877767.1 890393 D 386415 CDS YP_877768.1 118444698 4540218 891543..892400 1 NC_008593.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 892400 mreC 4540218 mreC Clostridium novyi NT rod shape-determining protein MreC YP_877768.1 891543 D 386415 CDS YP_877769.1 118443436 4541957 892397..892888 1 NC_008593.1 identified by match to protein family HMM PF04093; rod shape-determining protein MreD 892888 mreD 4541957 mreD Clostridium novyi NT rod shape-determining protein MreD YP_877769.1 892397 D 386415 CDS YP_877770.1 118443035 4539653 892904..896053 1 NC_008593.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 896053 4539653 NT01CX_1691 Clostridium novyi NT penicillin-binding protein 2 YP_877770.1 892904 D 386415 CDS YP_877771.1 118444526 4540157 896214..896846 1 NC_008593.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 896846 minC 4540157 minC Clostridium novyi NT septum formation inhibitor YP_877771.1 896214 D 386415 CDS YP_877772.1 118444083 4539942 896862..897659 1 NC_008593.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 897659 minD 4539942 minD Clostridium novyi NT septum site-determining protein MinD YP_877772.1 896862 D 386415 CDS YP_877773.1 118443060 4541783 897671..897937 1 NC_008593.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 897937 minE 4541783 minE Clostridium novyi NT cell division topological specificity factor MinE YP_877773.1 897671 D 386415 CDS YP_877774.1 118443862 4541678 898026..899144 1 NC_008593.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 899144 rodA 4541678 rodA Clostridium novyi NT rod shape-determining protein RodA YP_877774.1 898026 D 386415 CDS YP_877775.1 118443478 4540189 899165..899536 1 NC_008593.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 899536 mgsA 4540189 mgsA Clostridium novyi NT methylglyoxal synthase YP_877775.1 899165 D 386415 CDS YP_877776.1 118443041 4539659 complement(899607..900044) 1 NC_008593.1 hypothetical protein 900044 4539659 NT01CX_1697 Clostridium novyi NT hypothetical protein YP_877776.1 899607 R 386415 CDS YP_877777.1 118443507 4541817 complement(900135..901394) 1 NC_008593.1 identified by match to protein family HMM PF02040; NadC/P/Pho87 family protein 901394 4541817 NT01CX_1698 Clostridium novyi NT NadC/P/Pho87 family protein YP_877777.1 900135 R 386415 CDS YP_877778.1 118443000 4540577 complement(901538..902869) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; hydrogenase (Fe) large chain 902869 4540577 NT01CX_1699 Clostridium novyi NT hydrogenase (Fe) large chain YP_877778.1 901538 R 386415 CDS YP_877779.1 118444666 4539665 903172..903648 1 NC_008593.1 hypothetical protein 903648 4539665 NT01CX_1700 Clostridium novyi NT hypothetical protein YP_877779.1 903172 D 386415 CDS YP_877780.1 118444052 4541188 903765..905345 1 NC_008593.1 COG1543; identified by match to protein family HMM PF03065; hypothetical protein 905345 4541188 NT01CX_1701 Clostridium novyi NT hypothetical protein YP_877780.1 903765 D 386415 CDS YP_877781.1 118442924 4540925 905472..906725 1 NC_008593.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 906725 4540925 NT01CX_1702 Clostridium novyi NT M16 family peptidase YP_877781.1 905472 D 386415 CDS YP_877782.1 118443317 4540620 906725..907543 1 NC_008593.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 907543 recX 4540620 recX Clostridium novyi NT recombination regulator RecX YP_877782.1 906725 D 386415 CDS YP_877783.1 118443988 4540377 907536..908720 1 NC_008593.1 identified by match to protein family HMM PF01841; transglutaminase 908720 4540377 NT01CX_1704 Clostridium novyi NT transglutaminase YP_877783.1 907536 D 386415 CDS YP_877784.1 118444497 4539916 complement(908747..909106) 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 909106 4539916 NT01CX_1705 Clostridium novyi NT hypothetical protein YP_877784.1 908747 R 386415 CDS YP_877785.1 118444719 4541518 complement(909213..910022) 1 NC_008593.1 identified by match to protein family HMM PF00528; ABC transporter permease 910022 4541518 NT01CX_1706 Clostridium novyi NT ABC transporter permease YP_877785.1 909213 R 386415 CDS YP_877786.1 118443231 4540325 complement(910015..910779) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 910779 4540325 NT01CX_1707 Clostridium novyi NT ABC transporter ATP-binding protein YP_877786.1 910015 R 386415 CDS YP_877787.1 118443046 4541772 911067..915356 1 NC_008593.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase domain-containing protein 915356 4541772 NT01CX_1708 Clostridium novyi NT CoA-substrate-specific enzyme activase domain-containing protein YP_877787.1 911067 D 386415 CDS YP_877788.1 118443652 4539766 complement(915422..916261) 1 NC_008593.1 ABC transporter substrate-binding protein 916261 4539766 NT01CX_1709 Clostridium novyi NT ABC transporter substrate-binding protein YP_877788.1 915422 R 386415 CDS YP_877789.1 118443906 4541494 complement(916209..917873) 1 NC_008593.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; site-specific recombinases, DNA invertase Pin-like protein 917873 4541494 NT01CX_1710 Clostridium novyi NT site-specific recombinases, DNA invertase Pin-like protein YP_877789.1 916209 R 386415 CDS YP_877790.1 118444281 4539704 918007..918177 1 NC_008593.1 hypothetical protein 918177 4539704 NT01CX_1711 Clostridium novyi NT hypothetical protein YP_877790.1 918007 D 386415 CDS YP_877791.1 118443239 4540329 918289..918906 1 NC_008593.1 hypothetical protein 918906 4540329 NT01CX_1712 Clostridium novyi NT hypothetical protein YP_877791.1 918289 D 386415 CDS YP_877792.1 118443910 4541498 919167..920588 1 NC_008593.1 hypothetical protein 920588 4541498 NT01CX_1713 Clostridium novyi NT hypothetical protein YP_877792.1 919167 D 386415 CDS YP_877793.1 118444085 4539943 920582..921643 1 NC_008593.1 hypothetical protein 921643 4539943 NT01CX_1714 Clostridium novyi NT hypothetical protein YP_877793.1 920582 D 386415 CDS YP_877794.1 118443141 4541693 complement(922289..922954) 1 NC_008593.1 hypothetical protein 922954 4541693 NT01CX_1715 Clostridium novyi NT hypothetical protein YP_877794.1 922289 R 386415 CDS YP_877795.1 118443671 4541001 complement(923145..924680) 1 NC_008593.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; DNA recombinase 924680 4541001 NT01CX_1716 Clostridium novyi NT DNA recombinase YP_877795.1 923145 R 386415 CDS YP_877796.1 118444237 4541530 complement(924616..926127) 1 NC_008593.1 identified by match to protein family HMM PF00239; site-specific recombinases, DNA invertase Pin-like protein 926127 4541530 NT01CX_1717 Clostridium novyi NT site-specific recombinases, DNA invertase Pin-like protein YP_877796.1 924616 R 386415 CDS YP_877797.1 118444196 4541325 complement(926257..926802) 1 NC_008593.1 RNA polymerase sigma factor 926802 4541325 NT01CX_1718 Clostridium novyi NT RNA polymerase sigma factor YP_877797.1 926257 R 386415 CDS YP_877798.1 118444682 4539679 complement(926903..927307) 1 NC_008593.1 identified by match to protein family HMM PF01381; helix-turn-helix domain-containing protein 927307 4539679 NT01CX_1719 Clostridium novyi NT helix-turn-helix domain-containing protein YP_877798.1 926903 R 386415 CDS YP_877799.1 118442864 4541989 927562..929088 1 NC_008593.1 hypothetical protein 929088 4541989 NT01CX_1720 Clostridium novyi NT hypothetical protein YP_877799.1 927562 D 386415 CDS YP_877800.1 118443497 4541809 complement(929481..929729) 1 NC_008593.1 ABC transporter substrate-binding protein 929729 4541809 NT01CX_1721 Clostridium novyi NT ABC transporter substrate-binding protein YP_877800.1 929481 R 386415 CDS YP_877801.1 118443164 4540307 929790..930233 1 NC_008593.1 hypothetical protein 930233 4540307 NT01CX_1722 Clostridium novyi NT hypothetical protein YP_877801.1 929790 D 386415 CDS YP_877802.1 118443597 4539975 930488..931021 1 NC_008593.1 lipoprotein 931021 4539975 NT01CX_1723 Clostridium novyi NT lipoprotein YP_877802.1 930488 D 386415 CDS YP_877803.1 118444267 4541645 931095..932012 1 NC_008593.1 identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 932012 4541645 NT01CX_1724 Clostridium novyi NT xylanase/chitin deacetylase YP_877803.1 931095 D 386415 CDS YP_877804.1 118444180 4540845 932347..933270 1 NC_008593.1 identified by match to protein family HMM PF00294; 1-phosphofructokinase 933270 4540845 NT01CX_1725 Clostridium novyi NT 1-phosphofructokinase YP_877804.1 932347 D 386415 CDS YP_877805.1 118443636 4541864 complement(933318..933848) 1 NC_008593.1 inactivated, HRDL motif absent; serine/threonine kinase related protein 933848 4541864 NT01CX_1726 Clostridium novyi NT serine/threonine kinase related protein YP_877805.1 933318 R 386415 CDS YP_877806.1 118443167 4540310 934272..936911 1 NC_008593.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 936911 valS 4540310 valS Clostridium novyi NT valyl-tRNA synthetase YP_877806.1 934272 D 386415 CDS YP_877807.1 118444051 4541187 936987..937139 1 NC_008593.1 hypothetical protein 937139 4541187 NT01CX_1728 Clostridium novyi NT hypothetical protein YP_877807.1 936987 D 386415 CDS YP_877808.1 118443545 4541943 937177..938487 1 NC_008593.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase 938487 4541943 NT01CX_1729 Clostridium novyi NT folylpolyglutamate synthase YP_877808.1 937177 D 386415 CDS YP_877809.1 118443011 4540586 complement(938534..939640) 1 NC_008593.1 identified by match to protein family HMM PF01594; permease 939640 4540586 NT01CX_1730 Clostridium novyi NT permease YP_877809.1 938534 R 386415 CDS YP_877810.1 118444369 4540456 939648..939791 1 NC_008593.1 hypothetical protein 939791 4540456 NT01CX_1731 Clostridium novyi NT hypothetical protein YP_877810.1 939648 D 386415 CDS YP_877811.1 118443340 4539854 940034..940639 1 NC_008593.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 940639 4539854 NT01CX_1732 Clostridium novyi NT 3-methyladenine DNA glycosylase YP_877811.1 940034 D 386415 CDS YP_877812.1 118442923 4540924 complement(940774..941031) 1 NC_008593.1 hypothetical protein 941031 4540924 NT01CX_1733 Clostridium novyi NT hypothetical protein YP_877812.1 940774 R 386415 CDS YP_877813.1 118443221 4539637 941171..942055 1 NC_008593.1 hypothetical protein 942055 4539637 NT01CX_1734 Clostridium novyi NT hypothetical protein YP_877813.1 941171 D 386415 CDS YP_877814.1 118444693 4540214 complement(942064..942588) 1 NC_008593.1 hypothetical protein 942588 4540214 NT01CX_1735 Clostridium novyi NT hypothetical protein YP_877814.1 942064 R 386415 CDS YP_877815.1 118443920 4541504 942796..943566 1 NC_008593.1 identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 943566 4541504 NT01CX_1736 Clostridium novyi NT xylanase/chitin deacetylase YP_877815.1 942796 D 386415 CDS YP_877816.1 118443634 4541862 943744..944406 1 NC_008593.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 944406 4541862 NT01CX_1737 Clostridium novyi NT single-stranded DNA-binding protein YP_877816.1 943744 D 386415 CDS YP_877817.1 118444304 4540792 complement(944438..945148) 1 NC_008593.1 identified by match to protein family HMM PF00132; tetrahydrodipicolinate N-succinyltransferase 945148 4540792 NT01CX_1738 Clostridium novyi NT tetrahydrodipicolinate N-succinyltransferase YP_877817.1 944438 R 386415 CDS YP_877818.1 118443938 4540275 945376..946530 1 NC_008593.1 identified by match to protein family HMM PF00155; class I aminotransferase 946530 4540275 NT01CX_1739 Clostridium novyi NT class I aminotransferase YP_877818.1 945376 D 386415 CDS YP_877819.1 118444178 4540843 946907..948616 1 NC_008593.1 identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic protein 948616 4540843 NT01CX_1740 Clostridium novyi NT peptide ABC transporter periplasmic protein YP_877819.1 946907 D 386415 CDS YP_877820.1 118442885 4541968 948768..949718 1 NC_008593.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease 949718 4541968 NT01CX_1741 Clostridium novyi NT peptide ABC transporter permease YP_877820.1 948768 D 386415 CDS YP_877821.1 118444721 4541519 949731..950648 1 NC_008593.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease 950648 4541519 NT01CX_1742 Clostridium novyi NT peptide ABC transporter permease YP_877821.1 949731 D 386415 CDS YP_877822.1 118444193 4541323 950661..951686 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATPase 951686 4541323 NT01CX_1743 Clostridium novyi NT peptide ABC transporter ATPase YP_877822.1 950661 D 386415 CDS YP_877823.1 118443681 4541009 951679..952656 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATPase 952656 4541009 NT01CX_1744 Clostridium novyi NT peptide ABC transporter ATPase YP_877823.1 951679 D 386415 CDS YP_877824.1 118444171 4540837 complement(952821..953579) 1 NC_008593.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 953579 dapB 4540837 dapB Clostridium novyi NT dihydrodipicolinate reductase YP_877824.1 952821 R 386415 CDS YP_877825.1 118444011 4540644 complement(953584..954474) 1 NC_008593.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 954474 dapA 4540644 dapA Clostridium novyi NT dihydrodipicolinate synthase YP_877825.1 953584 R 386415 CDS YP_877826.1 118443105 4541762 complement(954496..955488) 1 NC_008593.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 955488 4541762 NT01CX_1747 Clostridium novyi NT aspartate-semialdehyde dehydrogenase YP_877826.1 954496 R 386415 CDS YP_877827.1 118442950 4539620 955824..956084 1 NC_008593.1 small acid-soluble spore protein 956084 4539620 NT01CX_1748 Clostridium novyi NT small acid-soluble spore protein YP_877827.1 955824 D 386415 CDS YP_877828.1 118444419 4541220 956202..956942 1 NC_008593.1 S-adenosylmethionine-dependent methyltransferase 956942 4541220 NT01CX_1749 Clostridium novyi NT S-adenosylmethionine-dependent methyltransferase YP_877828.1 956202 D 386415 CDS YP_877829.1 118444159 4541240 956954..957838 1 NC_008593.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 957838 hslO 4541240 hslO Clostridium novyi NT Hsp33-like chaperonin YP_877829.1 956954 D 386415 CDS YP_877830.1 118443767 4541042 959020..959919 1 NC_008593.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 959919 4541042 NT01CX_1757 Clostridium novyi NT HNH endonuclease domain-containing protein YP_877830.1 959020 D 386415 CDS YP_877831.1 118443093 4541753 complement(960028..960732) 1 NC_008593.1 hypothetical protein 960732 4541753 NT01CX_1758 Clostridium novyi NT hypothetical protein YP_877831.1 960028 R 386415 CDS YP_877832.1 118444614 4539583 960855..961712 1 NC_008593.1 hypothetical protein 961712 4539583 NT01CX_1759 Clostridium novyi NT hypothetical protein YP_877832.1 960855 D 386415 CDS YP_877833.1 118444060 4541193 962100..964013 1 NC_008593.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 964013 thrS 4541193 thrS Clostridium novyi NT threonyl-tRNA synthetase YP_877833.1 962100 D 386415 CDS YP_877834.1 118444421 4540130 964371..964775 1 NC_008593.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; translation initiation factor IF-3 964775 4540130 NT01CX_1761 Clostridium novyi NT translation initiation factor IF-3 YP_877834.1 964371 D 386415 CDS YP_877835.1 118443181 4540322 964794..964991 1 NC_008593.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 964991 rpmI 4540322 rpmI Clostridium novyi NT 50S ribosomal protein L35 YP_877835.1 964794 D 386415 CDS YP_877836.1 118443763 4541038 965021..965380 1 NC_008593.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 965380 rplT 4541038 rplT Clostridium novyi NT 50S ribosomal protein L20 YP_877836.1 965021 D 386415 CDS YP_877837.1 118444204 4541333 965480..966814 1 NC_008593.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transport protein 966814 4541333 NT01CX_1764 Clostridium novyi NT potassium transport protein YP_877837.1 965480 D 386415 CDS YP_877838.1 118443908 4541496 966818..967489 1 NC_008593.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; trk system potassium uptake protein trkA 967489 4541496 NT01CX_1765 Clostridium novyi NT trk system potassium uptake protein trkA YP_877838.1 966818 D 386415 CDS YP_877839.1 118444322 4540806 967500..968288 1 NC_008593.1 similar to YSGA B. subtilis; identified by match to protein family HMM PF00588; rRNA methylase 968288 4540806 NT01CX_1766 Clostridium novyi NT rRNA methylase YP_877839.1 967500 D 386415 CDS YP_877840.1 118443063 4541786 968637..969656 1 NC_008593.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 969656 pheS 4541786 pheS Clostridium novyi NT phenylalanyl-tRNA synthetase subunit alpha YP_877840.1 968637 D 386415 CDS YP_877841.1 118443659 4539771 969686..972061 1 NC_008593.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 972061 pheT 4539771 pheT Clostridium novyi NT phenylalanyl-tRNA synthetase subunit beta YP_877841.1 969686 D 386415 CDS YP_877842.1 118443515 4541823 972139..972732 1 NC_008593.1 identified by match to protein family HMM PF05164; hypothetical protein 972732 4541823 NT01CX_1769 Clostridium novyi NT hypothetical protein YP_877842.1 972139 D 386415 CDS YP_877843.1 118443796 4541137 973357..973962 1 NC_008593.1 hypothetical protein 973962 4541137 NT01CX_1770 Clostridium novyi NT hypothetical protein YP_877843.1 973357 D 386415 CDS YP_877844.1 118443104 4541761 complement(974053..974628) 1 NC_008593.1 identified by match to protein family HMM PF00080; superoxide dismutase 974628 4541761 NT01CX_1771 Clostridium novyi NT superoxide dismutase YP_877844.1 974053 R 386415 CDS YP_877845.1 118443955 4540748 974779..977124 1 NC_008593.1 identified by match to protein family HMM PF01136; protease 977124 4540748 NT01CX_1772 Clostridium novyi NT protease YP_877845.1 974779 D 386415 CDS YP_877846.1 118444471 4539953 977126..979483 1 NC_008593.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 979483 4539953 NT01CX_1773 Clostridium novyi NT recombination and DNA strand exchange inhibitor protein YP_877846.1 977126 D 386415 CDS YP_877847.1 118442921 4540923 979507..979977 1 NC_008593.1 identified by match to protein family HMM PF04463; hypothetical protein 979977 4540923 NT01CX_1774 Clostridium novyi NT hypothetical protein YP_877847.1 979507 D 386415 CDS YP_877848.1 118443386 4541286 980004..980597 1 NC_008593.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 980597 4541286 NT01CX_1775 Clostridium novyi NT 50S ribosomal protein L25/general stress protein Ctc YP_877848.1 980004 D 386415 CDS YP_877849.1 118444174 4540840 980731..982473 1 NC_008593.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 982473 4540840 NT01CX_1776 Clostridium novyi NT phosphomannomutase YP_877849.1 980731 D 386415 CDS YP_877850.1 118444531 4540161 982686..983765 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 983765 4540161 NT01CX_1777 Clostridium novyi NT hypothetical protein YP_877850.1 982686 D 386415 CDS YP_877851.1 118443279 4541069 983804..984718 1 NC_008593.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 984718 galU 4541069 galU Clostridium novyi NT UTP-glucose-1-phosphate uridylyltransferase YP_877851.1 983804 D 386415 CDS YP_877852.1 118443926 4541509 984895..986733 1 NC_008593.1 identified by match to protein family HMM PF02719; polysaccharide biosynthesis family protein 986733 4541509 NT01CX_1779 Clostridium novyi NT polysaccharide biosynthesis family protein YP_877852.1 984895 D 386415 CDS YP_877853.1 118444089 4539947 986912..988228 1 NC_008593.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase 988228 4539947 NT01CX_1780 Clostridium novyi NT UDP-glucose 6-dehydrogenase YP_877853.1 986912 D 386415 CDS YP_877854.1 118443697 4540235 988290..989402 1 NC_008593.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; lipopolysaccharide biosynthesis protein 989402 4540235 NT01CX_1781 Clostridium novyi NT lipopolysaccharide biosynthesis protein YP_877854.1 988290 D 386415 CDS YP_877855.1 118444111 4540046 989422..990162 1 NC_008593.1 identified by match to protein family HMM PF00132; acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine acyltransferase 990162 4540046 NT01CX_1782 Clostridium novyi NT acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine acyltransferase YP_877855.1 989422 D 386415 CDS YP_877856.1 118442877 4542000 990337..991047 1 NC_008593.1 acylneuraminate cytidylyltransferase 991047 4542000 NT01CX_1783 Clostridium novyi NT acylneuraminate cytidylyltransferase YP_877856.1 990337 D 386415 CDS YP_877857.1 118443277 4541068 991040..992098 1 NC_008593.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 992098 4541068 NT01CX_1784 Clostridium novyi NT sialic acid synthase YP_877857.1 991040 D 386415 CDS YP_877858.1 118444030 4540660 992117..993265 1 NC_008593.1 identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 993265 4540660 NT01CX_1785 Clostridium novyi NT UDP-N-acetylglucosamine 2-epimerase YP_877858.1 992117 D 386415 CDS YP_877859.1 118444447 4540148 993300..993938 1 NC_008593.1 identified by match to protein family HMM PF00132; hexapeptide transferase family protein 993938 4540148 NT01CX_1786 Clostridium novyi NT hexapeptide transferase family protein YP_877859.1 993300 D 386415 CDS YP_877860.1 118443180 4540321 993946..994992 1 NC_008593.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571; sugar-phosphate nucleotide transferase 994992 4540321 NT01CX_1787 Clostridium novyi NT sugar-phosphate nucleotide transferase YP_877860.1 993946 D 386415 CDS YP_877861.1 118443711 4540501 995017..996012 1 NC_008593.1 identified by match to protein family HMM PF01370; UDP-glucose 4-epimerase 996012 4540501 NT01CX_1788 Clostridium novyi NT UDP-glucose 4-epimerase YP_877861.1 995017 D 386415 CDS YP_877862.1 118443983 4540372 996027..997124 1 NC_008593.1 identified by match to protein family HMM PF01041; perosamine synthetase 997124 4540372 NT01CX_1789 Clostridium novyi NT perosamine synthetase YP_877862.1 996027 D 386415 CDS YP_877863.1 118444529 4540159 997249..998796 1 NC_008593.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 998796 mviN 4540159 mviN Clostridium novyi NT integral membrane protein MviN YP_877863.1 997249 D 386415 CDS YP_877864.1 118443881 4540425 998818..1000173 1 NC_008593.1 hypothetical protein 1000173 4540425 NT01CX_1791 Clostridium novyi NT hypothetical protein YP_877864.1 998818 D 386415 CDS YP_877865.1 118444429 4540138 1000204..1001328 1 NC_008593.1 glycosyl transferase family protein 1001328 4540138 NT01CX_1792 Clostridium novyi NT glycosyl transferase family protein YP_877865.1 1000204 D 386415 CDS YP_877866.1 118444320 4540804 1001330..1002421 1 NC_008593.1 identified by match to protein family HMM PF00534; glycoside hydrolase 1002421 4540804 NT01CX_1793 Clostridium novyi NT glycoside hydrolase YP_877866.1 1001330 D 386415 CDS YP_877867.1 118442964 4539731 1002469..1003953 1 NC_008593.1 hypothetical protein 1003953 4539731 NT01CX_1794 Clostridium novyi NT hypothetical protein YP_877867.1 1002469 D 386415 CDS YP_877868.1 118443729 4540514 1003982..1005007 1 NC_008593.1 identified by match to protein family HMM PF00535; succinoglycan biosynthesis protein exoA 1005007 4540514 NT01CX_1795 Clostridium novyi NT succinoglycan biosynthesis protein exoA YP_877868.1 1003982 D 386415 CDS YP_877869.1 118444131 4540981 1005103..1006374 1 NC_008593.1 identified by match to protein family HMM PF04932; membrane protein 1006374 4540981 NT01CX_1796 Clostridium novyi NT membrane protein YP_877869.1 1005103 D 386415 CDS YP_877870.1 118444056 4541191 1006414..1007067 1 NC_008593.1 identified by match to protein family HMM PF02397; undecaprenyl-phosphate glucosephosphotransferase 1007067 4541191 NT01CX_1797 Clostridium novyi NT undecaprenyl-phosphate glucosephosphotransferase YP_877870.1 1006414 D 386415 CDS YP_877871.1 118443066 4541787 1007074..1007805 1 NC_008593.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; teichoic acid biosynthesis protein A 1007805 4541787 NT01CX_1798 Clostridium novyi NT teichoic acid biosynthesis protein A YP_877871.1 1007074 D 386415 CDS YP_877872.1 118443458 4541896 1007828..1009237 1 NC_008593.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1009237 4541896 NT01CX_1799 Clostridium novyi NT polysaccharide biosynthesis protein YP_877872.1 1007828 D 386415 CDS YP_877873.1 118443868 4541683 1009262..1010386 1 NC_008593.1 identified by match to protein family HMM PF00534; glycosyltransferase 1010386 4541683 NT01CX_1800 Clostridium novyi NT glycosyltransferase YP_877873.1 1009262 D 386415 CDS YP_877874.1 118444280 4539703 1010448..1011026 1 NC_008593.1 identified by match to protein family HMM PF00881; nitroreductase family protein 1011026 noxC 4539703 noxC Clostridium novyi NT nitroreductase family protein YP_877874.1 1010448 D 386415 CDS YP_877875.1 118444663 4539662 1011201..1011839 1 NC_008593.1 identified by match to protein family HMM PF04961; formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase 1011839 4539662 NT01CX_1802 Clostridium novyi NT formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase YP_877875.1 1011201 D 386415 CDS YP_877876.1 118442884 4541967 1011854..1013626 1 NC_008593.1 type IIS restriction enzyme R and M protein 1013626 4541967 NT01CX_1803 Clostridium novyi NT type IIS restriction enzyme R and M protein YP_877876.1 1011854 D 386415 CDS YP_877877.1 118444491 4539969 1013747..1014082 1 NC_008593.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma F factor antagonist 1014082 4539969 NT01CX_1804 Clostridium novyi NT anti-sigma F factor antagonist YP_877877.1 1013747 D 386415 CDS YP_877878.1 118443962 4540754 1014097..1014528 1 NC_008593.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 1014528 spoIIAB 4540754 spoIIAB Clostridium novyi NT anti-sigma F factor YP_877878.1 1014097 D 386415 CDS YP_877879.1 118443643 4539759 1014574..1015329 1 NC_008593.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 1015329 4539759 NT01CX_1806 Clostridium novyi NT sporulation sigma factor SigF YP_877879.1 1014574 D 386415 CDS YP_877880.1 118443287 4541910 1015452..1015904 1 NC_008593.1 identified by match to protein family HMM PF03862; stage V sporulation protein AC 1015904 4541910 NT01CX_1807 Clostridium novyi NT stage V sporulation protein AC YP_877880.1 1015452 D 386415 CDS YP_877881.1 118444664 4539663 1015938..1016966 1 NC_008593.1 identified by match to protein family HMM PF07451; stage V sporulation protein AD 1016966 4539663 NT01CX_1808 Clostridium novyi NT stage V sporulation protein AD YP_877881.1 1015938 D 386415 CDS YP_877882.1 118443380 4541280 1016968..1017324 1 NC_008593.1 identified by match to protein family HMM PF03862; stage V sporulation protein AE 1017324 4541280 NT01CX_1809 Clostridium novyi NT stage V sporulation protein AE YP_877882.1 1016968 D 386415 CDS YP_877883.1 118442903 4540909 complement(1017428..1020019) 1 NC_008593.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1A/1B 1020019 ponA 4540909 ponA Clostridium novyi NT penicillin-binding protein 1A/1B YP_877883.1 1017428 R 386415 CDS YP_877884.1 118443443 4541961 complement(1020218..1020745) 1 NC_008593.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 1020745 4541961 NT01CX_1811 Clostridium novyi NT hypoxanthine phosphoribosyltransferase YP_877884.1 1020218 R 386415 CDS YP_877885.1 118443053 4541777 1020882..1021004 1 NC_008593.1 hypothetical protein 1021004 4541777 NT01CX_1812 Clostridium novyi NT hypothetical protein YP_877885.1 1020882 D 386415 CDS YP_877886.1 118444403 4541205 1021111..1022895 1 NC_008593.1 identified by match to protein family HMM TIGR00231; GTP-binding protein 1022895 4541205 NT01CX_1813 Clostridium novyi NT GTP-binding protein YP_877886.1 1021111 D 386415 CDS YP_877887.1 118443924 4541507 1022936..1024219 1 NC_008593.1 identified by match to protein family HMM PF01979; chlorohydrolase 1024219 trzA 4541507 trzA Clostridium novyi NT chlorohydrolase YP_877887.1 1022936 D 386415 CDS YP_877888.1 118443382 4541282 1024268..1025167 1 NC_008593.1 identified by match to protein family HMM PF01909; hypothetical protein 1025167 4541282 NT01CX_1815 Clostridium novyi NT hypothetical protein YP_877888.1 1024268 D 386415 CDS YP_877889.1 118443318 4540621 1025227..1026651 1 NC_008593.1 identified by match to protein family HMM PF00392; MocR family transcriptional regulator 1026651 4540621 NT01CX_1816 Clostridium novyi NT MocR family transcriptional regulator YP_877889.1 1025227 D 386415 CDS YP_877890.1 118444352 4540574 1026648..1027352 1 NC_008593.1 identified by match to protein family HMM PF03130; hypothetical protein 1027352 4540574 NT01CX_1817 Clostridium novyi NT hypothetical protein YP_877890.1 1026648 D 386415 CDS YP_877891.1 118444116 4540967 1027349..1028011 1 NC_008593.1 identified by match to protein family HMM PF01205; thymidylate synthase 1028011 4540967 NT01CX_1818 Clostridium novyi NT thymidylate synthase YP_877891.1 1027349 D 386415 CDS YP_877892.1 118443572 4541870 1028122..1028862 1 NC_008593.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1028862 4541870 NT01CX_1819 Clostridium novyi NT hypothetical protein YP_877892.1 1028122 D 386415 CDS YP_877893.1 118443501 4541812 1029367..1029846 1 NC_008593.1 pemK family DNA-binding protein 1029846 4541812 NT01CX_1820 Clostridium novyi NT pemK family DNA-binding protein YP_877893.1 1029367 D 386415 CDS YP_877894.1 118443642 4539758 1030337..1030438 1 NC_008593.1 hypothetical protein 1030438 4539758 NT01CX_1821 Clostridium novyi NT hypothetical protein YP_877894.1 1030337 D 386415 CDS YP_877895.1 118443094 4541754 1030964..1031278 1 NC_008593.1 hypothetical protein 1031278 4541754 NT01CX_1822 Clostridium novyi NT hypothetical protein YP_877895.1 1030964 D 386415 CDS YP_877896.1 118444311 4540796 1031508..1032764 1 NC_008593.1 identified by match to protein family HMM PF02447; gluconate permease 1032764 4540796 NT01CX_1823 Clostridium novyi NT gluconate permease YP_877896.1 1031508 D 386415 CDS YP_877897.1 118443944 4540281 1032969..1034696 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 1034696 4540281 NT01CX_1824 Clostridium novyi NT ABC transporter ATP-binding protein YP_877897.1 1032969 D 386415 CDS YP_877898.1 118443732 4540517 1034693..1036552 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug ABC transporter ATPase 1036552 4540517 NT01CX_1825 Clostridium novyi NT multidrug ABC transporter ATPase YP_877898.1 1034693 D 386415 CDS YP_877899.1 118443300 4541920 complement(1036601..1037044) 1 NC_008593.1 similar to YTFJ B. subtilis; hypothetical protein 1037044 4541920 NT01CX_1826 Clostridium novyi NT hypothetical protein YP_877899.1 1036601 R 386415 CDS YP_877900.1 118443020 4540593 complement(1037109..1037648) 1 NC_008593.1 membrane associated protein 1037648 4540593 NT01CX_1827 Clostridium novyi NT membrane associated protein YP_877900.1 1037109 R 386415 CDS YP_877901.1 118444387 4541248 complement(1037771..1039144) 1 NC_008593.1 identified by match to protein family HMM PF07670; membrane protein 1039144 4541248 NT01CX_1828 Clostridium novyi NT membrane protein YP_877901.1 1037771 R 386415 CDS YP_877902.1 118444130 4540980 1039344..1039712 1 NC_008593.1 hypothetical protein 1039712 4540980 NT01CX_1829 Clostridium novyi NT hypothetical protein YP_877902.1 1039344 D 386415 CDS YP_877903.1 118443461 4541899 1039794..1040639 1 NC_008593.1 hypothetical protein 1040639 4541899 NT01CX_1830 Clostridium novyi NT hypothetical protein YP_877903.1 1039794 D 386415 CDS YP_877904.1 118443971 4540762 1040761..1041384 1 NC_008593.1 hypothetical protein 1041384 4540762 NT01CX_1831 Clostridium novyi NT hypothetical protein YP_877904.1 1040761 D 386415 CDS YP_877905.1 118444147 4541231 1041461..1042108 1 NC_008593.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1042108 ruvA 4541231 ruvA Clostridium novyi NT Holliday junction DNA helicase RuvA YP_877905.1 1041461 D 386415 CDS YP_877906.1 118444048 4541185 1042120..1043133 1 NC_008593.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1043133 ruvB 4541185 ruvB Clostridium novyi NT Holliday junction DNA helicase RuvB YP_877906.1 1042120 D 386415 CDS YP_877907.1 118444595 4540095 1043139..1044173 1 NC_008593.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1044173 queA 4540095 queA Clostridium novyi NT S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_877907.1 1043139 D 386415 CDS YP_877908.1 118443224 4539638 1044202..1045350 1 NC_008593.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1045350 tgt 4539638 tgt Clostridium novyi NT queuine tRNA-ribosyltransferase YP_877908.1 1044202 D 386415 CDS YP_877909.1 118443687 4540227 1045403..1045684 1 NC_008593.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1045684 yajC 4540227 yajC Clostridium novyi NT preprotein translocase subunit YajC YP_877909.1 1045403 D 386415 CDS YP_877910.1 118443769 4541044 1045739..1046107 1 NC_008593.1 hypothetical protein 1046107 4541044 NT01CX_1837 Clostridium novyi NT hypothetical protein YP_877910.1 1045739 D 386415 CDS YP_877911.1 118443830 4540827 1046182..1046319 1 NC_008593.1 hypothetical protein 1046319 4540827 NT01CX_1838 Clostridium novyi NT hypothetical protein YP_877911.1 1046182 D 386415 CDS YP_877912.1 118444426 4540135 1046463..1047758 1 NC_008593.1 identified by match to protein family HMM PF04055; Heme biosynthesis 1047758 nirJ 4540135 nirJ Clostridium novyi NT Heme biosynthesis YP_877912.1 1046463 D 386415 CDS YP_877913.1 118442948 4539618 1047849..1049114 1 NC_008593.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1049114 secD 4539618 secD Clostridium novyi NT preprotein translocase subunit SecD YP_877913.1 1047849 D 386415 CDS YP_877914.1 118444068 4541199 1049120..1049989 1 NC_008593.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1049989 secF 4541199 secF Clostridium novyi NT preprotein translocase subunit SecF YP_877914.1 1049120 D 386415 CDS YP_877915.1 118443781 4541051 1050179..1051057 1 NC_008593.1 identified by match to protein family HMM PF01368; single-stranded-DNA-specific exonuclease RecJ 1051057 4541051 NT01CX_1842 Clostridium novyi NT single-stranded-DNA-specific exonuclease RecJ YP_877915.1 1050179 D 386415 CDS YP_877916.1 118443175 4540316 1051097..1051615 1 NC_008593.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1051615 4540316 NT01CX_1843 Clostridium novyi NT adenine phosphoribosyltransferase YP_877916.1 1051097 D 386415 CDS YP_877917.1 118444430 4540139 1051716..1053905 1 NC_008593.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1053905 4540139 NT01CX_1844 Clostridium novyi NT GTP pyrophosphokinase YP_877917.1 1051716 D 386415 CDS YP_877918.1 118443483 4540194 1053960..1054409 1 NC_008593.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1054409 4540194 NT01CX_1845 Clostridium novyi NT D-tyrosyl-tRNA(Tyr) deacylase YP_877918.1 1053960 D 386415 CDS YP_877919.1 118444608 4540106 1054436..1055035 1 NC_008593.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1055035 4540106 NT01CX_1846 Clostridium novyi NT metallo-beta-lactamase family protein YP_877919.1 1054436 D 386415 CDS YP_877920.1 118444631 4539596 1055054..1056487 1 NC_008593.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1056487 4539596 NT01CX_1847 Clostridium novyi NT coproporphyrinogen III oxidase YP_877920.1 1055054 D 386415 CDS YP_877921.1 118444233 4541527 1056501..1057751 1 NC_008593.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1057751 hisS 4541527 hisS Clostridium novyi NT histidyl-tRNA synthetase YP_877921.1 1056501 D 386415 CDS YP_877922.1 118443262 4541056 1057769..1059550 1 NC_008593.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1059550 aspS 4541056 aspS Clostridium novyi NT aspartyl-tRNA synthetase YP_877922.1 1057769 D 386415 CDS YP_877923.1 118443693 4540232 1059847..1060119 1 NC_008593.1 COG1937 family; identified by match to protein family HMM PF02583; hypothetical protein 1060119 4540232 NT01CX_1850 Clostridium novyi NT hypothetical protein YP_877923.1 1059847 D 386415 CDS YP_877924.1 118444524 4540155 complement(1060109..1060546) 1 NC_008593.1 membrane spanning protein 1060546 4540155 NT01CX_1851 Clostridium novyi NT membrane spanning protein YP_877924.1 1060109 R 386415 CDS YP_877925.1 118443312 4540615 complement(1060548..1061324) 1 NC_008593.1 identified by match to protein family HMM PF06738; membrane spanning protein 1061324 4540615 NT01CX_1852 Clostridium novyi NT membrane spanning protein YP_877925.1 1060548 R 386415 CDS YP_877926.1 118444029 4540659 1061478..1062713 1 NC_008593.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1062713 glyA 4540659 glyA Clostridium novyi NT serine hydroxymethyltransferase YP_877926.1 1061478 D 386415 CDS YP_877927.1 118443355 4541831 1063225..1066731 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1066731 nifJ 4541831 nifJ Clostridium novyi NT pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_877927.1 1063225 D 386415 CDS YP_877928.1 118444512 4539928 1066910..1067272 1 NC_008593.1 hypothetical protein 1067272 4539928 NT01CX_1855 Clostridium novyi NT hypothetical protein YP_877928.1 1066910 D 386415 CDS YP_877929.1 118444088 4539946 1067342..1067983 1 NC_008593.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 1067983 4539946 NT01CX_1856 Clostridium novyi NT HAD family hydrolase YP_877929.1 1067342 D 386415 CDS YP_877930.1 118444244 4541537 1067996..1068817 1 NC_008593.1 identified by match to protein family HMM PF01063; branched-chain amino acid aminotransferase 1068817 4541537 NT01CX_1857 Clostridium novyi NT branched-chain amino acid aminotransferase YP_877930.1 1067996 D 386415 CDS YP_877931.1 118443787 4541130 1068919..1070886 1 NC_008593.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system transporter subunit IIABC 1070886 4541130 NT01CX_1858 Clostridium novyi NT PTS system transporter subunit IIABC YP_877931.1 1068919 D 386415 CDS YP_877932.1 118443255 4540341 1071087..1073054 1 NC_008593.1 identified by match to protein family HMM PF03961; hypothetical protein 1073054 4540341 NT01CX_1859 Clostridium novyi NT hypothetical protein YP_877932.1 1071087 D 386415 CDS YP_877933.1 118444283 4539706 1073067..1073519 1 NC_008593.1 identified by match to protein family HMM PF01584; chemotaxis protein CheW 1073519 cheW 4539706 cheW Clostridium novyi NT chemotaxis protein CheW YP_877933.1 1073067 D 386415 CDS YP_877934.1 118442983 4541081 1073529..1074017 1 NC_008593.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1074017 4541081 NT01CX_1861 Clostridium novyi NT chemoreceptor glutamine deamidase CheD YP_877934.1 1073529 D 386415 CDS YP_877935.1 118444455 4540055 1074033..1075094 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 1075094 4540055 NT01CX_1862 Clostridium novyi NT protein-glutamate methylesterase CheB YP_877935.1 1074033 D 386415 CDS YP_877936.1 118444561 4540400 1075097..1075864 1 NC_008593.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein CheR 1075864 4540400 NT01CX_1863 Clostridium novyi NT chemotaxis protein CheR YP_877936.1 1075097 D 386415 CDS YP_877937.1 118444148 4541232 1075877..1077940 1 NC_008593.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA 1077940 cheA 4541232 cheA Clostridium novyi NT chemotaxis protein CheA YP_877937.1 1075877 D 386415 CDS YP_877938.1 118444535 4540164 1077953..1078555 1 NC_008593.1 identified by match to protein family HMM PF04509; chemotaxis protein CheC 1078555 4540164 NT01CX_1865 Clostridium novyi NT chemotaxis protein CheC YP_877938.1 1077953 D 386415 CDS YP_877939.1 118444113 4540048 1078571..1078930 1 NC_008593.1 identified by match to protein family HMM PF00072; chemotaxis protein CheY 1078930 4540048 NT01CX_1866 Clostridium novyi NT chemotaxis protein CheY YP_877939.1 1078571 D 386415 CDS YP_877940.1 118443700 4540238 1078972..1079370 1 NC_008593.1 identified by match to protein family HMM PF01584; chemotaxis protein CheW 1079370 cheW 4540238 cheW Clostridium novyi NT chemotaxis protein CheW YP_877940.1 1078972 D 386415 CDS YP_877941.1 118443285 4541908 1079391..1080386 1 NC_008593.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 1080386 fliM 4541908 fliM Clostridium novyi NT flagellar motor switch protein FliM YP_877941.1 1079391 D 386415 CDS YP_877942.1 118444449 4540050 1080379..1081569 1 NC_008593.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1081569 4540050 NT01CX_1869 Clostridium novyi NT flagellar motor switch protein YP_877942.1 1080379 D 386415 CDS YP_877943.1 118444600 4540100 1081779..1082039 1 NC_008593.1 identified by match to protein family HMM PF04316; flagellin synthesis regulator FlgM 1082039 4540100 NT01CX_1870 Clostridium novyi NT flagellin synthesis regulator FlgM YP_877943.1 1081779 D 386415 CDS YP_877944.1 118443999 4540633 1082144..1082542 1 NC_008593.1 hypothetical protein 1082542 4540633 NT01CX_1871 Clostridium novyi NT hypothetical protein YP_877944.1 1082144 D 386415 CDS YP_877945.1 118444348 4540571 1082564..1084594 1 NC_008593.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook-associated protein 1 1084594 4540571 NT01CX_1872 Clostridium novyi NT flagellar hook-associated protein 1 YP_877945.1 1082564 D 386415 CDS YP_877946.1 118443899 4540440 1084625..1085602 1 NC_008593.1 identified by match to protein family HMM PF00669; flagellar hook-associated protein 3 1085602 4540440 NT01CX_1873 Clostridium novyi NT flagellar hook-associated protein 3 YP_877946.1 1084625 D 386415 CDS YP_877947.1 118444345 4540568 1085677..1086108 1 NC_008593.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1086108 4540568 NT01CX_1874 Clostridium novyi NT flagellar assembly protein FliW YP_877947.1 1085677 D 386415 CDS YP_877948.1 118443316 4540619 1086108..1086326 1 NC_008593.1 identified by match to protein family HMM TIGR00202; carbon storage regulator 1086326 csrA 4540619 csrA Clostridium novyi NT carbon storage regulator YP_877948.1 1086108 D 386415 CDS YP_877949.1 118443600 4539977 1086376..1086753 1 NC_008593.1 similar to YVYC B. subtilis; identified by match to protein family HMM PF03646; flagellin family protein 1086753 4539977 NT01CX_1876 Clostridium novyi NT flagellin family protein YP_877949.1 1086376 D 386415 CDS YP_877950.1 118444143 4541227 1086780..1087067 1 NC_008593.1 hypothetical protein 1087067 4541227 NT01CX_1877 Clostridium novyi NT hypothetical protein YP_877950.1 1086780 D 386415 CDS YP_877951.1 118443960 4540753 1087104..1087490 1 NC_008593.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 1087490 fliS 4540753 fliS Clostridium novyi NT flagellar protein FliS YP_877951.1 1087104 D 386415 CDS YP_877952.1 118444483 4539962 1087569..1089080 1 NC_008593.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar cap protein fliD 1089080 4539962 NT01CX_1879 Clostridium novyi NT flagellar cap protein fliD YP_877952.1 1087569 D 386415 CDS YP_877953.1 118443082 4541801 1089084..1089422 1 NC_008593.1 hypothetical protein 1089422 4541801 NT01CX_1880 Clostridium novyi NT hypothetical protein YP_877953.1 1089084 D 386415 CDS YP_877954.1 118443608 4539984 1089532..1090344 1 NC_008593.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein FliA(A) 1090344 fliC 4539984 fliC Clostridium novyi NT flagellin protein FliA(A) YP_877954.1 1089532 D 386415 CDS YP_877955.1 118443152 4541703 1090565..1091377 1 NC_008593.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein FliB(A) 1091377 fliC 4541703 fliC Clostridium novyi NT flagellin protein FliB(A) YP_877955.1 1090565 D 386415 CDS YP_877956.1 118444586 4540127 1091489..1093228 1 NC_008593.1 identified by match to protein family HMM PF01973; hypothetical protein 1093228 4540127 NT01CX_1883 Clostridium novyi NT hypothetical protein YP_877956.1 1091489 D 386415 CDS YP_877957.1 118444243 4541536 1093231..1094457 1 NC_008593.1 identified by match to protein family HMM PF01973; hypothetical protein 1094457 4541536 NT01CX_1884 Clostridium novyi NT hypothetical protein YP_877957.1 1093231 D 386415 CDS YP_877958.1 118444652 4539785 1094582..1094932 1 NC_008593.1 hypothetical protein 1094932 4539785 NT01CX_1885 Clostridium novyi NT hypothetical protein YP_877958.1 1094582 D 386415 CDS YP_877959.1 118444256 4541635 1094948..1095979 1 NC_008593.1 identified by match to protein family HMM PF02719; UDP-N-acetylglucosamine 4,6-dehydratase 1095979 4541635 NT01CX_1886 Clostridium novyi NT UDP-N-acetylglucosamine 4,6-dehydratase YP_877959.1 1094948 D 386415 CDS YP_877960.1 118443326 4540627 1096013..1097149 1 NC_008593.1 LPS biosynthesis protein WbpG 1097149 4540627 NT01CX_1887 Clostridium novyi NT LPS biosynthesis protein WbpG YP_877960.1 1096013 D 386415 CDS YP_877961.1 118442947 4539617 1097133..1097897 1 NC_008593.1 identified by match to protein family HMM PF02348; spore coat polysaccharide biosynthesis protein spsF 1097897 spsF 4539617 spsF Clostridium novyi NT spore coat polysaccharide biosynthesis protein spsF YP_877961.1 1097133 D 386415 CDS YP_877962.1 118444428 4540137 1097922..1098386 1 NC_008593.1 hypothetical protein 1098386 4540137 NT01CX_1889 Clostridium novyi NT hypothetical protein YP_877962.1 1097922 D 386415 CDS YP_877963.1 118444536 4540165 1098507..1099466 1 NC_008593.1 glycosyltransferase 1099466 4540165 NT01CX_1890 Clostridium novyi NT glycosyltransferase YP_877963.1 1098507 D 386415 CDS YP_877964.1 118443479 4540190 1099497..1100549 1 NC_008593.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 1100549 4540190 NT01CX_1891 Clostridium novyi NT sialic acid synthase YP_877964.1 1099497 D 386415 CDS YP_877965.1 118443902 4541491 1100581..1101588 1 NC_008593.1 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein 1101588 4541491 NT01CX_1892 Clostridium novyi NT NAD-dependent epimerase/dehydratase family protein YP_877965.1 1100581 D 386415 CDS YP_877966.1 118443432 4541953 1101607..1102305 1 NC_008593.1 identified by match to protein family HMM PF00483; licC protein 1102305 4541953 NT01CX_1893 Clostridium novyi NT licC protein YP_877966.1 1101607 D 386415 CDS YP_877967.1 118444020 4540653 1102390..1103280 1 NC_008593.1 choline kinase 1103280 4540653 NT01CX_1894 Clostridium novyi NT choline kinase YP_877967.1 1102390 D 386415 CDS YP_877968.1 118444718 4541517 1103293..1105305 1 NC_008593.1 identified by match to protein family HMM PF00884; sulfatase 1105305 4541517 NT01CX_1895 Clostridium novyi NT sulfatase YP_877968.1 1103293 D 386415 CDS YP_877969.1 118442958 4539726 1105318..1106262 1 NC_008593.1 identified by match to protein family HMM PF00892; licB protein 1106262 4539726 NT01CX_1896 Clostridium novyi NT licB protein YP_877969.1 1105318 D 386415 CDS YP_877970.1 118443562 4539886 1106441..1107247 1 NC_008593.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 1107247 4539886 NT01CX_1897 Clostridium novyi NT flagellin YP_877970.1 1106441 D 386415 CDS YP_877971.1 118444228 4539699 1107278..1108111 1 NC_008593.1 identified by match to protein family HMM PF00700; flagellin 1108111 4539699 NT01CX_1898 Clostridium novyi NT flagellin YP_877971.1 1107278 D 386415 CDS YP_877972.1 118444004 4540637 1108434..1108838 1 NC_008593.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1108838 flgB 4540637 flgB Clostridium novyi NT flagellar basal body rod protein FlgB YP_877972.1 1108434 D 386415 CDS YP_877973.1 118444436 4540143 1108841..1109278 1 NC_008593.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1109278 flgC 4540143 flgC Clostridium novyi NT flagellar basal body rod protein FlgC YP_877973.1 1108841 D 386415 CDS YP_877974.1 118443323 4540625 1109341..1109652 1 NC_008593.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1109652 fliE 4540625 fliE Clostridium novyi NT flagellar hook-basal body protein FliE YP_877974.1 1109341 D 386415 CDS YP_877975.1 118444659 4539792 1109668..1111239 1 NC_008593.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1111239 fliF 4539792 fliF Clostridium novyi NT flagellar MS-ring protein YP_877975.1 1109668 D 386415 CDS YP_877976.1 118444235 4541528 1111245..1112258 1 NC_008593.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1112258 fliG 4541528 fliG Clostridium novyi NT flagellar motor switch protein G YP_877976.1 1111245 D 386415 CDS YP_877977.1 118443331 4539845 1112242..1113039 1 NC_008593.1 fliH protein 1113039 4539845 NT01CX_1904 Clostridium novyi NT fliH protein YP_877977.1 1112242 D 386415 CDS YP_877978.1 118442915 4540918 1113073..1114389 1 NC_008593.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; flagellum-specific ATP synthase 1114389 4540918 NT01CX_1905 Clostridium novyi NT flagellum-specific ATP synthase YP_877978.1 1113073 D 386415 CDS YP_877979.1 118444406 4541208 1114410..1114844 1 NC_008593.1 flagellar protein fliJ 1114844 4541208 NT01CX_1906 Clostridium novyi NT flagellar protein fliJ YP_877979.1 1114410 D 386415 CDS YP_877980.1 118443977 4540368 1114865..1116217 1 NC_008593.1 identified by match to protein family HMM PF02120; flagellar hook-length control protein 1116217 4540368 NT01CX_1907 Clostridium novyi NT flagellar hook-length control protein YP_877980.1 1114865 D 386415 CDS YP_877981.1 118443090 4541808 1116229..1117053 1 NC_008593.1 identified by match to protein family HMM PF03963; flagellar hook assembly protein FlgD 1117053 flgD 4541808 flgD Clostridium novyi NT flagellar hook assembly protein FlgD YP_877981.1 1116229 D 386415 CDS YP_877982.1 118444675 4539674 1117072..1117473 1 NC_008593.1 hypothetical protein 1117473 4539674 NT01CX_1909 Clostridium novyi NT hypothetical protein YP_877982.1 1117072 D 386415 CDS YP_877983.1 118444200 4541329 1117542..1118999 1 NC_008593.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein FlgG 1118999 flgE 4541329 flgE Clostridium novyi NT flagellar basal-body rod protein FlgG YP_877983.1 1117542 D 386415 CDS YP_877984.1 118443855 4540868 1119160..1119351 1 NC_008593.1 identified by match to protein family HMM PF06289; flagellar protein flbD -like protein 1119351 4540868 NT01CX_1911 Clostridium novyi NT flagellar protein flbD -like protein YP_877984.1 1119160 D 386415 CDS YP_877985.1 118443368 4541842 1119365..1120174 1 NC_008593.1 identified by match to protein family HMM PF01618; chemotaxis motA protein 1120174 motA 4541842 motA Clostridium novyi NT chemotaxis motA protein YP_877985.1 1119365 D 386415 CDS YP_877986.1 118443271 4541063 1120167..1120892 1 NC_008593.1 identified by match to protein family HMM PF00691; chemotaxis motB protein 1120892 4541063 NT01CX_1913 Clostridium novyi NT chemotaxis motB protein YP_877986.1 1120167 D 386415 CDS YP_877987.1 118443258 4540343 1120894..1121382 1 NC_008593.1 identified by match to protein family HMM PF03748; flagellar protein FliL 1121382 4540343 NT01CX_1914 Clostridium novyi NT flagellar protein FliL YP_877987.1 1120894 D 386415 CDS YP_877988.1 118443817 4540817 1121394..1121750 1 NC_008593.1 flagellar biosynthesis protein FliZ 1121750 4540817 NT01CX_1915 Clostridium novyi NT flagellar biosynthesis protein FliZ YP_877988.1 1121394 D 386415 CDS YP_877989.1 118443404 4541715 1121747..1122520 1 NC_008593.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1122520 fliP 4541715 fliP Clostridium novyi NT flagellar biosynthesis protein FliP YP_877989.1 1121747 D 386415 CDS YP_877990.1 118443073 4541794 1122531..1122800 1 NC_008593.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 1122800 fliQ 4541794 fliQ Clostridium novyi NT flagellar biosynthetic protein FliQ YP_877990.1 1122531 D 386415 CDS YP_877991.2 162139705 4539661 1122813..1124645 1 NC_008593.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB 1124645 4539661 NT01CX_1918 Clostridium novyi NT bifunctional flagellar biosynthesis protein FliR/FlhB YP_877991.2 1122813 D 386415 CDS YP_877992.1 118444564 4540402 1124649..1126730 1 NC_008593.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1126730 flhA 4540402 flhA Clostridium novyi NT flagellar biosynthesis protein FlhA YP_877992.1 1124649 D 386415 CDS YP_877993.1 118444135 4540984 1126727..1127962 1 NC_008593.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1127962 flhF 4540984 flhF Clostridium novyi NT flagellar biosynthesis regulator FlhF YP_877993.1 1126727 D 386415 CDS YP_877994.1 118444001 4540635 1127956..1128837 1 NC_008593.1 similar to YLXH B. subtilis; identified by match to protein family HMM PF01656; MinD family ATPase 1128837 4540635 NT01CX_1921 Clostridium novyi NT MinD family ATPase YP_877994.1 1127956 D 386415 CDS YP_877995.1 118443395 4541294 1128850..1129509 1 NC_008593.1 flagellar protein 1129509 4541294 NT01CX_1922 Clostridium novyi NT flagellar protein YP_877995.1 1128850 D 386415 CDS YP_877996.1 118443948 4540284 1129512..1130240 1 NC_008593.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor for flagellar operon fliA 1130240 4540284 NT01CX_1923 Clostridium novyi NT RNA polymerase sigma factor for flagellar operon fliA YP_877996.1 1129512 D 386415 CDS YP_877997.1 118443192 4541480 1130254..1130730 1 NC_008593.1 hypothetical protein 1130730 4541480 NT01CX_1924 Clostridium novyi NT hypothetical protein YP_877997.1 1130254 D 386415 CDS YP_877998.1 118443612 4539987 1130748..1130954 1 NC_008593.1 hypothetical protein 1130954 4539987 NT01CX_1925 Clostridium novyi NT hypothetical protein YP_877998.1 1130748 D 386415 CDS YP_877999.1 118443708 4540245 1130951..1131751 1 NC_008593.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 1131751 flgG 4540245 flgG Clostridium novyi NT flagellar basal body rod protein FlgG YP_877999.1 1130951 D 386415 CDS YP_878000.1 118444095 4540030 1131780..1132556 1 NC_008593.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 1132556 flgG 4540030 flgG Clostridium novyi NT flagellar basal body rod protein FlgG YP_878000.1 1131780 D 386415 CDS YP_878001.1 118444384 4541246 complement(1132660..1134306) 1 NC_008593.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1134306 4541246 NT01CX_1928 Clostridium novyi NT manganese-dependent inorganic pyrophosphatase YP_878001.1 1132660 R 386415 CDS YP_878002.1 118442891 4541974 1134488..1137031 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 1137031 4541974 NT01CX_1929 Clostridium novyi NT ATPase P YP_878002.1 1134488 D 386415 CDS YP_878003.1 118443017 4540591 complement(1137117..1138541) 1 NC_008593.1 ISBma2, transposase 1138541 4540591 NT01CX_1930 Clostridium novyi NT ISBma2, transposase YP_878003.1 1137117 R 386415 CDS YP_878004.1 118443939 4540276 complement(1138702..1139112) 1 NC_008593.1 hypothetical protein 1139112 4540276 NT01CX_1931 Clostridium novyi NT hypothetical protein YP_878004.1 1138702 R 386415 CDS YP_878005.1 118443651 4539765 1139324..1141606 1 NC_008593.1 identified by match to protein family HMM PF05362; ATP-dependent protease La 1141606 4539765 NT01CX_1932 Clostridium novyi NT ATP-dependent protease La YP_878005.1 1139324 D 386415 CDS YP_878006.1 118443130 4541743 complement(1141659..1142756) 1 NC_008593.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1142756 ychF 4541743 ychF Clostridium novyi NT GTP-dependent nucleic acid-binding protein EngD YP_878006.1 1141659 R 386415 CDS YP_878007.1 118444716 4541515 1143042..1143971 1 NC_008593.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1143971 mraW 4541515 mraW Clostridium novyi NT S-adenosyl-methyltransferase MraW YP_878007.1 1143042 D 386415 CDS YP_878008.1 118444434 4540141 1143999..1144499 1 NC_008593.1 hypothetical protein 1144499 4540141 NT01CX_1935 Clostridium novyi NT hypothetical protein YP_878008.1 1143999 D 386415 CDS YP_878009.1 118443755 4541380 1144515..1146719 1 NC_008593.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 1146719 4541380 NT01CX_1936 Clostridium novyi NT stage V sporulation protein D YP_878009.1 1144515 D 386415 CDS YP_878010.1 118443333 4539847 1146784..1148235 1 NC_008593.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1148235 murE 4539847 murE Clostridium novyi NT UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_878010.1 1146784 D 386415 CDS YP_878011.1 118443059 4541782 1148236..1149609 1 NC_008593.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1149609 4541782 NT01CX_1938 Clostridium novyi NT UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_878011.1 1148236 D 386415 CDS YP_878012.1 118444153 4541236 1149623..1150600 1 NC_008593.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1150600 mraY 4541236 mraY Clostridium novyi NT phospho-N-acetylmuramoyl-pentapeptide- transferase YP_878012.1 1149623 D 386415 CDS YP_878013.1 118443951 4540745 1150625..1151734 1 NC_008593.1 identified by match to protein family HMM PF01098; stage V sporulation protein E 1151734 4540745 NT01CX_1940 Clostridium novyi NT stage V sporulation protein E YP_878013.1 1150625 D 386415 CDS YP_878014.1 118443952 4540746 1151879..1152664 1 NC_008593.1 identified by match to protein family HMM PF03799; cell division septal protein divIB/FtsQ 1152664 4540746 NT01CX_1941 Clostridium novyi NT cell division septal protein divIB/FtsQ YP_878014.1 1151879 D 386415 CDS YP_878015.1 118443873 4541687 1152676..1153434 1 NC_008593.1 identified by match to protein family HMM PF05949; division initiation protein 1153434 4541687 NT01CX_1942 Clostridium novyi NT division initiation protein YP_878015.1 1152676 D 386415 CDS YP_878016.1 118444279 4539702 1153445..1153786 1 NC_008593.1 identified by match to protein family HMM PF06947; small basic protein 1153786 4539702 NT01CX_1943 Clostridium novyi NT small basic protein YP_878016.1 1153445 D 386415 CDS YP_878017.1 118443084 4541803 1153796..1154542 1 NC_008593.1 identified by match to protein family HMM PF05949; division initiation protein 1154542 4541803 NT01CX_1944 Clostridium novyi NT division initiation protein YP_878017.1 1153796 D 386415 CDS YP_878018.1 118443487 4540198 1154584..1155255 1 NC_008593.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1155255 4540198 NT01CX_1945 Clostridium novyi NT hypothetical protein YP_878018.1 1154584 D 386415 CDS YP_878019.1 118444480 4539959 1155258..1155719 1 NC_008593.1 identified by match to protein family HMM PF04472; hypothetical protein 1155719 4539959 NT01CX_1946 Clostridium novyi NT hypothetical protein YP_878019.1 1155258 D 386415 CDS YP_878020.1 118443110 4541767 1155745..1156530 1 NC_008593.1 identified by match to protein family HMM PF01479; YlmH protein 1156530 4541767 NT01CX_1947 Clostridium novyi NT YlmH protein YP_878020.1 1155745 D 386415 CDS YP_878021.1 118443678 4541006 1156547..1157251 1 NC_008593.1 identified by match to protein family HMM PF05103; cell division protein DivIVA 1157251 4541006 NT01CX_1948 Clostridium novyi NT cell division protein DivIVA YP_878021.1 1156547 D 386415 CDS YP_878022.1 118444198 4541327 1157387..1158079 1 NC_008593.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1158079 4541327 NT01CX_1949 Clostridium novyi NT 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_878022.1 1157387 D 386415 CDS YP_878023.1 118444078 4539937 1158173..1158793 1 NC_008593.1 similar to YTEA B. subtilis; general stress protein, DnaK suppressor DskA 1158793 4539937 NT01CX_1950 Clostridium novyi NT general stress protein, DnaK suppressor DskA YP_878023.1 1158173 D 386415 CDS YP_878024.1 118444609 4540107 1158833..1159279 1 NC_008593.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1159279 lspA 4540107 lspA Clostridium novyi NT lipoprotein signal peptidase YP_878024.1 1158833 D 386415 CDS YP_878025.1 118443119 4541734 1159279..1160193 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1160193 4541734 NT01CX_1952 Clostridium novyi NT ribosomal large subunit pseudouridine synthase D YP_878025.1 1159279 D 386415 CDS YP_878026.1 118443536 4541935 1160196..1160732 1 NC_008593.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1160732 4541935 NT01CX_1953 Clostridium novyi NT bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_878026.1 1160196 D 386415 CDS YP_878027.1 118443963 4540755 complement(1160799..1162532) 1 NC_008593.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 1162532 4540755 NT01CX_1954 Clostridium novyi NT fibronectin-binding protein YP_878027.1 1160799 R 386415 CDS YP_878028.1 118444379 4541243 1162638..1163462 1 NC_008593.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1163462 dapF 4541243 dapF Clostridium novyi NT diaminopimelate epimerase YP_878028.1 1162638 D 386415 CDS YP_878029.1 118442917 4540920 1163582..1165129 1 NC_008593.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1165129 4540920 NT01CX_1956 Clostridium novyi NT general secretion pathway protein E YP_878029.1 1163582 D 386415 CDS YP_878030.1 118444210 4539685 1165116..1166306 1 NC_008593.1 identified by match to protein family HMM PF00482; pilin biogenesis protein 1166306 4539685 NT01CX_1957 Clostridium novyi NT pilin biogenesis protein YP_878030.1 1165116 D 386415 CDS YP_878031.1 118443265 4541059 1166328..1166843 1 NC_008593.1 hypothetical protein 1166843 4541059 NT01CX_1958 Clostridium novyi NT hypothetical protein YP_878031.1 1166328 D 386415 CDS YP_878032.1 118444540 4540384 1166824..1167324 1 NC_008593.1 prepilin peptidase 1167324 4540384 NT01CX_1959 Clostridium novyi NT prepilin peptidase YP_878032.1 1166824 D 386415 CDS YP_878033.1 118444086 4539944 1167325..1167801 1 NC_008593.1 hypothetical protein 1167801 4539944 NT01CX_1960 Clostridium novyi NT hypothetical protein YP_878033.1 1167325 D 386415 CDS YP_878034.1 118443174 4540315 1167803..1168270 1 NC_008593.1 hypothetical protein 1168270 4540315 NT01CX_1961 Clostridium novyi NT hypothetical protein YP_878034.1 1167803 D 386415 CDS YP_878035.1 118443566 4539890 1168234..1168674 1 NC_008593.1 hypothetical protein 1168674 4539890 NT01CX_1962 Clostridium novyi NT hypothetical protein YP_878035.1 1168234 D 386415 CDS YP_878036.1 118443145 4541697 1168734..1169426 1 NC_008593.1 hypothetical protein 1169426 4541697 NT01CX_1963 Clostridium novyi NT hypothetical protein YP_878036.1 1168734 D 386415 CDS YP_878037.1 118444669 4539668 1169430..1169906 1 NC_008593.1 hypothetical protein 1169906 4539668 NT01CX_1964 Clostridium novyi NT hypothetical protein YP_878037.1 1169430 D 386415 CDS YP_878038.1 118444245 4541538 1169899..1170315 1 NC_008593.1 hypothetical protein 1170315 4541538 NT01CX_1965 Clostridium novyi NT hypothetical protein YP_878038.1 1169899 D 386415 CDS YP_878039.1 118443345 4539858 1170516..1171073 1 NC_008593.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1171073 4539858 NT01CX_1966 Clostridium novyi NT elongation factor P YP_878039.1 1170516 D 386415 CDS YP_878040.1 118442960 4539728 1171097..1171468 1 NC_008593.1 hypothetical protein 1171468 4539728 NT01CX_1967 Clostridium novyi NT hypothetical protein YP_878040.1 1171097 D 386415 CDS YP_878041.1 118443137 4541749 complement(1171572..1173011) 1 NC_008593.1 ISBma2, transposase 1173011 4541749 NT01CX_1968 Clostridium novyi NT ISBma2, transposase YP_878041.1 1171572 R 386415 CDS YP_878042.1 118444024 4540656 1173281..1174177 1 NC_008593.1 stage III sporulation protein AA 1174177 4540656 NT01CX_1969 Clostridium novyi NT stage III sporulation protein AA YP_878042.1 1173281 D 386415 CDS YP_878043.1 118443276 4541067 1174179..1174700 1 NC_008593.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 1174700 4541067 NT01CX_1970 Clostridium novyi NT stage III sporulation protein SpoAB YP_878043.1 1174179 D 386415 CDS YP_878044.1 118443691 4540231 1174711..1174908 1 NC_008593.1 identified by match to protein family HMM PF06686; stage III sporulation protein AC, SpoIIIAC -like protein 1174908 4540231 NT01CX_1971 Clostridium novyi NT stage III sporulation protein AC, SpoIIIAC -like protein YP_878044.1 1174711 D 386415 CDS YP_878045.1 118444355 4540443 1174918..1175301 1 NC_008593.1 stage III sporulation protein AD 1175301 4540443 NT01CX_1972 Clostridium novyi NT stage III sporulation protein AD YP_878045.1 1174918 D 386415 CDS YP_878046.1 118442875 4541998 1175325..1176488 1 NC_008593.1 stage III sporulation protein AE 1176488 4541998 NT01CX_1973 Clostridium novyi NT stage III sporulation protein AE YP_878046.1 1175325 D 386415 CDS YP_878047.1 118443078 4541799 1176499..1177083 1 NC_008593.1 stage III sporulation protein AF 1177083 4541799 NT01CX_1974 Clostridium novyi NT stage III sporulation protein AF YP_878047.1 1176499 D 386415 CDS YP_878048.1 118443500 4541811 1177115..1177747 1 NC_008593.1 stage III sporulation protein AG 1177747 4541811 NT01CX_1975 Clostridium novyi NT stage III sporulation protein AG YP_878048.1 1177115 D 386415 CDS YP_878049.1 118444091 4539949 1177813..1178325 1 NC_008593.1 stage III sporulation protein AH 1178325 4539949 NT01CX_1976 Clostridium novyi NT stage III sporulation protein AH YP_878049.1 1177813 D 386415 CDS YP_878050.1 118444514 4539930 1178409..1178813 1 NC_008593.1 identified by match to protein family HMM PF03780; alkaline shock protein 1178813 4539930 NT01CX_1977 Clostridium novyi NT alkaline shock protein YP_878050.1 1178409 D 386415 CDS YP_878051.1 118443864 4541680 1178923..1179324 1 NC_008593.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1179324 nusB 4541680 nusB Clostridium novyi NT transcription antitermination protein NusB YP_878051.1 1178923 D 386415 CDS YP_878052.1 118444496 4539915 1179350..1180186 1 NC_008593.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1180186 4539915 NT01CX_1979 Clostridium novyi NT bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_878052.1 1179350 D 386415 CDS YP_878053.1 118442873 4541996 1180188..1181390 1 NC_008593.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1181390 xseA 4541996 xseA Clostridium novyi NT exodeoxyribonuclease VII large subunit YP_878053.1 1180188 D 386415 CDS YP_878054.1 118443654 4539768 1181414..1181635 1 NC_008593.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1181635 xseB 4539768 xseB Clostridium novyi NT exodeoxyribonuclease VII small subunit YP_878054.1 1181414 D 386415 CDS YP_878055.1 118443490 4540201 1181635..1182504 1 NC_008593.1 identified by match to protein family HMM PF00348; geranyltranstransferase 1182504 4540201 NT01CX_1982 Clostridium novyi NT geranyltranstransferase YP_878055.1 1181635 D 386415 CDS YP_878056.1 118444521 4540153 1182638..1184509 1 NC_008593.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1184509 4540153 NT01CX_1983 Clostridium novyi NT 1-deoxy-D-xylulose-5-phosphate synthase YP_878056.1 1182638 D 386415 CDS YP_878057.1 118444316 4540800 1184542..1185354 1 NC_008593.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1185354 4540800 NT01CX_1984 Clostridium novyi NT hemolysin A YP_878057.1 1184542 D 386415 CDS YP_878058.1 118442965 4539732 1185366..1186187 1 NC_008593.1 identified by match to protein family HMM PF01513; ATP-NAD kinase 1186187 4539732 NT01CX_1985 Clostridium novyi NT ATP-NAD kinase YP_878058.1 1185366 D 386415 CDS YP_878059.1 118444192 4541322 1186207..1186662 1 NC_008593.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1186662 argR 4541322 argR Clostridium novyi NT arginine repressor YP_878059.1 1186207 D 386415 CDS YP_878060.1 118444709 4541510 1186673..1188367 1 NC_008593.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 1188367 recN 4541510 recN Clostridium novyi NT DNA repair protein RecN YP_878060.1 1186673 D 386415 CDS YP_878061.1 118443102 4541760 1188552..1189769 1 NC_008593.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; stage IV sporulation protein B 1189769 4541760 NT01CX_1988 Clostridium novyi NT stage IV sporulation protein B YP_878061.1 1188552 D 386415 CDS YP_878062.1 118443661 4539773 1189949..1190761 1 NC_008593.1 identified by match to protein family HMM PF00072; stage 0 sporulation protein A 1190761 4539773 NT01CX_1989 Clostridium novyi NT stage 0 sporulation protein A YP_878062.1 1189949 D 386415 CDS YP_878063.1 118443448 4541888 1191029..1191328 1 NC_008593.1 hypothetical protein 1191328 4541888 NT01CX_1990 Clostridium novyi NT hypothetical protein YP_878063.1 1191029 D 386415 CDS YP_878064.1 118443418 4541729 1191479..1191811 1 NC_008593.1 Rhs family protein 1191811 4541729 NT01CX_1991 Clostridium novyi NT Rhs family protein YP_878064.1 1191479 D 386415 CDS YP_878065.1 118442899 4541981 1192015..1192236 1 NC_008593.1 hypothetical protein 1192236 4541981 NT01CX_1992 Clostridium novyi NT hypothetical protein YP_878065.1 1192015 D 386415 CDS YP_878066.1 118443233 4540327 complement(1192324..1192974) 1 NC_008593.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 1192974 4540327 NT01CX_1993 Clostridium novyi NT superoxide dismutase YP_878066.1 1192324 R 386415 CDS YP_878067.1 118444109 4540044 1193186..1194592 1 NC_008593.1 amino acid permease 1194592 4540044 NT01CX_1994 Clostridium novyi NT amino acid permease YP_878067.1 1193186 D 386415 CDS YP_878068.1 118443571 4541869 complement(1194754..1196421) 1 NC_008593.1 hypothetical protein 1196421 4541869 NT01CX_1995 Clostridium novyi NT hypothetical protein YP_878068.1 1194754 R 386415 CDS YP_878069.1 118444413 4541214 complement(1196422..1197207) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1197207 4541214 NT01CX_1996 Clostridium novyi NT ABC transporter ATP-binding protein YP_878069.1 1196422 R 386415 CDS YP_878070.1 118442975 4541074 1197382..1197774 1 NC_008593.1 hypothetical protein 1197774 4541074 NT01CX_1997 Clostridium novyi NT hypothetical protein YP_878070.1 1197382 D 386415 CDS YP_878071.1 118443472 4541906 complement(1197426..1197869) 1 NC_008593.1 hypothetical protein 1197869 4541906 NT01CX_1998 Clostridium novyi NT hypothetical protein YP_878071.1 1197426 R 386415 CDS YP_878072.1 118444327 4540810 1198661..1199437 1 NC_008593.1 SAM-dependent methyltransferase 1199437 4540810 NT01CX_1999 Clostridium novyi NT SAM-dependent methyltransferase YP_878072.1 1198661 D 386415 CDS YP_878073.1 118443717 4540504 1200045..1200572 1 NC_008593.1 hypothetical protein 1200572 4540504 NT01CX_2000 Clostridium novyi NT hypothetical protein YP_878073.1 1200045 D 386415 CDS YP_878074.1 118443322 4540624 1200599..1200700 1 NC_008593.1 hypothetical protein 1200700 4540624 NT01CX_2001 Clostridium novyi NT hypothetical protein YP_878074.1 1200599 D 386415 CDS YP_878075.1 118443683 4541010 1200752..1200901 1 NC_008593.1 hypothetical protein 1200901 4541010 NT01CX_2002 Clostridium novyi NT hypothetical protein YP_878075.1 1200752 D 386415 CDS YP_878076.1 118443274 4541065 1201103..1201285 1 NC_008593.1 hypothetical protein 1201285 4541065 NT01CX_2003 Clostridium novyi NT hypothetical protein YP_878076.1 1201103 D 386415 CDS YP_878077.1 118444565 4540403 1201344..1202021 1 NC_008593.1 hypothetical protein 1202021 4540403 NT01CX_2004 Clostridium novyi NT hypothetical protein YP_878077.1 1201344 D 386415 CDS YP_878078.1 118444094 4539951 1202252..1202815 1 NC_008593.1 hypothetical protein 1202815 4539951 NT01CX_2005 Clostridium novyi NT hypothetical protein YP_878078.1 1202252 D 386415 CDS YP_878079.1 118443928 4540266 1202963..1203532 1 NC_008593.1 hypothetical protein 1203532 4540266 NT01CX_2006 Clostridium novyi NT hypothetical protein YP_878079.1 1202963 D 386415 CDS YP_878080.1 118443508 4541818 1203617..1203817 1 NC_008593.1 hypothetical protein 1203817 4541818 NT01CX_2007 Clostridium novyi NT hypothetical protein YP_878080.1 1203617 D 386415 CDS YP_878081.1 118443026 4539645 1204007..1204531 1 NC_008593.1 hypothetical protein 1204531 4539645 NT01CX_2008 Clostridium novyi NT hypothetical protein YP_878081.1 1204007 D 386415 CDS YP_878082.1 118444377 4541241 1204621..1205064 1 NC_008593.1 hypothetical protein 1205064 4541241 NT01CX_2009 Clostridium novyi NT hypothetical protein YP_878082.1 1204621 D 386415 CDS YP_878083.1 118444165 4540832 1205117..1205608 1 NC_008593.1 identified by match to protein family HMM PF00583; acetyltransferase 1205608 4540832 NT01CX_2010 Clostridium novyi NT acetyltransferase YP_878083.1 1205117 D 386415 CDS YP_878084.1 118443735 4541364 1205628..1208522 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 1208522 4541364 NT01CX_2011 Clostridium novyi NT helicase YP_878084.1 1205628 D 386415 CDS YP_878085.1 118442977 4541075 complement(1208615..1209325) 1 NC_008593.1 hypothetical protein 1209325 4541075 NT01CX_2012 Clostridium novyi NT hypothetical protein YP_878085.1 1208615 R 386415 CDS YP_878086.1 118444475 4539955 complement(1209285..1210169) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1210169 4539955 NT01CX_2013 Clostridium novyi NT ABC transporter ATP-binding protein YP_878086.1 1209285 R 386415 CDS YP_878087.1 118444476 4539956 complement(1210187..1211731) 1 NC_008593.1 hypothetical protein 1211731 4539956 NT01CX_2014 Clostridium novyi NT hypothetical protein YP_878087.1 1210187 R 386415 CDS YP_878088.1 118443916 4541502 1212025..1213464 1 NC_008593.1 ISBma2, transposase 1213464 4541502 NT01CX_2015 Clostridium novyi NT ISBma2, transposase YP_878088.1 1212025 D 386415 CDS YP_878089.1 118443159 4541709 complement(1213528..1213926) 1 NC_008593.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1213926 4541709 NT01CX_2016 Clostridium novyi NT MutT/nudix family protein YP_878089.1 1213528 R 386415 CDS YP_878090.1 118444559 4540398 complement(1214225..1214362) 1 NC_008593.1 hypothetical protein 1214362 4540398 NT01CX_2017 Clostridium novyi NT hypothetical protein YP_878090.1 1214225 R 386415 CDS YP_878091.1 118443766 4541041 complement(1214381..1214572) 1 NC_008593.1 hypothetical protein 1214572 4541041 NT01CX_2018 Clostridium novyi NT hypothetical protein YP_878091.1 1214381 R 386415 CDS YP_878092.1 118442898 4541980 complement(1214697..1214939) 1 NC_008593.1 hypothetical protein 1214939 4541980 NT01CX_2019 Clostridium novyi NT hypothetical protein YP_878092.1 1214697 R 386415 CDS YP_878093.1 118444696 4540216 complement(1215267..1215593) 1 NC_008593.1 hypothetical protein 1215593 4540216 NT01CX_2020 Clostridium novyi NT hypothetical protein YP_878093.1 1215267 R 386415 CDS YP_878094.1 118444141 4541225 1215989..1216882 1 NC_008593.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV protein 1216882 4541225 NT01CX_2021 Clostridium novyi NT degV protein YP_878094.1 1215989 D 386415 CDS YP_878095.1 118443618 4541850 1217052..1217408 1 NC_008593.1 hypothetical protein 1217408 4541850 NT01CX_2022 Clostridium novyi NT hypothetical protein YP_878095.1 1217052 D 386415 CDS YP_878096.1 118443086 4541805 1217571..1218089 1 NC_008593.1 identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1218089 4541805 NT01CX_2023 Clostridium novyi NT MutT/NUDIX NTP pyrophosphatase YP_878096.1 1217571 D 386415 CDS YP_878097.1 118444690 4540211 1218171..1218824 1 NC_008593.1 sporulation factor spoIIM 1218824 4540211 NT01CX_2024 Clostridium novyi NT sporulation factor spoIIM YP_878097.1 1218171 D 386415 CDS YP_878098.1 118444203 4541332 1219087..1219965 1 NC_008593.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 1219965 xerD 4541332 xerD Clostridium novyi NT tyrosine recombinase XerD YP_878098.1 1219087 D 386415 CDS YP_878099.1 118443387 4541287 1220078..1221256 1 NC_008593.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1221256 4541287 NT01CX_2026 Clostridium novyi NT D-alanyl-D-alanine carboxypeptidase YP_878099.1 1220078 D 386415 CDS YP_878100.1 118442883 4541966 complement(1221328..1222992) 1 NC_008593.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1222992 ilvD 4541966 ilvD Clostridium novyi NT dihydroxy-acid dehydratase YP_878100.1 1221328 R 386415 CDS YP_878101.1 118444459 4540058 1223640..1224635 1 NC_008593.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1224635 ilvC 4540058 ilvC Clostridium novyi NT ketol-acid reductoisomerase YP_878101.1 1223640 D 386415 CDS YP_878102.1 118443946 4540282 1224673..1226373 1 NC_008593.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 1226373 ilvB 4540282 ilvB Clostridium novyi NT acetolactate synthase large subunit YP_878102.1 1224673 D 386415 CDS YP_878103.1 118444630 4539595 1226393..1227307 1 NC_008593.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122; branched-chain amino acid aminotransferase 1227307 ilvE 4539595 ilvE Clostridium novyi NT branched-chain amino acid aminotransferase YP_878103.1 1226393 D 386415 CDS YP_878104.1 118443195 4541483 1227407..1228591 1 NC_008593.1 identified by match to protein family HMM PF01743; polyA polymerase family protein 1228591 4541483 NT01CX_2031 Clostridium novyi NT polyA polymerase family protein YP_878104.1 1227407 D 386415 CDS YP_878105.1 118442854 4542004 1228569..1229321 1 NC_008593.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 1229321 scpA 4542004 scpA Clostridium novyi NT segregation and condensation protein A YP_878105.1 1228569 D 386415 CDS YP_878106.1 118443352 4539863 1229308..1229880 1 NC_008593.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 1229880 scpB 4539863 scpB Clostridium novyi NT segregation and condensation protein B YP_878106.1 1229308 D 386415 CDS YP_878107.1 118444033 4540662 complement(1229885..1230289) 1 NC_008593.1 hypothetical protein 1230289 4540662 NT01CX_2034 Clostridium novyi NT hypothetical protein YP_878107.1 1229885 R 386415 CDS YP_878108.1 118444425 4540134 complement(1230291..1230824) 1 NC_008593.1 hypothetical protein 1230824 4540134 NT01CX_2035 Clostridium novyi NT hypothetical protein YP_878108.1 1230291 R 386415 CDS YP_878109.1 118443151 4541702 1231037..1232164 1 NC_008593.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1232164 4541702 NT01CX_2036 Clostridium novyi NT D-alanyl-D-alanine carboxypeptidase YP_878109.1 1231037 D 386415 CDS YP_878110.1 118443573 4541871 1232296..1232505 1 NC_008593.1 hypothetical protein 1232505 4541871 NT01CX_2037 Clostridium novyi NT hypothetical protein YP_878110.1 1232296 D 386415 CDS YP_878111.1 118443247 4540335 complement(1232591..1234030) 1 NC_008593.1 ISBma2, transposase 1234030 4540335 NT01CX_2038 Clostridium novyi NT ISBma2, transposase YP_878111.1 1232591 R 386415 CDS YP_878112.1 118443564 4539888 1234306..1235274 1 NC_008593.1 identified by match to protein family HMM PF00480; glucokinase 1235274 4539888 NT01CX_2039 Clostridium novyi NT glucokinase YP_878112.1 1234306 D 386415 CDS YP_878113.1 118444411 4541212 complement(1235355..1235630) 1 NC_008593.1 hypothetical protein 1235630 4541212 NT01CX_2040 Clostridium novyi NT hypothetical protein YP_878113.1 1235355 R 386415 CDS YP_878114.1 118443829 4540826 1235904..1236890 1 NC_008593.1 hypothetical protein 1236890 4540826 NT01CX_2041 Clostridium novyi NT hypothetical protein YP_878114.1 1235904 D 386415 CDS YP_878115.1 118442870 4541993 1236887..1238164 1 NC_008593.1 identified by match to protein family HMM PF01134; hypothetical protein 1238164 gidA 4541993 gidA Clostridium novyi NT hypothetical protein YP_878115.1 1236887 D 386415 CDS YP_878116.1 118444457 4540057 1239030..1239338 1 NC_008593.1 Phage terminase small subunit 1239338 4540057 NT01CX_2043 Clostridium novyi NT Phage terminase small subunit YP_878116.1 1239030 D 386415 CDS YP_878117.1 118444166 4540833 1239331..1239561 1 NC_008593.1 hypothetical protein 1239561 4540833 NT01CX_2044 Clostridium novyi NT hypothetical protein YP_878117.1 1239331 D 386415 CDS YP_878118.1 118443389 4541289 1239592..1239891 1 NC_008593.1 hypothetical protein 1239891 4541289 NT01CX_2045 Clostridium novyi NT hypothetical protein YP_878118.1 1239592 D 386415 CDS YP_878119.1 118443783 4541127 1240315..1241559 1 NC_008593.1 hypothetical protein 1241559 4541127 NT01CX_2046 Clostridium novyi NT hypothetical protein YP_878119.1 1240315 D 386415 CDS YP_878120.1 118443211 4539629 1241903..1243234 1 NC_008593.1 lipase 1243234 4539629 NT01CX_2047 Clostridium novyi NT lipase YP_878120.1 1241903 D 386415 CDS YP_878121.1 118444587 4540128 1243413..1244723 1 NC_008593.1 hypothetical protein 1244723 4540128 NT01CX_2048 Clostridium novyi NT hypothetical protein YP_878121.1 1243413 D 386415 CDS YP_878122.1 118444040 4540667 complement(1244800..1245303) 1 NC_008593.1 identified by match to protein family HMM PF00583; acetyltransferase 1245303 4540667 NT01CX_2049 Clostridium novyi NT acetyltransferase YP_878122.1 1244800 R 386415 CDS YP_878123.1 118444330 4540558 1245472..1245846 1 NC_008593.1 hypothetical protein 1245846 4540558 NT01CX_2050 Clostridium novyi NT hypothetical protein YP_878123.1 1245472 D 386415 CDS YP_878124.1 118442881 4541965 1246009..1247184 1 NC_008593.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme 1247184 4541965 NT01CX_2051 Clostridium novyi NT NADP-dependent malic enzyme YP_878124.1 1246009 D 386415 CDS YP_878125.1 118443373 4541846 1247187..1248026 1 NC_008593.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1248026 4541846 NT01CX_2052 Clostridium novyi NT fumarate hydratase YP_878125.1 1247187 D 386415 CDS YP_878126.1 118444035 4540664 1248050..1248595 1 NC_008593.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase, class I 1248595 4540664 NT01CX_2053 Clostridium novyi NT fumarate hydratase, class I YP_878126.1 1248050 D 386415 CDS YP_878127.1 118443126 4541739 1249033..1250703 1 NC_008593.1 identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic protein 1250703 4541739 NT01CX_2054 Clostridium novyi NT peptide ABC transporter periplasmic protein YP_878127.1 1249033 D 386415 CDS YP_878128.1 118443676 4541005 1250884..1252323 1 NC_008593.1 ISBma2, transposase 1252323 4541005 NT01CX_2055 Clostridium novyi NT ISBma2, transposase YP_878128.1 1250884 D 386415 CDS YP_878129.1 118444218 4539690 1252553..1253341 1 NC_008593.1 hypothetical protein 1253341 4539690 NT01CX_2056 Clostridium novyi NT hypothetical protein YP_878129.1 1252553 D 386415 CDS YP_878130.1 118444640 4539777 1253391..1253939 1 NC_008593.1 hypothetical protein 1253939 4539777 NT01CX_2057 Clostridium novyi NT hypothetical protein YP_878130.1 1253391 D 386415 CDS YP_878131.1 118443140 4541692 1254160..1255059 1 NC_008593.1 hypothetical protein 1255059 4541692 NT01CX_2058 Clostridium novyi NT hypothetical protein YP_878131.1 1254160 D 386415 CDS YP_878132.1 118443658 4539770 1255162..1255338 1 NC_008593.1 hypothetical protein 1255338 4539770 NT01CX_2059 Clostridium novyi NT hypothetical protein YP_878132.1 1255162 D 386415 CDS YP_878133.1 118444431 4540140 1255578..1256183 1 NC_008593.1 identified by match to protein family HMM PF04647; agrB-like protein 1256183 4540140 NT01CX_2060 Clostridium novyi NT agrB-like protein YP_878133.1 1255578 D 386415 CDS YP_878134.1 118444615 4539584 1256167..1256319 1 NC_008593.1 hypothetical protein 1256319 4539584 NT01CX_2061 Clostridium novyi NT hypothetical protein YP_878134.1 1256167 D 386415 CDS YP_878135.1 118444219 4539691 complement(1256328..1257641) 1 NC_008593.1 accessory gene regulator protein C 1257641 4539691 NT01CX_2062 Clostridium novyi NT accessory gene regulator protein C YP_878135.1 1256328 R 386415 CDS YP_878136.1 118443782 4541052 complement(1257629..1258375) 1 NC_008593.1 identified by match to protein family HMM PF04397; response regulator BlpR 1258375 4541052 NT01CX_2063 Clostridium novyi NT response regulator BlpR YP_878136.1 1257629 R 386415 CDS YP_878137.1 118443229 4539640 1258567..1258659 1 NC_008593.1 hypothetical protein 1258659 4539640 NT01CX_2064 Clostridium novyi NT hypothetical protein YP_878137.1 1258567 D 386415 CDS YP_878138.1 118444350 4540573 1258761..1260062 1 NC_008593.1 identified by match to protein family HMM PF00860; xanthine/uracil permease 1260062 4540573 NT01CX_2065 Clostridium novyi NT xanthine/uracil permease YP_878138.1 1258761 D 386415 CDS YP_878139.1 118444005 4540638 1260192..1260626 1 NC_008593.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1260626 4540638 NT01CX_2066 Clostridium novyi NT MarR family transcriptional regulator YP_878139.1 1260192 D 386415 CDS YP_878140.1 118443620 4541852 1260665..1261045 1 NC_008593.1 hypothetical protein 1261045 4541852 NT01CX_2068 Clostridium novyi NT hypothetical protein YP_878140.1 1260665 D 386415 CDS YP_878141.1 118443449 4541889 1260672..1260764 1 NC_008593.1 hypothetical protein 1260764 4541889 NT01CX_2067 Clostridium novyi NT hypothetical protein YP_878141.1 1260672 D 386415 CDS YP_878142.1 118443099 4541758 1261191..1262294 1 NC_008593.1 hypothetical protein 1262294 4541758 NT01CX_2069 Clostridium novyi NT hypothetical protein YP_878142.1 1261191 D 386415 CDS YP_878143.1 118443522 4541828 1262421..1263977 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1263977 4541828 NT01CX_2070 Clostridium novyi NT ABC transporter ATP-binding protein YP_878143.1 1262421 D 386415 CDS YP_878144.1 118442982 4541080 1264147..1265526 1 NC_008593.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1265526 tnaA 4541080 tnaA Clostridium novyi NT tryptophanase YP_878144.1 1264147 D 386415 CDS YP_878145.1 118444356 4540444 1265878..1267236 1 NC_008593.1 identified by match to protein family HMM PF00209; sodium-dependent amino acid transporter 1267236 4540444 NT01CX_2072 Clostridium novyi NT sodium-dependent amino acid transporter YP_878145.1 1265878 D 386415 CDS YP_878146.1 118443900 4540441 complement(1267338..1268525) 1 NC_008593.1 identified by match to protein family HMM PF00375; serine/threonine sodium symporter 1268525 4540441 NT01CX_2073 Clostridium novyi NT serine/threonine sodium symporter YP_878146.1 1267338 R 386415 CDS YP_878147.1 118443793 4541134 1269805..1270767 1 NC_008593.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127; threonine dehydratase 1270767 ilvA 4541134 ilvA Clostridium novyi NT threonine dehydratase YP_878147.1 1269805 D 386415 CDS YP_878148.1 118443252 4540338 1271201..1271539 1 NC_008593.1 hypothetical protein 1271539 4540338 NT01CX_2075 Clostridium novyi NT hypothetical protein YP_878148.1 1271201 D 386415 CDS YP_878149.1 118444611 4540109 1271665..1272306 1 NC_008593.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1272306 4540109 NT01CX_2076 Clostridium novyi NT phosphoglycerate mutase family protein YP_878149.1 1271665 D 386415 CDS YP_878150.1 118444112 4540047 1272657..1273724 1 NC_008593.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1273724 cobT 4540047 cobT Clostridium novyi NT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_878150.1 1272657 D 386415 CDS YP_878151.1 118443775 4541048 1273730..1274290 1 NC_008593.1 identified by match to protein family HMM PF02283; cobinamide kinase 1274290 4541048 NT01CX_2078 Clostridium novyi NT cobinamide kinase YP_878151.1 1273730 D 386415 CDS YP_878152.1 118443243 4540333 1274302..1275054 1 NC_008593.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317; cobalamin 5'-phosphate synthase 1275054 cobS 4540333 cobS Clostridium novyi NT cobalamin 5'-phosphate synthase YP_878152.1 1274302 D 386415 CDS YP_878153.1 118444518 4540151 1275051..1275650 1 NC_008593.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1275650 4540151 NT01CX_2080 Clostridium novyi NT phosphoglycerate mutase family protein YP_878153.1 1275051 D 386415 CDS YP_878154.1 118444461 4540060 1275665..1277182 1 NC_008593.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1277182 cobQ 4540060 cobQ Clostridium novyi NT cobyric acid synthase YP_878154.1 1275665 D 386415 CDS YP_878155.1 118443751 4541377 1277166..1278131 1 NC_008593.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 1278131 cobD 4541377 cobD Clostridium novyi NT cobalamin biosynthesis protein CobD YP_878155.1 1277166 D 386415 CDS YP_878156.1 118444170 4540836 1278128..1279189 1 NC_008593.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01140; L-threonine-O-3-phosphate decarboxylase 1279189 4540836 NT01CX_2083 Clostridium novyi NT L-threonine-O-3-phosphate decarboxylase YP_878156.1 1278128 D 386415 CDS YP_878157.1 118444317 4540801 1279253..1280212 1 NC_008593.1 identified by match to protein family HMM PF01497; iron compound ABC transporter substrate-binding protein 1280212 4540801 NT01CX_2084 Clostridium novyi NT iron compound ABC transporter substrate-binding protein YP_878157.1 1279253 D 386415 CDS YP_878158.1 118443298 4541918 1280248..1281300 1 NC_008593.1 identified by match to protein family HMM PF01032; iron (III) dicitrate transport system permease 1281300 4541918 NT01CX_2085 Clostridium novyi NT iron (III) dicitrate transport system permease YP_878158.1 1280248 D 386415 CDS YP_878159.1 118443502 4541813 1281304..1282089 1 NC_008593.1 identified by match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1282089 4541813 NT01CX_2086 Clostridium novyi NT iron compound ABC transporter ATP-binding protein YP_878159.1 1281304 D 386415 CDS YP_878160.1 118443922 4541505 1282208..1283041 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) 1283041 4541505 NT01CX_2087 Clostridium novyi NT methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) YP_878160.1 1282208 D 386415 CDS YP_878161.1 118443156 4541707 1283068..1283931 1 NC_008593.1 identified by match to protein family HMM PF00753; dihydropteroate synthase 1283931 4541707 NT01CX_2088 Clostridium novyi NT dihydropteroate synthase YP_878161.1 1283068 D 386415 CDS YP_878162.1 118443579 4541877 1284240..1284908 1 NC_008593.1 hypothetical protein 1284908 4541877 NT01CX_2089 Clostridium novyi NT hypothetical protein YP_878162.1 1284240 D 386415 CDS YP_878163.1 118442926 4539602 1285062..1286501 1 NC_008593.1 ISBma2, transposase 1286501 4539602 NT01CX_2090 Clostridium novyi NT ISBma2, transposase YP_878163.1 1285062 D 386415 CDS YP_878164.1 118443413 4541724 complement(1286550..1287704) 1 NC_008593.1 identified by match to protein family HMM PF01170; nucleic acid methylase 1287704 4541724 NT01CX_2091 Clostridium novyi NT nucleic acid methylase YP_878164.1 1286550 R 386415 CDS YP_878165.1 118444164 4540831 1287872..1288582 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1288582 4540831 NT01CX_2092 Clostridium novyi NT ribosomal large subunit pseudouridine synthase B YP_878165.1 1287872 D 386415 CDS YP_878166.1 118444697 4540217 1288699..1289589 1 NC_008593.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; SIS domain-containing protein 1289589 4540217 NT01CX_2093 Clostridium novyi NT SIS domain-containing protein YP_878166.1 1288699 D 386415 CDS YP_878167.1 118444507 4539924 1289730..1290956 1 NC_008593.1 identified by match to protein family HMM PF03486; NAD(FAD)-utilizing dehydrogenase 1290956 4539924 NT01CX_2094 Clostridium novyi NT NAD(FAD)-utilizing dehydrogenase YP_878167.1 1289730 D 386415 CDS YP_878168.1 118443630 4541859 1291041..1291700 1 NC_008593.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1291700 cmk 4541859 cmk Clostridium novyi NT cytidylate kinase YP_878168.1 1291041 D 386415 CDS YP_878169.1 118443423 4541946 1291713..1293617 1 NC_008593.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1293617 4541946 NT01CX_2096 Clostridium novyi NT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_878169.1 1291713 D 386415 CDS YP_878170.1 118443986 4540375 1293751..1294620 1 NC_008593.1 identified by match to protein family HMM PF00583; acetyltransferase 1294620 4540375 NT01CX_2097 Clostridium novyi NT acetyltransferase YP_878170.1 1293751 D 386415 CDS YP_878171.1 118444286 4539708 complement(1294666..1294836) 1 NC_008593.1 hypothetical protein 1294836 4539708 NT01CX_2098 Clostridium novyi NT hypothetical protein YP_878171.1 1294666 R 386415 CDS YP_878172.1 118443295 4541915 1295021..1295992 1 NC_008593.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01471; glycosyl hydrolase family protein 1295992 4541915 NT01CX_2099 Clostridium novyi NT glycosyl hydrolase family protein YP_878172.1 1295021 D 386415 CDS YP_878173.1 118444239 4541532 1296199..1296684 1 NC_008593.1 flavodoxin 1296684 4541532 NT01CX_2100 Clostridium novyi NT flavodoxin YP_878173.1 1296199 D 386415 CDS YP_878174.1 118443539 4541938 1296785..1298329 1 NC_008593.1 identified by match to protein family HMM PF01289; tetanolysin O 1298329 4541938 NT01CX_2101 Clostridium novyi NT tetanolysin O YP_878174.1 1296785 D 386415 CDS YP_878175.1 118443165 4540308 1298550..1299257 1 NC_008593.1 hypothetical protein 1299257 4540308 NT01CX_2102 Clostridium novyi NT hypothetical protein YP_878175.1 1298550 D 386415 CDS YP_878176.1 118444359 4540447 complement(1299327..1300535) 1 NC_008593.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 1300535 gltS 4540447 gltS Clostridium novyi NT sodium/glutamate symporter YP_878176.1 1299327 R 386415 CDS YP_878177.1 118443818 4540818 1300822..1302180 1 NC_008593.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1302180 miaB 4540818 miaB Clostridium novyi NT (dimethylallyl)adenosine tRNA methylthiotransferase YP_878177.1 1300822 D 386415 CDS YP_878178.1 118443496 4540206 1302232..1304961 1 NC_008593.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1304961 mutS 4540206 mutS Clostridium novyi NT DNA mismatch repair protein MutS YP_878178.1 1302232 D 386415 CDS YP_878179.1 118443055 4541779 1304981..1306918 1 NC_008593.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1306918 mutL 4541779 mutL Clostridium novyi NT DNA mismatch repair protein YP_878179.1 1304981 D 386415 CDS YP_878180.1 118444282 4539705 1306931..1307875 1 NC_008593.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1307875 miaA 4539705 miaA Clostridium novyi NT tRNA delta(2)-isopentenylpyrophosphate transferase YP_878180.1 1306931 D 386415 CDS YP_878181.1 118443865 4541681 1307898..1308131 1 NC_008593.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; Hfq protein 1308131 4541681 NT01CX_2108 Clostridium novyi NT Hfq protein YP_878181.1 1307898 D 386415 CDS YP_878182.1 118444175 4540841 1308229..1310655 1 NC_008593.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; 5-methyltetrahydrofolate--homocysteine methyltransferase 1310655 4540841 NT01CX_2109 Clostridium novyi NT 5-methyltetrahydrofolate--homocysteine methyltransferase YP_878182.1 1308229 D 386415 CDS YP_878183.1 118444349 4540572 1310757..1312037 1 NC_008593.1 identified by match to protein family HMM PF06838; aluminum resistance protein 1312037 4540572 NT01CX_2110 Clostridium novyi NT aluminum resistance protein YP_878183.1 1310757 D 386415 CDS YP_878184.1 118443690 4540230 complement(1312139..1312753) 1 NC_008593.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1312753 lexA 4540230 lexA Clostridium novyi NT LexA repressor YP_878184.1 1312139 R 386415 CDS YP_878185.1 118443273 4541064 1312889..1313290 1 NC_008593.1 hypothetical protein 1313290 4541064 NT01CX_2112 Clostridium novyi NT hypothetical protein YP_878185.1 1312889 D 386415 CDS YP_878186.1 118444090 4539948 complement(1313385..1314209) 1 NC_008593.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; integrase/recombinase 1314209 4539948 NT01CX_2113 Clostridium novyi NT integrase/recombinase YP_878186.1 1313385 R 386415 CDS YP_878187.1 118444569 4540114 complement(1314952..1316058) 1 NC_008593.1 identified by match to protein family HMM PF01168; amino acid racemase 1316058 4540114 NT01CX_2114 Clostridium novyi NT amino acid racemase YP_878187.1 1314952 R 386415 CDS YP_878188.1 118444465 4540064 complement(1316073..1317491) 1 NC_008593.1 identified by match to protein family HMM PF00324; amino acid transporter 1317491 4540064 NT01CX_2115 Clostridium novyi NT amino acid transporter YP_878188.1 1316073 R 386415 CDS YP_878189.1 118442987 4541085 complement(1317540..1318952) 1 NC_008593.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 1318952 lysA 4541085 lysA Clostridium novyi NT diaminopimelate decarboxylase YP_878189.1 1317540 R 386415 CDS YP_878190.1 118443391 4541290 complement(1319049..1320770) 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1320770 4541290 NT01CX_2117 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878190.1 1319049 R 386415 CDS YP_878191.1 118443808 4540811 complement(1321041..1322474) 1 NC_008593.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1322474 purB 4540811 purB Clostridium novyi NT adenylosuccinate lyase YP_878191.1 1321041 R 386415 CDS YP_878192.1 118444588 4540129 complement(1322633..1322887) 1 NC_008593.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein 1322887 4540129 NT01CX_2119 Clostridium novyi NT phosphocarrier protein YP_878192.1 1322633 R 386415 CDS YP_878193.1 118443632 4541860 complement(1322973..1323875) 1 NC_008593.1 identified by match to protein family HMM PF00155; aspartate transaminase 1323875 4541860 NT01CX_2120 Clostridium novyi NT aspartate transaminase YP_878193.1 1322973 R 386415 CDS YP_878194.1 118444062 4541195 complement(1323844..1324167) 1 NC_008593.1 aspartate aminotransferase 1324167 4541195 NT01CX_2121 Clostridium novyi NT aspartate aminotransferase YP_878194.1 1323844 R 386415 CDS YP_878195.1 118444501 4539919 complement(1324300..1325814) 1 NC_008593.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1325814 4539919 NT01CX_2122 Clostridium novyi NT phosphodiesterase YP_878195.1 1324300 R 386415 CDS YP_878196.1 118442927 4539603 complement(1326104..1327156) 1 NC_008593.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1327156 recA 4539603 recA Clostridium novyi NT recombinase A YP_878196.1 1326104 R 386415 CDS YP_878197.1 118443363 4541838 complement(1327307..1327849) 1 NC_008593.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1327849 pgsA 4541838 pgsA Clostridium novyi NT CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_878197.1 1327307 R 386415 CDS YP_878198.1 118443956 4540749 complement(1327833..1329167) 1 NC_008593.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein 1329167 4540749 NT01CX_2125 Clostridium novyi NT tRNA modifying protein YP_878198.1 1327833 R 386415 CDS YP_878199.1 118444299 4539717 complement(1329260..1331605) 1 NC_008593.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1331605 4539717 NT01CX_2126 Clostridium novyi NT FtsK/SpoIIIE family protein YP_878199.1 1329260 R 386415 CDS YP_878200.1 118442934 4539608 complement(1331695..1332396) 1 NC_008593.1 identified by match to protein family HMM PF00574; ATP-dependent Clp protease proteolytic subunit 1332396 4539608 NT01CX_2127 Clostridium novyi NT ATP-dependent Clp protease proteolytic subunit YP_878200.1 1331695 R 386415 CDS YP_878201.1 118443216 4539633 complement(1332453..1333658) 1 NC_008593.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1333658 4539633 NT01CX_2128 Clostridium novyi NT aspartate kinase I YP_878201.1 1332453 R 386415 CDS YP_878202.1 118443748 4541375 complement(1333682..1333957) 1 NC_008593.1 similar to YLMC B. subtilis; identified by match to protein family HMM PF05239; hypothetical protein 1333957 4541375 NT01CX_2129 Clostridium novyi NT hypothetical protein YP_878202.1 1333682 R 386415 CDS YP_878203.1 118443480 4540191 complement(1334097..1336214) 1 NC_008593.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM PF07650; polynucleotide phosphorylase/polyadenylase 1336214 4540191 NT01CX_2130 Clostridium novyi NT polynucleotide phosphorylase/polyadenylase YP_878203.1 1334097 R 386415 CDS YP_878204.1 118443878 4540423 complement(1336327..1336590) 1 NC_008593.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1336590 rpsO 4540423 rpsO Clostridium novyi NT 30S ribosomal protein S15 YP_878204.1 1336327 R 386415 CDS YP_878205.1 118444321 4540805 complement(1336737..1337663) 1 NC_008593.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1337663 ribF 4540805 ribF Clostridium novyi NT bifunctional riboflavin kinase/FMN adenylyltransferase YP_878205.1 1336737 R 386415 CDS YP_878206.1 118443304 4541923 complement(1337675..1338544) 1 NC_008593.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1338544 truB 4541923 truB Clostridium novyi NT tRNA pseudouridine synthase B YP_878206.1 1337675 R 386415 CDS YP_878207.1 118443731 4540516 complement(1338544..1339503) 1 NC_008593.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; exopolyphosphatase 1339503 4540516 NT01CX_2134 Clostridium novyi NT exopolyphosphatase YP_878207.1 1338544 R 386415 CDS YP_878208.1 118444128 4540979 complement(1339490..1339855) 1 NC_008593.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1339855 rbfA 4540979 rbfA Clostridium novyi NT ribosome-binding factor A YP_878208.1 1339490 R 386415 CDS YP_878209.1 118444571 4540115 complement(1339869..1341920) 1 NC_008593.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1341920 infB 4540115 infB Clostridium novyi NT translation initiation factor IF-2 YP_878209.1 1339869 R 386415 CDS YP_878210.1 118443067 4541788 complement(1341946..1342209) 1 NC_008593.1 identified by match to protein family HMM PF04296; hypothetical protein 1342209 4541788 NT01CX_2137 Clostridium novyi NT hypothetical protein YP_878210.1 1341946 R 386415 CDS YP_878211.1 118443498 4541810 complement(1342239..1343285) 1 NC_008593.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1343285 nusA 4541810 nusA Clostridium novyi NT transcription elongation factor NusA YP_878211.1 1342239 R 386415 CDS YP_878212.1 118443860 4541676 complement(1343298..1343762) 1 NC_008593.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1343762 4541676 NT01CX_2139 Clostridium novyi NT hypothetical protein YP_878212.1 1343298 R 386415 CDS YP_878213.1 118443832 4540829 complement(1344013..1348347) 1 NC_008593.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1348347 polC 4540829 polC Clostridium novyi NT DNA polymerase III PolC YP_878213.1 1344013 R 386415 CDS YP_878214.1 118444402 4541204 complement(1348419..1349468) 1 NC_008593.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1349468 ispG 4541204 ispG Clostridium novyi NT 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_878214.1 1348419 R 386415 CDS YP_878215.1 118443163 4540306 complement(1349487..1350524) 1 NC_008593.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1350524 4540306 NT01CX_2142 Clostridium novyi NT membrane-associated zinc metalloprotease YP_878215.1 1349487 R 386415 CDS YP_878216.1 118443580 4541878 complement(1350554..1351711) 1 NC_008593.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1351711 4541878 NT01CX_2143 Clostridium novyi NT 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_878216.1 1350554 R 386415 CDS YP_878217.1 118443118 4541733 complement(1351857..1352657) 1 NC_008593.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1352657 cdsA 4541733 cdsA Clostridium novyi NT phosphatidate cytidylyltransferase YP_878217.1 1351857 R 386415 CDS YP_878218.1 118443581 4541879 complement(1352668..1353426) 1 NC_008593.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1353426 uppS 4541879 uppS Clostridium novyi NT undecaprenyl diphosphate synthase YP_878218.1 1352668 R 386415 CDS YP_878219.1 118443357 4541833 complement(1353521..1354078) 1 NC_008593.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1354078 frr 4541833 frr Clostridium novyi NT ribosome recycling factor YP_878219.1 1353521 R 386415 CDS YP_878220.1 118444622 4539589 complement(1354095..1354805) 1 NC_008593.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1354805 pyrH 4539589 pyrH Clostridium novyi NT uridylate kinase YP_878220.1 1354095 R 386415 CDS YP_878221.1 118444427 4540136 complement(1354922..1355842) 1 NC_008593.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1355842 tsf 4540136 tsf Clostridium novyi NT elongation factor Ts YP_878221.1 1354922 R 386415 CDS YP_878222.1 118442952 4539720 complement(1355877..1356578) 1 NC_008593.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1356578 rpsB 4539720 rpsB Clostridium novyi NT 30S ribosomal protein S2 YP_878222.1 1355877 R 386415 CDS YP_878223.1 118442955 4539723 complement(1356798..1357577) 1 NC_008593.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1357577 4539723 NT01CX_2150 Clostridium novyi NT transcriptional repressor CodY YP_878223.1 1356798 R 386415 CDS YP_878224.1 118443725 4540510 complement(1357770..1359860) 1 NC_008593.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1359860 topA 4540510 topA Clostridium novyi NT DNA topoisomerase I YP_878224.1 1357770 R 386415 CDS YP_878225.1 118443914 4541500 complement(1359931..1361010) 1 NC_008593.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA uptake protein 1361010 4541500 NT01CX_2152 Clostridium novyi NT DNA uptake protein YP_878225.1 1359931 R 386415 CDS YP_878226.1 118444479 4539958 complement(1361029..1361400) 1 NC_008593.1 Mg chelatase-like protein 1361400 4539958 NT01CX_2153 Clostridium novyi NT Mg chelatase-like protein YP_878226.1 1361029 R 386415 CDS YP_878227.1 118444009 4540642 1361826..1361972 1 NC_008593.1 repressor protein (phage related) 1361972 4540642 NT01CX_2154 Clostridium novyi NT repressor protein (phage related) YP_878227.1 1361826 D 386415 CDS YP_878228.1 118444424 4540133 complement(1362218..1364575) 1 NC_008593.1 hypothetical protein 1364575 4540133 NT01CX_2155 Clostridium novyi NT hypothetical protein YP_878228.1 1362218 R 386415 CDS YP_878229.1 118442994 4541089 complement(1364588..1365676) 1 NC_008593.1 identified by match to protein family HMM PF00004; ATPase AAA 1365676 4541089 NT01CX_2156 Clostridium novyi NT ATPase AAA YP_878229.1 1364588 R 386415 CDS YP_878230.1 118443521 4541827 complement(1365917..1367212) 1 NC_008593.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase 1367212 4541827 NT01CX_2157 Clostridium novyi NT N-acetylmuramoyl-L-alanine amidase YP_878230.1 1365917 R 386415 CDS YP_878231.1 118443414 4541725 complement(1367251..1367511) 1 NC_008593.1 hypothetical protein 1367511 4541725 NT01CX_2158 Clostridium novyi NT hypothetical protein YP_878231.1 1367251 R 386415 CDS YP_878232.1 118443941 4540278 complement(1367575..1369386) 1 NC_008593.1 identified by match to protein family HMM TIGR01665; Phage endopeptidase 1369386 4540278 NT01CX_2159 Clostridium novyi NT Phage endopeptidase YP_878232.1 1367575 R 386415 CDS YP_878233.1 118443242 4540332 complement(1369470..1369604) 1 NC_008593.1 Gp17 protein-like protein 1369604 4540332 NT01CX_2160 Clostridium novyi NT Gp17 protein-like protein YP_878233.1 1369470 R 386415 CDS YP_878234.1 118442967 4539734 complement(1369597..1369932) 1 NC_008593.1 hypothetical protein 1369932 4539734 NT01CX_2161 Clostridium novyi NT hypothetical protein YP_878234.1 1369597 R 386415 CDS YP_878235.1 118444076 4539936 complement(1369943..1371787) 1 NC_008593.1 phage pre-neck appendage-like protein 1371787 4539936 NT01CX_2162 Clostridium novyi NT phage pre-neck appendage-like protein YP_878235.1 1369943 R 386415 CDS YP_878236.1 118443696 4540234 complement(1371778..1372461) 1 NC_008593.1 identified by match to protein family HMM TIGR01633; hypothetical protein 1372461 4540234 NT01CX_2163 Clostridium novyi NT hypothetical protein YP_878236.1 1371778 R 386415 CDS YP_878237.1 118444412 4541213 complement(1372464..1375013) 1 NC_008593.1 identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760; TP901 family phage tail tape measure protein 1375013 4541213 NT01CX_2164 Clostridium novyi NT TP901 family phage tail tape measure protein YP_878237.1 1372464 R 386415 CDS YP_878238.1 118443996 4540383 complement(1375026..1375253) 1 NC_008593.1 peptide methionine sulfoxide reductase domain-containing protein 1375253 4540383 NT01CX_2165 Clostridium novyi NT peptide methionine sulfoxide reductase domain-containing protein YP_878238.1 1375026 R 386415 CDS YP_878239.1 118443341 4539855 complement(1375319..1375696) 1 NC_008593.1 hypothetical protein 1375696 4539855 NT01CX_2166 Clostridium novyi NT hypothetical protein YP_878239.1 1375319 R 386415 CDS YP_878240.1 118442879 4542002 complement(1375713..1375970) 1 NC_008593.1 hypothetical protein 1375970 4542002 NT01CX_2167 Clostridium novyi NT hypothetical protein YP_878240.1 1375713 R 386415 CDS YP_878241.1 118442869 4541992 complement(1376020..1376649) 1 NC_008593.1 hypothetical protein 1376649 4541992 NT01CX_2168 Clostridium novyi NT hypothetical protein YP_878241.1 1376020 R 386415 CDS YP_878242.1 118444251 4541542 complement(1376651..1377019) 1 NC_008593.1 hypothetical protein 1377019 4541542 NT01CX_2169 Clostridium novyi NT hypothetical protein YP_878242.1 1376651 R 386415 CDS YP_878243.1 118444197 4541326 complement(1377024..1377422) 1 NC_008593.1 hypothetical protein 1377422 4541326 NT01CX_2170 Clostridium novyi NT hypothetical protein YP_878243.1 1377024 R 386415 CDS YP_878244.1 118443774 4541047 complement(1377415..1377744) 1 NC_008593.1 identified by match to protein family HMM TIGR01563; phage head-tail adaptor 1377744 4541047 NT01CX_2171 Clostridium novyi NT phage head-tail adaptor YP_878244.1 1377415 R 386415 CDS YP_878245.1 118444308 4540794 complement(1377744..1378298) 1 NC_008593.1 hypothetical protein 1378298 4540794 NT01CX_2172 Clostridium novyi NT hypothetical protein YP_878245.1 1377744 R 386415 CDS YP_878246.1 118443909 4541497 complement(1378344..1379036) 1 NC_008593.1 hypothetical protein 1379036 4541497 NT01CX_2173 Clostridium novyi NT hypothetical protein YP_878246.1 1378344 R 386415 CDS YP_878247.1 118443871 4541685 complement(1379197..1379793) 1 NC_008593.1 scaffold protein 1379793 4541685 NT01CX_2174 Clostridium novyi NT scaffold protein YP_878247.1 1379197 R 386415 CDS YP_878248.1 118443459 4541897 complement(1379911..1380420) 1 NC_008593.1 hypothetical protein 1380420 4541897 NT01CX_2175 Clostridium novyi NT hypothetical protein YP_878248.1 1379911 R 386415 CDS YP_878249.1 118443044 4541770 complement(1380512..1380736) 1 NC_008593.1 hypothetical protein 1380736 4541770 NT01CX_2176 Clostridium novyi NT hypothetical protein YP_878249.1 1380512 R 386415 CDS YP_878250.1 118444563 4540401 complement(1380741..1382012) 1 NC_008593.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; minor head protein 1382012 4540401 NT01CX_2177 Clostridium novyi NT minor head protein YP_878250.1 1380741 R 386415 CDS YP_878251.1 118444038 4540665 complement(1381999..1383462) 1 NC_008593.1 identified by match to protein family HMM PF05133; Phage portal protein, SPP1 Gp6-like 1383462 4540665 NT01CX_2178 Clostridium novyi NT Phage portal protein, SPP1 Gp6-like YP_878251.1 1381999 R 386415 CDS YP_878252.1 118443517 4541824 complement(1383466..1384725) 1 NC_008593.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; PBSX family phage terminase large subunit 1384725 4541824 NT01CX_2179 Clostridium novyi NT PBSX family phage terminase large subunit YP_878252.1 1383466 R 386415 CDS YP_878253.1 118444122 4540973 complement(1384718..1385179) 1 NC_008593.1 identified by match to protein family HMM PF03592; phage terminase family protein 1385179 4540973 NT01CX_2180 Clostridium novyi NT phage terminase family protein YP_878253.1 1384718 R 386415 CDS YP_878254.1 118443633 4541861 complement(1385874..1386314) 1 NC_008593.1 RNA polymerase sigma factor 1386314 4541861 NT01CX_2181 Clostridium novyi NT RNA polymerase sigma factor YP_878254.1 1385874 R 386415 CDS YP_878255.1 118444276 4539701 complement(1386393..1387205) 1 NC_008593.1 identified by match to protein family HMM PF02810; SecC motif-containing protein 1387205 4539701 NT01CX_2182 Clostridium novyi NT SecC motif-containing protein YP_878255.1 1386393 R 386415 CDS YP_878256.1 118443853 4540867 complement(1387216..1387737) 1 NC_008593.1 hypothetical protein 1387737 4540867 NT01CX_2183 Clostridium novyi NT hypothetical protein YP_878256.1 1387216 R 386415 CDS YP_878257.1 118443184 4541472 complement(1388042..1388191) 1 NC_008593.1 hypothetical protein 1388191 4541472 NT01CX_2184 Clostridium novyi NT hypothetical protein YP_878257.1 1388042 R 386415 CDS YP_878258.1 118444435 4540142 complement(1388284..1389048) 1 NC_008593.1 hypothetical protein 1389048 4540142 NT01CX_2185 Clostridium novyi NT hypothetical protein YP_878258.1 1388284 R 386415 CDS YP_878259.1 118444216 4539688 complement(1389051..1389602) 1 NC_008593.1 hypothetical protein 1389602 4539688 NT01CX_2186 Clostridium novyi NT hypothetical protein YP_878259.1 1389051 R 386415 CDS YP_878260.1 118443582 4541880 complement(1389679..1389876) 1 NC_008593.1 hypothetical protein 1389876 4541880 NT01CX_2187 Clostridium novyi NT hypothetical protein YP_878260.1 1389679 R 386415 CDS YP_878261.1 118442971 4539738 complement(1389892..1389999) 1 NC_008593.1 hypothetical protein 1389999 4539738 NT01CX_2188 Clostridium novyi NT hypothetical protein YP_878261.1 1389892 R 386415 CDS YP_878262.1 118443311 4540614 complement(1390031..1390219) 1 NC_008593.1 hypothetical protein 1390219 4540614 NT01CX_2189 Clostridium novyi NT hypothetical protein YP_878262.1 1390031 R 386415 CDS YP_878263.1 118444539 4540167 complement(1390226..1391128) 1 NC_008593.1 phage protein 1391128 4540167 NT01CX_2190 Clostridium novyi NT phage protein YP_878263.1 1390226 R 386415 CDS YP_878264.1 118444488 4539967 complement(1391138..1391329) 1 NC_008593.1 hypothetical protein 1391329 4539967 NT01CX_2191 Clostridium novyi NT hypothetical protein YP_878264.1 1391138 R 386415 CDS YP_878265.1 118443993 4540380 complement(1391340..1391936) 1 NC_008593.1 identified by match to protein family HMM PF04404; essential recombination function protein 1391936 4540380 NT01CX_2192 Clostridium novyi NT essential recombination function protein YP_878265.1 1391340 R 386415 CDS YP_878266.1 118443179 4540320 complement(1391948..1392481) 1 NC_008593.1 hypothetical protein 1392481 4540320 NT01CX_2193 Clostridium novyi NT hypothetical protein YP_878266.1 1391948 R 386415 CDS YP_878267.1 118444347 4540570 complement(1392529..1392810) 1 NC_008593.1 hypothetical protein 1392810 4540570 NT01CX_2194 Clostridium novyi NT hypothetical protein YP_878267.1 1392529 R 386415 CDS YP_878268.1 118443703 4540240 complement(1392825..1393016) 1 NC_008593.1 hypothetical protein 1393016 4540240 NT01CX_2195 Clostridium novyi NT hypothetical protein YP_878268.1 1392825 R 386415 CDS YP_878269.1 118443540 4541939 complement(1393029..1393184) 1 NC_008593.1 hypothetical protein 1393184 4541939 NT01CX_2196 Clostridium novyi NT hypothetical protein YP_878269.1 1393029 R 386415 CDS YP_878270.1 118442894 4541976 complement(1393200..1393916) 1 NC_008593.1 antirepressor 1393916 4541976 NT01CX_2197 Clostridium novyi NT antirepressor YP_878270.1 1393200 R 386415 CDS YP_878271.1 118444602 4540102 complement(1394025..1394162) 1 NC_008593.1 hypothetical protein 1394162 4540102 NT01CX_2198 Clostridium novyi NT hypothetical protein YP_878271.1 1394025 R 386415 CDS YP_878272.1 118443959 4540752 complement(1394174..1394962) 1 NC_008593.1 identified by match to protein family HMM PF03374; phage anti-repressor 1394962 4540752 NT01CX_2199 Clostridium novyi NT phage anti-repressor YP_878272.1 1394174 R 386415 CDS YP_878273.1 118444326 4540809 complement(1394959..1395174) 1 NC_008593.1 identified by match to protein family HMM PF01381; transcriptional regulator 1395174 4540809 NT01CX_2200 Clostridium novyi NT transcriptional regulator YP_878273.1 1394959 R 386415 CDS YP_878274.1 118443353 4541829 1395378..1395719 1 NC_008593.1 identified by match to protein family HMM PF01381; transcriptional regulator 1395719 4541829 NT01CX_2201 Clostridium novyi NT transcriptional regulator YP_878274.1 1395378 D 386415 CDS YP_878275.1 118442961 4539729 1395703..1396785 1 NC_008593.1 hypothetical protein 1396785 4539729 NT01CX_2202 Clostridium novyi NT hypothetical protein YP_878275.1 1395703 D 386415 CDS YP_878276.1 118444003 4540636 1396966..1398561 1 NC_008593.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; DNA recombinase 1398561 4540636 NT01CX_2203 Clostridium novyi NT DNA recombinase YP_878276.1 1396966 D 386415 CDS YP_878277.1 118444422 4540131 complement(1398533..1399576) 1 NC_008593.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 1399576 4540131 NT01CX_2204 Clostridium novyi NT Mg chelatase-like protein YP_878277.1 1398533 R 386415 CDS YP_878278.1 118444093 4539950 1399772..1400134 1 NC_008593.1 identified by match to protein family HMM PF02021; hypothetical protein 1400134 4539950 NT01CX_2205 Clostridium novyi NT hypothetical protein YP_878278.1 1399772 D 386415 CDS YP_878279.1 118444390 4541251 complement(1400194..1401003) 1 NC_008593.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1401003 rnhB 4541251 rnhB Clostridium novyi NT ribonuclease HII YP_878279.1 1400194 R 386415 CDS YP_878280.1 118443037 4539655 complement(1401009..1401851) 1 NC_008593.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1401851 rbgA 4539655 rbgA Clostridium novyi NT ribosomal biogenesis GTPase YP_878280.1 1401009 R 386415 CDS YP_878281.1 118443330 4540630 complement(1401930..1402280) 1 NC_008593.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1402280 rplS 4540630 rplS Clostridium novyi NT 50S ribosomal protein L19 YP_878281.1 1401930 R 386415 CDS YP_878282.1 118443416 4541727 complement(1402435..1403160) 1 NC_008593.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1403160 trmD 4541727 trmD Clostridium novyi NT tRNA (guanine-N(1)-)-methyltransferase YP_878282.1 1402435 R 386415 CDS YP_878283.1 118443705 4540242 complement(1403151..1403639) 1 NC_008593.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1403639 rimM 4540242 rimM Clostridium novyi NT 16S rRNA-processing protein RimM YP_878283.1 1403151 R 386415 CDS YP_878284.1 118443627 4541857 complement(1403722..1403949) 1 NC_008593.1 hypothetical protein 1403949 4541857 NT01CX_2211 Clostridium novyi NT hypothetical protein YP_878284.1 1403722 R 386415 CDS YP_878285.1 118443168 4540311 complement(1403969..1404226) 1 NC_008593.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1404226 rpsP 4540311 rpsP Clostridium novyi NT 30S ribosomal protein S16 YP_878285.1 1403969 R 386415 CDS YP_878286.1 118443987 4540376 complement(1404254..1405609) 1 NC_008593.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1405609 4540376 NT01CX_2213 Clostridium novyi NT signal recognition particle protein YP_878286.1 1404254 R 386415 CDS YP_878287.1 118443460 4541898 complement(1405620..1405967) 1 NC_008593.1 identified by match to protein family HMM PF04297; DNA-binding protein 1405967 4541898 NT01CX_2214 Clostridium novyi NT DNA-binding protein YP_878287.1 1405620 R 386415 CDS YP_878288.1 118443376 4541276 complement(1406047..1406955) 1 NC_008593.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1406955 ftsY 4541276 ftsY Clostridium novyi NT signal recognition particle-docking protein FtsY YP_878288.1 1406047 R 386415 CDS YP_878289.1 118442990 4541086 complement(1406987..1410544) 1 NC_008593.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1410544 4541086 NT01CX_2216 Clostridium novyi NT chromosome segregation protein SMC YP_878289.1 1406987 R 386415 CDS YP_878290.1 118444673 4539672 complement(1410740..1411000) 1 NC_008593.1 identified by match to protein family HMM PF04232; stage V sporulation protein S 1411000 4539672 NT01CX_2217 Clostridium novyi NT stage V sporulation protein S YP_878290.1 1410740 R 386415 CDS YP_878291.1 118443799 4541139 complement(1411075..1412154) 1 NC_008593.1 identified by match to protein family HMM PF04055; bioB/LipA-like protein 1412154 4541139 NT01CX_2218 Clostridium novyi NT bioB/LipA-like protein YP_878291.1 1411075 R 386415 CDS YP_878292.1 118444155 4541237 complement(1412141..1412854) 1 NC_008593.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1412854 rnc 4541237 rnc Clostridium novyi NT ribonuclease III YP_878292.1 1412141 R 386415 CDS YP_878293.1 118444598 4540098 complement(1412921..1413154) 1 NC_008593.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 1413154 acpP 4540098 acpP Clostridium novyi NT acyl carrier protein YP_878293.1 1412921 R 386415 CDS YP_878294.1 118444275 4541653 complement(1413233..1414231) 1 NC_008593.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1414231 plsX 4541653 plsX Clostridium novyi NT glycerol-3-phosphate acyltransferase PlsX YP_878294.1 1413233 R 386415 CDS YP_878295.1 118443744 4541371 complement(1414305..1414487) 1 NC_008593.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1414487 rpmF 4541371 rpmF Clostridium novyi NT 50S ribosomal protein L32 YP_878295.1 1414305 R 386415 CDS YP_878296.1 118443467 4541903 complement(1414502..1415002) 1 NC_008593.1 COG1399; identified by match to protein family HMM PF02620; hypothetical protein 1415002 4541903 NT01CX_2223 Clostridium novyi NT hypothetical protein YP_878296.1 1414502 R 386415 CDS YP_878297.1 118443056 4541780 complement(1415120..1416325) 1 NC_008593.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 1416325 ackA 4541780 ackA Clostridium novyi NT acetate kinase YP_878297.1 1415120 R 386415 CDS YP_878298.1 118444574 4540118 complement(1416375..1417373) 1 NC_008593.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 1417373 eutD 4540118 eutD Clostridium novyi NT phosphotransacetylase YP_878298.1 1416375 R 386415 CDS YP_878299.1 118444150 4541234 1417636..1418838 1 NC_008593.1 identified by match to protein family HMM PF05636; hypothetical protein 1418838 4541234 NT01CX_2226 Clostridium novyi NT hypothetical protein YP_878299.1 1417636 D 386415 CDS YP_878300.1 118443874 4541688 complement(1418905..1419177) 1 NC_008593.1 hypothetical protein 1419177 4541688 NT01CX_2227 Clostridium novyi NT hypothetical protein YP_878300.1 1418905 R 386415 CDS YP_878301.1 118443074 4541795 1418909..1420114 1 NC_008593.1 identified by match to protein family HMM PF07670; membrane protein 1420114 4541795 NT01CX_2228 Clostridium novyi NT membrane protein YP_878301.1 1418909 D 386415 CDS YP_878302.1 118443208 4539626 complement(1420094..1420621) 1 NC_008593.1 hypothetical protein 1420621 4539626 NT01CX_2229 Clostridium novyi NT hypothetical protein YP_878302.1 1420094 R 386415 CDS YP_878303.1 118442920 4540922 complement(1420630..1421115) 1 NC_008593.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1421115 coaD 4540922 coaD Clostridium novyi NT phosphopantetheine adenylyltransferase YP_878303.1 1420630 R 386415 CDS YP_878304.1 118444370 4540457 complement(1421117..1421674) 1 NC_008593.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 1421674 4540457 NT01CX_2231 Clostridium novyi NT methyltransferase YP_878304.1 1421117 R 386415 CDS YP_878305.1 118444201 4541330 complement(1421776..1423797) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643; ATP-dependent DNA helicase RecG 1423797 recG 4541330 recG Clostridium novyi NT ATP-dependent DNA helicase RecG YP_878305.1 1421776 R 386415 CDS YP_878306.1 118443794 4541135 complement(1423926..1425590) 1 NC_008593.1 identified by match to protein family HMM PF02734; degV protein 1425590 4541135 NT01CX_2233 Clostridium novyi NT degV protein YP_878306.1 1423926 R 386415 CDS YP_878307.1 118443132 4541745 complement(1425604..1425951) 1 NC_008593.1 identified by match to protein family HMM PF03780; alkaline shock protein 1425951 4541745 NT01CX_2234 Clostridium novyi NT alkaline shock protein YP_878307.1 1425604 R 386415 CDS YP_878308.1 118443905 4541493 1426150..1426341 1 NC_008593.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1426341 rpmB 4541493 rpmB Clostridium novyi NT 50S ribosomal protein L28 YP_878308.1 1426150 D 386415 CDS YP_878309.1 118443251 4540337 complement(1426586..1427221) 1 NC_008593.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 1427221 4540337 NT01CX_2236 Clostridium novyi NT thiamine pyrophosphokinase YP_878309.1 1426586 R 386415 CDS YP_878310.1 118442866 4541991 complement(1427223..1427873) 1 NC_008593.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1427873 4541991 NT01CX_2237 Clostridium novyi NT ribulose-phosphate 3-epimerase YP_878310.1 1427223 R 386415 CDS YP_878311.1 118444328 4540557 complement(1427867..1428739) 1 NC_008593.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1428739 4540557 NT01CX_2238 Clostridium novyi NT ribosome-associated GTPase YP_878311.1 1427867 R 386415 CDS YP_878312.1 118444123 4540974 complement(1428760..1430688) 1 NC_008593.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 1430688 4540974 NT01CX_2239 Clostridium novyi NT serine/threonine protein kinase YP_878312.1 1428760 R 386415 CDS YP_878313.1 118443426 4541949 complement(1430685..1431437) 1 NC_008593.1 identified by match to protein family HMM PF00481; PP2C phosphatase family protein 1431437 4541949 NT01CX_2240 Clostridium novyi NT PP2C phosphatase family protein YP_878313.1 1430685 R 386415 CDS YP_878314.1 118444223 4539694 complement(1431469..1432500) 1 NC_008593.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1432500 4539694 NT01CX_2241 Clostridium novyi NT ribosomal RNA large subunit methyltransferase N YP_878314.1 1431469 R 386415 CDS YP_878315.1 118444654 4539787 complement(1432509..1433840) 1 NC_008593.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 1433840 4539787 NT01CX_2242 Clostridium novyi NT sun protein YP_878315.1 1432509 R 386415 CDS YP_878316.1 118443191 4541479 complement(1433869..1434549) 1 NC_008593.1 identified by match to protein family HMM PF04298; hypothetical protein 1434549 4541479 NT01CX_2243 Clostridium novyi NT hypothetical protein YP_878316.1 1433869 R 386415 CDS YP_878317.1 118443626 4541856 complement(1434579..1435508) 1 NC_008593.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1435508 fmt 4541856 fmt Clostridium novyi NT methionyl-tRNA formyltransferase YP_878317.1 1434579 R 386415 CDS YP_878318.1 118443183 4540324 complement(1435513..1435965) 1 NC_008593.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1435965 def 4540324 def Clostridium novyi NT peptide deformylase YP_878318.1 1435513 R 386415 CDS YP_878319.1 118444665 4539664 complement(1435998..1438199) 1 NC_008593.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1438199 4539664 NT01CX_2246 Clostridium novyi NT primosome assembly protein PriA YP_878319.1 1435998 R 386415 CDS YP_878320.1 118443292 4541914 complement(1438252..1439442) 1 NC_008593.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1439442 4541914 NT01CX_2247 Clostridium novyi NT bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_878320.1 1438252 R 386415 CDS YP_878321.1 118443366 4541840 complement(1439444..1439665) 1 NC_008593.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1439665 rpoZ 4541840 rpoZ Clostridium novyi NT DNA-directed RNA polymerase subunit omega YP_878321.1 1439444 R 386415 CDS YP_878322.1 118443898 4540439 complement(1439646..1440287) 1 NC_008593.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1440287 gmk 4540439 gmk Clostridium novyi NT guanylate kinase YP_878322.1 1439646 R 386415 CDS YP_878323.1 118444207 4539683 complement(1440287..1440559) 1 NC_008593.1 identified by match to protein family HMM PF04025; hypothetical protein 1440559 4539683 NT01CX_2250 Clostridium novyi NT hypothetical protein YP_878323.1 1440287 R 386415 CDS YP_878324.1 118443800 4541140 complement(1440577..1441458) 1 NC_008593.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 1441458 4541140 NT01CX_2251 Clostridium novyi NT hypothetical protein YP_878324.1 1440577 R 386415 CDS YP_878325.1 118444346 4540569 complement(1441686..1443053) 1 NC_008593.1 identified by match to protein family HMM PF00860; xanthine/uracil permease family protein 1443053 4540569 NT01CX_2252 Clostridium novyi NT xanthine/uracil permease family protein YP_878325.1 1441686 R 386415 CDS YP_878326.1 118443650 4539764 complement(1443375..1444853) 1 NC_008593.1 stage IV sporulation protein A 1444853 4539764 NT01CX_2253 Clostridium novyi NT stage IV sporulation protein A YP_878326.1 1443375 R 386415 CDS YP_878327.1 118443488 4540199 complement(1445100..1446416) 1 NC_008593.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1446416 engA 4540199 engA Clostridium novyi NT GTP-binding protein EngA YP_878327.1 1445100 R 386415 CDS YP_878328.1 118443177 4540318 complement(1446419..1447759) 1 NC_008593.1 identified by match to protein family HMM PF04459; Fe-S oxidoreductase 1447759 4540318 NT01CX_2255 Clostridium novyi NT Fe-S oxidoreductase YP_878328.1 1446419 R 386415 CDS YP_878329.1 118443591 4541886 complement(1447877..1448596) 1 NC_008593.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1448596 4541886 NT01CX_2256 Clostridium novyi NT hypothetical protein YP_878329.1 1447877 R 386415 CDS YP_878330.1 118444160 4540830 complement(1448704..1449180) 1 NC_008593.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator 1449180 nrdR 4540830 nrdR Clostridium novyi NT NrdR family transcriptional regulator YP_878330.1 1448704 R 386415 CDS YP_878331.1 118444445 4540147 complement(1449244..1449501) 1 NC_008593.1 identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 1449501 4540147 NT01CX_2258 Clostridium novyi NT PRC-barrel domain-containing protein YP_878331.1 1449244 R 386415 CDS YP_878332.1 118444478 4539957 1449724..1451463 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; hydrogenase 1451463 4539957 NT01CX_2259 Clostridium novyi NT hydrogenase YP_878332.1 1449724 D 386415 CDS YP_878333.1 118442904 4540910 1451646..1452809 1 NC_008593.1 identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein 1452809 4540910 NT01CX_2260 Clostridium novyi NT proton/sodium-glutamate symport protein YP_878333.1 1451646 D 386415 CDS YP_878334.1 118443097 4541757 complement(1452865..1453635) 1 NC_008593.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1453635 4541757 NT01CX_2261 Clostridium novyi NT sporulation sigma factor SigG YP_878334.1 1452865 R 386415 CDS YP_878335.2 162139704 4541366 complement(1453709..1454416) 1 NC_008593.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1454416 4541366 NT01CX_2262 Clostridium novyi NT sporulation sigma factor SigE YP_878335.2 1453709 R 386415 CDS YP_878336.1 118443943 4540280 complement(1454431..1455225) 1 NC_008593.1 identified by match to protein family HMM PF03419; sporulation factor SpoIIGA 1455225 4540280 NT01CX_2263 Clostridium novyi NT sporulation factor SpoIIGA YP_878336.1 1454431 R 386415 CDS YP_878337.1 118444552 4540392 complement(1455380..1456564) 1 NC_008593.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1456564 ftsZ 4540392 ftsZ Clostridium novyi NT cell division protein FtsZ YP_878337.1 1455380 R 386415 CDS YP_878338.1 118443934 4540272 complement(1456580..1457833) 1 NC_008593.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 1457833 ftsA 4540272 ftsA Clostridium novyi NT cell division protein FtsA YP_878338.1 1456580 R 386415 CDS YP_878339.1 118444456 4540056 complement(1458087..1459142) 1 NC_008593.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; pili retraction protein, pilT 1459142 4540056 NT01CX_2266 Clostridium novyi NT pili retraction protein, pilT YP_878339.1 1458087 R 386415 CDS YP_878340.1 118442872 4541995 complement(1459253..1459930) 1 NC_008593.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 1459930 4541995 NT01CX_2267 Clostridium novyi NT sporulation sigma factor SigK YP_878340.1 1459253 R 386415 CDS YP_878341.1 118443374 4541847 complement(1460024..1461709) 1 NC_008593.1 identified by match to protein family HMM PF00905; penicillin-binding protein 2 1461709 4541847 NT01CX_2268 Clostridium novyi NT penicillin-binding protein 2 YP_878341.1 1460024 R 386415 CDS YP_878342.1 118443621 4541853 complement(1461771..1462397) 1 NC_008593.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1462397 4541853 NT01CX_2269 Clostridium novyi NT uridine kinase YP_878342.1 1461771 R 386415 CDS YP_878343.1 118444576 4540119 complement(1462401..1463627) 1 NC_008593.1 identified by match to protein family HMM PF01136; U32 family peptidase 1463627 4540119 NT01CX_2270 Clostridium novyi NT U32 family peptidase YP_878343.1 1462401 R 386415 CDS YP_878344.1 118442901 4541983 complement(1463620..1464276) 1 NC_008593.1 identified by match to protein family HMM PF01596; O-methyltransferase family 1464276 4541983 NT01CX_2271 Clostridium novyi NT O-methyltransferase family YP_878344.1 1463620 R 386415 CDS YP_878345.1 118443200 4541488 complement(1464307..1465317) 1 NC_008593.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 1465317 4541488 NT01CX_2272 Clostridium novyi NT hypothetical protein YP_878345.1 1464307 R 386415 CDS YP_878346.1 118443958 4540751 complement(1465359..1467179) 1 NC_008593.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 1467179 typA 4540751 typA Clostridium novyi NT GTP-binding protein TypA YP_878346.1 1465359 R 386415 CDS YP_878347.1 118444502 4539920 complement(1467321..1467665) 1 NC_008593.1 identified by match to protein family HMM PF06133; hypothetical protein 1467665 4539920 NT01CX_2274 Clostridium novyi NT hypothetical protein YP_878347.1 1467321 R 386415 CDS YP_878348.1 118443342 4539856 complement(1467690..1469357) 1 NC_008593.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily hydrolase 1469357 4539856 NT01CX_2275 Clostridium novyi NT metallo-beta-lactamase superfamily hydrolase YP_878348.1 1467690 R 386415 CDS YP_878349.1 118444023 4540655 complement(1469396..1469848) 1 NC_008593.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 1469848 4540655 NT01CX_2276 Clostridium novyi NT ferric uptake regulation protein YP_878349.1 1469396 R 386415 CDS YP_878350.1 118444646 4539780 complement(1470002..1470262) 1 NC_008593.1 identified by match to protein family HMM PF06949; hypothetical protein 1470262 4539780 NT01CX_2277 Clostridium novyi NT hypothetical protein YP_878350.1 1470002 R 386415 CDS YP_878351.1 118442957 4539725 complement(1470286..1470693) 1 NC_008593.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1470693 4539725 NT01CX_2278 Clostridium novyi NT Holliday junction resolvase-like protein YP_878351.1 1470286 R 386415 CDS YP_878352.1 118443315 4540618 complement(1470751..1471005) 1 NC_008593.1 hypothetical protein 1471005 4540618 NT01CX_2279 Clostridium novyi NT hypothetical protein YP_878352.1 1470751 R 386415 CDS YP_878353.1 118444620 4539587 complement(1471092..1473731) 1 NC_008593.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1473731 alaS 4539587 alaS Clostridium novyi NT alanyl-tRNA synthetase YP_878353.1 1471092 R 386415 CDS YP_878354.1 118444647 4539781 complement(1474145..1475197) 1 NC_008593.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 1475197 trmU 4539781 trmU Clostridium novyi NT tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_878354.1 1474145 R 386415 CDS YP_878355.1 118443577 4541875 complement(1475210..1475638) 1 NC_008593.1 identified by match to protein family HMM PF01592; NifU protein 1475638 4541875 NT01CX_2282 Clostridium novyi NT NifU protein YP_878355.1 1475210 R 386415 CDS YP_878356.1 118443052 4541776 complement(1475641..1476831) 1 NC_008593.1 identified by match to protein family HMM PF00266; cysteine desulfurase 1476831 4541776 NT01CX_2283 Clostridium novyi NT cysteine desulfurase YP_878356.1 1475641 R 386415 CDS YP_878357.1 118444398 4541258 complement(1476824..1477258) 1 NC_008593.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; iron-sulfur cluster assembly transcription factor IscR 1477258 4541258 NT01CX_2284 Clostridium novyi NT iron-sulfur cluster assembly transcription factor IscR YP_878357.1 1476824 R 386415 CDS YP_878358.1 118444607 4540105 complement(1477341..1478600) 1 NC_008593.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1478600 4540105 NT01CX_2285 Clostridium novyi NT recombination factor protein RarA YP_878358.1 1477341 R 386415 CDS YP_878359.1 118443006 4540583 complement(1478741..1479973) 1 NC_008593.1 identified by match to protein family HMM PF00563; EAL domain-containing protein 1479973 4540583 NT01CX_2286 Clostridium novyi NT EAL domain-containing protein YP_878359.1 1478741 R 386415 CDS YP_878360.1 118443534 4541933 complement(1480077..1480739) 1 NC_008593.1 identified by match to protein family HMM PF00753; zinc-dependent hydrolase 1480739 4541933 NT01CX_2287 Clostridium novyi NT zinc-dependent hydrolase YP_878360.1 1480077 R 386415 CDS YP_878361.1 118443816 4540816 complement(1480758..1482665) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1482665 4540816 NT01CX_2288 Clostridium novyi NT ABC transporter ATP-binding protein YP_878361.1 1480758 R 386415 CDS YP_878362.1 118443802 4541142 complement(1482727..1484982) 1 NC_008593.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase III 1484982 traI 4541142 traI Clostridium novyi NT DNA topoisomerase III YP_878362.1 1482727 R 386415 CDS YP_878363.1 118443953 4540747 1485081..1485818 1 NC_008593.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1485818 truA 4540747 truA Clostridium novyi NT tRNA pseudouridine synthase A YP_878363.1 1485081 D 386415 CDS YP_878364.1 118444067 4541198 complement(1485954..1487483) 1 NC_008593.1 identified by match to protein family HMM PF00015; chemotaxis sensory transducer protein 1487483 4541198 NT01CX_2291 Clostridium novyi NT chemotaxis sensory transducer protein YP_878364.1 1485954 R 386415 CDS YP_878365.1 118443760 4541035 complement(1487498..1488523) 1 NC_008593.1 3-oxoacyl-(acyl-carrier-protein) synthase III 1488523 4541035 NT01CX_2292 Clostridium novyi NT 3-oxoacyl-(acyl-carrier-protein) synthase III YP_878365.1 1487498 R 386415 CDS YP_878366.1 118443136 4541748 complement(1488754..1488996) 1 NC_008593.1 identified by match to protein family HMM PF01541; endo/excinuclease domain-containing protein 1488996 4541748 NT01CX_2293 Clostridium novyi NT endo/excinuclease domain-containing protein YP_878366.1 1488754 R 386415 CDS YP_878367.1 118444389 4541250 complement(1489007..1489411) 1 NC_008593.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1489411 4541250 NT01CX_2294 Clostridium novyi NT MutT/nudix family protein YP_878367.1 1489007 R 386415 CDS YP_878368.1 118442993 4541088 complement(1490122..1490328) 1 NC_008593.1 identified by match to protein family HMM PF01381; Cro/CI family transcription regulator 1490328 4541088 NT01CX_2295 Clostridium novyi NT Cro/CI family transcription regulator YP_878368.1 1490122 R 386415 CDS YP_878369.1 118443166 4540309 complement(1490345..1490839) 1 NC_008593.1 hypothetical protein 1490839 4540309 NT01CX_2296 Clostridium novyi NT hypothetical protein YP_878369.1 1490345 R 386415 CDS YP_878370.1 118444544 4540387 complement(1490891..1492339) 1 NC_008593.1 hypothetical protein 1492339 4540387 NT01CX_2297 Clostridium novyi NT hypothetical protein YP_878370.1 1490891 R 386415 CDS YP_878371.1 118444257 4541636 complement(1492548..1492886) 1 NC_008593.1 identified by match to protein family HMM PF03960; arsenate reductase 1492886 4541636 NT01CX_2298 Clostridium novyi NT arsenate reductase YP_878371.1 1492548 R 386415 CDS YP_878372.1 118443730 4540515 1493114..1493956 1 NC_008593.1 identified by match to protein family HMM PF00892; integral membrane protein 1493956 4540515 NT01CX_2299 Clostridium novyi NT integral membrane protein YP_878372.1 1493114 D 386415 CDS YP_878373.1 118444313 4540798 complement(1494018..1494434) 1 NC_008593.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 1494434 mscL 4540798 mscL Clostridium novyi NT large conductance mechanosensitive channel protein YP_878373.1 1494018 R 386415 CDS YP_878374.1 118443072 4541793 complement(1494554..1497154) 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; clpB protein 1497154 clpB 4541793 clpB Clostridium novyi NT clpB protein YP_878374.1 1494554 R 386415 CDS YP_878375.1 118444315 4540799 complement(1497297..1499735) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase 1499735 4540799 NT01CX_2302 Clostridium novyi NT ATP-dependent DNA helicase YP_878375.1 1497297 R 386415 CDS YP_878376.1 118443069 4541790 complement(1499838..1500608) 1 NC_008593.1 identified by match to protein family HMM PF00520; potassium transporter 1500608 4541790 NT01CX_2303 Clostridium novyi NT potassium transporter YP_878376.1 1499838 R 386415 CDS YP_878377.1 118443485 4540196 complement(1500766..1501098) 1 NC_008593.1 thioredoxin 1501098 4540196 NT01CX_2304 Clostridium novyi NT thioredoxin YP_878377.1 1500766 R 386415 CDS YP_878378.1 118444136 4540985 complement(1501129..1501815) 1 NC_008593.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1501815 4540985 NT01CX_2305 Clostridium novyi NT hemolysin III YP_878378.1 1501129 R 386415 CDS YP_878379.1 118444580 4540123 1502117..1502719 1 NC_008593.1 hypothetical protein 1502719 4540123 NT01CX_2306 Clostridium novyi NT hypothetical protein YP_878379.1 1502117 D 386415 CDS YP_878380.1 118443307 4541925 complement(1502759..1504879) 1 NC_008593.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07670; ferrous iron transport protein B 1504879 4541925 NT01CX_2307 Clostridium novyi NT ferrous iron transport protein B YP_878380.1 1502759 R 386415 CDS YP_878381.1 118443849 4540863 complement(1504908..1505156) 1 NC_008593.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 1505156 4540863 NT01CX_2308 Clostridium novyi NT ferrous iron transport protein A YP_878381.1 1504908 R 386415 CDS YP_878382.1 118444274 4541652 1505364..1505783 1 NC_008593.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent transcriptional repressor 1505783 4541652 NT01CX_2309 Clostridium novyi NT iron-dependent transcriptional repressor YP_878382.1 1505364 D 386415 CDS YP_878383.1 118443365 4541839 complement(1505851..1507389) 1 NC_008593.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 1507389 4541839 NT01CX_2310 Clostridium novyi NT metallo-beta-lactamase family protein YP_878383.1 1505851 R 386415 CDS YP_878384.1 118444621 4539588 complement(1507558..1508631) 1 NC_008593.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1508631 murG 4539588 murG Clostridium novyi NT undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_878384.1 1507558 R 386415 CDS YP_878385.1 118443010 4540585 1508887..1509084 1 NC_008593.1 identified by match to protein family HMM PF00269; small acid-soluble spore protein -like protein 1509084 4540585 NT01CX_2312 Clostridium novyi NT small acid-soluble spore protein -like protein YP_878385.1 1508887 D 386415 CDS YP_878386.1 118444125 4540976 complement(1509192..1510532) 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1510532 4540976 NT01CX_2313 Clostridium novyi NT MATE efflux family protein YP_878386.1 1509192 R 386415 CDS YP_878387.1 118443827 4540824 1510738..1510929 1 NC_008593.1 identified by match to protein family HMM PF00269; small acid-soluble spore protein-like protein 1510929 4540824 NT01CX_2314 Clostridium novyi NT small acid-soluble spore protein-like protein YP_878387.1 1510738 D 386415 CDS YP_878388.1 118443557 4539881 complement(1511005..1512966) 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory transduction histidine kinase 1512966 4539881 NT01CX_2315 Clostridium novyi NT sensory transduction histidine kinase YP_878388.1 1511005 R 386415 CDS YP_878389.1 118444341 4540564 complement(1513107..1514873) 1 NC_008593.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1514873 recJ 4540564 recJ Clostridium novyi NT single-stranded-DNA-specific exonuclease RecJ YP_878389.1 1513107 R 386415 CDS YP_878390.1 118443842 4540857 1514953..1515771 1 NC_008593.1 identified by match to protein family HMM PF01261; endonuclease IV 1515771 4540857 NT01CX_2317 Clostridium novyi NT endonuclease IV YP_878390.1 1514953 D 386415 CDS YP_878391.1 118443759 4541034 1515808..1516413 1 NC_008593.1 identified by match to protein family HMM PF01613; flavin reductase domain-containing protein 1516413 4541034 NT01CX_2318 Clostridium novyi NT flavin reductase domain-containing protein YP_878391.1 1515808 D 386415 CDS YP_878392.1 118443254 4540340 complement(1516508..1516720) 1 NC_008593.1 identified by match to protein family HMM PF00403; copper ion binding protein 1516720 4540340 NT01CX_2319 Clostridium novyi NT copper ion binding protein YP_878392.1 1516508 R 386415 CDS YP_878393.1 118444416 4541217 complement(1516759..1519206) 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1519206 4541217 NT01CX_2320 Clostridium novyi NT copper-translocating P-type ATPase YP_878393.1 1516759 R 386415 CDS YP_878394.1 118443985 4540374 complement(1519348..1520565) 1 NC_008593.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; zinc protease 1520565 4540374 NT01CX_2321 Clostridium novyi NT zinc protease YP_878394.1 1519348 R 386415 CDS YP_878395.1 118444392 4541253 complement(1520721..1521728) 1 NC_008593.1 identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha 1521728 etfA 4541253 etfA Clostridium novyi NT electron transfer flavoprotein subunit alpha YP_878395.1 1520721 R 386415 CDS YP_878396.1 118443969 4540760 complement(1521759..1522538) 1 NC_008593.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1522538 4540760 NT01CX_2323 Clostridium novyi NT electron transfer flavoprotein subunit beta YP_878396.1 1521759 R 386415 CDS YP_878397.1 118443327 4540628 complement(1522566..1523705) 1 NC_008593.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; (3-hydroxy)butyryl-CoA dehydrogenase 1523705 4540628 NT01CX_2324 Clostridium novyi NT (3-hydroxy)butyryl-CoA dehydrogenase YP_878397.1 1522566 R 386415 CDS YP_878398.1 118442946 4539616 complement(1523955..1526867) 1 NC_008593.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1526867 4539616 NT01CX_2325 Clostridium novyi NT DNA topoisomerase IV subunit A YP_878398.1 1523955 R 386415 CDS YP_878399.1 118444670 4539669 complement(1526907..1528865) 1 NC_008593.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1528865 4539669 NT01CX_2326 Clostridium novyi NT DNA topoisomerase IV subunit B YP_878399.1 1526907 R 386415 CDS YP_878400.1 118444258 4541637 complement(1529060..1529443) 1 NC_008593.1 hypothetical protein 1529443 4541637 NT01CX_2327 Clostridium novyi NT hypothetical protein YP_878400.1 1529060 R 386415 CDS YP_878401.1 118443609 4539985 complement(1529518..1530456) 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 1530456 4539985 NT01CX_2328 Clostridium novyi NT hypothetical protein YP_878401.1 1529518 R 386415 CDS YP_878402.1 118443089 4541807 complement(1530532..1531233) 1 NC_008593.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107; purine nucleoside phosphorylase 1531233 deoD 4541807 deoD Clostridium novyi NT purine nucleoside phosphorylase YP_878402.1 1530532 R 386415 CDS YP_878403.1 118443706 4540243 complement(1531640..1533373) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1533373 4540243 NT01CX_2330 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878403.1 1531640 R 386415 CDS YP_878404.1 118443131 4541744 1533669..1535093 1 NC_008593.1 ISBma2, transposase 1535093 4541744 NT01CX_2331 Clostridium novyi NT ISBma2, transposase YP_878404.1 1533669 D 386415 CDS YP_878405.1 118443428 4541950 complement(1535192..1535404) 1 NC_008593.1 hypothetical protein 1535404 4541950 NT01CX_2332 Clostridium novyi NT hypothetical protein YP_878405.1 1535192 R 386415 CDS YP_878406.1 118442855 4542005 complement(1535649..1536824) 1 NC_008593.1 identified by match to protein family HMM PF02353; cyclopropane fatty acid synthase family protein 1536824 4542005 NT01CX_2333 Clostridium novyi NT cyclopropane fatty acid synthase family protein YP_878406.1 1535649 R 386415 CDS YP_878407.1 118444482 4539961 complement(1536921..1537541) 1 NC_008593.1 identified by match to protein family HMM PF00005; nitrate ABC transporter ATP-binding protein 1537541 4539961 NT01CX_2334 Clostridium novyi NT nitrate ABC transporter ATP-binding protein YP_878407.1 1536921 R 386415 CDS YP_878408.1 118443973 4540365 complement(1537534..1538295) 1 NC_008593.1 identified by match to protein family HMM PF00528; taurine ABC transporter permease 1538295 4540365 NT01CX_2335 Clostridium novyi NT taurine ABC transporter permease YP_878408.1 1537534 R 386415 CDS YP_878409.1 118443148 4541700 complement(1538267..1539262) 1 NC_008593.1 lipoprotein 1539262 4541700 NT01CX_2336 Clostridium novyi NT lipoprotein YP_878409.1 1538267 R 386415 CDS YP_878410.1 118444624 4539591 complement(1539418..1539846) 1 NC_008593.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1539846 4539591 NT01CX_2337 Clostridium novyi NT flavodoxin YP_878410.1 1539418 R 386415 CDS YP_878411.1 118444014 4540647 complement(1540036..1540941) 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1540941 4540647 NT01CX_2338 Clostridium novyi NT chemotaxis protein CheV YP_878411.1 1540036 R 386415 CDS YP_878412.1 118443601 4539978 complement(1541119..1541709) 1 NC_008593.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1541709 rpsD 4539978 rpsD Clostridium novyi NT 30S ribosomal protein S4 YP_878412.1 1541119 R 386415 CDS YP_878413.1 118443841 4540856 complement(1541889..1543658) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1543658 4540856 NT01CX_2340 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878413.1 1541889 R 386415 CDS YP_878414.1 118444378 4541242 complement(1543825..1544496) 1 NC_008593.1 identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 1544496 4541242 NT01CX_2341 Clostridium novyi NT pyrazinamidase/nicotinamidase YP_878414.1 1543825 R 386415 CDS YP_878415.1 118443801 4541141 complement(1544581..1545531) 1 NC_008593.1 hypothetical protein 1545531 4541141 NT01CX_2342 Clostridium novyi NT hypothetical protein YP_878415.1 1544581 R 386415 CDS YP_878416.1 118444358 4540446 complement(1545645..1547996) 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 1547996 4540446 NT01CX_2343 Clostridium novyi NT cation transporter E1-E2 family ATPase YP_878416.1 1545645 R 386415 CDS YP_878417.1 118443209 4539627 complement(1548071..1548964) 1 NC_008593.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1548964 4539627 NT01CX_2344 Clostridium novyi NT LysR family transcriptional regulator YP_878417.1 1548071 R 386415 CDS YP_878418.1 118443784 4541128 1549097..1550101 1 NC_008593.1 identified by match to protein family HMM PF03601; hypothetical protein 1550101 4541128 NT01CX_2345 Clostridium novyi NT hypothetical protein YP_878418.1 1549097 D 386415 CDS YP_878419.1 118444054 4541190 complement(1550197..1551570) 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; Na+ driven multidrug efflux pump 1551570 4541190 NT01CX_2346 Clostridium novyi NT Na+ driven multidrug efflux pump YP_878419.1 1550197 R 386415 CDS YP_878420.1 118443039 4539657 complement(1551752..1554637) 1 NC_008593.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 1554637 4539657 NT01CX_2347 Clostridium novyi NT diguanylate cyclase/phosphodiesterase YP_878420.1 1551752 R 386415 CDS YP_878421.1 118443481 4540192 complement(1554651..1557113) 1 NC_008593.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box/GGDEF family protein 1557113 4540192 NT01CX_2348 Clostridium novyi NT sensory box/GGDEF family protein YP_878421.1 1554651 R 386415 CDS YP_878422.1 118443894 4540435 1557600..1558919 1 NC_008593.1 identified by match to protein family HMM PF00209; sodium- and chloride-dependent transporter 1558919 4540435 NT01CX_2349 Clostridium novyi NT sodium- and chloride-dependent transporter YP_878422.1 1557600 D 386415 CDS YP_878423.1 118443213 4539630 complement(1559075..1560682) 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1560682 4539630 NT01CX_2350 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878423.1 1559075 R 386415 CDS YP_878424.1 118444365 4540452 complement(1560933..1561940) 1 NC_008593.1 identified by match to protein family HMM PF06207; hypothetical protein 1561940 4540452 NT01CX_2351 Clostridium novyi NT hypothetical protein YP_878424.1 1560933 R 386415 CDS YP_878425.1 118443408 4541719 complement(1562046..1562591) 1 NC_008593.1 identified by match to protein family HMM PF03358; hypothetical protein 1562591 4541719 NT01CX_2352 Clostridium novyi NT hypothetical protein YP_878425.1 1562046 R 386415 CDS YP_878426.1 118442892 4541975 complement(1562717..1563748) 1 NC_008593.1 hypothetical protein 1563748 4541975 NT01CX_2353 Clostridium novyi NT hypothetical protein YP_878426.1 1562717 R 386415 CDS YP_878427.1 118444408 4541210 complement(1563907..1565334) 1 NC_008593.1 identified by match to protein family HMM PF00324; lysine-specific permease 1565334 4541210 NT01CX_2354 Clostridium novyi NT lysine-specific permease YP_878427.1 1563907 R 386415 CDS YP_878428.1 118444590 4540092 complement(1565752..1566867) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 1566867 4540092 NT01CX_2355 Clostridium novyi NT ATP-dependent RNA helicase YP_878428.1 1565752 R 386415 CDS YP_878429.1 118443638 4541866 1567223..1567420 1 NC_008593.1 identified by match to protein family HMM PF00313; cold shock protein -like protein 1567420 4541866 NT01CX_2356 Clostridium novyi NT cold shock protein -like protein YP_878429.1 1567223 D 386415 CDS YP_878430.1 118443109 4541766 complement(1567461..1567910) 1 NC_008593.1 identified by match to protein family HMM PF04892; acetobutylicum phosphotransbutyrylase 1567910 4541766 NT01CX_2357 Clostridium novyi NT acetobutylicum phosphotransbutyrylase YP_878430.1 1567461 R 386415 CDS YP_878431.1 118444485 4539964 complement(1568055..1568657) 1 NC_008593.1 hypothetical protein 1568657 4539964 NT01CX_2358 Clostridium novyi NT hypothetical protein YP_878431.1 1568055 R 386415 CDS YP_878432.1 118443836 4540852 complement(1568798..1569349) 1 NC_008593.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 1569349 4540852 NT01CX_2359 Clostridium novyi NT co-chaperone GrpE YP_878432.1 1568798 R 386415 CDS YP_878433.1 118444705 4540224 complement(1569422..1570357) 1 NC_008593.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1570357 4540224 NT01CX_2360 Clostridium novyi NT ribonuclease Z YP_878433.1 1569422 R 386415 CDS YP_878434.1 118442880 4541964 1570640..1571185 1 NC_008593.1 hypothetical protein 1571185 4541964 NT01CX_2361 Clostridium novyi NT hypothetical protein YP_878434.1 1570640 D 386415 CDS YP_878435.1 118443143 4541695 complement(1571245..1571736) 1 NC_008593.1 hypothetical protein 1571736 4541695 NT01CX_2362 Clostridium novyi NT hypothetical protein YP_878435.1 1571245 R 386415 CDS YP_878436.1 118443401 4541714 1571872..1572966 1 NC_008593.1 hypothetical protein 1572966 4541714 NT01CX_2363 Clostridium novyi NT hypothetical protein YP_878436.1 1571872 D 386415 CDS YP_878437.1 118443674 4541003 complement(1572501..1572722) 1 NC_008593.1 hypothetical protein 1572722 4541003 NT01CX_2364 Clostridium novyi NT hypothetical protein YP_878437.1 1572501 R 386415 CDS YP_878438.1 118443949 4540285 complement(1573023..1574051) 1 NC_008593.1 identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase subunit beta 1574051 4540285 NT01CX_2365 Clostridium novyi NT ribonucleoside-diphosphate reductase subunit beta YP_878438.1 1573023 R 386415 CDS YP_878439.1 118442856 4541984 complement(1574067..1576361) 1 NC_008593.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1576361 nrdA 4541984 nrdA Clostridium novyi NT ribonucleotide-diphosphate reductase subunit alpha YP_878439.1 1574067 R 386415 CDS YP_878440.1 118443375 4541848 complement(1576572..1578092) 1 NC_008593.1 hypothetical protein 1578092 4541848 NT01CX_2367 Clostridium novyi NT hypothetical protein YP_878440.1 1576572 R 386415 CDS YP_878441.1 118444181 4540846 complement(1578290..1579405) 1 NC_008593.1 identified by match to protein family HMM PF06050; R-phenyllactate dehydratase small subunit 1579405 hgdB 4540846 hgdB Clostridium novyi NT R-phenyllactate dehydratase small subunit YP_878441.1 1578290 R 386415 CDS YP_878442.1 118444701 4540220 complement(1579398..1580669) 1 NC_008593.1 identified by match to protein family HMM PF06050; R-phenyllactate dehydratase medium subunit 1580669 hgdA 4540220 hgdA Clostridium novyi NT R-phenyllactate dehydratase medium subunit YP_878442.1 1579398 R 386415 CDS YP_878443.1 118444388 4541249 complement(1580688..1581473) 1 NC_008593.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; R-phenyllactate dehydratase activator 1581473 hgdC 4541249 hgdC Clostridium novyi NT R-phenyllactate dehydratase activator YP_878443.1 1580688 R 386415 CDS YP_878444.1 118443826 4540823 complement(1581505..1581918) 1 NC_008593.1 identified by match to protein family HMM PF00903; 4-hydroxyphenylpyruvate dioxygenase 1581918 4540823 NT01CX_2371 Clostridium novyi NT 4-hydroxyphenylpyruvate dioxygenase YP_878444.1 1581505 R 386415 CDS YP_878445.1 118444712 4541513 complement(1582002..1583555) 1 NC_008593.1 identified by match to protein family HMM PF01144; acetyl-CoA-transferase subunit 1583555 4541513 NT01CX_2372 Clostridium novyi NT acetyl-CoA-transferase subunit YP_878445.1 1582002 R 386415 CDS YP_878446.1 118443399 4541712 complement(1584037..1584303) 1 NC_008593.1 hypothetical protein 1584303 4541712 NT01CX_2373 Clostridium novyi NT hypothetical protein YP_878446.1 1584037 R 386415 CDS YP_878447.1 118443670 4541000 1584587..1585522 1 NC_008593.1 identified by match to protein family HMM PF00070; thioredoxin reductase 1585522 4541000 NT01CX_2374 Clostridium novyi NT thioredoxin reductase YP_878447.1 1584587 D 386415 CDS YP_878448.1 118443116 4541731 1585529..1585756 1 NC_008593.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; glutaredoxin 1585756 4541731 NT01CX_2375 Clostridium novyi NT glutaredoxin YP_878448.1 1585529 D 386415 CDS YP_878449.1 118443923 4541506 1585777..1586322 1 NC_008593.1 identified by match to protein family HMM PF00255; glutathione peroxidase 1586322 4541506 NT01CX_2376 Clostridium novyi NT glutathione peroxidase YP_878449.1 1585777 D 386415 CDS YP_878450.1 118443629 4541858 complement(1586359..1587372) 1 NC_008593.1 S-layer protein 1587372 4541858 NT01CX_2377 Clostridium novyi NT S-layer protein YP_878450.1 1586359 R 386415 CDS YP_878451.1 118442916 4540919 complement(1587551..1588768) 1 NC_008593.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1588768 argJ 4540919 argJ Clostridium novyi NT bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_878451.1 1587551 R 386415 CDS YP_878452.1 118444467 4540066 complement(1588793..1589830) 1 NC_008593.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1589830 argC 4540066 argC Clostridium novyi NT N-acetyl-gamma-glutamyl-phosphate reductase YP_878452.1 1588793 R 386415 CDS YP_878453.1 118444513 4539929 1589976..1590830 1 NC_008593.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 1590830 argB 4539929 argB Clostridium novyi NT acetylglutamate kinase YP_878453.1 1589976 D 386415 CDS YP_878454.1 118444208 4539684 1590812..1591978 1 NC_008593.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 1591978 argD 4539684 argD Clostridium novyi NT acetylornithine aminotransferase YP_878454.1 1590812 D 386415 CDS YP_878455.1 118443241 4540331 1592192..1593190 1 NC_008593.1 identified by match to protein family HMM PF06050; chain of benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase 1593190 hgdB 4540331 hgdB Clostridium novyi NT chain of benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase YP_878455.1 1592192 D 386415 CDS YP_878456.1 118444638 4539601 1593191..1593949 1 NC_008593.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 1593949 4539601 NT01CX_2383 Clostridium novyi NT 2-hydroxyglutaryl-CoA dehydratase YP_878456.1 1593191 D 386415 CDS YP_878457.1 118444353 4540575 1593964..1594383 1 NC_008593.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 1594383 4540575 NT01CX_2384 Clostridium novyi NT 6-pyruvoyl tetrahydrobiopterin synthase YP_878457.1 1593964 D 386415 CDS YP_878458.1 118443804 4541144 1594394..1595062 1 NC_008593.1 identified by match to protein family HMM PF04055; MoaA family Fe-S oxidoreductase 1595062 4541144 NT01CX_2385 Clostridium novyi NT MoaA family Fe-S oxidoreductase YP_878458.1 1594394 D 386415 CDS YP_878459.1 118442853 4542003 1595066..1595731 1 NC_008593.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 1595731 4542003 NT01CX_2386 Clostridium novyi NT exsB protein YP_878459.1 1595066 D 386415 CDS YP_878460.1 118444468 4540067 complement(1595865..1596662) 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 1596662 4540067 NT01CX_2387 Clostridium novyi NT HAD superfamily hydrolase YP_878460.1 1595865 R 386415 CDS YP_878461.1 118443932 4540270 complement(1596751..1597467) 1 NC_008593.1 membrane-spanning protein 1597467 4540270 NT01CX_2388 Clostridium novyi NT membrane-spanning protein YP_878461.1 1596751 R 386415 CDS YP_878462.1 118443663 4539775 complement(1597468..1598511) 1 NC_008593.1 identified by match to protein family HMM PF03773; permease family protein 1598511 4539775 NT01CX_2389 Clostridium novyi NT permease family protein YP_878462.1 1597468 R 386415 CDS YP_878463.1 118443991 4540378 complement(1598522..1599163) 1 NC_008593.1 cobalamin synthesis protein 1599163 4540378 NT01CX_2390 Clostridium novyi NT cobalamin synthesis protein YP_878463.1 1598522 R 386415 CDS YP_878464.1 118444393 4541254 complement(1599176..1600129) 1 NC_008593.1 identified by match to protein family HMM PF02492; cobalamin synthesis protein 1600129 4541254 NT01CX_2391 Clostridium novyi NT cobalamin synthesis protein YP_878464.1 1599176 R 386415 CDS YP_878465.1 118443169 4540312 complement(1600661..1601239) 1 NC_008593.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 1601239 4540312 NT01CX_2392 Clostridium novyi NT diguanylate cyclase/phosphodiesterase YP_878465.1 1600661 R 386415 CDS YP_878466.1 118443578 4541876 complement(1601315..1601581) 1 NC_008593.1 hypothetical protein 1601581 4541876 NT01CX_2393 Clostridium novyi NT hypothetical protein YP_878466.1 1601315 R 386415 CDS YP_878467.1 118443982 4540371 complement(1601806..1601940) 1 NC_008593.1 hypothetical protein 1601940 4540371 NT01CX_2394 Clostridium novyi NT hypothetical protein YP_878467.1 1601806 R 386415 CDS YP_878468.1 118444616 4539585 1602253..1602873 1 NC_008593.1 hypothetical protein 1602873 4539585 NT01CX_2395 Clostridium novyi NT hypothetical protein YP_878468.1 1602253 D 386415 CDS YP_878469.1 118443135 4541747 complement(1602983..1605019) 1 NC_008593.1 identified by match to protein family HMM PF03190; thymidylate kinase 1605019 4541747 NT01CX_2396 Clostridium novyi NT thymidylate kinase YP_878469.1 1602983 R 386415 CDS YP_878470.1 118443773 4541046 complement(1605165..1606496) 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1606496 4541046 NT01CX_2397 Clostridium novyi NT MATE efflux family protein YP_878470.1 1605165 R 386415 CDS YP_878471.1 118444173 4540839 complement(1606693..1607946) 1 NC_008593.1 identified by match to protein family HMM PF01676; match to protein family HMM TIGR00306; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1607946 apgM 4540839 apgM Clostridium novyi NT 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_878471.1 1606693 R 386415 CDS YP_878472.1 118443857 4541673 complement(1607993..1608712) 1 NC_008593.1 hypothetical protein 1608712 4541673 NT01CX_2399 Clostridium novyi NT hypothetical protein YP_878472.1 1607993 R 386415 CDS YP_878473.1 118443259 4541053 complement(1608726..1610192) 1 NC_008593.1 identified by match to protein family HMM PF00939; anion transporter family protein 1610192 4541053 NT01CX_2400 Clostridium novyi NT anion transporter family protein YP_878473.1 1608726 R 386415 CDS YP_878474.1 118442997 4541092 1610506..1611447 1 NC_008593.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 1611447 4541092 NT01CX_2401 Clostridium novyi NT transcriptional regulator YP_878474.1 1610506 D 386415 CDS YP_878475.1 118443525 4541927 complement(1611555..1612748) 1 NC_008593.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 1612748 4541927 NT01CX_2402 Clostridium novyi NT M20/M25/M40 family peptidase YP_878475.1 1611555 R 386415 CDS YP_878476.1 118444221 4539693 complement(1612758..1613453) 1 NC_008593.1 identified by match to protein family HMM PF01863; zinc metalloprotease 1613453 4539693 NT01CX_2403 Clostridium novyi NT zinc metalloprotease YP_878476.1 1612758 R 386415 CDS YP_878477.1 118444578 4540121 complement(1613450..1614469) 1 NC_008593.1 hypothetical protein 1614469 4540121 NT01CX_2404 Clostridium novyi NT hypothetical protein YP_878477.1 1613450 R 386415 CDS YP_878478.1 118443210 4539628 complement(1614664..1615062) 1 NC_008593.1 transporter 1615062 4539628 NT01CX_2405 Clostridium novyi NT transporter YP_878478.1 1614664 R 386415 CDS YP_878479.1 118443728 4540513 complement(1615284..1618481) 1 NC_008593.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; hypothetical protein 1618481 hsdR 4540513 hsdR Clostridium novyi NT hypothetical protein YP_878479.1 1615284 R 386415 CDS YP_878480.1 118443819 4540819 complement(1618478..1619683) 1 NC_008593.1 identified by match to protein family HMM PF01420; type I restriction-modification system specificity subunit 1619683 4540819 NT01CX_2407 Clostridium novyi NT type I restriction-modification system specificity subunit YP_878480.1 1618478 R 386415 CDS YP_878481.1 118444367 4540454 complement(1619680..1621797) 1 NC_008593.1 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system DNA methylase 1621797 4540454 NT01CX_2408 Clostridium novyi NT type I restriction-modification system DNA methylase YP_878481.1 1619680 R 386415 CDS YP_878482.1 118442996 4541091 complement(1622629..1623201) 1 NC_008593.1 ISBma2, transposase 1623201 4541091 NT01CX_2409 Clostridium novyi NT ISBma2, transposase YP_878482.1 1622629 R 386415 CDS YP_878483.1 118443455 4541894 complement(1623351..1623674) 1 NC_008593.1 hypothetical protein 1623674 4541894 NT01CX_2410 Clostridium novyi NT hypothetical protein YP_878483.1 1623351 R 386415 CDS YP_878484.1 118443892 4540433 complement(1623850..1625823) 1 NC_008593.1 hypothetical protein 1625823 4540433 NT01CX_2411 Clostridium novyi NT hypothetical protein YP_878484.1 1623850 R 386415 CDS YP_878485.1 118444301 4539719 complement(1626178..1627530) 1 NC_008593.1 identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 1627530 rumA 4539719 rumA Clostridium novyi NT 23S rRNA (uracil-5-)-methyltransferase RumA YP_878485.1 1626178 R 386415 CDS YP_878486.1 118444202 4541331 complement(1627556..1627876) 1 NC_008593.1 hypothetical protein 1627876 4541331 NT01CX_2413 Clostridium novyi NT hypothetical protein YP_878486.1 1627556 R 386415 CDS YP_878487.1 118444711 4541512 1628343..1629242 1 NC_008593.1 identified by match to protein family HMM PF00753; zinc metallohydrolase 1629242 4541512 NT01CX_2414 Clostridium novyi NT zinc metallohydrolase YP_878487.1 1628343 D 386415 CDS YP_878488.1 118442972 4541073 complement(1629316..1631382) 1 NC_008593.1 hypothetical protein 1631382 4541073 NT01CX_2415 Clostridium novyi NT hypothetical protein YP_878488.1 1629316 R 386415 CDS YP_878489.1 118443343 4539857 complement(1631438..1632130) 1 NC_008593.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 1632130 4539857 NT01CX_2416 Clostridium novyi NT phosphodiesterase YP_878489.1 1631438 R 386415 CDS YP_878490.1 118444031 4540661 complement(1632388..1633815) 1 NC_008593.1 identified by match to protein family HMM PF00860; guanine-hypoxanthine permease 1633815 4540661 NT01CX_2417 Clostridium novyi NT guanine-hypoxanthine permease YP_878490.1 1632388 R 386415 CDS YP_878491.1 118444451 4540052 complement(1634243..1639237) 1 NC_008593.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02769; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 1639237 4540052 NT01CX_2418 Clostridium novyi NT phosphoribosylformylglycinamidine synthase YP_878491.1 1634243 R 386415 CDS YP_878492.1 118443689 4540229 complement(1639266..1640768) 1 NC_008593.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1640768 purH 4540229 purH Clostridium novyi NT bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_878492.1 1639266 R 386415 CDS YP_878493.1 118443641 4539757 complement(1640795..1641415) 1 NC_008593.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1641415 purN 4539757 purN Clostridium novyi NT phosphoribosylglycinamide formyltransferase YP_878493.1 1640795 R 386415 CDS YP_878494.1 118444044 4540669 complement(1641403..1642398) 1 NC_008593.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1642398 purM 4540669 purM Clostridium novyi NT phosphoribosylaminoimidazole synthetase YP_878494.1 1641403 R 386415 CDS YP_878495.1 118444649 4539783 complement(1642407..1643783) 1 NC_008593.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1643783 purF 4539783 purF Clostridium novyi NT amidophosphoribosyltransferase YP_878495.1 1642407 R 386415 CDS YP_878496.1 118444268 4541646 complement(1643801..1644508) 1 NC_008593.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1644508 purC 4541646 purC Clostridium novyi NT phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_878496.1 1643801 R 386415 CDS YP_878497.1 118444626 4539592 complement(1644510..1644989) 1 NC_008593.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1644989 purE 4539592 purE Clostridium novyi NT phosphoribosylaminoimidazole carboxylase catalytic subunit YP_878497.1 1644510 R 386415 CDS YP_878498.1 118442979 4541077 complement(1645219..1646607) 1 NC_008593.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein 1646607 4541077 NT01CX_2425 Clostridium novyi NT sodium/alanine symporter family protein YP_878498.1 1645219 R 386415 CDS YP_878499.1 118444597 4540097 complement(1647025..1647543) 1 NC_008593.1 hypothetical protein 1647543 4540097 NT01CX_2426 Clostridium novyi NT hypothetical protein YP_878499.1 1647025 R 386415 CDS YP_878500.1 118444418 4541219 complement(1647916..1648512) 1 NC_008593.1 similar to YPAA B. subtilis; hypothetical protein 1648512 4541219 NT01CX_2427 Clostridium novyi NT hypothetical protein YP_878500.1 1647916 R 386415 CDS YP_878501.1 118443061 4541784 1649289..1650596 1 NC_008593.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1650596 brnQ 4541784 brnQ Clostridium novyi NT branched-chain amino acid transport system II carrier protein YP_878501.1 1649289 D 386415 CDS YP_878502.1 118443411 4541722 complement(1650669..1652684) 1 NC_008593.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 1652684 feoB 4541722 feoB Clostridium novyi NT ferrous iron transport protein B YP_878502.1 1650669 R 386415 CDS YP_878503.1 118443756 4541381 complement(1652747..1652989) 1 NC_008593.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 1652989 4541381 NT01CX_2430 Clostridium novyi NT ferrous iron transport protein A YP_878503.1 1652747 R 386415 CDS YP_878504.1 118444400 4541202 complement(1653006..1653230) 1 NC_008593.1 identified by match to protein family HMM PF04023; hypothetical protein 1653230 4541202 NT01CX_2431 Clostridium novyi NT hypothetical protein YP_878504.1 1653006 R 386415 CDS YP_878505.1 118444577 4540120 complement(1653465..1653971) 1 NC_008593.1 hypothetical protein 1653971 4540120 NT01CX_2432 Clostridium novyi NT hypothetical protein YP_878505.1 1653465 R 386415 CDS YP_878506.1 118444462 4540061 complement(1654136..1654774) 1 NC_008593.1 hypothetical protein 1654774 4540061 NT01CX_2433 Clostridium novyi NT hypothetical protein YP_878506.1 1654136 R 386415 CDS YP_878507.1 118443915 4541501 complement(1654767..1655633) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1655633 4541501 NT01CX_2434 Clostridium novyi NT ABC transporter ATP-binding protein YP_878507.1 1654767 R 386415 CDS YP_878508.1 118443421 4541945 complement(1655645..1656016) 1 NC_008593.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1656016 4541945 NT01CX_2435 Clostridium novyi NT GntR family transcriptional regulator YP_878508.1 1655645 R 386415 CDS YP_878509.1 118442906 4540912 complement(1656125..1656736) 1 NC_008593.1 hypothetical protein 1656736 4540912 NT01CX_2436 Clostridium novyi NT hypothetical protein YP_878509.1 1656125 R 386415 CDS YP_878510.1 118444162 4541604 1657671..1658459 1 NC_008593.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 1658459 4541604 NT01CX_0001 Clostridium novyi NT histidinol-phosphatase YP_878510.1 1657671 D 386415 CDS YP_878511.1 118444726 4541605 complement(1658523..1659821) 1 NC_008593.1 membrane associated lipoprotein 1659821 4541605 NT01CX_0002 Clostridium novyi NT membrane associated lipoprotein YP_878511.1 1658523 R 386415 CDS YP_878512.1 118443113 4541606 complement(1660069..1660455) 1 NC_008593.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1660455 crcB 4541606 crcB Clostridium novyi NT camphor resistance protein CrcB YP_878512.1 1660069 R 386415 CDS YP_878513.1 118444727 4541607 complement(1660626..1661147) 1 NC_008593.1 identified by match to protein family HMM PF00892; integral membrane protein 1661147 4541607 NT01CX_0004 Clostridium novyi NT integral membrane protein YP_878513.1 1660626 R 386415 CDS YP_878514.1 118444002 4541608 1661728..1662282 1 NC_008593.1 identified by match to protein family HMM PF01381; DNA-binding protein 1662282 4541608 NT01CX_0005 Clostridium novyi NT DNA-binding protein YP_878514.1 1661728 D 386415 CDS YP_878515.1 118443256 4541609 complement(1662342..1662863) 1 NC_008593.1 identified by match to protein family HMM PF03929; PepSY-associated TM helix family protein 1662863 4541609 NT01CX_0006 Clostridium novyi NT PepSY-associated TM helix family protein YP_878515.1 1662342 R 386415 CDS YP_878516.1 118442974 4541610 1663130..1663690 1 NC_008593.1 hypothetical protein 1663690 4541610 NT01CX_0007 Clostridium novyi NT hypothetical protein YP_878516.1 1663130 D 386415 CDS YP_878517.1 118444728 4541611 complement(1663785..1664144) 1 NC_008593.1 hypothetical protein 1664144 4541611 NT01CX_0008 Clostridium novyi NT hypothetical protein YP_878517.1 1663785 R 386415 CDS YP_878518.1 118443598 4541612 complement(1664186..1664335) 1 NC_008593.1 microcin immunity protein MccF 1664335 4541612 NT01CX_0009 Clostridium novyi NT microcin immunity protein MccF YP_878518.1 1664186 R 386415 CDS YP_878519.1 118444729 4541613 complement(1664335..1664874) 1 NC_008593.1 identified by match to protein family HMM PF00583; acetyltransferase 1664874 4541613 NT01CX_0010 Clostridium novyi NT acetyltransferase YP_878519.1 1664335 R 386415 CDS YP_878520.1 118444527 4541614 complement(1664891..1665295) 1 NC_008593.1 hypothetical protein 1665295 4541614 NT01CX_0011 Clostridium novyi NT hypothetical protein YP_878520.1 1664891 R 386415 CDS YP_878521.1 118444730 4541615 complement(1665310..1665870) 1 NC_008593.1 identified by match to protein family HMM PF00583; acetyltransferase 1665870 4541615 NT01CX_0012 Clostridium novyi NT acetyltransferase YP_878521.1 1665310 R 386415 CDS YP_878522.1 118442991 4541616 complement(1666049..1667359) 1 NC_008593.1 identified by match to protein family HMM PF01554; MATE efflux family protein 1667359 4541616 NT01CX_0013 Clostridium novyi NT MATE efflux family protein YP_878522.1 1666049 R 386415 CDS YP_878523.1 118442868 4541617 complement(1667449..1668246) 1 NC_008593.1 identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 1668246 4541617 NT01CX_0014 Clostridium novyi NT ImpB/MucB/SamB family protein YP_878523.1 1667449 R 386415 CDS YP_878524.1 118444452 4541618 1668652..1670898 1 NC_008593.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1670898 pflB 4541618 pflB Clostridium novyi NT formate acetyltransferase YP_878524.1 1668652 D 386415 CDS YP_878525.1 118444194 4541619 1670885..1671607 1 NC_008593.1 identified by match to protein family HMM PF04055; pyruvate formate-lyase activating enzyme 1671607 4541619 NT01CX_0016 Clostridium novyi NT pyruvate formate-lyase activating enzyme YP_878525.1 1670885 D 386415 CDS YP_878526.1 118443396 4541620 complement(1671701..1672279) 1 NC_008593.1 hypothetical protein 1672279 4541620 NT01CX_0017 Clostridium novyi NT hypothetical protein YP_878526.1 1671701 R 386415 CDS YP_878527.1 118444731 4540011 complement(1672490..1672882) 1 NC_008593.1 hypothetical protein 1672882 4540011 NT01CX_0018 Clostridium novyi NT hypothetical protein YP_878527.1 1672490 R 386415 CDS YP_878528.1 118444732 4540012 complement(1672876..1673430) 1 NC_008593.1 identified by match to protein family HMM PF02632; BioY family protein 1673430 4540012 NT01CX_0019 Clostridium novyi NT BioY family protein YP_878528.1 1672876 R 386415 CDS YP_878529.1 118444733 4540013 1673887..1675113 1 NC_008593.1 identified by match to protein family HMM PF00999; Sodium/hydrogen exchanger family protein 1675113 4540013 NT01CX_0020 Clostridium novyi NT Sodium/hydrogen exchanger family protein YP_878529.1 1673887 D 386415 CDS YP_878530.1 118444734 4540014 1675339..1678881 1 NC_008593.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; serine protease 1678881 4540014 NT01CX_0021 Clostridium novyi NT serine protease YP_878530.1 1675339 D 386415 CDS YP_878531.1 118444735 4540015 complement(1678933..1680423) 1 NC_008593.1 hypothetical protein 1680423 4540015 NT01CX_0022 Clostridium novyi NT hypothetical protein YP_878531.1 1678933 R 386415 CDS YP_878532.1 118444736 4540016 1680521..1680751 1 NC_008593.1 hypothetical protein 1680751 4540016 NT01CX_0023 Clostridium novyi NT hypothetical protein YP_878532.1 1680521 D 386415 CDS YP_878533.1 118444737 4540017 complement(1680823..1682817) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1682817 4540017 NT01CX_0024 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878533.1 1680823 R 386415 CDS YP_878534.1 118444738 4540018 complement(1683016..1683597) 1 NC_008593.1 identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator 1683597 4540018 NT01CX_0025 Clostridium novyi NT TetR/AcrR family transcriptional regulator YP_878534.1 1683016 R 386415 CDS YP_878535.1 118444277 4540019 1683849..1685852 1 NC_008593.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; 2,4-dienoyl-CoA reductase 1685852 4540019 NT01CX_0026 Clostridium novyi NT 2,4-dienoyl-CoA reductase YP_878535.1 1683849 D 386415 CDS YP_878536.1 118444739 4540020 1685963..1686352 1 NC_008593.1 lipoprotein 1686352 4540020 NT01CX_0027 Clostridium novyi NT lipoprotein YP_878536.1 1685963 D 386415 CDS YP_878537.1 118444740 4540021 complement(1686669..1687097) 1 NC_008593.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1687097 dut 4540021 dut Clostridium novyi NT deoxyuridine 5'-triphosphate nucleotidohydrolase YP_878537.1 1686669 R 386415 CDS YP_878538.1 118444741 4540022 complement(1687177..1687287) 1 NC_008593.1 hypothetical protein 1687287 4540022 NT01CX_0029 Clostridium novyi NT hypothetical protein YP_878538.1 1687177 R 386415 CDS YP_878539.1 118443586 4540023 complement(1687454..1688305) 1 NC_008593.1 N-acetylmuramoyl-L-alanine amidase 1688305 4540023 NT01CX_0030 Clostridium novyi NT N-acetylmuramoyl-L-alanine amidase YP_878539.1 1687454 R 386415 CDS YP_878540.1 118444742 4540024 complement(1688562..1688675) 1 NC_008593.1 hypothetical protein 1688675 4540024 NT01CX_0031 Clostridium novyi NT hypothetical protein YP_878540.1 1688562 R 386415 CDS YP_878541.1 118444625 4540025 complement(1688976..1690190) 1 NC_008593.1 hypothetical protein 1690190 4540025 NT01CX_0032 Clostridium novyi NT hypothetical protein YP_878541.1 1688976 R 386415 CDS YP_878542.1 118444743 4540026 complement(1690770..1691585) 1 NC_008593.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1691585 4540026 NT01CX_0033 Clostridium novyi NT hypothetical protein YP_878542.1 1690770 R 386415 CDS YP_878543.1 118444744 4540027 complement(1691576..1692265) 1 NC_008593.1 identified by match to protein family HMM PF04816; hypothetical protein 1692265 4540027 NT01CX_0034 Clostridium novyi NT hypothetical protein YP_878543.1 1691576 R 386415 CDS YP_878544.1 118444376 4540028 complement(1692276..1693166) 1 NC_008593.1 hypothetical protein 1693166 4540028 NT01CX_0035 Clostridium novyi NT hypothetical protein YP_878544.1 1692276 R 386415 CDS YP_878545.1 118443249 4540029 1693365..1694804 1 NC_008593.1 ISBma2, transposase 1694804 4540029 NT01CX_0036 Clostridium novyi NT ISBma2, transposase YP_878545.1 1693365 D 386415 CDS YP_878546.1 118444745 4540344 complement(1694879..1695985) 1 NC_008593.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1695985 4540344 NT01CX_0037 Clostridium novyi NT RNA polymerase sigma factor RpoD YP_878546.1 1694879 R 386415 CDS YP_878547.1 118444746 4540345 complement(1695991..1697784) 1 NC_008593.1 synthesizes RNA primers at the replication forks; DNA primase 1697784 dnaG 4540345 dnaG Clostridium novyi NT DNA primase YP_878547.1 1695991 R 386415 CDS YP_878548.1 118444747 4540346 1698161..1699216 1 NC_008593.1 spore coat protein 1699216 4540346 NT01CX_0039 Clostridium novyi NT spore coat protein YP_878548.1 1698161 D 386415 CDS YP_878549.1 118444748 4540347 complement(1699285..1699881) 1 NC_008593.1 identified by match to protein family HMM PF00571; hypothetical protein 1699881 4540347 NT01CX_0040 Clostridium novyi NT hypothetical protein YP_878549.1 1699285 R 386415 CDS YP_878550.1 118444582 4540348 complement(1700075..1700701) 1 NC_008593.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 1700701 4540348 NT01CX_0041 Clostridium novyi NT UBA/TS-N domain-containing protein YP_878550.1 1700075 R 386415 CDS YP_878551.1 118444042 4540349 complement(1700694..1701464) 1 NC_008593.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1701464 recO 4540349 recO Clostridium novyi NT DNA repair protein RecO YP_878551.1 1700694 R 386415 CDS YP_878552.1 118444749 4540350 complement(1701485..1702369) 1 NC_008593.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1702369 era 4540350 era Clostridium novyi NT GTP-binding protein Era YP_878552.1 1701485 R 386415 CDS YP_878553.1 118444585 4540351 complement(1702379..1702777) 1 NC_008593.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1702777 4540351 NT01CX_0044 Clostridium novyi NT cytidine deaminase YP_878553.1 1702379 R 386415 CDS YP_878554.1 118444386 4540352 complement(1702877..1703587) 1 NC_008593.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase 1703587 dgkA 4540352 dgkA Clostridium novyi NT diacylglycerol kinase YP_878554.1 1702877 R 386415 CDS YP_878555.1 118443989 4540353 complement(1703682..1704182) 1 NC_008593.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 1704182 4540353 NT01CX_0046 Clostridium novyi NT metalloprotease YP_878555.1 1703682 R 386415 CDS YP_878556.1 118443272 4540354 complement(1704207..1706234) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07698; match to protein family HMM TIGR00277; HD superfamily hydrolase domain-containing protein 1706234 4540354 NT01CX_0047 Clostridium novyi NT HD superfamily hydrolase domain-containing protein YP_878556.1 1704207 R 386415 CDS YP_878557.1 118444382 4540355 complement(1706288..1707496) 1 NC_008593.1 identified by match to protein family HMM PF06898; stage IV sporulation protein 1707496 4540355 NT01CX_0048 Clostridium novyi NT stage IV sporulation protein YP_878557.1 1706288 R 386415 CDS YP_878558.1 118444750 4540356 complement(1707493..1707780) 1 NC_008593.1 hypothetical protein 1707780 4540356 NT01CX_0049 Clostridium novyi NT hypothetical protein YP_878558.1 1707493 R 386415 CDS YP_878559.1 118444751 4540357 complement(1707931..1708374) 1 NC_008593.1 identified by match to protein family HMM PF02637; GatB/Yqey family protein 1708374 4540357 NT01CX_0050 Clostridium novyi NT GatB/Yqey family protein YP_878559.1 1707931 R 386415 CDS YP_878560.1 118443087 4540358 complement(1708402..1708584) 1 NC_008593.1 identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 1708584 rpsU 4540358 rpsU Clostridium novyi NT 30S ribosomal protein S21 YP_878560.1 1708402 R 386415 CDS YP_878561.1 118444752 4540359 complement(1708724..1709068) 1 NC_008593.1 identified by match to protein family HMM PF01230; Hit family protein 1709068 4540359 NT01CX_0052 Clostridium novyi NT Hit family protein YP_878561.1 1708724 R 386415 CDS YP_878562.1 118444753 4540360 complement(1709155..1710456) 1 NC_008593.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme 1710456 4540360 NT01CX_0053 Clostridium novyi NT MiaB-like tRNA modifying enzyme YP_878562.1 1709155 R 386415 CDS YP_878563.1 118444754 4540361 complement(1710456..1711211) 1 NC_008593.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1711211 4540361 NT01CX_0054 Clostridium novyi NT 16S ribosomal RNA methyltransferase RsmE YP_878563.1 1710456 R 386415 CDS YP_878564.1 118444755 4540362 complement(1711227..1712165) 1 NC_008593.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1712165 prmA 4540362 prmA Clostridium novyi NT 50S ribosomal protein L11 methyltransferase YP_878564.1 1711227 R 386415 CDS YP_878565.1 118444331 4540363 complement(1712292..1713422) 1 NC_008593.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1713422 dnaJ 4540363 dnaJ Clostridium novyi NT chaperone protein DnaJ YP_878565.1 1712292 R 386415 CDS YP_878566.1 118444604 4541654 complement(1713521..1715374) 1 NC_008593.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1715374 dnaK 4541654 dnaK Clostridium novyi NT molecular chaperone DnaK YP_878566.1 1713521 R 386415 CDS YP_878567.1 118444756 4541655 complement(1715430..1716047) 1 NC_008593.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1716047 grpE 4541655 grpE Clostridium novyi NT heat shock protein GrpE YP_878567.1 1715430 R 386415 CDS YP_878568.1 118444757 4541656 complement(1716059..1717123) 1 NC_008593.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1717123 hrcA 4541656 hrcA Clostridium novyi NT heat-inducible transcription repressor YP_878568.1 1716059 R 386415 CDS YP_878569.1 118444758 4541657 complement(1717318..1718445) 1 NC_008593.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1718445 4541657 NT01CX_0060 Clostridium novyi NT coproporphyrinogen III oxidase YP_878569.1 1717318 R 386415 CDS YP_878570.1 118444759 4541658 complement(1718473..1720278) 1 NC_008593.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1720278 lepA 4541658 lepA Clostridium novyi NT GTP-binding protein LepA YP_878570.1 1718473 R 386415 CDS YP_878571.1 118444760 4541659 complement(1720376..1720771) 1 NC_008593.1 hypothetical protein 1720771 4541659 NT01CX_0062 Clostridium novyi NT hypothetical protein YP_878571.1 1720376 R 386415 CDS YP_878572.1 118444761 4541660 complement(1720823..1721929) 1 NC_008593.1 identified by match to protein family HMM PF07454; stage II sporulation protein P 1721929 4541660 NT01CX_0063 Clostridium novyi NT stage II sporulation protein P YP_878572.1 1720823 R 386415 CDS YP_878573.1 118442863 4541661 complement(1721993..1722967) 1 NC_008593.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 1722967 4541661 NT01CX_0064 Clostridium novyi NT germination protease YP_878573.1 1721993 R 386415 CDS YP_878574.1 118444762 4541662 1723165..1723431 1 NC_008593.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1723431 rpsT 4541662 rpsT Clostridium novyi NT 30S ribosomal protein S20 YP_878574.1 1723165 D 386415 CDS YP_878575.1 118443890 4541663 complement(1723501..1724523) 1 NC_008593.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1724523 holA 4541663 holA Clostridium novyi NT DNA polymerase III subunit delta YP_878575.1 1723501 R 386415 CDS YP_878576.1 118444707 4541664 complement(1724551..1725891) 1 NC_008593.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComE operon protein 3 1725891 4541664 NT01CX_0067 Clostridium novyi NT ComE operon protein 3 YP_878576.1 1724551 R 386415 CDS YP_878577.1 118444679 4541665 complement(1725977..1728574) 1 NC_008593.1 identified by match to protein family HMM PF00122; calcium-transporting ATPase 1728574 4541665 NT01CX_0068 Clostridium novyi NT calcium-transporting ATPase YP_878577.1 1725977 R 386415 CDS YP_878578.1 118443103 4541666 complement(1728700..1728936) 1 NC_008593.1 hypothetical protein 1728936 4541666 NT01CX_0069 Clostridium novyi NT hypothetical protein YP_878578.1 1728700 R 386415 CDS YP_878579.1 118444763 4541667 complement(1729028..1729702) 1 NC_008593.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein 1729702 4541667 NT01CX_0070 Clostridium novyi NT competence protein YP_878579.1 1729028 R 386415 CDS YP_878580.1 118444410 4541668 1729860..1731092 1 NC_008593.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1731092 4541668 NT01CX_0071 Clostridium novyi NT D-alanyl-D-alanine carboxypeptidase YP_878580.1 1729860 D 386415 CDS YP_878581.1 118444250 4541669 complement(1731131..1732036) 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1732036 4541669 NT01CX_0072 Clostridium novyi NT ribosomal large subunit pseudouridine synthase D YP_878581.1 1731131 R 386415 CDS YP_878582.1 118444764 4541670 complement(1732069..1733295) 1 NC_008593.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; membrane-bound protein lytR 1733295 4541670 NT01CX_0073 Clostridium novyi NT membrane-bound protein lytR YP_878582.1 1732069 R 386415 CDS YP_878583.1 118444765 4541671 complement(1733305..1733874) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; hypothetical protein 1733874 4541671 NT01CX_0074 Clostridium novyi NT hypothetical protein YP_878583.1 1733305 R 386415 CDS YP_878584.1 118444766 4541672 complement(1733887..1734489) 1 NC_008593.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 1734489 nadD 4541672 nadD Clostridium novyi NT nicotinic acid mononucleotide adenylyltransferase YP_878584.1 1733887 R 386415 CDS YP_878585.1 118443226 4541563 complement(1734591..1734884) 1 NC_008593.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 1734884 4541563 NT01CX_0076 Clostridium novyi NT hypothetical protein YP_878585.1 1734591 R 386415 CDS YP_878586.1 118444767 4541564 complement(1734900..1736174) 1 NC_008593.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1736174 obgE 4541564 obgE Clostridium novyi NT GTPase ObgE YP_878586.1 1734900 R 386415 CDS YP_878587.1 118444768 4541565 complement(1736206..1736745) 1 NC_008593.1 hypothetical protein 1736745 4541565 NT01CX_0078 Clostridium novyi NT hypothetical protein YP_878587.1 1736206 R 386415 CDS YP_878588.1 118444769 4541566 complement(1736803..1737102) 1 NC_008593.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1737102 rpmA 4541566 rpmA Clostridium novyi NT 50S ribosomal protein L27 YP_878588.1 1736803 R 386415 CDS YP_878589.1 118443476 4541567 complement(1737106..1737432) 1 NC_008593.1 identified by match to protein family HMM PF04327; hypothetical protein 1737432 4541567 NT01CX_0080 Clostridium novyi NT hypothetical protein YP_878589.1 1737106 R 386415 CDS YP_878590.1 118444770 4541568 complement(1737435..1737746) 1 NC_008593.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1737746 rplU 4541568 rplU Clostridium novyi NT 50S ribosomal protein L21 YP_878590.1 1737435 R 386415 CDS YP_878591.1 118444771 4541569 complement(1737873..1739318) 1 NC_008593.1 ribonuclease G 1739318 4541569 NT01CX_0082 Clostridium novyi NT ribonuclease G YP_878591.1 1737873 R 386415 CDS YP_878592.1 118443420 4541570 complement(1739343..1739960) 1 NC_008593.1 identified by match to protein family HMM PF00929; exonuclease 1739960 4541570 NT01CX_0083 Clostridium novyi NT exonuclease YP_878592.1 1739343 R 386415 CDS YP_878593.1 118444772 4541571 complement(1740102..1740746) 1 NC_008593.1 hypothetical protein 1740746 4541571 NT01CX_0084 Clostridium novyi NT hypothetical protein YP_878593.1 1740102 R 386415 CDS YP_878594.1 118442914 4541572 complement(1740784..1742655) 1 NC_008593.1 identified by match to protein family HMM PF04055; Fe-S oxidoreductase 1742655 4541572 NT01CX_0085 Clostridium novyi NT Fe-S oxidoreductase YP_878594.1 1740784 R 386415 CDS YP_878595.1 118444773 4541573 complement(1742729..1743646) 1 NC_008593.1 identified by match to protein family HMM PF00571; match to protein family HMM PF02163; sterol-regulatory element binding protein (SREBP) site 2 protease 1743646 4541573 NT01CX_0086 Clostridium novyi NT sterol-regulatory element binding protein (SREBP) site 2 protease YP_878595.1 1742729 R 386415 CDS YP_878596.1 118444774 4541574 complement(1743673..1744407) 1 NC_008593.1 identified by match to protein family HMM PF01551; cell wall endopeptidase 1744407 4541574 NT01CX_0087 Clostridium novyi NT cell wall endopeptidase YP_878596.1 1743673 R 386415 CDS YP_878597.1 118444686 4541575 complement(1744584..1745429) 1 NC_008593.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 1745429 nadC 4541575 nadC Clostridium novyi NT nicotinate-nucleotide pyrophosphorylase YP_878597.1 1744584 R 386415 CDS YP_878598.1 118444775 4541576 complement(1745410..1746705) 1 NC_008593.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1746705 4541576 NT01CX_0089 Clostridium novyi NT L-aspartate oxidase YP_878598.1 1745410 R 386415 CDS YP_878599.1 118444776 4541577 complement(1746717..1747619) 1 NC_008593.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1747619 4541577 NT01CX_0090 Clostridium novyi NT quinolinate synthetase YP_878599.1 1746717 R 386415 CDS YP_878600.1 118443921 4541578 1747850..1748506 1 NC_008593.1 hypothetical protein 1748506 4541578 NT01CX_0091 Clostridium novyi NT hypothetical protein YP_878600.1 1747850 D 386415 CDS YP_878601.1 118444777 4541579 1748772..1750085 1 NC_008593.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1750085 thiC 4541579 thiC Clostridium novyi NT thiamine biosynthesis protein ThiC YP_878601.1 1748772 D 386415 CDS YP_878602.1 118443057 4541580 1750220..1751800 1 NC_008593.1 identified by match to protein family HMM PF00488; mismatch repair protein MutS-like protein 1751800 4541580 NT01CX_0093 Clostridium novyi NT mismatch repair protein MutS-like protein YP_878602.1 1750220 D 386415 CDS YP_878603.1 118444778 4541581 complement(1751850..1752770) 1 NC_008593.1 identified by match to protein family HMM PF01458; hypothetical protein 1752770 4541581 NT01CX_0094 Clostridium novyi NT hypothetical protein YP_878603.1 1751850 R 386415 CDS YP_878604.1 118444779 4541582 complement(1752776..1753507) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1753507 4541582 NT01CX_0095 Clostridium novyi NT ABC transporter ATP-binding protein YP_878604.1 1752776 R 386415 CDS YP_878605.1 118444780 4540690 complement(1753615..1754040) 1 NC_008593.1 identified by match to protein family HMM PF04246; positive regulator of sigma(E), RseC/MucC superfamily 1754040 4540690 NT01CX_0096 Clostridium novyi NT positive regulator of sigma(E), RseC/MucC superfamily YP_878605.1 1753615 R 386415 CDS YP_878606.1 118443266 4540691 complement(1754193..1755536) 1 NC_008593.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1755536 4540691 NT01CX_0097 Clostridium novyi NT glutamate dehydrogenase YP_878606.1 1754193 R 386415 CDS YP_878607.1 118444781 4540692 complement(1755753..1756757) 1 NC_008593.1 3-oxoacyl-(acyl-carrier-protein) synthase III 1756757 4540692 NT01CX_0098 Clostridium novyi NT 3-oxoacyl-(acyl-carrier-protein) synthase III YP_878607.1 1755753 R 386415 CDS YP_878608.1 118444396 4540693 complement(1756891..1759344) 1 NC_008593.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878; mannose-1-phosphate guanyltransferase 1759344 4540693 NT01CX_0099 Clostridium novyi NT mannose-1-phosphate guanyltransferase YP_878608.1 1756891 R 386415 CDS YP_878609.1 118443238 4540694 complement(1759356..1760561) 1 NC_008593.1 identified by match to protein family HMM PF00534; glycoside hydrolase 1760561 4540694 NT01CX_0100 Clostridium novyi NT glycoside hydrolase YP_878609.1 1759356 R 386415 CDS YP_878610.1 118444498 4540695 complement(1760709..1761656) 1 NC_008593.1 identified by match to protein family HMM PF01145; hypothetical protein 1761656 4540695 NT01CX_0101 Clostridium novyi NT hypothetical protein YP_878610.1 1760709 R 386415 CDS YP_878611.1 118444057 4540696 complement(1761693..1762118) 1 NC_008593.1 hypothetical protein 1762118 4540696 NT01CX_0102 Clostridium novyi NT hypothetical protein YP_878611.1 1761693 R 386415 CDS YP_878612.1 118443772 4540697 1762341..1764254 1 NC_008593.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1764254 nadE 4540697 nadE Clostridium novyi NT NAD synthetase YP_878612.1 1762341 D 386415 CDS YP_878613.1 118443351 4540698 complement(1764320..1764742) 1 NC_008593.1 hypothetical protein 1764742 4540698 NT01CX_0104 Clostridium novyi NT hypothetical protein YP_878613.1 1764320 R 386415 CDS YP_878614.1 118444782 4540699 1764901..1767513 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 1767513 4540699 NT01CX_0105 Clostridium novyi NT cation transporter E1-E2 family ATPase YP_878614.1 1764901 D 386415 CDS YP_878615.1 118444222 4540700 complement(1767958..1768203) 1 NC_008593.1 hypothetical protein 1768203 4540700 NT01CX_0106 Clostridium novyi NT hypothetical protein YP_878615.1 1767958 R 386415 CDS YP_878616.1 118443974 4540701 complement(1768187..1768327) 1 NC_008593.1 Tgh044-like protein 1768327 4540701 NT01CX_0107 Clostridium novyi NT Tgh044-like protein YP_878616.1 1768187 R 386415 CDS YP_878617.1 118443656 4540702 complement(1768530..1768904) 1 NC_008593.1 hypothetical protein 1768904 4540702 NT01CX_0108 Clostridium novyi NT hypothetical protein YP_878617.1 1768530 R 386415 CDS YP_878618.1 118444783 4540703 complement(1768912..1769205) 1 NC_008593.1 hypothetical protein 1769205 4540703 NT01CX_0109 Clostridium novyi NT hypothetical protein YP_878618.1 1768912 R 386415 CDS YP_878619.1 118443677 4540704 1769183..1769518 1 NC_008593.1 hypothetical protein 1769518 4540704 NT01CX_0110 Clostridium novyi NT hypothetical protein YP_878619.1 1769183 D 386415 CDS YP_878620.1 118444784 4540705 complement(1769592..1769819) 1 NC_008593.1 hypothetical protein 1769819 4540705 NT01CX_0111 Clostridium novyi NT hypothetical protein YP_878620.1 1769592 R 386415 CDS YP_878621.1 118444297 4540706 complement(1770043..1770195) 1 NC_008593.1 integral membrane protein 1770195 4540706 NT01CX_0112 Clostridium novyi NT integral membrane protein YP_878621.1 1770043 R 386415 CDS YP_878622.1 118444785 4540707 complement(1770494..1770997) 1 NC_008593.1 hypothetical protein 1770997 4540707 NT01CX_0113 Clostridium novyi NT hypothetical protein YP_878622.1 1770494 R 386415 CDS YP_878623.1 118443134 4540708 complement(1771252..1771824) 1 NC_008593.1 hypothetical protein 1771824 4540708 NT01CX_0114 Clostridium novyi NT hypothetical protein YP_878623.1 1771252 R 386415 CDS YP_878624.1 118444289 4539991 complement(1771850..1772341) 1 NC_008593.1 hypothetical protein 1772341 4539991 NT01CX_0115 Clostridium novyi NT hypothetical protein YP_878624.1 1771850 R 386415 CDS YP_878625.1 118444786 4539992 complement(1772497..1772817) 1 NC_008593.1 hypothetical protein 1772817 4539992 NT01CX_0116 Clostridium novyi NT hypothetical protein YP_878625.1 1772497 R 386415 CDS YP_878626.1 118443225 4539993 complement(1773214..1773330) 1 NC_008593.1 hypothetical protein 1773330 4539993 NT01CX_0117 Clostridium novyi NT hypothetical protein YP_878626.1 1773214 R 386415 CDS YP_878627.1 118444787 4539994 complement(1773451..1773855) 1 NC_008593.1 hypothetical protein 1773855 4539994 NT01CX_0118 Clostridium novyi NT hypothetical protein YP_878627.1 1773451 R 386415 CDS YP_878628.1 118444788 4539995 complement(1773949..1774434) 1 NC_008593.1 hypothetical protein 1774434 4539995 NT01CX_0119 Clostridium novyi NT hypothetical protein YP_878628.1 1773949 R 386415 CDS YP_878629.1 118444789 4539996 complement(1774838..1775380) 1 NC_008593.1 hypothetical protein 1775380 4539996 NT01CX_0120 Clostridium novyi NT hypothetical protein YP_878629.1 1774838 R 386415 CDS YP_878630.1 118444790 4539997 complement(1775691..1775924) 1 NC_008593.1 hypothetical protein 1775924 4539997 NT01CX_0121 Clostridium novyi NT hypothetical protein YP_878630.1 1775691 R 386415 CDS YP_878631.1 118444791 4539998 complement(1775962..1776174) 1 NC_008593.1 hypothetical protein 1776174 4539998 NT01CX_0122 Clostridium novyi NT hypothetical protein YP_878631.1 1775962 R 386415 CDS YP_878632.1 118444792 4539999 complement(1776181..1776711) 1 NC_008593.1 hypothetical protein 1776711 4539999 NT01CX_0123 Clostridium novyi NT hypothetical protein YP_878632.1 1776181 R 386415 CDS YP_878633.1 118444793 4540000 complement(1776756..1777067) 1 NC_008593.1 hypothetical protein 1777067 4540000 NT01CX_0124 Clostridium novyi NT hypothetical protein YP_878633.1 1776756 R 386415 CDS YP_878634.1 118444794 4540001 complement(1777081..1777833) 1 NC_008593.1 hypothetical protein 1777833 4540001 NT01CX_0125 Clostridium novyi NT hypothetical protein YP_878634.1 1777081 R 386415 CDS YP_878635.1 118444795 4540002 complement(1777913..1778971) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein 1778971 4540002 NT01CX_0126 Clostridium novyi NT HD domain-containing protein YP_878635.1 1777913 R 386415 CDS YP_878636.1 118444796 4540003 1779119..1780369 1 NC_008593.1 hypothetical protein 1780369 4540003 NT01CX_0127 Clostridium novyi NT hypothetical protein YP_878636.1 1779119 D 386415 CDS YP_878637.1 118444797 4540004 complement(1780401..1781168) 1 NC_008593.1 identified by match to protein family HMM PF02231; match to protein family HMM TIGR01856; histidinol-phosphatase 1781168 4540004 NT01CX_0128 Clostridium novyi NT histidinol-phosphatase YP_878637.1 1780401 R 386415 CDS YP_878638.1 118444798 4540005 complement(1781225..1781620) 1 NC_008593.1 hypothetical protein 1781620 4540005 NT01CX_0129 Clostridium novyi NT hypothetical protein YP_878638.1 1781225 R 386415 CDS YP_878639.1 118444799 4540006 1781924..1782388 1 NC_008593.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 1782388 4540006 NT01CX_0130 Clostridium novyi NT AsnC family transcriptional regulator YP_878639.1 1781924 D 386415 CDS YP_878640.1 118444800 4540007 1782558..1782767 1 NC_008593.1 identified by match to protein family HMM PF04070; hypothetical protein 1782767 4540007 NT01CX_0131 Clostridium novyi NT hypothetical protein YP_878640.1 1782558 D 386415 CDS YP_878641.1 118444523 4540008 1783253..1783774 1 NC_008593.1 tryptophan transport protein 1783774 4540008 NT01CX_0132 Clostridium novyi NT tryptophan transport protein YP_878641.1 1783253 D 386415 CDS YP_878642.1 118443267 4540009 complement(1783858..1785612) 1 NC_008593.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1785612 4540009 NT01CX_0133 Clostridium novyi NT Na+/H+ antiporter family protein YP_878642.1 1783858 R 386415 CDS YP_878643.1 118444801 4540010 complement(1786029..1787342) 1 NC_008593.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1787342 argH 4540010 argH Clostridium novyi NT argininosuccinate lyase YP_878643.1 1786029 R 386415 CDS YP_878644.1 118443903 4540890 complement(1787426..1788634) 1 NC_008593.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1788634 argG 4540890 argG Clostridium novyi NT argininosuccinate synthase YP_878644.1 1787426 R 386415 CDS YP_878645.1 118444802 4540891 complement(1788691..1789425) 1 NC_008593.1 identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATPase 1789425 4540891 NT01CX_0136 Clostridium novyi NT polar amino acid ABC transporter ATPase YP_878645.1 1788691 R 386415 CDS YP_878646.1 118444293 4540892 complement(1789439..1790086) 1 NC_008593.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 1790086 4540892 NT01CX_0137 Clostridium novyi NT amino acid ABC transporter permease YP_878646.1 1789439 R 386415 CDS YP_878647.1 118443622 4540893 complement(1790092..1790904) 1 NC_008593.1 identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic protein 1790904 4540893 NT01CX_0138 Clostridium novyi NT amino acid ABC transporter periplasmic protein YP_878647.1 1790092 R 386415 CDS YP_878648.1 118444803 4540894 complement(1791151..1792149) 1 NC_008593.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00175; NAD-dependent isocitrate dehydrogenase 1792149 4540894 NT01CX_0139 Clostridium novyi NT NAD-dependent isocitrate dehydrogenase YP_878648.1 1791151 R 386415 CDS YP_878649.1 118444804 4540895 complement(1792168..1794093) 1 NC_008593.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1794093 4540895 NT01CX_0140 Clostridium novyi NT aconitate hydratase YP_878649.1 1792168 R 386415 CDS YP_878650.1 118444805 4540896 complement(1794390..1795097) 1 NC_008593.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1795097 4540896 NT01CX_0141 Clostridium novyi NT 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_878650.1 1794390 R 386415 CDS YP_878651.1 118443811 4540897 1795291..1796160 1 NC_008593.1 identified by match to protein family HMM PF00753; ComE-like protein 1796160 4540897 NT01CX_0142 Clostridium novyi NT ComE-like protein YP_878651.1 1795291 D 386415 CDS YP_878652.1 118444440 4540898 1796165..1796938 1 NC_008593.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1796938 4540898 NT01CX_0143 Clostridium novyi NT prolipoprotein diacylglyceryl transferase YP_878652.1 1796165 D 386415 CDS YP_878653.1 118443222 4540899 complement(1797021..1797974) 1 NC_008593.1 identified by match to protein family HMM PF02775; pyruvate synthase subunit porB 1797974 porB 4540899 porB Clostridium novyi NT pyruvate synthase subunit porB YP_878653.1 1797021 R 386415 CDS YP_878654.1 118444806 4540900 complement(1797987..1799174) 1 NC_008593.1 identified by match to protein family HMM PF01855; pyruvate synthase subunit porA 1799174 4540900 NT01CX_0145 Clostridium novyi NT pyruvate synthase subunit porA YP_878654.1 1797987 R 386415 CDS YP_878655.1 118444807 4540901 complement(1799191..1799493) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179; pyruvate synthase subunit porD 1799493 porD 4540901 porD Clostridium novyi NT pyruvate synthase subunit porD YP_878655.1 1799191 R 386415 CDS YP_878656.1 118444651 4540902 complement(1799480..1800064) 1 NC_008593.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; pyruvate synthase subunit porC 1800064 porG 4540902 porG Clostridium novyi NT pyruvate synthase subunit porC YP_878656.1 1799480 R 386415 CDS YP_878657.1 118444808 4540903 complement(1800154..1801527) 1 NC_008593.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1801527 4540903 NT01CX_0148 Clostridium novyi NT Na+/H+ antiporter family protein YP_878657.1 1800154 R 386415 CDS YP_878658.1 118443737 4540904 complement(1801756..1802964) 1 NC_008593.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 1802964 megL 4540904 megL Clostridium novyi NT methionine gamma-lyase YP_878658.1 1801756 R 386415 CDS YP_878659.1 118444809 4540905 complement(1803340..1804902) 1 NC_008593.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; transcriptional regulator 1804902 4540905 NT01CX_0150 Clostridium novyi NT transcriptional regulator YP_878659.1 1803340 R 386415 CDS YP_878661.1 118444811 4540713 complement(1810691..1811137) 1 NC_008593.1 hypothetical protein 1811137 4540713 NT01CX_0157 Clostridium novyi NT hypothetical protein YP_878661.1 1810691 R 386415 CDS YP_878662.1 118443743 4540714 complement(1811283..1812143) 1 NC_008593.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1812143 4540714 NT01CX_0158 Clostridium novyi NT undecaprenyl pyrophosphate phosphatase YP_878662.1 1811283 R 386415 CDS YP_878663.1 118444812 4540715 complement(1812234..1813382) 1 NC_008593.1 hypothetical protein 1813382 4540715 NT01CX_0159 Clostridium novyi NT hypothetical protein YP_878663.1 1812234 R 386415 CDS YP_878664.1 118444813 4540716 complement(1813458..1814336) 1 NC_008593.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1814336 4540716 NT01CX_0160 Clostridium novyi NT cation efflux family protein YP_878664.1 1813458 R 386415 CDS YP_878665.1 118444814 4540717 complement(1814502..1815500) 1 NC_008593.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 1815500 4540717 NT01CX_0161 Clostridium novyi NT catabolite control protein A YP_878665.1 1814502 R 386415 CDS YP_878666.1 118443514 4540718 complement(1815604..1816518) 1 NC_008593.1 identified by match to protein family HMM PF00532; ribose ABC transporter substrate-binding protein 1816518 4540718 NT01CX_0162 Clostridium novyi NT ribose ABC transporter substrate-binding protein YP_878666.1 1815604 R 386415 CDS YP_878667.1 118443303 4540719 complement(1816540..1817475) 1 NC_008593.1 identified by match to protein family HMM PF02653; ribose ABC transporter permease 1817475 4540719 NT01CX_0163 Clostridium novyi NT ribose ABC transporter permease YP_878667.1 1816540 R 386415 CDS YP_878668.1 118444815 4540720 complement(1817501..1819006) 1 NC_008593.1 identified by match to protein family HMM PF00005; ribose transport ATP-binding protein rbsA 1819006 4540720 NT01CX_0164 Clostridium novyi NT ribose transport ATP-binding protein rbsA YP_878668.1 1817501 R 386415 CDS YP_878669.1 118444816 4540721 complement(1819017..1819412) 1 NC_008593.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1819412 4540721 NT01CX_0165 Clostridium novyi NT D-ribose pyranase YP_878669.1 1819017 R 386415 CDS YP_878670.1 118444058 4540722 complement(1819413..1820345) 1 NC_008593.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 1820345 rbsK 4540722 rbsK Clostridium novyi NT ribokinase YP_878670.1 1819413 R 386415 CDS YP_878671.1 118444817 4540723 complement(1820469..1820753) 1 NC_008593.1 hypothetical protein 1820753 4540723 NT01CX_0167 Clostridium novyi NT hypothetical protein YP_878671.1 1820469 R 386415 CDS YP_878672.1 118442989 4540724 complement(1820856..1822013) 1 NC_008593.1 identified by match to protein family HMM PF01979; amidohydrolase family protein 1822013 4540724 NT01CX_0168 Clostridium novyi NT amidohydrolase family protein YP_878672.1 1820856 R 386415 CDS YP_878673.1 118444332 4541423 complement(1822174..1823598) 1 NC_008593.1 ISBma2, transposase 1823598 4541423 NT01CX_0169 Clostridium novyi NT ISBma2, transposase YP_878673.1 1822174 R 386415 CDS YP_878674.1 118444818 4541424 complement(1823817..1824128) 1 NC_008593.1 identified by match to protein family HMM PF01906; hypothetical protein 1824128 4541424 NT01CX_0170 Clostridium novyi NT hypothetical protein YP_878674.1 1823817 R 386415 CDS YP_878675.1 118444819 4541425 complement(1824228..1824515) 1 NC_008593.1 ABC transporter 1824515 4541425 NT01CX_0171 Clostridium novyi NT ABC transporter YP_878675.1 1824228 R 386415 CDS YP_878676.1 118444532 4541426 complement(1824609..1825478) 1 NC_008593.1 identified by match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 1825478 4541426 NT01CX_0172 Clostridium novyi NT oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_878676.1 1824609 R 386415 CDS YP_878677.1 118444820 4541427 complement(1825542..1826765) 1 NC_008593.1 transglutaminase 1826765 4541427 NT01CX_0173 Clostridium novyi NT transglutaminase YP_878677.1 1825542 R 386415 CDS YP_878678.1 118444821 4541428 1826956..1827225 1 NC_008593.1 ACT domain-containing protein; hypothetical protein 1827225 4541428 NT01CX_0174 Clostridium novyi NT hypothetical protein YP_878678.1 1826956 D 386415 CDS YP_878679.1 118444822 4541429 1827240..1828598 1 NC_008593.1 identified by match to protein family HMM PF05167; hypothetical protein 1828598 4541429 NT01CX_0175 Clostridium novyi NT hypothetical protein YP_878679.1 1827240 D 386415 CDS YP_878680.1 118443047 4541430 complement(1828687..1830408) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1830408 4541430 NT01CX_0176 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878680.1 1828687 R 386415 CDS YP_878681.1 118444823 4541431 complement(1830809..1831258) 1 NC_008593.1 lipoprotein signal peptidase (prolipoprotein signalpeptidase) (Signal peptidase II) (SPase II) 1831258 4541431 NT01CX_0177 Clostridium novyi NT lipoprotein signal peptidase (prolipoprotein signalpeptidase) (Signal peptidase II) (SPase II) YP_878681.1 1830809 R 386415 CDS YP_878682.1 118444592 4541432 complement(1831406..1831957) 1 NC_008593.1 inactivated, HRDL motif absent; serine/threonine kinase related protein 1831957 4541432 NT01CX_0178 Clostridium novyi NT serine/threonine kinase related protein YP_878682.1 1831406 R 386415 CDS YP_878683.1 118444824 4541433 complement(1832083..1832601) 1 NC_008593.1 inactivated, HRDL motif absent; serine/threonine kinase related protein 1832601 4541433 NT01CX_0179 Clostridium novyi NT serine/threonine kinase related protein YP_878683.1 1832083 R 386415 CDS YP_878684.1 118444825 4541434 complement(1832767..1833603) 1 NC_008593.1 identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 1833603 4541434 NT01CX_0180 Clostridium novyi NT S1 RNA-binding domain-containing protein YP_878684.1 1832767 R 386415 CDS YP_878685.1 118443246 4541435 1833857..1834585 1 NC_008593.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; phosphoserine phosphatase 1834585 4541435 NT01CX_0181 Clostridium novyi NT phosphoserine phosphatase YP_878685.1 1833857 D 386415 CDS YP_878686.1 118444826 4541436 complement(1834645..1835544) 1 NC_008593.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1835544 4541436 NT01CX_0182 Clostridium novyi NT LysR family transcriptional regulator YP_878686.1 1834645 R 386415 CDS YP_878687.1 118444827 4541437 complement(1835620..1836531) 1 NC_008593.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122; branched-chain amino acid aminotransferase 1836531 ilvE 4541437 ilvE Clostridium novyi NT branched-chain amino acid aminotransferase YP_878687.1 1835620 R 386415 CDS YP_878688.1 118444309 4541438 complement(1836691..1837509) 1 NC_008593.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; NLPA family lipoprotein 1837509 4541438 NT01CX_0184 Clostridium novyi NT NLPA family lipoprotein YP_878688.1 1836691 R 386415 CDS YP_878689.1 118444828 4541439 complement(1837547..1838185) 1 NC_008593.1 identified by match to protein family HMM PF00528; ABC transporter permease 1838185 4541439 NT01CX_0185 Clostridium novyi NT ABC transporter permease YP_878689.1 1837547 R 386415 CDS YP_878690.1 118443526 4541440 complement(1838185..1839141) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1839141 4541440 NT01CX_0186 Clostridium novyi NT ABC transporter ATP-binding protein YP_878690.1 1838185 R 386415 CDS YP_878691.1 118443427 4541441 complement(1839418..1840734) 1 NC_008593.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1840734 4541441 NT01CX_0187 Clostridium novyi NT aspartate kinase YP_878691.1 1839418 R 386415 CDS YP_878692.1 118444829 4541014 complement(1840934..1841800) 1 NC_008593.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase 1841800 4541014 NT01CX_0188 Clostridium novyi NT methionine aminopeptidase YP_878692.1 1840934 R 386415 CDS YP_878693.1 118444474 4541015 complement(1841882..1843009) 1 NC_008593.1 identified by match to protein family HMM PF05504; spore germination protein, gerKC 1843009 4541015 NT01CX_0189 Clostridium novyi NT spore germination protein, gerKC YP_878693.1 1841882 R 386415 CDS YP_878694.1 118443935 4541016 complement(1843015..1844127) 1 NC_008593.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 1844127 4541016 NT01CX_0190 Clostridium novyi NT spore germination protein YP_878694.1 1843015 R 386415 CDS YP_878695.1 118443617 4541017 complement(1844111..1845601) 1 NC_008593.1 similar to Bacillus/Clostridium; identified by match to protein family HMM PF03323; GerA spore germination protein 1845601 4541017 NT01CX_0191 Clostridium novyi NT GerA spore germination protein YP_878695.1 1844111 R 386415 CDS YP_878696.1 118444830 4541018 complement(1845783..1847054) 1 NC_008593.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 1847054 ncs2 4541018 ncs2 Clostridium novyi NT uracil-xanthine permease YP_878696.1 1845783 R 386415 CDS YP_878697.1 118444725 4541019 complement(1847333..1847632) 1 NC_008593.1 early transcription factor 70 kDa subunit (VETF small subunit) 1847632 4541019 NT01CX_0193 Clostridium novyi NT early transcription factor 70 kDa subunit (VETF small subunit) YP_878697.1 1847333 R 386415 CDS YP_878698.1 118444354 4541020 1847803..1848396 1 NC_008593.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 1848396 4541020 NT01CX_0194 Clostridium novyi NT Fe/Mn family superoxide dismutase YP_878698.1 1847803 D 386415 CDS YP_878699.1 118444831 4541021 complement(1848457..1850019) 1 NC_008593.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage gated chloride channel family protein 1850019 4541021 NT01CX_0195 Clostridium novyi NT voltage gated chloride channel family protein YP_878699.1 1848457 R 386415 CDS YP_878700.1 118443516 4541022 1850435..1851160 1 NC_008593.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 1851160 4541022 NT01CX_0196 Clostridium novyi NT glycerophosphoryl diester phosphodiesterase family protein YP_878700.1 1850435 D 386415 CDS YP_878701.1 118444832 4541023 1851190..1852560 1 NC_008593.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1852560 4541023 NT01CX_0197 Clostridium novyi NT sodium:alanine symporter family protein YP_878701.1 1851190 D 386415 CDS YP_878702.1 118443822 4541024 complement(1852648..1853601) 1 NC_008593.1 identified by match to protein family HMM PF00753; metallo beta-lactamase superfamily hydrolase 1853601 4541024 NT01CX_0198 Clostridium novyi NT metallo beta-lactamase superfamily hydrolase YP_878702.1 1852648 R 386415 CDS YP_878703.1 118443101 4541025 complement(1855378..1855665) 1 NC_008593.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 1855665 4541025 NT01CX_0199 Clostridium novyi NT CRISPR-associated Cas2 family protein YP_878703.1 1855378 R 386415 CDS YP_878704.1 118443013 4541026 complement(1855665..1856663) 1 NC_008593.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 1856663 4541026 NT01CX_0200 Clostridium novyi NT CRISPR-associated Cas1 family protein YP_878704.1 1855665 R 386415 CDS YP_878705.1 118444833 4541027 complement(1856676..1857170) 1 NC_008593.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein 1857170 4541027 NT01CX_0201 Clostridium novyi NT CRISPR-associated Cas4 family protein YP_878705.1 1856676 R 386415 CDS YP_878706.1 118444834 4541028 complement(1857179..1859800) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 1859800 4541028 NT01CX_0202 Clostridium novyi NT CRISPR-associated helicase Cas3 YP_878706.1 1857179 R 386415 CDS YP_878707.1 118442908 4541029 complement(1859861..1860499) 1 NC_008593.1 hypothetical protein 1860499 4541029 NT01CX_0203 Clostridium novyi NT hypothetical protein YP_878707.1 1859861 R 386415 CDS YP_878708.1 118444835 4541030 complement(1860631..1861650) 1 NC_008593.1 hypothetical protein 1861650 4541030 NT01CX_0204 Clostridium novyi NT hypothetical protein YP_878708.1 1860631 R 386415 CDS YP_878709.1 118444836 4541031 complement(1861640..1863424) 1 NC_008593.1 hypothetical protein 1863424 4541031 NT01CX_0205 Clostridium novyi NT hypothetical protein YP_878709.1 1861640 R 386415 CDS YP_878710.1 118444837 4541032 complement(1863437..1864129) 1 NC_008593.1 identified by match to protein family HMM TIGR01877; CRISPR-associated Cas5e family protein 1864129 4541032 NT01CX_0206 Clostridium novyi NT CRISPR-associated Cas5e family protein YP_878710.1 1863437 R 386415 CDS YP_878711.1 118443702 4541033 complement(1866486..1866800) 1 NC_008593.1 hypothetical protein 1866800 4541033 NT01CX_0207 Clostridium novyi NT hypothetical protein YP_878711.1 1866486 R 386415 CDS YP_878712.1 118443207 4541164 complement(1866812..1867072) 1 NC_008593.1 hypothetical protein 1867072 4541164 NT01CX_0208 Clostridium novyi NT hypothetical protein YP_878712.1 1866812 R 386415 CDS YP_878713.1 118444838 4541165 complement(1870715..1871470) 1 NC_008593.1 identified by match to protein family HMM PF01841; transglutaminase 1871470 4541165 NT01CX_0209 Clostridium novyi NT transglutaminase YP_878713.1 1870715 R 386415 CDS YP_878714.1 118444839 4541166 complement(1871705..1872298) 1 NC_008593.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase family protein 1872298 4541166 NT01CX_0210 Clostridium novyi NT sortase family protein YP_878714.1 1871705 R 386415 CDS YP_878715.1 118444840 4541167 complement(1872368..1875046) 1 NC_008593.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; S-layer protein 1875046 4541167 NT01CX_0211 Clostridium novyi NT S-layer protein YP_878715.1 1872368 R 386415 CDS YP_878716.1 118444064 4541168 complement(1875398..1876453) 1 NC_008593.1 hypothetical protein 1876453 4541168 NT01CX_0212 Clostridium novyi NT hypothetical protein YP_878716.1 1875398 R 386415 CDS YP_878717.1 118443879 4541169 complement(1876650..1878707) 1 NC_008593.1 identified by match to protein family HMM PF00149; match to protein family HMM PF01476; match to protein family HMM PF02872; 2',3'-cyclic-nucleotide 2'-phosphodiesterase 1878707 4541169 NT01CX_0213 Clostridium novyi NT 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_878717.1 1876650 R 386415 CDS YP_878718.1 118444841 4541170 complement(1878857..1879687) 1 NC_008593.1 hypothetical protein 1879687 4541170 NT01CX_0214 Clostridium novyi NT hypothetical protein YP_878718.1 1878857 R 386415 CDS YP_878719.1 118444842 4541171 complement(1879710..1880921) 1 NC_008593.1 identified by match to protein family HMM PF06792; hypothetical protein 1880921 4541171 NT01CX_0215 Clostridium novyi NT hypothetical protein YP_878719.1 1879710 R 386415 CDS YP_878720.1 118444843 4541172 complement(1881113..1882288) 1 NC_008593.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1882288 4541172 NT01CX_0216 Clostridium novyi NT AraC family transcriptional regulator YP_878720.1 1881113 R 386415 CDS YP_878721.1 118443124 4541173 complement(1882489..1883487) 1 NC_008593.1 hypothetical protein 1883487 4541173 NT01CX_0217 Clostridium novyi NT hypothetical protein YP_878721.1 1882489 R 386415 CDS YP_878722.1 118444844 4541174 complement(1883505..1884197) 1 NC_008593.1 hypothetical protein 1884197 4541174 NT01CX_0218 Clostridium novyi NT hypothetical protein YP_878722.1 1883505 R 386415 CDS YP_878723.1 118444845 4541175 complement(1884500..1885303) 1 NC_008593.1 identified by match to protein family HMM PF00106; short-chain dehydrogenase 1885303 4541175 NT01CX_0219 Clostridium novyi NT short-chain dehydrogenase YP_878723.1 1884500 R 386415 CDS YP_878724.1 118442929 4541176 complement(1885424..1887721) 1 NC_008593.1 identified by match to protein family HMM PF00004; negative regulator of genetic competence clpC/mecB 1887721 4541176 NT01CX_0220 Clostridium novyi NT negative regulator of genetic competence clpC/mecB YP_878724.1 1885424 R 386415 CDS YP_878725.1 118444846 4541177 1887913..1889259 1 NC_008593.1 identified by match to protein family HMM PF00266; aminotransferase 1889259 4541177 NT01CX_0221 Clostridium novyi NT aminotransferase YP_878725.1 1887913 D 386415 CDS YP_878726.1 118442932 4541178 complement(1889308..1889700) 1 NC_008593.1 hypothetical protein 1889700 4541178 NT01CX_0222 Clostridium novyi NT hypothetical protein YP_878726.1 1889308 R 386415 CDS YP_878727.1 118444847 4541179 complement(1889766..1890104) 1 NC_008593.1 hypothetical protein 1890104 4541179 NT01CX_0223 Clostridium novyi NT hypothetical protein YP_878727.1 1889766 R 386415 CDS YP_878728.1 118443927 4541180 complement(1890178..1895178) 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensory transduction histidine kinase 1895178 4541180 NT01CX_0224 Clostridium novyi NT sensory transduction histidine kinase YP_878728.1 1890178 R 386415 CDS YP_878729.1 118444848 4541181 complement(1895306..1896160) 1 NC_008593.1 identified by match to protein family HMM PF01734; patatin-like phospholipase 1896160 4541181 NT01CX_0225 Clostridium novyi NT patatin-like phospholipase YP_878729.1 1895306 R 386415 CDS YP_878730.1 118443422 4541182 complement(1896314..1896562) 1 NC_008593.1 spore coat protein CotF 1896562 4541182 NT01CX_0226 Clostridium novyi NT spore coat protein CotF YP_878730.1 1896314 R 386415 CDS YP_878731.1 118443954 4540537 complement(1896594..1896779) 1 NC_008593.1 hypothetical protein 1896779 4540537 NT01CX_0227 Clostridium novyi NT hypothetical protein YP_878731.1 1896594 R 386415 CDS YP_878732.1 118444849 4540538 complement(1896876..1897520) 1 NC_008593.1 hypothetical protein 1897520 4540538 NT01CX_0228 Clostridium novyi NT hypothetical protein YP_878732.1 1896876 R 386415 CDS YP_878733.1 118443585 4540539 1897756..1899072 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1899072 4540539 NT01CX_0229 Clostridium novyi NT MATE efflux family protein YP_878733.1 1897756 D 386415 CDS YP_878734.1 118444850 4540540 complement(1899135..1899785) 1 NC_008593.1 identified by match to protein family HMM PF00596; L-fuculose phosphate aldolase 1899785 4540540 NT01CX_0230 Clostridium novyi NT L-fuculose phosphate aldolase YP_878734.1 1899135 R 386415 CDS YP_878735.1 118444851 4540541 1899990..1900850 1 NC_008593.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel protein 1900850 4540541 NT01CX_0231 Clostridium novyi NT mechanosensitive ion channel protein YP_878735.1 1899990 D 386415 CDS YP_878736.1 118444852 4540542 complement(1900888..1902138) 1 NC_008593.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629; UV damage endonuclease 1902138 uvsE 4540542 uvsE Clostridium novyi NT UV damage endonuclease YP_878736.1 1900888 R 386415 CDS YP_878737.1 118444714 4540543 1902237..1903181 1 NC_008593.1 identified by match to protein family HMM PF00892; DMT family permease 1903181 4540543 NT01CX_0233 Clostridium novyi NT DMT family permease YP_878737.1 1902237 D 386415 CDS YP_878738.1 118443324 4540544 complement(1903199..1904581) 1 NC_008593.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1904581 4540544 NT01CX_0234 Clostridium novyi NT citrate synthase YP_878738.1 1903199 R 386415 CDS YP_878739.1 118443785 4540545 1904725..1906155 1 NC_008593.1 identified by match to protein family HMM PF02080; Sodium/hydrogen exchanger family protein 1906155 4540545 NT01CX_0235 Clostridium novyi NT Sodium/hydrogen exchanger family protein YP_878739.1 1904725 D 386415 CDS YP_878740.1 118444477 4540546 1906872..1907819 1 NC_008593.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1907819 ldh 4540546 ldh Clostridium novyi NT L-lactate dehydrogenase YP_878740.1 1906872 D 386415 CDS YP_878741.1 118443867 4540547 complement(1907902..1913316) 1 NC_008593.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1913316 4540547 NT01CX_0237 Clostridium novyi NT diguanylate cyclase YP_878741.1 1907902 R 386415 CDS YP_878742.1 118444853 4540548 1913522..1913917 1 NC_008593.1 identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 1913917 4540548 NT01CX_0238 Clostridium novyi NT nucleoside diphosphate kinase YP_878742.1 1913522 D 386415 CDS YP_878743.1 118444854 4540549 complement(1914020..1914541) 1 NC_008593.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1914541 4540549 NT01CX_0239 Clostridium novyi NT MutT/nudix family protein YP_878743.1 1914020 R 386415 CDS YP_878744.1 118444855 4540550 complement(1914989..1916191) 1 NC_008593.1 ABC transporter permease 1916191 4540550 NT01CX_0240 Clostridium novyi NT ABC transporter permease YP_878744.1 1914989 R 386415 CDS YP_878745.1 118443138 4540551 complement(1916191..1917102) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1917102 4540551 NT01CX_0241 Clostridium novyi NT ABC transporter ATP-binding protein YP_878745.1 1916191 R 386415 CDS YP_878746.1 118444720 4540552 complement(1917118..1918275) 1 NC_008593.1 membrane spanning protein 1918275 4540552 NT01CX_0242 Clostridium novyi NT membrane spanning protein YP_878746.1 1917118 R 386415 CDS YP_878747.1 118444077 4540553 complement(1918259..1919152) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1919152 4540553 NT01CX_0243 Clostridium novyi NT ABC transporter ATP-binding protein YP_878747.1 1918259 R 386415 CDS YP_878748.1 118444856 4540554 complement(1919149..1919529) 1 NC_008593.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1919529 4540554 NT01CX_0244 Clostridium novyi NT GntR family transcriptional regulator YP_878748.1 1919149 R 386415 CDS YP_878749.1 118444857 4540555 complement(1919739..1920677) 1 NC_008593.1 identified by match to protein family HMM PF01734; patatin-like phospholipase 1920677 4540555 NT01CX_0245 Clostridium novyi NT patatin-like phospholipase YP_878749.1 1919739 R 386415 CDS YP_878750.1 118444858 4540556 1921129..1921932 1 NC_008593.1 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1921932 thiD 4540556 thiD Clostridium novyi NT phosphomethylpyrimidine kinase YP_878750.1 1921129 D 386415 CDS YP_878751.1 118442973 4539739 1921961..1922758 1 NC_008593.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694; hydroxyethylthiazole kinase 1922758 thiM 4539739 thiM Clostridium novyi NT hydroxyethylthiazole kinase YP_878751.1 1921961 D 386415 CDS YP_878752.1 118444446 4539740 1922749..1923363 1 NC_008593.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1923363 thiE 4539740 thiE Clostridium novyi NT thiamine-phosphate pyrophosphorylase YP_878752.1 1922749 D 386415 CDS YP_878753.1 118444859 4539741 complement(1923413..1923580) 1 NC_008593.1 hypothetical protein 1923580 4539741 NT01CX_0249 Clostridium novyi NT hypothetical protein YP_878753.1 1923413 R 386415 CDS YP_878755.1 118444860 4539746 1929015..1929794 1 NC_008593.1 hypothetical protein 1929794 4539746 NT01CX_0254 Clostridium novyi NT hypothetical protein YP_878755.1 1929015 D 386415 CDS YP_878756.1 118444231 4539747 complement(1929869..1930819) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; anaerobic sulfite reductase subunit C 1930819 4539747 NT01CX_0255 Clostridium novyi NT anaerobic sulfite reductase subunit C YP_878756.1 1929869 R 386415 CDS YP_878757.1 118444861 4539748 complement(1930832..1931623) 1 NC_008593.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1931623 4539748 NT01CX_0256 Clostridium novyi NT anaerobic sulfite reductase subunit B YP_878757.1 1930832 R 386415 CDS YP_878758.1 118444862 4539749 complement(1931623..1932624) 1 NC_008593.1 identified by match to protein family HMM PF00037; anaerobic sulfite reductase subunit A 1932624 4539749 NT01CX_0257 Clostridium novyi NT anaerobic sulfite reductase subunit A YP_878758.1 1931623 R 386415 CDS YP_878759.1 118444863 4539750 complement(1932710..1933390) 1 NC_008593.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator 1933390 4539750 NT01CX_0258 Clostridium novyi NT transcriptional regulator YP_878759.1 1932710 R 386415 CDS YP_878760.1 118444864 4539751 complement(1933384..1934685) 1 NC_008593.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713; glutamate-1-semialdehyde-2,1-aminomutase 1934685 hemL 4539751 hemL Clostridium novyi NT glutamate-1-semialdehyde-2,1-aminomutase YP_878760.1 1933384 R 386415 CDS YP_878761.1 118443554 4539752 complement(1934691..1935662) 1 NC_008593.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1935662 hemB 4539752 hemB Clostridium novyi NT delta-aminolevulinic acid dehydratase YP_878761.1 1934691 R 386415 CDS YP_878762.1 118444865 4539753 complement(1935693..1937186) 1 NC_008593.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 1937186 4539753 NT01CX_0261 Clostridium novyi NT uroporphyrinogen III synthase/methyltransferase YP_878762.1 1935693 R 386415 CDS YP_878763.1 118444575 4539754 complement(1937188..1938090) 1 NC_008593.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1938090 hemC 4539754 hemC Clostridium novyi NT porphobilinogen deaminase YP_878763.1 1937188 R 386415 CDS YP_878764.1 118443235 4539755 complement(1938130..1938726) 1 NC_008593.1 identified by match to protein family HMM TIGR01470; siroheme synthase 1938726 4539755 NT01CX_0263 Clostridium novyi NT siroheme synthase YP_878764.1 1938130 R 386415 CDS YP_878765.1 118443402 4541260 complement(1938741..1939976) 1 NC_008593.1 identified by match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase 1939976 hemA 4541260 hemA Clostridium novyi NT glutamyl-tRNA reductase YP_878765.1 1938741 R 386415 CDS YP_878766.1 118443510 4541261 complement(1940089..1941003) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; anaerobic sulfite reductase subunit C 1941003 4541261 NT01CX_0265 Clostridium novyi NT anaerobic sulfite reductase subunit C YP_878766.1 1940089 R 386415 CDS YP_878767.1 118444306 4541262 complement(1941256..1942560) 1 NC_008593.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1942560 4541262 NT01CX_0266 Clostridium novyi NT Na+/H+ antiporter family protein YP_878767.1 1941256 R 386415 CDS YP_878768.1 118444158 4541263 1942804..1943256 1 NC_008593.1 hypothetical protein 1943256 4541263 NT01CX_0267 Clostridium novyi NT hypothetical protein YP_878768.1 1942804 D 386415 CDS YP_878769.1 118443628 4541264 complement(1943526..1944965) 1 NC_008593.1 ISBma2, transposase 1944965 4541264 NT01CX_0268 Clostridium novyi NT ISBma2, transposase YP_878769.1 1943526 R 386415 CDS YP_878770.1 118444866 4541265 1945208..1945591 1 NC_008593.1 prephenate dehydratase 1945591 4541265 NT01CX_0269 Clostridium novyi NT prephenate dehydratase YP_878770.1 1945208 D 386415 CDS YP_878771.1 118443121 4541266 1945599..1946033 1 NC_008593.1 identified by match to protein family HMM PF01842; prephenate dehydratase 1946033 4541266 NT01CX_0270 Clostridium novyi NT prephenate dehydratase YP_878771.1 1945599 D 386415 CDS YP_878773.1 118444867 4541271 complement(1951434..1953092) 1 NC_008593.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1953092 glnS 4541271 glnS Clostridium novyi NT glutaminyl-tRNA synthetase YP_878773.1 1951434 R 386415 CDS YP_878774.1 118444868 4541272 complement(1953440..1953586) 1 NC_008593.1 prophage LambdaBa02, lipoprotein 1953586 4541272 NT01CX_0276 Clostridium novyi NT prophage LambdaBa02, lipoprotein YP_878774.1 1953440 R 386415 CDS YP_878775.1 118444869 4541273 complement(1953746..1954399) 1 NC_008593.1 identified by match to protein family HMM PF01144; butyrate-acetoacetate CoA-transferase subunit B 1954399 4541273 NT01CX_0277 Clostridium novyi NT butyrate-acetoacetate CoA-transferase subunit B YP_878775.1 1953746 R 386415 CDS YP_878776.1 118443473 4541274 complement(1954413..1955129) 1 NC_008593.1 identified by match to protein family HMM PF01144; acetate CoA-transferase subunit alpha 1955129 4541274 NT01CX_0278 Clostridium novyi NT acetate CoA-transferase subunit alpha YP_878776.1 1954413 R 386415 CDS YP_878777.1 118444870 4541275 1955680..1956573 1 NC_008593.1 identified by match to protein family HMM PF00892; integral membrane protein 1956573 4541275 NT01CX_0279 Clostridium novyi NT integral membrane protein YP_878777.1 1955680 D 386415 CDS YP_878778.1 118444871 4539816 complement(1956619..1957932) 1 NC_008593.1 identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase family protein 1957932 4539816 NT01CX_0280 Clostridium novyi NT type I phosphodiesterase/nucleotide pyrophosphatase family protein YP_878778.1 1956619 R 386415 CDS YP_878779.1 118444872 4539817 1958129..1959712 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1959712 4539817 NT01CX_0281 Clostridium novyi NT ABC transporter ATP-binding protein YP_878779.1 1958129 D 386415 CDS YP_878780.1 118444873 4539818 complement(1959848..1961848) 1 NC_008593.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; translation elongation factor G 1961848 fusA 4539818 fusA Clostridium novyi NT translation elongation factor G YP_878780.1 1959848 R 386415 CDS YP_878781.1 118444874 4539819 complement(1961915..1965286) 1 NC_008593.1 identified by match to protein family HMM PF05193; zinc-dependent peptidase 1965286 4539819 NT01CX_0283 Clostridium novyi NT zinc-dependent peptidase YP_878781.1 1961915 R 386415 CDS YP_878782.1 118444875 4539820 1965551..1966735 1 NC_008593.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1966735 4539820 NT01CX_0284 Clostridium novyi NT aspartate aminotransferase YP_878782.1 1965551 D 386415 CDS YP_878783.1 118444876 4539821 complement(1966805..1968199) 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1968199 4539821 NT01CX_0285 Clostridium novyi NT MATE efflux family protein YP_878783.1 1966805 R 386415 CDS YP_878784.1 118443465 4539822 complement(1968256..1970415) 1 NC_008593.1 phage infection protein 1970415 4539822 NT01CX_0286 Clostridium novyi NT phage infection protein YP_878784.1 1968256 R 386415 CDS YP_878785.1 118443823 4539823 1970760..1971851 1 NC_008593.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1971851 gldA 4539823 gldA Clostridium novyi NT glycerol dehydrogenase YP_878785.1 1970760 D 386415 CDS YP_878786.1 118444877 4539824 complement(1971959..1972819) 1 NC_008593.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 1972819 4539824 NT01CX_0288 Clostridium novyi NT aldose 1-epimerase YP_878786.1 1971959 R 386415 CDS YP_878787.1 118444878 4539825 complement(1972905..1973834) 1 NC_008593.1 identified by match to protein family HMM PF00294; tagatose-6-phosphate kinase 1973834 4539825 NT01CX_0289 Clostridium novyi NT tagatose-6-phosphate kinase YP_878787.1 1972905 R 386415 CDS YP_878788.1 118443441 4539826 complement(1973845..1974699) 1 NC_008593.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01858; tagatose bisphosphate family class II aldolase 1974699 4539826 NT01CX_0290 Clostridium novyi NT tagatose bisphosphate family class II aldolase YP_878788.1 1973845 R 386415 CDS YP_878789.1 118444879 4539827 complement(1974724..1975875) 1 NC_008593.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 1975875 nagA 4539827 nagA Clostridium novyi NT N-acetylglucosamine-6-phosphate deacetylase YP_878789.1 1974724 R 386415 CDS YP_878790.1 118443883 4539828 complement(1975907..1977085) 1 NC_008593.1 identified by match to protein family HMM PF01380; phosphosugar isomerase 1977085 4539828 NT01CX_0292 Clostridium novyi NT phosphosugar isomerase YP_878790.1 1975907 R 386415 CDS YP_878791.1 118443452 4539829 complement(1977179..1977913) 1 NC_008593.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1977913 4539829 NT01CX_0293 Clostridium novyi NT GntR family transcriptional regulator YP_878791.1 1977179 R 386415 CDS YP_878792.1 118444439 4539830 1978132..1978443 1 NC_008593.1 hypothetical protein 1978443 4539830 NT01CX_0294 Clostridium novyi NT hypothetical protein YP_878792.1 1978132 D 386415 CDS YP_878793.1 118444880 4539831 1978472..1979596 1 NC_008593.1 anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 1979596 4539831 NT01CX_0295 Clostridium novyi NT anaerobic sulfatase-maturase YP_878793.1 1978472 D 386415 CDS YP_878794.1 118444881 4539832 complement(1979682..1980635) 1 NC_008593.1 identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD family ATPase 1980635 4539832 NT01CX_0296 Clostridium novyi NT BadF/BadG/BcrA/BcrD family ATPase YP_878794.1 1979682 R 386415 CDS YP_878795.1 118444882 4539833 complement(1980656..1982107) 1 NC_008593.1 identified by match to protein family HMM PF00884; N-acetylgalactosamine 6-sulfate sulfatase 1982107 4539833 NT01CX_0297 Clostridium novyi NT N-acetylgalactosamine 6-sulfate sulfatase YP_878795.1 1980656 R 386415 CDS YP_878796.1 118444883 4539834 complement(1982143..1982274) 1 NC_008593.1 hypothetical protein 1982274 4539834 NT01CX_0298 Clostridium novyi NT hypothetical protein YP_878796.1 1982143 R 386415 CDS YP_878797.1 118443403 4539835 complement(1982276..1983781) 1 NC_008593.1 identified by match to protein family HMM PF00474; Sodium:solute symporter family protein 1983781 4539835 NT01CX_0299 Clostridium novyi NT Sodium:solute symporter family protein YP_878797.1 1982276 R 386415 CDS YP_878798.1 118442882 4540947 complement(1984205..1985719) 1 NC_008593.1 identified by match to protein family HMM PF00884; sulfatase 1985719 4540947 NT01CX_0300 Clostridium novyi NT sulfatase YP_878798.1 1984205 R 386415 CDS YP_878799.1 118444553 4540948 complement(1985763..1987493) 1 NC_008593.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 1987493 4540948 NT01CX_0301 Clostridium novyi NT symporter YidK YP_878799.1 1985763 R 386415 CDS YP_878800.1 118443913 4540949 1987900..1988628 1 NC_008593.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1988628 4540949 NT01CX_0302 Clostridium novyi NT GntR family transcriptional regulator YP_878800.1 1987900 D 386415 CDS YP_878801.1 118443733 4540950 complement(1988625..1988834) 1 NC_008593.1 hypothetical protein 1988834 4540950 NT01CX_0303 Clostridium novyi NT hypothetical protein YP_878801.1 1988625 R 386415 CDS YP_878802.1 118444884 4540951 1989109..1989516 1 NC_008593.1 identified by match to protein family HMM TIGR01909; hypothetical protein 1989516 4540951 NT01CX_0304 Clostridium novyi NT hypothetical protein YP_878802.1 1989109 D 386415 CDS YP_878803.1 118444885 4540952 complement(1989560..1991137) 1 NC_008593.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter 1991137 4540952 NT01CX_0305 Clostridium novyi NT glycine betaine transporter YP_878803.1 1989560 R 386415 CDS YP_878804.1 118444886 4540953 1991342..1991974 1 NC_008593.1 identified by match to protein family HMM PF02080; hypothetical protein 1991974 4540953 NT01CX_0306 Clostridium novyi NT hypothetical protein YP_878804.1 1991342 D 386415 CDS YP_878805.1 118444887 4540954 complement(1992062..1993321) 1 NC_008593.1 identified by match to protein family HMM PF04143; transporter 1993321 4540954 NT01CX_0307 Clostridium novyi NT transporter YP_878805.1 1992062 R 386415 CDS YP_878806.1 118444548 4540955 complement(1993386..1995086) 1 NC_008593.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase family protein 1995086 4540955 NT01CX_0308 Clostridium novyi NT pyridine nucleotide-disulfide oxidoreductase family protein YP_878806.1 1993386 R 386415 CDS YP_878807.1 118444888 4540956 complement(1995079..1996422) 1 NC_008593.1 identified by match to protein family HMM PF01235; sodium:alanine symporter family protein 1996422 4540956 NT01CX_0309 Clostridium novyi NT sodium:alanine symporter family protein YP_878807.1 1995079 R 386415 CDS YP_878808.1 118443981 4540957 1996699..1997592 1 NC_008593.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1997592 4540957 NT01CX_0310 Clostridium novyi NT LysR family transcriptional regulator YP_878808.1 1996699 D 386415 CDS YP_878809.1 118444433 4540958 complement(1997639..1998166) 1 NC_008593.1 identified by match to protein family HMM PF04143; YeeE/YedE family protein 1998166 4540958 NT01CX_0311 Clostridium novyi NT YeeE/YedE family protein YP_878809.1 1997639 R 386415 CDS YP_878810.1 118444889 4540959 complement(1998183..1998410) 1 NC_008593.1 identified by match to protein family HMM PF01206; hypothetical protein 1998410 4540959 NT01CX_0312 Clostridium novyi NT hypothetical protein YP_878810.1 1998183 R 386415 CDS YP_878811.1 118444890 4540960 complement(1998432..1999112) 1 NC_008593.1 identified by match to protein family HMM PF04143; transporter 1999112 4540960 NT01CX_0313 Clostridium novyi NT transporter YP_878811.1 1998432 R 386415 CDS YP_878812.1 118444891 4540961 complement(1999300..1999515) 1 NC_008593.1 hypothetical protein 1999515 4540961 NT01CX_0314 Clostridium novyi NT hypothetical protein YP_878812.1 1999300 R 386415 CDS YP_878813.1 118444645 4540962 1999741..1999893 1 NC_008593.1 hypothetical protein 1999893 4540962 NT01CX_0315 Clostridium novyi NT hypothetical protein YP_878813.1 1999741 D 386415 CDS YP_878814.1 118444892 4540963 complement(1999949..2001661) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2001661 4540963 NT01CX_0316 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878814.1 1999949 R 386415 CDS YP_878815.1 118444115 4540964 complement(2001975..2002184) 1 NC_008593.1 hypothetical protein 2002184 4540964 NT01CX_0317 Clostridium novyi NT hypothetical protein YP_878815.1 2001975 R 386415 CDS YP_878816.1 118444893 4540965 complement(2002351..2002641) 1 NC_008593.1 hypothetical protein 2002641 4540965 NT01CX_0318 Clostridium novyi NT hypothetical protein YP_878816.1 2002351 R 386415 CDS YP_878817.1 118444894 4539796 complement(2002750..2003163) 1 NC_008593.1 hypothetical protein 2003163 4539796 NT01CX_0319 Clostridium novyi NT hypothetical protein YP_878817.1 2002750 R 386415 CDS YP_878818.1 118444895 4539797 complement(2003174..2004043) 1 NC_008593.1 sporulation initiation inhibitor protein soj 2004043 4539797 NT01CX_0320 Clostridium novyi NT sporulation initiation inhibitor protein soj YP_878818.1 2003174 R 386415 CDS YP_878819.1 118442893 4539798 complement(2004267..2006771) 1 NC_008593.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2006771 4539798 NT01CX_0321 Clostridium novyi NT helicase YP_878819.1 2004267 R 386415 CDS YP_878820.1 118444896 4539799 2006864..2007175 1 NC_008593.1 hypothetical protein 2007175 4539799 NT01CX_0322 Clostridium novyi NT hypothetical protein YP_878820.1 2006864 D 386415 CDS YP_878821.1 118444897 4539800 complement(2007371..2009323) 1 NC_008593.1 hypothetical protein 2009323 4539800 NT01CX_0323 Clostridium novyi NT hypothetical protein YP_878821.1 2007371 R 386415 CDS YP_878822.1 118443664 4539801 2009298..2009462 1 NC_008593.1 hypothetical protein 2009462 4539801 NT01CX_0324 Clostridium novyi NT hypothetical protein YP_878822.1 2009298 D 386415 CDS YP_878823.1 118444215 4539802 2009517..2009939 1 NC_008593.1 hypothetical protein 2009939 4539802 NT01CX_0325 Clostridium novyi NT hypothetical protein YP_878823.1 2009517 D 386415 CDS YP_878824.1 118444898 4539803 2009996..2011084 1 NC_008593.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2011084 4539803 NT01CX_0326 Clostridium novyi NT RND family efflux transporter MFP subunit YP_878824.1 2009996 D 386415 CDS YP_878825.1 118444637 4539804 2011081..2011761 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2011761 4539804 NT01CX_0327 Clostridium novyi NT ABC transporter ATP-binding protein YP_878825.1 2011081 D 386415 CDS YP_878826.1 118444520 4539805 2011758..2012942 1 NC_008593.1 identified by match to protein family HMM PF02687; ABC transporter permease 2012942 4539805 NT01CX_0328 Clostridium novyi NT ABC transporter permease YP_878826.1 2011758 D 386415 CDS YP_878827.1 118444899 4539806 2013167..2013634 1 NC_008593.1 hypothetical protein 2013634 4539806 NT01CX_0329 Clostridium novyi NT hypothetical protein YP_878827.1 2013167 D 386415 CDS YP_878828.1 118444900 4539807 complement(2013693..2015090) 1 NC_008593.1 hypothetical protein 2015090 4539807 NT01CX_0330 Clostridium novyi NT hypothetical protein YP_878828.1 2013693 R 386415 CDS YP_878829.1 118443530 4539808 2015297..2016136 1 NC_008593.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; SACPA operon antiterminator 2016136 sacT 4539808 sacT Clostridium novyi NT SACPA operon antiterminator YP_878829.1 2015297 D 386415 CDS YP_878830.1 118444901 4539809 2016439..2018418 1 NC_008593.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system transporter subunit IIABC 2018418 4539809 NT01CX_0332 Clostridium novyi NT PTS system transporter subunit IIABC YP_878830.1 2016439 D 386415 CDS YP_878831.1 118444503 4539810 2018439..2018681 1 NC_008593.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr (histidine-containing protein) 2018681 4539810 NT01CX_0333 Clostridium novyi NT phosphocarrier protein HPr (histidine-containing protein) YP_878831.1 2018439 D 386415 CDS YP_878832.1 118443596 4539811 2018719..2020422 1 NC_008593.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 2020422 ptsI 4539811 ptsI Clostridium novyi NT phosphoenolpyruvate-protein phosphotransferase YP_878832.1 2018719 D 386415 CDS YP_878833.1 118444154 4539812 complement(2020473..2022659) 1 NC_008593.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2022659 4539812 NT01CX_0335 Clostridium novyi NT DNA topoisomerase III YP_878833.1 2020473 R 386415 CDS YP_878834.1 118444902 4539813 complement(2022705..2024393) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; deoxyguanosinetriphosphate triphosphohydrolase 2024393 4539813 NT01CX_0336 Clostridium novyi NT deoxyguanosinetriphosphate triphosphohydrolase YP_878834.1 2022705 R 386415 CDS YP_878835.1 118444161 4539814 2024823..2026259 1 NC_008593.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2026259 proS 4539814 proS Clostridium novyi NT prolyl-tRNA synthetase YP_878835.1 2024823 D 386415 CDS YP_878836.1 118443776 4539815 complement(2026397..2026882) 1 NC_008593.1 identified by match to protein family HMM PF06177; citrulline cluster-linked gene 2026882 4539815 NT01CX_0338 Clostridium novyi NT citrulline cluster-linked gene YP_878836.1 2026397 R 386415 CDS YP_878837.1 118444903 4539570 complement(2027200..2027766) 1 NC_008593.1 identified by match to protein family HMM PF06962; rRNA methylase 2027766 4539570 NT01CX_0339 Clostridium novyi NT rRNA methylase YP_878837.1 2027200 R 386415 CDS YP_878839.1 118444905 4539575 complement(2033086..2034165) 1 NC_008593.1 identified by match to protein family HMM PF00107; 2,3-butanediol dehydrogenase 2034165 4539575 NT01CX_0344 Clostridium novyi NT 2,3-butanediol dehydrogenase YP_878839.1 2033086 R 386415 CDS YP_878840.1 118444906 4539576 complement(2034360..2036339) 1 NC_008593.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; aco operon expression regulatory protein 2036339 4539576 NT01CX_0345 Clostridium novyi NT aco operon expression regulatory protein YP_878840.1 2034360 R 386415 CDS YP_878841.1 118443718 4539580 complement(2036993..2037544) 1 NC_008593.1 identified by match to protein family HMM PF01661; Appr-1-p processing enzyme family protein 2037544 4539580 NT01CX_0349 Clostridium novyi NT Appr-1-p processing enzyme family protein YP_878841.1 2036993 R 386415 CDS YP_878842.1 118444907 4539581 2037842..2038495 1 NC_008593.1 identified by match to protein family HMM PF01464; lytic murein transglycosylase 2038495 4539581 NT01CX_0350 Clostridium novyi NT lytic murein transglycosylase YP_878842.1 2037842 D 386415 CDS YP_878843.1 118442936 4539582 complement(2038606..2039430) 1 NC_008593.1 hypothetical protein 2039430 4539582 NT01CX_0351 Clostridium novyi NT hypothetical protein YP_878843.1 2038606 R 386415 CDS YP_878844.1 118444908 4541344 complement(2039457..2040431) 1 NC_008593.1 hypothetical protein 2040431 4541344 NT01CX_0352 Clostridium novyi NT hypothetical protein YP_878844.1 2039457 R 386415 CDS YP_878845.1 118442976 4541345 complement(2040571..2040738) 1 NC_008593.1 hypothetical protein 2040738 4541345 NT01CX_0353 Clostridium novyi NT hypothetical protein YP_878845.1 2040571 R 386415 CDS YP_878846.1 118444909 4541346 complement(2040892..2042208) 1 NC_008593.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 2042208 4541346 NT01CX_0354 Clostridium novyi NT metallo-beta-lactamase superfamily protein YP_878846.1 2040892 R 386415 CDS YP_878847.1 118444910 4541347 complement(2042239..2042979) 1 NC_008593.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2042979 fabG 4541347 fabG Clostridium novyi NT 3-ketoacyl-ACP reductase YP_878847.1 2042239 R 386415 CDS YP_878848.1 118444911 4541348 complement(2043009..2043530) 1 NC_008593.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2043530 cobO 4541348 cobO Clostridium novyi NT cob(I)yrinic acid a,c-diamide adenosyltransferase YP_878848.1 2043009 R 386415 CDS YP_878849.1 118444912 4541349 complement(2043666..2044310) 1 NC_008593.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 2044310 trmB 4541349 trmB Clostridium novyi NT tRNA (guanine-N(7)-)-methyltransferase YP_878849.1 2043666 R 386415 CDS YP_878850.1 118444913 4541350 complement(2044341..2045015) 1 NC_008593.1 identified by match to protein family HMM PF02163; sterol-regulatory element binding protein (SREBP) site 2 protease 2045015 4541350 NT01CX_0358 Clostridium novyi NT sterol-regulatory element binding protein (SREBP) site 2 protease YP_878850.1 2044341 R 386415 CDS YP_878851.1 118444914 4541351 complement(2045120..2046337) 1 NC_008593.1 hypothetical protein 2046337 4541351 NT01CX_0359 Clostridium novyi NT hypothetical protein YP_878851.1 2045120 R 386415 CDS YP_878852.1 118444915 4541352 complement(2046350..2047207) 1 NC_008593.1 hypothetical protein 2047207 4541352 NT01CX_0360 Clostridium novyi NT hypothetical protein YP_878852.1 2046350 R 386415 CDS YP_878853.1 118444916 4541353 complement(2047522..2048967) 1 NC_008593.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-like transcriptional attenuator 2048967 4541353 NT01CX_0361 Clostridium novyi NT cell envelope-like transcriptional attenuator YP_878853.1 2047522 R 386415 CDS YP_878854.1 118443079 4541354 complement(2049083..2050459) 1 NC_008593.1 identified by match to protein family HMM PF02562; PhoH family protein 2050459 4541354 NT01CX_0362 Clostridium novyi NT PhoH family protein YP_878854.1 2049083 R 386415 CDS YP_878855.1 118444681 4541355 2050639..2051058 1 NC_008593.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2051058 4541355 NT01CX_0363 Clostridium novyi NT FUR family transcriptional regulator YP_878855.1 2050639 D 386415 CDS YP_878856.1 118444022 4541356 2051169..2052128 1 NC_008593.1 hypothetical protein 2052128 4541356 NT01CX_0364 Clostridium novyi NT hypothetical protein YP_878856.1 2051169 D 386415 CDS YP_878857.1 118444917 4541357 complement(2052388..2053050) 1 NC_008593.1 hypothetical protein 2053050 4541357 NT01CX_0365 Clostridium novyi NT hypothetical protein YP_878857.1 2052388 R 386415 CDS YP_878858.1 118444918 4541358 complement(2053416..2053913) 1 NC_008593.1 hypothetical protein 2053913 4541358 NT01CX_0366 Clostridium novyi NT hypothetical protein YP_878858.1 2053416 R 386415 CDS YP_878859.1 118444919 4541359 complement(2054098..2054700) 1 NC_008593.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2054700 engB 4541359 engB Clostridium novyi NT ribosome biogenesis GTP-binding protein YsxC YP_878859.1 2054098 R 386415 CDS YP_878860.1 118444920 4541360 complement(2054705..2057020) 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 2057020 4541360 NT01CX_0368 Clostridium novyi NT ATP-dependent protease La YP_878860.1 2054705 R 386415 CDS YP_878861.1 118443778 4541361 complement(2057128..2058774) 1 NC_008593.1 identified by match to protein family HMM PF00004; match to protein family HMM PF05362; Lon-like ATP-dependent protease 2058774 4541361 NT01CX_0369 Clostridium novyi NT Lon-like ATP-dependent protease YP_878861.1 2057128 R 386415 CDS YP_878862.1 118443245 4541362 complement(2059011..2060306) 1 NC_008593.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2060306 clpX 4541362 clpX Clostridium novyi NT ATP-dependent protease ATP-binding subunit ClpX YP_878862.1 2059011 R 386415 CDS YP_878863.1 118444381 4541363 complement(2060326..2060913) 1 NC_008593.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2060913 clpP 4541363 clpP Clostridium novyi NT ATP-dependent Clp protease proteolytic subunit YP_878863.1 2060326 R 386415 CDS YP_878864.1 118444921 4540725 complement(2061084..2062382) 1 NC_008593.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2062382 tig 4540725 tig Clostridium novyi NT trigger factor YP_878864.1 2061084 R 386415 CDS YP_878865.1 118443541 4540726 complement(2062553..2063332) 1 NC_008593.1 identified by match to protein family HMM PF01261; AP endonuclease 2063332 4540726 NT01CX_0373 Clostridium novyi NT AP endonuclease YP_878865.1 2062553 R 386415 CDS YP_878866.1 118444922 4540727 complement(2063353..2064171) 1 NC_008593.1 Includes: Dihydroneopterinaldolase (DHNA); 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; bifunctional folate synthesis protein 2064171 4540727 NT01CX_0374 Clostridium novyi NT bifunctional folate synthesis protein YP_878866.1 2063353 R 386415 CDS YP_878867.1 118444923 4540728 complement(2064185..2064997) 1 NC_008593.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2064997 folP 4540728 folP Clostridium novyi NT dihydropteroate synthase YP_878867.1 2064185 R 386415 CDS YP_878868.1 118444924 4540729 complement(2065032..2065511) 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD superfamily hydrolase 2065511 4540729 NT01CX_0376 Clostridium novyi NT HD superfamily hydrolase YP_878868.1 2065032 R 386415 CDS YP_878869.1 118443646 4540730 complement(2065527..2066084) 1 NC_008593.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2066084 folE 4540730 folE Clostridium novyi NT GTP cyclohydrolase I YP_878869.1 2065527 R 386415 CDS YP_878870.1 118444925 4540731 complement(2066134..2066943) 1 NC_008593.1 identified by match to protein family HMM PF01063; 4-amino-4-deoxychorismate lyase 2066943 4540731 NT01CX_0378 Clostridium novyi NT 4-amino-4-deoxychorismate lyase YP_878870.1 2066134 R 386415 CDS YP_878871.1 118444926 4540732 complement(2066965..2068335) 1 NC_008593.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; anthranilate synthase component I 2068335 4540732 NT01CX_0379 Clostridium novyi NT anthranilate synthase component I YP_878871.1 2066965 R 386415 CDS YP_878872.1 118443589 4540733 complement(2068329..2068922) 1 NC_008593.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 2068922 4540733 NT01CX_0380 Clostridium novyi NT anthranilate synthase component II YP_878872.1 2068329 R 386415 CDS YP_878873.1 118444927 4540734 complement(2069089..2069859) 1 NC_008593.1 hypothetical protein 2069859 4540734 NT01CX_0381 Clostridium novyi NT hypothetical protein YP_878873.1 2069089 R 386415 CDS YP_878874.1 118444928 4540735 complement(2070038..2073229) 1 NC_008593.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2073229 carB 4540735 carB Clostridium novyi NT carbamoyl phosphate synthase large subunit YP_878874.1 2070038 R 386415 CDS YP_878875.1 118443293 4540736 complement(2073250..2074308) 1 NC_008593.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2074308 carA 4540736 carA Clostridium novyi NT carbamoyl phosphate synthase small subunit YP_878875.1 2073250 R 386415 CDS YP_878876.1 118443556 4540737 complement(2074876..2075808) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase 2075808 pflC 4540737 pflC Clostridium novyi NT pyruvate formate-lyase YP_878876.1 2074876 R 386415 CDS YP_878877.1 118444929 4540738 complement(2075890..2078301) 1 NC_008593.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 2078301 4540738 NT01CX_0385 Clostridium novyi NT pyruvate formate-lyase YP_878877.1 2075890 R 386415 CDS YP_878878.1 118444930 4540739 complement(2078534..2079274) 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; transcriptional regulator 2079274 4540739 NT01CX_0386 Clostridium novyi NT transcriptional regulator YP_878878.1 2078534 R 386415 CDS YP_878879.1 118444931 4540740 complement(2079284..2080345) 1 NC_008593.1 identified by match to protein family HMM PF02518; sensor histidine kinase 2080345 4540740 NT01CX_0387 Clostridium novyi NT sensor histidine kinase YP_878879.1 2079284 R 386415 CDS YP_878880.1 118444932 4540741 2080719..2081249 1 NC_008593.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2081249 lepB 4540741 lepB Clostridium novyi NT signal peptidase I YP_878880.1 2080719 D 386415 CDS YP_878881.1 118444933 4540742 2081361..2082176 1 NC_008593.1 hypothetical protein 2082176 4540742 NT01CX_0389 Clostridium novyi NT hypothetical protein YP_878881.1 2081361 D 386415 CDS YP_878882.1 118444934 4540743 complement(2082223..2082795) 1 NC_008593.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2082795 pyrE 4540743 pyrE Clostridium novyi NT orotate phosphoribosyltransferase YP_878882.1 2082223 R 386415 CDS YP_878883.1 118442862 4540595 complement(2082941..2083873) 1 NC_008593.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 2083873 4540595 NT01CX_0391 Clostridium novyi NT dihydroorotate dehydrogenase 1B YP_878883.1 2082941 R 386415 CDS YP_878884.1 118444935 4540596 complement(2083830..2084564) 1 NC_008593.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 2084564 4540596 NT01CX_0392 Clostridium novyi NT dihydroorotate dehydrogenase electron transfer subunit YP_878884.1 2083830 R 386415 CDS YP_878885.1 118444936 4540597 complement(2084570..2085433) 1 NC_008593.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2085433 pyrF 4540597 pyrF Clostridium novyi NT orotidine 5'-phosphate decarboxylase YP_878885.1 2084570 R 386415 CDS YP_878886.1 118444937 4540598 complement(2085445..2086638) 1 NC_008593.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 2086638 4540598 NT01CX_0394 Clostridium novyi NT dihydroorotase YP_878886.1 2085445 R 386415 CDS YP_878887.1 118444329 4540599 complement(2086639..2087559) 1 NC_008593.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2087559 pyrB 4540599 pyrB Clostridium novyi NT aspartate carbamoyltransferase catalytic subunit YP_878887.1 2086639 R 386415 CDS YP_878888.1 118444938 4540600 complement(2088065..2089504) 1 NC_008593.1 ISBma2, transposase 2089504 4540600 NT01CX_0396 Clostridium novyi NT ISBma2, transposase YP_878888.1 2088065 R 386415 CDS YP_878889.1 118444939 4540601 complement(2089945..2091309) 1 NC_008593.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; transcriptional regulator 2091309 4540601 NT01CX_0397 Clostridium novyi NT transcriptional regulator YP_878889.1 2089945 R 386415 CDS YP_878890.1 118444940 4540602 complement(2091472..2092413) 1 NC_008593.1 identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 2092413 rbsC 4540602 rbsC Clostridium novyi NT branched chain amino acid ABC transporter permease YP_878890.1 2091472 R 386415 CDS YP_878891.1 118444137 4540603 complement(2092416..2093510) 1 NC_008593.1 identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 2093510 rbsC 4540603 rbsC Clostridium novyi NT branched chain amino acid ABC transporter permease YP_878891.1 2092416 R 386415 CDS YP_878892.1 118444941 4540604 complement(2093503..2095035) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2095035 rbsA 4540604 rbsA Clostridium novyi NT ABC transporter ATP-binding protein YP_878892.1 2093503 R 386415 CDS YP_878893.1 118444942 4540605 complement(2095022..2096140) 1 NC_008593.1 identified by match to protein family HMM PF02608; Bmp family membrane protein 2096140 4540605 NT01CX_0401 Clostridium novyi NT Bmp family membrane protein YP_878893.1 2095022 R 386415 CDS YP_878894.1 118443716 4540606 complement(2096173..2096745) 1 NC_008593.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 2096745 4540606 NT01CX_0402 Clostridium novyi NT xanthine phosphoribosyltransferase YP_878894.1 2096173 R 386415 CDS YP_878895.1 118444943 4540607 complement(2097129..2098391) 1 NC_008593.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 2098391 4540607 NT01CX_0403 Clostridium novyi NT sodium:dicarboxylate symporter family protein YP_878895.1 2097129 R 386415 CDS YP_878896.1 118444944 4539872 complement(2100410..2101009) 1 NC_008593.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2101009 rdgB 4539872 rdgB Clostridium novyi NT deoxyribonucleotide triphosphate pyrophosphatase YP_878896.1 2100410 R 386415 CDS YP_878897.1 118444945 4541583 complement(2101042..2102016) 1 NC_008593.1 identified by match to protein family HMM PF02769; hydrogenase maturation factor 2102016 hypE 4541583 hypE Clostridium novyi NT hydrogenase maturation factor YP_878897.1 2101042 R 386415 CDS YP_878898.1 118443150 4541584 2102107..2103483 1 NC_008593.1 hypothetical protein 2103483 4541584 NT01CX_0427 Clostridium novyi NT hypothetical protein YP_878898.1 2102107 D 386415 CDS YP_878899.1 118444946 4541585 complement(2103480..2105057) 1 NC_008593.1 peptide ABC transporter substrate-binding protein 2105057 4541585 NT01CX_0428 Clostridium novyi NT peptide ABC transporter substrate-binding protein YP_878899.1 2103480 R 386415 CDS YP_878900.1 118444947 4541586 complement(2105157..2105558) 1 NC_008593.1 hypothetical protein 2105558 4541586 NT01CX_0429 Clostridium novyi NT hypothetical protein YP_878900.1 2105157 R 386415 CDS YP_878901.1 118444129 4541587 complement(2105775..2107202) 1 NC_008593.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 2107202 gatB 4541587 gatB Clostridium novyi NT aspartyl/glutamyl-tRNA amidotransferase subunit B YP_878901.1 2105775 R 386415 CDS YP_878902.1 118444948 4541588 complement(2107221..2108678) 1 NC_008593.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 2108678 gatA 4541588 gatA Clostridium novyi NT aspartyl/glutamyl-tRNA amidotransferase subunit A YP_878902.1 2107221 R 386415 CDS YP_878903.1 118443290 4541589 complement(2108695..2108979) 1 NC_008593.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2108979 gatC 4541589 gatC Clostridium novyi NT aspartyl/glutamyl-tRNA amidotransferase subunit C YP_878903.1 2108695 R 386415 CDS YP_878904.1 118444949 4541590 complement(2109080..2110057) 1 NC_008593.1 identified by match to protein family HMM TIGR01921; diaminopimelate dehydrogenase 2110057 4541590 NT01CX_0433 Clostridium novyi NT diaminopimelate dehydrogenase YP_878904.1 2109080 R 386415 CDS YP_878905.1 118444950 4541591 complement(2110556..2112550) 1 NC_008593.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2112550 ligA 4541591 ligA Clostridium novyi NT NAD-dependent DNA ligase LigA YP_878905.1 2110556 R 386415 CDS YP_878906.1 118443009 4541592 complement(2112649..2114931) 1 NC_008593.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 2114931 pcrA 4541592 pcrA Clostridium novyi NT ATP-dependent DNA helicase PcrA YP_878906.1 2112649 R 386415 CDS YP_878907.1 118444951 4541593 complement(2114962..2115261) 1 NC_008593.1 identified by match to protein family HMM PF01371; trp operon repressor 2115261 4541593 NT01CX_0436 Clostridium novyi NT trp operon repressor YP_878907.1 2114962 R 386415 CDS YP_878908.1 118444952 4541594 complement(2115742..2116458) 1 NC_008593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase family protein 2116458 4541594 NT01CX_0437 Clostridium novyi NT RNA pseudouridylate synthase family protein YP_878908.1 2115742 R 386415 CDS YP_878909.1 118444953 4541595 complement(2116544..2118619) 1 NC_008593.1 identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein 2118619 4541595 NT01CX_0438 Clostridium novyi NT triple tyrosine motif-containing protein YP_878909.1 2116544 R 386415 CDS YP_878910.1 118444954 4541596 2118799..2120949 1 NC_008593.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 2120949 pulA 4541596 pulA Clostridium novyi NT pullulanase YP_878910.1 2118799 D 386415 CDS YP_878911.1 118443112 4541597 complement(2120958..2121407) 1 NC_008593.1 identified by match to protein family HMM PF02639; hypothetical protein 2121407 4541597 NT01CX_0440 Clostridium novyi NT hypothetical protein YP_878911.1 2120958 R 386415 CDS YP_878912.1 118444955 4541598 complement(2121529..2122881) 1 NC_008593.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2122881 pgi 4541598 pgi Clostridium novyi NT glucose-6-phosphate isomerase YP_878912.1 2121529 R 386415 CDS YP_878913.1 118444956 4541599 complement(2122979..2123236) 1 NC_008593.1 hypothetical protein 2123236 4541599 NT01CX_0442 Clostridium novyi NT hypothetical protein YP_878913.1 2122979 R 386415 CDS YP_878914.1 118443348 4541600 2123103..2123969 1 NC_008593.1 similar to yxkH B. subtilis; identified by match to protein family HMM PF01522; xylanase/chitin deacetilase 2123969 4541600 NT01CX_0443 Clostridium novyi NT xylanase/chitin deacetilase YP_878914.1 2123103 D 386415 CDS YP_878915.1 118444957 4541601 2123990..2124655 1 NC_008593.1 identified by match to protein family HMM PF00515; hypothetical protein 2124655 4541601 NT01CX_0444 Clostridium novyi NT hypothetical protein YP_878915.1 2123990 D 386415 CDS YP_878916.1 118444694 4541602 2124867..2126111 1 NC_008593.1 identified by match to protein family HMM PF03572; hypothetical protein 2126111 4541602 NT01CX_0445 Clostridium novyi NT hypothetical protein YP_878916.1 2124867 D 386415 CDS YP_878917.1 118443098 4539893 2126241..2126882 1 NC_008593.1 identified by match to protein family HMM PF01126; heme oxygenase 2126882 4539893 NT01CX_0446 Clostridium novyi NT heme oxygenase YP_878917.1 2126241 D 386415 CDS YP_878918.1 118442911 4539894 complement(2126921..2127226) 1 NC_008593.1 hypothetical protein 2127226 4539894 NT01CX_0447 Clostridium novyi NT hypothetical protein YP_878918.1 2126921 R 386415 CDS YP_878919.1 118443430 4539895 complement(2127537..2128976) 1 NC_008593.1 ISBma2, transposase 2128976 4539895 NT01CX_0448 Clostridium novyi NT ISBma2, transposase YP_878919.1 2127537 R 386415 CDS YP_878920.1 118444958 4539896 complement(2129147..2129956) 1 NC_008593.1 identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; cof family hydrolase 2129956 4539896 NT01CX_0449 Clostridium novyi NT cof family hydrolase YP_878920.1 2129147 R 386415 CDS YP_878921.1 118444472 4539897 complement(2130025..2130483) 1 NC_008593.1 hypothetical protein 2130483 4539897 NT01CX_0450 Clostridium novyi NT hypothetical protein YP_878921.1 2130025 R 386415 CDS YP_878922.1 118444959 4539898 2131091..2131729 1 NC_008593.1 identified by match to protein family HMM PF01381; transcriptional regulator 2131729 4539898 NT01CX_0451 Clostridium novyi NT transcriptional regulator YP_878922.1 2131091 D 386415 CDS YP_878923.1 118444960 4539899 complement(2132444..2133877) 1 NC_008593.1 hypothetical protein 2133877 4539899 NT01CX_0452 Clostridium novyi NT hypothetical protein YP_878923.1 2132444 R 386415 CDS YP_878924.1 118444961 4539900 complement(2134748..2135380) 1 NC_008593.1 phage integrase family site specific recombinase 2135380 4539900 NT01CX_0453 Clostridium novyi NT phage integrase family site specific recombinase YP_878924.1 2134748 R 386415 CDS YP_878925.1 118444063 4539901 complement(2135352..2135621) 1 NC_008593.1 hypothetical protein 2135621 4539901 NT01CX_0454 Clostridium novyi NT hypothetical protein YP_878925.1 2135352 R 386415 CDS YP_878926.1 118444962 4539902 complement(2135614..2135823) 1 NC_008593.1 hypothetical protein 2135823 4539902 NT01CX_0455 Clostridium novyi NT hypothetical protein YP_878926.1 2135614 R 386415 CDS YP_878927.1 118444963 4539903 complement(2136400..2136525) 1 NC_008593.1 hypothetical protein 2136525 4539903 NT01CX_0456 Clostridium novyi NT hypothetical protein YP_878927.1 2136400 R 386415 CDS YP_878928.1 118444360 4539904 complement(2136759..2138324) 1 NC_008593.1 ATP-dependent Clp protease, ATPase subunit 2138324 4539904 NT01CX_0457 Clostridium novyi NT ATP-dependent Clp protease, ATPase subunit YP_878928.1 2136759 R 386415 CDS YP_878929.1 118444964 4539905 complement(2138326..2139453) 1 NC_008593.1 hypothetical protein 2139453 4539905 NT01CX_0458 Clostridium novyi NT hypothetical protein YP_878929.1 2138326 R 386415 CDS YP_878930.1 118443777 4539906 complement(2139825..2141363) 1 NC_008593.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2141363 guaA 4539906 guaA Clostridium novyi NT GMP synthase YP_878930.1 2139825 R 386415 CDS YP_878931.1 118443278 4539907 complement(2141576..2143030) 1 NC_008593.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2143030 guaB 4539907 guaB Clostridium novyi NT inosine 5'-monophosphate dehydrogenase YP_878931.1 2141576 R 386415 CDS YP_878932.1 118444965 4539908 2143408..2144145 1 NC_008593.1 identified by match to protein family HMM PF01171; hypothetical protein 2144145 4539908 NT01CX_0461 Clostridium novyi NT hypothetical protein YP_878932.1 2143408 D 386415 CDS YP_878933.1 118444628 4539909 complement(2144215..2145846) 1 NC_008593.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2145846 groEL 4539909 groEL Clostridium novyi NT chaperonin GroEL YP_878933.1 2144215 R 386415 CDS YP_878934.1 118444966 4539910 complement(2145951..2146235) 1 NC_008593.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2146235 groES 4539910 groES Clostridium novyi NT co-chaperonin GroES YP_878934.1 2145951 R 386415 CDS YP_878935.1 118444967 4539911 complement(2146548..2148032) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; Fe-hydrogenase large subunit family protein 2148032 4539911 NT01CX_0464 Clostridium novyi NT Fe-hydrogenase large subunit family protein YP_878935.1 2146548 R 386415 CDS YP_878936.1 118444968 4541403 complement(2148211..2149089) 1 NC_008593.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; 8-oxoguanine DNA glycosylase 2149089 4541403 NT01CX_0465 Clostridium novyi NT 8-oxoguanine DNA glycosylase YP_878936.1 2148211 R 386415 CDS YP_878937.1 118444969 4541404 complement(2149332..2150720) 1 NC_008593.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2150720 gltA 4541404 gltA Clostridium novyi NT oxidoreductase YP_878937.1 2149332 R 386415 CDS YP_878938.1 118444970 4541405 complement(2150720..2151628) 1 NC_008593.1 identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha 2151628 4541405 NT01CX_0467 Clostridium novyi NT ferredoxin-NADP(+) reductase subunit alpha YP_878938.1 2150720 R 386415 CDS YP_878939.1 118444971 4541406 complement(2151823..2152989) 1 NC_008593.1 identified by match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase 2152989 4541406 NT01CX_0468 Clostridium novyi NT NADPH-dependent butanol dehydrogenase YP_878939.1 2151823 R 386415 CDS YP_878940.1 118442857 4541407 complement(2153232..2155127) 1 NC_008593.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; Signal-transduction and transcriptional-control protein 2155127 4541407 NT01CX_0469 Clostridium novyi NT Signal-transduction and transcriptional-control protein YP_878940.1 2153232 R 386415 CDS YP_878941.1 118443750 4541408 complement(2155289..2156137) 1 NC_008593.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 2156137 bhbD 4541408 bhbD Clostridium novyi NT 3-hydroxybutyryl-CoA dehydrogenase YP_878941.1 2155289 R 386415 CDS YP_878942.1 118444133 4541409 complement(2156242..2157249) 1 NC_008593.1 identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha 2157249 etfA 4541409 etfA Clostridium novyi NT electron transfer flavoprotein subunit alpha YP_878942.1 2156242 R 386415 CDS YP_878943.1 118444972 4541410 complement(2157281..2158060) 1 NC_008593.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 2158060 4541410 NT01CX_0472 Clostridium novyi NT electron transfer flavoprotein subunit beta YP_878943.1 2157281 R 386415 CDS YP_878944.1 118444538 4541411 complement(2158088..2159227) 1 NC_008593.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 2159227 4541411 NT01CX_0473 Clostridium novyi NT acyl-CoA dehydrogenase YP_878944.1 2158088 R 386415 CDS YP_878945.1 118444510 4541412 complement(2159257..2160042) 1 NC_008593.1 catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase 2160042 4541412 NT01CX_0474 Clostridium novyi NT 3-hydroxybutyryl-CoA dehydratase YP_878945.1 2159257 R 386415 CDS YP_878946.1 118444973 4541413 complement(2160245..2160877) 1 NC_008593.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2160877 4541413 NT01CX_0475 Clostridium novyi NT redox-sensing transcriptional repressor Rex YP_878946.1 2160245 R 386415 CDS YP_878947.1 118444974 4541414 2161271..2163184 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2163184 4541414 NT01CX_0476 Clostridium novyi NT ABC transporter ATP-binding protein YP_878947.1 2161271 D 386415 CDS YP_878948.1 118443714 4541415 complement(2163246..2164514) 1 NC_008593.1 identified by match to protein family HMM PF00496; peptide ABC transporter oligopeptide-binding protein 2164514 4541415 NT01CX_0477 Clostridium novyi NT peptide ABC transporter oligopeptide-binding protein YP_878948.1 2163246 R 386415 CDS YP_878949.1 118444975 4541416 complement(2164702..2165727) 1 NC_008593.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2165727 4541416 NT01CX_0478 Clostridium novyi NT DNA-binding/iron metalloprotein/AP endonuclease YP_878949.1 2164702 R 386415 CDS YP_878950.1 118444976 4541417 2165819..2166472 1 NC_008593.1 identified by match to protein family HMM PF05866; hypothetical protein 2166472 4541417 NT01CX_0479 Clostridium novyi NT hypothetical protein YP_878950.1 2165819 D 386415 CDS YP_878951.1 118444977 4541418 complement(2166493..2167497) 1 NC_008593.1 identified by match to protein family HMM PF00070; sarcosine oxidase alpha subunit 2167497 4541418 NT01CX_0480 Clostridium novyi NT sarcosine oxidase alpha subunit YP_878951.1 2166493 R 386415 CDS YP_878952.1 118442988 4541419 complement(2167591..2168121) 1 NC_008593.1 lipoprotein 2168121 4541419 NT01CX_0481 Clostridium novyi NT lipoprotein YP_878952.1 2167591 R 386415 CDS YP_878953.1 118442998 4541420 2168324..2169220 1 NC_008593.1 identified by match to protein family HMM PF01297; periplasmic solute binding protein 2169220 4541420 NT01CX_0482 Clostridium novyi NT periplasmic solute binding protein YP_878953.1 2168324 D 386415 CDS YP_878954.1 118444978 4541421 complement(2169279..2169800) 1 NC_008593.1 identified by match to protein family HMM PF02417; chromate transporter 2169800 4541421 NT01CX_0483 Clostridium novyi NT chromate transporter YP_878954.1 2169279 R 386415 CDS YP_878955.1 118444979 4541422 complement(2169787..2170269) 1 NC_008593.1 identified by match to protein family HMM PF02417; chromate transporter 2170269 4541422 NT01CX_0484 Clostridium novyi NT chromate transporter YP_878955.1 2169787 R 386415 CDS YP_878956.1 118444980 4541545 complement(2170489..2172207) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2172207 4541545 NT01CX_0485 Clostridium novyi NT methyl-accepting chemotaxis protein YP_878956.1 2170489 R 386415 CDS YP_878957.1 118444981 4541546 complement(2172499..2173641) 1 NC_008593.1 identified by match to protein family HMM PF00465; alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase 2173641 4541546 NT01CX_0486 Clostridium novyi NT alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase YP_878957.1 2172499 R 386415 CDS YP_878958.1 118443223 4541547 complement(2173677..2173955) 1 NC_008593.1 identified by match to protein family HMM PF03319; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 2173955 4541547 NT01CX_0487 Clostridium novyi NT ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_878958.1 2173677 R 386415 CDS YP_878959.1 118444982 4541548 complement(2173972..2175435) 1 NC_008593.1 acetaldehyde dehydrogenase / alcohol dehydrogenase-like protein 2175435 4541548 NT01CX_0488 Clostridium novyi NT acetaldehyde dehydrogenase / alcohol dehydrogenase-like protein YP_878959.1 2173972 R 386415 CDS YP_878960.1 118444605 4541549 complement(2175472..2176272) 1 NC_008593.1 phosphopantothenate--cysteine ligase 2176272 4541549 NT01CX_0489 Clostridium novyi NT phosphopantothenate--cysteine ligase YP_878960.1 2175472 R 386415 CDS YP_878961.1 118444069 4541550 complement(2176285..2177127) 1 NC_008593.1 ethanolamine utilization protein eutJ 2177127 4541550 NT01CX_0490 Clostridium novyi NT ethanolamine utilization protein eutJ YP_878961.1 2176285 R 386415 CDS YP_878962.1 118444983 4541551 complement(2177124..2177774) 1 NC_008593.1 identified by match to protein family HMM PF06130; hypothetical protein 2177774 4541551 NT01CX_0491 Clostridium novyi NT hypothetical protein YP_878962.1 2177124 R 386415 CDS YP_878963.1 118444984 4541552 complement(2177793..2178368) 1 NC_008593.1 similar to Salmonella typhimurium PduA protein; identified by match to protein family HMM PF00936; PduA protein-like protein 2178368 4541552 NT01CX_0492 Clostridium novyi NT PduA protein-like protein YP_878963.1 2177793 R 386415 CDS YP_878964.1 118444985 4541553 complement(2178472..2179329) 1 NC_008593.1 similar to Salmonella typhimurium PduB protein; identified by match to protein family HMM PF06000; PduB protein-like protein 2179329 4541553 NT01CX_0493 Clostridium novyi NT PduB protein-like protein YP_878964.1 2178472 R 386415 CDS YP_878965.1 118443961 4541554 complement(2179350..2179631) 1 NC_008593.1 identified by match to protein family HMM PF00936; microcompartment protein 2179631 4541554 NT01CX_0494 Clostridium novyi NT microcompartment protein YP_878965.1 2179350 R 386415 CDS YP_878966.1 118443631 4541555 2179806..2181017 1 NC_008593.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 2181017 4541555 NT01CX_0495 Clostridium novyi NT sensor histidine kinase YP_878966.1 2179806 D 386415 CDS YP_878967.1 118442922 4541556 2181038..2181775 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; two-component response regulator 2181775 4541556 NT01CX_0496 Clostridium novyi NT two-component response regulator YP_878967.1 2181038 D 386415 CDS YP_878968.1 118444986 4541557 complement(2181817..2182716) 1 NC_008593.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase 2182716 pflC 4541557 pflC Clostridium novyi NT pyruvate formate-lyase YP_878968.1 2181817 R 386415 CDS YP_878969.1 118444987 4541558 complement(2182788..2185340) 1 NC_008593.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 2185340 4541558 NT01CX_0498 Clostridium novyi NT pyruvate formate-lyase YP_878969.1 2182788 R 386415 CDS YP_878970.1 118444988 4541559 complement(2185599..2187038) 1 NC_008593.1 ISBma2, transposase 2187038 4541559 NT01CX_0499 Clostridium novyi NT ISBma2, transposase YP_878970.1 2185599 R 386415 CDS YP_878971.1 118444989 4541561 2187436..2188668 1 NC_008593.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; fused HD-GYP/HD-hydrolase domain-containing protein 2188668 4541561 NT01CX_0501 Clostridium novyi NT fused HD-GYP/HD-hydrolase domain-containing protein YP_878971.1 2187436 D 386415 CDS YP_878972.1 118443294 4541562 2188832..2189290 1 NC_008593.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 2189290 4541562 NT01CX_0502 Clostridium novyi NT hypothetical protein YP_878972.1 2188832 D 386415 CDS YP_878973.1 118443358 4541147 2189287..2190003 1 NC_008593.1 identified by match to protein family HMM PF00814; glycoprotease family protein 2190003 4541147 NT01CX_0503 Clostridium novyi NT glycoprotease family protein YP_878973.1 2189287 D 386415 CDS YP_878974.1 118444990 4541148 2189996..2190451 1 NC_008593.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2190451 rimI 4541148 rimI Clostridium novyi NT ribosomal-protein-alanine acetyltransferase YP_878974.1 2189996 D 386415 CDS YP_878975.1 118444991 4541149 complement(2190517..2191158) 1 NC_008593.1 hypothetical protein 2191158 4541149 NT01CX_0505 Clostridium novyi NT hypothetical protein YP_878975.1 2190517 R 386415 CDS YP_878976.1 118443081 4541150 complement(2191444..2193600) 1 NC_008593.1 identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 2193600 4541150 NT01CX_0506 Clostridium novyi NT S1 RNA-binding domain-containing protein YP_878976.1 2191444 R 386415 CDS YP_878977.1 118444992 4541151 complement(2193801..2194004) 1 NC_008593.1 hypothetical protein 2194004 4541151 NT01CX_0507 Clostridium novyi NT hypothetical protein YP_878977.1 2193801 R 386415 CDS YP_878978.1 118444993 4541152 complement(2194655..2195668) 1 NC_008593.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 2195668 prfB 4541152 prfB Clostridium novyi NT peptide chain release factor 2 YP_878978.1 2194655 R 386415 CDS YP_878979.1 118443805 4541153 complement(2195830..2198334) 1 NC_008593.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2198334 secA 4541153 secA Clostridium novyi NT preprotein translocase subunit SecA YP_878979.1 2195830 R 386415 CDS YP_878980.1 118444994 4541154 complement(2198546..2198689) 1 NC_008593.1 hypothetical protein 2198689 4541154 NT01CX_0510 Clostridium novyi NT hypothetical protein YP_878980.1 2198546 R 386415 CDS YP_878981.1 118444699 4541155 2198568..2199341 1 NC_008593.1 hypothetical protein 2199341 4541155 NT01CX_0511 Clostridium novyi NT hypothetical protein YP_878981.1 2198568 D 386415 CDS YP_878982.1 118444043 4541156 complement(2199370..2199906) 1 NC_008593.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 2199906 yfiA 4541156 yfiA Clostridium novyi NT ribosomal subunit interface protein YP_878982.1 2199370 R 386415 CDS YP_878983.1 118444213 4541157 complement(2200163..2200843) 1 NC_008593.1 competence protein F 2200843 comF 4541157 comF Clostridium novyi NT competence protein F YP_878983.1 2200163 R 386415 CDS YP_878984.1 118444995 4541158 complement(2200816..2201838) 1 NC_008593.1 hypothetical protein 2201838 4541158 NT01CX_0514 Clostridium novyi NT hypothetical protein YP_878984.1 2200816 R 386415 CDS YP_878985.1 118444996 4541159 complement(2201862..2204069) 1 NC_008593.1 identified by match to protein family HMM TIGR01448; recombinase D 2204069 4541159 NT01CX_0515 Clostridium novyi NT recombinase D YP_878985.1 2201862 R 386415 CDS YP_878986.1 118444997 4541160 complement(2204190..2205365) 1 NC_008593.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2205365 metK 4541160 metK Clostridium novyi NT S-adenosylmethionine synthetase YP_878986.1 2204190 R 386415 CDS YP_878987.1 118443752 4540520 2206333..2207052 1 NC_008593.1 identified by match to protein family HMM PF01171; hypothetical protein 2207052 4540520 NT01CX_0521 Clostridium novyi NT hypothetical protein YP_878987.1 2206333 D 386415 CDS YP_878988.1 118444998 4540521 2207148..2207699 1 NC_008593.1 identified by match to protein family HMM PF06866; hypothetical protein 2207699 4540521 NT01CX_0522 Clostridium novyi NT hypothetical protein YP_878988.1 2207148 D 386415 CDS YP_878989.1 118444999 4540522 complement(2207756..2208787) 1 NC_008593.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 2208787 4540522 NT01CX_0523 Clostridium novyi NT rod shape-determining protein Mbl YP_878989.1 2207756 R 386415 CDS YP_878990.1 118443007 4540523 complement(2208923..2209177) 1 NC_008593.1 stage III sporulation protein D 2209177 spoIIID 4540523 spoIIID Clostridium novyi NT stage III sporulation protein D YP_878990.1 2208923 R 386415 CDS YP_878991.1 118445000 4540524 complement(2209314..2210078) 1 NC_008593.1 identified by match to protein family HMM PF01551; membrane-associated protein 2210078 4540524 NT01CX_0525 Clostridium novyi NT membrane-associated protein YP_878991.1 2209314 R 386415 CDS YP_878992.1 118443824 4540525 complement(2210254..2211282) 1 NC_008593.1 sporulation protein SpoIID 2211282 4540525 NT01CX_0526 Clostridium novyi NT sporulation protein SpoIID YP_878992.1 2210254 R 386415 CDS YP_878993.1 118443328 4540526 complement(2211445..2212704) 1 NC_008593.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2212704 murA 4540526 murA Clostridium novyi NT UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_878993.1 2211445 R 386415 CDS YP_878994.1 118445001 4540527 complement(2212735..2213436) 1 NC_008593.1 hypothetical protein 2213436 4540527 NT01CX_0528 Clostridium novyi NT hypothetical protein YP_878994.1 2212735 R 386415 CDS YP_878995.1 118445002 4540528 complement(2213596..2213991) 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 2213991 atpC 4540528 atpC Clostridium novyi NT F0F1 ATP synthase subunit epsilon YP_878995.1 2213596 R 386415 CDS YP_878996.1 118445003 4540529 complement(2214009..2215403) 1 NC_008593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2215403 atpD 4540529 atpD Clostridium novyi NT F0F1 ATP synthase subunit beta YP_878996.1 2214009 R 386415 CDS YP_878997.1 118444337 4540530 complement(2215416..2216273) 1 NC_008593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2216273 atpG 4540530 atpG Clostridium novyi NT F0F1 ATP synthase subunit gamma YP_878997.1 2215416 R 386415 CDS YP_878998.1 118443884 4540531 complement(2216303..2217811) 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2217811 atpA 4540531 atpA Clostridium novyi NT F0F1 ATP synthase subunit alpha YP_878998.1 2216303 R 386415 CDS YP_878999.1 118445004 4540532 complement(2217833..2218369) 1 NC_008593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2218369 atpH 4540532 atpH Clostridium novyi NT F0F1 ATP synthase subunit delta YP_878999.1 2217833 R 386415 CDS YP_879000.1 118443791 4540533 complement(2218372..2218851) 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B 2218851 atpF 4540533 atpF Clostridium novyi NT F0F1 ATP synthase subunit B YP_879000.1 2218372 R 386415 CDS YP_879001.1 118445005 4540534 complement(2218898..2219152) 1 NC_008593.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2219152 4540534 NT01CX_0535 Clostridium novyi NT F0F1 ATP synthase subunit C YP_879001.1 2218898 R 386415 CDS YP_879002.1 118445006 4540535 complement(2219198..2219884) 1 NC_008593.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2219884 atpB 4540535 atpB Clostridium novyi NT F0F1 ATP synthase subunit A YP_879002.1 2219198 R 386415 CDS YP_879003.1 118443065 4540536 complement(2219908..2220276) 1 NC_008593.1 membrane protein in FoF1-type ATP synthase 2220276 4540536 NT01CX_0537 Clostridium novyi NT membrane protein in FoF1-type ATP synthase YP_879003.1 2219908 R 386415 CDS YP_879004.1 118445007 4540168 complement(2220728..2221906) 1 NC_008593.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2221906 4540168 NT01CX_0538 Clostridium novyi NT acetyl-CoA acetyltransferase YP_879004.1 2220728 R 386415 CDS YP_879005.1 118445008 4540169 complement(2222072..2223193) 1 NC_008593.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 2223193 4540169 NT01CX_0539 Clostridium novyi NT UDP-N-acetylglucosamine 2-epimerase YP_879005.1 2222072 R 386415 CDS YP_879006.1 118445009 4540170 complement(2223215..2224243) 1 NC_008593.1 identified by match to protein family HMM PF00953; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase 2224243 4540170 NT01CX_0540 Clostridium novyi NT undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase YP_879006.1 2223215 R 386415 CDS YP_879007.1 118445010 4540171 complement(2224268..2224756) 1 NC_008593.1 identified by match to protein family HMM PF00383; cytidine and deoxycytidylate deaminase family protein 2224756 4540171 NT01CX_0541 Clostridium novyi NT cytidine and deoxycytidylate deaminase family protein YP_879007.1 2224268 R 386415 CDS YP_879008.1 118445011 4540172 complement(2225000..2225629) 1 NC_008593.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2225629 upp 4540172 upp Clostridium novyi NT uracil phosphoribosyltransferase YP_879008.1 2225000 R 386415 CDS YP_879009.1 118445012 4540173 complement(2225689..2226138) 1 NC_008593.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2226138 rpiB 4540173 rpiB Clostridium novyi NT ribose-5-phosphate isomerase B YP_879009.1 2225689 R 386415 CDS YP_879010.1 118445013 4540174 complement(2226190..2226642) 1 NC_008593.1 identified by match to protein family HMM PF01451; protein-tyrosine-phosphatase 2226642 4540174 NT01CX_0544 Clostridium novyi NT protein-tyrosine-phosphatase YP_879010.1 2226190 R 386415 CDS YP_879011.1 118444234 4540175 complement(2226672..2227724) 1 NC_008593.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 2227724 4540175 NT01CX_0545 Clostridium novyi NT Sua5/YciO/YrdC/YwlC family protein YP_879011.1 2226672 R 386415 CDS YP_879012.1 118443369 4540176 complement(2227776..2228507) 1 NC_008593.1 identified by match to protein family HMM PF02535; zinc uptake transporter 2228507 4540176 NT01CX_0546 Clostridium novyi NT zinc uptake transporter YP_879012.1 2227776 R 386415 CDS YP_879013.1 118445014 4540177 complement(2228562..2229134) 1 NC_008593.1 hypothetical protein 2229134 4540177 NT01CX_0547 Clostridium novyi NT hypothetical protein YP_879013.1 2228562 R 386415 CDS YP_879014.1 118443694 4540178 complement(2229169..2230242) 1 NC_008593.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2230242 prfA 4540178 prfA Clostridium novyi NT peptide chain release factor 1 YP_879014.1 2229169 R 386415 CDS YP_879015.1 118445015 4540179 complement(2230371..2231225) 1 NC_008593.1 identified by match to protein family HMM TIGR00536; methyltransferase 2231225 4540179 NT01CX_0549 Clostridium novyi NT methyltransferase YP_879015.1 2230371 R 386415 CDS YP_879016.1 118443438 4540180 complement(2231260..2232279) 1 NC_008593.1 identified by match to protein family HMM PF07136; hypothetical protein 2232279 4540180 NT01CX_0550 Clostridium novyi NT hypothetical protein YP_879016.1 2231260 R 386415 CDS YP_879017.1 118443839 4540181 complement(2232319..2232915) 1 NC_008593.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2232915 4540181 NT01CX_0551 Clostridium novyi NT thymidine kinase YP_879017.1 2232319 R 386415 CDS YP_879018.1 118445016 4540182 2233108..2233317 1 NC_008593.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2233317 rpmE 4540182 rpmE Clostridium novyi NT 50S ribosomal protein L31 YP_879018.1 2233108 D 386415 CDS YP_879019.1 118445017 4540183 complement(2233342..2234769) 1 NC_008593.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2234769 rho 4540183 rho Clostridium novyi NT transcription termination factor Rho YP_879019.1 2233342 R 386415 CDS YP_879020.1 118445018 4540184 complement(2234960..2235304) 1 NC_008593.1 hypothetical protein 2235304 4540184 NT01CX_0554 Clostridium novyi NT hypothetical protein YP_879020.1 2234960 R 386415 CDS YP_879021.1 118445019 4540185 complement(2235487..2237088) 1 NC_008593.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2237088 pyrG 4540185 pyrG Clostridium novyi NT CTP synthetase YP_879021.1 2235487 R 386415 CDS YP_879022.1 118445020 4540186 complement(2237286..2237585) 1 NC_008593.1 hypothetical protein 2237585 4540186 NT01CX_0556 Clostridium novyi NT hypothetical protein YP_879022.1 2237286 R 386415 CDS YP_879023.1 118445021 4540187 complement(2237699..2238115) 1 NC_008593.1 hypothetical protein 2238115 4540187 NT01CX_0557 Clostridium novyi NT hypothetical protein YP_879023.1 2237699 R 386415 CDS YP_879024.1 118445022 4541384 complement(2238131..2239114) 1 NC_008593.1 hypothetical protein 2239114 4541384 NT01CX_0558 Clostridium novyi NT hypothetical protein YP_879024.1 2238131 R 386415 CDS YP_879025.1 118445023 4541385 complement(2239140..2240171) 1 NC_008593.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2240171 ddl 4541385 ddl Clostridium novyi NT D-alanyl-alanine synthetase A YP_879025.1 2239140 R 386415 CDS YP_879026.1 118445024 4541386 complement(2240384..2241742) 1 NC_008593.1 identified by match to protein family HMM PF03413; thermolysin metallopeptidase, propeptide 2241742 4541386 NT01CX_0560 Clostridium novyi NT thermolysin metallopeptidase, propeptide YP_879026.1 2240384 R 386415 CDS YP_879027.1 118445025 4541387 complement(2241828..2242463) 1 NC_008593.1 stage II sporulation protein R 2242463 4541387 NT01CX_0561 Clostridium novyi NT stage II sporulation protein R YP_879027.1 2241828 R 386415 CDS YP_879028.1 118444617 4541388 complement(2242633..2243823) 1 NC_008593.1 identified by match to protein family HMM PF05504; spore germination protein 2243823 4541388 NT01CX_0562 Clostridium novyi NT spore germination protein YP_879028.1 2242633 R 386415 CDS YP_879029.1 118445026 4541389 complement(2243813..2244913) 1 NC_008593.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2244913 4541389 NT01CX_0563 Clostridium novyi NT spore germination protein YP_879029.1 2243813 R 386415 CDS YP_879030.1 118445027 4541390 complement(2244935..2246404) 1 NC_008593.1 similar to Bacillus/Clostridium; identified by match to protein family HMM PF03323; GerA spore germination protein 2246404 4541390 NT01CX_0564 Clostridium novyi NT GerA spore germination protein YP_879030.1 2244935 R 386415 CDS YP_879031.1 118445028 4541391 complement(2246422..2246619) 1 NC_008593.1 hypothetical protein 2246619 4541391 NT01CX_0565 Clostridium novyi NT hypothetical protein YP_879031.1 2246422 R 386415 CDS YP_879032.1 118445029 4541392 complement(2246711..2247553) 1 NC_008593.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2247553 ipk 4541392 ipk Clostridium novyi NT 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_879032.1 2246711 R 386415 CDS YP_879033.1 118445030 4541393 complement(2247658..2249211) 1 NC_008593.1 identified by match to protein family HMM PF01476; LysM domain-containing protein 2249211 4541393 NT01CX_0567 Clostridium novyi NT LysM domain-containing protein YP_879033.1 2247658 R 386415 CDS YP_879034.1 118445031 4541394 complement(2249320..2249565) 1 NC_008593.1 identified by match to protein family HMM PF06257; VEG protein-like protein 2249565 4541394 NT01CX_0568 Clostridium novyi NT VEG protein-like protein YP_879034.1 2249320 R 386415 CDS YP_879035.1 118445032 4541395 complement(2249789..2250682) 1 NC_008593.1 identified by match to protein family HMM PF05582; hypothetical protein 2250682 4541395 NT01CX_0569 Clostridium novyi NT hypothetical protein YP_879035.1 2249789 R 386415 CDS YP_879036.1 118443813 4541396 complement(2250871..2251881) 1 NC_008593.1 spore coat protein 2251881 4541396 NT01CX_0570 Clostridium novyi NT spore coat protein YP_879036.1 2250871 R 386415 CDS YP_879037.1 118445033 4541397 2252009..2253130 1 NC_008593.1 identified by match to protein family HMM PF00534; mannosyltransferase 2253130 4541397 NT01CX_0571 Clostridium novyi NT mannosyltransferase YP_879037.1 2252009 D 386415 CDS YP_879038.1 118443692 4541398 complement(2253182..2254108) 1 NC_008593.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 2254108 cysK 4541398 cysK Clostridium novyi NT cysteine synthase A YP_879038.1 2253182 R 386415 CDS YP_879039.1 118443111 4541399 complement(2254279..2255070) 1 NC_008593.1 identified by match to protein family HMM PF06180; anaerobic cobalt chelatase 2255070 cbiK 4541399 cbiK Clostridium novyi NT anaerobic cobalt chelatase YP_879039.1 2254279 R 386415 CDS YP_879040.1 118445034 4541400 complement(2255054..2255833) 1 NC_008593.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2255833 cobK 4541400 cobK Clostridium novyi NT cobalt-precorrin-6x reductase YP_879040.1 2255054 R 386415 CDS YP_879041.1 118445035 4541401 complement(2255830..2256576) 1 NC_008593.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 2256576 cobJ 4541401 cobJ Clostridium novyi NT precorrin-3B C(17)-methyltransferase YP_879041.1 2255830 R 386415 CDS YP_879042.1 118443437 4541402 complement(2256626..2257660) 1 NC_008593.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2257660 cbiG 4541402 cbiG Clostridium novyi NT cobalamin biosynthesis protein CbiG YP_879042.1 2256626 R 386415 CDS YP_879043.1 118445036 4541295 complement(2257669..2258406) 1 NC_008593.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 2258406 cobM 4541295 cobM Clostridium novyi NT precorrin-4 C(11)-methyltransferase YP_879043.1 2257669 R 386415 CDS YP_879044.1 118445037 4541296 complement(2258417..2259082) 1 NC_008593.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2259082 cobI 4541296 cobI Clostridium novyi NT cobalt-precorrin-2 C(20)-methyltransferase YP_879044.1 2258417 R 386415 CDS YP_879045.1 118445038 4541297 complement(2259084..2259662) 1 NC_008593.1 precorrin-6B methylase/decarboxylase cbiT/cbiE 2259662 cbiT 4541297 cbiT Clostridium novyi NT precorrin-6B methylase/decarboxylase cbiT/cbiE YP_879045.1 2259084 R 386415 CDS YP_879046.1 118445039 4541298 complement(2259659..2260279) 1 NC_008593.1 identified by match to protein family HMM PF00590; precorrin-6B methylase/decarboxylase cbiT/cbiE 2260279 cbiE 4541298 cbiE Clostridium novyi NT precorrin-6B methylase/decarboxylase cbiT/cbiE YP_879046.1 2259659 R 386415 CDS YP_879047.1 118443869 4541299 complement(2260298..2261374) 1 NC_008593.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2261374 cbiD 4541299 cbiD Clostridium novyi NT cobalt-precorrin-6A synthase YP_879047.1 2260298 R 386415 CDS YP_879048.1 118445040 4541300 complement(2261396..2262019) 1 NC_008593.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 2262019 cbiC 4541300 cbiC Clostridium novyi NT precorrin-8X methylmutase YP_879048.1 2261396 R 386415 CDS YP_879049.1 118443028 4541301 complement(2262012..2263367) 1 NC_008593.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2263367 cobB 4541301 cobB Clostridium novyi NT cobyrinic acid a,c-diamide synthase YP_879049.1 2262012 R 386415 CDS YP_879050.1 118445041 4541302 complement(2263713..2264684) 1 NC_008593.1 spore coat protein 2264684 4541302 NT01CX_0584 Clostridium novyi NT spore coat protein YP_879050.1 2263713 R 386415 CDS YP_879051.1 118445042 4541303 complement(2264725..2265537) 1 NC_008593.1 spore coat protein 2265537 4541303 NT01CX_0585 Clostridium novyi NT spore coat protein YP_879051.1 2264725 R 386415 CDS YP_879052.1 118443220 4541304 complement(2265569..2266582) 1 NC_008593.1 spore coat protein 2266582 4541304 NT01CX_0586 Clostridium novyi NT spore coat protein YP_879052.1 2265569 R 386415 CDS YP_879053.1 118445043 4541305 2266732..2267844 1 NC_008593.1 identified by match to protein family HMM PF00534; mannosyltransferase 2267844 4541305 NT01CX_0587 Clostridium novyi NT mannosyltransferase YP_879053.1 2266732 D 386415 CDS YP_879054.1 118445044 4541306 complement(2267888..2268934) 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2268934 4541306 NT01CX_0588 Clostridium novyi NT methyl-accepting chemotaxis protein YP_879054.1 2267888 R 386415 CDS YP_879055.1 118443797 4541307 complement(2269102..2269827) 1 NC_008593.1 identified by match to protein family HMM PF00037; ferredoxin 2269827 4541307 NT01CX_0589 Clostridium novyi NT ferredoxin YP_879055.1 2269102 R 386415 CDS YP_879056.1 118445045 4541308 2269962..2270645 1 NC_008593.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing transcriptional regulator 2270645 4541308 NT01CX_0590 Clostridium novyi NT cyclic nucleotide-binding domain-containing transcriptional regulator YP_879056.1 2269962 D 386415 CDS YP_879057.1 118443854 4541309 complement(2270652..2272301) 1 NC_008593.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2272301 4541309 NT01CX_0591 Clostridium novyi NT hydroxylamine reductase YP_879057.1 2270652 R 386415 CDS YP_879058.1 118444176 4541310 complement(2272424..2273887) 1 NC_008593.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2273887 4541310 NT01CX_0592 Clostridium novyi NT methyl-accepting chemotaxis protein YP_879058.1 2272424 R 386415 CDS YP_879059.1 118444685 4541311 2274157..2276895 1 NC_008593.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 2276895 4541311 NT01CX_0593 Clostridium novyi NT ATPase P YP_879059.1 2274157 D 386415 CDS YP_879060.1 118443648 4541312 2276998..2278023 1 NC_008593.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 2278023 4541312 NT01CX_0594 Clostridium novyi NT 5'-nucleotidase YP_879060.1 2276998 D 386415 CDS YP_879061.1 118444028 4541313 complement(2278078..2278401) 1 NC_008593.1 small, acid-soluble spore protein gamma-type (SASP) 2278401 4541313 NT01CX_0595 Clostridium novyi NT small, acid-soluble spore protein gamma-type (SASP) YP_879061.1 2278078 R 386415 CDS YP_879062.1 118445046 4541314 complement(2278427..2278519) 1 NC_008593.1 hypothetical protein 2278519 4541314 NT01CX_0596 Clostridium novyi NT hypothetical protein YP_879062.1 2278427 R 386415 CDS YP_879063.1 118443158 4540463 complement(2278546..2279322) 1 NC_008593.1 identified by match to protein family HMM PF00483; mannose-6-phosphate isomerase 2279322 4540463 NT01CX_0597 Clostridium novyi NT mannose-6-phosphate isomerase YP_879063.1 2278546 R 386415 CDS YP_879064.1 118445047 4540464 complement(2279477..2281051) 1 NC_008593.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase 2281051 4540464 NT01CX_0598 Clostridium novyi NT resolvase family site-specific recombinase YP_879064.1 2279477 R 386415 CDS YP_879065.1 118444562 4540465 complement(2281056..2281226) 1 NC_008593.1 hypothetical protein 2281226 4540465 NT01CX_0599 Clostridium novyi NT hypothetical protein YP_879065.1 2281056 R 386415 CDS YP_879066.1 118445048 4540466 complement(2281283..2281843) 1 NC_008593.1 identified by match to protein family HMM PF00881; nitroreductase family protein 2281843 4540466 NT01CX_0600 Clostridium novyi NT nitroreductase family protein YP_879066.1 2281283 R 386415 CDS YP_879067.1 118445049 4540467 complement(2281896..2282849) 1 NC_008593.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer-specific 2-hydroxyacid dehydrogenase 2282849 serA 4540467 serA Clostridium novyi NT D-isomer-specific 2-hydroxyacid dehydrogenase YP_879067.1 2281896 R 386415 CDS YP_879068.1 118443469 4540468 complement(2283022..2283285) 1 NC_008593.1 mannose-1-phosphate guanylyltransferase 2283285 4540468 NT01CX_0602 Clostridium novyi NT mannose-1-phosphate guanylyltransferase YP_879068.1 2283022 R 386415 CDS YP_879069.1 118445050 4540469 complement(2283455..2284636) 1 NC_008593.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2284636 4540469 NT01CX_0603 Clostridium novyi NT acetyl-CoA acetyltransferase YP_879069.1 2283455 R 386415 CDS YP_879070.1 118443049 4540470 complement(2284711..2285556) 1 NC_008593.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 2285556 bhbD 4540470 bhbD Clostridium novyi NT 3-hydroxybutyryl-CoA dehydrogenase YP_879070.1 2284711 R 386415 CDS YP_879071.1 118445051 4540471 complement(2285922..2287505) 1 NC_008593.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 2287505 glpK 4540471 glpK Clostridium novyi NT glycerol kinase YP_879071.1 2285922 R 386415 CDS YP_879072.1 118443682 4540472 complement(2287512..2288222) 1 NC_008593.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 2288222 4540472 NT01CX_0606 Clostridium novyi NT glycerol uptake facilitator protein YP_879072.1 2287512 R 386415 CDS YP_879073.1 118445052 4540473 complement(2288423..2290327) 1 NC_008593.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR01098; methyl-accepting chemotaxis protein 2290327 4540473 NT01CX_0607 Clostridium novyi NT methyl-accepting chemotaxis protein YP_879073.1 2288423 R 386415 CDS YP_879074.1 118443306 4540474 complement(2290408..2291904) 1 NC_008593.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 2291904 glpK 4540474 glpK Clostridium novyi NT glycerol kinase YP_879074.1 2290408 R 386415 CDS YP_879075.1 118443623 4540475 complement(2292123..2292839) 1 NC_008593.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 2292839 4540475 NT01CX_0609 Clostridium novyi NT glycerol uptake facilitator protein YP_879075.1 2292123 R 386415 CDS YP_879076.1 118445053 4540476 complement(2293137..2293508) 1 NC_008593.1 hypothetical protein 2293508 4540476 NT01CX_0610 Clostridium novyi NT hypothetical protein YP_879076.1 2293137 R 386415 CDS YP_879077.1 118444084 4540477 complement(2293515..2294774) 1 NC_008593.1 identified by match to protein family HMM PF00070; sarcosine oxidase alpha subunit 2294774 4540477 NT01CX_0611 Clostridium novyi NT sarcosine oxidase alpha subunit YP_879077.1 2293515 R 386415 CDS YP_879078.1 118444613 4540478 complement(2294825..2296258) 1 NC_008593.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; glycerol-3-phosphate dehydrogenase 2296258 4540478 NT01CX_0612 Clostridium novyi NT glycerol-3-phosphate dehydrogenase YP_879078.1 2294825 R 386415 CDS YP_879079.1 118445054 4540479 complement(2296490..2297056) 1 NC_008593.1 identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 2297056 4540479 NT01CX_0613 Clostridium novyi NT glycerol uptake operon antiterminator regulatory protein YP_879079.1 2296490 R 386415 CDS YP_879080.1 118444209 4540480 complement(2297335..2297838) 1 NC_008593.1 hypothetical protein 2297838 4540480 NT01CX_0614 Clostridium novyi NT hypothetical protein YP_879080.1 2297335 R 386415 CDS YP_879081.1 118444713 4540481 complement(2298102..2299352) 1 NC_008593.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195; Xaa-Pro aminopeptidase 2299352 4540481 NT01CX_0615 Clostridium novyi NT Xaa-Pro aminopeptidase YP_879081.1 2298102 R 386415 CDS YP_879082.1 118442942 4540670 2299494..2300201 1 NC_008593.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 2300201 4540670 NT01CX_0616 Clostridium novyi NT 2-phosphosulfolactate phosphatase YP_879082.1 2299494 D 386415 CDS YP_879083.1 118445055 4540671 complement(2300277..2300477) 1 NC_008593.1 identified by match to protein family HMM PF00313; cold shock protein cspB 2300477 cspB 4540671 cspB Clostridium novyi NT cold shock protein cspB YP_879083.1 2300277 R 386415 CDS YP_879084.1 118443470 4540672 complement(2301062..2301229) 1 NC_008593.1 hypothetical protein 2301229 4540672 NT01CX_0618 Clostridium novyi NT hypothetical protein YP_879084.1 2301062 R 386415 CDS YP_879085.1 118445056 4540673 complement(2301321..2301476) 1 NC_008593.1 hypothetical protein 2301476 4540673 NT01CX_0619 Clostridium novyi NT hypothetical protein YP_879085.1 2301321 R 386415 CDS YP_879086.1 118445057 4540674 complement(2301924..2302418) 1 NC_008593.1 identified by match to protein family HMM PF01202; shikimate kinase 2302418 aroK 4540674 aroK Clostridium novyi NT shikimate kinase YP_879086.1 2301924 R 386415 CDS YP_879087.1 118445058 4540675 complement(2302433..2303245) 1 NC_008593.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 2303245 aroE 4540675 aroE Clostridium novyi NT shikimate 5-dehydrogenase YP_879087.1 2302433 R 386415 CDS YP_879088.1 118445059 4540676 complement(2303257..2303529) 1 NC_008593.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; chorismate mutase 2303529 4540676 NT01CX_0622 Clostridium novyi NT chorismate mutase YP_879088.1 2303257 R 386415 CDS YP_879089.1 118444253 4540677 complement(2303545..2304615) 1 NC_008593.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2304615 aroC 4540677 aroC Clostridium novyi NT chorismate synthase YP_879089.1 2303545 R 386415 CDS YP_879090.1 118445060 4540678 complement(2304593..2305900) 1 NC_008593.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2305900 aroA 4540678 aroA Clostridium novyi NT 3-phosphoshikimate 1-carboxyvinyltransferase YP_879090.1 2304593 R 386415 CDS YP_879091.1 118444550 4540679 complement(2305917..2306978) 1 NC_008593.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2306978 aroB 4540679 aroB Clostridium novyi NT 3-dehydroquinate synthase YP_879091.1 2305917 R 386415 CDS YP_879092.1 118445061 4540680 complement(2306975..2307829) 1 NC_008593.1 identified by match to protein family HMM PF02153; prephenate dehydrogenase 2307829 4540680 NT01CX_0626 Clostridium novyi NT prephenate dehydrogenase YP_879092.1 2306975 R 386415 CDS YP_879093.1 118443990 4540681 complement(2307858..2308871) 1 NC_008593.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 2308871 4540681 NT01CX_0627 Clostridium novyi NT 3-deoxy-7-phosphoheptulonate synthase YP_879093.1 2307858 R 386415 CDS YP_879094.1 118443723 4540682 complement(2309802..2311388) 1 NC_008593.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/carnitine/choline ABC transporter 2311388 4540682 NT01CX_0628 Clostridium novyi NT glycine betaine/carnitine/choline ABC transporter YP_879094.1 2309802 R 386415 CDS YP_879095.1 118445062 4540683 complement(2311388..2312524) 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/carnitine/choline transport ATP-binding protein 2312524 4540683 NT01CX_0629 Clostridium novyi NT glycine betaine/carnitine/choline transport ATP-binding protein YP_879095.1 2311388 R 386415 CDS YP_879096.1 118443364 4540684 complement(2312789..2314063) 1 NC_008593.1 lipase 2314063 4540684 NT01CX_0630 Clostridium novyi NT lipase YP_879096.1 2312789 R 386415 CDS YP_879097.1 118442939 4540685 complement(2314227..2315174) 1 NC_008593.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; activator of 2-hydroxyglutaryl-CoA dehydratase 2315174 4540685 NT01CX_0631 Clostridium novyi NT activator of 2-hydroxyglutaryl-CoA dehydratase YP_879097.1 2314227 R 386415 CDS YP_879098.1 118444444 4540686 complement(2315155..2316252) 1 NC_008593.1 hypothetical protein 2316252 4540686 NT01CX_0632 Clostridium novyi NT hypothetical protein YP_879098.1 2315155 R 386415 CDS YP_879099.1 118445063 4540687 complement(2316224..2317144) 1 NC_008593.1 hypothetical protein 2317144 4540687 NT01CX_0633 Clostridium novyi NT hypothetical protein YP_879099.1 2316224 R 386415 CDS YP_879100.1 118445064 4540688 complement(2317302..2318690) 1 NC_008593.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate transporter 2318690 4540688 NT01CX_0634 Clostridium novyi NT gluconate transporter YP_879100.1 2317302 R 386415 CDS YP_879101.1 118444443 4540689 complement(2318844..2319842) 1 NC_008593.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 2319842 pdxA 4540689 pdxA Clostridium novyi NT 4-hydroxythreonine-4-phosphate dehydrogenase YP_879101.1 2318844 R 386415 CDS YP_879102.1 118444641 4540247 complement(2319855..2321186) 1 NC_008593.1 hypothetical protein 2321186 4540247 NT01CX_0636 Clostridium novyi NT hypothetical protein YP_879102.1 2319855 R 386415 CDS YP_879103.1 118444230 4540248 complement(2321205..2321963) 1 NC_008593.1 identified by match to protein family HMM PF00455; DeoR family transcriptional regulator 2321963 4540248 NT01CX_0637 Clostridium novyi NT DeoR family transcriptional regulator YP_879103.1 2321205 R 386415 CDS YP_879104.1 118444168 4540249 complement(2322167..2323015) 1 NC_008593.1 identified by match to protein family HMM PF00892; transporter 2323015 4540249 NT01CX_0638 Clostridium novyi NT transporter YP_879104.1 2322167 R 386415 CDS YP_879105.1 118445065 4540250 complement(2323162..2323797) 1 NC_008593.1 identified by match to protein family HMM PF00037; ferredoxin-like protein 2323797 4540250 NT01CX_0639 Clostridium novyi NT ferredoxin-like protein YP_879105.1 2323162 R 386415 CDS YP_879106.1 118445066 4540251 2324022..2325731 1 NC_008593.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 2325731 4540251 NT01CX_0640 Clostridium novyi NT ABC transporter YP_879106.1 2324022 D 386415 CDS YP_879107.1 118443603 4540252 complement(2325817..2326452) 1 NC_008593.1 hypothetical protein 2326452 4540252 NT01CX_0641 Clostridium novyi NT hypothetical protein YP_879107.1 2325817 R 386415 CDS YP_879108.1 118445067 4540253 complement(2326478..2330218) 1 NC_008593.1 DNA helicase 2330218 4540253 NT01CX_0642 Clostridium novyi NT DNA helicase YP_879108.1 2326478 R 386415 CDS YP_879109.1 118445068 4540254 complement(2330351..2331355) 1 NC_008593.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 2331355 4540254 NT01CX_0643 Clostridium novyi NT catabolite control protein A YP_879109.1 2330351 R 386415 CDS YP_879110.1 118445069 4540255 2331555..2332247 1 NC_008593.1 similar to yetF/ydfS/ykjA/yrbG/ydfR B. subtilis; identified by match to protein family HMM PF04239; hypothetical protein 2332247 4540255 NT01CX_0644 Clostridium novyi NT hypothetical protein YP_879110.1 2331555 D 386415 CDS YP_879111.1 118445070 4540256 2332278..2332646 1 NC_008593.1 hypothetical protein 2332646 4540256 NT01CX_0645 Clostridium novyi NT hypothetical protein YP_879111.1 2332278 D 386415 CDS YP_879112.1 118442963 4540257 complement(2332692..2335808) 1 NC_008593.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 2335808 ileS 4540257 ileS Clostridium novyi NT isoleucyl-tRNA synthetase YP_879112.1 2332692 R 386415 CDS YP_879113.1 118445071 4540258 complement(2336528..2337118) 1 NC_008593.1 identified by match to protein family HMM PF02452; pemK family DNA-binding protein 2337118 4540258 NT01CX_0647 Clostridium novyi NT pemK family DNA-binding protein YP_879113.1 2336528 R 386415 CDS YP_879114.1 118445072 4540259 complement(2337226..2338161) 1 NC_008593.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 2338161 4540259 NT01CX_0648 Clostridium novyi NT CAAX amino terminal protease YP_879114.1 2337226 R 386415 CDS YP_879115.1 118443466 4540260 complement(2338328..2340145) 1 NC_008593.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07532; N-acetylmuramoyl-L-alanine amidase 2340145 4540260 NT01CX_0649 Clostridium novyi NT N-acetylmuramoyl-L-alanine amidase YP_879115.1 2338328 R 386415 CDS YP_879116.1 118445073 4540261 2340319..2340960 1 NC_008593.1 metallo-beta-lactamase superfamily Zn-dependent hydrolase 2340960 4540261 NT01CX_0650 Clostridium novyi NT metallo-beta-lactamase superfamily Zn-dependent hydrolase YP_879116.1 2340319 D 386415 CDS YP_879117.1 118444284 4540262 complement(2341002..2341667) 1 NC_008593.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381; LacI/xre family transcriptional regulator 2341667 4540262 NT01CX_0651 Clostridium novyi NT LacI/xre family transcriptional regulator YP_879117.1 2341002 R 386415 CDS YP_879118.1 118445074 4540263 complement(2341848..2342228) 1 NC_008593.1 hypothetical protein 2342228 4540263 NT01CX_0652 Clostridium novyi NT hypothetical protein YP_879118.1 2341848 R 386415 CDS YP_879119.1 118445075 4540264 complement(2342251..2342766) 1 NC_008593.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 2342766 4540264 NT01CX_0653 Clostridium novyi NT peptidyl-prolyl cis-trans isomerase YP_879119.1 2342251 R 386415 CDS YP_879120.1 118445076 4540265 complement(2342874..2343653) 1 NC_008593.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 2343653 murI 4540265 murI Clostridium novyi NT glutamate racemase YP_879120.1 2342874 R 386415 CDS YP_879121.1 118445077 4540927 2344004..2345902 1 NC_008593.1 identified by match to protein family HMM PF00120; glutamine synthetase 2345902 4540927 NT01CX_0655 Clostridium novyi NT glutamine synthetase YP_879121.1 2344004 D 386415 CDS YP_879122.1 118445078 4540928 complement(2346025..2346405) 1 NC_008593.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2346405 4540928 NT01CX_0656 Clostridium novyi NT endoribonuclease L-PSP YP_879122.1 2346025 R 386415 CDS YP_879123.1 118444305 4540929 complement(2346585..2347001) 1 NC_008593.1 identified by match to protein family HMM PF00571; hypothetical protein 2347001 4540929 NT01CX_0657 Clostridium novyi NT hypothetical protein YP_879123.1 2346585 R 386415 CDS YP_879124.1 118443911 4540930 2347180..2347524 1 NC_008593.1 hypothetical protein 2347524 4540930 NT01CX_0658 Clostridium novyi NT hypothetical protein YP_879124.1 2347180 D 386415 CDS YP_879125.1 118445079 4540931 2347898..2351335 1 NC_008593.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2351335 4540931 NT01CX_0659 Clostridium novyi NT pyruvate carboxylase YP_879125.1 2347898 D 386415 CDS YP_879126.1 118444163 4540932 complement(2351411..2352868) 1 NC_008593.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 2352868 4540932 NT01CX_0660 Clostridium novyi NT aminoacyl-histidine dipeptidase YP_879126.1 2351411 R 386415 CDS YP_879127.1 118443321 4540933 2353157..2354164 1 NC_008593.1 hypothetical protein 2354164 4540933 NT01CX_0661 Clostridium novyi NT hypothetical protein YP_879127.1 2353157 D 386415 CDS YP_879128.1 118445080 4540934 complement(2354206..2354433) 1 NC_008593.1 hypothetical protein 2354433 4540934 NT01CX_0662 Clostridium novyi NT hypothetical protein YP_879128.1 2354206 R 386415 CDS YP_879129.1 118444055 4540935 2354563..2355378 1 NC_008593.1 hypothetical protein 2355378 4540935 NT01CX_0663 Clostridium novyi NT hypothetical protein YP_879129.1 2354563 D 386415 CDS YP_879130.1 118444458 4540936 complement(2355387..2355605) 1 NC_008593.1 hypothetical protein 2355605 4540936 NT01CX_0664 Clostridium novyi NT hypothetical protein YP_879130.1 2355387 R 386415 CDS YP_879131.1 118445081 4540937 complement(2355707..2356303) 1 NC_008593.1 identified by match to protein family HMM PF02342; tellurium resistance protein terE 2356303 4540937 NT01CX_0665 Clostridium novyi NT tellurium resistance protein terE YP_879131.1 2355707 R 386415 CDS YP_879132.1 118445082 4540938 complement(2356334..2356912) 1 NC_008593.1 identified by match to protein family HMM PF02342; stress protein 2356912 4540938 NT01CX_0666 Clostridium novyi NT stress protein YP_879132.1 2356334 R 386415 CDS YP_879133.1 118443212 4540939 complement(2356957..2357538) 1 NC_008593.1 identified by match to protein family HMM PF02342; tellurium resistance protein terD 2357538 4540939 NT01CX_0667 Clostridium novyi NT tellurium resistance protein terD YP_879133.1 2356957 R 386415 CDS YP_879134.1 118445083 4540940 2357713..2358132 1 NC_008593.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family transcriptional regulator 2358132 4540940 NT01CX_0668 Clostridium novyi NT rrf2 family transcriptional regulator YP_879134.1 2357713 D 386415 CDS YP_879135.1 118445084 4540941 2358238..2360133 1 NC_008593.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase, catalytic subunit 2360133 cooS 4540941 cooS Clostridium novyi NT carbon-monoxide dehydrogenase, catalytic subunit YP_879135.1 2358238 D 386415 CDS YP_879136.1 118445085 4540942 complement(2360215..2361510) 1 NC_008593.1 identified by match to protein family HMM PF00860; xanthine/uracil permease family protein 2361510 4540942 NT01CX_0670 Clostridium novyi NT xanthine/uracil permease family protein YP_879136.1 2360215 R 386415 CDS YP_879137.1 118444325 4540943 complement(2361678..2362505) 1 NC_008593.1 identified by match to protein family HMM PF02342; stress protein 2362505 4540943 NT01CX_0671 Clostridium novyi NT stress protein YP_879137.1 2361678 R 386415 CDS YP_879138.1 118445086 4540944 complement(2362523..2363182) 1 NC_008593.1 identified by match to protein family HMM PF01987; hypothetical protein 2363182 4540944 NT01CX_0672 Clostridium novyi NT hypothetical protein YP_879138.1 2362523 R 386415 CDS YP_879139.1 118443520 4540945 complement(2363325..2363780) 1 NC_008593.1 hypothetical protein 2363780 4540945 NT01CX_0673 Clostridium novyi NT hypothetical protein YP_879139.1 2363325 R 386415 CDS YP_879140.1 118443814 4540946 complement(2363770..2364246) 1 NC_008593.1 hypothetical protein 2364246 4540946 NT01CX_0674 Clostridium novyi NT hypothetical protein YP_879140.1 2363770 R 386415 CDS YP_879141.1 118445087 4541442 2364444..2366954 1 NC_008593.1 similar to YCEG B. subtilis; hypothetical protein 2366954 4541442 NT01CX_0675 Clostridium novyi NT hypothetical protein YP_879141.1 2364444 D 386415 CDS YP_879142.1 118443495 4541443 2366971..2368065 1 NC_008593.1 identified by match to protein family HMM PF05816; TELA family toxic anion resistance protein 2368065 4541443 NT01CX_0676 Clostridium novyi NT TELA family toxic anion resistance protein YP_879142.1 2366971 D 386415 CDS YP_879143.1 118445088 4541444 complement(2368126..2368509) 1 NC_008593.1 hypothetical protein 2368509 4541444 NT01CX_0677 Clostridium novyi NT hypothetical protein YP_879143.1 2368126 R 386415 CDS YP_879144.1 118445089 4541445 complement(2368656..2369357) 1 NC_008593.1 identified by match to protein family HMM PF02308; MgtC family protein 2369357 4541445 NT01CX_0678 Clostridium novyi NT MgtC family protein YP_879144.1 2368656 R 386415 CDS YP_879145.1 118445090 4541446 complement(2369580..2370425) 1 NC_008593.1 MRP protein 2370425 4541446 NT01CX_0679 Clostridium novyi NT MRP protein YP_879145.1 2369580 R 386415 CDS YP_879146.1 118445091 4541447 complement(2370513..2371337) 1 NC_008593.1 lipoprotein 2371337 4541447 NT01CX_0680 Clostridium novyi NT lipoprotein YP_879146.1 2370513 R 386415 CDS YP_879147.1 118443021 4541448 complement(2371451..2372032) 1 NC_008593.1 membrane-associated protein 2372032 4541448 NT01CX_0681 Clostridium novyi NT membrane-associated protein YP_879147.1 2371451 R 386415 CDS YP_879148.1 118445092 4541449 complement(2372137..2373702) 1 NC_008593.1 hypothetical protein 2373702 4541449 NT01CX_0682 Clostridium novyi NT hypothetical protein YP_879148.1 2372137 R 386415 CDS YP_879149.1 118445093 4541450 complement(2373837..2374682) 1 NC_008593.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 2374682 ksgA 4541450 ksgA Clostridium novyi NT dimethyladenosine transferase YP_879149.1 2373837 R 386415 CDS YP_879150.1 118445094 4541451 complement(2374663..2375229) 1 NC_008593.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 2375229 4541451 NT01CX_0684 Clostridium novyi NT primase-like protein YP_879150.1 2374663 R 386415 CDS YP_879151.1 118444294 4541452 complement(2375392..2376453) 1 NC_008593.1 similar to YABE B. subtilis; identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 2376453 4541452 NT01CX_0685 Clostridium novyi NT hypothetical protein YP_879151.1 2375392 R 386415 CDS YP_879152.1 118445095 4541453 complement(2376728..2377495) 1 NC_008593.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 2377495 4541453 NT01CX_0686 Clostridium novyi NT TatD family hydrolase YP_879152.1 2376728 R 386415 CDS YP_879153.1 118445096 4541454 complement(2377648..2378037) 1 NC_008593.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364; PTS system mannnose-specific transporter subunit IIA 2378037 4541454 NT01CX_0687 Clostridium novyi NT PTS system mannnose-specific transporter subunit IIA YP_879153.1 2377648 R 386415 CDS YP_879154.1 118443018 4541455 complement(2378061..2378699) 1 NC_008593.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL 2378699 4541455 NT01CX_0688 Clostridium novyi NT dihydroxyacetone kinase subunit DhaL YP_879154.1 2378061 R 386415 CDS YP_879155.1 118443964 4541456 complement(2378710..2379711) 1 NC_008593.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2379711 dhaK 4541456 dhaK Clostridium novyi NT dihydroxyacetone kinase subunit DhaK YP_879155.1 2378710 R 386415 CDS YP_879156.1 118443457 4541457 2379890..2381080 1 NC_008593.1 hypothetical protein 2381080 4541457 NT01CX_0690 Clostridium novyi NT hypothetical protein YP_879156.1 2379890 D 386415 CDS YP_879157.1 118445097 4541458 2381245..2382684 1 NC_008593.1 ISBma2, transposase 2382684 4541458 NT01CX_0691 Clostridium novyi NT ISBma2, transposase YP_879157.1 2381245 D 386415 CDS YP_879158.1 118445098 4541459 complement(2382758..2383684) 1 NC_008593.1 hypothetical protein 2383684 4541459 NT01CX_0692 Clostridium novyi NT hypothetical protein YP_879158.1 2382758 R 386415 CDS YP_879159.1 118443771 4541460 complement(2383668..2384186) 1 NC_008593.1 identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor 2384186 4541460 NT01CX_0693 Clostridium novyi NT ECF subfamily RNA polymerase sigma factor YP_879159.1 2383668 R 386415 CDS YP_879160.1 118443237 4541107 2384389..2385093 1 NC_008593.1 hypothetical protein 2385093 4541107 NT01CX_0694 Clostridium novyi NT hypothetical protein YP_879160.1 2384389 D 386415 CDS YP_879161.1 118445099 4541108 complement(2385129..2386655) 1 NC_008593.1 identified by match to protein family HMM PF04286; hypothetical protein 2386655 4541108 NT01CX_0695 Clostridium novyi NT hypothetical protein YP_879161.1 2385129 R 386415 CDS YP_879162.1 118443280 4541109 2386849..2387586 1 NC_008593.1 hypothetical protein 2387586 4541109 NT01CX_0696 Clostridium novyi NT hypothetical protein YP_879162.1 2386849 D 386415 CDS YP_879163.1 118445100 4541110 complement(2387676..2389616) 1 NC_008593.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2389616 metG 4541110 metG Clostridium novyi NT methionyl-tRNA synthetase YP_879163.1 2387676 R 386415 CDS YP_879164.1 118445101 4541111 2390204..2390899 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 2390899 4541111 NT01CX_0698 Clostridium novyi NT two-component response regulator YP_879164.1 2390204 D 386415 CDS YP_879165.1 118445102 4541112 2390901..2392292 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 2392292 4541112 NT01CX_0699 Clostridium novyi NT two-component sensor histidine kinase YP_879165.1 2390901 D 386415 CDS YP_879166.1 118442919 4541113 2392383..2393936 1 NC_008593.1 lipoprotein 2393936 4541113 NT01CX_0700 Clostridium novyi NT lipoprotein YP_879166.1 2392383 D 386415 CDS YP_879167.1 118443474 4541114 2393985..2394887 1 NC_008593.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 2394887 4541114 NT01CX_0701 Clostridium novyi NT polysaccharide deacetylase family protein YP_879167.1 2393985 D 386415 CDS YP_879168.1 118445103 4541115 complement(2394967..2395539) 1 NC_008593.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; phage SPO1 DNA polymerase-related protein 2395539 4541115 NT01CX_0702 Clostridium novyi NT phage SPO1 DNA polymerase-related protein YP_879168.1 2394967 R 386415 CDS YP_879169.1 118445104 4541116 2395671..2397260 1 NC_008593.1 hypothetical protein 2397260 4541116 NT01CX_0703 Clostridium novyi NT hypothetical protein YP_879169.1 2395671 D 386415 CDS YP_879170.1 118445105 4541117 complement(2397317..2398114) 1 NC_008593.1 ISBma2, transposase 2398114 4541117 NT01CX_0704 Clostridium novyi NT ISBma2, transposase YP_879170.1 2397317 R 386415 CDS YP_879171.1 118445106 4541118 complement(2398165..2398755) 1 NC_008593.1 ISBma2, transposase 2398755 4541118 NT01CX_0705 Clostridium novyi NT ISBma2, transposase YP_879171.1 2398165 R 386415 CDS YP_879172.1 118444092 4541119 2398971..2400383 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2400383 4541119 NT01CX_0706 Clostridium novyi NT MATE efflux family protein YP_879172.1 2398971 D 386415 CDS YP_879173.1 118445107 4541120 complement(2400425..2401324) 1 NC_008593.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2401324 thrB 4541120 thrB Clostridium novyi NT homoserine kinase YP_879173.1 2400425 R 386415 CDS YP_879174.1 118445108 4541121 complement(2401528..2401689) 1 NC_008593.1 hypothetical protein 2401689 4541121 NT01CX_0708 Clostridium novyi NT hypothetical protein YP_879174.1 2401528 R 386415 CDS YP_879175.1 118443499 4541122 complement(2401682..2401825) 1 NC_008593.1 hypothetical protein 2401825 4541122 NT01CX_0709 Clostridium novyi NT hypothetical protein YP_879175.1 2401682 R 386415 CDS YP_879176.1 118445109 4541123 complement(2401833..2402357) 1 NC_008593.1 identified by match to protein family HMM PF07670; spore maturation protein B 2402357 spmB 4541123 spmB Clostridium novyi NT spore maturation protein B YP_879176.1 2401833 R 386415 CDS YP_879177.1 118445110 4541124 complement(2402381..2402956) 1 NC_008593.1 identified by match to protein family HMM PF07670; spore maturation protein A 2402956 spmA 4541124 spmA Clostridium novyi NT spore maturation protein A YP_879177.1 2402381 R 386415 CDS YP_879178.1 118443504 4541125 complement(2403217..2403678) 1 NC_008593.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2403678 ribH 4541125 ribH Clostridium novyi NT 6,7-dimethyl-8-ribityllumazine synthase YP_879178.1 2403217 R 386415 CDS YP_879179.1 118444246 4541126 complement(2403683..2404927) 1 NC_008593.1 Includes: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBPsynthase); identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribA 2404927 4541126 NT01CX_0713 Clostridium novyi NT riboflavin biosynthesis protein ribA YP_879179.1 2403683 R 386415 CDS YP_879180.1 118444351 4540286 complement(2404941..2405582) 1 NC_008593.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2405582 ribE 4540286 ribE Clostridium novyi NT riboflavin synthase subunit alpha YP_879180.1 2404941 R 386415 CDS YP_879181.1 118445111 4540287 complement(2405567..2406700) 1 NC_008593.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 2406700 ribD 4540287 ribD Clostridium novyi NT riboflavin biosynthesis protein RibD YP_879181.1 2405567 R 386415 CDS YP_879182.1 118445112 4540288 2407316..2407558 1 NC_008593.1 metal-binding protein 2407558 4540288 NT01CX_0716 Clostridium novyi NT metal-binding protein YP_879182.1 2407316 D 386415 CDS YP_879183.1 118445113 4540289 complement(2407613..2408836) 1 NC_008593.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2408836 pepT 4540289 pepT Clostridium novyi NT peptidase T YP_879183.1 2407613 R 386415 CDS YP_879184.1 118444442 4540290 complement(2408937..2409755) 1 NC_008593.1 hypothetical protein 2409755 4540290 NT01CX_0718 Clostridium novyi NT hypothetical protein YP_879184.1 2408937 R 386415 CDS YP_879185.1 118445114 4540291 2410081..2412420 1 NC_008593.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; two-component sensor histidine kinase 2412420 4540291 NT01CX_0719 Clostridium novyi NT two-component sensor histidine kinase YP_879185.1 2410081 D 386415 CDS YP_879186.1 118445115 4540292 complement(2412447..2412953) 1 NC_008593.1 hypothetical protein 2412953 4540292 NT01CX_0720 Clostridium novyi NT hypothetical protein YP_879186.1 2412447 R 386415 CDS YP_879187.1 118445116 4540293 complement(2412967..2413350) 1 NC_008593.1 hypothetical protein 2413350 4540293 NT01CX_0721 Clostridium novyi NT hypothetical protein YP_879187.1 2412967 R 386415 CDS YP_879188.1 118443919 4540294 2413613..2414653 1 NC_008593.1 identified by match to protein family HMM PF02424; ApbE family protein 2414653 4540294 NT01CX_0722 Clostridium novyi NT ApbE family protein YP_879188.1 2413613 D 386415 CDS YP_879189.1 118443528 4540295 2414865..2416013 1 NC_008593.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 2416013 glgC 4540295 glgC Clostridium novyi NT glucose-1-phosphate adenylyltransferase YP_879189.1 2414865 D 386415 CDS YP_879190.1 118442867 4540296 2416024..2417148 1 NC_008593.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit 2417148 glgD 4540296 glgD Clostridium novyi NT glucose-1-phosphate adenylyltransferase, GlgD subunit YP_879190.1 2416024 D 386415 CDS YP_879191.1 118445117 4540297 2417275..2417850 1 NC_008593.1 hypothetical protein 2417850 4540297 NT01CX_0725 Clostridium novyi NT hypothetical protein YP_879191.1 2417275 D 386415 CDS YP_879192.1 118444260 4540298 complement(2417883..2419424) 1 NC_008593.1 identified by match to protein family HMM PF01832; Beta-N-acetylglucosaminidase 2419424 4540298 NT01CX_0726 Clostridium novyi NT Beta-N-acetylglucosaminidase YP_879192.1 2417883 R 386415 CDS YP_879193.1 118445118 4540299 complement(2419601..2420395) 1 NC_008593.1 identified by match to protein family HMM PF01261; AP endonuclease 2420395 4540299 NT01CX_0727 Clostridium novyi NT AP endonuclease YP_879193.1 2419601 R 386415 CDS YP_879194.1 118443172 4540300 complement(2420484..2422076) 1 NC_008593.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2422076 serA 4540300 serA Clostridium novyi NT D-3-phosphoglycerate dehydrogenase YP_879194.1 2420484 R 386415 CDS YP_879195.1 118443248 4540301 complement(2422150..2423223) 1 NC_008593.1 identified by match to protein family HMM PF00266; class V aminotransferase 2423223 4540301 NT01CX_0729 Clostridium novyi NT class V aminotransferase YP_879195.1 2422150 R 386415 CDS YP_879196.1 118444619 4540302 complement(2423699..2425072) 1 NC_008593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2425072 4540302 NT01CX_0730 Clostridium novyi NT MATE efflux family protein YP_879196.1 2423699 R 386415 CDS YP_879197.1 118444570 4540303 2425842..2426015 1 NC_008593.1 hypothetical protein 2426015 4540303 NT01CX_0731 Clostridium novyi NT hypothetical protein YP_879197.1 2425842 D 386415 CDS YP_879198.1 118444152 4540304 complement(2426146..2426883) 1 NC_008593.1 hypothetical protein 2426883 4540304 NT01CX_0732 Clostridium novyi NT hypothetical protein YP_879198.1 2426146 R 386415 CDS YP_879199.1 118445119 4540870 2427018..2427737 1 NC_008593.1 lipoprotein 2427737 4540870 NT01CX_0733 Clostridium novyi NT lipoprotein YP_879199.1 2427018 D 386415 CDS YP_879200.1 118445120 4540871 complement(2428053..2428835) 1 NC_008593.1 hypothetical protein 2428835 4540871 NT01CX_0734 Clostridium novyi NT hypothetical protein YP_879200.1 2428053 R 386415 CDS YP_879201.1 118445121 4540872 2429131..2429847 1 NC_008593.1 lipoprotein 2429847 4540872 NT01CX_0735 Clostridium novyi NT lipoprotein YP_879201.1 2429131 D 386415 CDS YP_879202.1 118445122 4540873 2430610..2431083 1 NC_008593.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2431083 ispF 4540873 ispF Clostridium novyi NT 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_879202.1 2430610 D 386415 CDS YP_879203.1 118445123 4540874 complement(2431114..2431329) 1 NC_008593.1 hypothetical protein 2431329 4540874 NT01CX_0737 Clostridium novyi NT hypothetical protein YP_879203.1 2431114 R 386415 CDS YP_879204.1 118444037 4540875 complement(2431366..2431587) 1 NC_008593.1 hypothetical protein 2431587 4540875 NT01CX_0738 Clostridium novyi NT hypothetical protein YP_879204.1 2431366 R 386415 CDS YP_879205.1 118444543 4540876 2431789..2432172 1 NC_008593.1 identified by match to protein family HMM PF01638; transcriptional regulator 2432172 4540876 NT01CX_0739 Clostridium novyi NT transcriptional regulator YP_879205.1 2431789 D 386415 CDS YP_879206.1 118445124 4540877 complement(2432192..2432548) 1 NC_008593.1 hypothetical protein 2432548 4540877 NT01CX_0740 Clostridium novyi NT hypothetical protein YP_879206.1 2432192 R 386415 CDS YP_879207.1 118443715 4540878 complement(2432561..2433607) 1 NC_008593.1 hypothetical protein 2433607 4540878 NT01CX_0741 Clostridium novyi NT hypothetical protein YP_879207.1 2432561 R 386415 CDS YP_879208.1 118445125 4540879 complement(2433876..2435291) 1 NC_008593.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 2435291 4540879 NT01CX_0742 Clostridium novyi NT sodium:alanine symporter family protein YP_879208.1 2433876 R 386415 CDS YP_879209.1 118444489 4540880 complement(2435525..2435878) 1 NC_008593.1 hypothetical protein 2435878 4540880 NT01CX_0743 Clostridium novyi NT hypothetical protein YP_879209.1 2435525 R 386415 CDS YP_879210.1 118445126 4540881 complement(2435862..2437901) 1 NC_008593.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 2437901 4540881 NT01CX_0744 Clostridium novyi NT OPT family oligopeptide transporter YP_879210.1 2435862 R 386415 CDS YP_879211.1 118443170 4540882 complement(2438050..2439039) 1 NC_008593.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 2439039 argF 4540882 argF Clostridium novyi NT ornithine carbamoyltransferase YP_879211.1 2438050 R 386415 CDS YP_879212.1 118445127 4540883 complement(2439109..2439264) 1 NC_008593.1 hypothetical protein 2439264 4540883 NT01CX_0746 Clostridium novyi NT hypothetical protein YP_879212.1 2439109 R 386415 CDS YP_879213.1 118445128 4540884 complement(2439305..2439910) 1 NC_008593.1 similar to YKRK B. subtilis; hypothetical protein 2439910 4540884 NT01CX_0747 Clostridium novyi NT hypothetical protein YP_879213.1 2439305 R 386415 CDS YP_879214.1 118445129 4540885 complement(2440506..2441147) 1 NC_008593.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 2441147 4540885 NT01CX_0748 Clostridium novyi NT translaldolase YP_879214.1 2440506 R 386415 CDS YP_879215.1 118443843 4540886 complement(2441168..2442541) 1 NC_008593.1 identified by match to protein family HMM PF01743; polyA polymerase family protein 2442541 4540886 NT01CX_0749 Clostridium novyi NT polyA polymerase family protein YP_879215.1 2441168 R 386415 CDS YP_879216.1 118445130 4540887 2443195..2443443 1 NC_008593.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2443443 4540887 NT01CX_0750 Clostridium novyi NT AbrB family transcriptional regulator YP_879216.1 2443195 D 386415 CDS YP_879217.1 118444032 4540888 complement(2443605..2444819) 1 NC_008593.1 identified by match to protein family HMM PF00877; NLP/P60 family protein 2444819 4540888 NT01CX_0751 Clostridium novyi NT NLP/P60 family protein YP_879217.1 2443605 R 386415 CDS YP_879218.1 118443390 4540889 complement(2444965..2445807) 1 NC_008593.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole (Corrin/Porphyrin) methylase 2445807 4540889 NT01CX_0752 Clostridium novyi NT tetrapyrrole (Corrin/Porphyrin) methylase YP_879218.1 2444965 R 386415 CDS YP_879219.1 118445131 4540404 complement(2445829..2446572) 1 NC_008593.1 SAM-dependent methyltransferase 2446572 4540404 NT01CX_0753 Clostridium novyi NT SAM-dependent methyltransferase YP_879219.1 2445829 R 386415 CDS YP_879220.1 118444214 4540405 2446790..2447140 1 NC_008593.1 identified by match to protein family HMM PF03788; LrgA family protein 2447140 4540405 NT01CX_0754 Clostridium novyi NT LrgA family protein YP_879220.1 2446790 D 386415 CDS YP_879221.1 118443570 4540406 2447137..2447841 1 NC_008593.1 identified by match to protein family HMM PF04172; LrgB family protein 2447841 4540406 NT01CX_0755 Clostridium novyi NT LrgB family protein YP_879221.1 2447137 D 386415 CDS YP_879222.1 118445132 4540407 complement(2447879..2448052) 1 NC_008593.1 identified by match to protein family HMM PF00037; ferredoxin 2448052 4540407 NT01CX_0756 Clostridium novyi NT ferredoxin YP_879222.1 2447879 R 386415 CDS YP_879223.1 118445133 4540408 complement(2448150..2448353) 1 NC_008593.1 identified by match to protein family HMM PF00403; heavy-metal-associated protein 2448353 4540408 NT01CX_0757 Clostridium novyi NT heavy-metal-associated protein YP_879223.1 2448150 R 386415 CDS YP_879224.1 118443945 4540409 complement(2448366..2449280) 1 NC_008593.1 identified by match to protein family HMM PF04468; hypothetical protein 2449280 4540409 NT01CX_0758 Clostridium novyi NT hypothetical protein YP_879224.1 2448366 R 386415 CDS YP_879225.1 118442938 4540410 complement(2449282..2450226) 1 NC_008593.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2450226 4540410 NT01CX_0759 Clostridium novyi NT DNA polymerase III subunit delta' YP_879225.1 2449282 R 386415 CDS YP_879226.1 118445134 4540411 complement(2450242..2450571) 1 NC_008593.1 similar to YAAQ B. subtilis; identified by match to protein family HMM PF06153; nitrogen regulatory protein P-II family protein 2450571 4540411 NT01CX_0760 Clostridium novyi NT nitrogen regulatory protein P-II family protein YP_879226.1 2450242 R 386415 CDS YP_879227.1 118444724 4540412 complement(2450655..2451272) 1 NC_008593.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 2451272 4540412 NT01CX_0761 Clostridium novyi NT thymidylate kinase YP_879227.1 2450655 R 386415 CDS YP_879228.1 118444333 4540413 complement(2451300..2452739) 1 NC_008593.1 identified by match to protein family HMM PF01276; arginine/lysine/ornithine decarboxylases 2452739 4540413 NT01CX_0762 Clostridium novyi NT arginine/lysine/ornithine decarboxylases YP_879228.1 2451300 R 386415 CDS YP_879229.1 118445135 4540414 2453130..2453633 1 NC_008593.1 lipoprotein 2453633 4540414 NT01CX_0763 Clostridium novyi NT lipoprotein YP_879229.1 2453130 D 386415 CDS YP_879230.1 118445136 4540415 complement(2453708..2455399) 1 NC_008593.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 2455399 4540415 NT01CX_0764 Clostridium novyi NT ErfK/YbiS/YcfS/YnhG family protein YP_879230.1 2453708 R 386415 CDS YP_879231.1 118443657 4540416 2455572..2456720 1 NC_008593.1 amidohydrolase 2456720 4540416 NT01CX_0765 Clostridium novyi NT amidohydrolase YP_879231.1 2455572 D 386415 CDS YP_879232.1 118445137 4540417 complement(2456760..2457239) 1 NC_008593.1 hypothetical protein 2457239 4540417 NT01CX_0766 Clostridium novyi NT hypothetical protein YP_879232.1 2456760 R 386415 CDS YP_879233.1 118445138 4540418 2457594..2458544 1 NC_008593.1 identified by match to protein family HMM PF01544; magnesium transporter CorA family protein 2458544 4540418 NT01CX_0767 Clostridium novyi NT magnesium transporter CorA family protein YP_879233.1 2457594 D 386415 CDS YP_879234.1 118445139 4540419 2458620..2459537 1 NC_008593.1 identified by match to protein family HMM PF02016; mccF-like protein 2459537 4540419 NT01CX_0768 Clostridium novyi NT mccF-like protein YP_879234.1 2458620 D 386415 CDS YP_879235.1 118445140 4540420 2459696..2461135 1 NC_008593.1 ISBma2, transposase 2461135 4540420 NT01CX_0769 Clostridium novyi NT ISBma2, transposase YP_879235.1 2459696 D 386415 CDS YP_879236.1 118445141 4540421 complement(2461214..2462596) 1 NC_008593.1 identified by match to protein family HMM PF00209; sodium-dependent symporter family protein 2462596 4540421 NT01CX_0770 Clostridium novyi NT sodium-dependent symporter family protein YP_879236.1 2461214 R 386415 CDS YP_879237.1 118444594 4540422 complement(2462747..2463484) 1 NC_008593.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2463484 4540422 NT01CX_0771 Clostridium novyi NT NAD-dependent deacetylase YP_879237.1 2462747 R 386415 CDS YP_879238.1 118444049 4540779 complement(2463709..2464584) 1 NC_008593.1 identified by match to protein family HMM PF01839; hypothetical protein 2464584 4540779 NT01CX_0772 Clostridium novyi NT hypothetical protein YP_879238.1 2463709 R 386415 CDS YP_879240.1 118445143 4540784 complement(2470100..2470843) 1 NC_008593.1 identified by match to protein family HMM PF00639; peptidil-prolyl cis-trans isomerase 2470843 4540784 NT01CX_0777 Clostridium novyi NT peptidil-prolyl cis-trans isomerase YP_879240.1 2470100 R 386415 CDS YP_879242.1 118445145 4540764 complement(2477178..2478074) 1 NC_008593.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 2478074 4540764 NT01CX_0785 Clostridium novyi NT CAAX amino terminal protease YP_879242.1 2477178 R 386415 CDS YP_879243.1 118444432 4540765 complement(2478197..2478979) 1 NC_008593.1 hypothetical protein 2478979 4540765 NT01CX_0786 Clostridium novyi NT hypothetical protein YP_879243.1 2478197 R 386415 CDS YP_879244.1 118445146 4540766 complement(2478979..2479674) 1 NC_008593.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2479674 yhcG 4540766 yhcG Clostridium novyi NT ABC transporter ATP-binding protein YP_879244.1 2478979 R 386415 CDS YP_879245.1 118445147 4540767 complement(2479677..2480045) 1 NC_008593.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2480045 4540767 NT01CX_0788 Clostridium novyi NT GntR family transcriptional regulator YP_879245.1 2479677 R 386415 CDS YP_879246.1 118444644 4540768 complement(2480185..2480601) 1 NC_008593.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase superfamily protein 2480601 4540768 NT01CX_0789 Clostridium novyi NT thioesterase superfamily protein YP_879246.1 2480185 R 386415 CDS YP_879247.1 118443398 4540769 2480696..2481367 1 NC_008593.1 identified by match to protein family HMM PF03167; uracil DNA glycosylase 2481367 4540769 NT01CX_0790 Clostridium novyi NT uracil DNA glycosylase YP_879247.1 2480696 D 386415 CDS YP_879248.1 118443344 4540770 complement(2481461..2482444) 1 NC_008593.1 identified by match to protein family HMM PF05343; aminopeptidase M42 family endoglucanase 2482444 celM 4540770 celM Clostridium novyi NT aminopeptidase M42 family endoglucanase YP_879248.1 2481461 R 386415 CDS YP_879249.1 118444303 4540771 complement(2482468..2482704) 1 NC_008593.1 hypothetical protein 2482704 4540771 NT01CX_0792 Clostridium novyi NT hypothetical protein YP_879249.1 2482468 R 386415 CDS YP_879250.1 118445148 4540772 complement(2482748..2483716) 1 NC_008593.1 identified by match to protein family HMM PF05343; aminopeptidase M42 family endoglucanase 2483716 4540772 NT01CX_0793 Clostridium novyi NT aminopeptidase M42 family endoglucanase YP_879250.1 2482748 R 386415 CDS YP_879251.1 118445149 4540773 complement(2483707..2484726) 1 NC_008593.1 identified by match to protein family HMM PF05343; M20/M25/M40 family peptidase 2484726 4540773 NT01CX_0794 Clostridium novyi NT M20/M25/M40 family peptidase YP_879251.1 2483707 R 386415 CDS YP_879252.1 118445150 4540774 complement(2484881..2485810) 1 NC_008593.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2485810 4540774 NT01CX_0795 Clostridium novyi NT N-acetylmuramoyl-L-alanine amidase YP_879252.1 2484881 R 386415 CDS YP_879253.1 118443672 4540775 complement(2485956..2487182) 1 NC_008593.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 2487182 4540775 NT01CX_0796 Clostridium novyi NT mechanosensitive ion channel family protein YP_879253.1 2485956 R 386415 CDS YP_879255.1 118445152 4541095 complement(2492485..2493423) 1 NC_008593.1 identified by match to protein family HMM PF00583; ribosomal-protein (S5)-alanine N-acetyltransferase 2493423 4541095 NT01CX_0802 Clostridium novyi NT ribosomal-protein (S5)-alanine N-acetyltransferase YP_879255.1 2492485 R 386415 CDS YP_879256.1 118443978 4541096 complement(2493438..2494616) 1 NC_008593.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 2494616 4541096 NT01CX_0803 Clostridium novyi NT major facilitator superfamily protein YP_879256.1 2493438 R 386415 CDS YP_879257.1 118444025 4541097 complement(2494618..2495334) 1 NC_008593.1 identified by match to protein family HMM PF00899; ThiF family protein 2495334 4541097 NT01CX_0804 Clostridium novyi NT ThiF family protein YP_879257.1 2494618 R 386415 CDS YP_879258.1 118445153 4541098 complement(2495508..2495693) 1 NC_008593.1 hypothetical protein 2495693 4541098 NT01CX_0805 Clostridium novyi NT hypothetical protein YP_879258.1 2495508 R 386415 CDS YP_879259.1 118443228 4541099 complement(2495857..2496036) 1 NC_008593.1 hypothetical protein 2496036 4541099 NT01CX_0806 Clostridium novyi NT hypothetical protein YP_879259.1 2495857 R 386415 CDS YP_879260.1 118445154 4541100 complement(2496071..2496568) 1 NC_008593.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 2496568 4541100 NT01CX_0807 Clostridium novyi NT MutT/nudix family protein YP_879260.1 2496071 R 386415 CDS YP_879261.1 118445155 4541101 complement(2496670..2497359) 1 NC_008593.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 2497359 sfsA 4541101 sfsA Clostridium novyi NT sugar fermentation stimulation protein A YP_879261.1 2496670 R 386415 CDS YP_879263.1 118445156 4540086 complement(2503501..2504394) 1 NC_008593.1 hypothetical protein 2504394 4540086 NT01CX_0821 Clostridium novyi NT hypothetical protein YP_879263.1 2503501 R 386415 CDS YP_879264.1 118445157 4540087 complement(2504456..2504710) 1 NC_008593.1 identified by match to protein family HMM PF07441; sigma-K factor processing regulatory protein BOFA 2504710 4540087 NT01CX_0822 Clostridium novyi NT sigma-K factor processing regulatory protein BOFA YP_879264.1 2504456 R 386415 CDS YP_879265.1 118445158 4540088 complement(2504835..2505440) 1 NC_008593.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2505440 recR 4540088 recR Clostridium novyi NT recombination protein RecR YP_879265.1 2504835 R 386415 CDS YP_879266.1 118445159 4540089 complement(2505447..2505791) 1 NC_008593.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 2505791 4540089 NT01CX_0824 Clostridium novyi NT hypothetical protein YP_879266.1 2505447 R 386415 CDS YP_879267.1 118445160 4540090 complement(2505873..2507492) 1 NC_008593.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 2507492 dnaX 4540090 dnaX Clostridium novyi NT DNA polymerase III subunits gamma and tau YP_879267.1 2505873 R 386415 CDS YP_879268.1 118444340 4540483 complement(2508131..2508847) 1 NC_008593.1 lipoprotein 2508847 4540483 NT01CX_0827 Clostridium novyi NT lipoprotein YP_879268.1 2508131 R 386415 CDS YP_879269.1 118444046 4540484 complement(2508909..2509352) 1 NC_008593.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein, pytative 2509352 4540484 NT01CX_0828 Clostridium novyi NT cytidine/deoxycytidylate deaminase family protein, pytative YP_879269.1 2508909 R 386415 CDS YP_879270.1 118444545 4540486 2509640..2510374 1 NC_008593.1 identified by match to protein family HMM TIGR02206; hypothetical protein 2510374 4540486 NT01CX_0830 Clostridium novyi NT hypothetical protein YP_879270.1 2509640 D 386415 CDS YP_879271.1 118445161 4540487 2510441..2511328 1 NC_008593.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2511328 4540487 NT01CX_0831 Clostridium novyi NT phosphatidylserine decarboxylase YP_879271.1 2510441 D 386415 CDS YP_879272.1 118443446 4540488 complement(2511323..2512054) 1 NC_008593.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 2512054 4540488 NT01CX_0832 Clostridium novyi NT metallo-beta-lactamase superfamily protein YP_879272.1 2511323 R 386415 CDS YP_879273.1 118444278 4540489 complement(2512289..2514112) 1 NC_008593.1 identified by match to protein family HMM PF03009; periplasmic glycerophosphoryl diester phosphodiesterase 2514112 4540489 NT01CX_0833 Clostridium novyi NT periplasmic glycerophosphoryl diester phosphodiesterase YP_879273.1 2512289 R 386415 CDS YP_879274.1 118445162 4540490 complement(2514695..2515999) 1 NC_008593.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; PBSX family phage terminase large subunit 2515999 4540490 NT01CX_0834 Clostridium novyi NT PBSX family phage terminase large subunit YP_879274.1 2514695 R 386415 CDS YP_879275.1 118445163 4540491 complement(2515992..2516360) 1 NC_008593.1 identified by match to protein family HMM PF03592; Phage terminase small subunit 2516360 4540491 NT01CX_0835 Clostridium novyi NT Phage terminase small subunit YP_879275.1 2515992 R 386415 CDS YP_879276.1 118445164 4540492 complement(2516435..2517322) 1 NC_008593.1 identified by match to protein family HMM PF05065; Phage capsid family protein 2517322 4540492 NT01CX_0836 Clostridium novyi NT Phage capsid family protein YP_879276.1 2516435 R 386415 CDS YP_879277.1 118445165 4540493 complement(2517322..2517690) 1 NC_008593.1 hypothetical protein 2517690 4540493 NT01CX_0837 Clostridium novyi NT hypothetical protein YP_879277.1 2517322 R 386415 CDS YP_879278.1 118445166 4540494 complement(2517709..2518248) 1 NC_008593.1 hypothetical protein 2518248 4540494 NT01CX_0838 Clostridium novyi NT hypothetical protein YP_879278.1 2517709 R 386415 CDS YP_879279.1 118445167 4540495 complement(2518261..2518569) 1 NC_008593.1 hypothetical protein 2518569 4540495 NT01CX_0839 Clostridium novyi NT hypothetical protein YP_879279.1 2518261 R 386415 CDS YP_879280.1 118445168 4540496 complement(2518666..2520840) 1 NC_008593.1 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; primase 2520840 4540496 NT01CX_0840 Clostridium novyi NT primase YP_879280.1 2518666 R 386415 CDS YP_879281.1 118445169 4540497 2521273..2521716 1 NC_008593.1 identified by match to protein family HMM PF01381; MerR family transcriptional regulator 2521716 4540497 NT01CX_0841 Clostridium novyi NT MerR family transcriptional regulator YP_879281.1 2521273 D 386415 CDS YP_879282.1 118444314 4540498 2521780..2521884 1 NC_008593.1 hypothetical protein 2521884 4540498 NT01CX_0842 Clostridium novyi NT hypothetical protein YP_879282.1 2521780 D 386415 CDS YP_879283.1 118443064 4540499 2521851..2523014 1 NC_008593.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 2523014 4540499 NT01CX_0843 Clostridium novyi NT phage integrase family site specific recombinase YP_879283.1 2521851 D 386415 CDS YP_879284.1 118443475 4541625 complement(2523763..2525043) 1 NC_008593.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2525043 serS 4541625 serS Clostridium novyi NT seryl-tRNA synthetase YP_879284.1 2523763 R 386415 CDS YP_879285.1 118445170 4541626 complement(2525397..2525654) 1 NC_008593.1 hypothetical protein 2525654 4541626 NT01CX_0849 Clostridium novyi NT hypothetical protein YP_879285.1 2525397 R 386415 CDS YP_879286.1 118445171 4541627 complement(2525644..2527038) 1 NC_008593.1 identified by match to protein family HMM PF04324; FAD-dependent dehydrogenase 2527038 4541627 NT01CX_0850 Clostridium novyi NT FAD-dependent dehydrogenase YP_879286.1 2525644 R 386415 CDS YP_879287.1 118443834 4541628 complement(2527064..2529184) 1 NC_008593.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2529184 4541628 NT01CX_0851 Clostridium novyi NT sensor histidine kinase YP_879287.1 2527064 R 386415 CDS YP_879288.1 118443790 4541629 complement(2529421..2532147) 1 NC_008593.1 identified by match to protein family HMM PF03699; hypothetical protein 2532147 4541629 NT01CX_0852 Clostridium novyi NT hypothetical protein YP_879288.1 2529421 R 386415 CDS YP_879289.1 118445172 4541630 complement(2532164..2532676) 1 NC_008593.1 identified by match to protein family HMM PF02829; 3H domain-containing protein 2532676 4541630 NT01CX_0853 Clostridium novyi NT 3H domain-containing protein YP_879289.1 2532164 R 386415 CDS YP_879290.1 118445173 4541631 complement(2532690..2533199) 1 NC_008593.1 identified by match to protein family HMM TIGR00277; hypothetical protein 2533199 4541631 NT01CX_0854 Clostridium novyi NT hypothetical protein YP_879290.1 2532690 R 386415 CDS YP_879292.1 118445174 4541465 complement(2538630..2541161) 1 NC_008593.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2541161 gyrA 4541465 gyrA Clostridium novyi NT DNA gyrase subunit A YP_879292.1 2538630 R 386415 CDS YP_879293.1 118445175 4541466 complement(2541183..2543096) 1 NC_008593.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2543096 gyrB 4541466 gyrB Clostridium novyi NT DNA gyrase subunit B YP_879293.1 2541183 R 386415 CDS YP_879294.1 118445176 4541467 complement(2543112..2543381) 1 NC_008593.1 hypothetical protein 2543381 4541467 NT01CX_0863 Clostridium novyi NT hypothetical protein YP_879294.1 2543112 R 386415 CDS YP_879295.1 118443917 4541468 complement(2543402..2544487) 1 NC_008593.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2544487 recF 4541468 recF Clostridium novyi NT recombination protein F YP_879295.1 2543402 R 386415 CDS YP_879296.1 118443611 4541469 complement(2544543..2544749) 1 NC_008593.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 2544749 4541469 NT01CX_0865 Clostridium novyi NT S4 domain-containing protein YP_879296.1 2544543 R 386415 CDS YP_879297.1 118445177 4541470 complement(2544786..2545889) 1 NC_008593.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2545889 dnaN 4541470 dnaN Clostridium novyi NT DNA polymerase III subunit beta YP_879297.1 2544786 R 386415 CDS YP_879298.1 118444635 4541471 complement(2546147..2547493) 1 NC_008593.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 2547493 dnaA 4541471 dnaA Clostridium novyi NT chromosomal replication initiation protein YP_879298.1 2546147 R 386415 CDS