-- dump date 20140619_044732 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 386415000001 SEQ_END SEQ_END NC_008593.1 2547720 2547720 DR NC_008593.1; contig end 2547720..2547720 Clostridium novyi NT YP_876974.1 CDS rpmH NC_008593.1 335 469 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 335..469 Clostridium novyi NT 4541247 YP_876975.1 CDS rnpA NC_008593.1 527 868 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 527..868 Clostridium novyi NT 4540858 YP_876976.1 CDS NT01CX_0870 NC_008593.1 868 1080 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 868..1080 Clostridium novyi NT 4541822 YP_876977.1 CDS NT01CX_0871 NC_008593.1 1099 1839 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1099..1839 Clostridium novyi NT 4541079 YP_876978.1 CDS NT01CX_0872 NC_008593.1 1903 2532 D identified by match to protein family HMM PF01424; R3H domain-containing protein 1903..2532 Clostridium novyi NT 4539776 YP_876979.1 CDS trmE NC_008593.1 2594 3973 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2594..3973 Clostridium novyi NT 4541540 YP_876980.1 CDS gidA NC_008593.1 3986 5884 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3986..5884 Clostridium novyi NT 4540508 YP_876981.1 CDS gidB NC_008593.1 5885 6616 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5885..6616 Clostridium novyi NT 4541197 YP_876982.1 CDS NT01CX_0876 NC_008593.1 6709 7488 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; spoOJ protein 6709..7488 Clostridium novyi NT 4540814 YP_876983.1 CDS NT01CX_0877 NC_008593.1 7694 8479 D identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj 7694..8479 Clostridium novyi NT 4539641 YP_876984.1 CDS NT01CX_0878 NC_008593.1 8472 9317 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 8472..9317 Clostridium novyi NT 4539643 YP_876985.1 CDS NT01CX_0879 NC_008593.1 9363 9869 D hypothetical protein 9363..9869 Clostridium novyi NT 4541905 YP_876986.1 CDS NT01CX_0880 NC_008593.1 9911 10528 R identified by match to protein family HMM PF06866; hypothetical protein complement(9911..10528) Clostridium novyi NT 4541233 YP_876987.1 CDS NT01CX_0881 NC_008593.1 10616 11248 R identified by match to protein family HMM PF01810; LysE type translocator complement(10616..11248) Clostridium novyi NT 4540394 YP_876988.1 CDS NT01CX_0882 NC_008593.1 11436 11651 D identified by match to protein family HMM PF06107; hypothetical protein 11436..11651 Clostridium novyi NT 4540983 YP_876989.1 CDS rpsF NC_008593.1 11787 12074 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 11787..12074 Clostridium novyi NT 4540113 YP_876990.1 CDS NT01CX_0884 NC_008593.1 12086 12532 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA binding protein 12086..12532 Clostridium novyi NT 4540437 YP_876991.1 CDS rpsR NC_008593.1 12573 12809 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 12573..12809 Clostridium novyi NT 4541318 YP_876992.1 CDS NT01CX_0886 NC_008593.1 12963 13274 D hypothetical protein 12963..13274 Clostridium novyi NT 4539648 YP_876993.1 CDS NT01CX_0887 NC_008593.1 13290 14291 D hypothetical protein 13290..14291 Clostridium novyi NT 4541832 YP_876994.1 CDS NT01CX_0888 NC_008593.1 14293 16278 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 14293..16278 Clostridium novyi NT 4540849 YP_876995.1 CDS rplI NC_008593.1 16280 16723 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 16280..16723 Clostridium novyi NT 4540221 YP_876996.1 CDS NT01CX_0890 NC_008593.1 16899 18695 D identified by match to protein family HMM PF00004; match to protein family HMM PF05362; ATP-dependent protease LA 16899..18695 Clostridium novyi NT 4539879 YP_876997.1 CDS dnaB NC_008593.1 18723 20057 D unwinds double stranded DNA; replicative DNA helicase 18723..20057 Clostridium novyi NT 4539971 YP_876998.1 CDS NT01CX_0892 NC_008593.1 20094 20531 R identified by match to protein family HMM PF00011; small heat shock protein complement(20094..20531) Clostridium novyi NT 4540427 YP_876999.1 CDS NT01CX_0894 NC_008593.1 21127 21984 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 21127..21984 Clostridium novyi NT 4540791 YP_877000.1 CDS NT01CX_0895 NC_008593.1 22003 22839 D identified by match to protein family HMM PF02645; DegV family protein 22003..22839 Clostridium novyi NT 4540225 YP_877001.1 CDS NT01CX_0896 NC_008593.1 23081 24370 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 23081..24370 Clostridium novyi NT 4539635 YP_877002.1 CDS NT01CX_0897 NC_008593.1 24391 25881 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 24391..25881 Clostridium novyi NT 4541855 YP_877003.1 CDS NT01CX_0898 NC_008593.1 25981 26967 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein 25981..26967 Clostridium novyi NT 4540641 YP_877004.1 CDS NT01CX_0899 NC_008593.1 26980 27192 D hypothetical protein 26980..27192 Clostridium novyi NT 4541541 YP_877005.1 CDS NT01CX_0900 NC_008593.1 27384 27620 D hypothetical protein 27384..27620 Clostridium novyi NT 4540851 YP_877006.1 CDS proA NC_008593.1 27764 29017 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(27764..29017) Clostridium novyi NT 4541291 YP_877007.1 CDS proB NC_008593.1 29030 30169 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(29030..30169) Clostridium novyi NT 4539605 YP_877008.1 CDS proC NC_008593.1 30320 31126 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 30320..31126 Clostridium novyi NT 4540108 YP_877009.1 CDS NT01CX_0904 NC_008593.1 31463 32875 D NAD(FAD)-utilizing dehydrogenase 31463..32875 Clostridium novyi NT 4541196 YP_877010.1 CDS purA NC_008593.1 32963 34246 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 32963..34246 Clostridium novyi NT 4540634 YP_877011.1 CDS NT01CX_0906 NC_008593.1 34314 34505 D hypothetical protein 34314..34505 Clostridium novyi NT 4539885 YP_877012.1 CDS NT01CX_0907 NC_008593.1 34609 35361 D identified by match to protein family HMM PF01643; acyl-acyl carrier protein thioesterase 34609..35361 Clostridium novyi NT 4540908 YP_877013.1 CDS NT01CX_0908 NC_008593.1 35456 36700 R identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein complement(35456..36700) Clostridium novyi NT 4539625 YP_877014.1 CDS NT01CX_0917 NC_008593.1 37946 38938 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(37946..38938) Clostridium novyi NT 4540124 YP_877015.1 CDS NT01CX_0918 NC_008593.1 38931 39923 R identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD complement(38931..39923) Clostridium novyi NT 4541226 YP_877016.1 CDS NT01CX_0919 NC_008593.1 40078 41808 D hypothetical protein 40078..41808 Clostridium novyi NT 4541940 YP_877017.1 CDS NT01CX_0920 NC_008593.1 42030 42500 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 42030..42500 Clostridium novyi NT 4539644 YP_877018.1 CDS NT01CX_0921 NC_008593.1 42506 43480 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 42506..43480 Clostridium novyi NT 4541887 YP_877019.1 CDS acpP NC_008593.1 43514 43744 D identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein 43514..43744 Clostridium novyi NT 4540911 YP_877020.1 CDS NT01CX_0923 NC_008593.1 43804 44754 D identified by match to protein family HMM PF03060; enoyl-ACP reductase 43804..44754 Clostridium novyi NT 4541912 YP_877021.1 CDS fabD NC_008593.1 44747 45691 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 44747..45691 Clostridium novyi NT 4539931 YP_877022.1 CDS fabG NC_008593.1 45691 46443 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 45691..46443 Clostridium novyi NT 4539687 YP_877023.1 CDS NT01CX_0926 NC_008593.1 46457 47698 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 46457..47698 Clostridium novyi NT 4541718 YP_877024.1 CDS accB NC_008593.1 47702 48190 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 47702..48190 Clostridium novyi NT 4541902 YP_877025.1 CDS fabZ NC_008593.1 48203 48631 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 48203..48631 Clostridium novyi NT 4541778 YP_877026.1 CDS accC NC_008593.1 48640 49983 D identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; biotin carboxylase 48640..49983 Clostridium novyi NT 4539715 YP_877027.1 CDS accD NC_008593.1 50029 50892 D identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 50029..50892 Clostridium novyi NT 4540436 YP_877028.1 CDS accA NC_008593.1 50916 51761 D identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 50916..51761 Clostridium novyi NT 4541521 YP_877029.1 CDS NT01CX_0932 NC_008593.1 51944 52786 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 51944..52786 Clostridium novyi NT 4541230 YP_877030.1 CDS NT01CX_0933 NC_008593.1 52818 53516 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 52818..53516 Clostridium novyi NT 4540565 YP_877031.1 CDS NT01CX_0934 NC_008593.1 53509 54231 D identified by match to protein family HMM PF00005; ABC transporter 53509..54231 Clostridium novyi NT 4540623 YP_877032.1 CDS NT01CX_0935 NC_008593.1 54455 55078 D similar to YJCM B. subtilis; hypothetical protein 54455..55078 Clostridium novyi NT 4541816 YP_877033.1 CDS NT01CX_0936 NC_008593.1 55356 57710 D identified by match to protein family HMM PF06733; hypothetical protein 55356..57710 Clostridium novyi NT 4541138 YP_877034.1 CDS NT01CX_0937 NC_008593.1 57986 59140 R identified by match to protein family HMM PF00872; transposase mutator family protein complement(57986..59140) Clostridium novyi NT 4539980 YP_877035.1 CDS NT01CX_0938 NC_008593.1 59367 60806 R ISBma2, transposase complement(59367..60806) Clostridium novyi NT 4540269 YP_877036.1 CDS NT01CX_0939 NC_008593.1 60987 61307 R resolvase complement(60987..61307) Clostridium novyi NT 4539788 YP_877037.1 CDS NT01CX_0940 NC_008593.1 61794 62249 D hypothetical protein 61794..62249 Clostridium novyi NT 4541481 YP_877038.1 CDS NT01CX_0941 NC_008593.1 63044 63796 R hypothetical protein complement(63044..63796) Clostridium novyi NT 4541922 YP_877039.1 CDS cinA NC_008593.1 64054 65298 D identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 64054..65298 Clostridium novyi NT 4541374 YP_877040.1 CDS NT01CX_0943 NC_008593.1 65481 66644 D identified by match to protein family HMM PF00375; Sodium:dicarboxylate symporter family protein 65481..66644 Clostridium novyi NT 4540145 YP_877041.1 CDS NT01CX_0944 NC_008593.1 66669 67871 R identified by match to protein family HMM PF00082; subtilase family protein complement(66669..67871) Clostridium novyi NT 4540651 YP_877042.1 CDS NT01CX_0945 NC_008593.1 67969 68415 R identified by match to protein family HMM PF04657; hypothetical protein complement(67969..68415) Clostridium novyi NT 4539974 YP_877043.1 CDS NT01CX_0946 NC_008593.1 68484 68969 R hypothetical protein complement(68484..68969) Clostridium novyi NT 4540317 YP_877044.1 CDS NT01CX_0947 NC_008593.1 69119 69667 R hypothetical protein complement(69119..69667) Clostridium novyi NT 4539851 YP_877045.1 CDS murA NC_008593.1 70069 71325 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 70069..71325 Clostridium novyi NT 4540426 YP_877046.1 CDS NT01CX_0949 NC_008593.1 71345 72133 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 71345..72133 Clostridium novyi NT 4539632 YP_877047.1 CDS NT01CX_0950 NC_008593.1 72148 72714 D lipoprotein 72148..72714 Clostridium novyi NT 4541040 YP_877048.1 CDS NT01CX_0951 NC_008593.1 72748 73251 D Sec-fragment; identified by match to protein family HMM PF02810; hypothetical protein 72748..73251 Clostridium novyi NT 4540590 YP_877049.1 CDS NT01CX_0952 NC_008593.1 73400 74263 D identified by match to protein family HMM PF00072; chemotaxis response regulator 73400..74263 Clostridium novyi NT 4540445 YP_877050.1 CDS NT01CX_0953 NC_008593.1 74263 74742 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 74263..74742 Clostridium novyi NT 4541207 YP_877051.1 CDS NT01CX_0954 NC_008593.1 75009 76055 D regulatory protein 75009..76055 Clostridium novyi NT 4540379 YP_877052.1 CDS panE NC_008593.1 76088 77017 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 76088..77017 Clostridium novyi NT 4540971 YP_877053.1 CDS NT01CX_0956 NC_008593.1 77161 78324 D identified by match to protein family HMM PF00376; HTH-type transcriptional activator tipA 77161..78324 Clostridium novyi NT 4540506 YP_877054.1 CDS NT01CX_0957 NC_008593.1 78443 79405 D hypothetical protein 78443..79405 Clostridium novyi NT 4539676 YP_877055.1 CDS NT01CX_0958 NC_008593.1 79608 80348 D identified by match to protein family HMM PF00132; maltose transacetylase 79608..80348 Clostridium novyi NT 4541648 YP_877056.1 CDS NT01CX_0959 NC_008593.1 80500 81420 D identified by match to protein family HMM PF00892; integral membrane protein 80500..81420 Clostridium novyi NT 4539853 YP_877057.1 CDS NT01CX_0960 NC_008593.1 81487 82107 R hypothetical protein complement(81487..82107) Clostridium novyi NT 4540581 YP_877058.1 CDS NT01CX_0961 NC_008593.1 82283 82957 D identified by match to protein family HMM PF01381; transcriptional regulator 82283..82957 Clostridium novyi NT 4539884 YP_877059.1 CDS phnA NC_008593.1 83083 83424 D identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA 83083..83424 Clostridium novyi NT 4541701 YP_877060.1 CDS NT01CX_0963 NC_008593.1 83701 84717 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 83701..84717 Clostridium novyi NT 4541013 YP_877061.1 CDS NT01CX_0964 NC_008593.1 84729 85829 D identified by match to protein family HMM PF00005; ABC transporter ATPase 84729..85829 Clostridium novyi NT 4541062 YP_877062.1 CDS NT01CX_0965 NC_008593.1 85860 87203 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 85860..87203 Clostridium novyi NT 4540395 YP_877063.1 CDS NT01CX_0966 NC_008593.1 87257 88123 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 87257..88123 Clostridium novyi NT 4540037 YP_877064.1 CDS NT01CX_0967 NC_008593.1 88123 88950 D identified by match to protein family HMM PF00528; sugar ABC transporter permease 88123..88950 Clostridium novyi NT 4541713 YP_877065.1 CDS NT01CX_0968 NC_008593.1 89062 91119 D identified by match to protein family HMM PF01055; alpha-glucosidase 89062..91119 Clostridium novyi NT 4540579 YP_877066.1 CDS malQ NC_008593.1 91138 92616 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 91138..92616 Clostridium novyi NT 4541639 YP_877067.1 CDS NT01CX_0970 NC_008593.1 92624 94999 D identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 92624..94999 Clostridium novyi NT 4540862 YP_877068.1 CDS NT01CX_0971 NC_008593.1 95085 96116 R ISBma2, transposase complement(95085..96116) Clostridium novyi NT 4541475 YP_877069.1 CDS NT01CX_0972 NC_008593.1 96203 96523 R ISBma2, transposase complement(96203..96523) Clostridium novyi NT 4539794 YP_877070.1 CDS NT01CX_0973 NC_008593.1 96696 97280 R identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 complement(96696..97280) Clostridium novyi NT 4540032 YP_877071.1 CDS NT01CX_0974 NC_008593.1 97625 98281 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite reductase [NAD(P)H], large subunit 97625..98281 Clostridium novyi NT 4539926 YP_877072.1 CDS NT01CX_0975 NC_008593.1 98457 98930 D hypothetical protein 98457..98930 Clostridium novyi NT 4540328 YP_877073.1 CDS NT01CX_0976 NC_008593.1 98930 99628 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 98930..99628 Clostridium novyi NT 4541007 YP_877074.1 CDS NT01CX_0977 NC_008593.1 99648 101093 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 99648..101093 Clostridium novyi NT 4540236 YP_877075.1 CDS NT01CX_0978 NC_008593.1 101108 101944 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 101108..101944 Clostridium novyi NT 4539692 YP_877076.1 CDS NT01CX_0979 NC_008593.1 102065 103261 D identified by match to protein family HMM PF00882; match to protein family HMM PF01477; phospholipase C (PLC) (phosphatidylcholinecholinephosphohydrolase) (gamma-toxin) 102065..103261 Clostridium novyi NT 4541971 YP_877077.1 CDS NT01CX_0980 NC_008593.1 103404 104363 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 103404..104363 Clostridium novyi NT 4541293 YP_877078.1 CDS NT01CX_0981 NC_008593.1 104364 104552 D hypothetical protein 104364..104552 Clostridium novyi NT 4539876 YP_877079.1 CDS NT01CX_0982 NC_008593.1 104600 105655 D identified by match to protein family HMM PF05651; hypothetical protein 104600..105655 Clostridium novyi NT 4541145 YP_877080.1 CDS NT01CX_0983 NC_008593.1 105755 107023 D identified by match to protein family HMM PF02447; GntP family permease 105755..107023 Clostridium novyi NT 4541706 YP_877081.1 CDS NT01CX_0984 NC_008593.1 107129 108256 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 107129..108256 Clostridium novyi NT 4541952 YP_877082.1 CDS nifL NC_008593.1 108432 110207 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; nitrogen fixation positive activator 108432..110207 Clostridium novyi NT 4540382 YP_877083.1 CDS NT01CX_0986 NC_008593.1 110273 110845 R identified by match to protein family HMM PF05067; CotJC protein complement(110273..110845) Clostridium novyi NT 4540866 YP_877084.1 CDS NT01CX_0987 NC_008593.1 110867 111145 R spore coat peptide assembly protein cotJB complement(110867..111145) Clostridium novyi NT 4540462 YP_877085.1 CDS NT01CX_0988 NC_008593.1 111148 111372 R hypothetical protein complement(111148..111372) Clostridium novyi NT 4540237 YP_877086.1 CDS NT01CX_0989 NC_008593.1 111527 113404 D hypothetical protein 111527..113404 Clostridium novyi NT 4541643 YP_877087.1 CDS NT01CX_0990 NC_008593.1 113416 114630 D hypothetical protein 113416..114630 Clostridium novyi NT 4540507 YP_877088.1 CDS NT01CX_0991 NC_008593.1 114634 115206 D hypothetical protein 114634..115206 Clostridium novyi NT 4540617 YP_877089.1 CDS NT01CX_0992 NC_008593.1 115276 115518 R hypothetical protein complement(115276..115518) Clostridium novyi NT 4540639 YP_877090.1 CDS NT01CX_0993 NC_008593.1 115658 115885 D identified by match to protein family HMM PF01381; transcriptional regulator 115658..115885 Clostridium novyi NT 4540339 YP_877091.1 CDS NT01CX_0994 NC_008593.1 116140 116502 D hypothetical protein 116140..116502 Clostridium novyi NT 4541959 YP_877092.1 CDS NT01CX_0995 NC_008593.1 116556 116927 D hypothetical protein 116556..116927 Clostridium novyi NT 4540373 YP_877093.1 CDS NT01CX_0996 NC_008593.1 117064 117393 D hypothetical protein 117064..117393 Clostridium novyi NT 4539932 YP_877094.1 CDS NT01CX_0997 NC_008593.1 117605 119191 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase 117605..119191 Clostridium novyi NT 4540093 YP_877095.1 CDS NT01CX_0998 NC_008593.1 119245 119592 R HD-GYP hydrolase domain-containing protein complement(119245..119592) Clostridium novyi NT 4541735 YP_877096.1 CDS NT01CX_0999 NC_008593.1 119631 120317 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD-GYP hydrolase domain-containing protein complement(119631..120317) Clostridium novyi NT 4540244 YP_877097.1 CDS NT01CX_1000 NC_008593.1 120602 122401 D identified by match to protein family HMM PF00015; match to protein family HMM PF07700; methyl-accepting chemotaxis protein 120602..122401 Clostridium novyi NT 4541058 YP_877098.1 CDS NT01CX_1001 NC_008593.1 122425 123324 R similar to PflX (pyruvate formate lyase activating protein); identified by match to protein family HMM PF04055; Fe-S protein complement(122425..123324) Clostridium novyi NT 4540239 YP_877099.1 CDS NT01CX_1002 NC_008593.1 123363 124412 R hypothetical protein complement(123363..124412) Clostridium novyi NT 4541691 YP_877100.1 CDS NT01CX_1003 NC_008593.1 124539 125618 D hypothetical protein 124539..125618 Clostridium novyi NT 4541292 YP_877101.1 CDS NT01CX_1004 NC_008593.1 125706 126632 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein 125706..126632 Clostridium novyi NT 4541539 YP_877102.1 CDS NT01CX_1005 NC_008593.1 126682 127338 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase complement(126682..127338) Clostridium novyi NT 4540397 YP_877103.1 CDS NT01CX_1006 NC_008593.1 127416 128762 R identified by match to protein family HMM PF00037; match to protein family HMM PF02906; hydrogenase complement(127416..128762) Clostridium novyi NT 4541979 YP_877104.1 CDS NT01CX_1008 NC_008593.1 129134 129448 R hypothetical protein complement(129134..129448) Clostridium novyi NT 4541285 YP_877105.1 CDS NT01CX_1009 NC_008593.1 129665 130435 D identified by match to protein family HMM PF00005; zinc ABC transporter ATP-binding protein 129665..130435 Clostridium novyi NT 4540842 YP_877106.1 CDS NT01CX_1010 NC_008593.1 130428 131255 D identified by match to protein family HMM PF00950; zinc ABC transporter permease 130428..131255 Clostridium novyi NT 4540215 YP_877107.1 CDS murC NC_008593.1 131278 132654 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(131278..132654) Clostridium novyi NT 4540226 YP_877108.1 CDS purR NC_008593.1 132926 133744 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 132926..133744 Clostridium novyi NT 4541721 YP_877109.1 CDS NT01CX_1013 NC_008593.1 133822 134124 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 133822..134124 Clostridium novyi NT 4540853 YP_877110.1 CDS glmU NC_008593.1 134332 135711 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 134332..135711 Clostridium novyi NT 4539594 YP_877111.1 CDS NT01CX_1015 NC_008593.1 135757 136713 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 135757..136713 Clostridium novyi NT 4539695 YP_877112.1 CDS NT01CX_1016 NC_008593.1 136901 137587 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 136901..137587 Clostridium novyi NT 4541874 YP_877113.1 CDS NT01CX_1017 NC_008593.1 137588 139000 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory transduction histidine kinase 137588..139000 Clostridium novyi NT 4541851 YP_877114.1 CDS NT01CX_1018 NC_008593.1 139038 140183 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; periplasmic trypsin-like serine protease 139038..140183 Clostridium novyi NT 4541752 YP_877115.1 CDS NT01CX_1019 NC_008593.1 140323 140889 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 140323..140889 Clostridium novyi NT 4540222 YP_877116.1 CDS NT01CX_1020 NC_008593.1 140913 144425 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 140913..144425 Clostridium novyi NT 4540448 YP_877117.1 CDS prsA NC_008593.1 144480 145526 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 144480..145526 Clostridium novyi NT 4541941 YP_877118.1 CDS NT01CX_1022 NC_008593.1 145937 146488 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; stage V sporulation protein T 145937..146488 Clostridium novyi NT 4539619 YP_877119.1 CDS NT01CX_1023 NC_008593.1 146586 148115 D stage V sporulation protein B 146586..148115 Clostridium novyi NT 4540110 YP_877120.1 CDS NT01CX_1024 NC_008593.1 148147 149592 D identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; tetrapyrrole methylase family protein 148147..149592 Clostridium novyi NT 4540036 YP_877121.1 CDS NT01CX_1025 NC_008593.1 149700 149978 D identified by match to protein family HMM PF00216; DNA binding protein HU 149700..149978 Clostridium novyi NT 4540812 YP_877122.1 CDS NT01CX_1026 NC_008593.1 150068 150337 D identified by match to protein family HMM PF01479; S4 domain-containing protein 150068..150337 Clostridium novyi NT 4540068 YP_877123.1 CDS NT01CX_1027 NC_008593.1 150453 150746 D similar to YABP B. subtilis; hypothetical protein 150453..150746 Clostridium novyi NT 4541736 YP_877124.1 CDS NT01CX_1028 NC_008593.1 150752 151189 D similar to YABQ B. subtilis; hypothetical protein 150752..151189 Clostridium novyi NT 4541004 YP_877125.1 CDS NT01CX_1029 NC_008593.1 151226 151498 D identified by match to protein family HMM PF04977; septum formation initiator superfamily protein 151226..151498 Clostridium novyi NT 4540838 YP_877126.1 CDS eif2A NC_008593.1 151553 151960 D identified by match to protein family HMM PF00575; hypothetical protein 151553..151960 Clostridium novyi NT 4539680 YP_877127.1 CDS NT01CX_1037 NC_008593.1 153014 155410 D identified by match to protein family HMM PF07228; stage II sporulation protein E 153014..155410 Clostridium novyi NT 4541934 YP_877128.1 CDS NT01CX_1038 NC_008593.1 155546 156940 D identified by match to protein family HMM PF01171; cell cycle protein MesJ 155546..156940 Clostridium novyi NT 4540632 YP_877129.1 CDS NT01CX_1039 NC_008593.1 156942 157481 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 156942..157481 Clostridium novyi NT 4541746 YP_877130.1 CDS ftsH NC_008593.1 157552 159582 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 157552..159582 Clostridium novyi NT 4540305 YP_877131.1 CDS NT01CX_1041 NC_008593.1 159725 160111 D identified by match to protein family HMM PF03061; hypothetical protein 159725..160111 Clostridium novyi NT 4541503 YP_877132.1 CDS NT01CX_1042 NC_008593.1 160213 161883 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 160213..161883 Clostridium novyi NT 4541815 YP_877133.1 CDS NT01CX_1043 NC_008593.1 162007 162786 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 162007..162786 Clostridium novyi NT 4541843 YP_877134.1 CDS NT01CX_1044 NC_008593.1 162795 163760 D identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; NifR3 family protein 162795..163760 Clostridium novyi NT 4539721 YP_877135.1 CDS greA NC_008593.1 163989 164468 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 163989..164468 Clostridium novyi NT 4539779 YP_877136.1 CDS lysS NC_008593.1 164518 166050 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 164518..166050 Clostridium novyi NT 4541531 YP_877137.1 CDS glyS NC_008593.1 166535 167926 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 166535..167926 Clostridium novyi NT 4540132 YP_877138.1 CDS murD NC_008593.1 168292 169668 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 168292..169668 Clostridium novyi NT 4540648 YP_877140.1 CDS fusA NC_008593.1 175569 177647 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 175569..177647 Clostridium novyi NT 4539649 YP_877141.1 CDS NT01CX_1057 NC_008593.1 177781 178371 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin complement(177781..178371) Clostridium novyi NT 4541900 YP_877142.1 CDS NT01CX_1058 NC_008593.1 178530 178772 D hypothetical protein 178530..178772 Clostridium novyi NT 4541689 YP_877143.1 CDS NT01CX_1059 NC_008593.1 178729 178923 D hypothetical protein 178729..178923 Clostridium novyi NT 4540500 YP_877144.1 CDS hisZ NC_008593.1 179154 180419 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 179154..180419 Clostridium novyi NT 4541686 YP_877145.1 CDS hisG NC_008593.1 180445 181083 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 180445..181083 Clostridium novyi NT 4541259 YP_877146.1 CDS hisD NC_008593.1 181095 182387 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 181095..182387 Clostridium novyi NT 4541775 YP_877147.1 CDS hisC NC_008593.1 182387 183457 D identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 182387..183457 Clostridium novyi NT 4539939 YP_877148.1 CDS NT01CX_1064 NC_008593.1 183438 184028 D identified by match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase (IGPD) 183438..184028 Clostridium novyi NT 4539586 YP_877149.1 CDS hisA NC_008593.1 184048 184764 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 184048..184764 Clostridium novyi NT 4539622 YP_877150.1 CDS hisF NC_008593.1 184776 185852 D identified by match to protein family HMM PF00977; match to protein family HMM PF01502; match to protein family HMM TIGR00735; imidazole glycerol phosphate synthase subunit HisF 184776..185852 Clostridium novyi NT 4539733 YP_877151.1 CDS hisE NC_008593.1 185926 186258 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 185926..186258 Clostridium novyi NT 4540038 YP_877152.1 CDS NT01CX_1068 NC_008593.1 186296 187735 R identified by match to protein family HMM PF00614; cardiolipin synthetase complement(186296..187735) Clostridium novyi NT 4541136 YP_877153.1 CDS NT01CX_1069 NC_008593.1 188328 189242 D identified by match to protein family HMM PF07656; hypothetical protein 188328..189242 Clostridium novyi NT 4541238 YP_877154.1 CDS NT01CX_1070 NC_008593.1 189432 190277 D hypothetical protein 189432..190277 Clostridium novyi NT 4541373 YP_877155.1 CDS panB NC_008593.1 190278 191105 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 190278..191105 Clostridium novyi NT 4541990 YP_877156.1 CDS panC NC_008593.1 191165 192016 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 191165..192016 Clostridium novyi NT 4540566 YP_877157.1 CDS panD NC_008593.1 192020 192391 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 192020..192391 Clostridium novyi NT 4540277 YP_877158.1 CDS NT01CX_1074 NC_008593.1 192481 192621 R hypothetical protein complement(192481..192621) Clostridium novyi NT 4541814 YP_877159.1 CDS NT01CX_1075 NC_008593.1 192819 193334 R hypothetical protein complement(192819..193334) Clostridium novyi NT 4540162 YP_877160.1 CDS NT01CX_1076 NC_008593.1 193589 195700 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 193589..195700 Clostridium novyi NT 4540149 YP_877161.1 CDS NT01CX_1077 NC_008593.1 195721 196215 D anaerobic ribonucleoside-triphosphate reductase activating protein 195721..196215 Clostridium novyi NT 4539615 YP_877162.1 CDS NT01CX_1078 NC_008593.1 196257 197000 R identified by match to protein family HMM PF00515; hypothetical protein complement(196257..197000) Clostridium novyi NT 4541728 YP_877163.1 CDS NT01CX_1079 NC_008593.1 197170 198555 D divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 197170..198555 Clostridium novyi NT 4539689 YP_877164.1 CDS NT01CX_1080 NC_008593.1 198677 199918 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 198677..199918 Clostridium novyi NT 4541987 YP_877165.1 CDS NT01CX_1081 NC_008593.1 200097 200708 D similar to YPAA B. subtilis; hypothetical protein 200097..200708 Clostridium novyi NT 4541478 YP_877166.1 CDS NT01CX_1082 NC_008593.1 200850 201848 D identified by match to protein family HMM PF03576; T4 family peptidase 200850..201848 Clostridium novyi NT 4539761 YP_877167.1 CDS NT01CX_1083 NC_008593.1 202087 202638 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 202087..202638 Clostridium novyi NT 4539914 YP_877168.1 CDS NT01CX_1084 NC_008593.1 202869 203327 D identified by match to protein family HMM PF05848; transcription regulator ctsR 202869..203327 Clostridium novyi NT 4541742 YP_877169.1 CDS NT01CX_1085 NC_008593.1 203395 203919 D identified by match to protein family HMM PF02151; hypothetical protein 203395..203919 Clostridium novyi NT 4541726 YP_877170.1 CDS NT01CX_1086 NC_008593.1 203931 204965 D identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 203931..204965 Clostridium novyi NT 4540209 YP_877171.1 CDS NT01CX_1087 NC_008593.1 204994 207435 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; negative regulator of genetic competence clpC/mecB 204994..207435 Clostridium novyi NT 4541257 YP_877172.1 CDS radA NC_008593.1 207599 208960 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 207599..208960 Clostridium novyi NT 4540916 YP_877173.1 CDS NT01CX_1089 NC_008593.1 208992 210059 D non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 208992..210059 Clostridium novyi NT 4541882 YP_877174.1 CDS NT01CX_1090 NC_008593.1 210096 210497 R hypothetical protein complement(210096..210497) Clostridium novyi NT 4540381 YP_877175.1 CDS NT01CX_1091 NC_008593.1 210803 211882 D contains a homolog of PilT-like; identified by match to protein family HMM PF01850; match to protein family HMM PF01938; membrane-associated protein 210803..211882 Clostridium novyi NT 4539599 YP_877176.1 CDS ispD NC_008593.1 211905 212600 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 211905..212600 Clostridium novyi NT 4540203 YP_877177.1 CDS cysS NC_008593.1 212807 214207 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 212807..214207 Clostridium novyi NT 4540915 YP_877178.1 CDS NT01CX_1094 NC_008593.1 214312 214725 D similar to YACZ B. subtilis homolog; identified by match to protein family HMM PF05948; hypothetical protein 214312..214725 Clostridium novyi NT 4541649 YP_877179.1 CDS thyX NC_008593.1 214749 215483 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 214749..215483 Clostridium novyi NT 4541508 YP_877180.1 CDS NT01CX_1096 NC_008593.1 215516 216313 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 215516..216313 Clostridium novyi NT 4541682 YP_877181.1 CDS NT01CX_1097 NC_008593.1 216323 216829 D identified by match to protein family HMM PF05991; hypothetical protein 216323..216829 Clostridium novyi NT 4540246 YP_877182.1 CDS NT01CX_1098 NC_008593.1 216937 217596 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 216937..217596 Clostridium novyi NT 4541907 YP_877183.1 CDS tuf NC_008593.1 217897 219078 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 217897..219078 Clostridium novyi NT 4541789 YP_877184.1 CDS secE NC_008593.1 219566 219787 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 219566..219787 Clostridium novyi NT 4541194 YP_877185.1 CDS nusG NC_008593.1 219908 220429 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 219908..220429 Clostridium novyi NT 4541055 YP_877186.1 CDS rplK NC_008593.1 220503 220928 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 220503..220928 Clostridium novyi NT 4541651 YP_877187.1 CDS rplA NC_008593.1 220982 221680 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 220982..221680 Clostridium novyi NT 4541192 YP_877188.1 CDS rplJ NC_008593.1 221878 222381 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 221878..222381 Clostridium novyi NT 4539756 YP_877189.1 CDS rplL NC_008593.1 222428 222793 D identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855; 50S ribosomal protein L7/L12 222428..222793 Clostridium novyi NT 4540202 YP_877190.1 CDS rpoB NC_008593.1 223062 226787 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 223062..226787 Clostridium novyi NT 4539979 YP_877191.1 CDS rpoC NC_008593.1 226787 230344 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 226787..230344 Clostridium novyi NT 4539922 YP_877192.1 CDS NT01CX_1109 NC_008593.1 230467 230709 D ribosomal protein L7AE family protein 230467..230709 Clostridium novyi NT 4539604 YP_877193.1 CDS rpsL NC_008593.1 230765 231142 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 230765..231142 Clostridium novyi NT 4539610 YP_877194.1 CDS rpsG NC_008593.1 231274 231744 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 231274..231744 Clostridium novyi NT 4541844 YP_877195.1 CDS fusA NC_008593.1 231857 233920 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 231857..233920 Clostridium novyi NT 4541534 YP_877196.1 CDS NT01CX_1113 NC_008593.1 233985 235166 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 233985..235166 Clostridium novyi NT 4539673 YP_877197.1 CDS rpsJ NC_008593.1 235577 235885 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 235577..235885 Clostridium novyi NT 4541477 YP_877198.1 CDS rplC NC_008593.1 235951 236580 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 235951..236580 Clostridium novyi NT 4541045 YP_877199.1 CDS rplD NC_008593.1 236606 237226 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 236606..237226 Clostridium novyi NT 4541529 YP_877200.1 CDS rplW NC_008593.1 237226 237516 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 237226..237516 Clostridium novyi NT 4539889 YP_877201.1 CDS rplB NC_008593.1 237577 238410 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 237577..238410 Clostridium novyi NT 4540158 YP_877202.1 CDS rpsS NC_008593.1 238483 238767 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 238483..238767 Clostridium novyi NT 4541771 YP_877203.1 CDS rplV NC_008593.1 238789 239124 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 238789..239124 Clostridium novyi NT 4541723 YP_877204.1 CDS rpsC NC_008593.1 239140 239805 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 239140..239805 Clostridium novyi NT 4540821 YP_877205.1 CDS rplP NC_008593.1 239823 240266 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 239823..240266 Clostridium novyi NT 4540370 YP_877206.1 CDS rpmC NC_008593.1 240256 240468 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 240256..240468 Clostridium novyi NT 4541255 YP_877207.1 CDS rpsQ NC_008593.1 240491 240745 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 240491..240745 Clostridium novyi NT 4540208 YP_877208.1 CDS rplN NC_008593.1 240773 241147 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 240773..241147 Clostridium novyi NT 4539713 YP_877209.1 CDS rplX NC_008593.1 241164 241481 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 241164..241481 Clostridium novyi NT 4541640 YP_877210.1 CDS rplE NC_008593.1 241504 242043 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 241504..242043 Clostridium novyi NT 4540458 YP_877211.1 CDS rpsN NC_008593.1 242059 242244 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 242059..242244 Clostridium novyi NT 4540267 YP_877212.1 CDS rpsH NC_008593.1 242276 242671 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 242276..242671 Clostridium novyi NT 4541050 YP_877213.1 CDS rplF NC_008593.1 242702 243241 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 242702..243241 Clostridium novyi NT 4541970 YP_877214.1 CDS rplR NC_008593.1 243272 243634 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 243272..243634 Clostridium novyi NT 4540150 YP_877215.1 CDS rpsE NC_008593.1 243651 244148 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 243651..244148 Clostridium novyi NT 4540045 YP_877216.1 CDS rpmD NC_008593.1 244162 244341 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 244162..244341 Clostridium novyi NT 4541769 YP_877217.1 CDS rplO NC_008593.1 244374 244814 D late assembly protein; 50S ribosomal protein L15 244374..244814 Clostridium novyi NT 4539772 YP_877218.1 CDS secY NC_008593.1 244816 246090 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 244816..246090 Clostridium novyi NT 4541675 YP_877219.1 CDS adk NC_008593.1 246118 246768 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 246118..246768 Clostridium novyi NT 4539598 YP_877220.1 CDS NT01CX_1137 NC_008593.1 246769 247515 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 246769..247515 Clostridium novyi NT 4539852 YP_877221.1 CDS NT01CX_1138 NC_008593.1 247529 247810 D hypothetical protein 247529..247810 Clostridium novyi NT 4539606 YP_877222.1 CDS infA NC_008593.1 247818 248036 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00008; translation initiation factor IF-1 247818..248036 Clostridium novyi NT 4540970 YP_877223.1 CDS rpmJ NC_008593.1 248052 248165 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 248052..248165 Clostridium novyi NT 4541383 YP_877224.1 CDS rpsM NC_008593.1 248321 248692 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 248321..248692 Clostridium novyi NT 4539774 YP_877225.1 CDS rpsK NC_008593.1 248709 249104 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 248709..249104 Clostridium novyi NT 4541057 YP_877226.1 CDS rpsD NC_008593.1 249132 249752 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 249132..249752 Clostridium novyi NT 4539925 YP_877227.1 CDS rpoA NC_008593.1 249817 250764 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 249817..250764 Clostridium novyi NT 4540758 YP_877228.1 CDS rplQ NC_008593.1 250778 251119 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 250778..251119 Clostridium novyi NT 4540859 YP_877229.1 CDS NT01CX_1146 NC_008593.1 251204 252046 D with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 251204..252046 Clostridium novyi NT 4539877 YP_877230.1 CDS cbiO NC_008593.1 252031 252897 D with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 252031..252897 Clostridium novyi NT 4541070 YP_877231.1 CDS cbiQ NC_008593.1 252890 253702 D identified by match to protein family HMM PF02361; cobalt transport protein 252890..253702 Clostridium novyi NT 4540509 YP_877232.1 CDS truA NC_008593.1 253737 254477 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 253737..254477 Clostridium novyi NT 4541183 YP_877233.1 CDS rplM NC_008593.1 254650 255084 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 254650..255084 Clostridium novyi NT 4540366 YP_877234.1 CDS rpsI NC_008593.1 255115 255507 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 255115..255507 Clostridium novyi NT 4539970 YP_877235.1 CDS NT01CX_1152 NC_008593.1 255807 256517 D identified by match to protein family HMM PF01520; germination-specific N-acetylmuramoyl-L-alanine amidase 255807..256517 Clostridium novyi NT 4541972 YP_877236.1 CDS NT01CX_1153 NC_008593.1 256665 257195 D citX protein 256665..257195 Clostridium novyi NT 4541717 YP_877237.1 CDS NT01CX_1154 NC_008593.1 257239 258849 R identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi cotransporter family protein complement(257239..258849) Clostridium novyi NT 4541543 YP_877238.1 CDS ptsI NC_008593.1 259234 260850 D identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 259234..260850 Clostridium novyi NT 4540094 YP_877239.1 CDS NT01CX_1156 NC_008593.1 261046 261768 D lipoprotein 261046..261768 Clostridium novyi NT 4541764 YP_877240.1 CDS NT01CX_1157 NC_008593.1 261795 263078 D identified by match to protein family HMM PF00515; hypothetical protein 261795..263078 Clostridium novyi NT 4539593 YP_877241.1 CDS NT01CX_1158 NC_008593.1 263297 263614 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 263297..263614 Clostridium novyi NT 4541201 YP_877242.1 CDS trxB NC_008593.1 263677 264525 D identified by match to protein family HMM PF00070; thioredoxin reductase 263677..264525 Clostridium novyi NT 4541937 YP_877243.1 CDS NT01CX_1160 NC_008593.1 264587 265117 R spore cortex-lytic enzyme (SCLE) complement(264587..265117) Clostridium novyi NT 4540101 YP_877244.1 CDS NT01CX_1161 NC_008593.1 265203 266216 R hypothetical protein complement(265203..266216) Clostridium novyi NT 4539631 YP_877245.1 CDS NT01CX_1162 NC_008593.1 266415 267260 D identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 266415..267260 Clostridium novyi NT 4541037 YP_877246.1 CDS NT01CX_1163 NC_008593.1 267233 268522 D similar to YBBR Bacillus subtilis; hypothetical protein 267233..268522 Clostridium novyi NT 4540449 YP_877247.1 CDS NT01CX_1164 NC_008593.1 268542 270140 D FAD-dependent dehydrogenase 268542..270140 Clostridium novyi NT 4540594 YP_877248.1 CDS glmM NC_008593.1 270304 271653 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 270304..271653 Clostridium novyi NT 4541926 YP_877249.1 CDS glmS NC_008593.1 272184 274010 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 272184..274010 Clostridium novyi NT 4540273 YP_877250.1 CDS ppdK NC_008593.1 274687 277368 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 274687..277368 Clostridium novyi NT 4540193 YP_877251.1 CDS NT01CX_1168 NC_008593.1 277519 279531 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(277519..279531) Clostridium novyi NT 4541133 YP_877252.1 CDS NT01CX_1169 NC_008593.1 279669 279830 D identified by match to protein family HMM PF00301; rubredoxin 279669..279830 Clostridium novyi NT 4540802 YP_877253.1 CDS NT01CX_1170 NC_008593.1 279971 280390 D identified by match to protein family HMM PF03479; hypothetical protein 279971..280390 Clostridium novyi NT 4541490 YP_877254.1 CDS NT01CX_1171 NC_008593.1 280491 282191 D identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 280491..282191 Clostridium novyi NT 4541376 YP_877255.1 CDS NT01CX_1172 NC_008593.1 282274 282621 R hypothetical protein complement(282274..282621) Clostridium novyi NT 4539935 YP_877256.1 CDS NT01CX_1173 NC_008593.1 282770 283186 D hypothetical protein 282770..283186 Clostridium novyi NT 4540125 YP_877257.1 CDS NT01CX_1174 NC_008593.1 283398 283940 D identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor 283398..283940 Clostridium novyi NT 4539718 YP_877258.1 CDS NT01CX_1175 NC_008593.1 283944 284705 D hypothetical protein 283944..284705 Clostridium novyi NT 4539700 YP_877259.1 CDS NT01CX_1176 NC_008593.1 284838 285581 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 284838..285581 Clostridium novyi NT 4541892 YP_877260.1 CDS NT01CX_1177 NC_008593.1 285588 286001 D hypothetical protein 285588..286001 Clostridium novyi NT 4540065 YP_877261.1 CDS NT01CX_1178 NC_008593.1 285998 286834 D hypothetical protein 285998..286834 Clostridium novyi NT 4541710 YP_877262.1 CDS NT01CX_1179 NC_008593.1 286844 287779 D hypothetical protein 286844..287779 Clostridium novyi NT 4541868 YP_877263.1 CDS NT01CX_1180 NC_008593.1 287860 288057 R hypothetical protein complement(287860..288057) Clostridium novyi NT 4541535 YP_877264.1 CDS NT01CX_1181 NC_008593.1 288087 288773 R lipoprotein complement(288087..288773) Clostridium novyi NT 4540450 YP_877265.1 CDS NT01CX_1182 NC_008593.1 288968 289105 D transcriptional regulator 288968..289105 Clostridium novyi NT 4540391 YP_877266.1 CDS NT01CX_1183 NC_008593.1 289123 289536 D HtpX family Zn-dependent protease 289123..289536 Clostridium novyi NT 4540640 YP_877267.1 CDS NT01CX_1184 NC_008593.1 289693 291003 D identified by match to protein family HMM PF05569; hypothetical protein 289693..291003 Clostridium novyi NT 4539976 YP_877268.1 CDS NT01CX_1185 NC_008593.1 291082 291570 D malate permease 291082..291570 Clostridium novyi NT 4540319 YP_877269.1 CDS NT01CX_1186 NC_008593.1 291917 293863 D hypothetical protein 291917..293863 Clostridium novyi NT 4541256 YP_877270.1 CDS NT01CX_1187 NC_008593.1 293879 294718 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 293879..294718 Clostridium novyi NT 4539609 YP_877271.1 CDS NT01CX_1188 NC_008593.1 294723 295367 D ABC transporter permease 294723..295367 Clostridium novyi NT 4539850 YP_877272.1 CDS NT01CX_1189 NC_008593.1 295521 295643 D DNA-binding response regulator/sensor histidine kinase 295521..295643 Clostridium novyi NT 4540367 YP_877273.1 CDS NT01CX_1190 NC_008593.1 295664 295768 D sensor protein resE 295664..295768 Clostridium novyi NT 4541781 YP_877274.1 CDS NT01CX_1191 NC_008593.1 295890 296585 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 295890..296585 Clostridium novyi NT 4541904 YP_877275.1 CDS NT01CX_1192 NC_008593.1 296589 298142 D hypothetical protein 296589..298142 Clostridium novyi NT 4540041 YP_877276.1 CDS NT01CX_1193 NC_008593.1 298195 298635 D identified by match to protein family HMM PF00583; spermine/spermidine acetyltransferase 298195..298635 Clostridium novyi NT 4540166 YP_877277.1 CDS NT01CX_1194 NC_008593.1 298693 299313 R hypothetical protein complement(298693..299313) Clostridium novyi NT 4541849 YP_877278.1 CDS NT01CX_1195 NC_008593.1 299520 301112 R identified by match to protein family HMM PF03415; alpha-clostripain complement(299520..301112) Clostridium novyi NT 4539686 YP_877279.1 CDS NT01CX_1196 NC_008593.1 301439 303163 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 301439..303163 Clostridium novyi NT 4540434 YP_877280.1 CDS NT01CX_1197 NC_008593.1 303364 303675 D hypothetical protein 303364..303675 Clostridium novyi NT 4539954 YP_877281.1 CDS NT01CX_1198 NC_008593.1 303871 304239 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 303871..304239 Clostridium novyi NT 4540578 YP_877282.1 CDS NT01CX_1199 NC_008593.1 304255 306390 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 304255..306390 Clostridium novyi NT 4541830 YP_877283.1 CDS NT01CX_1200 NC_008593.1 306569 307891 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 306569..307891 Clostridium novyi NT 4540658 YP_877284.1 CDS NT01CX_1201 NC_008593.1 307891 308709 D hypothetical protein 307891..308709 Clostridium novyi NT 4541072 YP_877285.1 CDS NT01CX_1202 NC_008593.1 308713 309159 D hypothetical protein 308713..309159 Clostridium novyi NT 4540502 YP_877286.1 CDS NT01CX_1203 NC_008593.1 309241 309618 R hypothetical protein complement(309241..309618) Clostridium novyi NT 4540163 YP_877287.1 CDS NT01CX_1204 NC_008593.1 309684 310874 R identified by match to protein family HMM PF00037; match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha complement(309684..310874) Clostridium novyi NT 4540031 YP_877288.1 CDS NT01CX_1205 NC_008593.1 310887 311681 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(310887..311681) Clostridium novyi NT 4540756 YP_877289.1 CDS NT01CX_1206 NC_008593.1 311690 313258 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding complement(311690..313258) Clostridium novyi NT 4541825 YP_877290.1 CDS NT01CX_1207 NC_008593.1 313475 315136 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory transduction histidine kinase 313475..315136 Clostridium novyi NT 4540503 YP_877291.1 CDS folA NC_008593.1 315165 315677 R identified by match to protein family HMM PF00186; dihydrofolate reductase complement(315165..315677) Clostridium novyi NT 4541060 YP_877292.1 CDS NT01CX_1209 NC_008593.1 315723 316184 R hypothetical protein complement(315723..316184) Clostridium novyi NT 4539711 YP_877293.1 CDS NT01CX_1210 NC_008593.1 316504 317781 D identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine/O-acetylserine sulfhydrylase 316504..317781 Clostridium novyi NT 4540430 YP_877294.1 CDS metA NC_008593.1 317800 318708 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 317800..318708 Clostridium novyi NT 4540657 YP_877295.1 CDS NT01CX_1212 NC_008593.1 318970 320289 R ISBma2, transposase complement(318970..320289) Clostridium novyi NT 4540567 YP_877296.1 CDS NT01CX_1213 NC_008593.1 320872 321198 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 320872..321198 Clostridium novyi NT 4541476 YP_877297.1 CDS NT01CX_1214 NC_008593.1 321200 322567 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 321200..322567 Clostridium novyi NT 4541901 YP_877298.1 CDS NT01CX_1215 NC_008593.1 322638 323510 R identified by match to protein family HMM PF02588; hypothetical protein complement(322638..323510) Clostridium novyi NT 4541378 YP_877299.1 CDS NT01CX_1216 NC_008593.1 323670 325094 D hypothetical protein 323670..325094 Clostridium novyi NT 4540460 YP_877300.1 CDS NT01CX_1217 NC_008593.1 325173 326390 D identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 325173..326390 Clostridium novyi NT 4540666 YP_877301.1 CDS NT01CX_1218 NC_008593.1 326404 327459 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; two-component response regulator 326404..327459 Clostridium novyi NT 4539762 YP_877302.1 CDS NT01CX_1219 NC_008593.1 327685 328842 D identified by match to protein family HMM PF00465; 1,3-propanediol dehydrogenase 327685..328842 Clostridium novyi NT 4541962 YP_877303.1 CDS NT01CX_1220 NC_008593.1 328867 331239 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 328867..331239 Clostridium novyi NT 4541800 YP_877304.1 CDS pflC NC_008593.1 331262 332176 D identified by match to protein family HMM PF00037; match to protein family HMM PF04055; glycerol dehydratase activator 331262..332176 Clostridium novyi NT 4540560 YP_877305.1 CDS NT01CX_1222 NC_008593.1 332305 333003 D hypothetical protein 332305..333003 Clostridium novyi NT 4541674 YP_877306.1 CDS NT01CX_1223 NC_008593.1 333072 333914 D hypothetical protein 333072..333914 Clostridium novyi NT 4540999 YP_877307.1 CDS NT01CX_1224 NC_008593.1 334215 334310 D hypothetical protein 334215..334310 Clostridium novyi NT 4541696 YP_877308.1 CDS NT01CX_1225 NC_008593.1 334734 335291 D identified by match to protein family HMM PF01381; DNA-binding protein 334734..335291 Clostridium novyi NT 4539790 YP_877309.1 CDS NT01CX_1226 NC_008593.1 335330 336373 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding subunit 335330..336373 Clostridium novyi NT 4541641 YP_877310.1 CDS potB NC_008593.1 336376 337197 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 336376..337197 Clostridium novyi NT 4541221 YP_877311.1 CDS potC NC_008593.1 337191 337982 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 2 337191..337982 Clostridium novyi NT 4541090 YP_877312.1 CDS NT01CX_1229 NC_008593.1 337982 339025 D identified by match to protein family HMM PF01547; extracellular solute-binding protein 337982..339025 Clostridium novyi NT 4541931 YP_877313.1 CDS NT01CX_1230 NC_008593.1 339100 340791 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(339100..340791) Clostridium novyi NT 4540982 YP_877314.1 CDS NT01CX_1231 NC_008593.1 340824 341099 R hypothetical protein complement(340824..341099) Clostridium novyi NT 4541951 YP_877315.1 CDS NT01CX_1232 NC_008593.1 341147 342079 R identified by match to protein family HMM PF01244; dipeptidase complement(341147..342079) Clostridium novyi NT 4540268 YP_877316.1 CDS asnC NC_008593.1 342563 343954 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 342563..343954 Clostridium novyi NT 4540039 YP_877317.1 CDS NT01CX_1234 NC_008593.1 344099 344704 D hypothetical protein 344099..344704 Clostridium novyi NT 4540399 YP_877318.1 CDS NT01CX_1235 NC_008593.1 344813 348217 D ATP-dependent deoxyribonuclease subunit B 344813..348217 Clostridium novyi NT 4539887 YP_877319.1 CDS NT01CX_1236 NC_008593.1 348205 351915 D identified by match to protein family HMM PF00580; ATP-dependent nuclease subunit A 348205..351915 Clostridium novyi NT 4540844 YP_877320.1 CDS NT01CX_1237 NC_008593.1 351935 352918 D identified by match to protein family HMM PF01966; HD domain-containing protein 351935..352918 Clostridium novyi NT 4540978 YP_877321.1 CDS NT01CX_1238 NC_008593.1 353393 354379 D identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein 353393..354379 Clostridium novyi NT 4540111 YP_877322.1 CDS NT01CX_1239 NC_008593.1 354428 355498 D identified by match to protein family HMM PF00465; glycerol dehydrogenase 354428..355498 Clostridium novyi NT 4539646 YP_877323.1 CDS NT01CX_1240 NC_008593.1 355564 357297 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289; oligoendopeptidase F 355564..357297 Clostridium novyi NT 4540205 YP_877324.1 CDS NT01CX_1241 NC_008593.1 357382 357984 D identified by match to protein family HMM PF02915; rubrerythrin 357382..357984 Clostridium novyi NT 4541499 YP_877325.1 CDS glgA NC_008593.1 358178 359617 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 358178..359617 Clostridium novyi NT 4540561 YP_877326.1 CDS NT01CX_1243 NC_008593.1 359645 362068 D identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 359645..362068 Clostridium novyi NT 4539651 YP_877327.1 CDS NT01CX_1244 NC_008593.1 362131 362757 R identified by match to protein family HMM PF01476; LysM domain-containing protein complement(362131..362757) Clostridium novyi NT 4541890 YP_877328.1 CDS NT01CX_1245 NC_008593.1 362947 363186 D hypothetical protein 362947..363186 Clostridium novyi NT 4541495 YP_877329.1 CDS NT01CX_1246 NC_008593.1 363296 363487 D identified by match to protein family HMM PF00037; ferredoxin 363296..363487 Clostridium novyi NT 4539710 YP_877330.1 CDS NT01CX_1247 NC_008593.1 363548 364360 R hypothetical protein complement(363548..364360) Clostridium novyi NT 4539671 YP_877331.1 CDS NT01CX_1248 NC_008593.1 364409 365101 R hypothetical protein complement(364409..365101) Clostridium novyi NT 4541917 YP_877332.1 CDS NT01CX_1249 NC_008593.1 365494 366561 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator 365494..366561 Clostridium novyi NT 4539982 YP_877333.1 CDS NT01CX_1250 NC_008593.1 366741 367955 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; DNA repair exonuclease 366741..367955 Clostridium novyi NT 4540972 YP_877334.1 CDS NT01CX_1251 NC_008593.1 367945 371475 D exonuclease 367945..371475 Clostridium novyi NT 4541954 YP_877335.1 CDS NT01CX_1252 NC_008593.1 371603 372937 D identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 371603..372937 Clostridium novyi NT 4540825 YP_877336.1 CDS NT01CX_1253 NC_008593.1 373098 374915 D S-layer protein 373098..374915 Clostridium novyi NT 4540386 YP_877337.1 CDS sdaAA NC_008593.1 374987 375865 R identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(374987..375865) Clostridium novyi NT 4541774 YP_877338.1 CDS sdaAB NC_008593.1 375870 376553 R identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta complement(375870..376553) Clostridium novyi NT 4541486 YP_877339.1 CDS NT01CX_1256 NC_008593.1 376745 377212 D small multi-drug export protein 376745..377212 Clostridium novyi NT 4539883 YP_877340.1 CDS NT01CX_1257 NC_008593.1 377233 378894 D identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; two-component sensor kinase 377233..378894 Clostridium novyi NT 4541514 YP_877341.1 CDS NT01CX_1258 NC_008593.1 378905 379615 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; sensory transduction protein lytT 378905..379615 Clostridium novyi NT 4540834 YP_877342.1 CDS NT01CX_1259 NC_008593.1 379727 381157 D identified by match to protein family HMM PF02554; carbon starvation protein A 379727..381157 Clostridium novyi NT 4541223 YP_877343.1 CDS NT01CX_1260 NC_008593.1 381467 381817 D hypothetical protein 381467..381817 Clostridium novyi NT 4539973 YP_877344.1 CDS acpS NC_008593.1 381944 382360 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 381944..382360 Clostridium novyi NT 4541485 YP_877345.1 CDS NT01CX_1262 NC_008593.1 382320 383825 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; YjeF family protein 382320..383825 Clostridium novyi NT 4540759 YP_877346.1 CDS NT01CX_1263 NC_008593.1 383903 384520 D hypothetical protein 383903..384520 Clostridium novyi NT 4541076 YP_877347.1 CDS alr NC_008593.1 384577 385740 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 384577..385740 Clostridium novyi NT 4540795 YP_877348.1 CDS NT01CX_1265 NC_008593.1 385886 386212 D hypothetical protein 385886..386212 Clostridium novyi NT 4541316 YP_877349.1 CDS NT01CX_1266 NC_008593.1 386139 386519 D identified by match to protein family HMM PF02452; pemK family DNA-binding protein 386139..386519 Clostridium novyi NT 4541863 YP_877350.1 CDS NT01CX_1267 NC_008593.1 386623 387447 D identified by match to protein family HMM PF00456; transketolase 386623..387447 Clostridium novyi NT 4539698 YP_877351.1 CDS NT01CX_1268 NC_008593.1 387447 388388 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 387447..388388 Clostridium novyi NT 4540033 YP_877352.1 CDS NT01CX_1269 NC_008593.1 388521 389384 D identified by match to protein family HMM PF02588; hypothetical protein 388521..389384 Clostridium novyi NT 4541873 YP_877353.1 CDS ftsE NC_008593.1 389481 390167 D identified by match to protein family HMM PF00005; cell division ATP-binding protein ftsE 389481..390167 Clostridium novyi NT 4540059 YP_877354.1 CDS NT01CX_1271 NC_008593.1 390157 391047 D identified by match to protein family HMM PF02687; cell division protein ftsX 390157..391047 Clostridium novyi NT 4539590 YP_877355.1 CDS NT01CX_1272 NC_008593.1 391183 392439 D identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 391183..392439 Clostridium novyi NT 4540562 YP_877356.1 CDS NT01CX_1273 NC_008593.1 392468 393757 D identified by match to protein family HMM PF00595; PDZ domain-containing protein 392468..393757 Clostridium novyi NT 4541796 YP_877357.1 CDS uvrB NC_008593.1 393898 395871 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 393898..395871 Clostridium novyi NT 4541826 YP_877358.1 CDS uvrA NC_008593.1 395929 398751 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 395929..398751 Clostridium novyi NT 4541235 YP_877359.1 CDS NT01CX_1276 NC_008593.1 398831 399259 D identified by match to protein family HMM PF00498; FHA domain-containing protein 398831..399259 Clostridium novyi NT 4540396 YP_877360.1 CDS NT01CX_1277 NC_008593.1 399280 400500 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 399280..400500 Clostridium novyi NT 4540996 YP_877361.1 CDS NT01CX_1278 NC_008593.1 400493 401911 D identified by match to protein family HMM PF00905; penicillin-binding protein 400493..401911 Clostridium novyi NT 4539940 YP_877362.1 CDS NT01CX_1279 NC_008593.1 401901 401993 D hypothetical protein 401901..401993 Clostridium novyi NT 4541244 YP_877363.1 CDS NT01CX_1280 NC_008593.1 401990 402592 D identified by match to protein family HMM PF04307; membrane-bound metal-dependent hydrolase 401990..402592 Clostridium novyi NT 4540342 YP_877364.1 CDS uvrC NC_008593.1 402613 404478 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 402613..404478 Clostridium novyi NT 4539874 YP_877365.1 CDS NT01CX_1282 NC_008593.1 404493 405227 D identified by match to protein family HMM PF02231; match to protein family HMM PF02811; hydrolase 404493..405227 Clostridium novyi NT 4540864 YP_877366.1 CDS murB NC_008593.1 405282 406205 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 405282..406205 Clostridium novyi NT 4541958 YP_877367.1 CDS NT01CX_1284 NC_008593.1 406327 407211 D identified by match to protein family HMM PF03668; hypothetical protein 406327..407211 Clostridium novyi NT 4541690 YP_877368.1 CDS NT01CX_1285 NC_008593.1 407208 408545 D identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 407208..408545 Clostridium novyi NT 4541186 YP_877369.1 CDS NT01CX_1286 NC_008593.1 408552 409505 D identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 408552..409505 Clostridium novyi NT 4541773 YP_877370.1 CDS NT01CX_1287 NC_008593.1 409516 410811 D similar to B. subtilis ytoI; identified by match to protein family HMM PF00571; match to protein family HMM PF07085; hypothetical protein 409516..410811 Clostridium novyi NT 4541798 YP_877371.1 CDS asnA NC_008593.1 411027 412046 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 411027..412046 Clostridium novyi NT 4541821 YP_877372.1 CDS NT01CX_1289 NC_008593.1 412290 412973 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 412290..412973 Clostridium novyi NT 4540813 YP_877373.1 CDS NT01CX_1290 NC_008593.1 412978 414393 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 412978..414393 Clostridium novyi NT 4540051 YP_877374.1 CDS NT01CX_1291 NC_008593.1 414478 415320 D hypothetical protein 414478..415320 Clostridium novyi NT 4541730 YP_877375.1 CDS NT01CX_1292 NC_008593.1 415372 416376 D iron(III) ABC transporter 415372..416376 Clostridium novyi NT 4540757 YP_877376.1 CDS glpT NC_008593.1 416412 417764 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 416412..417764 Clostridium novyi NT 4541520 YP_877377.1 CDS NT01CX_1294 NC_008593.1 417966 418820 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 417966..418820 Clostridium novyi NT 4541973 YP_877378.1 CDS NT01CX_1295 NC_008593.1 418972 421905 D identified by match to protein family HMM PF01752; match to protein family HMM PF04151; collagenase 418972..421905 Clostridium novyi NT 4541489 YP_877379.1 CDS dnaE NC_008593.1 422141 425644 D catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 422141..425644 Clostridium novyi NT 4541372 YP_877380.1 CDS NT01CX_1297 NC_008593.1 425904 426863 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 425904..426863 Clostridium novyi NT 4540197 YP_877381.1 CDS NT01CX_1298 NC_008593.1 426911 428332 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 426911..428332 Clostridium novyi NT 4540369 YP_877382.1 CDS rumA NC_008593.1 428564 429982 D identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 428564..429982 Clostridium novyi NT 4539660 YP_877383.1 CDS NT01CX_1300 NC_008593.1 430048 433623 D DNA modification methylase 430048..433623 Clostridium novyi NT 4541474 YP_877384.1 CDS NT01CX_1301 NC_008593.1 433635 436760 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; Snf2/Rad54 family helicase 433635..436760 Clostridium novyi NT 4539989 YP_877385.1 CDS NT01CX_1302 NC_008593.1 437118 437990 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 437118..437990 Clostridium novyi NT 4541650 YP_877386.1 CDS NT01CX_1303 NC_008593.1 437980 439200 D hypothetical protein 437980..439200 Clostridium novyi NT 4539763 YP_877387.1 CDS NT01CX_1304 NC_008593.1 439238 440449 D hypothetical protein 439238..440449 Clostridium novyi NT 4540146 YP_877388.1 CDS NT01CX_1305 NC_008593.1 440549 441787 D lipoprotein 440549..441787 Clostridium novyi NT 4541819 YP_877389.1 CDS NT01CX_1306 NC_008593.1 441828 442394 D identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor 441828..442394 Clostridium novyi NT 4540154 YP_877390.1 CDS NT01CX_1307 NC_008593.1 442366 443127 D hypothetical protein 442366..443127 Clostridium novyi NT 4540429 YP_877391.1 CDS NT01CX_1308 NC_008593.1 443139 444020 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 443139..444020 Clostridium novyi NT 4541893 YP_877392.1 CDS NT01CX_1309 NC_008593.1 444024 445262 D hypothetical protein 444024..445262 Clostridium novyi NT 4540797 YP_877393.1 CDS NT01CX_1310 NC_008593.1 445495 446436 D identified by match to protein family HMM PF00005; multidrug ABC transporter ATPase 445495..446436 Clostridium novyi NT 4541368 YP_877394.1 CDS NT01CX_1311 NC_008593.1 446446 447582 D identified by match to protein family HMM PF01061; permease 446446..447582 Clostridium novyi NT 4541919 YP_877395.1 CDS NT01CX_1312 NC_008593.1 447584 448690 D identified by match to protein family HMM PF01061; ABC transporter permease 447584..448690 Clostridium novyi NT 4539656 YP_877396.1 CDS NT01CX_1313 NC_008593.1 448708 449802 D identified by match to protein family HMM PF02518; histidine kinase-like ATPase 448708..449802 Clostridium novyi NT 4541229 YP_877397.1 CDS NT01CX_1314 NC_008593.1 449774 450403 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator 449774..450403 Clostridium novyi NT 4540631 YP_877398.1 CDS brnQ NC_008593.1 451039 452394 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 451039..452394 Clostridium novyi NT 4539882 YP_877399.1 CDS aroD NC_008593.1 452510 453271 D identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase 452510..453271 Clostridium novyi NT 4541218 YP_877400.1 CDS NT01CX_1317 NC_008593.1 453351 454691 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter complement(453351..454691) Clostridium novyi NT 4540646 YP_877401.1 CDS NT01CX_1318 NC_008593.1 454856 455875 R ABC transporter substrate-binding protein complement(454856..455875) Clostridium novyi NT 4541533 YP_877402.1 CDS NT01CX_1319 NC_008593.1 455856 456638 R hypothetical protein complement(455856..456638) Clostridium novyi NT 4539612 YP_877403.1 CDS NT01CX_1320 NC_008593.1 456666 458039 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase complement(456666..458039) Clostridium novyi NT 4539789 YP_877404.1 CDS NT01CX_1321 NC_008593.1 458029 458712 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator complement(458029..458712) Clostridium novyi NT 4539934 YP_877405.1 CDS NT01CX_1322 NC_008593.1 458920 459426 D identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 458920..459426 Clostridium novyi NT 4540820 YP_877406.1 CDS NT01CX_1323 NC_008593.1 459419 460888 D identified by match to protein family HMM PF03703; membrane flanked domain-containing protein 459419..460888 Clostridium novyi NT 4541909 YP_877407.1 CDS NT01CX_1324 NC_008593.1 460914 461618 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 460914..461618 Clostridium novyi NT 4541473 YP_877408.1 CDS NT01CX_1325 NC_008593.1 461615 463072 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 461615..463072 Clostridium novyi NT 4539983 YP_877409.1 CDS NT01CX_1326 NC_008593.1 463088 464203 D hypothetical protein 463088..464203 Clostridium novyi NT 4541484 YP_877410.1 CDS NT01CX_1327 NC_008593.1 464594 466330 D identified by match to protein family HMM PF00282; L-2,4-diaminobutyrate decarboxylase 464594..466330 Clostridium novyi NT 4539786 YP_877411.1 CDS NT01CX_1328 NC_008593.1 466505 467311 D similar to yxkH B. subtilis; identified by match to protein family HMM PF01522; xylanase/chitin deacetilase 466505..467311 Clostridium novyi NT 4539696 YP_877412.1 CDS cbiM NC_008593.1 467726 468472 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 467726..468472 Clostridium novyi NT 4541956 YP_877413.1 CDS cbiN NC_008593.1 468474 468794 D periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 468474..468794 Clostridium novyi NT 4540926 YP_877414.1 CDS cbiQ NC_008593.1 468794 469558 D identified by match to protein family HMM PF02361; cobalt transport protein 468794..469558 Clostridium novyi NT 4541252 YP_877415.1 CDS NT01CX_1332 NC_008593.1 469643 470479 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01166; cobalt ABC transporter ATP-binding protein 469643..470479 Clostridium novyi NT 4540283 YP_877416.1 CDS NT01CX_1333 NC_008593.1 470517 471827 R identified by match to protein family HMM PF00209; sodium-dependent amino acid transporter complement(470517..471827) Clostridium novyi NT 4540917 YP_877417.1 CDS NT01CX_1334 NC_008593.1 472093 472857 D identified by match to protein family HMM PF00657; platelet activating factor acetylhydrolase-like protein 472093..472857 Clostridium novyi NT 4540616 YP_877418.1 CDS NT01CX_1335 NC_008593.1 472871 473359 D lipoprotein 472871..473359 Clostridium novyi NT 4539666 YP_877419.1 CDS algI NC_008593.1 473410 474816 D identified by match to protein family HMM PF03062; alginate O-acetylation protein 473410..474816 Clostridium novyi NT 4540442 YP_877420.1 CDS NT01CX_1337 NC_008593.1 474861 475316 R hypothetical protein complement(474861..475316) Clostridium novyi NT 4541841 YP_877421.1 CDS NT01CX_1338 NC_008593.1 475371 475823 R cell wall hydrolase; cortex lytic enzyme complement(475371..475823) Clostridium novyi NT 4541785 YP_877422.1 CDS lepB NC_008593.1 475991 476524 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 475991..476524 Clostridium novyi NT 4541526 YP_877423.1 CDS NT01CX_1340 NC_008593.1 476954 478789 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein ftsH 476954..478789 Clostridium novyi NT 4541885 YP_877424.1 CDS NT01CX_1341 NC_008593.1 478770 480899 D ATP-dependent DNA helicase 478770..480899 Clostridium novyi NT 4540428 YP_877425.1 CDS trpB NC_008593.1 481326 482495 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 481326..482495 Clostridium novyi NT 4540195 YP_877426.1 CDS NT01CX_1343 NC_008593.1 482659 484098 D ISBma2, transposase 482659..484098 Clostridium novyi NT 4541751 YP_877427.1 CDS NT01CX_1344 NC_008593.1 484170 485273 R hypothetical protein complement(484170..485273) Clostridium novyi NT 4541284 YP_877428.1 CDS NT01CX_1345 NC_008593.1 485402 486577 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(485402..486577) Clostridium novyi NT 4541487 YP_877429.1 CDS NT01CX_1346 NC_008593.1 486765 488066 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 486765..488066 Clostridium novyi NT 4541884 YP_877430.1 CDS NT01CX_1347 NC_008593.1 488255 489433 D hypothetical protein 488255..489433 Clostridium novyi NT 4541644 YP_877431.1 CDS NT01CX_1348 NC_008593.1 489562 490230 D hypothetical protein 489562..490230 Clostridium novyi NT 4539795 YP_877432.1 CDS NT01CX_1349 NC_008593.1 490365 491834 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 490365..491834 Clostridium novyi NT 4541834 YP_877433.1 CDS NT01CX_1350 NC_008593.1 491904 492107 D hypothetical protein 491904..492107 Clostridium novyi NT 4540850 YP_877434.1 CDS NT01CX_1351 NC_008593.1 492132 492602 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 492132..492602 Clostridium novyi NT 4540455 YP_877435.1 CDS lysA NC_008593.1 493004 494302 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 493004..494302 Clostridium novyi NT 4540592 YP_877436.1 CDS NT01CX_1353 NC_008593.1 494492 503077 D identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; cyclic beta 1-2 glucan synthetase 494492..503077 Clostridium novyi NT 4539736 YP_877437.1 CDS NT01CX_1354 NC_008593.1 503414 503557 D hypothetical protein 503414..503557 Clostridium novyi NT 4539960 YP_877438.1 CDS trpS NC_008593.1 503689 504693 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 503689..504693 Clostridium novyi NT 4541921 YP_877439.1 CDS NT01CX_1356 NC_008593.1 504821 505660 R hypothetical protein complement(504821..505660) Clostridium novyi NT 4540505 YP_877440.1 CDS NT01CX_1357 NC_008593.1 506020 506907 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(506020..506907) Clostridium novyi NT 4541928 YP_877441.1 CDS NT01CX_1358 NC_008593.1 506935 507747 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(506935..507747) Clostridium novyi NT 4540854 YP_877442.1 CDS prfC NC_008593.1 508011 509600 D identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 508011..509600 Clostridium novyi NT 4541699 YP_877443.1 CDS NT01CX_1360 NC_008593.1 509836 510402 D membrane spanning protein 509836..510402 Clostridium novyi NT 4540580 YP_877444.1 CDS NT01CX_1361 NC_008593.1 510514 511611 D identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254; signal transduction protein 510514..511611 Clostridium novyi NT 4541365 YP_877445.1 CDS NT01CX_1362 NC_008593.1 511767 512840 D identified by match to protein family HMM PF04326; ATPase AAA 511767..512840 Clostridium novyi NT 4541911 YP_877446.1 CDS NT01CX_1363 NC_008593.1 512951 513361 D hypothetical protein 512951..513361 Clostridium novyi NT 4539652 YP_877447.1 CDS tyrS NC_008593.1 513731 514957 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 513731..514957 Clostridium novyi NT 4541043 YP_877448.1 CDS NT01CX_1365 NC_008593.1 515064 516710 D hypothetical protein 515064..516710 Clostridium novyi NT 4540563 YP_877449.1 CDS NT01CX_1366 NC_008593.1 516732 517004 D flagella-associated protein 516732..517004 Clostridium novyi NT 4541802 YP_877450.1 CDS NT01CX_1367 NC_008593.1 517011 517694 D identified by match to protein family HMM PF00149; phoshohydrolase 517011..517694 Clostridium novyi NT 4541200 YP_877451.1 CDS NT01CX_1368 NC_008593.1 517771 518631 R identified by match to protein family HMM PF04460; hypothetical protein complement(517771..518631) Clostridium novyi NT 4540389 YP_877452.1 CDS NT01CX_1369 NC_008593.1 518807 519595 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase family protein 518807..519595 Clostridium novyi NT 4539600 YP_877453.1 CDS NT01CX_1370 NC_008593.1 519696 521135 R ISBma2, transposase complement(519696..521135) Clostridium novyi NT 4541740 YP_877454.1 CDS NT01CX_1371 NC_008593.1 521193 521285 R hypothetical protein complement(521193..521285) Clostridium novyi NT 4540626 YP_877455.1 CDS leuS NC_008593.1 521315 523753 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(521315..523753) Clostridium novyi NT 4541679 YP_877456.1 CDS rpsA NC_008593.1 524220 525383 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 524220..525383 Clostridium novyi NT 4541883 YP_877457.1 CDS NT01CX_1375 NC_008593.1 525621 526130 R hypothetical protein complement(525621..526130) Clostridium novyi NT 4539913 YP_877458.1 CDS NT01CX_1376 NC_008593.1 526147 526746 R identified by match to protein family HMM PF00226; molecular chaperone complement(526147..526746) Clostridium novyi NT 4541765 YP_877459.1 CDS NT01CX_1377 NC_008593.1 526730 527581 R similar to Thermotoga maritima; hypothetical protein complement(526730..527581) Clostridium novyi NT 4541867 YP_877460.1 CDS NT01CX_1378 NC_008593.1 527610 528149 R identified by match to protein family HMM PF01928; adenylate cyclase complement(527610..528149) Clostridium novyi NT 4541002 YP_877461.1 CDS NT01CX_1379 NC_008593.1 528263 529309 D hypothetical protein 528263..529309 Clostridium novyi NT 4540049 YP_877462.1 CDS NT01CX_1380 NC_008593.1 529387 530313 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase complement(529387..530313) Clostridium novyi NT 4541985 YP_877463.1 CDS NT01CX_1381 NC_008593.1 530865 531545 R identified by match to protein family HMM PF04239; hypothetical protein complement(530865..531545) Clostridium novyi NT 4541845 YP_877464.1 CDS NT01CX_1382 NC_008593.1 531670 533328 D identified by match to protein family HMM PF00485; phosphoribulokinase family protein 531670..533328 Clostridium novyi NT 4540977 YP_877465.1 CDS NT01CX_1383 NC_008593.1 533423 533752 D hypothetical protein 533423..533752 Clostridium novyi NT 4539784 YP_877466.1 CDS pssA NC_008593.1 533771 534283 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(533771..534283) Clostridium novyi NT 4540330 YP_877467.1 CDS NT01CX_1385 NC_008593.1 534447 534875 D identified by match to protein family HMM PF00571; hypothetical protein 534447..534875 Clostridium novyi NT 4540188 YP_877468.1 CDS NT01CX_1386 NC_008593.1 535096 535998 D similar to YegS from E. coli; lipid kinase 535096..535998 Clostridium novyi NT 4539647 YP_877469.1 CDS NT01CX_1387 NC_008593.1 536049 536699 D hypothetical protein 536049..536699 Clostridium novyi NT 4541932 YP_877470.1 CDS NT01CX_1388 NC_008593.1 536700 538574 R identified by match to protein family HMM PF04055; hypothetical protein complement(536700..538574) Clostridium novyi NT 4540668 YP_877471.1 CDS NT01CX_1389 NC_008593.1 539088 540350 D identified by match to protein family HMM PF00571; match to protein family HMM PF03448; magnesium transporter 539088..540350 Clostridium novyi NT 4540099 YP_877472.1 CDS NT01CX_1390 NC_008593.1 540482 541207 D identified by match to protein family HMM PF01471; match to protein family HMM PF07486; spore-cortex-lytic enzyme 540482..541207 Clostridium novyi NT 4539634 YP_877473.1 CDS NT01CX_1391 NC_008593.1 541592 542203 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 541592..542203 Clostridium novyi NT 4541039 YP_877474.1 CDS NT01CX_1392 NC_008593.1 542169 543152 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 542169..543152 Clostridium novyi NT 4540453 YP_877475.1 CDS NT01CX_1393 NC_008593.1 543192 543893 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 543192..543893 Clostridium novyi NT 4539611 YP_877476.1 CDS NT01CX_1394 NC_008593.1 543906 544529 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 543906..544529 Clostridium novyi NT 4540793 YP_877477.1 CDS NT01CX_1395 NC_008593.1 544549 546408 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase/response regulator complement(544549..546408) Clostridium novyi NT 4541211 YP_877478.1 CDS NT01CX_1396 NC_008593.1 546588 547628 R identified by match to protein family HMM PF05343; glutamyl aminopeptidase complement(546588..547628) Clostridium novyi NT 4540649 YP_877479.1 CDS NT01CX_1397 NC_008593.1 547750 549126 D identified by match to protein family HMM PF04294; match to protein family HMM PF07501; vancomycin b-type resistance protein vanW 547750..549126 Clostridium novyi NT 4541143 YP_877480.1 CDS NT01CX_1398 NC_008593.1 549350 550174 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; cof family hydrolase 549350..550174 Clostridium novyi NT 4541930 YP_877481.1 CDS NT01CX_1399 NC_008593.1 550241 551251 D identified by match to protein family HMM PF04055; spore photoproduct lyase 550241..551251 Clostridium novyi NT 4541087 YP_877482.1 CDS NT01CX_1400 NC_008593.1 551299 551781 D identified by match to protein family HMM PF00588; RNA methyltransferase 551299..551781 Clostridium novyi NT 4539945 YP_877483.1 CDS NT01CX_1401 NC_008593.1 551794 552627 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 551794..552627 Clostridium novyi NT 4539862 YP_877484.1 CDS rpoN NC_008593.1 552770 554137 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 552770..554137 Clostridium novyi NT 4539724 YP_877485.1 CDS NT01CX_1403 NC_008593.1 554352 555401 D identified by match to protein family HMM PF04198; transcriptional regulator 554352..555401 Clostridium novyi NT 4541320 YP_877486.1 CDS NT01CX_1404 NC_008593.1 555463 556467 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 555463..556467 Clostridium novyi NT 4541881 YP_877487.1 CDS NT01CX_1405 NC_008593.1 556670 556789 D hypothetical protein 556670..556789 Clostridium novyi NT 4540091 YP_877488.1 CDS NT01CX_1406 NC_008593.1 556979 558418 D ISBma2, transposase 556979..558418 Clostridium novyi NT 4540334 YP_877489.1 CDS NT01CX_1407 NC_008593.1 558686 559807 D identified by match to protein family HMM PF02608; lipoprotein 558686..559807 Clostridium novyi NT 4541936 YP_877490.1 CDS NT01CX_1408 NC_008593.1 559922 561487 D identified by match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein 559922..561487 Clostridium novyi NT 4540042 YP_877491.1 CDS NT01CX_1409 NC_008593.1 561495 562571 D identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 561495..562571 Clostridium novyi NT 4540271 YP_877492.1 CDS NT01CX_1410 NC_008593.1 562564 563481 D identified by match to protein family HMM PF02653; ABC transporter permease 562564..563481 Clostridium novyi NT 4539965 YP_877493.1 CDS pgk NC_008593.1 563798 564994 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 563798..564994 Clostridium novyi NT 4541997 YP_877494.1 CDS tpiA NC_008593.1 565115 565867 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 565115..565867 Clostridium novyi NT 4541288 YP_877495.1 CDS gpmI NC_008593.1 565940 567475 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 565940..567475 Clostridium novyi NT 4540650 YP_877496.1 CDS eno NC_008593.1 567589 568890 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 567589..568890 Clostridium novyi NT 4540122 YP_877497.1 CDS secG NC_008593.1 569082 569312 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 569082..569312 Clostridium novyi NT 4540645 YP_877498.1 CDS hppA NC_008593.1 569528 571546 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 569528..571546 Clostridium novyi NT 4539952 YP_877499.1 CDS NT01CX_1417 NC_008593.1 571795 574032 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 571795..574032 Clostridium novyi NT 4540913 YP_877500.1 CDS smpB NC_008593.1 574164 574637 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 574164..574637 Clostridium novyi NT 4541278 YP_877501.1 CDS NT01CX_1420 NC_008593.1 576489 577844 D DNA repair ATPase 576489..577844 Clostridium novyi NT 4541321 YP_877502.1 CDS NT01CX_1421 NC_008593.1 577868 579391 D DNA repair ATPase 577868..579391 Clostridium novyi NT 4539677 YP_877503.1 CDS NT01CX_1422 NC_008593.1 579439 579633 D hypothetical protein 579439..579633 Clostridium novyi NT 4541370 YP_877504.1 CDS NT01CX_1423 NC_008593.1 580801 581445 D identified by match to protein family HMM PF00376; S-adenosylmethionine-dependent methyltransferase 580801..581445 Clostridium novyi NT 4541913 YP_877505.1 CDS NT01CX_1424 NC_008593.1 581627 583270 D 5-methylcytosine-specific restriction enzyme B 581627..583270 Clostridium novyi NT 4540054 YP_877506.1 CDS NT01CX_1425 NC_008593.1 583358 584263 D endonuclease 583358..584263 Clostridium novyi NT 4541315 YP_877507.1 CDS NT01CX_1426 NC_008593.1 584268 585545 D hypothetical protein 584268..585545 Clostridium novyi NT 4540314 YP_877508.1 CDS NT01CX_1427 NC_008593.1 585640 586605 D identified by match to protein family HMM PF01207; transcriptional regulator 585640..586605 Clostridium novyi NT 4540629 YP_877509.1 CDS NT01CX_1428 NC_008593.1 586826 587980 D hypothetical protein 586826..587980 Clostridium novyi NT 4540663 YP_877510.1 CDS NT01CX_1429 NC_008593.1 588126 588830 D identified by match to protein family HMM PF00005; antibiotic transport ATP-binding protein spaF/mutF 588126..588830 Clostridium novyi NT 4539670 YP_877511.1 CDS NT01CX_1430 NC_008593.1 588833 589582 D antibiotic permease spaE/mutE 588833..589582 Clostridium novyi NT 4539846 YP_877512.1 CDS NT01CX_1431 NC_008593.1 589582 590358 D antibiotic transport-associated permease spaG/mutG 589582..590358 Clostridium novyi NT 4539972 YP_877513.1 CDS NT01CX_1432 NC_008593.1 590414 591076 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; subtilin biosynthesis regulatory protein spaR 590414..591076 Clostridium novyi NT 4541642 YP_877514.1 CDS NT01CX_1433 NC_008593.1 591064 592425 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; subtilin biosynthesis sensor protein spaK 591064..592425 Clostridium novyi NT 4540461 YP_877515.1 CDS NT01CX_1434 NC_008593.1 592745 593284 D hypothetical protein 592745..593284 Clostridium novyi NT 4541382 YP_877516.1 CDS NT01CX_1435 NC_008593.1 593482 595476 D hypothetical protein 593482..595476 Clostridium novyi NT 4541942 YP_877517.1 CDS NT01CX_1436 NC_008593.1 595672 595773 D hypothetical protein 595672..595773 Clostridium novyi NT 4541084 YP_877518.1 CDS thiG NC_008593.1 596120 596509 D identified by match to protein family HMM PF05690; thiazole biosynthesis protein ThiG 596120..596509 Clostridium novyi NT 4541066 YP_877519.1 CDS thiH NC_008593.1 596521 597681 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 596521..597681 Clostridium novyi NT 4539891 YP_877520.1 CDS NT01CX_1439 NC_008593.1 597871 599052 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside permease NupC 597871..599052 Clostridium novyi NT 4540815 YP_877521.1 CDS NT01CX_1440 NC_008593.1 599216 599905 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase family protein 599216..599905 Clostridium novyi NT 4539793 YP_877522.1 CDS NT01CX_1441 NC_008593.1 600273 600860 D identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 600273..600860 Clostridium novyi NT 4540576 YP_877523.1 CDS NT01CX_1442 NC_008593.1 601084 601599 D identified by match to protein family HMM PF00583; enzyme-regulator fusion protein 601084..601599 Clostridium novyi NT 4539859 YP_877524.1 CDS NT01CX_1443 NC_008593.1 601744 602193 D identified by match to protein family HMM PF00359; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 601744..602193 Clostridium novyi NT 4540828 YP_877525.1 CDS NT01CX_1444 NC_008593.1 602388 603791 D identified by match to protein family HMM TIGR01167; hypothetical protein 602388..603791 Clostridium novyi NT 4539912 YP_877526.1 CDS NT01CX_1445 NC_008593.1 603796 604509 D identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; NPQTN cell wall surface anchor protein 603796..604509 Clostridium novyi NT 4539642 YP_877527.1 CDS NT01CX_1446 NC_008593.1 604589 605479 D identified by match to protein family HMM PF01497; iron (III) dicitrate-binding periplasmic protein 604589..605479 Clostridium novyi NT 4539767 YP_877528.1 CDS NT01CX_1447 NC_008593.1 605497 606495 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 605497..606495 Clostridium novyi NT 4540279 YP_877529.1 CDS NT01CX_1448 NC_008593.1 606498 607289 D identified by match to protein family HMM PF00005; ferric enterobactin transport ATP-binding protein fepC 606498..607289 Clostridium novyi NT 4540062 YP_877530.1 CDS NT01CX_1449 NC_008593.1 607313 607933 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 607313..607933 Clostridium novyi NT 4539735 YP_877531.1 CDS cydD NC_008593.1 607961 609706 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug resistance protein 1 607961..609706 Clostridium novyi NT 4541054 YP_877532.1 CDS NT01CX_1451 NC_008593.1 609723 611384 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 609723..611384 Clostridium novyi NT 4541960 YP_877533.1 CDS NT01CX_1452 NC_008593.1 611561 611848 D identified by match to protein family HMM PF02302; PTS system transporter subunit IIB 611561..611848 Clostridium novyi NT 4540043 YP_877534.1 CDS NT01CX_1453 NC_008593.1 612035 613759 D identified by match to protein family HMM PF00012; DNAk protein 612035..613759 Clostridium novyi NT 4540233 YP_877535.1 CDS NT01CX_1454 NC_008593.1 613782 614933 D identified by match to protein family HMM PF00515; hypothetical protein 613782..614933 Clostridium novyi NT 4540869 YP_877536.1 CDS NT01CX_1455 NC_008593.1 614967 616343 D identified by match to protein family HMM PF00226; match to protein family HMM PF00515; hypothetical protein 614967..616343 Clostridium novyi NT 4540559 YP_877537.1 CDS asnC NC_008593.1 616718 617200 D identified by match to protein family HMM PF01037; AsnC/Lrp family transcriptional regulator 616718..617200 Clostridium novyi NT 4541206 YP_877538.1 CDS NT01CX_1457 NC_008593.1 617197 618369 D identified by match to protein family HMM PF00155; aspartate aminotransferase 617197..618369 Clostridium novyi NT 4541694 YP_877539.1 CDS NT01CX_1458 NC_008593.1 618547 621267 D identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM TIGR01167; leucine rich repeat domain-containing protein 618547..621267 Clostridium novyi NT 4541132 YP_877540.1 CDS NT01CX_1459 NC_008593.1 621356 626383 D identified by match to protein family HMM PF00560; match to protein family HMM PF05031; match to protein family HMM TIGR01167; hypothetical protein 621356..626383 Clostridium novyi NT 4539682 YP_877541.1 CDS NT01CX_1460 NC_008593.1 626466 627905 R ISBma2, transposase complement(626466..627905) Clostridium novyi NT 4540431 YP_877542.1 CDS NT01CX_1461 NC_008593.1 628245 629015 D identified by match to protein family HMM PF00455; sugar metabolism transcriptional regulator 628245..629015 Clostridium novyi NT 4540807 YP_877543.1 CDS NT01CX_1462 NC_008593.1 629053 630174 D identified by match to protein family HMM PF01041; pleiotropic regulatory protein 629053..630174 Clostridium novyi NT 4541969 YP_877544.1 CDS spsC NC_008593.1 630286 631479 D identified by match to protein family HMM PF01041; spore coat polysaccharide biosynthesis protein spsC 630286..631479 Clostridium novyi NT 4539923 YP_877545.1 CDS NT01CX_1464 NC_008593.1 631661 632911 D hypothetical protein 631661..632911 Clostridium novyi NT 4541988 YP_877546.1 CDS NT01CX_1465 NC_008593.1 633213 633911 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator 633213..633911 Clostridium novyi NT 4541854 YP_877547.1 CDS NT01CX_1466 NC_008593.1 633883 636024 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory transduction protein kinase 633883..636024 Clostridium novyi NT 4541947 YP_877548.1 CDS NT01CX_1467 NC_008593.1 636196 636738 D identified by match to protein family HMM PF02632; hypothetical protein 636196..636738 Clostridium novyi NT 4540761 YP_877549.1 CDS bioD NC_008593.1 636854 637570 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 636854..637570 Clostridium novyi NT 4539917 YP_877550.1 CDS bioA NC_008593.1 637576 638946 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 637576..638946 Clostridium novyi NT 4540611 YP_877551.1 CDS bioB NC_008593.1 638936 639889 D catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 638936..639889 Clostridium novyi NT 4541978 YP_877552.1 CDS NT01CX_1471 NC_008593.1 640120 641229 D identified by match to protein family HMM PF04346; ethanolamine transporter 640120..641229 Clostridium novyi NT 4541228 YP_877553.1 CDS NT01CX_1472 NC_008593.1 641226 643007 D identified by match to protein family HMM PF00557; peptidase, M24 family protein 641226..643007 Clostridium novyi NT 4540116 YP_877554.1 CDS NT01CX_1473 NC_008593.1 643628 645430 D identified by match to protein family HMM PF01289; tetanolysin O 643628..645430 Clostridium novyi NT 4540518 YP_877555.1 CDS NT01CX_1474 NC_008593.1 645486 646619 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(645486..646619) Clostridium novyi NT 4541698 YP_877556.1 CDS NT01CX_1475 NC_008593.1 646758 648188 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase 646758..648188 Clostridium novyi NT 4540855 YP_877557.1 CDS NT01CX_1476 NC_008593.1 648290 649051 D identified by match to protein family HMM PF01614; IclR family transcriptional regulator 648290..649051 Clostridium novyi NT 4541245 YP_877558.1 CDS NT01CX_1477 NC_008593.1 649230 649883 D identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 649230..649883 Clostridium novyi NT 4540200 YP_877559.1 CDS NT01CX_1478 NC_008593.1 649895 650917 D identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase 649895..650917 Clostridium novyi NT 4541792 YP_877560.1 CDS NT01CX_1479 NC_008593.1 651050 651724 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 651050..651724 Clostridium novyi NT 4539639 YP_877561.1 CDS NT01CX_1480 NC_008593.1 651984 653702 D identified by match to protein family HMM PF00920; dihydroxyacid dehydratase 651984..653702 Clostridium novyi NT 4539675 YP_877562.1 CDS NT01CX_1481 NC_008593.1 653831 655201 D identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate permease 653831..655201 Clostridium novyi NT 4541647 YP_877563.1 CDS nagB NC_008593.1 655331 656056 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(655331..656056) Clostridium novyi NT 4541281 YP_877564.1 CDS NT01CX_1483 NC_008593.1 656516 656767 D similar to Thermotoga maritima; hypothetical protein 656516..656767 Clostridium novyi NT 4540053 YP_877565.1 CDS NT01CX_1484 NC_008593.1 656771 657817 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 656771..657817 Clostridium novyi NT 4539981 YP_877566.1 CDS thiH NC_008593.1 657819 659195 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 657819..659195 Clostridium novyi NT 4540313 YP_877567.1 CDS NT01CX_1486 NC_008593.1 659212 660402 D identified by match to protein family HMM TIGR00231; GTP-binding protein 659212..660402 Clostridium novyi NT 4540388 YP_877568.1 CDS NT01CX_1487 NC_008593.1 660579 660932 D identified by match to protein family HMM PF02579; hypothetical protein 660579..660932 Clostridium novyi NT 4542001 YP_877569.1 CDS NT01CX_1488 NC_008593.1 660941 661798 D identified by match to protein family HMM PF00037; ferredoxin 660941..661798 Clostridium novyi NT 4541711 YP_877570.1 CDS NT01CX_1489 NC_008593.1 661786 662643 D identified by match to protein family HMM PF00037; match to protein family HMM PF01656; MinD family protein 661786..662643 Clostridium novyi NT 4540459 YP_877571.1 CDS NT01CX_1490 NC_008593.1 662876 663232 D identified by match to protein family HMM PF02579; hypothetical protein 662876..663232 Clostridium novyi NT 4541082 YP_877572.1 CDS NT01CX_1491 NC_008593.1 663256 663699 D identified by match to protein family HMM PF02001; HTH DNA-binding protein 663256..663699 Clostridium novyi NT 4539878 YP_877573.1 CDS NT01CX_1492 NC_008593.1 663830 664687 R identified by match to protein family HMM PF01522; chitooligosaccharide deacetylase complement(663830..664687) Clostridium novyi NT 4539988 YP_877574.1 CDS NT01CX_1493 NC_008593.1 664806 666245 R ISBma2, transposase complement(664806..666245) Clostridium novyi NT 4539875 YP_877575.1 CDS NT01CX_1494 NC_008593.1 666412 667236 R identified by match to protein family HMM PF01476; LysM repeat-containing protein complement(666412..667236) Clostridium novyi NT 4540587 YP_877576.1 CDS NT01CX_1495 NC_008593.1 667678 668691 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional regulator 667678..668691 Clostridium novyi NT 4541184 YP_877577.1 CDS deoC NC_008593.1 668789 669457 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 668789..669457 Clostridium novyi NT 4539848 YP_877578.1 CDS deoB NC_008593.1 669597 670769 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 669597..670769 Clostridium novyi NT 4541317 YP_877579.1 CDS NT01CX_1498 NC_008593.1 670859 671677 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 670859..671677 Clostridium novyi NT 4541516 YP_877580.1 CDS NT01CX_1499 NC_008593.1 671741 673066 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; pyrimidine-nucleoside phosphorylase 671741..673066 Clostridium novyi NT 4541750 YP_877581.1 CDS NT01CX_1500 NC_008593.1 673239 674453 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; nucleoside permease 673239..674453 Clostridium novyi NT 4541216 YP_877582.1 CDS NT01CX_1501 NC_008593.1 674667 675623 D similar to YceG B. subtilis; hypothetical protein 674667..675623 Clostridium novyi NT 4540126 YP_877583.1 CDS thiS NC_008593.1 675669 675863 D identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 675669..675863 Clostridium novyi NT 4541756 YP_877584.1 CDS thiF NC_008593.1 675866 676504 D catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 675866..676504 Clostridium novyi NT 4541369 YP_877585.1 CDS NT01CX_1504 NC_008593.1 676524 677147 D identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 676524..677147 Clostridium novyi NT 4540424 YP_877586.1 CDS NT01CX_1505 NC_008593.1 677310 678062 R identified by match to protein family HMM PF01522; xylanase/chitin deacetylase complement(677310..678062) Clostridium novyi NT 4539712 YP_877587.1 CDS NT01CX_1506 NC_008593.1 678108 679307 R hypothetical protein complement(678108..679307) Clostridium novyi NT 4539709 YP_877588.1 CDS NT01CX_1507 NC_008593.1 679478 680809 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; Na+-driven multidrug efflux pump 679478..680809 Clostridium novyi NT 4540223 YP_877589.1 CDS NT01CX_1508 NC_008593.1 680890 683499 D identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; lysyl transferase 680890..683499 Clostridium novyi NT 4539681 YP_877590.1 CDS NT01CX_1509 NC_008593.1 683598 684866 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; integral membrane protein 683598..684866 Clostridium novyi NT 4540228 YP_877591.1 CDS NT01CX_1510 NC_008593.1 685034 686251 D identified by match to protein family HMM PF00704; match to protein family HMM PF01476; spore peptidogylcan hydrolase 685034..686251 Clostridium novyi NT 4540584 YP_877592.1 CDS NT01CX_1511 NC_008593.1 686421 688391 D hypothetical protein 686421..688391 Clostridium novyi NT 4540385 YP_877593.1 CDS NT01CX_1512 NC_008593.1 688456 690453 R identified by match to protein family HMM PF06874; fructose-1,6-bisphosphatase complement(688456..690453) Clostridium novyi NT 4540860 YP_877594.1 CDS NT01CX_1513 NC_008593.1 690701 691369 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 690701..691369 Clostridium novyi NT 4541283 YP_877595.1 CDS NT01CX_1514 NC_008593.1 691373 692893 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 691373..692893 Clostridium novyi NT 4540512 YP_877596.1 CDS NT01CX_1515 NC_008593.1 692970 694106 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; HtrA-like serine protease complement(692970..694106) Clostridium novyi NT 4540612 YP_877597.1 CDS NT01CX_1516 NC_008593.1 694192 695007 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN complement(694192..695007) Clostridium novyi NT 4539714 YP_877598.1 CDS NT01CX_1517 NC_008593.1 695719 696870 D hypothetical protein 695719..696870 Clostridium novyi NT 4540432 YP_877599.1 CDS NT01CX_1518 NC_008593.1 696939 700226 D hypothetical protein 696939..700226 Clostridium novyi NT 4541716 YP_877600.1 CDS NT01CX_1519 NC_008593.1 700586 701746 D identified by match to protein family HMM PF02687; lipoprotein releasing system transmembrane protein 700586..701746 Clostridium novyi NT 4541999 YP_877601.1 CDS NT01CX_1520 NC_008593.1 701739 702416 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 701739..702416 Clostridium novyi NT 4541948 YP_877602.1 CDS NT01CX_1521 NC_008593.1 702453 703181 D cell wall hydrolase 702453..703181 Clostridium novyi NT 4541982 YP_877603.1 CDS NT01CX_1522 NC_008593.1 703467 704156 D identified by match to protein family HMM PF02706; Cps19aC 703467..704156 Clostridium novyi NT 4540207 YP_877604.1 CDS NT01CX_1523 NC_008593.1 704173 704877 D identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap1B 704173..704877 Clostridium novyi NT 4541239 YP_877605.1 CDS NT01CX_1524 NC_008593.1 704874 705644 D CpsB protein 704874..705644 Clostridium novyi NT 4540995 YP_877606.1 CDS NT01CX_1525 NC_008593.1 705738 706397 D identified by match to protein family HMM PF02397; capsular polysaccharide biosynthsis protein 705738..706397 Clostridium novyi NT 4541755 YP_877607.1 CDS NT01CX_1526 NC_008593.1 706410 707567 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 706410..707567 Clostridium novyi NT 4541768 YP_877608.1 CDS NT01CX_1527 NC_008593.1 707594 708970 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; capsular polysaccharide biosynthesis protein Cap5O 707594..708970 Clostridium novyi NT 4541872 YP_877609.1 CDS NT01CX_1528 NC_008593.1 708983 710080 D identified by match to protein family HMM PF00534; glycoside hydrolase 708983..710080 Clostridium novyi NT 4541482 YP_877610.1 CDS NT01CX_1529 NC_008593.1 710157 711281 D hypothetical protein 710157..711281 Clostridium novyi NT 4539990 YP_877611.1 CDS NT01CX_1530 NC_008593.1 711298 712428 D glycosyltransferase 711298..712428 Clostridium novyi NT 4541638 YP_877612.1 CDS NT01CX_1531 NC_008593.1 712443 713795 D hypothetical protein 712443..713795 Clostridium novyi NT 4539667 YP_877613.1 CDS NT01CX_1532 NC_008593.1 713792 715165 D capsular polysaccharide biosynthesis protein 713792..715165 Clostridium novyi NT 4539722 YP_877614.1 CDS NT01CX_1533 NC_008593.1 715224 716297 D capsule biosynthesis protein capA 715224..716297 Clostridium novyi NT 4541836 YP_877615.1 CDS NT01CX_1534 NC_008593.1 716281 717510 D identified by match to protein family HMM PF01943; RfbX family O-antigen/teichoic acid exporter membrane protein 716281..717510 Clostridium novyi NT 4540643 YP_877616.1 CDS NT01CX_1535 NC_008593.1 717520 719694 D hypothetical protein 717520..719694 Clostridium novyi NT 4540323 YP_877617.1 CDS galE NC_008593.1 719740 720711 D identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 719740..720711 Clostridium novyi NT 4540451 YP_877618.1 CDS NT01CX_1537 NC_008593.1 720726 721172 D identified by match to protein family HMM PF04892; phosphotransbutyrylase 720726..721172 Clostridium novyi NT 4540865 YP_877619.1 CDS NT01CX_1538 NC_008593.1 721379 722302 D hypothetical protein 721379..722302 Clostridium novyi NT 4541891 YP_877620.1 CDS NT01CX_1539 NC_008593.1 722464 723903 D ISBma2, transposase 722464..723903 Clostridium novyi NT 4541708 YP_877621.1 CDS galU NC_008593.1 723973 724854 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(723973..724854) Clostridium novyi NT 4541324 YP_877622.1 CDS NT01CX_1541 NC_008593.1 725128 727734 D identified by match to protein family HMM PF01841; transglutaminase 725128..727734 Clostridium novyi NT 4541049 YP_877623.1 CDS NT01CX_1542 NC_008593.1 727868 729040 R identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(727868..729040) Clostridium novyi NT 4539707 YP_877624.1 CDS NT01CX_1543 NC_008593.1 729320 731599 D hypothetical protein 729320..731599 Clostridium novyi NT 4541677 YP_877625.1 CDS NT01CX_1544 NC_008593.1 731805 732992 D identified by match to protein family HMM PF01841; transglutaminase 731805..732992 Clostridium novyi NT 4541492 YP_877626.1 CDS NT01CX_1545 NC_008593.1 733157 733705 D identified by match to protein family HMM PF04542; sigma-70 region 2 domain-containing protein 733157..733705 Clostridium novyi NT 4540204 YP_877627.1 CDS NT01CX_1546 NC_008593.1 733784 734182 D lipoprotein 733784..734182 Clostridium novyi NT 4541797 YP_877628.1 CDS NT01CX_1547 NC_008593.1 734218 734877 R identified by match to protein family HMM PF00440; AcrR family transcriptional regulator complement(734218..734877) Clostridium novyi NT 4540393 YP_877629.1 CDS NT01CX_1548 NC_008593.1 735074 736537 D identified by match to protein family HMM TIGR01730; HlyD family secretion protein 735074..736537 Clostridium novyi NT 4539892 YP_877630.1 CDS NT01CX_1549 NC_008593.1 736551 737126 D AcrB/AcrD/AcrF family protein 736551..737126 Clostridium novyi NT 4541704 YP_877631.1 CDS NT01CX_1550 NC_008593.1 737114 739669 D RND efflux transporter 737114..739669 Clostridium novyi NT 4539597 YP_877632.1 CDS NT01CX_1551 NC_008593.1 739675 741321 D hypothetical protein 739675..741321 Clostridium novyi NT 4540808 YP_877633.1 CDS NT01CX_1552 NC_008593.1 741321 742448 D hypothetical protein 741321..742448 Clostridium novyi NT 4541835 YP_877634.1 CDS NT01CX_1553 NC_008593.1 742610 743557 D AcrA/AcrE family protein 742610..743557 Clostridium novyi NT 4540582 YP_877635.1 CDS algI NC_008593.1 743623 745080 D identified by match to protein family HMM PF03062; alginate O-acetylation protein 743623..745080 Clostridium novyi NT 4539927 YP_877636.1 CDS NT01CX_1555 NC_008593.1 745096 746148 D hypothetical protein 745096..746148 Clostridium novyi NT 4539941 YP_877637.1 CDS NT01CX_1556 NC_008593.1 746258 750718 D hypothetical protein 746258..750718 Clostridium novyi NT 4539621 YP_877638.1 CDS NT01CX_1557 NC_008593.1 750902 751732 D hypothetical protein 750902..751732 Clostridium novyi NT 4539849 YP_877639.1 CDS NT01CX_1558 NC_008593.1 751747 752388 D hypothetical protein 751747..752388 Clostridium novyi NT 4541544 YP_877640.1 CDS NT01CX_1559 NC_008593.1 752415 752897 D hypothetical protein 752415..752897 Clostridium novyi NT 4539778 YP_877641.1 CDS NT01CX_1560 NC_008593.1 753030 753587 D identified by match to protein family HMM PF02659; integral membrane protein 753030..753587 Clostridium novyi NT 4540744 YP_877642.1 CDS NT01CX_1561 NC_008593.1 753656 753997 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family 753656..753997 Clostridium novyi NT 4541705 YP_877643.1 CDS NT01CX_1562 NC_008593.1 754148 754570 D identified by match to protein family HMM PF01475; ferric uptake regulation protein 754148..754570 Clostridium novyi NT 4539614 YP_877644.1 CDS NT01CX_1563 NC_008593.1 754633 755010 D hypothetical protein 754633..755010 Clostridium novyi NT 4540212 YP_877645.1 CDS pepF NC_008593.1 755036 756823 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 755036..756823 Clostridium novyi NT 4539636 YP_877646.1 CDS NT01CX_1565 NC_008593.1 756960 758018 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; hypothetical protein 756960..758018 Clostridium novyi NT 4539860 YP_877647.1 CDS NT01CX_1566 NC_008593.1 758104 758712 D identified by match to protein family HMM PF01694; rhomboid family membrane protein 758104..758712 Clostridium novyi NT 4539727 YP_877648.1 CDS NT01CX_1567 NC_008593.1 758722 759420 D hypothetical protein 758722..759420 Clostridium novyi NT 4540511 YP_877649.1 CDS NT01CX_1568 NC_008593.1 759555 761270 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent zinc metallopeptidase complement(759555..761270) Clostridium novyi NT 4541994 YP_877650.1 CDS NT01CX_1569 NC_008593.1 761539 762519 D hypothetical protein 761539..762519 Clostridium novyi NT 4540112 YP_877651.1 CDS NT01CX_1570 NC_008593.1 762646 763350 D ribonuclease HI 762646..763350 Clostridium novyi NT 4541328 YP_877652.1 CDS NT01CX_1571 NC_008593.1 763405 763578 D hypothetical protein 763405..763578 Clostridium novyi NT 4541865 YP_877653.1 CDS NT01CX_1572 NC_008593.1 763817 765061 D identified by match to protein family HMM PF00515; XRE family transcriptional regulator 763817..765061 Clostridium novyi NT 4541759 YP_877654.1 CDS NT01CX_1573 NC_008593.1 765085 766338 D ferrous iron transport protein B-like protein 765085..766338 Clostridium novyi NT 4539654 YP_877655.1 CDS NT01CX_1574 NC_008593.1 766467 767189 R identified by match to protein family HMM PF07685; cobyric acid synthase complement(766467..767189) Clostridium novyi NT 4539921 YP_877656.1 CDS NT01CX_1575 NC_008593.1 767199 768605 R identified by match to protein family HMM PF01225; Mur ligase family protein complement(767199..768605) Clostridium novyi NT 4540210 YP_877657.1 CDS NT01CX_1576 NC_008593.1 768967 769728 D COG1434 family; identified by match to protein family HMM PF02698; hypothetical protein 768967..769728 Clostridium novyi NT 4540326 YP_877658.1 CDS NT01CX_1577 NC_008593.1 769802 771241 R ISBma2, transposase complement(769802..771241) Clostridium novyi NT 4539730 YP_877659.1 CDS NT01CX_1578 NC_008593.1 771458 772306 R YitT family COG1284 subfamily; identified by match to protein family HMM PF02588; hypothetical protein complement(771458..772306) Clostridium novyi NT 4539861 YP_877660.1 CDS NT01CX_1579 NC_008593.1 773073 774392 D identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; rnfC/nqrF 773073..774392 Clostridium novyi NT 4540921 YP_877661.1 CDS NT01CX_1580 NC_008593.1 774409 775362 D identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; NADH:ubiquinone oxidoreductase, Na translocating, B subunit 774409..775362 Clostridium novyi NT 4541720 YP_877662.1 CDS NT01CX_1581 NC_008593.1 775363 775986 D identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947; rnfG/nqrC 775363..775986 Clostridium novyi NT 4540750 YP_877663.1 CDS NT01CX_1582 NC_008593.1 775986 776585 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 775986..776585 Clostridium novyi NT 4539963 YP_877664.1 CDS NT01CX_1583 NC_008593.1 776615 777190 D identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; rnfA/nqrE 776615..777190 Clostridium novyi NT 4541806 YP_877665.1 CDS NT01CX_1584 NC_008593.1 777204 778088 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 777204..778088 Clostridium novyi NT 4541367 YP_877666.1 CDS NT01CX_1585 NC_008593.1 778209 778973 R hypothetical protein complement(778209..778973) Clostridium novyi NT 4539938 YP_877667.1 CDS mgtE NC_008593.1 779458 780792 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 779458..780792 Clostridium novyi NT 4540152 YP_877668.1 CDS argS NC_008593.1 781172 782863 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 781172..782863 Clostridium novyi NT 4540968 YP_877669.1 CDS manA NC_008593.1 783152 784132 D identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 783152..784132 Clostridium novyi NT 4540213 YP_877670.1 CDS NT01CX_1589 NC_008593.1 784292 785089 D hypothetical protein 784292..785089 Clostridium novyi NT 4539624 YP_877671.1 CDS NT01CX_1590 NC_008593.1 785182 785343 R hypothetical protein complement(785182..785343) Clostridium novyi NT 4541279 YP_877672.1 CDS feoB NC_008593.1 785379 787154 R identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B complement(785379..787154) Clostridium novyi NT 4541146 YP_877673.1 CDS feoA NC_008593.1 787156 787425 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(787156..787425) Clostridium novyi NT 4540063 YP_877674.1 CDS NT01CX_1593 NC_008593.1 787594 788256 D hypothetical protein 787594..788256 Clostridium novyi NT 4540589 YP_877675.1 CDS NT01CX_1594 NC_008593.1 788538 790226 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV fimbrial assembly protein PilB 788538..790226 Clostridium novyi NT 4541222 YP_877676.1 CDS NT01CX_1595 NC_008593.1 790255 791463 D identified by match to protein family HMM PF00482; pilin biogenesis protein 790255..791463 Clostridium novyi NT 4541129 YP_877677.1 CDS NT01CX_1596 NC_008593.1 791674 792150 D identified by match to protein family HMM PF00114; pilin family protein 791674..792150 Clostridium novyi NT 4540040 YP_877678.1 CDS NT01CX_1597 NC_008593.1 792218 792793 D identified by match to protein family HMM PF05137; fimbrial assembly protein (PilN) family protein 792218..792793 Clostridium novyi NT 4540156 YP_877679.1 CDS NT01CX_1598 NC_008593.1 792783 794078 D hypothetical protein 792783..794078 Clostridium novyi NT 4540035 YP_877680.1 CDS NT01CX_1599 NC_008593.1 794091 794786 D hypothetical protein 794091..794786 Clostridium novyi NT 4540117 YP_877681.1 CDS NT01CX_1600 NC_008593.1 794799 797039 D hypothetical protein 794799..797039 Clostridium novyi NT 4541929 YP_877682.1 CDS NT01CX_1601 NC_008593.1 797059 797535 D hypothetical protein 797059..797535 Clostridium novyi NT 4540438 YP_877683.1 CDS NT01CX_1602 NC_008593.1 797532 798272 D identified by match to protein family HMM PF01478; match to protein family HMM PF06750; prepilin peptidase, type IV 797532..798272 Clostridium novyi NT 4540803 YP_877684.1 CDS NT01CX_1603 NC_008593.1 798315 799373 D identified by match to protein family HMM TIGR01175; fimbrial assembly protein 798315..799373 Clostridium novyi NT 4540622 YP_877685.1 CDS NT01CX_1604 NC_008593.1 799394 803152 D hypothetical protein 799394..803152 Clostridium novyi NT 4541011 YP_877686.1 CDS NT01CX_1605 NC_008593.1 803298 805424 D identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 803298..805424 Clostridium novyi NT 4539658 YP_877687.1 CDS NT01CX_1606 NC_008593.1 805495 807153 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease complement(805495..807153) Clostridium novyi NT 4541895 YP_877688.1 CDS NT01CX_1607 NC_008593.1 807295 807825 R identified by match to protein family HMM PF00440; transcriptional regulator complement(807295..807825) Clostridium novyi NT 4541791 YP_877689.1 CDS NT01CX_1608 NC_008593.1 808007 808693 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 808007..808693 Clostridium novyi NT 4540390 YP_877690.1 CDS NT01CX_1609 NC_008593.1 808982 810505 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 808982..810505 Clostridium novyi NT 4541224 YP_877691.1 CDS NT01CX_1610 NC_008593.1 810589 811377 D identified by match to protein family HMM PF01012; electron-transferring flavoprotein small chain 810589..811377 Clostridium novyi NT 4541036 YP_877692.1 CDS NT01CX_1611 NC_008593.1 811452 812672 D identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha 811452..812672 Clostridium novyi NT 4541916 YP_877693.1 CDS NT01CX_1612 NC_008593.1 812718 814118 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 812718..814118 Clostridium novyi NT 4539613 YP_877694.1 CDS NT01CX_1613 NC_008593.1 814273 816738 D hypothetical protein 814273..816738 Clostridium novyi NT 4541209 YP_877695.1 CDS gltX NC_008593.1 816806 818269 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(816806..818269) Clostridium novyi NT 4541986 YP_877696.1 CDS NT01CX_1615 NC_008593.1 818511 819191 D identified by match to protein family HMM PF01569; PAP2 family protein 818511..819191 Clostridium novyi NT 4540975 YP_877697.1 CDS NT01CX_1616 NC_008593.1 819330 820022 D hypothetical protein 819330..820022 Clostridium novyi NT 4539623 YP_877698.1 CDS NT01CX_1617 NC_008593.1 819994 820911 R identified by match to protein family HMM PF01471; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(819994..820911) Clostridium novyi NT 4539607 YP_877699.1 CDS NT01CX_1618 NC_008593.1 821034 822227 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 821034..822227 Clostridium novyi NT 4539880 YP_877700.1 CDS NT01CX_1619 NC_008593.1 822228 822860 R hypothetical protein complement(822228..822860) Clostridium novyi NT 4540914 YP_877701.1 CDS NT01CX_1620 NC_008593.1 823010 824122 D identified by match to protein family HMM PF02073; aminopeptidase 823010..824122 Clostridium novyi NT 4539933 YP_877702.1 CDS NT01CX_1621 NC_008593.1 824156 825487 R identified by match to protein family HMM PF00768; match to protein family HMM PF00905; D-alanyl-D-alanine carboxypeptidase complement(824156..825487) Clostridium novyi NT 4541319 YP_877703.1 CDS NT01CX_1622 NC_008593.1 825625 826227 D identified by match to protein family HMM PF00293; phosphohydrolase (mutT family protein) 825625..826227 Clostridium novyi NT 4541008 YP_877704.1 CDS NT01CX_1623 NC_008593.1 826350 826991 D similar to Thermotoga; hypothetical protein 826350..826991 Clostridium novyi NT 4539716 YP_877705.1 CDS NT01CX_1624 NC_008593.1 827012 827311 D hypothetical protein 827012..827311 Clostridium novyi NT 4540364 YP_877706.1 CDS NT01CX_1625 NC_008593.1 827382 827615 D hypothetical protein 827382..827615 Clostridium novyi NT 4541215 YP_877707.1 CDS NT01CX_1626 NC_008593.1 827683 829158 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(827683..829158) Clostridium novyi NT 4540274 YP_877708.1 CDS NT01CX_1627 NC_008593.1 829402 831585 D identified by match to protein family HMM PF00580; superfamily I DNA helicase 829402..831585 Clostridium novyi NT 4541379 YP_877709.1 CDS NT01CX_1628 NC_008593.1 831754 832047 D hypothetical protein 831754..832047 Clostridium novyi NT 4539737 YP_877710.1 CDS NT01CX_1629 NC_008593.1 832166 834283 D cell division protein ftsA 832166..834283 Clostridium novyi NT 4540096 YP_877711.1 CDS NT01CX_1630 NC_008593.1 834302 835474 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; IAA-like amino acid hydrolase 834302..835474 Clostridium novyi NT 4540847 YP_877712.1 CDS NT01CX_1631 NC_008593.1 835638 836609 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C 835638..836609 Clostridium novyi NT 4540652 YP_877713.1 CDS NT01CX_1632 NC_008593.1 836622 838235 D identified by match to protein family HMM PF01943; stage V sporulation protein B 836622..838235 Clostridium novyi NT 4541737 YP_877714.1 CDS NT01CX_1633 NC_008593.1 838312 839826 R identified by match to protein family HMM PF01943; stage V sporulation protein B complement(838312..839826) Clostridium novyi NT 4539697 YP_877715.1 CDS NT01CX_1634 NC_008593.1 840000 840464 D hypothetical protein 840000..840464 Clostridium novyi NT 4540219 YP_877716.1 CDS NT01CX_1635 NC_008593.1 840486 841214 D hypothetical protein 840486..841214 Clostridium novyi NT 4540861 YP_877717.1 CDS NT01CX_1636 NC_008593.1 841291 842523 R identified by match to protein family HMM PF00375; proton/glutamate symporter complement(841291..842523) Clostridium novyi NT 4541955 YP_877718.1 CDS NT01CX_1637 NC_008593.1 842740 844071 D hypothetical protein 842740..844071 Clostridium novyi NT 4539650 YP_877719.1 CDS NT01CX_1638 NC_008593.1 844089 844808 D phospholipase C related protein 844089..844808 Clostridium novyi NT 4540144 YP_877720.1 CDS NT01CX_1639 NC_008593.1 844964 845491 D hypothetical protein 844964..845491 Clostridium novyi NT 4540997 YP_877721.1 CDS NT01CX_1640 NC_008593.1 845451 847223 D identified by match to protein family HMM PF02310; match to protein family HMM PF04055; magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 845451..847223 Clostridium novyi NT 4540998 YP_877722.1 CDS NT01CX_1641 NC_008593.1 847460 847795 D V-type sodium ATP synthase subunit G 847460..847795 Clostridium novyi NT 4541738 YP_877723.1 CDS atpI NC_008593.1 847782 849737 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 847782..849737 Clostridium novyi NT 4539791 YP_877724.1 CDS atpK NC_008593.1 849827 850327 D produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 849827..850327 Clostridium novyi NT 4541071 YP_877725.1 CDS NT01CX_1644 NC_008593.1 850364 850960 D identified by match to protein family HMM PF01991; ATP synthase (E/31 kDa) subunit 850364..850960 Clostridium novyi NT 4541684 YP_877726.1 CDS NT01CX_1645 NC_008593.1 850974 851975 D produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C 850974..851975 Clostridium novyi NT 4539873 YP_877727.1 CDS NT01CX_1646 NC_008593.1 851968 852276 D produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 851968..852276 Clostridium novyi NT 4540160 YP_877728.1 CDS NT01CX_1647 NC_008593.1 852295 854070 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 852295..854070 Clostridium novyi NT 4540969 YP_877729.1 CDS atpB NC_008593.1 854063 855445 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 854063..855445 Clostridium novyi NT 4540966 YP_877730.1 CDS NT01CX_1649 NC_008593.1 855448 856098 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 855448..856098 Clostridium novyi NT 4541012 YP_877731.1 CDS NT01CX_1650 NC_008593.1 856270 856746 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 856270..856746 Clostridium novyi NT 4541061 YP_877732.1 CDS NT01CX_1651 NC_008593.1 856893 857402 D hypothetical protein 856893..857402 Clostridium novyi NT 4541203 YP_877733.1 CDS NT01CX_1652 NC_008593.1 857553 857891 D hypothetical protein 857553..857891 Clostridium novyi NT 4541741 YP_877734.1 CDS NT01CX_1653 NC_008593.1 857914 860199 D superfamily I DNA helicase 857914..860199 Clostridium novyi NT 4539918 YP_877735.1 CDS NT01CX_1654 NC_008593.1 860240 861427 D identified by match to protein family HMM PF00258; match to protein family HMM PF00753; flavodoxin 860240..861427 Clostridium novyi NT 4539678 YP_877736.1 CDS glpX NC_008593.1 862020 862988 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 862020..862988 Clostridium novyi NT 4541804 YP_877737.1 CDS NT01CX_1656 NC_008593.1 863163 864086 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 863163..864086 Clostridium novyi NT 4541277 YP_877738.1 CDS NT01CX_1657 NC_008593.1 864070 864621 D identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 864070..864621 Clostridium novyi NT 4540835 YP_877739.1 CDS NT01CX_1658 NC_008593.1 864667 865608 D identified by match to protein family HMM PF01544; divalent cation transporter 864667..865608 Clostridium novyi NT 4539968 YP_877740.1 CDS NT01CX_1659 NC_008593.1 865699 867108 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 865699..867108 Clostridium novyi NT 4541977 YP_877741.1 CDS NT01CX_1660 NC_008593.1 867160 867357 R hypothetical protein complement(867160..867357) Clostridium novyi NT 4541732 YP_877742.1 CDS NT01CX_1661 NC_008593.1 867411 868244 R similar to YciV; identified by match to protein family HMM PF02231; metal-dependent phosphoesterase complement(867411..868244) Clostridium novyi NT 4539760 YP_877743.1 CDS NT01CX_1662 NC_008593.1 868407 871328 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; zinc-dependent peptidase 868407..871328 Clostridium novyi NT 4541634 YP_877744.1 CDS NT01CX_1663 NC_008593.1 871381 871869 R hypothetical protein complement(871381..871869) Clostridium novyi NT 4541963 YP_877745.1 CDS brnQ NC_008593.1 871952 873280 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(871952..873280) Clostridium novyi NT 4541924 YP_877746.1 CDS NT01CX_1665 NC_008593.1 873608 873763 D hypothetical protein 873608..873763 Clostridium novyi NT 4541511 YP_877747.1 CDS NT01CX_1666 NC_008593.1 873848 875017 R ISBma2, transposase complement(873848..875017) Clostridium novyi NT 4540034 YP_877748.1 CDS NT01CX_1667 NC_008593.1 875002 875286 R ISBma2, transposase complement(875002..875286) Clostridium novyi NT 4540241 YP_877749.1 CDS NT01CX_1668 NC_008593.1 875582 876340 D hypothetical protein 875582..876340 Clostridium novyi NT 4540654 YP_877750.1 CDS NT01CX_1669 NC_008593.1 876482 877561 D identified by match to protein family HMM PF00557; proline dipeptidase 876482..877561 Clostridium novyi NT 4540104 YP_877751.1 CDS NT01CX_1670 NC_008593.1 877657 877986 D hypothetical protein 877657..877986 Clostridium novyi NT 4541083 YP_877752.1 CDS NT01CX_1671 NC_008593.1 878102 878257 D hypothetical protein 878102..878257 Clostridium novyi NT 4541820 YP_877753.1 CDS NT01CX_1672 NC_008593.1 878331 878483 R hypothetical protein complement(878331..878483) Clostridium novyi NT 4539986 YP_877754.1 CDS NT01CX_1673 NC_008593.1 878701 880473 D hypothetical protein 878701..880473 Clostridium novyi NT 4541763 YP_877755.1 CDS NT01CX_1674 NC_008593.1 880601 880966 D identified by match to protein family HMM TIGR01909; C GCAxxG C C family protein subfamily 880601..880966 Clostridium novyi NT 4539769 YP_877756.1 CDS NT01CX_1675 NC_008593.1 881270 881566 D hypothetical protein 881270..881566 Clostridium novyi NT 4540848 YP_877757.1 CDS NT01CX_1677 NC_008593.1 882127 884763 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 882127..884763 Clostridium novyi NT 4539782 YP_877758.1 CDS coaE NC_008593.1 884813 885421 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 884813..885421 Clostridium novyi NT 4541078 YP_877759.1 CDS NT01CX_1679 NC_008593.1 885418 886023 D identified by match to protein family HMM PF01464; lytic murein transglycosylase 885418..886023 Clostridium novyi NT 4541944 YP_877760.1 CDS NT01CX_1681 NC_008593.1 886259 886693 D identified by match to protein family HMM PF01842; hypothetical protein 886259..886693 Clostridium novyi NT 4540822 YP_877761.1 CDS NT01CX_1682 NC_008593.1 886766 887260 D hypothetical protein 886766..887260 Clostridium novyi NT 4541189 YP_877762.1 CDS NT01CX_1683 NC_008593.1 887371 887880 D identified by match to protein family HMM PF00583; hypothetical protein 887371..887880 Clostridium novyi NT 4540588 YP_877763.1 CDS NT01CX_1684 NC_008593.1 887967 888689 D hypothetical protein 887967..888689 Clostridium novyi NT 4540613 YP_877764.1 CDS NT01CX_1685 NC_008593.1 888835 889095 D hypothetical protein 888835..889095 Clostridium novyi NT 4541131 YP_877765.1 CDS NT01CX_1686 NC_008593.1 889106 889681 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 889106..889681 Clostridium novyi NT 4540336 YP_877766.1 CDS radC NC_008593.1 889698 890384 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 889698..890384 Clostridium novyi NT 4540103 YP_877767.1 CDS NT01CX_1688 NC_008593.1 890393 891532 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 890393..891532 Clostridium novyi NT 4539966 YP_877768.1 CDS mreC NC_008593.1 891543 892400 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 891543..892400 Clostridium novyi NT 4540218 YP_877769.1 CDS mreD NC_008593.1 892397 892888 D identified by match to protein family HMM PF04093; rod shape-determining protein MreD 892397..892888 Clostridium novyi NT 4541957 YP_877770.1 CDS NT01CX_1691 NC_008593.1 892904 896053 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 892904..896053 Clostridium novyi NT 4539653 YP_877771.1 CDS minC NC_008593.1 896214 896846 D blocks the formation of polar Z-ring septums; septum formation inhibitor 896214..896846 Clostridium novyi NT 4540157 YP_877772.1 CDS minD NC_008593.1 896862 897659 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 896862..897659 Clostridium novyi NT 4539942 YP_877773.1 CDS minE NC_008593.1 897671 897937 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 897671..897937 Clostridium novyi NT 4541783 YP_877774.1 CDS rodA NC_008593.1 898026 899144 D identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 898026..899144 Clostridium novyi NT 4541678 YP_877775.1 CDS mgsA NC_008593.1 899165 899536 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 899165..899536 Clostridium novyi NT 4540189 YP_877776.1 CDS NT01CX_1697 NC_008593.1 899607 900044 R hypothetical protein complement(899607..900044) Clostridium novyi NT 4539659 YP_877777.1 CDS NT01CX_1698 NC_008593.1 900135 901394 R identified by match to protein family HMM PF02040; NadC/P/Pho87 family protein complement(900135..901394) Clostridium novyi NT 4541817 YP_877778.1 CDS NT01CX_1699 NC_008593.1 901538 902869 R identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; hydrogenase (Fe) large chain complement(901538..902869) Clostridium novyi NT 4540577 YP_877779.1 CDS NT01CX_1700 NC_008593.1 903172 903648 D hypothetical protein 903172..903648 Clostridium novyi NT 4539665 YP_877780.1 CDS NT01CX_1701 NC_008593.1 903765 905345 D COG1543; identified by match to protein family HMM PF03065; hypothetical protein 903765..905345 Clostridium novyi NT 4541188 YP_877781.1 CDS NT01CX_1702 NC_008593.1 905472 906725 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 905472..906725 Clostridium novyi NT 4540925 YP_877782.1 CDS recX NC_008593.1 906725 907543 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 906725..907543 Clostridium novyi NT 4540620 YP_877783.1 CDS NT01CX_1704 NC_008593.1 907536 908720 D identified by match to protein family HMM PF01841; transglutaminase 907536..908720 Clostridium novyi NT 4540377 YP_877784.1 CDS NT01CX_1705 NC_008593.1 908747 909106 R identified by match to protein family HMM PF00515; hypothetical protein complement(908747..909106) Clostridium novyi NT 4539916 YP_877785.1 CDS NT01CX_1706 NC_008593.1 909213 910022 R identified by match to protein family HMM PF00528; ABC transporter permease complement(909213..910022) Clostridium novyi NT 4541518 YP_877786.1 CDS NT01CX_1707 NC_008593.1 910015 910779 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(910015..910779) Clostridium novyi NT 4540325 YP_877787.1 CDS NT01CX_1708 NC_008593.1 911067 915356 D identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase domain-containing protein 911067..915356 Clostridium novyi NT 4541772 YP_877788.1 CDS NT01CX_1709 NC_008593.1 915422 916261 R ABC transporter substrate-binding protein complement(915422..916261) Clostridium novyi NT 4539766 YP_877789.1 CDS NT01CX_1710 NC_008593.1 916209 917873 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; site-specific recombinases, DNA invertase Pin-like protein complement(916209..917873) Clostridium novyi NT 4541494 YP_877790.1 CDS NT01CX_1711 NC_008593.1 918007 918177 D hypothetical protein 918007..918177 Clostridium novyi NT 4539704 YP_877791.1 CDS NT01CX_1712 NC_008593.1 918289 918906 D hypothetical protein 918289..918906 Clostridium novyi NT 4540329 YP_877792.1 CDS NT01CX_1713 NC_008593.1 919167 920588 D hypothetical protein 919167..920588 Clostridium novyi NT 4541498 YP_877793.1 CDS NT01CX_1714 NC_008593.1 920582 921643 D hypothetical protein 920582..921643 Clostridium novyi NT 4539943 YP_877794.1 CDS NT01CX_1715 NC_008593.1 922289 922954 R hypothetical protein complement(922289..922954) Clostridium novyi NT 4541693 YP_877795.1 CDS NT01CX_1716 NC_008593.1 923145 924680 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; DNA recombinase complement(923145..924680) Clostridium novyi NT 4541001 YP_877796.1 CDS NT01CX_1717 NC_008593.1 924616 926127 R identified by match to protein family HMM PF00239; site-specific recombinases, DNA invertase Pin-like protein complement(924616..926127) Clostridium novyi NT 4541530 YP_877797.1 CDS NT01CX_1718 NC_008593.1 926257 926802 R RNA polymerase sigma factor complement(926257..926802) Clostridium novyi NT 4541325 YP_877798.1 CDS NT01CX_1719 NC_008593.1 926903 927307 R identified by match to protein family HMM PF01381; helix-turn-helix domain-containing protein complement(926903..927307) Clostridium novyi NT 4539679 YP_877799.1 CDS NT01CX_1720 NC_008593.1 927562 929088 D hypothetical protein 927562..929088 Clostridium novyi NT 4541989 YP_877800.1 CDS NT01CX_1721 NC_008593.1 929481 929729 R ABC transporter substrate-binding protein complement(929481..929729) Clostridium novyi NT 4541809 YP_877801.1 CDS NT01CX_1722 NC_008593.1 929790 930233 D hypothetical protein 929790..930233 Clostridium novyi NT 4540307 YP_877802.1 CDS NT01CX_1723 NC_008593.1 930488 931021 D lipoprotein 930488..931021 Clostridium novyi NT 4539975 YP_877803.1 CDS NT01CX_1724 NC_008593.1 931095 932012 D identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 931095..932012 Clostridium novyi NT 4541645 YP_877804.1 CDS NT01CX_1725 NC_008593.1 932347 933270 D identified by match to protein family HMM PF00294; 1-phosphofructokinase 932347..933270 Clostridium novyi NT 4540845 YP_877805.1 CDS NT01CX_1726 NC_008593.1 933318 933848 R inactivated, HRDL motif absent; serine/threonine kinase related protein complement(933318..933848) Clostridium novyi NT 4541864 YP_877806.1 CDS valS NC_008593.1 934272 936911 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 934272..936911 Clostridium novyi NT 4540310 YP_877807.1 CDS NT01CX_1728 NC_008593.1 936987 937139 D hypothetical protein 936987..937139 Clostridium novyi NT 4541187 YP_877808.1 CDS NT01CX_1729 NC_008593.1 937177 938487 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase 937177..938487 Clostridium novyi NT 4541943 YP_877809.1 CDS NT01CX_1730 NC_008593.1 938534 939640 R identified by match to protein family HMM PF01594; permease complement(938534..939640) Clostridium novyi NT 4540586 YP_877810.1 CDS NT01CX_1731 NC_008593.1 939648 939791 D hypothetical protein 939648..939791 Clostridium novyi NT 4540456 YP_877811.1 CDS NT01CX_1732 NC_008593.1 940034 940639 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 940034..940639 Clostridium novyi NT 4539854 YP_877812.1 CDS NT01CX_1733 NC_008593.1 940774 941031 R hypothetical protein complement(940774..941031) Clostridium novyi NT 4540924 YP_877813.1 CDS NT01CX_1734 NC_008593.1 941171 942055 D hypothetical protein 941171..942055 Clostridium novyi NT 4539637 YP_877814.1 CDS NT01CX_1735 NC_008593.1 942064 942588 R hypothetical protein complement(942064..942588) Clostridium novyi NT 4540214 YP_877815.1 CDS NT01CX_1736 NC_008593.1 942796 943566 D identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 942796..943566 Clostridium novyi NT 4541504 YP_877816.1 CDS NT01CX_1737 NC_008593.1 943744 944406 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 943744..944406 Clostridium novyi NT 4541862 YP_877817.1 CDS NT01CX_1738 NC_008593.1 944438 945148 R identified by match to protein family HMM PF00132; tetrahydrodipicolinate N-succinyltransferase complement(944438..945148) Clostridium novyi NT 4540792 YP_877818.1 CDS NT01CX_1739 NC_008593.1 945376 946530 D identified by match to protein family HMM PF00155; class I aminotransferase 945376..946530 Clostridium novyi NT 4540275 YP_877819.1 CDS NT01CX_1740 NC_008593.1 946907 948616 D identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic protein 946907..948616 Clostridium novyi NT 4540843 YP_877820.1 CDS NT01CX_1741 NC_008593.1 948768 949718 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 948768..949718 Clostridium novyi NT 4541968 YP_877821.1 CDS NT01CX_1742 NC_008593.1 949731 950648 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 949731..950648 Clostridium novyi NT 4541519 YP_877822.1 CDS NT01CX_1743 NC_008593.1 950661 951686 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATPase 950661..951686 Clostridium novyi NT 4541323 YP_877823.1 CDS NT01CX_1744 NC_008593.1 951679 952656 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATPase 951679..952656 Clostridium novyi NT 4541009 YP_877824.1 CDS dapB NC_008593.1 952821 953579 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(952821..953579) Clostridium novyi NT 4540837 YP_877825.1 CDS dapA NC_008593.1 953584 954474 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(953584..954474) Clostridium novyi NT 4540644 YP_877826.1 CDS NT01CX_1747 NC_008593.1 954496 955488 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(954496..955488) Clostridium novyi NT 4541762 YP_877827.1 CDS NT01CX_1748 NC_008593.1 955824 956084 D small acid-soluble spore protein 955824..956084 Clostridium novyi NT 4539620 YP_877828.1 CDS NT01CX_1749 NC_008593.1 956202 956942 D S-adenosylmethionine-dependent methyltransferase 956202..956942 Clostridium novyi NT 4541220 YP_877829.1 CDS hslO NC_008593.1 956954 957838 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 956954..957838 Clostridium novyi NT 4541240 YP_877830.1 CDS NT01CX_1757 NC_008593.1 959020 959919 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 959020..959919 Clostridium novyi NT 4541042 YP_877831.1 CDS NT01CX_1758 NC_008593.1 960028 960732 R hypothetical protein complement(960028..960732) Clostridium novyi NT 4541753 YP_877832.1 CDS NT01CX_1759 NC_008593.1 960855 961712 D hypothetical protein 960855..961712 Clostridium novyi NT 4539583 YP_877833.1 CDS thrS NC_008593.1 962100 964013 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 962100..964013 Clostridium novyi NT 4541193 YP_877834.1 CDS NT01CX_1761 NC_008593.1 964371 964775 D identified by match to protein family HMM PF00707; match to protein family HMM PF05198; translation initiation factor IF-3 964371..964775 Clostridium novyi NT 4540130 YP_877835.1 CDS rpmI NC_008593.1 964794 964991 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 964794..964991 Clostridium novyi NT 4540322 YP_877836.1 CDS rplT NC_008593.1 965021 965380 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 965021..965380 Clostridium novyi NT 4541038 YP_877837.1 CDS NT01CX_1764 NC_008593.1 965480 966814 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transport protein 965480..966814 Clostridium novyi NT 4541333 YP_877838.1 CDS NT01CX_1765 NC_008593.1 966818 967489 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; trk system potassium uptake protein trkA 966818..967489 Clostridium novyi NT 4541496 YP_877839.1 CDS NT01CX_1766 NC_008593.1 967500 968288 D similar to YSGA B. subtilis; identified by match to protein family HMM PF00588; rRNA methylase 967500..968288 Clostridium novyi NT 4540806 YP_877840.1 CDS pheS NC_008593.1 968637 969656 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 968637..969656 Clostridium novyi NT 4541786 YP_877841.1 CDS pheT NC_008593.1 969686 972061 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 969686..972061 Clostridium novyi NT 4539771 YP_877842.1 CDS NT01CX_1769 NC_008593.1 972139 972732 D identified by match to protein family HMM PF05164; hypothetical protein 972139..972732 Clostridium novyi NT 4541823 YP_877843.1 CDS NT01CX_1770 NC_008593.1 973357 973962 D hypothetical protein 973357..973962 Clostridium novyi NT 4541137 YP_877844.1 CDS NT01CX_1771 NC_008593.1 974053 974628 R identified by match to protein family HMM PF00080; superoxide dismutase complement(974053..974628) Clostridium novyi NT 4541761 YP_877845.1 CDS NT01CX_1772 NC_008593.1 974779 977124 D identified by match to protein family HMM PF01136; protease 974779..977124 Clostridium novyi NT 4540748 YP_877846.1 CDS NT01CX_1773 NC_008593.1 977126 979483 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 977126..979483 Clostridium novyi NT 4539953 YP_877847.1 CDS NT01CX_1774 NC_008593.1 979507 979977 D identified by match to protein family HMM PF04463; hypothetical protein 979507..979977 Clostridium novyi NT 4540923 YP_877848.1 CDS NT01CX_1775 NC_008593.1 980004 980597 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 980004..980597 Clostridium novyi NT 4541286 YP_877849.1 CDS NT01CX_1776 NC_008593.1 980731 982473 D identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 980731..982473 Clostridium novyi NT 4540840 YP_877850.1 CDS NT01CX_1777 NC_008593.1 982686 983765 D identified by match to protein family HMM PF00515; hypothetical protein 982686..983765 Clostridium novyi NT 4540161 YP_877851.1 CDS galU NC_008593.1 983804 984718 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 983804..984718 Clostridium novyi NT 4541069 YP_877852.1 CDS NT01CX_1779 NC_008593.1 984895 986733 D identified by match to protein family HMM PF02719; polysaccharide biosynthesis family protein 984895..986733 Clostridium novyi NT 4541509 YP_877853.1 CDS NT01CX_1780 NC_008593.1 986912 988228 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase 986912..988228 Clostridium novyi NT 4539947 YP_877854.1 CDS NT01CX_1781 NC_008593.1 988290 989402 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; lipopolysaccharide biosynthesis protein 988290..989402 Clostridium novyi NT 4540235 YP_877855.1 CDS NT01CX_1782 NC_008593.1 989422 990162 D identified by match to protein family HMM PF00132; acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine acyltransferase 989422..990162 Clostridium novyi NT 4540046 YP_877856.1 CDS NT01CX_1783 NC_008593.1 990337 991047 D acylneuraminate cytidylyltransferase 990337..991047 Clostridium novyi NT 4542000 YP_877857.1 CDS NT01CX_1784 NC_008593.1 991040 992098 D identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 991040..992098 Clostridium novyi NT 4541068 YP_877858.1 CDS NT01CX_1785 NC_008593.1 992117 993265 D identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 992117..993265 Clostridium novyi NT 4540660 YP_877859.1 CDS NT01CX_1786 NC_008593.1 993300 993938 D identified by match to protein family HMM PF00132; hexapeptide transferase family protein 993300..993938 Clostridium novyi NT 4540148 YP_877860.1 CDS NT01CX_1787 NC_008593.1 993946 994992 D identified by match to protein family HMM PF00483; match to protein family HMM PF00571; sugar-phosphate nucleotide transferase 993946..994992 Clostridium novyi NT 4540321 YP_877861.1 CDS NT01CX_1788 NC_008593.1 995017 996012 D identified by match to protein family HMM PF01370; UDP-glucose 4-epimerase 995017..996012 Clostridium novyi NT 4540501 YP_877862.1 CDS NT01CX_1789 NC_008593.1 996027 997124 D identified by match to protein family HMM PF01041; perosamine synthetase 996027..997124 Clostridium novyi NT 4540372 YP_877863.1 CDS mviN NC_008593.1 997249 998796 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 997249..998796 Clostridium novyi NT 4540159 YP_877864.1 CDS NT01CX_1791 NC_008593.1 998818 1000173 D hypothetical protein 998818..1000173 Clostridium novyi NT 4540425 YP_877865.1 CDS NT01CX_1792 NC_008593.1 1000204 1001328 D glycosyl transferase family protein 1000204..1001328 Clostridium novyi NT 4540138 YP_877866.1 CDS NT01CX_1793 NC_008593.1 1001330 1002421 D identified by match to protein family HMM PF00534; glycoside hydrolase 1001330..1002421 Clostridium novyi NT 4540804 YP_877867.1 CDS NT01CX_1794 NC_008593.1 1002469 1003953 D hypothetical protein 1002469..1003953 Clostridium novyi NT 4539731 YP_877868.1 CDS NT01CX_1795 NC_008593.1 1003982 1005007 D identified by match to protein family HMM PF00535; succinoglycan biosynthesis protein exoA 1003982..1005007 Clostridium novyi NT 4540514 YP_877869.1 CDS NT01CX_1796 NC_008593.1 1005103 1006374 D identified by match to protein family HMM PF04932; membrane protein 1005103..1006374 Clostridium novyi NT 4540981 YP_877870.1 CDS NT01CX_1797 NC_008593.1 1006414 1007067 D identified by match to protein family HMM PF02397; undecaprenyl-phosphate glucosephosphotransferase 1006414..1007067 Clostridium novyi NT 4541191 YP_877871.1 CDS NT01CX_1798 NC_008593.1 1007074 1007805 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; teichoic acid biosynthesis protein A 1007074..1007805 Clostridium novyi NT 4541787 YP_877872.1 CDS NT01CX_1799 NC_008593.1 1007828 1009237 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1007828..1009237 Clostridium novyi NT 4541896 YP_877873.1 CDS NT01CX_1800 NC_008593.1 1009262 1010386 D identified by match to protein family HMM PF00534; glycosyltransferase 1009262..1010386 Clostridium novyi NT 4541683 YP_877874.1 CDS noxC NC_008593.1 1010448 1011026 D identified by match to protein family HMM PF00881; nitroreductase family protein 1010448..1011026 Clostridium novyi NT 4539703 YP_877875.1 CDS NT01CX_1802 NC_008593.1 1011201 1011839 D identified by match to protein family HMM PF04961; formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase 1011201..1011839 Clostridium novyi NT 4539662 YP_877876.1 CDS NT01CX_1803 NC_008593.1 1011854 1013626 D type IIS restriction enzyme R and M protein 1011854..1013626 Clostridium novyi NT 4541967 YP_877877.1 CDS NT01CX_1804 NC_008593.1 1013747 1014082 D identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma F factor antagonist 1013747..1014082 Clostridium novyi NT 4539969 YP_877878.1 CDS spoIIAB NC_008593.1 1014097 1014528 D binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 1014097..1014528 Clostridium novyi NT 4540754 YP_877879.1 CDS NT01CX_1806 NC_008593.1 1014574 1015329 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 1014574..1015329 Clostridium novyi NT 4539759 YP_877880.1 CDS NT01CX_1807 NC_008593.1 1015452 1015904 D identified by match to protein family HMM PF03862; stage V sporulation protein AC 1015452..1015904 Clostridium novyi NT 4541910 YP_877881.1 CDS NT01CX_1808 NC_008593.1 1015938 1016966 D identified by match to protein family HMM PF07451; stage V sporulation protein AD 1015938..1016966 Clostridium novyi NT 4539663 YP_877882.1 CDS NT01CX_1809 NC_008593.1 1016968 1017324 D identified by match to protein family HMM PF03862; stage V sporulation protein AE 1016968..1017324 Clostridium novyi NT 4541280 YP_877883.1 CDS ponA NC_008593.1 1017428 1020019 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1A/1B complement(1017428..1020019) Clostridium novyi NT 4540909 YP_877884.1 CDS NT01CX_1811 NC_008593.1 1020218 1020745 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(1020218..1020745) Clostridium novyi NT 4541961 YP_877885.1 CDS NT01CX_1812 NC_008593.1 1020882 1021004 D hypothetical protein 1020882..1021004 Clostridium novyi NT 4541777 YP_877886.1 CDS NT01CX_1813 NC_008593.1 1021111 1022895 D identified by match to protein family HMM TIGR00231; GTP-binding protein 1021111..1022895 Clostridium novyi NT 4541205 YP_877887.1 CDS trzA NC_008593.1 1022936 1024219 D identified by match to protein family HMM PF01979; chlorohydrolase 1022936..1024219 Clostridium novyi NT 4541507 YP_877888.1 CDS NT01CX_1815 NC_008593.1 1024268 1025167 D identified by match to protein family HMM PF01909; hypothetical protein 1024268..1025167 Clostridium novyi NT 4541282 YP_877889.1 CDS NT01CX_1816 NC_008593.1 1025227 1026651 D identified by match to protein family HMM PF00392; MocR family transcriptional regulator 1025227..1026651 Clostridium novyi NT 4540621 YP_877890.1 CDS NT01CX_1817 NC_008593.1 1026648 1027352 D identified by match to protein family HMM PF03130; hypothetical protein 1026648..1027352 Clostridium novyi NT 4540574 YP_877891.1 CDS NT01CX_1818 NC_008593.1 1027349 1028011 D identified by match to protein family HMM PF01205; thymidylate synthase 1027349..1028011 Clostridium novyi NT 4540967 YP_877892.1 CDS NT01CX_1819 NC_008593.1 1028122 1028862 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1028122..1028862 Clostridium novyi NT 4541870 YP_877893.1 CDS NT01CX_1820 NC_008593.1 1029367 1029846 D pemK family DNA-binding protein 1029367..1029846 Clostridium novyi NT 4541812 YP_877894.1 CDS NT01CX_1821 NC_008593.1 1030337 1030438 D hypothetical protein 1030337..1030438 Clostridium novyi NT 4539758 YP_877895.1 CDS NT01CX_1822 NC_008593.1 1030964 1031278 D hypothetical protein 1030964..1031278 Clostridium novyi NT 4541754 YP_877896.1 CDS NT01CX_1823 NC_008593.1 1031508 1032764 D identified by match to protein family HMM PF02447; gluconate permease 1031508..1032764 Clostridium novyi NT 4540796 YP_877897.1 CDS NT01CX_1824 NC_008593.1 1032969 1034696 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 1032969..1034696 Clostridium novyi NT 4540281 YP_877898.1 CDS NT01CX_1825 NC_008593.1 1034693 1036552 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug ABC transporter ATPase 1034693..1036552 Clostridium novyi NT 4540517 YP_877899.1 CDS NT01CX_1826 NC_008593.1 1036601 1037044 R similar to YTFJ B. subtilis; hypothetical protein complement(1036601..1037044) Clostridium novyi NT 4541920 YP_877900.1 CDS NT01CX_1827 NC_008593.1 1037109 1037648 R membrane associated protein complement(1037109..1037648) Clostridium novyi NT 4540593 YP_877901.1 CDS NT01CX_1828 NC_008593.1 1037771 1039144 R identified by match to protein family HMM PF07670; membrane protein complement(1037771..1039144) Clostridium novyi NT 4541248 YP_877902.1 CDS NT01CX_1829 NC_008593.1 1039344 1039712 D hypothetical protein 1039344..1039712 Clostridium novyi NT 4540980 YP_877903.1 CDS NT01CX_1830 NC_008593.1 1039794 1040639 D hypothetical protein 1039794..1040639 Clostridium novyi NT 4541899 YP_877904.1 CDS NT01CX_1831 NC_008593.1 1040761 1041384 D hypothetical protein 1040761..1041384 Clostridium novyi NT 4540762 YP_877905.1 CDS ruvA NC_008593.1 1041461 1042108 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1041461..1042108 Clostridium novyi NT 4541231 YP_877906.1 CDS ruvB NC_008593.1 1042120 1043133 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1042120..1043133 Clostridium novyi NT 4541185 YP_877907.1 CDS queA NC_008593.1 1043139 1044173 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1043139..1044173 Clostridium novyi NT 4540095 YP_877908.1 CDS tgt NC_008593.1 1044202 1045350 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1044202..1045350 Clostridium novyi NT 4539638 YP_877909.1 CDS yajC NC_008593.1 1045403 1045684 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1045403..1045684 Clostridium novyi NT 4540227 YP_877910.1 CDS NT01CX_1837 NC_008593.1 1045739 1046107 D hypothetical protein 1045739..1046107 Clostridium novyi NT 4541044 YP_877911.1 CDS NT01CX_1838 NC_008593.1 1046182 1046319 D hypothetical protein 1046182..1046319 Clostridium novyi NT 4540827 YP_877912.1 CDS nirJ NC_008593.1 1046463 1047758 D identified by match to protein family HMM PF04055; Heme biosynthesis 1046463..1047758 Clostridium novyi NT 4540135 YP_877913.1 CDS secD NC_008593.1 1047849 1049114 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1047849..1049114 Clostridium novyi NT 4539618 YP_877914.1 CDS secF NC_008593.1 1049120 1049989 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1049120..1049989 Clostridium novyi NT 4541199 YP_877915.1 CDS NT01CX_1842 NC_008593.1 1050179 1051057 D identified by match to protein family HMM PF01368; single-stranded-DNA-specific exonuclease RecJ 1050179..1051057 Clostridium novyi NT 4541051 YP_877916.1 CDS NT01CX_1843 NC_008593.1 1051097 1051615 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1051097..1051615 Clostridium novyi NT 4540316 YP_877917.1 CDS NT01CX_1844 NC_008593.1 1051716 1053905 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1051716..1053905 Clostridium novyi NT 4540139 YP_877918.1 CDS NT01CX_1845 NC_008593.1 1053960 1054409 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1053960..1054409 Clostridium novyi NT 4540194 YP_877919.1 CDS NT01CX_1846 NC_008593.1 1054436 1055035 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1054436..1055035 Clostridium novyi NT 4540106 YP_877920.1 CDS NT01CX_1847 NC_008593.1 1055054 1056487 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1055054..1056487 Clostridium novyi NT 4539596 YP_877921.1 CDS hisS NC_008593.1 1056501 1057751 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1056501..1057751 Clostridium novyi NT 4541527 YP_877922.1 CDS aspS NC_008593.1 1057769 1059550 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1057769..1059550 Clostridium novyi NT 4541056 YP_877923.1 CDS NT01CX_1850 NC_008593.1 1059847 1060119 D COG1937 family; identified by match to protein family HMM PF02583; hypothetical protein 1059847..1060119 Clostridium novyi NT 4540232 YP_877924.1 CDS NT01CX_1851 NC_008593.1 1060109 1060546 R membrane spanning protein complement(1060109..1060546) Clostridium novyi NT 4540155 YP_877925.1 CDS NT01CX_1852 NC_008593.1 1060548 1061324 R identified by match to protein family HMM PF06738; membrane spanning protein complement(1060548..1061324) Clostridium novyi NT 4540615 YP_877926.1 CDS glyA NC_008593.1 1061478 1062713 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1061478..1062713 Clostridium novyi NT 4540659 YP_877927.1 CDS nifJ NC_008593.1 1063225 1066731 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1063225..1066731 Clostridium novyi NT 4541831 YP_877928.1 CDS NT01CX_1855 NC_008593.1 1066910 1067272 D hypothetical protein 1066910..1067272 Clostridium novyi NT 4539928 YP_877929.1 CDS NT01CX_1856 NC_008593.1 1067342 1067983 D identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 1067342..1067983 Clostridium novyi NT 4539946 YP_877930.1 CDS NT01CX_1857 NC_008593.1 1067996 1068817 D identified by match to protein family HMM PF01063; branched-chain amino acid aminotransferase 1067996..1068817 Clostridium novyi NT 4541537 YP_877931.1 CDS NT01CX_1858 NC_008593.1 1068919 1070886 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system transporter subunit IIABC 1068919..1070886 Clostridium novyi NT 4541130 YP_877932.1 CDS NT01CX_1859 NC_008593.1 1071087 1073054 D identified by match to protein family HMM PF03961; hypothetical protein 1071087..1073054 Clostridium novyi NT 4540341 YP_877933.1 CDS cheW NC_008593.1 1073067 1073519 D identified by match to protein family HMM PF01584; chemotaxis protein CheW 1073067..1073519 Clostridium novyi NT 4539706 YP_877934.1 CDS NT01CX_1861 NC_008593.1 1073529 1074017 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1073529..1074017 Clostridium novyi NT 4541081 YP_877935.1 CDS NT01CX_1862 NC_008593.1 1074033 1075094 D identified by match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 1074033..1075094 Clostridium novyi NT 4540055 YP_877936.1 CDS NT01CX_1863 NC_008593.1 1075097 1075864 D identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein CheR 1075097..1075864 Clostridium novyi NT 4540400 YP_877937.1 CDS cheA NC_008593.1 1075877 1077940 D identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA 1075877..1077940 Clostridium novyi NT 4541232 YP_877938.1 CDS NT01CX_1865 NC_008593.1 1077953 1078555 D identified by match to protein family HMM PF04509; chemotaxis protein CheC 1077953..1078555 Clostridium novyi NT 4540164 YP_877939.1 CDS NT01CX_1866 NC_008593.1 1078571 1078930 D identified by match to protein family HMM PF00072; chemotaxis protein CheY 1078571..1078930 Clostridium novyi NT 4540048 YP_877940.1 CDS cheW NC_008593.1 1078972 1079370 D identified by match to protein family HMM PF01584; chemotaxis protein CheW 1078972..1079370 Clostridium novyi NT 4540238 YP_877941.1 CDS fliM NC_008593.1 1079391 1080386 D identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 1079391..1080386 Clostridium novyi NT 4541908 YP_877942.1 CDS NT01CX_1869 NC_008593.1 1080379 1081569 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1080379..1081569 Clostridium novyi NT 4540050 YP_877943.1 CDS NT01CX_1870 NC_008593.1 1081779 1082039 D identified by match to protein family HMM PF04316; flagellin synthesis regulator FlgM 1081779..1082039 Clostridium novyi NT 4540100 YP_877944.1 CDS NT01CX_1871 NC_008593.1 1082144 1082542 D hypothetical protein 1082144..1082542 Clostridium novyi NT 4540633 YP_877945.1 CDS NT01CX_1872 NC_008593.1 1082564 1084594 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook-associated protein 1 1082564..1084594 Clostridium novyi NT 4540571 YP_877946.1 CDS NT01CX_1873 NC_008593.1 1084625 1085602 D identified by match to protein family HMM PF00669; flagellar hook-associated protein 3 1084625..1085602 Clostridium novyi NT 4540440 YP_877947.1 CDS NT01CX_1874 NC_008593.1 1085677 1086108 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1085677..1086108 Clostridium novyi NT 4540568 YP_877948.1 CDS csrA NC_008593.1 1086108 1086326 D identified by match to protein family HMM TIGR00202; carbon storage regulator 1086108..1086326 Clostridium novyi NT 4540619 YP_877949.1 CDS NT01CX_1876 NC_008593.1 1086376 1086753 D similar to YVYC B. subtilis; identified by match to protein family HMM PF03646; flagellin family protein 1086376..1086753 Clostridium novyi NT 4539977 YP_877950.1 CDS NT01CX_1877 NC_008593.1 1086780 1087067 D hypothetical protein 1086780..1087067 Clostridium novyi NT 4541227 YP_877951.1 CDS fliS NC_008593.1 1087104 1087490 D identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 1087104..1087490 Clostridium novyi NT 4540753 YP_877952.1 CDS NT01CX_1879 NC_008593.1 1087569 1089080 D identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar cap protein fliD 1087569..1089080 Clostridium novyi NT 4539962 YP_877953.1 CDS NT01CX_1880 NC_008593.1 1089084 1089422 D hypothetical protein 1089084..1089422 Clostridium novyi NT 4541801 YP_877954.1 CDS fliC NC_008593.1 1089532 1090344 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein FliA(A) 1089532..1090344 Clostridium novyi NT 4539984 YP_877955.1 CDS fliC NC_008593.1 1090565 1091377 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein FliB(A) 1090565..1091377 Clostridium novyi NT 4541703 YP_877956.1 CDS NT01CX_1883 NC_008593.1 1091489 1093228 D identified by match to protein family HMM PF01973; hypothetical protein 1091489..1093228 Clostridium novyi NT 4540127 YP_877957.1 CDS NT01CX_1884 NC_008593.1 1093231 1094457 D identified by match to protein family HMM PF01973; hypothetical protein 1093231..1094457 Clostridium novyi NT 4541536 YP_877958.1 CDS NT01CX_1885 NC_008593.1 1094582 1094932 D hypothetical protein 1094582..1094932 Clostridium novyi NT 4539785 YP_877959.1 CDS NT01CX_1886 NC_008593.1 1094948 1095979 D identified by match to protein family HMM PF02719; UDP-N-acetylglucosamine 4,6-dehydratase 1094948..1095979 Clostridium novyi NT 4541635 YP_877960.1 CDS NT01CX_1887 NC_008593.1 1096013 1097149 D LPS biosynthesis protein WbpG 1096013..1097149 Clostridium novyi NT 4540627 YP_877961.1 CDS spsF NC_008593.1 1097133 1097897 D identified by match to protein family HMM PF02348; spore coat polysaccharide biosynthesis protein spsF 1097133..1097897 Clostridium novyi NT 4539617 YP_877962.1 CDS NT01CX_1889 NC_008593.1 1097922 1098386 D hypothetical protein 1097922..1098386 Clostridium novyi NT 4540137 YP_877963.1 CDS NT01CX_1890 NC_008593.1 1098507 1099466 D glycosyltransferase 1098507..1099466 Clostridium novyi NT 4540165 YP_877964.1 CDS NT01CX_1891 NC_008593.1 1099497 1100549 D identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 1099497..1100549 Clostridium novyi NT 4540190 YP_877965.1 CDS NT01CX_1892 NC_008593.1 1100581 1101588 D identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein 1100581..1101588 Clostridium novyi NT 4541491 YP_877966.1 CDS NT01CX_1893 NC_008593.1 1101607 1102305 D identified by match to protein family HMM PF00483; licC protein 1101607..1102305 Clostridium novyi NT 4541953 YP_877967.1 CDS NT01CX_1894 NC_008593.1 1102390 1103280 D choline kinase 1102390..1103280 Clostridium novyi NT 4540653 YP_877968.1 CDS NT01CX_1895 NC_008593.1 1103293 1105305 D identified by match to protein family HMM PF00884; sulfatase 1103293..1105305 Clostridium novyi NT 4541517 YP_877969.1 CDS NT01CX_1896 NC_008593.1 1105318 1106262 D identified by match to protein family HMM PF00892; licB protein 1105318..1106262 Clostridium novyi NT 4539726 YP_877970.1 CDS NT01CX_1897 NC_008593.1 1106441 1107247 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 1106441..1107247 Clostridium novyi NT 4539886 YP_877971.1 CDS NT01CX_1898 NC_008593.1 1107278 1108111 D identified by match to protein family HMM PF00700; flagellin 1107278..1108111 Clostridium novyi NT 4539699 YP_877972.1 CDS flgB NC_008593.1 1108434 1108838 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1108434..1108838 Clostridium novyi NT 4540637 YP_877973.1 CDS flgC NC_008593.1 1108841 1109278 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1108841..1109278 Clostridium novyi NT 4540143 YP_877974.1 CDS fliE NC_008593.1 1109341 1109652 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1109341..1109652 Clostridium novyi NT 4540625 YP_877975.1 CDS fliF NC_008593.1 1109668 1111239 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1109668..1111239 Clostridium novyi NT 4539792 YP_877976.1 CDS fliG NC_008593.1 1111245 1112258 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1111245..1112258 Clostridium novyi NT 4541528 YP_877977.1 CDS NT01CX_1904 NC_008593.1 1112242 1113039 D fliH protein 1112242..1113039 Clostridium novyi NT 4539845 YP_877978.1 CDS NT01CX_1905 NC_008593.1 1113073 1114389 D identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; flagellum-specific ATP synthase 1113073..1114389 Clostridium novyi NT 4540918 YP_877979.1 CDS NT01CX_1906 NC_008593.1 1114410 1114844 D flagellar protein fliJ 1114410..1114844 Clostridium novyi NT 4541208 YP_877980.1 CDS NT01CX_1907 NC_008593.1 1114865 1116217 D identified by match to protein family HMM PF02120; flagellar hook-length control protein 1114865..1116217 Clostridium novyi NT 4540368 YP_877981.1 CDS flgD NC_008593.1 1116229 1117053 D identified by match to protein family HMM PF03963; flagellar hook assembly protein FlgD 1116229..1117053 Clostridium novyi NT 4541808 YP_877982.1 CDS NT01CX_1909 NC_008593.1 1117072 1117473 D hypothetical protein 1117072..1117473 Clostridium novyi NT 4539674 YP_877983.1 CDS flgE NC_008593.1 1117542 1118999 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein FlgG 1117542..1118999 Clostridium novyi NT 4541329 YP_877984.1 CDS NT01CX_1911 NC_008593.1 1119160 1119351 D identified by match to protein family HMM PF06289; flagellar protein flbD -like protein 1119160..1119351 Clostridium novyi NT 4540868 YP_877985.1 CDS motA NC_008593.1 1119365 1120174 D identified by match to protein family HMM PF01618; chemotaxis motA protein 1119365..1120174 Clostridium novyi NT 4541842 YP_877986.1 CDS NT01CX_1913 NC_008593.1 1120167 1120892 D identified by match to protein family HMM PF00691; chemotaxis motB protein 1120167..1120892 Clostridium novyi NT 4541063 YP_877987.1 CDS NT01CX_1914 NC_008593.1 1120894 1121382 D identified by match to protein family HMM PF03748; flagellar protein FliL 1120894..1121382 Clostridium novyi NT 4540343 YP_877988.1 CDS NT01CX_1915 NC_008593.1 1121394 1121750 D flagellar biosynthesis protein FliZ 1121394..1121750 Clostridium novyi NT 4540817 YP_877989.1 CDS fliP NC_008593.1 1121747 1122520 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1121747..1122520 Clostridium novyi NT 4541715 YP_877990.1 CDS fliQ NC_008593.1 1122531 1122800 D identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 1122531..1122800 Clostridium novyi NT 4541794 YP_877991.2 CDS NT01CX_1918 NC_008593.1 1122813 1124645 D FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB 1122813..1124645 Clostridium novyi NT 4539661 YP_877992.1 CDS flhA NC_008593.1 1124649 1126730 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1124649..1126730 Clostridium novyi NT 4540402 YP_877993.1 CDS flhF NC_008593.1 1126727 1127962 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1126727..1127962 Clostridium novyi NT 4540984 YP_877994.1 CDS NT01CX_1921 NC_008593.1 1127956 1128837 D similar to YLXH B. subtilis; identified by match to protein family HMM PF01656; MinD family ATPase 1127956..1128837 Clostridium novyi NT 4540635 YP_877995.1 CDS NT01CX_1922 NC_008593.1 1128850 1129509 D flagellar protein 1128850..1129509 Clostridium novyi NT 4541294 YP_877996.1 CDS NT01CX_1923 NC_008593.1 1129512 1130240 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor for flagellar operon fliA 1129512..1130240 Clostridium novyi NT 4540284 YP_877997.1 CDS NT01CX_1924 NC_008593.1 1130254 1130730 D hypothetical protein 1130254..1130730 Clostridium novyi NT 4541480 YP_877998.1 CDS NT01CX_1925 NC_008593.1 1130748 1130954 D hypothetical protein 1130748..1130954 Clostridium novyi NT 4539987 YP_877999.1 CDS flgG NC_008593.1 1130951 1131751 D makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 1130951..1131751 Clostridium novyi NT 4540245 YP_878000.1 CDS flgG NC_008593.1 1131780 1132556 D makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 1131780..1132556 Clostridium novyi NT 4540030 YP_878001.1 CDS NT01CX_1928 NC_008593.1 1132660 1134306 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(1132660..1134306) Clostridium novyi NT 4541246 YP_878002.1 CDS NT01CX_1929 NC_008593.1 1134488 1137031 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 1134488..1137031 Clostridium novyi NT 4541974 YP_878003.1 CDS NT01CX_1930 NC_008593.1 1137117 1138541 R ISBma2, transposase complement(1137117..1138541) Clostridium novyi NT 4540591 YP_878004.1 CDS NT01CX_1931 NC_008593.1 1138702 1139112 R hypothetical protein complement(1138702..1139112) Clostridium novyi NT 4540276 YP_878005.1 CDS NT01CX_1932 NC_008593.1 1139324 1141606 D identified by match to protein family HMM PF05362; ATP-dependent protease La 1139324..1141606 Clostridium novyi NT 4539765 YP_878006.1 CDS ychF NC_008593.1 1141659 1142756 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1141659..1142756) Clostridium novyi NT 4541743 YP_878007.1 CDS mraW NC_008593.1 1143042 1143971 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1143042..1143971 Clostridium novyi NT 4541515 YP_878008.1 CDS NT01CX_1935 NC_008593.1 1143999 1144499 D hypothetical protein 1143999..1144499 Clostridium novyi NT 4540141 YP_878009.1 CDS NT01CX_1936 NC_008593.1 1144515 1146719 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 1144515..1146719 Clostridium novyi NT 4541380 YP_878010.1 CDS murE NC_008593.1 1146784 1148235 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1146784..1148235 Clostridium novyi NT 4539847 YP_878011.1 CDS NT01CX_1938 NC_008593.1 1148236 1149609 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1148236..1149609 Clostridium novyi NT 4541782 YP_878012.1 CDS mraY NC_008593.1 1149623 1150600 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1149623..1150600 Clostridium novyi NT 4541236 YP_878013.1 CDS NT01CX_1940 NC_008593.1 1150625 1151734 D identified by match to protein family HMM PF01098; stage V sporulation protein E 1150625..1151734 Clostridium novyi NT 4540745 YP_878014.1 CDS NT01CX_1941 NC_008593.1 1151879 1152664 D identified by match to protein family HMM PF03799; cell division septal protein divIB/FtsQ 1151879..1152664 Clostridium novyi NT 4540746 YP_878015.1 CDS NT01CX_1942 NC_008593.1 1152676 1153434 D identified by match to protein family HMM PF05949; division initiation protein 1152676..1153434 Clostridium novyi NT 4541687 YP_878016.1 CDS NT01CX_1943 NC_008593.1 1153445 1153786 D identified by match to protein family HMM PF06947; small basic protein 1153445..1153786 Clostridium novyi NT 4539702 YP_878017.1 CDS NT01CX_1944 NC_008593.1 1153796 1154542 D identified by match to protein family HMM PF05949; division initiation protein 1153796..1154542 Clostridium novyi NT 4541803 YP_878018.1 CDS NT01CX_1945 NC_008593.1 1154584 1155255 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1154584..1155255 Clostridium novyi NT 4540198 YP_878019.1 CDS NT01CX_1946 NC_008593.1 1155258 1155719 D identified by match to protein family HMM PF04472; hypothetical protein 1155258..1155719 Clostridium novyi NT 4539959 YP_878020.1 CDS NT01CX_1947 NC_008593.1 1155745 1156530 D identified by match to protein family HMM PF01479; YlmH protein 1155745..1156530 Clostridium novyi NT 4541767 YP_878021.1 CDS NT01CX_1948 NC_008593.1 1156547 1157251 D identified by match to protein family HMM PF05103; cell division protein DivIVA 1156547..1157251 Clostridium novyi NT 4541006 YP_878022.1 CDS NT01CX_1949 NC_008593.1 1157387 1158079 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1157387..1158079 Clostridium novyi NT 4541327 YP_878023.1 CDS NT01CX_1950 NC_008593.1 1158173 1158793 D similar to YTEA B. subtilis; general stress protein, DnaK suppressor DskA 1158173..1158793 Clostridium novyi NT 4539937 YP_878024.1 CDS lspA NC_008593.1 1158833 1159279 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1158833..1159279 Clostridium novyi NT 4540107 YP_878025.1 CDS NT01CX_1952 NC_008593.1 1159279 1160193 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1159279..1160193 Clostridium novyi NT 4541734 YP_878026.1 CDS NT01CX_1953 NC_008593.1 1160196 1160732 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1160196..1160732 Clostridium novyi NT 4541935 YP_878027.1 CDS NT01CX_1954 NC_008593.1 1160799 1162532 R identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein complement(1160799..1162532) Clostridium novyi NT 4540755 YP_878028.1 CDS dapF NC_008593.1 1162638 1163462 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1162638..1163462 Clostridium novyi NT 4541243 YP_878029.1 CDS NT01CX_1956 NC_008593.1 1163582 1165129 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1163582..1165129 Clostridium novyi NT 4540920 YP_878030.1 CDS NT01CX_1957 NC_008593.1 1165116 1166306 D identified by match to protein family HMM PF00482; pilin biogenesis protein 1165116..1166306 Clostridium novyi NT 4539685 YP_878031.1 CDS NT01CX_1958 NC_008593.1 1166328 1166843 D hypothetical protein 1166328..1166843 Clostridium novyi NT 4541059 YP_878032.1 CDS NT01CX_1959 NC_008593.1 1166824 1167324 D prepilin peptidase 1166824..1167324 Clostridium novyi NT 4540384 YP_878033.1 CDS NT01CX_1960 NC_008593.1 1167325 1167801 D hypothetical protein 1167325..1167801 Clostridium novyi NT 4539944 YP_878034.1 CDS NT01CX_1961 NC_008593.1 1167803 1168270 D hypothetical protein 1167803..1168270 Clostridium novyi NT 4540315 YP_878035.1 CDS NT01CX_1962 NC_008593.1 1168234 1168674 D hypothetical protein 1168234..1168674 Clostridium novyi NT 4539890 YP_878036.1 CDS NT01CX_1963 NC_008593.1 1168734 1169426 D hypothetical protein 1168734..1169426 Clostridium novyi NT 4541697 YP_878037.1 CDS NT01CX_1964 NC_008593.1 1169430 1169906 D hypothetical protein 1169430..1169906 Clostridium novyi NT 4539668 YP_878038.1 CDS NT01CX_1965 NC_008593.1 1169899 1170315 D hypothetical protein 1169899..1170315 Clostridium novyi NT 4541538 YP_878039.1 CDS NT01CX_1966 NC_008593.1 1170516 1171073 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1170516..1171073 Clostridium novyi NT 4539858 YP_878040.1 CDS NT01CX_1967 NC_008593.1 1171097 1171468 D hypothetical protein 1171097..1171468 Clostridium novyi NT 4539728 YP_878041.1 CDS NT01CX_1968 NC_008593.1 1171572 1173011 R ISBma2, transposase complement(1171572..1173011) Clostridium novyi NT 4541749 YP_878042.1 CDS NT01CX_1969 NC_008593.1 1173281 1174177 D stage III sporulation protein AA 1173281..1174177 Clostridium novyi NT 4540656 YP_878043.1 CDS NT01CX_1970 NC_008593.1 1174179 1174700 D necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 1174179..1174700 Clostridium novyi NT 4541067 YP_878044.1 CDS NT01CX_1971 NC_008593.1 1174711 1174908 D identified by match to protein family HMM PF06686; stage III sporulation protein AC, SpoIIIAC -like protein 1174711..1174908 Clostridium novyi NT 4540231 YP_878045.1 CDS NT01CX_1972 NC_008593.1 1174918 1175301 D stage III sporulation protein AD 1174918..1175301 Clostridium novyi NT 4540443 YP_878046.1 CDS NT01CX_1973 NC_008593.1 1175325 1176488 D stage III sporulation protein AE 1175325..1176488 Clostridium novyi NT 4541998 YP_878047.1 CDS NT01CX_1974 NC_008593.1 1176499 1177083 D stage III sporulation protein AF 1176499..1177083 Clostridium novyi NT 4541799 YP_878048.1 CDS NT01CX_1975 NC_008593.1 1177115 1177747 D stage III sporulation protein AG 1177115..1177747 Clostridium novyi NT 4541811 YP_878049.1 CDS NT01CX_1976 NC_008593.1 1177813 1178325 D stage III sporulation protein AH 1177813..1178325 Clostridium novyi NT 4539949 YP_878050.1 CDS NT01CX_1977 NC_008593.1 1178409 1178813 D identified by match to protein family HMM PF03780; alkaline shock protein 1178409..1178813 Clostridium novyi NT 4539930 YP_878051.1 CDS nusB NC_008593.1 1178923 1179324 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1178923..1179324 Clostridium novyi NT 4541680 YP_878052.1 CDS NT01CX_1979 NC_008593.1 1179350 1180186 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1179350..1180186 Clostridium novyi NT 4539915 YP_878053.1 CDS xseA NC_008593.1 1180188 1181390 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1180188..1181390 Clostridium novyi NT 4541996 YP_878054.1 CDS xseB NC_008593.1 1181414 1181635 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1181414..1181635 Clostridium novyi NT 4539768 YP_878055.1 CDS NT01CX_1982 NC_008593.1 1181635 1182504 D identified by match to protein family HMM PF00348; geranyltranstransferase 1181635..1182504 Clostridium novyi NT 4540201 YP_878056.1 CDS NT01CX_1983 NC_008593.1 1182638 1184509 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1182638..1184509 Clostridium novyi NT 4540153 YP_878057.1 CDS NT01CX_1984 NC_008593.1 1184542 1185354 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1184542..1185354 Clostridium novyi NT 4540800 YP_878058.1 CDS NT01CX_1985 NC_008593.1 1185366 1186187 D identified by match to protein family HMM PF01513; ATP-NAD kinase 1185366..1186187 Clostridium novyi NT 4539732 YP_878059.1 CDS argR NC_008593.1 1186207 1186662 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1186207..1186662 Clostridium novyi NT 4541322 YP_878060.1 CDS recN NC_008593.1 1186673 1188367 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 1186673..1188367 Clostridium novyi NT 4541510 YP_878061.1 CDS NT01CX_1988 NC_008593.1 1188552 1189769 D identified by match to protein family HMM PF00595; match to protein family HMM PF05580; stage IV sporulation protein B 1188552..1189769 Clostridium novyi NT 4541760 YP_878062.1 CDS NT01CX_1989 NC_008593.1 1189949 1190761 D identified by match to protein family HMM PF00072; stage 0 sporulation protein A 1189949..1190761 Clostridium novyi NT 4539773 YP_878063.1 CDS NT01CX_1990 NC_008593.1 1191029 1191328 D hypothetical protein 1191029..1191328 Clostridium novyi NT 4541888 YP_878064.1 CDS NT01CX_1991 NC_008593.1 1191479 1191811 D Rhs family protein 1191479..1191811 Clostridium novyi NT 4541729 YP_878065.1 CDS NT01CX_1992 NC_008593.1 1192015 1192236 D hypothetical protein 1192015..1192236 Clostridium novyi NT 4541981 YP_878066.1 CDS NT01CX_1993 NC_008593.1 1192324 1192974 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase complement(1192324..1192974) Clostridium novyi NT 4540327 YP_878067.1 CDS NT01CX_1994 NC_008593.1 1193186 1194592 D amino acid permease 1193186..1194592 Clostridium novyi NT 4540044 YP_878068.1 CDS NT01CX_1995 NC_008593.1 1194754 1196421 R hypothetical protein complement(1194754..1196421) Clostridium novyi NT 4541869 YP_878069.1 CDS NT01CX_1996 NC_008593.1 1196422 1197207 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1196422..1197207) Clostridium novyi NT 4541214 YP_878070.1 CDS NT01CX_1997 NC_008593.1 1197382 1197774 D hypothetical protein 1197382..1197774 Clostridium novyi NT 4541074 YP_878071.1 CDS NT01CX_1998 NC_008593.1 1197426 1197869 R hypothetical protein complement(1197426..1197869) Clostridium novyi NT 4541906 YP_878072.1 CDS NT01CX_1999 NC_008593.1 1198661 1199437 D SAM-dependent methyltransferase 1198661..1199437 Clostridium novyi NT 4540810 YP_878073.1 CDS NT01CX_2000 NC_008593.1 1200045 1200572 D hypothetical protein 1200045..1200572 Clostridium novyi NT 4540504 YP_878074.1 CDS NT01CX_2001 NC_008593.1 1200599 1200700 D hypothetical protein 1200599..1200700 Clostridium novyi NT 4540624 YP_878075.1 CDS NT01CX_2002 NC_008593.1 1200752 1200901 D hypothetical protein 1200752..1200901 Clostridium novyi NT 4541010 YP_878076.1 CDS NT01CX_2003 NC_008593.1 1201103 1201285 D hypothetical protein 1201103..1201285 Clostridium novyi NT 4541065 YP_878077.1 CDS NT01CX_2004 NC_008593.1 1201344 1202021 D hypothetical protein 1201344..1202021 Clostridium novyi NT 4540403 YP_878078.1 CDS NT01CX_2005 NC_008593.1 1202252 1202815 D hypothetical protein 1202252..1202815 Clostridium novyi NT 4539951 YP_878079.1 CDS NT01CX_2006 NC_008593.1 1202963 1203532 D hypothetical protein 1202963..1203532 Clostridium novyi NT 4540266 YP_878080.1 CDS NT01CX_2007 NC_008593.1 1203617 1203817 D hypothetical protein 1203617..1203817 Clostridium novyi NT 4541818 YP_878081.1 CDS NT01CX_2008 NC_008593.1 1204007 1204531 D hypothetical protein 1204007..1204531 Clostridium novyi NT 4539645 YP_878082.1 CDS NT01CX_2009 NC_008593.1 1204621 1205064 D hypothetical protein 1204621..1205064 Clostridium novyi NT 4541241 YP_878083.1 CDS NT01CX_2010 NC_008593.1 1205117 1205608 D identified by match to protein family HMM PF00583; acetyltransferase 1205117..1205608 Clostridium novyi NT 4540832 YP_878084.1 CDS NT01CX_2011 NC_008593.1 1205628 1208522 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 1205628..1208522 Clostridium novyi NT 4541364 YP_878085.1 CDS NT01CX_2012 NC_008593.1 1208615 1209325 R hypothetical protein complement(1208615..1209325) Clostridium novyi NT 4541075 YP_878086.1 CDS NT01CX_2013 NC_008593.1 1209285 1210169 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1209285..1210169) Clostridium novyi NT 4539955 YP_878087.1 CDS NT01CX_2014 NC_008593.1 1210187 1211731 R hypothetical protein complement(1210187..1211731) Clostridium novyi NT 4539956 YP_878088.1 CDS NT01CX_2015 NC_008593.1 1212025 1213464 D ISBma2, transposase 1212025..1213464 Clostridium novyi NT 4541502 YP_878089.1 CDS NT01CX_2016 NC_008593.1 1213528 1213926 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1213528..1213926) Clostridium novyi NT 4541709 YP_878090.1 CDS NT01CX_2017 NC_008593.1 1214225 1214362 R hypothetical protein complement(1214225..1214362) Clostridium novyi NT 4540398 YP_878091.1 CDS NT01CX_2018 NC_008593.1 1214381 1214572 R hypothetical protein complement(1214381..1214572) Clostridium novyi NT 4541041 YP_878092.1 CDS NT01CX_2019 NC_008593.1 1214697 1214939 R hypothetical protein complement(1214697..1214939) Clostridium novyi NT 4541980 YP_878093.1 CDS NT01CX_2020 NC_008593.1 1215267 1215593 R hypothetical protein complement(1215267..1215593) Clostridium novyi NT 4540216 YP_878094.1 CDS NT01CX_2021 NC_008593.1 1215989 1216882 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV protein 1215989..1216882 Clostridium novyi NT 4541225 YP_878095.1 CDS NT01CX_2022 NC_008593.1 1217052 1217408 D hypothetical protein 1217052..1217408 Clostridium novyi NT 4541850 YP_878096.1 CDS NT01CX_2023 NC_008593.1 1217571 1218089 D identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1217571..1218089 Clostridium novyi NT 4541805 YP_878097.1 CDS NT01CX_2024 NC_008593.1 1218171 1218824 D sporulation factor spoIIM 1218171..1218824 Clostridium novyi NT 4540211 YP_878098.1 CDS xerD NC_008593.1 1219087 1219965 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 1219087..1219965 Clostridium novyi NT 4541332 YP_878099.1 CDS NT01CX_2026 NC_008593.1 1220078 1221256 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1220078..1221256 Clostridium novyi NT 4541287 YP_878100.1 CDS ilvD NC_008593.1 1221328 1222992 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1221328..1222992) Clostridium novyi NT 4541966 YP_878101.1 CDS ilvC NC_008593.1 1223640 1224635 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1223640..1224635 Clostridium novyi NT 4540058 YP_878102.1 CDS ilvB NC_008593.1 1224673 1226373 D identified by match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 1224673..1226373 Clostridium novyi NT 4540282 YP_878103.1 CDS ilvE NC_008593.1 1226393 1227307 D identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122; branched-chain amino acid aminotransferase 1226393..1227307 Clostridium novyi NT 4539595 YP_878104.1 CDS NT01CX_2031 NC_008593.1 1227407 1228591 D identified by match to protein family HMM PF01743; polyA polymerase family protein 1227407..1228591 Clostridium novyi NT 4541483 YP_878105.1 CDS scpA NC_008593.1 1228569 1229321 D functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 1228569..1229321 Clostridium novyi NT 4542004 YP_878106.1 CDS scpB NC_008593.1 1229308 1229880 D functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 1229308..1229880 Clostridium novyi NT 4539863 YP_878107.1 CDS NT01CX_2034 NC_008593.1 1229885 1230289 R hypothetical protein complement(1229885..1230289) Clostridium novyi NT 4540662 YP_878108.1 CDS NT01CX_2035 NC_008593.1 1230291 1230824 R hypothetical protein complement(1230291..1230824) Clostridium novyi NT 4540134 YP_878109.1 CDS NT01CX_2036 NC_008593.1 1231037 1232164 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1231037..1232164 Clostridium novyi NT 4541702 YP_878110.1 CDS NT01CX_2037 NC_008593.1 1232296 1232505 D hypothetical protein 1232296..1232505 Clostridium novyi NT 4541871 YP_878111.1 CDS NT01CX_2038 NC_008593.1 1232591 1234030 R ISBma2, transposase complement(1232591..1234030) Clostridium novyi NT 4540335 YP_878112.1 CDS NT01CX_2039 NC_008593.1 1234306 1235274 D identified by match to protein family HMM PF00480; glucokinase 1234306..1235274 Clostridium novyi NT 4539888 YP_878113.1 CDS NT01CX_2040 NC_008593.1 1235355 1235630 R hypothetical protein complement(1235355..1235630) Clostridium novyi NT 4541212 YP_878114.1 CDS NT01CX_2041 NC_008593.1 1235904 1236890 D hypothetical protein 1235904..1236890 Clostridium novyi NT 4540826 YP_878115.1 CDS gidA NC_008593.1 1236887 1238164 D identified by match to protein family HMM PF01134; hypothetical protein 1236887..1238164 Clostridium novyi NT 4541993 YP_878116.1 CDS NT01CX_2043 NC_008593.1 1239030 1239338 D Phage terminase small subunit 1239030..1239338 Clostridium novyi NT 4540057 YP_878117.1 CDS NT01CX_2044 NC_008593.1 1239331 1239561 D hypothetical protein 1239331..1239561 Clostridium novyi NT 4540833 YP_878118.1 CDS NT01CX_2045 NC_008593.1 1239592 1239891 D hypothetical protein 1239592..1239891 Clostridium novyi NT 4541289 YP_878119.1 CDS NT01CX_2046 NC_008593.1 1240315 1241559 D hypothetical protein 1240315..1241559 Clostridium novyi NT 4541127 YP_878120.1 CDS NT01CX_2047 NC_008593.1 1241903 1243234 D lipase 1241903..1243234 Clostridium novyi NT 4539629 YP_878121.1 CDS NT01CX_2048 NC_008593.1 1243413 1244723 D hypothetical protein 1243413..1244723 Clostridium novyi NT 4540128 YP_878122.1 CDS NT01CX_2049 NC_008593.1 1244800 1245303 R identified by match to protein family HMM PF00583; acetyltransferase complement(1244800..1245303) Clostridium novyi NT 4540667 YP_878123.1 CDS NT01CX_2050 NC_008593.1 1245472 1245846 D hypothetical protein 1245472..1245846 Clostridium novyi NT 4540558 YP_878124.1 CDS NT01CX_2051 NC_008593.1 1246009 1247184 D identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme 1246009..1247184 Clostridium novyi NT 4541965 YP_878125.1 CDS NT01CX_2052 NC_008593.1 1247187 1248026 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1247187..1248026 Clostridium novyi NT 4541846 YP_878126.1 CDS NT01CX_2053 NC_008593.1 1248050 1248595 D identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase, class I 1248050..1248595 Clostridium novyi NT 4540664 YP_878127.1 CDS NT01CX_2054 NC_008593.1 1249033 1250703 D identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic protein 1249033..1250703 Clostridium novyi NT 4541739 YP_878128.1 CDS NT01CX_2055 NC_008593.1 1250884 1252323 D ISBma2, transposase 1250884..1252323 Clostridium novyi NT 4541005 YP_878129.1 CDS NT01CX_2056 NC_008593.1 1252553 1253341 D hypothetical protein 1252553..1253341 Clostridium novyi NT 4539690 YP_878130.1 CDS NT01CX_2057 NC_008593.1 1253391 1253939 D hypothetical protein 1253391..1253939 Clostridium novyi NT 4539777 YP_878131.1 CDS NT01CX_2058 NC_008593.1 1254160 1255059 D hypothetical protein 1254160..1255059 Clostridium novyi NT 4541692 YP_878132.1 CDS NT01CX_2059 NC_008593.1 1255162 1255338 D hypothetical protein 1255162..1255338 Clostridium novyi NT 4539770 YP_878133.1 CDS NT01CX_2060 NC_008593.1 1255578 1256183 D identified by match to protein family HMM PF04647; agrB-like protein 1255578..1256183 Clostridium novyi NT 4540140 YP_878134.1 CDS NT01CX_2061 NC_008593.1 1256167 1256319 D hypothetical protein 1256167..1256319 Clostridium novyi NT 4539584 YP_878135.1 CDS NT01CX_2062 NC_008593.1 1256328 1257641 R accessory gene regulator protein C complement(1256328..1257641) Clostridium novyi NT 4539691 YP_878136.1 CDS NT01CX_2063 NC_008593.1 1257629 1258375 R identified by match to protein family HMM PF04397; response regulator BlpR complement(1257629..1258375) Clostridium novyi NT 4541052 YP_878137.1 CDS NT01CX_2064 NC_008593.1 1258567 1258659 D hypothetical protein 1258567..1258659 Clostridium novyi NT 4539640 YP_878138.1 CDS NT01CX_2065 NC_008593.1 1258761 1260062 D identified by match to protein family HMM PF00860; xanthine/uracil permease 1258761..1260062 Clostridium novyi NT 4540573 YP_878139.1 CDS NT01CX_2066 NC_008593.1 1260192 1260626 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1260192..1260626 Clostridium novyi NT 4540638 YP_878140.1 CDS NT01CX_2068 NC_008593.1 1260665 1261045 D hypothetical protein 1260665..1261045 Clostridium novyi NT 4541852 YP_878141.1 CDS NT01CX_2067 NC_008593.1 1260672 1260764 D hypothetical protein 1260672..1260764 Clostridium novyi NT 4541889 YP_878142.1 CDS NT01CX_2069 NC_008593.1 1261191 1262294 D hypothetical protein 1261191..1262294 Clostridium novyi NT 4541758 YP_878143.1 CDS NT01CX_2070 NC_008593.1 1262421 1263977 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1262421..1263977 Clostridium novyi NT 4541828 YP_878144.1 CDS tnaA NC_008593.1 1264147 1265526 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1264147..1265526 Clostridium novyi NT 4541080 YP_878145.1 CDS NT01CX_2072 NC_008593.1 1265878 1267236 D identified by match to protein family HMM PF00209; sodium-dependent amino acid transporter 1265878..1267236 Clostridium novyi NT 4540444 YP_878146.1 CDS NT01CX_2073 NC_008593.1 1267338 1268525 R identified by match to protein family HMM PF00375; serine/threonine sodium symporter complement(1267338..1268525) Clostridium novyi NT 4540441 YP_878147.1 CDS ilvA NC_008593.1 1269805 1270767 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127; threonine dehydratase 1269805..1270767 Clostridium novyi NT 4541134 YP_878148.1 CDS NT01CX_2075 NC_008593.1 1271201 1271539 D hypothetical protein 1271201..1271539 Clostridium novyi NT 4540338 YP_878149.1 CDS NT01CX_2076 NC_008593.1 1271665 1272306 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1271665..1272306 Clostridium novyi NT 4540109 YP_878150.1 CDS cobT NC_008593.1 1272657 1273724 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1272657..1273724 Clostridium novyi NT 4540047 YP_878151.1 CDS NT01CX_2078 NC_008593.1 1273730 1274290 D identified by match to protein family HMM PF02283; cobinamide kinase 1273730..1274290 Clostridium novyi NT 4541048 YP_878152.1 CDS cobS NC_008593.1 1274302 1275054 D identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317; cobalamin 5'-phosphate synthase 1274302..1275054 Clostridium novyi NT 4540333 YP_878153.1 CDS NT01CX_2080 NC_008593.1 1275051 1275650 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1275051..1275650 Clostridium novyi NT 4540151 YP_878154.1 CDS cobQ NC_008593.1 1275665 1277182 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1275665..1277182 Clostridium novyi NT 4540060 YP_878155.1 CDS cobD NC_008593.1 1277166 1278131 D identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 1277166..1278131 Clostridium novyi NT 4541377 YP_878156.1 CDS NT01CX_2083 NC_008593.1 1278128 1279189 D identified by match to protein family HMM PF00155; match to protein family HMM TIGR01140; L-threonine-O-3-phosphate decarboxylase 1278128..1279189 Clostridium novyi NT 4540836 YP_878157.1 CDS NT01CX_2084 NC_008593.1 1279253 1280212 D identified by match to protein family HMM PF01497; iron compound ABC transporter substrate-binding protein 1279253..1280212 Clostridium novyi NT 4540801 YP_878158.1 CDS NT01CX_2085 NC_008593.1 1280248 1281300 D identified by match to protein family HMM PF01032; iron (III) dicitrate transport system permease 1280248..1281300 Clostridium novyi NT 4541918 YP_878159.1 CDS NT01CX_2086 NC_008593.1 1281304 1282089 D identified by match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1281304..1282089 Clostridium novyi NT 4541813 YP_878160.1 CDS NT01CX_2087 NC_008593.1 1282208 1283041 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) 1282208..1283041 Clostridium novyi NT 4541505 YP_878161.1 CDS NT01CX_2088 NC_008593.1 1283068 1283931 D identified by match to protein family HMM PF00753; dihydropteroate synthase 1283068..1283931 Clostridium novyi NT 4541707 YP_878162.1 CDS NT01CX_2089 NC_008593.1 1284240 1284908 D hypothetical protein 1284240..1284908 Clostridium novyi NT 4541877 YP_878163.1 CDS NT01CX_2090 NC_008593.1 1285062 1286501 D ISBma2, transposase 1285062..1286501 Clostridium novyi NT 4539602 YP_878164.1 CDS NT01CX_2091 NC_008593.1 1286550 1287704 R identified by match to protein family HMM PF01170; nucleic acid methylase complement(1286550..1287704) Clostridium novyi NT 4541724 YP_878165.1 CDS NT01CX_2092 NC_008593.1 1287872 1288582 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1287872..1288582 Clostridium novyi NT 4540831 YP_878166.1 CDS NT01CX_2093 NC_008593.1 1288699 1289589 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; SIS domain-containing protein 1288699..1289589 Clostridium novyi NT 4540217 YP_878167.1 CDS NT01CX_2094 NC_008593.1 1289730 1290956 D identified by match to protein family HMM PF03486; NAD(FAD)-utilizing dehydrogenase 1289730..1290956 Clostridium novyi NT 4539924 YP_878168.1 CDS cmk NC_008593.1 1291041 1291700 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1291041..1291700 Clostridium novyi NT 4541859 YP_878169.1 CDS NT01CX_2096 NC_008593.1 1291713 1293617 D these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1291713..1293617 Clostridium novyi NT 4541946 YP_878170.1 CDS NT01CX_2097 NC_008593.1 1293751 1294620 D identified by match to protein family HMM PF00583; acetyltransferase 1293751..1294620 Clostridium novyi NT 4540375 YP_878171.1 CDS NT01CX_2098 NC_008593.1 1294666 1294836 R hypothetical protein complement(1294666..1294836) Clostridium novyi NT 4539708 YP_878172.1 CDS NT01CX_2099 NC_008593.1 1295021 1295992 D identified by match to protein family HMM PF01183; match to protein family HMM PF01471; glycosyl hydrolase family protein 1295021..1295992 Clostridium novyi NT 4541915 YP_878173.1 CDS NT01CX_2100 NC_008593.1 1296199 1296684 D flavodoxin 1296199..1296684 Clostridium novyi NT 4541532 YP_878174.1 CDS NT01CX_2101 NC_008593.1 1296785 1298329 D identified by match to protein family HMM PF01289; tetanolysin O 1296785..1298329 Clostridium novyi NT 4541938 YP_878175.1 CDS NT01CX_2102 NC_008593.1 1298550 1299257 D hypothetical protein 1298550..1299257 Clostridium novyi NT 4540308 YP_878176.1 CDS gltS NC_008593.1 1299327 1300535 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(1299327..1300535) Clostridium novyi NT 4540447 YP_878177.1 CDS miaB NC_008593.1 1300822 1302180 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1300822..1302180 Clostridium novyi NT 4540818 YP_878178.1 CDS mutS NC_008593.1 1302232 1304961 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1302232..1304961 Clostridium novyi NT 4540206 YP_878179.1 CDS mutL NC_008593.1 1304981 1306918 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1304981..1306918 Clostridium novyi NT 4541779 YP_878180.1 CDS miaA NC_008593.1 1306931 1307875 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1306931..1307875 Clostridium novyi NT 4539705 YP_878181.1 CDS NT01CX_2108 NC_008593.1 1307898 1308131 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; Hfq protein 1307898..1308131 Clostridium novyi NT 4541681 YP_878182.1 CDS NT01CX_2109 NC_008593.1 1308229 1310655 D identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; 5-methyltetrahydrofolate--homocysteine methyltransferase 1308229..1310655 Clostridium novyi NT 4540841 YP_878183.1 CDS NT01CX_2110 NC_008593.1 1310757 1312037 D identified by match to protein family HMM PF06838; aluminum resistance protein 1310757..1312037 Clostridium novyi NT 4540572 YP_878184.1 CDS lexA NC_008593.1 1312139 1312753 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1312139..1312753) Clostridium novyi NT 4540230 YP_878185.1 CDS NT01CX_2112 NC_008593.1 1312889 1313290 D hypothetical protein 1312889..1313290 Clostridium novyi NT 4541064 YP_878186.1 CDS NT01CX_2113 NC_008593.1 1313385 1314209 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; integrase/recombinase complement(1313385..1314209) Clostridium novyi NT 4539948 YP_878187.1 CDS NT01CX_2114 NC_008593.1 1314952 1316058 R identified by match to protein family HMM PF01168; amino acid racemase complement(1314952..1316058) Clostridium novyi NT 4540114 YP_878188.1 CDS NT01CX_2115 NC_008593.1 1316073 1317491 R identified by match to protein family HMM PF00324; amino acid transporter complement(1316073..1317491) Clostridium novyi NT 4540064 YP_878189.1 CDS lysA NC_008593.1 1317540 1318952 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(1317540..1318952) Clostridium novyi NT 4541085 YP_878190.1 CDS NT01CX_2117 NC_008593.1 1319049 1320770 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1319049..1320770) Clostridium novyi NT 4541290 YP_878191.1 CDS purB NC_008593.1 1321041 1322474 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1321041..1322474) Clostridium novyi NT 4540811 YP_878192.1 CDS NT01CX_2119 NC_008593.1 1322633 1322887 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein complement(1322633..1322887) Clostridium novyi NT 4540129 YP_878193.1 CDS NT01CX_2120 NC_008593.1 1322973 1323875 R identified by match to protein family HMM PF00155; aspartate transaminase complement(1322973..1323875) Clostridium novyi NT 4541860 YP_878194.1 CDS NT01CX_2121 NC_008593.1 1323844 1324167 R aspartate aminotransferase complement(1323844..1324167) Clostridium novyi NT 4541195 YP_878195.1 CDS NT01CX_2122 NC_008593.1 1324300 1325814 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(1324300..1325814) Clostridium novyi NT 4539919 YP_878196.1 CDS recA NC_008593.1 1326104 1327156 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1326104..1327156) Clostridium novyi NT 4539603 YP_878197.1 CDS pgsA NC_008593.1 1327307 1327849 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1327307..1327849) Clostridium novyi NT 4541838 YP_878198.1 CDS NT01CX_2125 NC_008593.1 1327833 1329167 R identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein complement(1327833..1329167) Clostridium novyi NT 4540749 YP_878199.1 CDS NT01CX_2126 NC_008593.1 1329260 1331605 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1329260..1331605) Clostridium novyi NT 4539717 YP_878200.1 CDS NT01CX_2127 NC_008593.1 1331695 1332396 R identified by match to protein family HMM PF00574; ATP-dependent Clp protease proteolytic subunit complement(1331695..1332396) Clostridium novyi NT 4539608 YP_878201.1 CDS NT01CX_2128 NC_008593.1 1332453 1333658 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I complement(1332453..1333658) Clostridium novyi NT 4539633 YP_878202.1 CDS NT01CX_2129 NC_008593.1 1333682 1333957 R similar to YLMC B. subtilis; identified by match to protein family HMM PF05239; hypothetical protein complement(1333682..1333957) Clostridium novyi NT 4541375 YP_878203.1 CDS NT01CX_2130 NC_008593.1 1334097 1336214 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM PF07650; polynucleotide phosphorylase/polyadenylase complement(1334097..1336214) Clostridium novyi NT 4540191 YP_878204.1 CDS rpsO NC_008593.1 1336327 1336590 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1336327..1336590) Clostridium novyi NT 4540423 YP_878205.1 CDS ribF NC_008593.1 1336737 1337663 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1336737..1337663) Clostridium novyi NT 4540805 YP_878206.1 CDS truB NC_008593.1 1337675 1338544 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1337675..1338544) Clostridium novyi NT 4541923 YP_878207.1 CDS NT01CX_2134 NC_008593.1 1338544 1339503 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; exopolyphosphatase complement(1338544..1339503) Clostridium novyi NT 4540516 YP_878208.1 CDS rbfA NC_008593.1 1339490 1339855 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1339490..1339855) Clostridium novyi NT 4540979 YP_878209.1 CDS infB NC_008593.1 1339869 1341920 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1339869..1341920) Clostridium novyi NT 4540115 YP_878210.1 CDS NT01CX_2137 NC_008593.1 1341946 1342209 R identified by match to protein family HMM PF04296; hypothetical protein complement(1341946..1342209) Clostridium novyi NT 4541788 YP_878211.1 CDS nusA NC_008593.1 1342239 1343285 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1342239..1343285) Clostridium novyi NT 4541810 YP_878212.1 CDS NT01CX_2139 NC_008593.1 1343298 1343762 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1343298..1343762) Clostridium novyi NT 4541676 YP_878213.1 CDS polC NC_008593.1 1344013 1348347 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC complement(1344013..1348347) Clostridium novyi NT 4540829 YP_878214.1 CDS ispG NC_008593.1 1348419 1349468 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1348419..1349468) Clostridium novyi NT 4541204 YP_878215.1 CDS NT01CX_2142 NC_008593.1 1349487 1350524 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(1349487..1350524) Clostridium novyi NT 4540306 YP_878216.1 CDS NT01CX_2143 NC_008593.1 1350554 1351711 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1350554..1351711) Clostridium novyi NT 4541878 YP_878217.1 CDS cdsA NC_008593.1 1351857 1352657 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(1351857..1352657) Clostridium novyi NT 4541733 YP_878218.1 CDS uppS NC_008593.1 1352668 1353426 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase complement(1352668..1353426) Clostridium novyi NT 4541879 YP_878219.1 CDS frr NC_008593.1 1353521 1354078 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1353521..1354078) Clostridium novyi NT 4541833 YP_878220.1 CDS pyrH NC_008593.1 1354095 1354805 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1354095..1354805) Clostridium novyi NT 4539589 YP_878221.1 CDS tsf NC_008593.1 1354922 1355842 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1354922..1355842) Clostridium novyi NT 4540136 YP_878222.1 CDS rpsB NC_008593.1 1355877 1356578 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1355877..1356578) Clostridium novyi NT 4539720 YP_878223.1 CDS NT01CX_2150 NC_008593.1 1356798 1357577 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(1356798..1357577) Clostridium novyi NT 4539723 YP_878224.1 CDS topA NC_008593.1 1357770 1359860 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1357770..1359860) Clostridium novyi NT 4540510 YP_878225.1 CDS NT01CX_2152 NC_008593.1 1359931 1361010 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA uptake protein complement(1359931..1361010) Clostridium novyi NT 4541500 YP_878226.1 CDS NT01CX_2153 NC_008593.1 1361029 1361400 R Mg chelatase-like protein complement(1361029..1361400) Clostridium novyi NT 4539958 YP_878227.1 CDS NT01CX_2154 NC_008593.1 1361826 1361972 D repressor protein (phage related) 1361826..1361972 Clostridium novyi NT 4540642 YP_878228.1 CDS NT01CX_2155 NC_008593.1 1362218 1364575 R hypothetical protein complement(1362218..1364575) Clostridium novyi NT 4540133 YP_878229.1 CDS NT01CX_2156 NC_008593.1 1364588 1365676 R identified by match to protein family HMM PF00004; ATPase AAA complement(1364588..1365676) Clostridium novyi NT 4541089 YP_878230.1 CDS NT01CX_2157 NC_008593.1 1365917 1367212 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase complement(1365917..1367212) Clostridium novyi NT 4541827 YP_878231.1 CDS NT01CX_2158 NC_008593.1 1367251 1367511 R hypothetical protein complement(1367251..1367511) Clostridium novyi NT 4541725 YP_878232.1 CDS NT01CX_2159 NC_008593.1 1367575 1369386 R identified by match to protein family HMM TIGR01665; Phage endopeptidase complement(1367575..1369386) Clostridium novyi NT 4540278 YP_878233.1 CDS NT01CX_2160 NC_008593.1 1369470 1369604 R Gp17 protein-like protein complement(1369470..1369604) Clostridium novyi NT 4540332 YP_878234.1 CDS NT01CX_2161 NC_008593.1 1369597 1369932 R hypothetical protein complement(1369597..1369932) Clostridium novyi NT 4539734 YP_878235.1 CDS NT01CX_2162 NC_008593.1 1369943 1371787 R phage pre-neck appendage-like protein complement(1369943..1371787) Clostridium novyi NT 4539936 YP_878236.1 CDS NT01CX_2163 NC_008593.1 1371778 1372461 R identified by match to protein family HMM TIGR01633; hypothetical protein complement(1371778..1372461) Clostridium novyi NT 4540234 YP_878237.1 CDS NT01CX_2164 NC_008593.1 1372464 1375013 R identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760; TP901 family phage tail tape measure protein complement(1372464..1375013) Clostridium novyi NT 4541213 YP_878238.1 CDS NT01CX_2165 NC_008593.1 1375026 1375253 R peptide methionine sulfoxide reductase domain-containing protein complement(1375026..1375253) Clostridium novyi NT 4540383 YP_878239.1 CDS NT01CX_2166 NC_008593.1 1375319 1375696 R hypothetical protein complement(1375319..1375696) Clostridium novyi NT 4539855 YP_878240.1 CDS NT01CX_2167 NC_008593.1 1375713 1375970 R hypothetical protein complement(1375713..1375970) Clostridium novyi NT 4542002 YP_878241.1 CDS NT01CX_2168 NC_008593.1 1376020 1376649 R hypothetical protein complement(1376020..1376649) Clostridium novyi NT 4541992 YP_878242.1 CDS NT01CX_2169 NC_008593.1 1376651 1377019 R hypothetical protein complement(1376651..1377019) Clostridium novyi NT 4541542 YP_878243.1 CDS NT01CX_2170 NC_008593.1 1377024 1377422 R hypothetical protein complement(1377024..1377422) Clostridium novyi NT 4541326 YP_878244.1 CDS NT01CX_2171 NC_008593.1 1377415 1377744 R identified by match to protein family HMM TIGR01563; phage head-tail adaptor complement(1377415..1377744) Clostridium novyi NT 4541047 YP_878245.1 CDS NT01CX_2172 NC_008593.1 1377744 1378298 R hypothetical protein complement(1377744..1378298) Clostridium novyi NT 4540794 YP_878246.1 CDS NT01CX_2173 NC_008593.1 1378344 1379036 R hypothetical protein complement(1378344..1379036) Clostridium novyi NT 4541497 YP_878247.1 CDS NT01CX_2174 NC_008593.1 1379197 1379793 R scaffold protein complement(1379197..1379793) Clostridium novyi NT 4541685 YP_878248.1 CDS NT01CX_2175 NC_008593.1 1379911 1380420 R hypothetical protein complement(1379911..1380420) Clostridium novyi NT 4541897 YP_878249.1 CDS NT01CX_2176 NC_008593.1 1380512 1380736 R hypothetical protein complement(1380512..1380736) Clostridium novyi NT 4541770 YP_878250.1 CDS NT01CX_2177 NC_008593.1 1380741 1382012 R identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; minor head protein complement(1380741..1382012) Clostridium novyi NT 4540401 YP_878251.1 CDS NT01CX_2178 NC_008593.1 1381999 1383462 R identified by match to protein family HMM PF05133; Phage portal protein, SPP1 Gp6-like complement(1381999..1383462) Clostridium novyi NT 4540665 YP_878252.1 CDS NT01CX_2179 NC_008593.1 1383466 1384725 R identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; PBSX family phage terminase large subunit complement(1383466..1384725) Clostridium novyi NT 4541824 YP_878253.1 CDS NT01CX_2180 NC_008593.1 1384718 1385179 R identified by match to protein family HMM PF03592; phage terminase family protein complement(1384718..1385179) Clostridium novyi NT 4540973 YP_878254.1 CDS NT01CX_2181 NC_008593.1 1385874 1386314 R RNA polymerase sigma factor complement(1385874..1386314) Clostridium novyi NT 4541861 YP_878255.1 CDS NT01CX_2182 NC_008593.1 1386393 1387205 R identified by match to protein family HMM PF02810; SecC motif-containing protein complement(1386393..1387205) Clostridium novyi NT 4539701 YP_878256.1 CDS NT01CX_2183 NC_008593.1 1387216 1387737 R hypothetical protein complement(1387216..1387737) Clostridium novyi NT 4540867 YP_878257.1 CDS NT01CX_2184 NC_008593.1 1388042 1388191 R hypothetical protein complement(1388042..1388191) Clostridium novyi NT 4541472 YP_878258.1 CDS NT01CX_2185 NC_008593.1 1388284 1389048 R hypothetical protein complement(1388284..1389048) Clostridium novyi NT 4540142 YP_878259.1 CDS NT01CX_2186 NC_008593.1 1389051 1389602 R hypothetical protein complement(1389051..1389602) Clostridium novyi NT 4539688 YP_878260.1 CDS NT01CX_2187 NC_008593.1 1389679 1389876 R hypothetical protein complement(1389679..1389876) Clostridium novyi NT 4541880 YP_878261.1 CDS NT01CX_2188 NC_008593.1 1389892 1389999 R hypothetical protein complement(1389892..1389999) Clostridium novyi NT 4539738 YP_878262.1 CDS NT01CX_2189 NC_008593.1 1390031 1390219 R hypothetical protein complement(1390031..1390219) Clostridium novyi NT 4540614 YP_878263.1 CDS NT01CX_2190 NC_008593.1 1390226 1391128 R phage protein complement(1390226..1391128) Clostridium novyi NT 4540167 YP_878264.1 CDS NT01CX_2191 NC_008593.1 1391138 1391329 R hypothetical protein complement(1391138..1391329) Clostridium novyi NT 4539967 YP_878265.1 CDS NT01CX_2192 NC_008593.1 1391340 1391936 R identified by match to protein family HMM PF04404; essential recombination function protein complement(1391340..1391936) Clostridium novyi NT 4540380 YP_878266.1 CDS NT01CX_2193 NC_008593.1 1391948 1392481 R hypothetical protein complement(1391948..1392481) Clostridium novyi NT 4540320 YP_878267.1 CDS NT01CX_2194 NC_008593.1 1392529 1392810 R hypothetical protein complement(1392529..1392810) Clostridium novyi NT 4540570 YP_878268.1 CDS NT01CX_2195 NC_008593.1 1392825 1393016 R hypothetical protein complement(1392825..1393016) Clostridium novyi NT 4540240 YP_878269.1 CDS NT01CX_2196 NC_008593.1 1393029 1393184 R hypothetical protein complement(1393029..1393184) Clostridium novyi NT 4541939 YP_878270.1 CDS NT01CX_2197 NC_008593.1 1393200 1393916 R antirepressor complement(1393200..1393916) Clostridium novyi NT 4541976 YP_878271.1 CDS NT01CX_2198 NC_008593.1 1394025 1394162 R hypothetical protein complement(1394025..1394162) Clostridium novyi NT 4540102 YP_878272.1 CDS NT01CX_2199 NC_008593.1 1394174 1394962 R identified by match to protein family HMM PF03374; phage anti-repressor complement(1394174..1394962) Clostridium novyi NT 4540752 YP_878273.1 CDS NT01CX_2200 NC_008593.1 1394959 1395174 R identified by match to protein family HMM PF01381; transcriptional regulator complement(1394959..1395174) Clostridium novyi NT 4540809 YP_878274.1 CDS NT01CX_2201 NC_008593.1 1395378 1395719 D identified by match to protein family HMM PF01381; transcriptional regulator 1395378..1395719 Clostridium novyi NT 4541829 YP_878275.1 CDS NT01CX_2202 NC_008593.1 1395703 1396785 D hypothetical protein 1395703..1396785 Clostridium novyi NT 4539729 YP_878276.1 CDS NT01CX_2203 NC_008593.1 1396966 1398561 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; DNA recombinase 1396966..1398561 Clostridium novyi NT 4540636 YP_878277.1 CDS NT01CX_2204 NC_008593.1 1398533 1399576 R identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein complement(1398533..1399576) Clostridium novyi NT 4540131 YP_878278.1 CDS NT01CX_2205 NC_008593.1 1399772 1400134 D identified by match to protein family HMM PF02021; hypothetical protein 1399772..1400134 Clostridium novyi NT 4539950 YP_878279.1 CDS rnhB NC_008593.1 1400194 1401003 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1400194..1401003) Clostridium novyi NT 4541251 YP_878280.1 CDS rbgA NC_008593.1 1401009 1401851 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1401009..1401851) Clostridium novyi NT 4539655 YP_878281.1 CDS rplS NC_008593.1 1401930 1402280 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1401930..1402280) Clostridium novyi NT 4540630 YP_878282.1 CDS trmD NC_008593.1 1402435 1403160 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1402435..1403160) Clostridium novyi NT 4541727 YP_878283.1 CDS rimM NC_008593.1 1403151 1403639 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1403151..1403639) Clostridium novyi NT 4540242 YP_878284.1 CDS NT01CX_2211 NC_008593.1 1403722 1403949 R hypothetical protein complement(1403722..1403949) Clostridium novyi NT 4541857 YP_878285.1 CDS rpsP NC_008593.1 1403969 1404226 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1403969..1404226) Clostridium novyi NT 4540311 YP_878286.1 CDS NT01CX_2213 NC_008593.1 1404254 1405609 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(1404254..1405609) Clostridium novyi NT 4540376 YP_878287.1 CDS NT01CX_2214 NC_008593.1 1405620 1405967 R identified by match to protein family HMM PF04297; DNA-binding protein complement(1405620..1405967) Clostridium novyi NT 4541898 YP_878288.1 CDS ftsY NC_008593.1 1406047 1406955 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(1406047..1406955) Clostridium novyi NT 4541276 YP_878289.1 CDS NT01CX_2216 NC_008593.1 1406987 1410544 R identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC complement(1406987..1410544) Clostridium novyi NT 4541086 YP_878290.1 CDS NT01CX_2217 NC_008593.1 1410740 1411000 R identified by match to protein family HMM PF04232; stage V sporulation protein S complement(1410740..1411000) Clostridium novyi NT 4539672 YP_878291.1 CDS NT01CX_2218 NC_008593.1 1411075 1412154 R identified by match to protein family HMM PF04055; bioB/LipA-like protein complement(1411075..1412154) Clostridium novyi NT 4541139 YP_878292.1 CDS rnc NC_008593.1 1412141 1412854 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1412141..1412854) Clostridium novyi NT 4541237 YP_878293.1 CDS acpP NC_008593.1 1412921 1413154 R identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517; acyl carrier protein complement(1412921..1413154) Clostridium novyi NT 4540098 YP_878294.1 CDS plsX NC_008593.1 1413233 1414231 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1413233..1414231) Clostridium novyi NT 4541653 YP_878295.1 CDS rpmF NC_008593.1 1414305 1414487 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1414305..1414487) Clostridium novyi NT 4541371 YP_878296.1 CDS NT01CX_2223 NC_008593.1 1414502 1415002 R COG1399; identified by match to protein family HMM PF02620; hypothetical protein complement(1414502..1415002) Clostridium novyi NT 4541903 YP_878297.1 CDS ackA NC_008593.1 1415120 1416325 R identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase complement(1415120..1416325) Clostridium novyi NT 4541780 YP_878298.1 CDS eutD NC_008593.1 1416375 1417373 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(1416375..1417373) Clostridium novyi NT 4540118 YP_878299.1 CDS NT01CX_2226 NC_008593.1 1417636 1418838 D identified by match to protein family HMM PF05636; hypothetical protein 1417636..1418838 Clostridium novyi NT 4541234 YP_878300.1 CDS NT01CX_2227 NC_008593.1 1418905 1419177 R hypothetical protein complement(1418905..1419177) Clostridium novyi NT 4541688 YP_878301.1 CDS NT01CX_2228 NC_008593.1 1418909 1420114 D identified by match to protein family HMM PF07670; membrane protein 1418909..1420114 Clostridium novyi NT 4541795 YP_878302.1 CDS NT01CX_2229 NC_008593.1 1420094 1420621 R hypothetical protein complement(1420094..1420621) Clostridium novyi NT 4539626 YP_878303.1 CDS coaD NC_008593.1 1420630 1421115 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(1420630..1421115) Clostridium novyi NT 4540922 YP_878304.1 CDS NT01CX_2231 NC_008593.1 1421117 1421674 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase complement(1421117..1421674) Clostridium novyi NT 4540457 YP_878305.1 CDS recG NC_008593.1 1421776 1423797 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643; ATP-dependent DNA helicase RecG complement(1421776..1423797) Clostridium novyi NT 4541330 YP_878306.1 CDS NT01CX_2233 NC_008593.1 1423926 1425590 R identified by match to protein family HMM PF02734; degV protein complement(1423926..1425590) Clostridium novyi NT 4541135 YP_878307.1 CDS NT01CX_2234 NC_008593.1 1425604 1425951 R identified by match to protein family HMM PF03780; alkaline shock protein complement(1425604..1425951) Clostridium novyi NT 4541745 YP_878308.1 CDS rpmB NC_008593.1 1426150 1426341 D required for 70S ribosome assembly; 50S ribosomal protein L28 1426150..1426341 Clostridium novyi NT 4541493 YP_878309.1 CDS NT01CX_2236 NC_008593.1 1426586 1427221 R identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase complement(1426586..1427221) Clostridium novyi NT 4540337 YP_878310.1 CDS NT01CX_2237 NC_008593.1 1427223 1427873 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(1427223..1427873) Clostridium novyi NT 4541991 YP_878311.1 CDS NT01CX_2238 NC_008593.1 1427867 1428739 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1427867..1428739) Clostridium novyi NT 4540557 YP_878312.1 CDS NT01CX_2239 NC_008593.1 1428760 1430688 R identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase complement(1428760..1430688) Clostridium novyi NT 4540974 YP_878313.1 CDS NT01CX_2240 NC_008593.1 1430685 1431437 R identified by match to protein family HMM PF00481; PP2C phosphatase family protein complement(1430685..1431437) Clostridium novyi NT 4541949 YP_878314.1 CDS NT01CX_2241 NC_008593.1 1431469 1432500 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(1431469..1432500) Clostridium novyi NT 4539694 YP_878315.1 CDS NT01CX_2242 NC_008593.1 1432509 1433840 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein complement(1432509..1433840) Clostridium novyi NT 4539787 YP_878316.1 CDS NT01CX_2243 NC_008593.1 1433869 1434549 R identified by match to protein family HMM PF04298; hypothetical protein complement(1433869..1434549) Clostridium novyi NT 4541479 YP_878317.1 CDS fmt NC_008593.1 1434579 1435508 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1434579..1435508) Clostridium novyi NT 4541856 YP_878318.1 CDS def NC_008593.1 1435513 1435965 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1435513..1435965) Clostridium novyi NT 4540324 YP_878319.1 CDS NT01CX_2246 NC_008593.1 1435998 1438199 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1435998..1438199) Clostridium novyi NT 4539664 YP_878320.1 CDS NT01CX_2247 NC_008593.1 1438252 1439442 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(1438252..1439442) Clostridium novyi NT 4541914 YP_878321.1 CDS rpoZ NC_008593.1 1439444 1439665 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1439444..1439665) Clostridium novyi NT 4541840 YP_878322.1 CDS gmk NC_008593.1 1439646 1440287 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1439646..1440287) Clostridium novyi NT 4540439 YP_878323.1 CDS NT01CX_2250 NC_008593.1 1440287 1440559 R identified by match to protein family HMM PF04025; hypothetical protein complement(1440287..1440559) Clostridium novyi NT 4539683 YP_878324.1 CDS NT01CX_2251 NC_008593.1 1440577 1441458 R identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein complement(1440577..1441458) Clostridium novyi NT 4541140 YP_878325.1 CDS NT01CX_2252 NC_008593.1 1441686 1443053 R identified by match to protein family HMM PF00860; xanthine/uracil permease family protein complement(1441686..1443053) Clostridium novyi NT 4540569 YP_878326.1 CDS NT01CX_2253 NC_008593.1 1443375 1444853 R stage IV sporulation protein A complement(1443375..1444853) Clostridium novyi NT 4539764 YP_878327.1 CDS engA NC_008593.1 1445100 1446416 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1445100..1446416) Clostridium novyi NT 4540199 YP_878328.1 CDS NT01CX_2255 NC_008593.1 1446419 1447759 R identified by match to protein family HMM PF04459; Fe-S oxidoreductase complement(1446419..1447759) Clostridium novyi NT 4540318 YP_878329.1 CDS NT01CX_2256 NC_008593.1 1447877 1448596 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(1447877..1448596) Clostridium novyi NT 4541886 YP_878330.1 CDS nrdR NC_008593.1 1448704 1449180 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator complement(1448704..1449180) Clostridium novyi NT 4540830 YP_878331.1 CDS NT01CX_2258 NC_008593.1 1449244 1449501 R identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein complement(1449244..1449501) Clostridium novyi NT 4540147 YP_878332.1 CDS NT01CX_2259 NC_008593.1 1449724 1451463 D identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; hydrogenase 1449724..1451463 Clostridium novyi NT 4539957 YP_878333.1 CDS NT01CX_2260 NC_008593.1 1451646 1452809 D identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein 1451646..1452809 Clostridium novyi NT 4540910 YP_878334.1 CDS NT01CX_2261 NC_008593.1 1452865 1453635 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(1452865..1453635) Clostridium novyi NT 4541757 YP_878335.2 CDS NT01CX_2262 NC_008593.1 1453709 1454416 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(1453709..1454416) Clostridium novyi NT 4541366 YP_878336.1 CDS NT01CX_2263 NC_008593.1 1454431 1455225 R identified by match to protein family HMM PF03419; sporulation factor SpoIIGA complement(1454431..1455225) Clostridium novyi NT 4540280 YP_878337.1 CDS ftsZ NC_008593.1 1455380 1456564 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1455380..1456564) Clostridium novyi NT 4540392 YP_878338.1 CDS ftsA NC_008593.1 1456580 1457833 R identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(1456580..1457833) Clostridium novyi NT 4540272 YP_878339.1 CDS NT01CX_2266 NC_008593.1 1458087 1459142 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; pili retraction protein, pilT complement(1458087..1459142) Clostridium novyi NT 4540056 YP_878340.1 CDS NT01CX_2267 NC_008593.1 1459253 1459930 R sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK complement(1459253..1459930) Clostridium novyi NT 4541995 YP_878341.1 CDS NT01CX_2268 NC_008593.1 1460024 1461709 R identified by match to protein family HMM PF00905; penicillin-binding protein 2 complement(1460024..1461709) Clostridium novyi NT 4541847 YP_878342.1 CDS NT01CX_2269 NC_008593.1 1461771 1462397 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1461771..1462397) Clostridium novyi NT 4541853 YP_878343.1 CDS NT01CX_2270 NC_008593.1 1462401 1463627 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1462401..1463627) Clostridium novyi NT 4540119 YP_878344.1 CDS NT01CX_2271 NC_008593.1 1463620 1464276 R identified by match to protein family HMM PF01596; O-methyltransferase family complement(1463620..1464276) Clostridium novyi NT 4541983 YP_878345.1 CDS NT01CX_2272 NC_008593.1 1464307 1465317 R identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(1464307..1465317) Clostridium novyi NT 4541488 YP_878346.1 CDS typA NC_008593.1 1465359 1467179 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(1465359..1467179) Clostridium novyi NT 4540751 YP_878347.1 CDS NT01CX_2274 NC_008593.1 1467321 1467665 R identified by match to protein family HMM PF06133; hypothetical protein complement(1467321..1467665) Clostridium novyi NT 4539920 YP_878348.1 CDS NT01CX_2275 NC_008593.1 1467690 1469357 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily hydrolase complement(1467690..1469357) Clostridium novyi NT 4539856 YP_878349.1 CDS NT01CX_2276 NC_008593.1 1469396 1469848 R identified by match to protein family HMM PF01475; ferric uptake regulation protein complement(1469396..1469848) Clostridium novyi NT 4540655 YP_878350.1 CDS NT01CX_2277 NC_008593.1 1470002 1470262 R identified by match to protein family HMM PF06949; hypothetical protein complement(1470002..1470262) Clostridium novyi NT 4539780 YP_878351.1 CDS NT01CX_2278 NC_008593.1 1470286 1470693 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1470286..1470693) Clostridium novyi NT 4539725 YP_878352.1 CDS NT01CX_2279 NC_008593.1 1470751 1471005 R hypothetical protein complement(1470751..1471005) Clostridium novyi NT 4540618 YP_878353.1 CDS alaS NC_008593.1 1471092 1473731 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1471092..1473731) Clostridium novyi NT 4539587 YP_878354.1 CDS trmU NC_008593.1 1474145 1475197 R identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(1474145..1475197) Clostridium novyi NT 4539781 YP_878355.1 CDS NT01CX_2282 NC_008593.1 1475210 1475638 R identified by match to protein family HMM PF01592; NifU protein complement(1475210..1475638) Clostridium novyi NT 4541875 YP_878356.1 CDS NT01CX_2283 NC_008593.1 1475641 1476831 R identified by match to protein family HMM PF00266; cysteine desulfurase complement(1475641..1476831) Clostridium novyi NT 4541776 YP_878357.1 CDS NT01CX_2284 NC_008593.1 1476824 1477258 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; iron-sulfur cluster assembly transcription factor IscR complement(1476824..1477258) Clostridium novyi NT 4541258 YP_878358.1 CDS NT01CX_2285 NC_008593.1 1477341 1478600 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(1477341..1478600) Clostridium novyi NT 4540105 YP_878359.1 CDS NT01CX_2286 NC_008593.1 1478741 1479973 R identified by match to protein family HMM PF00563; EAL domain-containing protein complement(1478741..1479973) Clostridium novyi NT 4540583 YP_878360.1 CDS NT01CX_2287 NC_008593.1 1480077 1480739 R identified by match to protein family HMM PF00753; zinc-dependent hydrolase complement(1480077..1480739) Clostridium novyi NT 4541933 YP_878361.1 CDS NT01CX_2288 NC_008593.1 1480758 1482665 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1480758..1482665) Clostridium novyi NT 4540816 YP_878362.1 CDS traI NC_008593.1 1482727 1484982 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase III complement(1482727..1484982) Clostridium novyi NT 4541142 YP_878363.1 CDS truA NC_008593.1 1485081 1485818 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1485081..1485818 Clostridium novyi NT 4540747 YP_878364.1 CDS NT01CX_2291 NC_008593.1 1485954 1487483 R identified by match to protein family HMM PF00015; chemotaxis sensory transducer protein complement(1485954..1487483) Clostridium novyi NT 4541198 YP_878365.1 CDS NT01CX_2292 NC_008593.1 1487498 1488523 R 3-oxoacyl-(acyl-carrier-protein) synthase III complement(1487498..1488523) Clostridium novyi NT 4541035 YP_878366.1 CDS NT01CX_2293 NC_008593.1 1488754 1488996 R identified by match to protein family HMM PF01541; endo/excinuclease domain-containing protein complement(1488754..1488996) Clostridium novyi NT 4541748 YP_878367.1 CDS NT01CX_2294 NC_008593.1 1489007 1489411 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1489007..1489411) Clostridium novyi NT 4541250 YP_878368.1 CDS NT01CX_2295 NC_008593.1 1490122 1490328 R identified by match to protein family HMM PF01381; Cro/CI family transcription regulator complement(1490122..1490328) Clostridium novyi NT 4541088 YP_878369.1 CDS NT01CX_2296 NC_008593.1 1490345 1490839 R hypothetical protein complement(1490345..1490839) Clostridium novyi NT 4540309 YP_878370.1 CDS NT01CX_2297 NC_008593.1 1490891 1492339 R hypothetical protein complement(1490891..1492339) Clostridium novyi NT 4540387 YP_878371.1 CDS NT01CX_2298 NC_008593.1 1492548 1492886 R identified by match to protein family HMM PF03960; arsenate reductase complement(1492548..1492886) Clostridium novyi NT 4541636 YP_878372.1 CDS NT01CX_2299 NC_008593.1 1493114 1493956 D identified by match to protein family HMM PF00892; integral membrane protein 1493114..1493956 Clostridium novyi NT 4540515 YP_878373.1 CDS mscL NC_008593.1 1494018 1494434 R identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein complement(1494018..1494434) Clostridium novyi NT 4540798 YP_878374.1 CDS clpB NC_008593.1 1494554 1497154 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; clpB protein complement(1494554..1497154) Clostridium novyi NT 4541793 YP_878375.1 CDS NT01CX_2302 NC_008593.1 1497297 1499735 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase complement(1497297..1499735) Clostridium novyi NT 4540799 YP_878376.1 CDS NT01CX_2303 NC_008593.1 1499838 1500608 R identified by match to protein family HMM PF00520; potassium transporter complement(1499838..1500608) Clostridium novyi NT 4541790 YP_878377.1 CDS NT01CX_2304 NC_008593.1 1500766 1501098 R thioredoxin complement(1500766..1501098) Clostridium novyi NT 4540196 YP_878378.1 CDS NT01CX_2305 NC_008593.1 1501129 1501815 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(1501129..1501815) Clostridium novyi NT 4540985 YP_878379.1 CDS NT01CX_2306 NC_008593.1 1502117 1502719 D hypothetical protein 1502117..1502719 Clostridium novyi NT 4540123 YP_878380.1 CDS NT01CX_2307 NC_008593.1 1502759 1504879 R identified by match to protein family HMM PF02421; match to protein family HMM PF07670; ferrous iron transport protein B complement(1502759..1504879) Clostridium novyi NT 4541925 YP_878381.1 CDS NT01CX_2308 NC_008593.1 1504908 1505156 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(1504908..1505156) Clostridium novyi NT 4540863 YP_878382.1 CDS NT01CX_2309 NC_008593.1 1505364 1505783 D identified by match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent transcriptional repressor 1505364..1505783 Clostridium novyi NT 4541652 YP_878383.1 CDS NT01CX_2310 NC_008593.1 1505851 1507389 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein complement(1505851..1507389) Clostridium novyi NT 4541839 YP_878384.1 CDS murG NC_008593.1 1507558 1508631 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1507558..1508631) Clostridium novyi NT 4539588 YP_878385.1 CDS NT01CX_2312 NC_008593.1 1508887 1509084 D identified by match to protein family HMM PF00269; small acid-soluble spore protein -like protein 1508887..1509084 Clostridium novyi NT 4540585 YP_878386.1 CDS NT01CX_2313 NC_008593.1 1509192 1510532 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1509192..1510532) Clostridium novyi NT 4540976 YP_878387.1 CDS NT01CX_2314 NC_008593.1 1510738 1510929 D identified by match to protein family HMM PF00269; small acid-soluble spore protein-like protein 1510738..1510929 Clostridium novyi NT 4540824 YP_878388.1 CDS NT01CX_2315 NC_008593.1 1511005 1512966 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory transduction histidine kinase complement(1511005..1512966) Clostridium novyi NT 4539881 YP_878389.1 CDS recJ NC_008593.1 1513107 1514873 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(1513107..1514873) Clostridium novyi NT 4540564 YP_878390.1 CDS NT01CX_2317 NC_008593.1 1514953 1515771 D identified by match to protein family HMM PF01261; endonuclease IV 1514953..1515771 Clostridium novyi NT 4540857 YP_878391.1 CDS NT01CX_2318 NC_008593.1 1515808 1516413 D identified by match to protein family HMM PF01613; flavin reductase domain-containing protein 1515808..1516413 Clostridium novyi NT 4541034 YP_878392.1 CDS NT01CX_2319 NC_008593.1 1516508 1516720 R identified by match to protein family HMM PF00403; copper ion binding protein complement(1516508..1516720) Clostridium novyi NT 4540340 YP_878393.1 CDS NT01CX_2320 NC_008593.1 1516759 1519206 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1516759..1519206) Clostridium novyi NT 4541217 YP_878394.1 CDS NT01CX_2321 NC_008593.1 1519348 1520565 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; zinc protease complement(1519348..1520565) Clostridium novyi NT 4540374 YP_878395.1 CDS etfA NC_008593.1 1520721 1521728 R identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha complement(1520721..1521728) Clostridium novyi NT 4541253 YP_878396.1 CDS NT01CX_2323 NC_008593.1 1521759 1522538 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(1521759..1522538) Clostridium novyi NT 4540760 YP_878397.1 CDS NT01CX_2324 NC_008593.1 1522566 1523705 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; (3-hydroxy)butyryl-CoA dehydrogenase complement(1522566..1523705) Clostridium novyi NT 4540628 YP_878398.1 CDS NT01CX_2325 NC_008593.1 1523955 1526867 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1523955..1526867) Clostridium novyi NT 4539616 YP_878399.1 CDS NT01CX_2326 NC_008593.1 1526907 1528865 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1526907..1528865) Clostridium novyi NT 4539669 YP_878400.1 CDS NT01CX_2327 NC_008593.1 1529060 1529443 R hypothetical protein complement(1529060..1529443) Clostridium novyi NT 4541637 YP_878401.1 CDS NT01CX_2328 NC_008593.1 1529518 1530456 R identified by match to protein family HMM PF00515; hypothetical protein complement(1529518..1530456) Clostridium novyi NT 4539985 YP_878402.1 CDS deoD NC_008593.1 1530532 1531233 R identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107; purine nucleoside phosphorylase complement(1530532..1531233) Clostridium novyi NT 4541807 YP_878403.1 CDS NT01CX_2330 NC_008593.1 1531640 1533373 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1531640..1533373) Clostridium novyi NT 4540243 YP_878404.1 CDS NT01CX_2331 NC_008593.1 1533669 1535093 D ISBma2, transposase 1533669..1535093 Clostridium novyi NT 4541744 YP_878405.1 CDS NT01CX_2332 NC_008593.1 1535192 1535404 R hypothetical protein complement(1535192..1535404) Clostridium novyi NT 4541950 YP_878406.1 CDS NT01CX_2333 NC_008593.1 1535649 1536824 R identified by match to protein family HMM PF02353; cyclopropane fatty acid synthase family protein complement(1535649..1536824) Clostridium novyi NT 4542005 YP_878407.1 CDS NT01CX_2334 NC_008593.1 1536921 1537541 R identified by match to protein family HMM PF00005; nitrate ABC transporter ATP-binding protein complement(1536921..1537541) Clostridium novyi NT 4539961 YP_878408.1 CDS NT01CX_2335 NC_008593.1 1537534 1538295 R identified by match to protein family HMM PF00528; taurine ABC transporter permease complement(1537534..1538295) Clostridium novyi NT 4540365 YP_878409.1 CDS NT01CX_2336 NC_008593.1 1538267 1539262 R lipoprotein complement(1538267..1539262) Clostridium novyi NT 4541700 YP_878410.1 CDS NT01CX_2337 NC_008593.1 1539418 1539846 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(1539418..1539846) Clostridium novyi NT 4539591 YP_878411.1 CDS NT01CX_2338 NC_008593.1 1540036 1540941 R identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV complement(1540036..1540941) Clostridium novyi NT 4540647 YP_878412.1 CDS rpsD NC_008593.1 1541119 1541709 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1541119..1541709) Clostridium novyi NT 4539978 YP_878413.1 CDS NT01CX_2340 NC_008593.1 1541889 1543658 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1541889..1543658) Clostridium novyi NT 4540856 YP_878414.1 CDS NT01CX_2341 NC_008593.1 1543825 1544496 R identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase complement(1543825..1544496) Clostridium novyi NT 4541242 YP_878415.1 CDS NT01CX_2342 NC_008593.1 1544581 1545531 R hypothetical protein complement(1544581..1545531) Clostridium novyi NT 4541141 YP_878416.1 CDS NT01CX_2343 NC_008593.1 1545645 1547996 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase complement(1545645..1547996) Clostridium novyi NT 4540446 YP_878417.1 CDS NT01CX_2344 NC_008593.1 1548071 1548964 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1548071..1548964) Clostridium novyi NT 4539627 YP_878418.1 CDS NT01CX_2345 NC_008593.1 1549097 1550101 D identified by match to protein family HMM PF03601; hypothetical protein 1549097..1550101 Clostridium novyi NT 4541128 YP_878419.1 CDS NT01CX_2346 NC_008593.1 1550197 1551570 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; Na+ driven multidrug efflux pump complement(1550197..1551570) Clostridium novyi NT 4541190 YP_878420.1 CDS NT01CX_2347 NC_008593.1 1551752 1554637 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1551752..1554637) Clostridium novyi NT 4539657 YP_878421.1 CDS NT01CX_2348 NC_008593.1 1554651 1557113 R identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box/GGDEF family protein complement(1554651..1557113) Clostridium novyi NT 4540192 YP_878422.1 CDS NT01CX_2349 NC_008593.1 1557600 1558919 D identified by match to protein family HMM PF00209; sodium- and chloride-dependent transporter 1557600..1558919 Clostridium novyi NT 4540435 YP_878423.1 CDS NT01CX_2350 NC_008593.1 1559075 1560682 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1559075..1560682) Clostridium novyi NT 4539630 YP_878424.1 CDS NT01CX_2351 NC_008593.1 1560933 1561940 R identified by match to protein family HMM PF06207; hypothetical protein complement(1560933..1561940) Clostridium novyi NT 4540452 YP_878425.1 CDS NT01CX_2352 NC_008593.1 1562046 1562591 R identified by match to protein family HMM PF03358; hypothetical protein complement(1562046..1562591) Clostridium novyi NT 4541719 YP_878426.1 CDS NT01CX_2353 NC_008593.1 1562717 1563748 R hypothetical protein complement(1562717..1563748) Clostridium novyi NT 4541975 YP_878427.1 CDS NT01CX_2354 NC_008593.1 1563907 1565334 R identified by match to protein family HMM PF00324; lysine-specific permease complement(1563907..1565334) Clostridium novyi NT 4541210 YP_878428.1 CDS NT01CX_2355 NC_008593.1 1565752 1566867 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase complement(1565752..1566867) Clostridium novyi NT 4540092 YP_878429.1 CDS NT01CX_2356 NC_008593.1 1567223 1567420 D identified by match to protein family HMM PF00313; cold shock protein -like protein 1567223..1567420 Clostridium novyi NT 4541866 YP_878430.1 CDS NT01CX_2357 NC_008593.1 1567461 1567910 R identified by match to protein family HMM PF04892; acetobutylicum phosphotransbutyrylase complement(1567461..1567910) Clostridium novyi NT 4541766 YP_878431.1 CDS NT01CX_2358 NC_008593.1 1568055 1568657 R hypothetical protein complement(1568055..1568657) Clostridium novyi NT 4539964 YP_878432.1 CDS NT01CX_2359 NC_008593.1 1568798 1569349 R identified by match to protein family HMM PF01025; co-chaperone GrpE complement(1568798..1569349) Clostridium novyi NT 4540852 YP_878433.1 CDS NT01CX_2360 NC_008593.1 1569422 1570357 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1569422..1570357) Clostridium novyi NT 4540224 YP_878434.1 CDS NT01CX_2361 NC_008593.1 1570640 1571185 D hypothetical protein 1570640..1571185 Clostridium novyi NT 4541964 YP_878435.1 CDS NT01CX_2362 NC_008593.1 1571245 1571736 R hypothetical protein complement(1571245..1571736) Clostridium novyi NT 4541695 YP_878436.1 CDS NT01CX_2363 NC_008593.1 1571872 1572966 D hypothetical protein 1571872..1572966 Clostridium novyi NT 4541714 YP_878437.1 CDS NT01CX_2364 NC_008593.1 1572501 1572722 R hypothetical protein complement(1572501..1572722) Clostridium novyi NT 4541003 YP_878438.1 CDS NT01CX_2365 NC_008593.1 1573023 1574051 R identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase subunit beta complement(1573023..1574051) Clostridium novyi NT 4540285 YP_878439.1 CDS nrdA NC_008593.1 1574067 1576361 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1574067..1576361) Clostridium novyi NT 4541984 YP_878440.1 CDS NT01CX_2367 NC_008593.1 1576572 1578092 R hypothetical protein complement(1576572..1578092) Clostridium novyi NT 4541848 YP_878441.1 CDS hgdB NC_008593.1 1578290 1579405 R identified by match to protein family HMM PF06050; R-phenyllactate dehydratase small subunit complement(1578290..1579405) Clostridium novyi NT 4540846 YP_878442.1 CDS hgdA NC_008593.1 1579398 1580669 R identified by match to protein family HMM PF06050; R-phenyllactate dehydratase medium subunit complement(1579398..1580669) Clostridium novyi NT 4540220 YP_878443.1 CDS hgdC NC_008593.1 1580688 1581473 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; R-phenyllactate dehydratase activator complement(1580688..1581473) Clostridium novyi NT 4541249 YP_878444.1 CDS NT01CX_2371 NC_008593.1 1581505 1581918 R identified by match to protein family HMM PF00903; 4-hydroxyphenylpyruvate dioxygenase complement(1581505..1581918) Clostridium novyi NT 4540823 YP_878445.1 CDS NT01CX_2372 NC_008593.1 1582002 1583555 R identified by match to protein family HMM PF01144; acetyl-CoA-transferase subunit complement(1582002..1583555) Clostridium novyi NT 4541513 YP_878446.1 CDS NT01CX_2373 NC_008593.1 1584037 1584303 R hypothetical protein complement(1584037..1584303) Clostridium novyi NT 4541712 YP_878447.1 CDS NT01CX_2374 NC_008593.1 1584587 1585522 D identified by match to protein family HMM PF00070; thioredoxin reductase 1584587..1585522 Clostridium novyi NT 4541000 YP_878448.1 CDS NT01CX_2375 NC_008593.1 1585529 1585756 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; glutaredoxin 1585529..1585756 Clostridium novyi NT 4541731 YP_878449.1 CDS NT01CX_2376 NC_008593.1 1585777 1586322 D identified by match to protein family HMM PF00255; glutathione peroxidase 1585777..1586322 Clostridium novyi NT 4541506 YP_878450.1 CDS NT01CX_2377 NC_008593.1 1586359 1587372 R S-layer protein complement(1586359..1587372) Clostridium novyi NT 4541858 YP_878451.1 CDS argJ NC_008593.1 1587551 1588768 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(1587551..1588768) Clostridium novyi NT 4540919 YP_878452.1 CDS argC NC_008593.1 1588793 1589830 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1588793..1589830) Clostridium novyi NT 4540066 YP_878453.1 CDS argB NC_008593.1 1589976 1590830 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 1589976..1590830 Clostridium novyi NT 4539929 YP_878454.1 CDS argD NC_008593.1 1590812 1591978 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 1590812..1591978 Clostridium novyi NT 4539684 YP_878455.1 CDS hgdB NC_008593.1 1592192 1593190 D identified by match to protein family HMM PF06050; chain of benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase 1592192..1593190 Clostridium novyi NT 4540331 YP_878456.1 CDS NT01CX_2383 NC_008593.1 1593191 1593949 D identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 1593191..1593949 Clostridium novyi NT 4539601 YP_878457.1 CDS NT01CX_2384 NC_008593.1 1593964 1594383 D identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 1593964..1594383 Clostridium novyi NT 4540575 YP_878458.1 CDS NT01CX_2385 NC_008593.1 1594394 1595062 D identified by match to protein family HMM PF04055; MoaA family Fe-S oxidoreductase 1594394..1595062 Clostridium novyi NT 4541144 YP_878459.1 CDS NT01CX_2386 NC_008593.1 1595066 1595731 D identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 1595066..1595731 Clostridium novyi NT 4542003 YP_878460.1 CDS NT01CX_2387 NC_008593.1 1595865 1596662 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(1595865..1596662) Clostridium novyi NT 4540067 YP_878461.1 CDS NT01CX_2388 NC_008593.1 1596751 1597467 R membrane-spanning protein complement(1596751..1597467) Clostridium novyi NT 4540270 YP_878462.1 CDS NT01CX_2389 NC_008593.1 1597468 1598511 R identified by match to protein family HMM PF03773; permease family protein complement(1597468..1598511) Clostridium novyi NT 4539775 YP_878463.1 CDS NT01CX_2390 NC_008593.1 1598522 1599163 R cobalamin synthesis protein complement(1598522..1599163) Clostridium novyi NT 4540378 YP_878464.1 CDS NT01CX_2391 NC_008593.1 1599176 1600129 R identified by match to protein family HMM PF02492; cobalamin synthesis protein complement(1599176..1600129) Clostridium novyi NT 4541254 YP_878465.1 CDS NT01CX_2392 NC_008593.1 1600661 1601239 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1600661..1601239) Clostridium novyi NT 4540312 YP_878466.1 CDS NT01CX_2393 NC_008593.1 1601315 1601581 R hypothetical protein complement(1601315..1601581) Clostridium novyi NT 4541876 YP_878467.1 CDS NT01CX_2394 NC_008593.1 1601806 1601940 R hypothetical protein complement(1601806..1601940) Clostridium novyi NT 4540371 YP_878468.1 CDS NT01CX_2395 NC_008593.1 1602253 1602873 D hypothetical protein 1602253..1602873 Clostridium novyi NT 4539585 YP_878469.1 CDS NT01CX_2396 NC_008593.1 1602983 1605019 R identified by match to protein family HMM PF03190; thymidylate kinase complement(1602983..1605019) Clostridium novyi NT 4541747 YP_878470.1 CDS NT01CX_2397 NC_008593.1 1605165 1606496 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1605165..1606496) Clostridium novyi NT 4541046 YP_878471.1 CDS apgM NC_008593.1 1606693 1607946 R identified by match to protein family HMM PF01676; match to protein family HMM TIGR00306; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase complement(1606693..1607946) Clostridium novyi NT 4540839 YP_878472.1 CDS NT01CX_2399 NC_008593.1 1607993 1608712 R hypothetical protein complement(1607993..1608712) Clostridium novyi NT 4541673 YP_878473.1 CDS NT01CX_2400 NC_008593.1 1608726 1610192 R identified by match to protein family HMM PF00939; anion transporter family protein complement(1608726..1610192) Clostridium novyi NT 4541053 YP_878474.1 CDS NT01CX_2401 NC_008593.1 1610506 1611447 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 1610506..1611447 Clostridium novyi NT 4541092 YP_878475.1 CDS NT01CX_2402 NC_008593.1 1611555 1612748 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase complement(1611555..1612748) Clostridium novyi NT 4541927 YP_878476.1 CDS NT01CX_2403 NC_008593.1 1612758 1613453 R identified by match to protein family HMM PF01863; zinc metalloprotease complement(1612758..1613453) Clostridium novyi NT 4539693 YP_878477.1 CDS NT01CX_2404 NC_008593.1 1613450 1614469 R hypothetical protein complement(1613450..1614469) Clostridium novyi NT 4540121 YP_878478.1 CDS NT01CX_2405 NC_008593.1 1614664 1615062 R transporter complement(1614664..1615062) Clostridium novyi NT 4539628 YP_878479.1 CDS hsdR NC_008593.1 1615284 1618481 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; hypothetical protein complement(1615284..1618481) Clostridium novyi NT 4540513 YP_878480.1 CDS NT01CX_2407 NC_008593.1 1618478 1619683 R identified by match to protein family HMM PF01420; type I restriction-modification system specificity subunit complement(1618478..1619683) Clostridium novyi NT 4540819 YP_878481.1 CDS NT01CX_2408 NC_008593.1 1619680 1621797 R identified by match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system DNA methylase complement(1619680..1621797) Clostridium novyi NT 4540454 YP_878482.1 CDS NT01CX_2409 NC_008593.1 1622629 1623201 R ISBma2, transposase complement(1622629..1623201) Clostridium novyi NT 4541091 YP_878483.1 CDS NT01CX_2410 NC_008593.1 1623351 1623674 R hypothetical protein complement(1623351..1623674) Clostridium novyi NT 4541894 YP_878484.1 CDS NT01CX_2411 NC_008593.1 1623850 1625823 R hypothetical protein complement(1623850..1625823) Clostridium novyi NT 4540433 YP_878485.1 CDS rumA NC_008593.1 1626178 1627530 R identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(1626178..1627530) Clostridium novyi NT 4539719 YP_878486.1 CDS NT01CX_2413 NC_008593.1 1627556 1627876 R hypothetical protein complement(1627556..1627876) Clostridium novyi NT 4541331 YP_878487.1 CDS NT01CX_2414 NC_008593.1 1628343 1629242 D identified by match to protein family HMM PF00753; zinc metallohydrolase 1628343..1629242 Clostridium novyi NT 4541512 YP_878488.1 CDS NT01CX_2415 NC_008593.1 1629316 1631382 R hypothetical protein complement(1629316..1631382) Clostridium novyi NT 4541073 YP_878489.1 CDS NT01CX_2416 NC_008593.1 1631438 1632130 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(1631438..1632130) Clostridium novyi NT 4539857 YP_878490.1 CDS NT01CX_2417 NC_008593.1 1632388 1633815 R identified by match to protein family HMM PF00860; guanine-hypoxanthine permease complement(1632388..1633815) Clostridium novyi NT 4540661 YP_878491.1 CDS NT01CX_2418 NC_008593.1 1634243 1639237 R identified by match to protein family HMM PF01071; match to protein family HMM PF02769; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase complement(1634243..1639237) Clostridium novyi NT 4540052 YP_878492.1 CDS purH NC_008593.1 1639266 1640768 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1639266..1640768) Clostridium novyi NT 4540229 YP_878493.1 CDS purN NC_008593.1 1640795 1641415 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1640795..1641415) Clostridium novyi NT 4539757 YP_878494.1 CDS purM NC_008593.1 1641403 1642398 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1641403..1642398) Clostridium novyi NT 4540669 YP_878495.1 CDS purF NC_008593.1 1642407 1643783 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1642407..1643783) Clostridium novyi NT 4539783 YP_878496.1 CDS purC NC_008593.1 1643801 1644508 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(1643801..1644508) Clostridium novyi NT 4541646 YP_878497.1 CDS purE NC_008593.1 1644510 1644989 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1644510..1644989) Clostridium novyi NT 4539592 YP_878498.1 CDS NT01CX_2425 NC_008593.1 1645219 1646607 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein complement(1645219..1646607) Clostridium novyi NT 4541077 YP_878499.1 CDS NT01CX_2426 NC_008593.1 1647025 1647543 R hypothetical protein complement(1647025..1647543) Clostridium novyi NT 4540097 YP_878500.1 CDS NT01CX_2427 NC_008593.1 1647916 1648512 R similar to YPAA B. subtilis; hypothetical protein complement(1647916..1648512) Clostridium novyi NT 4541219 YP_878501.1 CDS brnQ NC_008593.1 1649289 1650596 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1649289..1650596 Clostridium novyi NT 4541784 YP_878502.1 CDS feoB NC_008593.1 1650669 1652684 R identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(1650669..1652684) Clostridium novyi NT 4541722 YP_878503.1 CDS NT01CX_2430 NC_008593.1 1652747 1652989 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(1652747..1652989) Clostridium novyi NT 4541381 YP_878504.1 CDS NT01CX_2431 NC_008593.1 1653006 1653230 R identified by match to protein family HMM PF04023; hypothetical protein complement(1653006..1653230) Clostridium novyi NT 4541202 YP_878505.1 CDS NT01CX_2432 NC_008593.1 1653465 1653971 R hypothetical protein complement(1653465..1653971) Clostridium novyi NT 4540120 YP_878506.1 CDS NT01CX_2433 NC_008593.1 1654136 1654774 R hypothetical protein complement(1654136..1654774) Clostridium novyi NT 4540061 YP_878507.1 CDS NT01CX_2434 NC_008593.1 1654767 1655633 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1654767..1655633) Clostridium novyi NT 4541501 YP_878508.1 CDS NT01CX_2435 NC_008593.1 1655645 1656016 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1655645..1656016) Clostridium novyi NT 4541945 YP_878509.1 CDS NT01CX_2436 NC_008593.1 1656125 1656736 R hypothetical protein complement(1656125..1656736) Clostridium novyi NT 4540912 YP_878510.1 CDS NT01CX_0001 NC_008593.1 1657671 1658459 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 1657671..1658459 Clostridium novyi NT 4541604 YP_878511.1 CDS NT01CX_0002 NC_008593.1 1658523 1659821 R membrane associated lipoprotein complement(1658523..1659821) Clostridium novyi NT 4541605 YP_878512.1 CDS crcB NC_008593.1 1660069 1660455 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1660069..1660455) Clostridium novyi NT 4541606 YP_878513.1 CDS NT01CX_0004 NC_008593.1 1660626 1661147 R identified by match to protein family HMM PF00892; integral membrane protein complement(1660626..1661147) Clostridium novyi NT 4541607 YP_878514.1 CDS NT01CX_0005 NC_008593.1 1661728 1662282 D identified by match to protein family HMM PF01381; DNA-binding protein 1661728..1662282 Clostridium novyi NT 4541608 YP_878515.1 CDS NT01CX_0006 NC_008593.1 1662342 1662863 R identified by match to protein family HMM PF03929; PepSY-associated TM helix family protein complement(1662342..1662863) Clostridium novyi NT 4541609 YP_878516.1 CDS NT01CX_0007 NC_008593.1 1663130 1663690 D hypothetical protein 1663130..1663690 Clostridium novyi NT 4541610 YP_878517.1 CDS NT01CX_0008 NC_008593.1 1663785 1664144 R hypothetical protein complement(1663785..1664144) Clostridium novyi NT 4541611 YP_878518.1 CDS NT01CX_0009 NC_008593.1 1664186 1664335 R microcin immunity protein MccF complement(1664186..1664335) Clostridium novyi NT 4541612 YP_878519.1 CDS NT01CX_0010 NC_008593.1 1664335 1664874 R identified by match to protein family HMM PF00583; acetyltransferase complement(1664335..1664874) Clostridium novyi NT 4541613 YP_878520.1 CDS NT01CX_0011 NC_008593.1 1664891 1665295 R hypothetical protein complement(1664891..1665295) Clostridium novyi NT 4541614 YP_878521.1 CDS NT01CX_0012 NC_008593.1 1665310 1665870 R identified by match to protein family HMM PF00583; acetyltransferase complement(1665310..1665870) Clostridium novyi NT 4541615 YP_878522.1 CDS NT01CX_0013 NC_008593.1 1666049 1667359 R identified by match to protein family HMM PF01554; MATE efflux family protein complement(1666049..1667359) Clostridium novyi NT 4541616 YP_878523.1 CDS NT01CX_0014 NC_008593.1 1667449 1668246 R identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein complement(1667449..1668246) Clostridium novyi NT 4541617 YP_878524.1 CDS pflB NC_008593.1 1668652 1670898 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1668652..1670898 Clostridium novyi NT 4541618 YP_878525.1 CDS NT01CX_0016 NC_008593.1 1670885 1671607 D identified by match to protein family HMM PF04055; pyruvate formate-lyase activating enzyme 1670885..1671607 Clostridium novyi NT 4541619 YP_878526.1 CDS NT01CX_0017 NC_008593.1 1671701 1672279 R hypothetical protein complement(1671701..1672279) Clostridium novyi NT 4541620 YP_878527.1 CDS NT01CX_0018 NC_008593.1 1672490 1672882 R hypothetical protein complement(1672490..1672882) Clostridium novyi NT 4540011 YP_878528.1 CDS NT01CX_0019 NC_008593.1 1672876 1673430 R identified by match to protein family HMM PF02632; BioY family protein complement(1672876..1673430) Clostridium novyi NT 4540012 YP_878529.1 CDS NT01CX_0020 NC_008593.1 1673887 1675113 D identified by match to protein family HMM PF00999; Sodium/hydrogen exchanger family protein 1673887..1675113 Clostridium novyi NT 4540013 YP_878530.1 CDS NT01CX_0021 NC_008593.1 1675339 1678881 D identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; serine protease 1675339..1678881 Clostridium novyi NT 4540014 YP_878531.1 CDS NT01CX_0022 NC_008593.1 1678933 1680423 R hypothetical protein complement(1678933..1680423) Clostridium novyi NT 4540015 YP_878532.1 CDS NT01CX_0023 NC_008593.1 1680521 1680751 D hypothetical protein 1680521..1680751 Clostridium novyi NT 4540016 YP_878533.1 CDS NT01CX_0024 NC_008593.1 1680823 1682817 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(1680823..1682817) Clostridium novyi NT 4540017 YP_878534.1 CDS NT01CX_0025 NC_008593.1 1683016 1683597 R identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator complement(1683016..1683597) Clostridium novyi NT 4540018 YP_878535.1 CDS NT01CX_0026 NC_008593.1 1683849 1685852 D identified by match to protein family HMM PF00070; match to protein family HMM PF00724; 2,4-dienoyl-CoA reductase 1683849..1685852 Clostridium novyi NT 4540019 YP_878536.1 CDS NT01CX_0027 NC_008593.1 1685963 1686352 D lipoprotein 1685963..1686352 Clostridium novyi NT 4540020 YP_878537.1 CDS dut NC_008593.1 1686669 1687097 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1686669..1687097) Clostridium novyi NT 4540021 YP_878538.1 CDS NT01CX_0029 NC_008593.1 1687177 1687287 R hypothetical protein complement(1687177..1687287) Clostridium novyi NT 4540022 YP_878539.1 CDS NT01CX_0030 NC_008593.1 1687454 1688305 R N-acetylmuramoyl-L-alanine amidase complement(1687454..1688305) Clostridium novyi NT 4540023 YP_878540.1 CDS NT01CX_0031 NC_008593.1 1688562 1688675 R hypothetical protein complement(1688562..1688675) Clostridium novyi NT 4540024 YP_878541.1 CDS NT01CX_0032 NC_008593.1 1688976 1690190 R hypothetical protein complement(1688976..1690190) Clostridium novyi NT 4540025 YP_878542.1 CDS NT01CX_0033 NC_008593.1 1690770 1691585 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1690770..1691585) Clostridium novyi NT 4540026 YP_878543.1 CDS NT01CX_0034 NC_008593.1 1691576 1692265 R identified by match to protein family HMM PF04816; hypothetical protein complement(1691576..1692265) Clostridium novyi NT 4540027 YP_878544.1 CDS NT01CX_0035 NC_008593.1 1692276 1693166 R hypothetical protein complement(1692276..1693166) Clostridium novyi NT 4540028 YP_878545.1 CDS NT01CX_0036 NC_008593.1 1693365 1694804 D ISBma2, transposase 1693365..1694804 Clostridium novyi NT 4540029 YP_878546.1 CDS NT01CX_0037 NC_008593.1 1694879 1695985 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1694879..1695985) Clostridium novyi NT 4540344 YP_878547.1 CDS dnaG NC_008593.1 1695991 1697784 R synthesizes RNA primers at the replication forks; DNA primase complement(1695991..1697784) Clostridium novyi NT 4540345 YP_878548.1 CDS NT01CX_0039 NC_008593.1 1698161 1699216 D spore coat protein 1698161..1699216 Clostridium novyi NT 4540346 YP_878549.1 CDS NT01CX_0040 NC_008593.1 1699285 1699881 R identified by match to protein family HMM PF00571; hypothetical protein complement(1699285..1699881) Clostridium novyi NT 4540347 YP_878550.1 CDS NT01CX_0041 NC_008593.1 1700075 1700701 R identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein complement(1700075..1700701) Clostridium novyi NT 4540348 YP_878551.1 CDS recO NC_008593.1 1700694 1701464 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1700694..1701464) Clostridium novyi NT 4540349 YP_878552.1 CDS era NC_008593.1 1701485 1702369 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1701485..1702369) Clostridium novyi NT 4540350 YP_878553.1 CDS NT01CX_0044 NC_008593.1 1702379 1702777 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(1702379..1702777) Clostridium novyi NT 4540351 YP_878554.1 CDS dgkA NC_008593.1 1702877 1703587 R identified by match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase complement(1702877..1703587) Clostridium novyi NT 4540352 YP_878555.1 CDS NT01CX_0046 NC_008593.1 1703682 1704182 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(1703682..1704182) Clostridium novyi NT 4540353 YP_878556.1 CDS NT01CX_0047 NC_008593.1 1704207 1706234 R identified by match to protein family HMM PF01966; match to protein family HMM PF07698; match to protein family HMM TIGR00277; HD superfamily hydrolase domain-containing protein complement(1704207..1706234) Clostridium novyi NT 4540354 YP_878557.1 CDS NT01CX_0048 NC_008593.1 1706288 1707496 R identified by match to protein family HMM PF06898; stage IV sporulation protein complement(1706288..1707496) Clostridium novyi NT 4540355 YP_878558.1 CDS NT01CX_0049 NC_008593.1 1707493 1707780 R hypothetical protein complement(1707493..1707780) Clostridium novyi NT 4540356 YP_878559.1 CDS NT01CX_0050 NC_008593.1 1707931 1708374 R identified by match to protein family HMM PF02637; GatB/Yqey family protein complement(1707931..1708374) Clostridium novyi NT 4540357 YP_878560.1 CDS rpsU NC_008593.1 1708402 1708584 R identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 complement(1708402..1708584) Clostridium novyi NT 4540358 YP_878561.1 CDS NT01CX_0052 NC_008593.1 1708724 1709068 R identified by match to protein family HMM PF01230; Hit family protein complement(1708724..1709068) Clostridium novyi NT 4540359 YP_878562.1 CDS NT01CX_0053 NC_008593.1 1709155 1710456 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme complement(1709155..1710456) Clostridium novyi NT 4540360 YP_878563.1 CDS NT01CX_0054 NC_008593.1 1710456 1711211 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1710456..1711211) Clostridium novyi NT 4540361 YP_878564.1 CDS prmA NC_008593.1 1711227 1712165 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(1711227..1712165) Clostridium novyi NT 4540362 YP_878565.1 CDS dnaJ NC_008593.1 1712292 1713422 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1712292..1713422) Clostridium novyi NT 4540363 YP_878566.1 CDS dnaK NC_008593.1 1713521 1715374 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1713521..1715374) Clostridium novyi NT 4541654 YP_878567.1 CDS grpE NC_008593.1 1715430 1716047 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1715430..1716047) Clostridium novyi NT 4541655 YP_878568.1 CDS hrcA NC_008593.1 1716059 1717123 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1716059..1717123) Clostridium novyi NT 4541656 YP_878569.1 CDS NT01CX_0060 NC_008593.1 1717318 1718445 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1717318..1718445) Clostridium novyi NT 4541657 YP_878570.1 CDS lepA NC_008593.1 1718473 1720278 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1718473..1720278) Clostridium novyi NT 4541658 YP_878571.1 CDS NT01CX_0062 NC_008593.1 1720376 1720771 R hypothetical protein complement(1720376..1720771) Clostridium novyi NT 4541659 YP_878572.1 CDS NT01CX_0063 NC_008593.1 1720823 1721929 R identified by match to protein family HMM PF07454; stage II sporulation protein P complement(1720823..1721929) Clostridium novyi NT 4541660 YP_878573.1 CDS NT01CX_0064 NC_008593.1 1721993 1722967 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(1721993..1722967) Clostridium novyi NT 4541661 YP_878574.1 CDS rpsT NC_008593.1 1723165 1723431 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1723165..1723431 Clostridium novyi NT 4541662 YP_878575.1 CDS holA NC_008593.1 1723501 1724523 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1723501..1724523) Clostridium novyi NT 4541663 YP_878576.1 CDS NT01CX_0067 NC_008593.1 1724551 1725891 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComE operon protein 3 complement(1724551..1725891) Clostridium novyi NT 4541664 YP_878577.1 CDS NT01CX_0068 NC_008593.1 1725977 1728574 R identified by match to protein family HMM PF00122; calcium-transporting ATPase complement(1725977..1728574) Clostridium novyi NT 4541665 YP_878578.1 CDS NT01CX_0069 NC_008593.1 1728700 1728936 R hypothetical protein complement(1728700..1728936) Clostridium novyi NT 4541666 YP_878579.1 CDS NT01CX_0070 NC_008593.1 1729028 1729702 R identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein complement(1729028..1729702) Clostridium novyi NT 4541667 YP_878580.1 CDS NT01CX_0071 NC_008593.1 1729860 1731092 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1729860..1731092 Clostridium novyi NT 4541668 YP_878581.1 CDS NT01CX_0072 NC_008593.1 1731131 1732036 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D complement(1731131..1732036) Clostridium novyi NT 4541669 YP_878582.1 CDS NT01CX_0073 NC_008593.1 1732069 1733295 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; membrane-bound protein lytR complement(1732069..1733295) Clostridium novyi NT 4541670 YP_878583.1 CDS NT01CX_0074 NC_008593.1 1733305 1733874 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; hypothetical protein complement(1733305..1733874) Clostridium novyi NT 4541671 YP_878584.1 CDS nadD NC_008593.1 1733887 1734489 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(1733887..1734489) Clostridium novyi NT 4541672 YP_878585.1 CDS NT01CX_0076 NC_008593.1 1734591 1734884 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein complement(1734591..1734884) Clostridium novyi NT 4541563 YP_878586.1 CDS obgE NC_008593.1 1734900 1736174 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1734900..1736174) Clostridium novyi NT 4541564 YP_878587.1 CDS NT01CX_0078 NC_008593.1 1736206 1736745 R hypothetical protein complement(1736206..1736745) Clostridium novyi NT 4541565 YP_878588.1 CDS rpmA NC_008593.1 1736803 1737102 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1736803..1737102) Clostridium novyi NT 4541566 YP_878589.1 CDS NT01CX_0080 NC_008593.1 1737106 1737432 R identified by match to protein family HMM PF04327; hypothetical protein complement(1737106..1737432) Clostridium novyi NT 4541567 YP_878590.1 CDS rplU NC_008593.1 1737435 1737746 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1737435..1737746) Clostridium novyi NT 4541568 YP_878591.1 CDS NT01CX_0082 NC_008593.1 1737873 1739318 R ribonuclease G complement(1737873..1739318) Clostridium novyi NT 4541569 YP_878592.1 CDS NT01CX_0083 NC_008593.1 1739343 1739960 R identified by match to protein family HMM PF00929; exonuclease complement(1739343..1739960) Clostridium novyi NT 4541570 YP_878593.1 CDS NT01CX_0084 NC_008593.1 1740102 1740746 R hypothetical protein complement(1740102..1740746) Clostridium novyi NT 4541571 YP_878594.1 CDS NT01CX_0085 NC_008593.1 1740784 1742655 R identified by match to protein family HMM PF04055; Fe-S oxidoreductase complement(1740784..1742655) Clostridium novyi NT 4541572 YP_878595.1 CDS NT01CX_0086 NC_008593.1 1742729 1743646 R identified by match to protein family HMM PF00571; match to protein family HMM PF02163; sterol-regulatory element binding protein (SREBP) site 2 protease complement(1742729..1743646) Clostridium novyi NT 4541573 YP_878596.1 CDS NT01CX_0087 NC_008593.1 1743673 1744407 R identified by match to protein family HMM PF01551; cell wall endopeptidase complement(1743673..1744407) Clostridium novyi NT 4541574 YP_878597.1 CDS nadC NC_008593.1 1744584 1745429 R identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase complement(1744584..1745429) Clostridium novyi NT 4541575 YP_878598.1 CDS NT01CX_0089 NC_008593.1 1745410 1746705 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1745410..1746705) Clostridium novyi NT 4541576 YP_878599.1 CDS NT01CX_0090 NC_008593.1 1746717 1747619 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1746717..1747619) Clostridium novyi NT 4541577 YP_878600.1 CDS NT01CX_0091 NC_008593.1 1747850 1748506 D hypothetical protein 1747850..1748506 Clostridium novyi NT 4541578 YP_878601.1 CDS thiC NC_008593.1 1748772 1750085 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1748772..1750085 Clostridium novyi NT 4541579 YP_878602.1 CDS NT01CX_0093 NC_008593.1 1750220 1751800 D identified by match to protein family HMM PF00488; mismatch repair protein MutS-like protein 1750220..1751800 Clostridium novyi NT 4541580 YP_878603.1 CDS NT01CX_0094 NC_008593.1 1751850 1752770 R identified by match to protein family HMM PF01458; hypothetical protein complement(1751850..1752770) Clostridium novyi NT 4541581 YP_878604.1 CDS NT01CX_0095 NC_008593.1 1752776 1753507 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1752776..1753507) Clostridium novyi NT 4541582 YP_878605.1 CDS NT01CX_0096 NC_008593.1 1753615 1754040 R identified by match to protein family HMM PF04246; positive regulator of sigma(E), RseC/MucC superfamily complement(1753615..1754040) Clostridium novyi NT 4540690 YP_878606.1 CDS NT01CX_0097 NC_008593.1 1754193 1755536 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1754193..1755536) Clostridium novyi NT 4540691 YP_878607.1 CDS NT01CX_0098 NC_008593.1 1755753 1756757 R 3-oxoacyl-(acyl-carrier-protein) synthase III complement(1755753..1756757) Clostridium novyi NT 4540692 YP_878608.1 CDS NT01CX_0099 NC_008593.1 1756891 1759344 R identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878; mannose-1-phosphate guanyltransferase complement(1756891..1759344) Clostridium novyi NT 4540693 YP_878609.1 CDS NT01CX_0100 NC_008593.1 1759356 1760561 R identified by match to protein family HMM PF00534; glycoside hydrolase complement(1759356..1760561) Clostridium novyi NT 4540694 YP_878610.1 CDS NT01CX_0101 NC_008593.1 1760709 1761656 R identified by match to protein family HMM PF01145; hypothetical protein complement(1760709..1761656) Clostridium novyi NT 4540695 YP_878611.1 CDS NT01CX_0102 NC_008593.1 1761693 1762118 R hypothetical protein complement(1761693..1762118) Clostridium novyi NT 4540696 YP_878612.1 CDS nadE NC_008593.1 1762341 1764254 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1762341..1764254 Clostridium novyi NT 4540697 YP_878613.1 CDS NT01CX_0104 NC_008593.1 1764320 1764742 R hypothetical protein complement(1764320..1764742) Clostridium novyi NT 4540698 YP_878614.1 CDS NT01CX_0105 NC_008593.1 1764901 1767513 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 1764901..1767513 Clostridium novyi NT 4540699 YP_878615.1 CDS NT01CX_0106 NC_008593.1 1767958 1768203 R hypothetical protein complement(1767958..1768203) Clostridium novyi NT 4540700 YP_878616.1 CDS NT01CX_0107 NC_008593.1 1768187 1768327 R Tgh044-like protein complement(1768187..1768327) Clostridium novyi NT 4540701 YP_878617.1 CDS NT01CX_0108 NC_008593.1 1768530 1768904 R hypothetical protein complement(1768530..1768904) Clostridium novyi NT 4540702 YP_878618.1 CDS NT01CX_0109 NC_008593.1 1768912 1769205 R hypothetical protein complement(1768912..1769205) Clostridium novyi NT 4540703 YP_878619.1 CDS NT01CX_0110 NC_008593.1 1769183 1769518 D hypothetical protein 1769183..1769518 Clostridium novyi NT 4540704 YP_878620.1 CDS NT01CX_0111 NC_008593.1 1769592 1769819 R hypothetical protein complement(1769592..1769819) Clostridium novyi NT 4540705 YP_878621.1 CDS NT01CX_0112 NC_008593.1 1770043 1770195 R integral membrane protein complement(1770043..1770195) Clostridium novyi NT 4540706 YP_878622.1 CDS NT01CX_0113 NC_008593.1 1770494 1770997 R hypothetical protein complement(1770494..1770997) Clostridium novyi NT 4540707 YP_878623.1 CDS NT01CX_0114 NC_008593.1 1771252 1771824 R hypothetical protein complement(1771252..1771824) Clostridium novyi NT 4540708 YP_878624.1 CDS NT01CX_0115 NC_008593.1 1771850 1772341 R hypothetical protein complement(1771850..1772341) Clostridium novyi NT 4539991 YP_878625.1 CDS NT01CX_0116 NC_008593.1 1772497 1772817 R hypothetical protein complement(1772497..1772817) Clostridium novyi NT 4539992 YP_878626.1 CDS NT01CX_0117 NC_008593.1 1773214 1773330 R hypothetical protein complement(1773214..1773330) Clostridium novyi NT 4539993 YP_878627.1 CDS NT01CX_0118 NC_008593.1 1773451 1773855 R hypothetical protein complement(1773451..1773855) Clostridium novyi NT 4539994 YP_878628.1 CDS NT01CX_0119 NC_008593.1 1773949 1774434 R hypothetical protein complement(1773949..1774434) Clostridium novyi NT 4539995 YP_878629.1 CDS NT01CX_0120 NC_008593.1 1774838 1775380 R hypothetical protein complement(1774838..1775380) Clostridium novyi NT 4539996 YP_878630.1 CDS NT01CX_0121 NC_008593.1 1775691 1775924 R hypothetical protein complement(1775691..1775924) Clostridium novyi NT 4539997 YP_878631.1 CDS NT01CX_0122 NC_008593.1 1775962 1776174 R hypothetical protein complement(1775962..1776174) Clostridium novyi NT 4539998 YP_878632.1 CDS NT01CX_0123 NC_008593.1 1776181 1776711 R hypothetical protein complement(1776181..1776711) Clostridium novyi NT 4539999 YP_878633.1 CDS NT01CX_0124 NC_008593.1 1776756 1777067 R hypothetical protein complement(1776756..1777067) Clostridium novyi NT 4540000 YP_878634.1 CDS NT01CX_0125 NC_008593.1 1777081 1777833 R hypothetical protein complement(1777081..1777833) Clostridium novyi NT 4540001 YP_878635.1 CDS NT01CX_0126 NC_008593.1 1777913 1778971 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein complement(1777913..1778971) Clostridium novyi NT 4540002 YP_878636.1 CDS NT01CX_0127 NC_008593.1 1779119 1780369 D hypothetical protein 1779119..1780369 Clostridium novyi NT 4540003 YP_878637.1 CDS NT01CX_0128 NC_008593.1 1780401 1781168 R identified by match to protein family HMM PF02231; match to protein family HMM TIGR01856; histidinol-phosphatase complement(1780401..1781168) Clostridium novyi NT 4540004 YP_878638.1 CDS NT01CX_0129 NC_008593.1 1781225 1781620 R hypothetical protein complement(1781225..1781620) Clostridium novyi NT 4540005 YP_878639.1 CDS NT01CX_0130 NC_008593.1 1781924 1782388 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 1781924..1782388 Clostridium novyi NT 4540006 YP_878640.1 CDS NT01CX_0131 NC_008593.1 1782558 1782767 D identified by match to protein family HMM PF04070; hypothetical protein 1782558..1782767 Clostridium novyi NT 4540007 YP_878641.1 CDS NT01CX_0132 NC_008593.1 1783253 1783774 D tryptophan transport protein 1783253..1783774 Clostridium novyi NT 4540008 YP_878642.1 CDS NT01CX_0133 NC_008593.1 1783858 1785612 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(1783858..1785612) Clostridium novyi NT 4540009 YP_878643.1 CDS argH NC_008593.1 1786029 1787342 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1786029..1787342) Clostridium novyi NT 4540010 YP_878644.1 CDS argG NC_008593.1 1787426 1788634 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1787426..1788634) Clostridium novyi NT 4540890 YP_878645.1 CDS NT01CX_0136 NC_008593.1 1788691 1789425 R identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATPase complement(1788691..1789425) Clostridium novyi NT 4540891 YP_878646.1 CDS NT01CX_0137 NC_008593.1 1789439 1790086 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(1789439..1790086) Clostridium novyi NT 4540892 YP_878647.1 CDS NT01CX_0138 NC_008593.1 1790092 1790904 R identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic protein complement(1790092..1790904) Clostridium novyi NT 4540893 YP_878648.1 CDS NT01CX_0139 NC_008593.1 1791151 1792149 R identified by match to protein family HMM PF00180; match to protein family HMM TIGR00175; NAD-dependent isocitrate dehydrogenase complement(1791151..1792149) Clostridium novyi NT 4540894 YP_878649.1 CDS NT01CX_0140 NC_008593.1 1792168 1794093 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1792168..1794093) Clostridium novyi NT 4540895 YP_878650.1 CDS NT01CX_0141 NC_008593.1 1794390 1795097 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1794390..1795097) Clostridium novyi NT 4540896 YP_878651.1 CDS NT01CX_0142 NC_008593.1 1795291 1796160 D identified by match to protein family HMM PF00753; ComE-like protein 1795291..1796160 Clostridium novyi NT 4540897 YP_878652.1 CDS NT01CX_0143 NC_008593.1 1796165 1796938 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1796165..1796938 Clostridium novyi NT 4540898 YP_878653.1 CDS porB NC_008593.1 1797021 1797974 R identified by match to protein family HMM PF02775; pyruvate synthase subunit porB complement(1797021..1797974) Clostridium novyi NT 4540899 YP_878654.1 CDS NT01CX_0145 NC_008593.1 1797987 1799174 R identified by match to protein family HMM PF01855; pyruvate synthase subunit porA complement(1797987..1799174) Clostridium novyi NT 4540900 YP_878655.1 CDS porD NC_008593.1 1799191 1799493 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179; pyruvate synthase subunit porD complement(1799191..1799493) Clostridium novyi NT 4540901 YP_878656.1 CDS porG NC_008593.1 1799480 1800064 R identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; pyruvate synthase subunit porC complement(1799480..1800064) Clostridium novyi NT 4540902 YP_878657.1 CDS NT01CX_0148 NC_008593.1 1800154 1801527 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(1800154..1801527) Clostridium novyi NT 4540903 YP_878658.1 CDS megL NC_008593.1 1801756 1802964 R catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase complement(1801756..1802964) Clostridium novyi NT 4540904 YP_878659.1 CDS NT01CX_0150 NC_008593.1 1803340 1804902 R identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; transcriptional regulator complement(1803340..1804902) Clostridium novyi NT 4540905 YP_878661.1 CDS NT01CX_0157 NC_008593.1 1810691 1811137 R hypothetical protein complement(1810691..1811137) Clostridium novyi NT 4540713 YP_878662.1 CDS NT01CX_0158 NC_008593.1 1811283 1812143 R phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1811283..1812143) Clostridium novyi NT 4540714 YP_878663.1 CDS NT01CX_0159 NC_008593.1 1812234 1813382 R hypothetical protein complement(1812234..1813382) Clostridium novyi NT 4540715 YP_878664.1 CDS NT01CX_0160 NC_008593.1 1813458 1814336 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1813458..1814336) Clostridium novyi NT 4540716 YP_878665.1 CDS NT01CX_0161 NC_008593.1 1814502 1815500 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A complement(1814502..1815500) Clostridium novyi NT 4540717 YP_878666.1 CDS NT01CX_0162 NC_008593.1 1815604 1816518 R identified by match to protein family HMM PF00532; ribose ABC transporter substrate-binding protein complement(1815604..1816518) Clostridium novyi NT 4540718 YP_878667.1 CDS NT01CX_0163 NC_008593.1 1816540 1817475 R identified by match to protein family HMM PF02653; ribose ABC transporter permease complement(1816540..1817475) Clostridium novyi NT 4540719 YP_878668.1 CDS NT01CX_0164 NC_008593.1 1817501 1819006 R identified by match to protein family HMM PF00005; ribose transport ATP-binding protein rbsA complement(1817501..1819006) Clostridium novyi NT 4540720 YP_878669.1 CDS NT01CX_0165 NC_008593.1 1819017 1819412 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1819017..1819412) Clostridium novyi NT 4540721 YP_878670.1 CDS rbsK NC_008593.1 1819413 1820345 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(1819413..1820345) Clostridium novyi NT 4540722 YP_878671.1 CDS NT01CX_0167 NC_008593.1 1820469 1820753 R hypothetical protein complement(1820469..1820753) Clostridium novyi NT 4540723 YP_878672.1 CDS NT01CX_0168 NC_008593.1 1820856 1822013 R identified by match to protein family HMM PF01979; amidohydrolase family protein complement(1820856..1822013) Clostridium novyi NT 4540724 YP_878673.1 CDS NT01CX_0169 NC_008593.1 1822174 1823598 R ISBma2, transposase complement(1822174..1823598) Clostridium novyi NT 4541423 YP_878674.1 CDS NT01CX_0170 NC_008593.1 1823817 1824128 R identified by match to protein family HMM PF01906; hypothetical protein complement(1823817..1824128) Clostridium novyi NT 4541424 YP_878675.1 CDS NT01CX_0171 NC_008593.1 1824228 1824515 R ABC transporter complement(1824228..1824515) Clostridium novyi NT 4541425 YP_878676.1 CDS NT01CX_0172 NC_008593.1 1824609 1825478 R identified by match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase complement(1824609..1825478) Clostridium novyi NT 4541426 YP_878677.1 CDS NT01CX_0173 NC_008593.1 1825542 1826765 R transglutaminase complement(1825542..1826765) Clostridium novyi NT 4541427 YP_878678.1 CDS NT01CX_0174 NC_008593.1 1826956 1827225 D ACT domain-containing protein; hypothetical protein 1826956..1827225 Clostridium novyi NT 4541428 YP_878679.1 CDS NT01CX_0175 NC_008593.1 1827240 1828598 D identified by match to protein family HMM PF05167; hypothetical protein 1827240..1828598 Clostridium novyi NT 4541429 YP_878680.1 CDS NT01CX_0176 NC_008593.1 1828687 1830408 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1828687..1830408) Clostridium novyi NT 4541430 YP_878681.1 CDS NT01CX_0177 NC_008593.1 1830809 1831258 R lipoprotein signal peptidase (prolipoprotein signalpeptidase) (Signal peptidase II) (SPase II) complement(1830809..1831258) Clostridium novyi NT 4541431 YP_878682.1 CDS NT01CX_0178 NC_008593.1 1831406 1831957 R inactivated, HRDL motif absent; serine/threonine kinase related protein complement(1831406..1831957) Clostridium novyi NT 4541432 YP_878683.1 CDS NT01CX_0179 NC_008593.1 1832083 1832601 R inactivated, HRDL motif absent; serine/threonine kinase related protein complement(1832083..1832601) Clostridium novyi NT 4541433 YP_878684.1 CDS NT01CX_0180 NC_008593.1 1832767 1833603 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(1832767..1833603) Clostridium novyi NT 4541434 YP_878685.1 CDS NT01CX_0181 NC_008593.1 1833857 1834585 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; phosphoserine phosphatase 1833857..1834585 Clostridium novyi NT 4541435 YP_878686.1 CDS NT01CX_0182 NC_008593.1 1834645 1835544 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1834645..1835544) Clostridium novyi NT 4541436 YP_878687.1 CDS ilvE NC_008593.1 1835620 1836531 R identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122; branched-chain amino acid aminotransferase complement(1835620..1836531) Clostridium novyi NT 4541437 YP_878688.1 CDS NT01CX_0184 NC_008593.1 1836691 1837509 R identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; NLPA family lipoprotein complement(1836691..1837509) Clostridium novyi NT 4541438 YP_878689.1 CDS NT01CX_0185 NC_008593.1 1837547 1838185 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1837547..1838185) Clostridium novyi NT 4541439 YP_878690.1 CDS NT01CX_0186 NC_008593.1 1838185 1839141 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1838185..1839141) Clostridium novyi NT 4541440 YP_878691.1 CDS NT01CX_0187 NC_008593.1 1839418 1840734 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(1839418..1840734) Clostridium novyi NT 4541441 YP_878692.1 CDS NT01CX_0188 NC_008593.1 1840934 1841800 R identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase complement(1840934..1841800) Clostridium novyi NT 4541014 YP_878693.1 CDS NT01CX_0189 NC_008593.1 1841882 1843009 R identified by match to protein family HMM PF05504; spore germination protein, gerKC complement(1841882..1843009) Clostridium novyi NT 4541015 YP_878694.1 CDS NT01CX_0190 NC_008593.1 1843015 1844127 R identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein complement(1843015..1844127) Clostridium novyi NT 4541016 YP_878695.1 CDS NT01CX_0191 NC_008593.1 1844111 1845601 R similar to Bacillus/Clostridium; identified by match to protein family HMM PF03323; GerA spore germination protein complement(1844111..1845601) Clostridium novyi NT 4541017 YP_878696.1 CDS ncs2 NC_008593.1 1845783 1847054 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease complement(1845783..1847054) Clostridium novyi NT 4541018 YP_878697.1 CDS NT01CX_0193 NC_008593.1 1847333 1847632 R early transcription factor 70 kDa subunit (VETF small subunit) complement(1847333..1847632) Clostridium novyi NT 4541019 YP_878698.1 CDS NT01CX_0194 NC_008593.1 1847803 1848396 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 1847803..1848396 Clostridium novyi NT 4541020 YP_878699.1 CDS NT01CX_0195 NC_008593.1 1848457 1850019 R identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage gated chloride channel family protein complement(1848457..1850019) Clostridium novyi NT 4541021 YP_878700.1 CDS NT01CX_0196 NC_008593.1 1850435 1851160 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 1850435..1851160 Clostridium novyi NT 4541022 YP_878701.1 CDS NT01CX_0197 NC_008593.1 1851190 1852560 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1851190..1852560 Clostridium novyi NT 4541023 YP_878702.1 CDS NT01CX_0198 NC_008593.1 1852648 1853601 R identified by match to protein family HMM PF00753; metallo beta-lactamase superfamily hydrolase complement(1852648..1853601) Clostridium novyi NT 4541024 YP_878703.1 CDS NT01CX_0199 NC_008593.1 1855378 1855665 R identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(1855378..1855665) Clostridium novyi NT 4541025 YP_878704.1 CDS NT01CX_0200 NC_008593.1 1855665 1856663 R identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(1855665..1856663) Clostridium novyi NT 4541026 YP_878705.1 CDS NT01CX_0201 NC_008593.1 1856676 1857170 R identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein complement(1856676..1857170) Clostridium novyi NT 4541027 YP_878706.1 CDS NT01CX_0202 NC_008593.1 1857179 1859800 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 complement(1857179..1859800) Clostridium novyi NT 4541028 YP_878707.1 CDS NT01CX_0203 NC_008593.1 1859861 1860499 R hypothetical protein complement(1859861..1860499) Clostridium novyi NT 4541029 YP_878708.1 CDS NT01CX_0204 NC_008593.1 1860631 1861650 R hypothetical protein complement(1860631..1861650) Clostridium novyi NT 4541030 YP_878709.1 CDS NT01CX_0205 NC_008593.1 1861640 1863424 R hypothetical protein complement(1861640..1863424) Clostridium novyi NT 4541031 YP_878710.1 CDS NT01CX_0206 NC_008593.1 1863437 1864129 R identified by match to protein family HMM TIGR01877; CRISPR-associated Cas5e family protein complement(1863437..1864129) Clostridium novyi NT 4541032 YP_878711.1 CDS NT01CX_0207 NC_008593.1 1866486 1866800 R hypothetical protein complement(1866486..1866800) Clostridium novyi NT 4541033 YP_878712.1 CDS NT01CX_0208 NC_008593.1 1866812 1867072 R hypothetical protein complement(1866812..1867072) Clostridium novyi NT 4541164 YP_878713.1 CDS NT01CX_0209 NC_008593.1 1870715 1871470 R identified by match to protein family HMM PF01841; transglutaminase complement(1870715..1871470) Clostridium novyi NT 4541165 YP_878714.1 CDS NT01CX_0210 NC_008593.1 1871705 1872298 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase family protein complement(1871705..1872298) Clostridium novyi NT 4541166 YP_878715.1 CDS NT01CX_0211 NC_008593.1 1872368 1875046 R identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; S-layer protein complement(1872368..1875046) Clostridium novyi NT 4541167 YP_878716.1 CDS NT01CX_0212 NC_008593.1 1875398 1876453 R hypothetical protein complement(1875398..1876453) Clostridium novyi NT 4541168 YP_878717.1 CDS NT01CX_0213 NC_008593.1 1876650 1878707 R identified by match to protein family HMM PF00149; match to protein family HMM PF01476; match to protein family HMM PF02872; 2',3'-cyclic-nucleotide 2'-phosphodiesterase complement(1876650..1878707) Clostridium novyi NT 4541169 YP_878718.1 CDS NT01CX_0214 NC_008593.1 1878857 1879687 R hypothetical protein complement(1878857..1879687) Clostridium novyi NT 4541170 YP_878719.1 CDS NT01CX_0215 NC_008593.1 1879710 1880921 R identified by match to protein family HMM PF06792; hypothetical protein complement(1879710..1880921) Clostridium novyi NT 4541171 YP_878720.1 CDS NT01CX_0216 NC_008593.1 1881113 1882288 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1881113..1882288) Clostridium novyi NT 4541172 YP_878721.1 CDS NT01CX_0217 NC_008593.1 1882489 1883487 R hypothetical protein complement(1882489..1883487) Clostridium novyi NT 4541173 YP_878722.1 CDS NT01CX_0218 NC_008593.1 1883505 1884197 R hypothetical protein complement(1883505..1884197) Clostridium novyi NT 4541174 YP_878723.1 CDS NT01CX_0219 NC_008593.1 1884500 1885303 R identified by match to protein family HMM PF00106; short-chain dehydrogenase complement(1884500..1885303) Clostridium novyi NT 4541175 YP_878724.1 CDS NT01CX_0220 NC_008593.1 1885424 1887721 R identified by match to protein family HMM PF00004; negative regulator of genetic competence clpC/mecB complement(1885424..1887721) Clostridium novyi NT 4541176 YP_878725.1 CDS NT01CX_0221 NC_008593.1 1887913 1889259 D identified by match to protein family HMM PF00266; aminotransferase 1887913..1889259 Clostridium novyi NT 4541177 YP_878726.1 CDS NT01CX_0222 NC_008593.1 1889308 1889700 R hypothetical protein complement(1889308..1889700) Clostridium novyi NT 4541178 YP_878727.1 CDS NT01CX_0223 NC_008593.1 1889766 1890104 R hypothetical protein complement(1889766..1890104) Clostridium novyi NT 4541179 YP_878728.1 CDS NT01CX_0224 NC_008593.1 1890178 1895178 R identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensory transduction histidine kinase complement(1890178..1895178) Clostridium novyi NT 4541180 YP_878729.1 CDS NT01CX_0225 NC_008593.1 1895306 1896160 R identified by match to protein family HMM PF01734; patatin-like phospholipase complement(1895306..1896160) Clostridium novyi NT 4541181 YP_878730.1 CDS NT01CX_0226 NC_008593.1 1896314 1896562 R spore coat protein CotF complement(1896314..1896562) Clostridium novyi NT 4541182 YP_878731.1 CDS NT01CX_0227 NC_008593.1 1896594 1896779 R hypothetical protein complement(1896594..1896779) Clostridium novyi NT 4540537 YP_878732.1 CDS NT01CX_0228 NC_008593.1 1896876 1897520 R hypothetical protein complement(1896876..1897520) Clostridium novyi NT 4540538 YP_878733.1 CDS NT01CX_0229 NC_008593.1 1897756 1899072 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1897756..1899072 Clostridium novyi NT 4540539 YP_878734.1 CDS NT01CX_0230 NC_008593.1 1899135 1899785 R identified by match to protein family HMM PF00596; L-fuculose phosphate aldolase complement(1899135..1899785) Clostridium novyi NT 4540540 YP_878735.1 CDS NT01CX_0231 NC_008593.1 1899990 1900850 D identified by match to protein family HMM PF00924; mechanosensitive ion channel protein 1899990..1900850 Clostridium novyi NT 4540541 YP_878736.1 CDS uvsE NC_008593.1 1900888 1902138 R identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629; UV damage endonuclease complement(1900888..1902138) Clostridium novyi NT 4540542 YP_878737.1 CDS NT01CX_0233 NC_008593.1 1902237 1903181 D identified by match to protein family HMM PF00892; DMT family permease 1902237..1903181 Clostridium novyi NT 4540543 YP_878738.1 CDS NT01CX_0234 NC_008593.1 1903199 1904581 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1903199..1904581) Clostridium novyi NT 4540544 YP_878739.1 CDS NT01CX_0235 NC_008593.1 1904725 1906155 D identified by match to protein family HMM PF02080; Sodium/hydrogen exchanger family protein 1904725..1906155 Clostridium novyi NT 4540545 YP_878740.1 CDS ldh NC_008593.1 1906872 1907819 D Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1906872..1907819 Clostridium novyi NT 4540546 YP_878741.1 CDS NT01CX_0237 NC_008593.1 1907902 1913316 R identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1907902..1913316) Clostridium novyi NT 4540547 YP_878742.1 CDS NT01CX_0238 NC_008593.1 1913522 1913917 D identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 1913522..1913917 Clostridium novyi NT 4540548 YP_878743.1 CDS NT01CX_0239 NC_008593.1 1914020 1914541 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1914020..1914541) Clostridium novyi NT 4540549 YP_878744.1 CDS NT01CX_0240 NC_008593.1 1914989 1916191 R ABC transporter permease complement(1914989..1916191) Clostridium novyi NT 4540550 YP_878745.1 CDS NT01CX_0241 NC_008593.1 1916191 1917102 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1916191..1917102) Clostridium novyi NT 4540551 YP_878746.1 CDS NT01CX_0242 NC_008593.1 1917118 1918275 R membrane spanning protein complement(1917118..1918275) Clostridium novyi NT 4540552 YP_878747.1 CDS NT01CX_0243 NC_008593.1 1918259 1919152 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1918259..1919152) Clostridium novyi NT 4540553 YP_878748.1 CDS NT01CX_0244 NC_008593.1 1919149 1919529 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1919149..1919529) Clostridium novyi NT 4540554 YP_878749.1 CDS NT01CX_0245 NC_008593.1 1919739 1920677 R identified by match to protein family HMM PF01734; patatin-like phospholipase complement(1919739..1920677) Clostridium novyi NT 4540555 YP_878750.1 CDS thiD NC_008593.1 1921129 1921932 D identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1921129..1921932 Clostridium novyi NT 4540556 YP_878751.1 CDS thiM NC_008593.1 1921961 1922758 D identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694; hydroxyethylthiazole kinase 1921961..1922758 Clostridium novyi NT 4539739 YP_878752.1 CDS thiE NC_008593.1 1922749 1923363 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1922749..1923363 Clostridium novyi NT 4539740 YP_878753.1 CDS NT01CX_0249 NC_008593.1 1923413 1923580 R hypothetical protein complement(1923413..1923580) Clostridium novyi NT 4539741 YP_878755.1 CDS NT01CX_0254 NC_008593.1 1929015 1929794 D hypothetical protein 1929015..1929794 Clostridium novyi NT 4539746 YP_878756.1 CDS NT01CX_0255 NC_008593.1 1929869 1930819 R identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; anaerobic sulfite reductase subunit C complement(1929869..1930819) Clostridium novyi NT 4539747 YP_878757.1 CDS NT01CX_0256 NC_008593.1 1930832 1931623 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(1930832..1931623) Clostridium novyi NT 4539748 YP_878758.1 CDS NT01CX_0257 NC_008593.1 1931623 1932624 R identified by match to protein family HMM PF00037; anaerobic sulfite reductase subunit A complement(1931623..1932624) Clostridium novyi NT 4539749 YP_878759.1 CDS NT01CX_0258 NC_008593.1 1932710 1933390 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator complement(1932710..1933390) Clostridium novyi NT 4539750 YP_878760.1 CDS hemL NC_008593.1 1933384 1934685 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713; glutamate-1-semialdehyde-2,1-aminomutase complement(1933384..1934685) Clostridium novyi NT 4539751 YP_878761.1 CDS hemB NC_008593.1 1934691 1935662 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1934691..1935662) Clostridium novyi NT 4539752 YP_878762.1 CDS NT01CX_0261 NC_008593.1 1935693 1937186 R identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase complement(1935693..1937186) Clostridium novyi NT 4539753 YP_878763.1 CDS hemC NC_008593.1 1937188 1938090 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1937188..1938090) Clostridium novyi NT 4539754 YP_878764.1 CDS NT01CX_0263 NC_008593.1 1938130 1938726 R identified by match to protein family HMM TIGR01470; siroheme synthase complement(1938130..1938726) Clostridium novyi NT 4539755 YP_878765.1 CDS hemA NC_008593.1 1938741 1939976 R identified by match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase complement(1938741..1939976) Clostridium novyi NT 4541260 YP_878766.1 CDS NT01CX_0265 NC_008593.1 1940089 1941003 R identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; anaerobic sulfite reductase subunit C complement(1940089..1941003) Clostridium novyi NT 4541261 YP_878767.1 CDS NT01CX_0266 NC_008593.1 1941256 1942560 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(1941256..1942560) Clostridium novyi NT 4541262 YP_878768.1 CDS NT01CX_0267 NC_008593.1 1942804 1943256 D hypothetical protein 1942804..1943256 Clostridium novyi NT 4541263 YP_878769.1 CDS NT01CX_0268 NC_008593.1 1943526 1944965 R ISBma2, transposase complement(1943526..1944965) Clostridium novyi NT 4541264 YP_878770.1 CDS NT01CX_0269 NC_008593.1 1945208 1945591 D prephenate dehydratase 1945208..1945591 Clostridium novyi NT 4541265 YP_878771.1 CDS NT01CX_0270 NC_008593.1 1945599 1946033 D identified by match to protein family HMM PF01842; prephenate dehydratase 1945599..1946033 Clostridium novyi NT 4541266 YP_878773.1 CDS glnS NC_008593.1 1951434 1953092 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1951434..1953092) Clostridium novyi NT 4541271 YP_878774.1 CDS NT01CX_0276 NC_008593.1 1953440 1953586 R prophage LambdaBa02, lipoprotein complement(1953440..1953586) Clostridium novyi NT 4541272 YP_878775.1 CDS NT01CX_0277 NC_008593.1 1953746 1954399 R identified by match to protein family HMM PF01144; butyrate-acetoacetate CoA-transferase subunit B complement(1953746..1954399) Clostridium novyi NT 4541273 YP_878776.1 CDS NT01CX_0278 NC_008593.1 1954413 1955129 R identified by match to protein family HMM PF01144; acetate CoA-transferase subunit alpha complement(1954413..1955129) Clostridium novyi NT 4541274 YP_878777.1 CDS NT01CX_0279 NC_008593.1 1955680 1956573 D identified by match to protein family HMM PF00892; integral membrane protein 1955680..1956573 Clostridium novyi NT 4541275 YP_878778.1 CDS NT01CX_0280 NC_008593.1 1956619 1957932 R identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase family protein complement(1956619..1957932) Clostridium novyi NT 4539816 YP_878779.1 CDS NT01CX_0281 NC_008593.1 1958129 1959712 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1958129..1959712 Clostridium novyi NT 4539817 YP_878780.1 CDS fusA NC_008593.1 1959848 1961848 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; translation elongation factor G complement(1959848..1961848) Clostridium novyi NT 4539818 YP_878781.1 CDS NT01CX_0283 NC_008593.1 1961915 1965286 R identified by match to protein family HMM PF05193; zinc-dependent peptidase complement(1961915..1965286) Clostridium novyi NT 4539819 YP_878782.1 CDS NT01CX_0284 NC_008593.1 1965551 1966735 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1965551..1966735 Clostridium novyi NT 4539820 YP_878783.1 CDS NT01CX_0285 NC_008593.1 1966805 1968199 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1966805..1968199) Clostridium novyi NT 4539821 YP_878784.1 CDS NT01CX_0286 NC_008593.1 1968256 1970415 R phage infection protein complement(1968256..1970415) Clostridium novyi NT 4539822 YP_878785.1 CDS gldA NC_008593.1 1970760 1971851 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1970760..1971851 Clostridium novyi NT 4539823 YP_878786.1 CDS NT01CX_0288 NC_008593.1 1971959 1972819 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(1971959..1972819) Clostridium novyi NT 4539824 YP_878787.1 CDS NT01CX_0289 NC_008593.1 1972905 1973834 R identified by match to protein family HMM PF00294; tagatose-6-phosphate kinase complement(1972905..1973834) Clostridium novyi NT 4539825 YP_878788.1 CDS NT01CX_0290 NC_008593.1 1973845 1974699 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01858; tagatose bisphosphate family class II aldolase complement(1973845..1974699) Clostridium novyi NT 4539826 YP_878789.1 CDS nagA NC_008593.1 1974724 1975875 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase complement(1974724..1975875) Clostridium novyi NT 4539827 YP_878790.1 CDS NT01CX_0292 NC_008593.1 1975907 1977085 R identified by match to protein family HMM PF01380; phosphosugar isomerase complement(1975907..1977085) Clostridium novyi NT 4539828 YP_878791.1 CDS NT01CX_0293 NC_008593.1 1977179 1977913 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(1977179..1977913) Clostridium novyi NT 4539829 YP_878792.1 CDS NT01CX_0294 NC_008593.1 1978132 1978443 D hypothetical protein 1978132..1978443 Clostridium novyi NT 4539830 YP_878793.1 CDS NT01CX_0295 NC_008593.1 1978472 1979596 D anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 1978472..1979596 Clostridium novyi NT 4539831 YP_878794.1 CDS NT01CX_0296 NC_008593.1 1979682 1980635 R identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD family ATPase complement(1979682..1980635) Clostridium novyi NT 4539832 YP_878795.1 CDS NT01CX_0297 NC_008593.1 1980656 1982107 R identified by match to protein family HMM PF00884; N-acetylgalactosamine 6-sulfate sulfatase complement(1980656..1982107) Clostridium novyi NT 4539833 YP_878796.1 CDS NT01CX_0298 NC_008593.1 1982143 1982274 R hypothetical protein complement(1982143..1982274) Clostridium novyi NT 4539834 YP_878797.1 CDS NT01CX_0299 NC_008593.1 1982276 1983781 R identified by match to protein family HMM PF00474; Sodium:solute symporter family protein complement(1982276..1983781) Clostridium novyi NT 4539835 YP_878798.1 CDS NT01CX_0300 NC_008593.1 1984205 1985719 R identified by match to protein family HMM PF00884; sulfatase complement(1984205..1985719) Clostridium novyi NT 4540947 YP_878799.1 CDS NT01CX_0301 NC_008593.1 1985763 1987493 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK complement(1985763..1987493) Clostridium novyi NT 4540948 YP_878800.1 CDS NT01CX_0302 NC_008593.1 1987900 1988628 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1987900..1988628 Clostridium novyi NT 4540949 YP_878801.1 CDS NT01CX_0303 NC_008593.1 1988625 1988834 R hypothetical protein complement(1988625..1988834) Clostridium novyi NT 4540950 YP_878802.1 CDS NT01CX_0304 NC_008593.1 1989109 1989516 D identified by match to protein family HMM TIGR01909; hypothetical protein 1989109..1989516 Clostridium novyi NT 4540951 YP_878803.1 CDS NT01CX_0305 NC_008593.1 1989560 1991137 R identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; glycine betaine transporter complement(1989560..1991137) Clostridium novyi NT 4540952 YP_878804.1 CDS NT01CX_0306 NC_008593.1 1991342 1991974 D identified by match to protein family HMM PF02080; hypothetical protein 1991342..1991974 Clostridium novyi NT 4540953 YP_878805.1 CDS NT01CX_0307 NC_008593.1 1992062 1993321 R identified by match to protein family HMM PF04143; transporter complement(1992062..1993321) Clostridium novyi NT 4540954 YP_878806.1 CDS NT01CX_0308 NC_008593.1 1993386 1995086 R identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase family protein complement(1993386..1995086) Clostridium novyi NT 4540955 YP_878807.1 CDS NT01CX_0309 NC_008593.1 1995079 1996422 R identified by match to protein family HMM PF01235; sodium:alanine symporter family protein complement(1995079..1996422) Clostridium novyi NT 4540956 YP_878808.1 CDS NT01CX_0310 NC_008593.1 1996699 1997592 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1996699..1997592 Clostridium novyi NT 4540957 YP_878809.1 CDS NT01CX_0311 NC_008593.1 1997639 1998166 R identified by match to protein family HMM PF04143; YeeE/YedE family protein complement(1997639..1998166) Clostridium novyi NT 4540958 YP_878810.1 CDS NT01CX_0312 NC_008593.1 1998183 1998410 R identified by match to protein family HMM PF01206; hypothetical protein complement(1998183..1998410) Clostridium novyi NT 4540959 YP_878811.1 CDS NT01CX_0313 NC_008593.1 1998432 1999112 R identified by match to protein family HMM PF04143; transporter complement(1998432..1999112) Clostridium novyi NT 4540960 YP_878812.1 CDS NT01CX_0314 NC_008593.1 1999300 1999515 R hypothetical protein complement(1999300..1999515) Clostridium novyi NT 4540961 YP_878813.1 CDS NT01CX_0315 NC_008593.1 1999741 1999893 D hypothetical protein 1999741..1999893 Clostridium novyi NT 4540962 YP_878814.1 CDS NT01CX_0316 NC_008593.1 1999949 2001661 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1999949..2001661) Clostridium novyi NT 4540963 YP_878815.1 CDS NT01CX_0317 NC_008593.1 2001975 2002184 R hypothetical protein complement(2001975..2002184) Clostridium novyi NT 4540964 YP_878816.1 CDS NT01CX_0318 NC_008593.1 2002351 2002641 R hypothetical protein complement(2002351..2002641) Clostridium novyi NT 4540965 YP_878817.1 CDS NT01CX_0319 NC_008593.1 2002750 2003163 R hypothetical protein complement(2002750..2003163) Clostridium novyi NT 4539796 YP_878818.1 CDS NT01CX_0320 NC_008593.1 2003174 2004043 R sporulation initiation inhibitor protein soj complement(2003174..2004043) Clostridium novyi NT 4539797 YP_878819.1 CDS NT01CX_0321 NC_008593.1 2004267 2006771 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase complement(2004267..2006771) Clostridium novyi NT 4539798 YP_878820.1 CDS NT01CX_0322 NC_008593.1 2006864 2007175 D hypothetical protein 2006864..2007175 Clostridium novyi NT 4539799 YP_878821.1 CDS NT01CX_0323 NC_008593.1 2007371 2009323 R hypothetical protein complement(2007371..2009323) Clostridium novyi NT 4539800 YP_878822.1 CDS NT01CX_0324 NC_008593.1 2009298 2009462 D hypothetical protein 2009298..2009462 Clostridium novyi NT 4539801 YP_878823.1 CDS NT01CX_0325 NC_008593.1 2009517 2009939 D hypothetical protein 2009517..2009939 Clostridium novyi NT 4539802 YP_878824.1 CDS NT01CX_0326 NC_008593.1 2009996 2011084 D identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2009996..2011084 Clostridium novyi NT 4539803 YP_878825.1 CDS NT01CX_0327 NC_008593.1 2011081 2011761 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2011081..2011761 Clostridium novyi NT 4539804 YP_878826.1 CDS NT01CX_0328 NC_008593.1 2011758 2012942 D identified by match to protein family HMM PF02687; ABC transporter permease 2011758..2012942 Clostridium novyi NT 4539805 YP_878827.1 CDS NT01CX_0329 NC_008593.1 2013167 2013634 D hypothetical protein 2013167..2013634 Clostridium novyi NT 4539806 YP_878828.1 CDS NT01CX_0330 NC_008593.1 2013693 2015090 R hypothetical protein complement(2013693..2015090) Clostridium novyi NT 4539807 YP_878829.1 CDS sacT NC_008593.1 2015297 2016136 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; SACPA operon antiterminator 2015297..2016136 Clostridium novyi NT 4539808 YP_878830.1 CDS NT01CX_0332 NC_008593.1 2016439 2018418 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system transporter subunit IIABC 2016439..2018418 Clostridium novyi NT 4539809 YP_878831.1 CDS NT01CX_0333 NC_008593.1 2018439 2018681 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr (histidine-containing protein) 2018439..2018681 Clostridium novyi NT 4539810 YP_878832.1 CDS ptsI NC_008593.1 2018719 2020422 D identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 2018719..2020422 Clostridium novyi NT 4539811 YP_878833.1 CDS NT01CX_0335 NC_008593.1 2020473 2022659 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2020473..2022659) Clostridium novyi NT 4539812 YP_878834.1 CDS NT01CX_0336 NC_008593.1 2022705 2024393 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; deoxyguanosinetriphosphate triphosphohydrolase complement(2022705..2024393) Clostridium novyi NT 4539813 YP_878835.1 CDS proS NC_008593.1 2024823 2026259 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2024823..2026259 Clostridium novyi NT 4539814 YP_878836.1 CDS NT01CX_0338 NC_008593.1 2026397 2026882 R identified by match to protein family HMM PF06177; citrulline cluster-linked gene complement(2026397..2026882) Clostridium novyi NT 4539815 YP_878837.1 CDS NT01CX_0339 NC_008593.1 2027200 2027766 R identified by match to protein family HMM PF06962; rRNA methylase complement(2027200..2027766) Clostridium novyi NT 4539570 YP_878839.1 CDS NT01CX_0344 NC_008593.1 2033086 2034165 R identified by match to protein family HMM PF00107; 2,3-butanediol dehydrogenase complement(2033086..2034165) Clostridium novyi NT 4539575 YP_878840.1 CDS NT01CX_0345 NC_008593.1 2034360 2036339 R identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; aco operon expression regulatory protein complement(2034360..2036339) Clostridium novyi NT 4539576 YP_878841.1 CDS NT01CX_0349 NC_008593.1 2036993 2037544 R identified by match to protein family HMM PF01661; Appr-1-p processing enzyme family protein complement(2036993..2037544) Clostridium novyi NT 4539580 YP_878842.1 CDS NT01CX_0350 NC_008593.1 2037842 2038495 D identified by match to protein family HMM PF01464; lytic murein transglycosylase 2037842..2038495 Clostridium novyi NT 4539581 YP_878843.1 CDS NT01CX_0351 NC_008593.1 2038606 2039430 R hypothetical protein complement(2038606..2039430) Clostridium novyi NT 4539582 YP_878844.1 CDS NT01CX_0352 NC_008593.1 2039457 2040431 R hypothetical protein complement(2039457..2040431) Clostridium novyi NT 4541344 YP_878845.1 CDS NT01CX_0353 NC_008593.1 2040571 2040738 R hypothetical protein complement(2040571..2040738) Clostridium novyi NT 4541345 YP_878846.1 CDS NT01CX_0354 NC_008593.1 2040892 2042208 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(2040892..2042208) Clostridium novyi NT 4541346 YP_878847.1 CDS fabG NC_008593.1 2042239 2042979 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2042239..2042979) Clostridium novyi NT 4541347 YP_878848.1 CDS cobO NC_008593.1 2043009 2043530 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2043009..2043530) Clostridium novyi NT 4541348 YP_878849.1 CDS trmB NC_008593.1 2043666 2044310 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(2043666..2044310) Clostridium novyi NT 4541349 YP_878850.1 CDS NT01CX_0358 NC_008593.1 2044341 2045015 R identified by match to protein family HMM PF02163; sterol-regulatory element binding protein (SREBP) site 2 protease complement(2044341..2045015) Clostridium novyi NT 4541350 YP_878851.1 CDS NT01CX_0359 NC_008593.1 2045120 2046337 R hypothetical protein complement(2045120..2046337) Clostridium novyi NT 4541351 YP_878852.1 CDS NT01CX_0360 NC_008593.1 2046350 2047207 R hypothetical protein complement(2046350..2047207) Clostridium novyi NT 4541352 YP_878853.1 CDS NT01CX_0361 NC_008593.1 2047522 2048967 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-like transcriptional attenuator complement(2047522..2048967) Clostridium novyi NT 4541353 YP_878854.1 CDS NT01CX_0362 NC_008593.1 2049083 2050459 R identified by match to protein family HMM PF02562; PhoH family protein complement(2049083..2050459) Clostridium novyi NT 4541354 YP_878855.1 CDS NT01CX_0363 NC_008593.1 2050639 2051058 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2050639..2051058 Clostridium novyi NT 4541355 YP_878856.1 CDS NT01CX_0364 NC_008593.1 2051169 2052128 D hypothetical protein 2051169..2052128 Clostridium novyi NT 4541356 YP_878857.1 CDS NT01CX_0365 NC_008593.1 2052388 2053050 R hypothetical protein complement(2052388..2053050) Clostridium novyi NT 4541357 YP_878858.1 CDS NT01CX_0366 NC_008593.1 2053416 2053913 R hypothetical protein complement(2053416..2053913) Clostridium novyi NT 4541358 YP_878859.1 CDS engB NC_008593.1 2054098 2054700 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(2054098..2054700) Clostridium novyi NT 4541359 YP_878860.1 CDS NT01CX_0368 NC_008593.1 2054705 2057020 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La complement(2054705..2057020) Clostridium novyi NT 4541360 YP_878861.1 CDS NT01CX_0369 NC_008593.1 2057128 2058774 R identified by match to protein family HMM PF00004; match to protein family HMM PF05362; Lon-like ATP-dependent protease complement(2057128..2058774) Clostridium novyi NT 4541361 YP_878862.1 CDS clpX NC_008593.1 2059011 2060306 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2059011..2060306) Clostridium novyi NT 4541362 YP_878863.1 CDS clpP NC_008593.1 2060326 2060913 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2060326..2060913) Clostridium novyi NT 4541363 YP_878864.1 CDS tig NC_008593.1 2061084 2062382 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2061084..2062382) Clostridium novyi NT 4540725 YP_878865.1 CDS NT01CX_0373 NC_008593.1 2062553 2063332 R identified by match to protein family HMM PF01261; AP endonuclease complement(2062553..2063332) Clostridium novyi NT 4540726 YP_878866.1 CDS NT01CX_0374 NC_008593.1 2063353 2064171 R Includes: Dihydroneopterinaldolase (DHNA); 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; bifunctional folate synthesis protein complement(2063353..2064171) Clostridium novyi NT 4540727 YP_878867.1 CDS folP NC_008593.1 2064185 2064997 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(2064185..2064997) Clostridium novyi NT 4540728 YP_878868.1 CDS NT01CX_0376 NC_008593.1 2065032 2065511 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD superfamily hydrolase complement(2065032..2065511) Clostridium novyi NT 4540729 YP_878869.1 CDS folE NC_008593.1 2065527 2066084 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2065527..2066084) Clostridium novyi NT 4540730 YP_878870.1 CDS NT01CX_0378 NC_008593.1 2066134 2066943 R identified by match to protein family HMM PF01063; 4-amino-4-deoxychorismate lyase complement(2066134..2066943) Clostridium novyi NT 4540731 YP_878871.1 CDS NT01CX_0379 NC_008593.1 2066965 2068335 R identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; anthranilate synthase component I complement(2066965..2068335) Clostridium novyi NT 4540732 YP_878872.1 CDS NT01CX_0380 NC_008593.1 2068329 2068922 R identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II complement(2068329..2068922) Clostridium novyi NT 4540733 YP_878873.1 CDS NT01CX_0381 NC_008593.1 2069089 2069859 R hypothetical protein complement(2069089..2069859) Clostridium novyi NT 4540734 YP_878874.1 CDS carB NC_008593.1 2070038 2073229 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(2070038..2073229) Clostridium novyi NT 4540735 YP_878875.1 CDS carA NC_008593.1 2073250 2074308 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(2073250..2074308) Clostridium novyi NT 4540736 YP_878876.1 CDS pflC NC_008593.1 2074876 2075808 R identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase complement(2074876..2075808) Clostridium novyi NT 4540737 YP_878877.1 CDS NT01CX_0385 NC_008593.1 2075890 2078301 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase complement(2075890..2078301) Clostridium novyi NT 4540738 YP_878878.1 CDS NT01CX_0386 NC_008593.1 2078534 2079274 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; transcriptional regulator complement(2078534..2079274) Clostridium novyi NT 4540739 YP_878879.1 CDS NT01CX_0387 NC_008593.1 2079284 2080345 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(2079284..2080345) Clostridium novyi NT 4540740 YP_878880.1 CDS lepB NC_008593.1 2080719 2081249 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2080719..2081249 Clostridium novyi NT 4540741 YP_878881.1 CDS NT01CX_0389 NC_008593.1 2081361 2082176 D hypothetical protein 2081361..2082176 Clostridium novyi NT 4540742 YP_878882.1 CDS pyrE NC_008593.1 2082223 2082795 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2082223..2082795) Clostridium novyi NT 4540743 YP_878883.1 CDS NT01CX_0391 NC_008593.1 2082941 2083873 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(2082941..2083873) Clostridium novyi NT 4540595 YP_878884.1 CDS NT01CX_0392 NC_008593.1 2083830 2084564 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(2083830..2084564) Clostridium novyi NT 4540596 YP_878885.1 CDS pyrF NC_008593.1 2084570 2085433 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2084570..2085433) Clostridium novyi NT 4540597 YP_878886.1 CDS NT01CX_0394 NC_008593.1 2085445 2086638 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase complement(2085445..2086638) Clostridium novyi NT 4540598 YP_878887.1 CDS pyrB NC_008593.1 2086639 2087559 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2086639..2087559) Clostridium novyi NT 4540599 YP_878888.1 CDS NT01CX_0396 NC_008593.1 2088065 2089504 R ISBma2, transposase complement(2088065..2089504) Clostridium novyi NT 4540600 YP_878889.1 CDS NT01CX_0397 NC_008593.1 2089945 2091309 R identified by match to protein family HMM PF00158; match to protein family HMM PF00989; transcriptional regulator complement(2089945..2091309) Clostridium novyi NT 4540601 YP_878890.1 CDS rbsC NC_008593.1 2091472 2092413 R identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease complement(2091472..2092413) Clostridium novyi NT 4540602 YP_878891.1 CDS rbsC NC_008593.1 2092416 2093510 R identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease complement(2092416..2093510) Clostridium novyi NT 4540603 YP_878892.1 CDS rbsA NC_008593.1 2093503 2095035 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2093503..2095035) Clostridium novyi NT 4540604 YP_878893.1 CDS NT01CX_0401 NC_008593.1 2095022 2096140 R identified by match to protein family HMM PF02608; Bmp family membrane protein complement(2095022..2096140) Clostridium novyi NT 4540605 YP_878894.1 CDS NT01CX_0402 NC_008593.1 2096173 2096745 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(2096173..2096745) Clostridium novyi NT 4540606 YP_878895.1 CDS NT01CX_0403 NC_008593.1 2097129 2098391 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(2097129..2098391) Clostridium novyi NT 4540607 YP_878896.1 CDS rdgB NC_008593.1 2100410 2101009 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(2100410..2101009) Clostridium novyi NT 4539872 YP_878897.1 CDS hypE NC_008593.1 2101042 2102016 R identified by match to protein family HMM PF02769; hydrogenase maturation factor complement(2101042..2102016) Clostridium novyi NT 4541583 YP_878898.1 CDS NT01CX_0427 NC_008593.1 2102107 2103483 D hypothetical protein 2102107..2103483 Clostridium novyi NT 4541584 YP_878899.1 CDS NT01CX_0428 NC_008593.1 2103480 2105057 R peptide ABC transporter substrate-binding protein complement(2103480..2105057) Clostridium novyi NT 4541585 YP_878900.1 CDS NT01CX_0429 NC_008593.1 2105157 2105558 R hypothetical protein complement(2105157..2105558) Clostridium novyi NT 4541586 YP_878901.1 CDS gatB NC_008593.1 2105775 2107202 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2105775..2107202) Clostridium novyi NT 4541587 YP_878902.1 CDS gatA NC_008593.1 2107221 2108678 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2107221..2108678) Clostridium novyi NT 4541588 YP_878903.1 CDS gatC NC_008593.1 2108695 2108979 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2108695..2108979) Clostridium novyi NT 4541589 YP_878904.1 CDS NT01CX_0433 NC_008593.1 2109080 2110057 R identified by match to protein family HMM TIGR01921; diaminopimelate dehydrogenase complement(2109080..2110057) Clostridium novyi NT 4541590 YP_878905.1 CDS ligA NC_008593.1 2110556 2112550 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2110556..2112550) Clostridium novyi NT 4541591 YP_878906.1 CDS pcrA NC_008593.1 2112649 2114931 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(2112649..2114931) Clostridium novyi NT 4541592 YP_878907.1 CDS NT01CX_0436 NC_008593.1 2114962 2115261 R identified by match to protein family HMM PF01371; trp operon repressor complement(2114962..2115261) Clostridium novyi NT 4541593 YP_878908.1 CDS NT01CX_0437 NC_008593.1 2115742 2116458 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase family protein complement(2115742..2116458) Clostridium novyi NT 4541594 YP_878909.1 CDS NT01CX_0438 NC_008593.1 2116544 2118619 R identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein complement(2116544..2118619) Clostridium novyi NT 4541595 YP_878910.1 CDS pulA NC_008593.1 2118799 2120949 D identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 2118799..2120949 Clostridium novyi NT 4541596 YP_878911.1 CDS NT01CX_0440 NC_008593.1 2120958 2121407 R identified by match to protein family HMM PF02639; hypothetical protein complement(2120958..2121407) Clostridium novyi NT 4541597 YP_878912.1 CDS pgi NC_008593.1 2121529 2122881 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2121529..2122881) Clostridium novyi NT 4541598 YP_878913.1 CDS NT01CX_0442 NC_008593.1 2122979 2123236 R hypothetical protein complement(2122979..2123236) Clostridium novyi NT 4541599 YP_878914.1 CDS NT01CX_0443 NC_008593.1 2123103 2123969 D similar to yxkH B. subtilis; identified by match to protein family HMM PF01522; xylanase/chitin deacetilase 2123103..2123969 Clostridium novyi NT 4541600 YP_878915.1 CDS NT01CX_0444 NC_008593.1 2123990 2124655 D identified by match to protein family HMM PF00515; hypothetical protein 2123990..2124655 Clostridium novyi NT 4541601 YP_878916.1 CDS NT01CX_0445 NC_008593.1 2124867 2126111 D identified by match to protein family HMM PF03572; hypothetical protein 2124867..2126111 Clostridium novyi NT 4541602 YP_878917.1 CDS NT01CX_0446 NC_008593.1 2126241 2126882 D identified by match to protein family HMM PF01126; heme oxygenase 2126241..2126882 Clostridium novyi NT 4539893 YP_878918.1 CDS NT01CX_0447 NC_008593.1 2126921 2127226 R hypothetical protein complement(2126921..2127226) Clostridium novyi NT 4539894 YP_878919.1 CDS NT01CX_0448 NC_008593.1 2127537 2128976 R ISBma2, transposase complement(2127537..2128976) Clostridium novyi NT 4539895 YP_878920.1 CDS NT01CX_0449 NC_008593.1 2129147 2129956 R identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; cof family hydrolase complement(2129147..2129956) Clostridium novyi NT 4539896 YP_878921.1 CDS NT01CX_0450 NC_008593.1 2130025 2130483 R hypothetical protein complement(2130025..2130483) Clostridium novyi NT 4539897 YP_878922.1 CDS NT01CX_0451 NC_008593.1 2131091 2131729 D identified by match to protein family HMM PF01381; transcriptional regulator 2131091..2131729 Clostridium novyi NT 4539898 YP_878923.1 CDS NT01CX_0452 NC_008593.1 2132444 2133877 R hypothetical protein complement(2132444..2133877) Clostridium novyi NT 4539899 YP_878924.1 CDS NT01CX_0453 NC_008593.1 2134748 2135380 R phage integrase family site specific recombinase complement(2134748..2135380) Clostridium novyi NT 4539900 YP_878925.1 CDS NT01CX_0454 NC_008593.1 2135352 2135621 R hypothetical protein complement(2135352..2135621) Clostridium novyi NT 4539901 YP_878926.1 CDS NT01CX_0455 NC_008593.1 2135614 2135823 R hypothetical protein complement(2135614..2135823) Clostridium novyi NT 4539902 YP_878927.1 CDS NT01CX_0456 NC_008593.1 2136400 2136525 R hypothetical protein complement(2136400..2136525) Clostridium novyi NT 4539903 YP_878928.1 CDS NT01CX_0457 NC_008593.1 2136759 2138324 R ATP-dependent Clp protease, ATPase subunit complement(2136759..2138324) Clostridium novyi NT 4539904 YP_878929.1 CDS NT01CX_0458 NC_008593.1 2138326 2139453 R hypothetical protein complement(2138326..2139453) Clostridium novyi NT 4539905 YP_878930.1 CDS guaA NC_008593.1 2139825 2141363 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2139825..2141363) Clostridium novyi NT 4539906 YP_878931.1 CDS guaB NC_008593.1 2141576 2143030 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2141576..2143030) Clostridium novyi NT 4539907 YP_878932.1 CDS NT01CX_0461 NC_008593.1 2143408 2144145 D identified by match to protein family HMM PF01171; hypothetical protein 2143408..2144145 Clostridium novyi NT 4539908 YP_878933.1 CDS groEL NC_008593.1 2144215 2145846 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2144215..2145846) Clostridium novyi NT 4539909 YP_878934.1 CDS groES NC_008593.1 2145951 2146235 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2145951..2146235) Clostridium novyi NT 4539910 YP_878935.1 CDS NT01CX_0464 NC_008593.1 2146548 2148032 R identified by match to protein family HMM PF00037; match to protein family HMM PF02906; Fe-hydrogenase large subunit family protein complement(2146548..2148032) Clostridium novyi NT 4539911 YP_878936.1 CDS NT01CX_0465 NC_008593.1 2148211 2149089 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; 8-oxoguanine DNA glycosylase complement(2148211..2149089) Clostridium novyi NT 4541403 YP_878937.1 CDS gltA NC_008593.1 2149332 2150720 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(2149332..2150720) Clostridium novyi NT 4541404 YP_878938.1 CDS NT01CX_0467 NC_008593.1 2150720 2151628 R identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha complement(2150720..2151628) Clostridium novyi NT 4541405 YP_878939.1 CDS NT01CX_0468 NC_008593.1 2151823 2152989 R identified by match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase complement(2151823..2152989) Clostridium novyi NT 4541406 YP_878940.1 CDS NT01CX_0469 NC_008593.1 2153232 2155127 R identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; Signal-transduction and transcriptional-control protein complement(2153232..2155127) Clostridium novyi NT 4541407 YP_878941.1 CDS bhbD NC_008593.1 2155289 2156137 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(2155289..2156137) Clostridium novyi NT 4541408 YP_878942.1 CDS etfA NC_008593.1 2156242 2157249 R identified by match to protein family HMM PF00766; electron transfer flavoprotein subunit alpha complement(2156242..2157249) Clostridium novyi NT 4541409 YP_878943.1 CDS NT01CX_0472 NC_008593.1 2157281 2158060 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(2157281..2158060) Clostridium novyi NT 4541410 YP_878944.1 CDS NT01CX_0473 NC_008593.1 2158088 2159227 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(2158088..2159227) Clostridium novyi NT 4541411 YP_878945.1 CDS NT01CX_0474 NC_008593.1 2159257 2160042 R catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase complement(2159257..2160042) Clostridium novyi NT 4541412 YP_878946.1 CDS NT01CX_0475 NC_008593.1 2160245 2160877 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2160245..2160877) Clostridium novyi NT 4541413 YP_878947.1 CDS NT01CX_0476 NC_008593.1 2161271 2163184 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2161271..2163184 Clostridium novyi NT 4541414 YP_878948.1 CDS NT01CX_0477 NC_008593.1 2163246 2164514 R identified by match to protein family HMM PF00496; peptide ABC transporter oligopeptide-binding protein complement(2163246..2164514) Clostridium novyi NT 4541415 YP_878949.1 CDS NT01CX_0478 NC_008593.1 2164702 2165727 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(2164702..2165727) Clostridium novyi NT 4541416 YP_878950.1 CDS NT01CX_0479 NC_008593.1 2165819 2166472 D identified by match to protein family HMM PF05866; hypothetical protein 2165819..2166472 Clostridium novyi NT 4541417 YP_878951.1 CDS NT01CX_0480 NC_008593.1 2166493 2167497 R identified by match to protein family HMM PF00070; sarcosine oxidase alpha subunit complement(2166493..2167497) Clostridium novyi NT 4541418 YP_878952.1 CDS NT01CX_0481 NC_008593.1 2167591 2168121 R lipoprotein complement(2167591..2168121) Clostridium novyi NT 4541419 YP_878953.1 CDS NT01CX_0482 NC_008593.1 2168324 2169220 D identified by match to protein family HMM PF01297; periplasmic solute binding protein 2168324..2169220 Clostridium novyi NT 4541420 YP_878954.1 CDS NT01CX_0483 NC_008593.1 2169279 2169800 R identified by match to protein family HMM PF02417; chromate transporter complement(2169279..2169800) Clostridium novyi NT 4541421 YP_878955.1 CDS NT01CX_0484 NC_008593.1 2169787 2170269 R identified by match to protein family HMM PF02417; chromate transporter complement(2169787..2170269) Clostridium novyi NT 4541422 YP_878956.1 CDS NT01CX_0485 NC_008593.1 2170489 2172207 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2170489..2172207) Clostridium novyi NT 4541545 YP_878957.1 CDS NT01CX_0486 NC_008593.1 2172499 2173641 R identified by match to protein family HMM PF00465; alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase complement(2172499..2173641) Clostridium novyi NT 4541546 YP_878958.1 CDS NT01CX_0487 NC_008593.1 2173677 2173955 R identified by match to protein family HMM PF03319; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(2173677..2173955) Clostridium novyi NT 4541547 YP_878959.1 CDS NT01CX_0488 NC_008593.1 2173972 2175435 R acetaldehyde dehydrogenase / alcohol dehydrogenase-like protein complement(2173972..2175435) Clostridium novyi NT 4541548 YP_878960.1 CDS NT01CX_0489 NC_008593.1 2175472 2176272 R phosphopantothenate--cysteine ligase complement(2175472..2176272) Clostridium novyi NT 4541549 YP_878961.1 CDS NT01CX_0490 NC_008593.1 2176285 2177127 R ethanolamine utilization protein eutJ complement(2176285..2177127) Clostridium novyi NT 4541550 YP_878962.1 CDS NT01CX_0491 NC_008593.1 2177124 2177774 R identified by match to protein family HMM PF06130; hypothetical protein complement(2177124..2177774) Clostridium novyi NT 4541551 YP_878963.1 CDS NT01CX_0492 NC_008593.1 2177793 2178368 R similar to Salmonella typhimurium PduA protein; identified by match to protein family HMM PF00936; PduA protein-like protein complement(2177793..2178368) Clostridium novyi NT 4541552 YP_878964.1 CDS NT01CX_0493 NC_008593.1 2178472 2179329 R similar to Salmonella typhimurium PduB protein; identified by match to protein family HMM PF06000; PduB protein-like protein complement(2178472..2179329) Clostridium novyi NT 4541553 YP_878965.1 CDS NT01CX_0494 NC_008593.1 2179350 2179631 R identified by match to protein family HMM PF00936; microcompartment protein complement(2179350..2179631) Clostridium novyi NT 4541554 YP_878966.1 CDS NT01CX_0495 NC_008593.1 2179806 2181017 D identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 2179806..2181017 Clostridium novyi NT 4541555 YP_878967.1 CDS NT01CX_0496 NC_008593.1 2181038 2181775 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; two-component response regulator 2181038..2181775 Clostridium novyi NT 4541556 YP_878968.1 CDS pflC NC_008593.1 2181817 2182716 R identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase complement(2181817..2182716) Clostridium novyi NT 4541557 YP_878969.1 CDS NT01CX_0498 NC_008593.1 2182788 2185340 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase complement(2182788..2185340) Clostridium novyi NT 4541558 YP_878970.1 CDS NT01CX_0499 NC_008593.1 2185599 2187038 R ISBma2, transposase complement(2185599..2187038) Clostridium novyi NT 4541559 YP_878971.1 CDS NT01CX_0501 NC_008593.1 2187436 2188668 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; fused HD-GYP/HD-hydrolase domain-containing protein 2187436..2188668 Clostridium novyi NT 4541561 YP_878972.1 CDS NT01CX_0502 NC_008593.1 2188832 2189290 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 2188832..2189290 Clostridium novyi NT 4541562 YP_878973.1 CDS NT01CX_0503 NC_008593.1 2189287 2190003 D identified by match to protein family HMM PF00814; glycoprotease family protein 2189287..2190003 Clostridium novyi NT 4541147 YP_878974.1 CDS rimI NC_008593.1 2189996 2190451 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2189996..2190451 Clostridium novyi NT 4541148 YP_878975.1 CDS NT01CX_0505 NC_008593.1 2190517 2191158 R hypothetical protein complement(2190517..2191158) Clostridium novyi NT 4541149 YP_878976.1 CDS NT01CX_0506 NC_008593.1 2191444 2193600 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(2191444..2193600) Clostridium novyi NT 4541150 YP_878977.1 CDS NT01CX_0507 NC_008593.1 2193801 2194004 R hypothetical protein complement(2193801..2194004) Clostridium novyi NT 4541151 YP_878978.1 CDS prfB NC_008593.1 2194655 2195668 R catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 complement(2194655..2195668) Clostridium novyi NT 4541152 YP_878979.1 CDS secA NC_008593.1 2195830 2198334 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2195830..2198334) Clostridium novyi NT 4541153 YP_878980.1 CDS NT01CX_0510 NC_008593.1 2198546 2198689 R hypothetical protein complement(2198546..2198689) Clostridium novyi NT 4541154 YP_878981.1 CDS NT01CX_0511 NC_008593.1 2198568 2199341 D hypothetical protein 2198568..2199341 Clostridium novyi NT 4541155 YP_878982.1 CDS yfiA NC_008593.1 2199370 2199906 R identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein complement(2199370..2199906) Clostridium novyi NT 4541156 YP_878983.1 CDS comF NC_008593.1 2200163 2200843 R competence protein F complement(2200163..2200843) Clostridium novyi NT 4541157 YP_878984.1 CDS NT01CX_0514 NC_008593.1 2200816 2201838 R hypothetical protein complement(2200816..2201838) Clostridium novyi NT 4541158 YP_878985.1 CDS NT01CX_0515 NC_008593.1 2201862 2204069 R identified by match to protein family HMM TIGR01448; recombinase D complement(2201862..2204069) Clostridium novyi NT 4541159 YP_878986.1 CDS metK NC_008593.1 2204190 2205365 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2204190..2205365) Clostridium novyi NT 4541160 YP_878987.1 CDS NT01CX_0521 NC_008593.1 2206333 2207052 D identified by match to protein family HMM PF01171; hypothetical protein 2206333..2207052 Clostridium novyi NT 4540520 YP_878988.1 CDS NT01CX_0522 NC_008593.1 2207148 2207699 D identified by match to protein family HMM PF06866; hypothetical protein 2207148..2207699 Clostridium novyi NT 4540521 YP_878989.1 CDS NT01CX_0523 NC_008593.1 2207756 2208787 R identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl complement(2207756..2208787) Clostridium novyi NT 4540522 YP_878990.1 CDS spoIIID NC_008593.1 2208923 2209177 R stage III sporulation protein D complement(2208923..2209177) Clostridium novyi NT 4540523 YP_878991.1 CDS NT01CX_0525 NC_008593.1 2209314 2210078 R identified by match to protein family HMM PF01551; membrane-associated protein complement(2209314..2210078) Clostridium novyi NT 4540524 YP_878992.1 CDS NT01CX_0526 NC_008593.1 2210254 2211282 R sporulation protein SpoIID complement(2210254..2211282) Clostridium novyi NT 4540525 YP_878993.1 CDS murA NC_008593.1 2211445 2212704 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2211445..2212704) Clostridium novyi NT 4540526 YP_878994.1 CDS NT01CX_0528 NC_008593.1 2212735 2213436 R hypothetical protein complement(2212735..2213436) Clostridium novyi NT 4540527 YP_878995.1 CDS atpC NC_008593.1 2213596 2213991 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(2213596..2213991) Clostridium novyi NT 4540528 YP_878996.1 CDS atpD NC_008593.1 2214009 2215403 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2214009..2215403) Clostridium novyi NT 4540529 YP_878997.1 CDS atpG NC_008593.1 2215416 2216273 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2215416..2216273) Clostridium novyi NT 4540530 YP_878998.1 CDS atpA NC_008593.1 2216303 2217811 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2216303..2217811) Clostridium novyi NT 4540531 YP_878999.1 CDS atpH NC_008593.1 2217833 2218369 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2217833..2218369) Clostridium novyi NT 4540532 YP_879000.1 CDS atpF NC_008593.1 2218372 2218851 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B complement(2218372..2218851) Clostridium novyi NT 4540533 YP_879001.1 CDS NT01CX_0535 NC_008593.1 2218898 2219152 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2218898..2219152) Clostridium novyi NT 4540534 YP_879002.1 CDS atpB NC_008593.1 2219198 2219884 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2219198..2219884) Clostridium novyi NT 4540535 YP_879003.1 CDS NT01CX_0537 NC_008593.1 2219908 2220276 R membrane protein in FoF1-type ATP synthase complement(2219908..2220276) Clostridium novyi NT 4540536 YP_879004.1 CDS NT01CX_0538 NC_008593.1 2220728 2221906 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2220728..2221906) Clostridium novyi NT 4540168 YP_879005.1 CDS NT01CX_0539 NC_008593.1 2222072 2223193 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase complement(2222072..2223193) Clostridium novyi NT 4540169 YP_879006.1 CDS NT01CX_0540 NC_008593.1 2223215 2224243 R identified by match to protein family HMM PF00953; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase complement(2223215..2224243) Clostridium novyi NT 4540170 YP_879007.1 CDS NT01CX_0541 NC_008593.1 2224268 2224756 R identified by match to protein family HMM PF00383; cytidine and deoxycytidylate deaminase family protein complement(2224268..2224756) Clostridium novyi NT 4540171 YP_879008.1 CDS upp NC_008593.1 2225000 2225629 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2225000..2225629) Clostridium novyi NT 4540172 YP_879009.1 CDS rpiB NC_008593.1 2225689 2226138 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(2225689..2226138) Clostridium novyi NT 4540173 YP_879010.1 CDS NT01CX_0544 NC_008593.1 2226190 2226642 R identified by match to protein family HMM PF01451; protein-tyrosine-phosphatase complement(2226190..2226642) Clostridium novyi NT 4540174 YP_879011.1 CDS NT01CX_0545 NC_008593.1 2226672 2227724 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(2226672..2227724) Clostridium novyi NT 4540175 YP_879012.1 CDS NT01CX_0546 NC_008593.1 2227776 2228507 R identified by match to protein family HMM PF02535; zinc uptake transporter complement(2227776..2228507) Clostridium novyi NT 4540176 YP_879013.1 CDS NT01CX_0547 NC_008593.1 2228562 2229134 R hypothetical protein complement(2228562..2229134) Clostridium novyi NT 4540177 YP_879014.1 CDS prfA NC_008593.1 2229169 2230242 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2229169..2230242) Clostridium novyi NT 4540178 YP_879015.1 CDS NT01CX_0549 NC_008593.1 2230371 2231225 R identified by match to protein family HMM TIGR00536; methyltransferase complement(2230371..2231225) Clostridium novyi NT 4540179 YP_879016.1 CDS NT01CX_0550 NC_008593.1 2231260 2232279 R identified by match to protein family HMM PF07136; hypothetical protein complement(2231260..2232279) Clostridium novyi NT 4540180 YP_879017.1 CDS NT01CX_0551 NC_008593.1 2232319 2232915 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2232319..2232915) Clostridium novyi NT 4540181 YP_879018.1 CDS rpmE NC_008593.1 2233108 2233317 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2233108..2233317 Clostridium novyi NT 4540182 YP_879019.1 CDS rho NC_008593.1 2233342 2234769 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2233342..2234769) Clostridium novyi NT 4540183 YP_879020.1 CDS NT01CX_0554 NC_008593.1 2234960 2235304 R hypothetical protein complement(2234960..2235304) Clostridium novyi NT 4540184 YP_879021.1 CDS pyrG NC_008593.1 2235487 2237088 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2235487..2237088) Clostridium novyi NT 4540185 YP_879022.1 CDS NT01CX_0556 NC_008593.1 2237286 2237585 R hypothetical protein complement(2237286..2237585) Clostridium novyi NT 4540186 YP_879023.1 CDS NT01CX_0557 NC_008593.1 2237699 2238115 R hypothetical protein complement(2237699..2238115) Clostridium novyi NT 4540187 YP_879024.1 CDS NT01CX_0558 NC_008593.1 2238131 2239114 R hypothetical protein complement(2238131..2239114) Clostridium novyi NT 4541384 YP_879025.1 CDS ddl NC_008593.1 2239140 2240171 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2239140..2240171) Clostridium novyi NT 4541385 YP_879026.1 CDS NT01CX_0560 NC_008593.1 2240384 2241742 R identified by match to protein family HMM PF03413; thermolysin metallopeptidase, propeptide complement(2240384..2241742) Clostridium novyi NT 4541386 YP_879027.1 CDS NT01CX_0561 NC_008593.1 2241828 2242463 R stage II sporulation protein R complement(2241828..2242463) Clostridium novyi NT 4541387 YP_879028.1 CDS NT01CX_0562 NC_008593.1 2242633 2243823 R identified by match to protein family HMM PF05504; spore germination protein complement(2242633..2243823) Clostridium novyi NT 4541388 YP_879029.1 CDS NT01CX_0563 NC_008593.1 2243813 2244913 R identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein complement(2243813..2244913) Clostridium novyi NT 4541389 YP_879030.1 CDS NT01CX_0564 NC_008593.1 2244935 2246404 R similar to Bacillus/Clostridium; identified by match to protein family HMM PF03323; GerA spore germination protein complement(2244935..2246404) Clostridium novyi NT 4541390 YP_879031.1 CDS NT01CX_0565 NC_008593.1 2246422 2246619 R hypothetical protein complement(2246422..2246619) Clostridium novyi NT 4541391 YP_879032.1 CDS ipk NC_008593.1 2246711 2247553 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2246711..2247553) Clostridium novyi NT 4541392 YP_879033.1 CDS NT01CX_0567 NC_008593.1 2247658 2249211 R identified by match to protein family HMM PF01476; LysM domain-containing protein complement(2247658..2249211) Clostridium novyi NT 4541393 YP_879034.1 CDS NT01CX_0568 NC_008593.1 2249320 2249565 R identified by match to protein family HMM PF06257; VEG protein-like protein complement(2249320..2249565) Clostridium novyi NT 4541394 YP_879035.1 CDS NT01CX_0569 NC_008593.1 2249789 2250682 R identified by match to protein family HMM PF05582; hypothetical protein complement(2249789..2250682) Clostridium novyi NT 4541395 YP_879036.1 CDS NT01CX_0570 NC_008593.1 2250871 2251881 R spore coat protein complement(2250871..2251881) Clostridium novyi NT 4541396 YP_879037.1 CDS NT01CX_0571 NC_008593.1 2252009 2253130 D identified by match to protein family HMM PF00534; mannosyltransferase 2252009..2253130 Clostridium novyi NT 4541397 YP_879038.1 CDS cysK NC_008593.1 2253182 2254108 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(2253182..2254108) Clostridium novyi NT 4541398 YP_879039.1 CDS cbiK NC_008593.1 2254279 2255070 R identified by match to protein family HMM PF06180; anaerobic cobalt chelatase complement(2254279..2255070) Clostridium novyi NT 4541399 YP_879040.1 CDS cobK NC_008593.1 2255054 2255833 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(2255054..2255833) Clostridium novyi NT 4541400 YP_879041.1 CDS cobJ NC_008593.1 2255830 2256576 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(2255830..2256576) Clostridium novyi NT 4541401 YP_879042.1 CDS cbiG NC_008593.1 2256626 2257660 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(2256626..2257660) Clostridium novyi NT 4541402 YP_879043.1 CDS cobM NC_008593.1 2257669 2258406 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(2257669..2258406) Clostridium novyi NT 4541295 YP_879044.1 CDS cobI NC_008593.1 2258417 2259082 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2258417..2259082) Clostridium novyi NT 4541296 YP_879045.1 CDS cbiT NC_008593.1 2259084 2259662 R precorrin-6B methylase/decarboxylase cbiT/cbiE complement(2259084..2259662) Clostridium novyi NT 4541297 YP_879046.1 CDS cbiE NC_008593.1 2259659 2260279 R identified by match to protein family HMM PF00590; precorrin-6B methylase/decarboxylase cbiT/cbiE complement(2259659..2260279) Clostridium novyi NT 4541298 YP_879047.1 CDS cbiD NC_008593.1 2260298 2261374 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2260298..2261374) Clostridium novyi NT 4541299 YP_879048.1 CDS cbiC NC_008593.1 2261396 2262019 R catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase complement(2261396..2262019) Clostridium novyi NT 4541300 YP_879049.1 CDS cobB NC_008593.1 2262012 2263367 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2262012..2263367) Clostridium novyi NT 4541301 YP_879050.1 CDS NT01CX_0584 NC_008593.1 2263713 2264684 R spore coat protein complement(2263713..2264684) Clostridium novyi NT 4541302 YP_879051.1 CDS NT01CX_0585 NC_008593.1 2264725 2265537 R spore coat protein complement(2264725..2265537) Clostridium novyi NT 4541303 YP_879052.1 CDS NT01CX_0586 NC_008593.1 2265569 2266582 R spore coat protein complement(2265569..2266582) Clostridium novyi NT 4541304 YP_879053.1 CDS NT01CX_0587 NC_008593.1 2266732 2267844 D identified by match to protein family HMM PF00534; mannosyltransferase 2266732..2267844 Clostridium novyi NT 4541305 YP_879054.1 CDS NT01CX_0588 NC_008593.1 2267888 2268934 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2267888..2268934) Clostridium novyi NT 4541306 YP_879055.1 CDS NT01CX_0589 NC_008593.1 2269102 2269827 R identified by match to protein family HMM PF00037; ferredoxin complement(2269102..2269827) Clostridium novyi NT 4541307 YP_879056.1 CDS NT01CX_0590 NC_008593.1 2269962 2270645 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing transcriptional regulator 2269962..2270645 Clostridium novyi NT 4541308 YP_879057.1 CDS NT01CX_0591 NC_008593.1 2270652 2272301 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2270652..2272301) Clostridium novyi NT 4541309 YP_879058.1 CDS NT01CX_0592 NC_008593.1 2272424 2273887 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2272424..2273887) Clostridium novyi NT 4541310 YP_879059.1 CDS NT01CX_0593 NC_008593.1 2274157 2276895 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 2274157..2276895 Clostridium novyi NT 4541311 YP_879060.1 CDS NT01CX_0594 NC_008593.1 2276998 2278023 D identified by match to protein family HMM PF01476; match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 2276998..2278023 Clostridium novyi NT 4541312 YP_879061.1 CDS NT01CX_0595 NC_008593.1 2278078 2278401 R small, acid-soluble spore protein gamma-type (SASP) complement(2278078..2278401) Clostridium novyi NT 4541313 YP_879062.1 CDS NT01CX_0596 NC_008593.1 2278427 2278519 R hypothetical protein complement(2278427..2278519) Clostridium novyi NT 4541314 YP_879063.1 CDS NT01CX_0597 NC_008593.1 2278546 2279322 R identified by match to protein family HMM PF00483; mannose-6-phosphate isomerase complement(2278546..2279322) Clostridium novyi NT 4540463 YP_879064.1 CDS NT01CX_0598 NC_008593.1 2279477 2281051 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase complement(2279477..2281051) Clostridium novyi NT 4540464 YP_879065.1 CDS NT01CX_0599 NC_008593.1 2281056 2281226 R hypothetical protein complement(2281056..2281226) Clostridium novyi NT 4540465 YP_879066.1 CDS NT01CX_0600 NC_008593.1 2281283 2281843 R identified by match to protein family HMM PF00881; nitroreductase family protein complement(2281283..2281843) Clostridium novyi NT 4540466 YP_879067.1 CDS serA NC_008593.1 2281896 2282849 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer-specific 2-hydroxyacid dehydrogenase complement(2281896..2282849) Clostridium novyi NT 4540467 YP_879068.1 CDS NT01CX_0602 NC_008593.1 2283022 2283285 R mannose-1-phosphate guanylyltransferase complement(2283022..2283285) Clostridium novyi NT 4540468 YP_879069.1 CDS NT01CX_0603 NC_008593.1 2283455 2284636 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2283455..2284636) Clostridium novyi NT 4540469 YP_879070.1 CDS bhbD NC_008593.1 2284711 2285556 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(2284711..2285556) Clostridium novyi NT 4540470 YP_879071.1 CDS glpK NC_008593.1 2285922 2287505 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase complement(2285922..2287505) Clostridium novyi NT 4540471 YP_879072.1 CDS NT01CX_0606 NC_008593.1 2287512 2288222 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(2287512..2288222) Clostridium novyi NT 4540472 YP_879073.1 CDS NT01CX_0607 NC_008593.1 2288423 2290327 R identified by match to protein family HMM PF00015; match to protein family HMM TIGR01098; methyl-accepting chemotaxis protein complement(2288423..2290327) Clostridium novyi NT 4540473 YP_879074.1 CDS glpK NC_008593.1 2290408 2291904 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase complement(2290408..2291904) Clostridium novyi NT 4540474 YP_879075.1 CDS NT01CX_0609 NC_008593.1 2292123 2292839 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(2292123..2292839) Clostridium novyi NT 4540475 YP_879076.1 CDS NT01CX_0610 NC_008593.1 2293137 2293508 R hypothetical protein complement(2293137..2293508) Clostridium novyi NT 4540476 YP_879077.1 CDS NT01CX_0611 NC_008593.1 2293515 2294774 R identified by match to protein family HMM PF00070; sarcosine oxidase alpha subunit complement(2293515..2294774) Clostridium novyi NT 4540477 YP_879078.1 CDS NT01CX_0612 NC_008593.1 2294825 2296258 R identified by match to protein family HMM PF01266; match to protein family HMM PF04324; glycerol-3-phosphate dehydrogenase complement(2294825..2296258) Clostridium novyi NT 4540478 YP_879079.1 CDS NT01CX_0613 NC_008593.1 2296490 2297056 R identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein complement(2296490..2297056) Clostridium novyi NT 4540479 YP_879080.1 CDS NT01CX_0614 NC_008593.1 2297335 2297838 R hypothetical protein complement(2297335..2297838) Clostridium novyi NT 4540480 YP_879081.1 CDS NT01CX_0615 NC_008593.1 2298102 2299352 R identified by match to protein family HMM PF00557; match to protein family HMM PF05195; Xaa-Pro aminopeptidase complement(2298102..2299352) Clostridium novyi NT 4540481 YP_879082.1 CDS NT01CX_0616 NC_008593.1 2299494 2300201 D catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 2299494..2300201 Clostridium novyi NT 4540670 YP_879083.1 CDS cspB NC_008593.1 2300277 2300477 R identified by match to protein family HMM PF00313; cold shock protein cspB complement(2300277..2300477) Clostridium novyi NT 4540671 YP_879084.1 CDS NT01CX_0618 NC_008593.1 2301062 2301229 R hypothetical protein complement(2301062..2301229) Clostridium novyi NT 4540672 YP_879085.1 CDS NT01CX_0619 NC_008593.1 2301321 2301476 R hypothetical protein complement(2301321..2301476) Clostridium novyi NT 4540673 YP_879086.1 CDS aroK NC_008593.1 2301924 2302418 R identified by match to protein family HMM PF01202; shikimate kinase complement(2301924..2302418) Clostridium novyi NT 4540674 YP_879087.1 CDS aroE NC_008593.1 2302433 2303245 R identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(2302433..2303245) Clostridium novyi NT 4540675 YP_879088.1 CDS NT01CX_0622 NC_008593.1 2303257 2303529 R identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; chorismate mutase complement(2303257..2303529) Clostridium novyi NT 4540676 YP_879089.1 CDS aroC NC_008593.1 2303545 2304615 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2303545..2304615) Clostridium novyi NT 4540677 YP_879090.1 CDS aroA NC_008593.1 2304593 2305900 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2304593..2305900) Clostridium novyi NT 4540678 YP_879091.1 CDS aroB NC_008593.1 2305917 2306978 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(2305917..2306978) Clostridium novyi NT 4540679 YP_879092.1 CDS NT01CX_0626 NC_008593.1 2306975 2307829 R identified by match to protein family HMM PF02153; prephenate dehydrogenase complement(2306975..2307829) Clostridium novyi NT 4540680 YP_879093.1 CDS NT01CX_0627 NC_008593.1 2307858 2308871 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(2307858..2308871) Clostridium novyi NT 4540681 YP_879094.1 CDS NT01CX_0628 NC_008593.1 2309802 2311388 R identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/carnitine/choline ABC transporter complement(2309802..2311388) Clostridium novyi NT 4540682 YP_879095.1 CDS NT01CX_0629 NC_008593.1 2311388 2312524 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/carnitine/choline transport ATP-binding protein complement(2311388..2312524) Clostridium novyi NT 4540683 YP_879096.1 CDS NT01CX_0630 NC_008593.1 2312789 2314063 R lipase complement(2312789..2314063) Clostridium novyi NT 4540684 YP_879097.1 CDS NT01CX_0631 NC_008593.1 2314227 2315174 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; activator of 2-hydroxyglutaryl-CoA dehydratase complement(2314227..2315174) Clostridium novyi NT 4540685 YP_879098.1 CDS NT01CX_0632 NC_008593.1 2315155 2316252 R hypothetical protein complement(2315155..2316252) Clostridium novyi NT 4540686 YP_879099.1 CDS NT01CX_0633 NC_008593.1 2316224 2317144 R hypothetical protein complement(2316224..2317144) Clostridium novyi NT 4540687 YP_879100.1 CDS NT01CX_0634 NC_008593.1 2317302 2318690 R identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate transporter complement(2317302..2318690) Clostridium novyi NT 4540688 YP_879101.1 CDS pdxA NC_008593.1 2318844 2319842 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(2318844..2319842) Clostridium novyi NT 4540689 YP_879102.1 CDS NT01CX_0636 NC_008593.1 2319855 2321186 R hypothetical protein complement(2319855..2321186) Clostridium novyi NT 4540247 YP_879103.1 CDS NT01CX_0637 NC_008593.1 2321205 2321963 R identified by match to protein family HMM PF00455; DeoR family transcriptional regulator complement(2321205..2321963) Clostridium novyi NT 4540248 YP_879104.1 CDS NT01CX_0638 NC_008593.1 2322167 2323015 R identified by match to protein family HMM PF00892; transporter complement(2322167..2323015) Clostridium novyi NT 4540249 YP_879105.1 CDS NT01CX_0639 NC_008593.1 2323162 2323797 R identified by match to protein family HMM PF00037; ferredoxin-like protein complement(2323162..2323797) Clostridium novyi NT 4540250 YP_879106.1 CDS NT01CX_0640 NC_008593.1 2324022 2325731 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 2324022..2325731 Clostridium novyi NT 4540251 YP_879107.1 CDS NT01CX_0641 NC_008593.1 2325817 2326452 R hypothetical protein complement(2325817..2326452) Clostridium novyi NT 4540252 YP_879108.1 CDS NT01CX_0642 NC_008593.1 2326478 2330218 R DNA helicase complement(2326478..2330218) Clostridium novyi NT 4540253 YP_879109.1 CDS NT01CX_0643 NC_008593.1 2330351 2331355 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A complement(2330351..2331355) Clostridium novyi NT 4540254 YP_879110.1 CDS NT01CX_0644 NC_008593.1 2331555 2332247 D similar to yetF/ydfS/ykjA/yrbG/ydfR B. subtilis; identified by match to protein family HMM PF04239; hypothetical protein 2331555..2332247 Clostridium novyi NT 4540255 YP_879111.1 CDS NT01CX_0645 NC_008593.1 2332278 2332646 D hypothetical protein 2332278..2332646 Clostridium novyi NT 4540256 YP_879112.1 CDS ileS NC_008593.1 2332692 2335808 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(2332692..2335808) Clostridium novyi NT 4540257 YP_879113.1 CDS NT01CX_0647 NC_008593.1 2336528 2337118 R identified by match to protein family HMM PF02452; pemK family DNA-binding protein complement(2336528..2337118) Clostridium novyi NT 4540258 YP_879114.1 CDS NT01CX_0648 NC_008593.1 2337226 2338161 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(2337226..2338161) Clostridium novyi NT 4540259 YP_879115.1 CDS NT01CX_0649 NC_008593.1 2338328 2340145 R identified by match to protein family HMM PF01520; match to protein family HMM PF07532; N-acetylmuramoyl-L-alanine amidase complement(2338328..2340145) Clostridium novyi NT 4540260 YP_879116.1 CDS NT01CX_0650 NC_008593.1 2340319 2340960 D metallo-beta-lactamase superfamily Zn-dependent hydrolase 2340319..2340960 Clostridium novyi NT 4540261 YP_879117.1 CDS NT01CX_0651 NC_008593.1 2341002 2341667 R identified by match to protein family HMM PF00717; match to protein family HMM PF01381; LacI/xre family transcriptional regulator complement(2341002..2341667) Clostridium novyi NT 4540262 YP_879118.1 CDS NT01CX_0652 NC_008593.1 2341848 2342228 R hypothetical protein complement(2341848..2342228) Clostridium novyi NT 4540263 YP_879119.1 CDS NT01CX_0653 NC_008593.1 2342251 2342766 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase complement(2342251..2342766) Clostridium novyi NT 4540264 YP_879120.1 CDS murI NC_008593.1 2342874 2343653 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(2342874..2343653) Clostridium novyi NT 4540265 YP_879121.1 CDS NT01CX_0655 NC_008593.1 2344004 2345902 D identified by match to protein family HMM PF00120; glutamine synthetase 2344004..2345902 Clostridium novyi NT 4540927 YP_879122.1 CDS NT01CX_0656 NC_008593.1 2346025 2346405 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(2346025..2346405) Clostridium novyi NT 4540928 YP_879123.1 CDS NT01CX_0657 NC_008593.1 2346585 2347001 R identified by match to protein family HMM PF00571; hypothetical protein complement(2346585..2347001) Clostridium novyi NT 4540929 YP_879124.1 CDS NT01CX_0658 NC_008593.1 2347180 2347524 D hypothetical protein 2347180..2347524 Clostridium novyi NT 4540930 YP_879125.1 CDS NT01CX_0659 NC_008593.1 2347898 2351335 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2347898..2351335 Clostridium novyi NT 4540931 YP_879126.1 CDS NT01CX_0660 NC_008593.1 2351411 2352868 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(2351411..2352868) Clostridium novyi NT 4540932 YP_879127.1 CDS NT01CX_0661 NC_008593.1 2353157 2354164 D hypothetical protein 2353157..2354164 Clostridium novyi NT 4540933 YP_879128.1 CDS NT01CX_0662 NC_008593.1 2354206 2354433 R hypothetical protein complement(2354206..2354433) Clostridium novyi NT 4540934 YP_879129.1 CDS NT01CX_0663 NC_008593.1 2354563 2355378 D hypothetical protein 2354563..2355378 Clostridium novyi NT 4540935 YP_879130.1 CDS NT01CX_0664 NC_008593.1 2355387 2355605 R hypothetical protein complement(2355387..2355605) Clostridium novyi NT 4540936 YP_879131.1 CDS NT01CX_0665 NC_008593.1 2355707 2356303 R identified by match to protein family HMM PF02342; tellurium resistance protein terE complement(2355707..2356303) Clostridium novyi NT 4540937 YP_879132.1 CDS NT01CX_0666 NC_008593.1 2356334 2356912 R identified by match to protein family HMM PF02342; stress protein complement(2356334..2356912) Clostridium novyi NT 4540938 YP_879133.1 CDS NT01CX_0667 NC_008593.1 2356957 2357538 R identified by match to protein family HMM PF02342; tellurium resistance protein terD complement(2356957..2357538) Clostridium novyi NT 4540939 YP_879134.1 CDS NT01CX_0668 NC_008593.1 2357713 2358132 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family transcriptional regulator 2357713..2358132 Clostridium novyi NT 4540940 YP_879135.1 CDS cooS NC_008593.1 2358238 2360133 D identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase, catalytic subunit 2358238..2360133 Clostridium novyi NT 4540941 YP_879136.1 CDS NT01CX_0670 NC_008593.1 2360215 2361510 R identified by match to protein family HMM PF00860; xanthine/uracil permease family protein complement(2360215..2361510) Clostridium novyi NT 4540942 YP_879137.1 CDS NT01CX_0671 NC_008593.1 2361678 2362505 R identified by match to protein family HMM PF02342; stress protein complement(2361678..2362505) Clostridium novyi NT 4540943 YP_879138.1 CDS NT01CX_0672 NC_008593.1 2362523 2363182 R identified by match to protein family HMM PF01987; hypothetical protein complement(2362523..2363182) Clostridium novyi NT 4540944 YP_879139.1 CDS NT01CX_0673 NC_008593.1 2363325 2363780 R hypothetical protein complement(2363325..2363780) Clostridium novyi NT 4540945 YP_879140.1 CDS NT01CX_0674 NC_008593.1 2363770 2364246 R hypothetical protein complement(2363770..2364246) Clostridium novyi NT 4540946 YP_879141.1 CDS NT01CX_0675 NC_008593.1 2364444 2366954 D similar to YCEG B. subtilis; hypothetical protein 2364444..2366954 Clostridium novyi NT 4541442 YP_879142.1 CDS NT01CX_0676 NC_008593.1 2366971 2368065 D identified by match to protein family HMM PF05816; TELA family toxic anion resistance protein 2366971..2368065 Clostridium novyi NT 4541443 YP_879143.1 CDS NT01CX_0677 NC_008593.1 2368126 2368509 R hypothetical protein complement(2368126..2368509) Clostridium novyi NT 4541444 YP_879144.1 CDS NT01CX_0678 NC_008593.1 2368656 2369357 R identified by match to protein family HMM PF02308; MgtC family protein complement(2368656..2369357) Clostridium novyi NT 4541445 YP_879145.1 CDS NT01CX_0679 NC_008593.1 2369580 2370425 R MRP protein complement(2369580..2370425) Clostridium novyi NT 4541446 YP_879146.1 CDS NT01CX_0680 NC_008593.1 2370513 2371337 R lipoprotein complement(2370513..2371337) Clostridium novyi NT 4541447 YP_879147.1 CDS NT01CX_0681 NC_008593.1 2371451 2372032 R membrane-associated protein complement(2371451..2372032) Clostridium novyi NT 4541448 YP_879148.1 CDS NT01CX_0682 NC_008593.1 2372137 2373702 R hypothetical protein complement(2372137..2373702) Clostridium novyi NT 4541449 YP_879149.1 CDS ksgA NC_008593.1 2373837 2374682 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(2373837..2374682) Clostridium novyi NT 4541450 YP_879150.1 CDS NT01CX_0684 NC_008593.1 2374663 2375229 R identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein complement(2374663..2375229) Clostridium novyi NT 4541451 YP_879151.1 CDS NT01CX_0685 NC_008593.1 2375392 2376453 R similar to YABE B. subtilis; identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein complement(2375392..2376453) Clostridium novyi NT 4541452 YP_879152.1 CDS NT01CX_0686 NC_008593.1 2376728 2377495 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(2376728..2377495) Clostridium novyi NT 4541453 YP_879153.1 CDS NT01CX_0687 NC_008593.1 2377648 2378037 R identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364; PTS system mannnose-specific transporter subunit IIA complement(2377648..2378037) Clostridium novyi NT 4541454 YP_879154.1 CDS NT01CX_0688 NC_008593.1 2378061 2378699 R identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365; dihydroxyacetone kinase subunit DhaL complement(2378061..2378699) Clostridium novyi NT 4541455 YP_879155.1 CDS dhaK NC_008593.1 2378710 2379711 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(2378710..2379711) Clostridium novyi NT 4541456 YP_879156.1 CDS NT01CX_0690 NC_008593.1 2379890 2381080 D hypothetical protein 2379890..2381080 Clostridium novyi NT 4541457 YP_879157.1 CDS NT01CX_0691 NC_008593.1 2381245 2382684 D ISBma2, transposase 2381245..2382684 Clostridium novyi NT 4541458 YP_879158.1 CDS NT01CX_0692 NC_008593.1 2382758 2383684 R hypothetical protein complement(2382758..2383684) Clostridium novyi NT 4541459 YP_879159.1 CDS NT01CX_0693 NC_008593.1 2383668 2384186 R identified by match to protein family HMM PF04542; ECF subfamily RNA polymerase sigma factor complement(2383668..2384186) Clostridium novyi NT 4541460 YP_879160.1 CDS NT01CX_0694 NC_008593.1 2384389 2385093 D hypothetical protein 2384389..2385093 Clostridium novyi NT 4541107 YP_879161.1 CDS NT01CX_0695 NC_008593.1 2385129 2386655 R identified by match to protein family HMM PF04286; hypothetical protein complement(2385129..2386655) Clostridium novyi NT 4541108 YP_879162.1 CDS NT01CX_0696 NC_008593.1 2386849 2387586 D hypothetical protein 2386849..2387586 Clostridium novyi NT 4541109 YP_879163.1 CDS metG NC_008593.1 2387676 2389616 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2387676..2389616) Clostridium novyi NT 4541110 YP_879164.1 CDS NT01CX_0698 NC_008593.1 2390204 2390899 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 2390204..2390899 Clostridium novyi NT 4541111 YP_879165.1 CDS NT01CX_0699 NC_008593.1 2390901 2392292 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; two-component sensor histidine kinase 2390901..2392292 Clostridium novyi NT 4541112 YP_879166.1 CDS NT01CX_0700 NC_008593.1 2392383 2393936 D lipoprotein 2392383..2393936 Clostridium novyi NT 4541113 YP_879167.1 CDS NT01CX_0701 NC_008593.1 2393985 2394887 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 2393985..2394887 Clostridium novyi NT 4541114 YP_879168.1 CDS NT01CX_0702 NC_008593.1 2394967 2395539 R identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; phage SPO1 DNA polymerase-related protein complement(2394967..2395539) Clostridium novyi NT 4541115 YP_879169.1 CDS NT01CX_0703 NC_008593.1 2395671 2397260 D hypothetical protein 2395671..2397260 Clostridium novyi NT 4541116 YP_879170.1 CDS NT01CX_0704 NC_008593.1 2397317 2398114 R ISBma2, transposase complement(2397317..2398114) Clostridium novyi NT 4541117 YP_879171.1 CDS NT01CX_0705 NC_008593.1 2398165 2398755 R ISBma2, transposase complement(2398165..2398755) Clostridium novyi NT 4541118 YP_879172.1 CDS NT01CX_0706 NC_008593.1 2398971 2400383 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2398971..2400383 Clostridium novyi NT 4541119 YP_879173.1 CDS thrB NC_008593.1 2400425 2401324 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(2400425..2401324) Clostridium novyi NT 4541120 YP_879174.1 CDS NT01CX_0708 NC_008593.1 2401528 2401689 R hypothetical protein complement(2401528..2401689) Clostridium novyi NT 4541121 YP_879175.1 CDS NT01CX_0709 NC_008593.1 2401682 2401825 R hypothetical protein complement(2401682..2401825) Clostridium novyi NT 4541122 YP_879176.1 CDS spmB NC_008593.1 2401833 2402357 R identified by match to protein family HMM PF07670; spore maturation protein B complement(2401833..2402357) Clostridium novyi NT 4541123 YP_879177.1 CDS spmA NC_008593.1 2402381 2402956 R identified by match to protein family HMM PF07670; spore maturation protein A complement(2402381..2402956) Clostridium novyi NT 4541124 YP_879178.1 CDS ribH NC_008593.1 2403217 2403678 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2403217..2403678) Clostridium novyi NT 4541125 YP_879179.1 CDS NT01CX_0713 NC_008593.1 2403683 2404927 R Includes: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBPsynthase); identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribA complement(2403683..2404927) Clostridium novyi NT 4541126 YP_879180.1 CDS ribE NC_008593.1 2404941 2405582 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2404941..2405582) Clostridium novyi NT 4540286 YP_879181.1 CDS ribD NC_008593.1 2405567 2406700 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(2405567..2406700) Clostridium novyi NT 4540287 YP_879182.1 CDS NT01CX_0716 NC_008593.1 2407316 2407558 D metal-binding protein 2407316..2407558 Clostridium novyi NT 4540288 YP_879183.1 CDS pepT NC_008593.1 2407613 2408836 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(2407613..2408836) Clostridium novyi NT 4540289 YP_879184.1 CDS NT01CX_0718 NC_008593.1 2408937 2409755 R hypothetical protein complement(2408937..2409755) Clostridium novyi NT 4540290 YP_879185.1 CDS NT01CX_0719 NC_008593.1 2410081 2412420 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; two-component sensor histidine kinase 2410081..2412420 Clostridium novyi NT 4540291 YP_879186.1 CDS NT01CX_0720 NC_008593.1 2412447 2412953 R hypothetical protein complement(2412447..2412953) Clostridium novyi NT 4540292 YP_879187.1 CDS NT01CX_0721 NC_008593.1 2412967 2413350 R hypothetical protein complement(2412967..2413350) Clostridium novyi NT 4540293 YP_879188.1 CDS NT01CX_0722 NC_008593.1 2413613 2414653 D identified by match to protein family HMM PF02424; ApbE family protein 2413613..2414653 Clostridium novyi NT 4540294 YP_879189.1 CDS glgC NC_008593.1 2414865 2416013 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 2414865..2416013 Clostridium novyi NT 4540295 YP_879190.1 CDS glgD NC_008593.1 2416024 2417148 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit 2416024..2417148 Clostridium novyi NT 4540296 YP_879191.1 CDS NT01CX_0725 NC_008593.1 2417275 2417850 D hypothetical protein 2417275..2417850 Clostridium novyi NT 4540297 YP_879192.1 CDS NT01CX_0726 NC_008593.1 2417883 2419424 R identified by match to protein family HMM PF01832; Beta-N-acetylglucosaminidase complement(2417883..2419424) Clostridium novyi NT 4540298 YP_879193.1 CDS NT01CX_0727 NC_008593.1 2419601 2420395 R identified by match to protein family HMM PF01261; AP endonuclease complement(2419601..2420395) Clostridium novyi NT 4540299 YP_879194.1 CDS serA NC_008593.1 2420484 2422076 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(2420484..2422076) Clostridium novyi NT 4540300 YP_879195.1 CDS NT01CX_0729 NC_008593.1 2422150 2423223 R identified by match to protein family HMM PF00266; class V aminotransferase complement(2422150..2423223) Clostridium novyi NT 4540301 YP_879196.1 CDS NT01CX_0730 NC_008593.1 2423699 2425072 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(2423699..2425072) Clostridium novyi NT 4540302 YP_879197.1 CDS NT01CX_0731 NC_008593.1 2425842 2426015 D hypothetical protein 2425842..2426015 Clostridium novyi NT 4540303 YP_879198.1 CDS NT01CX_0732 NC_008593.1 2426146 2426883 R hypothetical protein complement(2426146..2426883) Clostridium novyi NT 4540304 YP_879199.1 CDS NT01CX_0733 NC_008593.1 2427018 2427737 D lipoprotein 2427018..2427737 Clostridium novyi NT 4540870 YP_879200.1 CDS NT01CX_0734 NC_008593.1 2428053 2428835 R hypothetical protein complement(2428053..2428835) Clostridium novyi NT 4540871 YP_879201.1 CDS NT01CX_0735 NC_008593.1 2429131 2429847 D lipoprotein 2429131..2429847 Clostridium novyi NT 4540872 YP_879202.1 CDS ispF NC_008593.1 2430610 2431083 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2430610..2431083 Clostridium novyi NT 4540873 YP_879203.1 CDS NT01CX_0737 NC_008593.1 2431114 2431329 R hypothetical protein complement(2431114..2431329) Clostridium novyi NT 4540874 YP_879204.1 CDS NT01CX_0738 NC_008593.1 2431366 2431587 R hypothetical protein complement(2431366..2431587) Clostridium novyi NT 4540875 YP_879205.1 CDS NT01CX_0739 NC_008593.1 2431789 2432172 D identified by match to protein family HMM PF01638; transcriptional regulator 2431789..2432172 Clostridium novyi NT 4540876 YP_879206.1 CDS NT01CX_0740 NC_008593.1 2432192 2432548 R hypothetical protein complement(2432192..2432548) Clostridium novyi NT 4540877 YP_879207.1 CDS NT01CX_0741 NC_008593.1 2432561 2433607 R hypothetical protein complement(2432561..2433607) Clostridium novyi NT 4540878 YP_879208.1 CDS NT01CX_0742 NC_008593.1 2433876 2435291 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(2433876..2435291) Clostridium novyi NT 4540879 YP_879209.1 CDS NT01CX_0743 NC_008593.1 2435525 2435878 R hypothetical protein complement(2435525..2435878) Clostridium novyi NT 4540880 YP_879210.1 CDS NT01CX_0744 NC_008593.1 2435862 2437901 R identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter complement(2435862..2437901) Clostridium novyi NT 4540881 YP_879211.1 CDS argF NC_008593.1 2438050 2439039 R identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase complement(2438050..2439039) Clostridium novyi NT 4540882 YP_879212.1 CDS NT01CX_0746 NC_008593.1 2439109 2439264 R hypothetical protein complement(2439109..2439264) Clostridium novyi NT 4540883 YP_879213.1 CDS NT01CX_0747 NC_008593.1 2439305 2439910 R similar to YKRK B. subtilis; hypothetical protein complement(2439305..2439910) Clostridium novyi NT 4540884 YP_879214.1 CDS NT01CX_0748 NC_008593.1 2440506 2441147 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(2440506..2441147) Clostridium novyi NT 4540885 YP_879215.1 CDS NT01CX_0749 NC_008593.1 2441168 2442541 R identified by match to protein family HMM PF01743; polyA polymerase family protein complement(2441168..2442541) Clostridium novyi NT 4540886 YP_879216.1 CDS NT01CX_0750 NC_008593.1 2443195 2443443 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2443195..2443443 Clostridium novyi NT 4540887 YP_879217.1 CDS NT01CX_0751 NC_008593.1 2443605 2444819 R identified by match to protein family HMM PF00877; NLP/P60 family protein complement(2443605..2444819) Clostridium novyi NT 4540888 YP_879218.1 CDS NT01CX_0752 NC_008593.1 2444965 2445807 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole (Corrin/Porphyrin) methylase complement(2444965..2445807) Clostridium novyi NT 4540889 YP_879219.1 CDS NT01CX_0753 NC_008593.1 2445829 2446572 R SAM-dependent methyltransferase complement(2445829..2446572) Clostridium novyi NT 4540404 YP_879220.1 CDS NT01CX_0754 NC_008593.1 2446790 2447140 D identified by match to protein family HMM PF03788; LrgA family protein 2446790..2447140 Clostridium novyi NT 4540405 YP_879221.1 CDS NT01CX_0755 NC_008593.1 2447137 2447841 D identified by match to protein family HMM PF04172; LrgB family protein 2447137..2447841 Clostridium novyi NT 4540406 YP_879222.1 CDS NT01CX_0756 NC_008593.1 2447879 2448052 R identified by match to protein family HMM PF00037; ferredoxin complement(2447879..2448052) Clostridium novyi NT 4540407 YP_879223.1 CDS NT01CX_0757 NC_008593.1 2448150 2448353 R identified by match to protein family HMM PF00403; heavy-metal-associated protein complement(2448150..2448353) Clostridium novyi NT 4540408 YP_879224.1 CDS NT01CX_0758 NC_008593.1 2448366 2449280 R identified by match to protein family HMM PF04468; hypothetical protein complement(2448366..2449280) Clostridium novyi NT 4540409 YP_879225.1 CDS NT01CX_0759 NC_008593.1 2449282 2450226 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(2449282..2450226) Clostridium novyi NT 4540410 YP_879226.1 CDS NT01CX_0760 NC_008593.1 2450242 2450571 R similar to YAAQ B. subtilis; identified by match to protein family HMM PF06153; nitrogen regulatory protein P-II family protein complement(2450242..2450571) Clostridium novyi NT 4540411 YP_879227.1 CDS NT01CX_0761 NC_008593.1 2450655 2451272 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(2450655..2451272) Clostridium novyi NT 4540412 YP_879228.1 CDS NT01CX_0762 NC_008593.1 2451300 2452739 R identified by match to protein family HMM PF01276; arginine/lysine/ornithine decarboxylases complement(2451300..2452739) Clostridium novyi NT 4540413 YP_879229.1 CDS NT01CX_0763 NC_008593.1 2453130 2453633 D lipoprotein 2453130..2453633 Clostridium novyi NT 4540414 YP_879230.1 CDS NT01CX_0764 NC_008593.1 2453708 2455399 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(2453708..2455399) Clostridium novyi NT 4540415 YP_879231.1 CDS NT01CX_0765 NC_008593.1 2455572 2456720 D amidohydrolase 2455572..2456720 Clostridium novyi NT 4540416 YP_879232.1 CDS NT01CX_0766 NC_008593.1 2456760 2457239 R hypothetical protein complement(2456760..2457239) Clostridium novyi NT 4540417 YP_879233.1 CDS NT01CX_0767 NC_008593.1 2457594 2458544 D identified by match to protein family HMM PF01544; magnesium transporter CorA family protein 2457594..2458544 Clostridium novyi NT 4540418 YP_879234.1 CDS NT01CX_0768 NC_008593.1 2458620 2459537 D identified by match to protein family HMM PF02016; mccF-like protein 2458620..2459537 Clostridium novyi NT 4540419 YP_879235.1 CDS NT01CX_0769 NC_008593.1 2459696 2461135 D ISBma2, transposase 2459696..2461135 Clostridium novyi NT 4540420 YP_879236.1 CDS NT01CX_0770 NC_008593.1 2461214 2462596 R identified by match to protein family HMM PF00209; sodium-dependent symporter family protein complement(2461214..2462596) Clostridium novyi NT 4540421 YP_879237.1 CDS NT01CX_0771 NC_008593.1 2462747 2463484 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2462747..2463484) Clostridium novyi NT 4540422 YP_879238.1 CDS NT01CX_0772 NC_008593.1 2463709 2464584 R identified by match to protein family HMM PF01839; hypothetical protein complement(2463709..2464584) Clostridium novyi NT 4540779 YP_879240.1 CDS NT01CX_0777 NC_008593.1 2470100 2470843 R identified by match to protein family HMM PF00639; peptidil-prolyl cis-trans isomerase complement(2470100..2470843) Clostridium novyi NT 4540784 YP_879242.1 CDS NT01CX_0785 NC_008593.1 2477178 2478074 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(2477178..2478074) Clostridium novyi NT 4540764 YP_879243.1 CDS NT01CX_0786 NC_008593.1 2478197 2478979 R hypothetical protein complement(2478197..2478979) Clostridium novyi NT 4540765 YP_879244.1 CDS yhcG NC_008593.1 2478979 2479674 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2478979..2479674) Clostridium novyi NT 4540766 YP_879245.1 CDS NT01CX_0788 NC_008593.1 2479677 2480045 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2479677..2480045) Clostridium novyi NT 4540767 YP_879246.1 CDS NT01CX_0789 NC_008593.1 2480185 2480601 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase superfamily protein complement(2480185..2480601) Clostridium novyi NT 4540768 YP_879247.1 CDS NT01CX_0790 NC_008593.1 2480696 2481367 D identified by match to protein family HMM PF03167; uracil DNA glycosylase 2480696..2481367 Clostridium novyi NT 4540769 YP_879248.1 CDS celM NC_008593.1 2481461 2482444 R identified by match to protein family HMM PF05343; aminopeptidase M42 family endoglucanase complement(2481461..2482444) Clostridium novyi NT 4540770 YP_879249.1 CDS NT01CX_0792 NC_008593.1 2482468 2482704 R hypothetical protein complement(2482468..2482704) Clostridium novyi NT 4540771 YP_879250.1 CDS NT01CX_0793 NC_008593.1 2482748 2483716 R identified by match to protein family HMM PF05343; aminopeptidase M42 family endoglucanase complement(2482748..2483716) Clostridium novyi NT 4540772 YP_879251.1 CDS NT01CX_0794 NC_008593.1 2483707 2484726 R identified by match to protein family HMM PF05343; M20/M25/M40 family peptidase complement(2483707..2484726) Clostridium novyi NT 4540773 YP_879252.1 CDS NT01CX_0795 NC_008593.1 2484881 2485810 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(2484881..2485810) Clostridium novyi NT 4540774 YP_879253.1 CDS NT01CX_0796 NC_008593.1 2485956 2487182 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(2485956..2487182) Clostridium novyi NT 4540775 YP_879255.1 CDS NT01CX_0802 NC_008593.1 2492485 2493423 R identified by match to protein family HMM PF00583; ribosomal-protein (S5)-alanine N-acetyltransferase complement(2492485..2493423) Clostridium novyi NT 4541095 YP_879256.1 CDS NT01CX_0803 NC_008593.1 2493438 2494616 R identified by match to protein family HMM PF07690; major facilitator superfamily protein complement(2493438..2494616) Clostridium novyi NT 4541096 YP_879257.1 CDS NT01CX_0804 NC_008593.1 2494618 2495334 R identified by match to protein family HMM PF00899; ThiF family protein complement(2494618..2495334) Clostridium novyi NT 4541097 YP_879258.1 CDS NT01CX_0805 NC_008593.1 2495508 2495693 R hypothetical protein complement(2495508..2495693) Clostridium novyi NT 4541098 YP_879259.1 CDS NT01CX_0806 NC_008593.1 2495857 2496036 R hypothetical protein complement(2495857..2496036) Clostridium novyi NT 4541099 YP_879260.1 CDS NT01CX_0807 NC_008593.1 2496071 2496568 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2496071..2496568) Clostridium novyi NT 4541100 YP_879261.1 CDS sfsA NC_008593.1 2496670 2497359 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(2496670..2497359) Clostridium novyi NT 4541101 YP_879263.1 CDS NT01CX_0821 NC_008593.1 2503501 2504394 R hypothetical protein complement(2503501..2504394) Clostridium novyi NT 4540086 YP_879264.1 CDS NT01CX_0822 NC_008593.1 2504456 2504710 R identified by match to protein family HMM PF07441; sigma-K factor processing regulatory protein BOFA complement(2504456..2504710) Clostridium novyi NT 4540087 YP_879265.1 CDS recR NC_008593.1 2504835 2505440 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2504835..2505440) Clostridium novyi NT 4540088 YP_879266.1 CDS NT01CX_0824 NC_008593.1 2505447 2505791 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(2505447..2505791) Clostridium novyi NT 4540089 YP_879267.1 CDS dnaX NC_008593.1 2505873 2507492 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(2505873..2507492) Clostridium novyi NT 4540090 YP_879268.1 CDS NT01CX_0827 NC_008593.1 2508131 2508847 R lipoprotein complement(2508131..2508847) Clostridium novyi NT 4540483 YP_879269.1 CDS NT01CX_0828 NC_008593.1 2508909 2509352 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein, pytative complement(2508909..2509352) Clostridium novyi NT 4540484 YP_879270.1 CDS NT01CX_0830 NC_008593.1 2509640 2510374 D identified by match to protein family HMM TIGR02206; hypothetical protein 2509640..2510374 Clostridium novyi NT 4540486 YP_879271.1 CDS NT01CX_0831 NC_008593.1 2510441 2511328 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2510441..2511328 Clostridium novyi NT 4540487 YP_879272.1 CDS NT01CX_0832 NC_008593.1 2511323 2512054 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(2511323..2512054) Clostridium novyi NT 4540488 YP_879273.1 CDS NT01CX_0833 NC_008593.1 2512289 2514112 R identified by match to protein family HMM PF03009; periplasmic glycerophosphoryl diester phosphodiesterase complement(2512289..2514112) Clostridium novyi NT 4540489 YP_879274.1 CDS NT01CX_0834 NC_008593.1 2514695 2515999 R identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; PBSX family phage terminase large subunit complement(2514695..2515999) Clostridium novyi NT 4540490 YP_879275.1 CDS NT01CX_0835 NC_008593.1 2515992 2516360 R identified by match to protein family HMM PF03592; Phage terminase small subunit complement(2515992..2516360) Clostridium novyi NT 4540491 YP_879276.1 CDS NT01CX_0836 NC_008593.1 2516435 2517322 R identified by match to protein family HMM PF05065; Phage capsid family protein complement(2516435..2517322) Clostridium novyi NT 4540492 YP_879277.1 CDS NT01CX_0837 NC_008593.1 2517322 2517690 R hypothetical protein complement(2517322..2517690) Clostridium novyi NT 4540493 YP_879278.1 CDS NT01CX_0838 NC_008593.1 2517709 2518248 R hypothetical protein complement(2517709..2518248) Clostridium novyi NT 4540494 YP_879279.1 CDS NT01CX_0839 NC_008593.1 2518261 2518569 R hypothetical protein complement(2518261..2518569) Clostridium novyi NT 4540495 YP_879280.1 CDS NT01CX_0840 NC_008593.1 2518666 2520840 R identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; primase complement(2518666..2520840) Clostridium novyi NT 4540496 YP_879281.1 CDS NT01CX_0841 NC_008593.1 2521273 2521716 D identified by match to protein family HMM PF01381; MerR family transcriptional regulator 2521273..2521716 Clostridium novyi NT 4540497 YP_879282.1 CDS NT01CX_0842 NC_008593.1 2521780 2521884 D hypothetical protein 2521780..2521884 Clostridium novyi NT 4540498 YP_879283.1 CDS NT01CX_0843 NC_008593.1 2521851 2523014 D identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 2521851..2523014 Clostridium novyi NT 4540499 YP_879284.1 CDS serS NC_008593.1 2523763 2525043 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2523763..2525043) Clostridium novyi NT 4541625 YP_879285.1 CDS NT01CX_0849 NC_008593.1 2525397 2525654 R hypothetical protein complement(2525397..2525654) Clostridium novyi NT 4541626 YP_879286.1 CDS NT01CX_0850 NC_008593.1 2525644 2527038 R identified by match to protein family HMM PF04324; FAD-dependent dehydrogenase complement(2525644..2527038) Clostridium novyi NT 4541627 YP_879287.1 CDS NT01CX_0851 NC_008593.1 2527064 2529184 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2527064..2529184) Clostridium novyi NT 4541628 YP_879288.1 CDS NT01CX_0852 NC_008593.1 2529421 2532147 R identified by match to protein family HMM PF03699; hypothetical protein complement(2529421..2532147) Clostridium novyi NT 4541629 YP_879289.1 CDS NT01CX_0853 NC_008593.1 2532164 2532676 R identified by match to protein family HMM PF02829; 3H domain-containing protein complement(2532164..2532676) Clostridium novyi NT 4541630 YP_879290.1 CDS NT01CX_0854 NC_008593.1 2532690 2533199 R identified by match to protein family HMM TIGR00277; hypothetical protein complement(2532690..2533199) Clostridium novyi NT 4541631 YP_879292.1 CDS gyrA NC_008593.1 2538630 2541161 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2538630..2541161) Clostridium novyi NT 4541465 YP_879293.1 CDS gyrB NC_008593.1 2541183 2543096 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(2541183..2543096) Clostridium novyi NT 4541466 YP_879294.1 CDS NT01CX_0863 NC_008593.1 2543112 2543381 R hypothetical protein complement(2543112..2543381) Clostridium novyi NT 4541467 YP_879295.1 CDS recF NC_008593.1 2543402 2544487 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(2543402..2544487) Clostridium novyi NT 4541468 YP_879296.1 CDS NT01CX_0865 NC_008593.1 2544543 2544749 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(2544543..2544749) Clostridium novyi NT 4541469 YP_879297.1 CDS dnaN NC_008593.1 2544786 2545889 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(2544786..2545889) Clostridium novyi NT 4541470 YP_879298.1 CDS dnaA NC_008593.1 2546147 2547493 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(2546147..2547493) Clostridium novyi NT 4541471 NT01CX_0893 tRNA NT01CX_0893 NC_008593.1 20831 20906 D tRNA-Thr 20831..20906 Clostridium novyi NT 4540989 NT01CX_0909 tRNA NT01CX_0909 NC_008593.1 37102 37176 D tRNA-Glu 37102..37176 Clostridium novyi NT 4540069 NT01CX_0910 tRNA NT01CX_0910 NC_008593.1 37190 37265 D tRNA-Val 37190..37265 Clostridium novyi NT 4540993 NT01CX_0911 tRNA NT01CX_0911 NC_008593.1 37279 37355 D tRNA-Asp 37279..37355 Clostridium novyi NT 4539839 NT01CX_0912 tRNA NT01CX_0912 NC_008593.1 37363 37438 D tRNA-Thr 37363..37438 Clostridium novyi NT 4540990 NT01CX_0913 tRNA NT01CX_0913 NC_008593.1 37456 37530 D tRNA-Glu 37456..37530 Clostridium novyi NT 4540070 NT01CX_0914 tRNA NT01CX_0914 NC_008593.1 37544 37619 D tRNA-Val 37544..37619 Clostridium novyi NT 4540994 NT01CX_0915 tRNA NT01CX_0915 NC_008593.1 37632 37708 D tRNA-Asp 37632..37708 Clostridium novyi NT 4539840 NT01CX_0916 tRNA NT01CX_0916 NC_008593.1 37714 37789 D tRNA-Thr 37714..37789 Clostridium novyi NT 4540991 NT01CX_1007 tRNA NT01CX_1007 NC_008593.1 128922 128997 R tRNA-Pro complement(128922..128997) Clostridium novyi NT 4540988 NT01CX_1031 tRNA NT01CX_1031 NC_008593.1 152120 152208 D tRNA-Leu 152120..152208 Clostridium novyi NT 4540072 NT01CX_1032 tRNA NT01CX_1032 NC_008593.1 152213 152288 D tRNA-Met 152213..152288 Clostridium novyi NT 4540076 NT01CX_1033 tRNA NT01CX_1033 NC_008593.1 152294 152370 D tRNA-Met 152294..152370 Clostridium novyi NT 4540077 NT01CX_1034 tRNA NT01CX_1034 NC_008593.1 152419 152507 D tRNA-Leu 152419..152507 Clostridium novyi NT 4540073 NT01CX_1035 tRNA NT01CX_1035 NC_008593.1 152513 152588 D tRNA-Met 152513..152588 Clostridium novyi NT 4540078 NT01CX_1036 tRNA NT01CX_1036 NC_008593.1 152623 152699 D tRNA-Met 152623..152699 Clostridium novyi NT 4540986 NT01CX_1047 tRNA NT01CX_1047 NC_008593.1 166178 166252 D tRNA-Asn 166178..166252 Clostridium novyi NT 4539836 NT01CX_1053 tRNA NT01CX_1053 NC_008593.1 174902 174976 D tRNA-Asn 174902..174976 Clostridium novyi NT 4539837 NT01CX_1055 tRNA NT01CX_1055 NC_008593.1 175116 175190 D tRNA-Asn 175116..175190 Clostridium novyi NT 4539838 NT01CX_1099 tRNA NT01CX_1099 NC_008593.1 217728 217803 D tRNA-Thr 217728..217803 Clostridium novyi NT 4540992 NT01CX_1374 tRNA NT01CX_1374 NC_008593.1 525478 525553 R tRNA-Gln complement(525478..525553) Clostridium novyi NT 4539844 NT01CX_1676 tRNA NT01CX_1676 NC_008593.1 881614 881700 R tRNA-Leu complement(881614..881700) Clostridium novyi NT 4540074 NT01CX_1680 tRNA NT01CX_1680 NC_008593.1 886083 886168 D tRNA-Leu 886083..886168 Clostridium novyi NT 4540075 NT01CX_1751 tRNA NT01CX_1751 NC_008593.1 958223 958298 D tRNA-Val 958223..958298 Clostridium novyi NT 4541603 NT01CX_1752 tRNA NT01CX_1752 NC_008593.1 958314 958390 D tRNA-Asp 958314..958390 Clostridium novyi NT 4539841 NT01CX_1753 tRNA NT01CX_1753 NC_008593.1 958399 958474 D tRNA-Phe 958399..958474 Clostridium novyi NT 4540987 NT01CX_1754 tRNA NT01CX_1754 NC_008593.1 958482 958556 D tRNA-Gly 958482..958556 Clostridium novyi NT 4540071 NT01CX_1755 tRNA NT01CX_1755 NC_008593.1 958568 958642 D tRNA-Cys 958568..958642 Clostridium novyi NT 4539842 NT01CX_1756 tRNA NT01CX_1756 NC_008593.1 958730 958804 D tRNA-Cys 958730..958804 Clostridium novyi NT 4539843 NT01CX_0151 tRNA NT01CX_0151 NC_008593.1 1805317 1805391 R tRNA-Asn complement(1805317..1805391) Clostridium novyi NT 4540906 NT01CX_0154 tRNA NT01CX_0154 NC_008593.1 1808480 1808556 R tRNA-Ile complement(1808480..1808556) Clostridium novyi NT 4540710 NT01CX_0155 tRNA NT01CX_0155 NC_008593.1 1808560 1808635 R tRNA-Ala complement(1808560..1808635) Clostridium novyi NT 4540711 NT01CX_0346 tRNA NT01CX_0346 NC_008593.1 2036464 2036537 R tRNA-Gly complement(2036464..2036537) Clostridium novyi NT 4539577 NT01CX_0347 tRNA NT01CX_0347 NC_008593.1 2036553 2036629 R tRNA-Ile complement(2036553..2036629) Clostridium novyi NT 4539578 NT01CX_0348 tRNA NT01CX_0348 NC_008593.1 2036634 2036709 R tRNA-Ala complement(2036634..2036709) Clostridium novyi NT 4539579 NT01CX_0404 tRNA NT01CX_0404 NC_008593.1 2098557 2098633 R tRNA-Arg complement(2098557..2098633) Clostridium novyi NT 4540608 NT01CX_0405 tRNA NT01CX_0405 NC_008593.1 2098653 2098726 R tRNA-Gly complement(2098653..2098726) Clostridium novyi NT 4540609 NT01CX_0406 tRNA NT01CX_0406 NC_008593.1 2098766 2098841 R tRNA-Lys complement(2098766..2098841) Clostridium novyi NT 4540610 NT01CX_0407 tRNA NT01CX_0407 NC_008593.1 2098846 2098920 R tRNA-Gln complement(2098846..2098920) Clostridium novyi NT 4541334 NT01CX_0408 tRNA NT01CX_0408 NC_008593.1 2098925 2099000 R tRNA-His complement(2098925..2099000) Clostridium novyi NT 4541335 NT01CX_0409 tRNA NT01CX_0409 NC_008593.1 2099007 2099083 R tRNA-Arg complement(2099007..2099083) Clostridium novyi NT 4541336 NT01CX_0410 tRNA NT01CX_0410 NC_008593.1 2099088 2099161 R tRNA-Gly complement(2099088..2099161) Clostridium novyi NT 4541337 NT01CX_0411 tRNA NT01CX_0411 NC_008593.1 2099167 2099242 R tRNA-Pro complement(2099167..2099242) Clostridium novyi NT 4541338 NT01CX_0412 tRNA NT01CX_0412 NC_008593.1 2099272 2099347 R tRNA-Lys complement(2099272..2099347) Clostridium novyi NT 4541339 NT01CX_0413 tRNA NT01CX_0413 NC_008593.1 2099354 2099430 R tRNA-Arg complement(2099354..2099430) Clostridium novyi NT 4541340 NT01CX_0414 tRNA NT01CX_0414 NC_008593.1 2099437 2099510 R tRNA-Gly complement(2099437..2099510) Clostridium novyi NT 4541341 NT01CX_0415 tRNA NT01CX_0415 NC_008593.1 2099516 2099590 R tRNA-Gly complement(2099516..2099590) Clostridium novyi NT 4541342 NT01CX_0416 tRNA NT01CX_0416 NC_008593.1 2099594 2099677 R tRNA-Leu complement(2099594..2099677) Clostridium novyi NT 4541343 NT01CX_0417 tRNA NT01CX_0417 NC_008593.1 2099702 2099777 R tRNA-Lys complement(2099702..2099777) Clostridium novyi NT 4539864 NT01CX_0418 tRNA NT01CX_0418 NC_008593.1 2099782 2099856 R tRNA-Gln complement(2099782..2099856) Clostridium novyi NT 4539865 NT01CX_0419 tRNA NT01CX_0419 NC_008593.1 2099861 2099936 R tRNA-His complement(2099861..2099936) Clostridium novyi NT 4539866 NT01CX_0420 tRNA NT01CX_0420 NC_008593.1 2099945 2100020 R tRNA-Lys complement(2099945..2100020) Clostridium novyi NT 4539867 NT01CX_0421 tRNA NT01CX_0421 NC_008593.1 2100027 2100103 R tRNA-Arg complement(2100027..2100103) Clostridium novyi NT 4539868 NT01CX_0422 tRNA NT01CX_0422 NC_008593.1 2100110 2100183 R tRNA-Gly complement(2100110..2100183) Clostridium novyi NT 4539869 NT01CX_0423 tRNA NT01CX_0423 NC_008593.1 2100189 2100263 R tRNA-Gly complement(2100189..2100263) Clostridium novyi NT 4539870 NT01CX_0424 tRNA NT01CX_0424 NC_008593.1 2100271 2100346 R tRNA-Pro complement(2100271..2100346) Clostridium novyi NT 4539871 NT01CX_0500 tRNA NT01CX_0500 NC_008593.1 2187204 2187279 R tRNA-Trp complement(2187204..2187279) Clostridium novyi NT 4541560 NT01CX_0517 tRNA NT01CX_0517 NC_008593.1 2205706 2205790 R tRNA-Tyr complement(2205706..2205790) Clostridium novyi NT 4541161 NT01CX_0518 tRNA NT01CX_0518 NC_008593.1 2205831 2205906 R tRNA-Val complement(2205831..2205906) Clostridium novyi NT 4541162 NT01CX_0519 tRNA NT01CX_0519 NC_008593.1 2205916 2206000 R tRNA-Tyr complement(2205916..2206000) Clostridium novyi NT 4541163 NT01CX_0520 tRNA NT01CX_0520 NC_008593.1 2206005 2206080 R tRNA-Thr complement(2206005..2206080) Clostridium novyi NT 4540519 NT01CX_0778 tRNA NT01CX_0778 NC_008593.1 2471065 2471140 R tRNA-Lys complement(2471065..2471140) Clostridium novyi NT 4540785 NT01CX_0779 tRNA NT01CX_0779 NC_008593.1 2471411 2471486 R tRNA-Phe complement(2471411..2471486) Clostridium novyi NT 4540786 NT01CX_0780 tRNA NT01CX_0780 NC_008593.1 2472004 2472079 R tRNA-Phe complement(2472004..2472079) Clostridium novyi NT 4540787 NT01CX_0797 tRNA NT01CX_0797 NC_008593.1 2487268 2487343 R tRNA-Lys complement(2487268..2487343) Clostridium novyi NT 4540776 NT01CX_0809 tRNA NT01CX_0809 NC_008593.1 2497597 2497671 R tRNA-Glu complement(2497597..2497671) Clostridium novyi NT 4541102 NT01CX_0810 tRNA NT01CX_0810 NC_008593.1 2497725 2497799 R tRNA-Gln complement(2497725..2497799) Clostridium novyi NT 4541103 NT01CX_0811 tRNA NT01CX_0811 NC_008593.1 2497806 2497882 R tRNA-Arg complement(2497806..2497882) Clostridium novyi NT 4541104 NT01CX_0812 tRNA NT01CX_0812 NC_008593.1 2497888 2497961 R tRNA-Gly complement(2497888..2497961) Clostridium novyi NT 4541105 NT01CX_0813 tRNA NT01CX_0813 NC_008593.1 2497976 2498059 R tRNA-Leu complement(2497976..2498059) Clostridium novyi NT 4541106 NT01CX_0814 tRNA NT01CX_0814 NC_008593.1 2498077 2498151 R tRNA-Glu complement(2498077..2498151) Clostridium novyi NT 4540079 NT01CX_0818 tRNA NT01CX_0818 NC_008593.1 2501342 2501418 R tRNA-Ile complement(2501342..2501418) Clostridium novyi NT 4540083 NT01CX_0819 tRNA NT01CX_0819 NC_008593.1 2501422 2501497 R tRNA-Ala complement(2501422..2501497) Clostridium novyi NT 4540084 NT01CX_0826 tRNA NT01CX_0826 NC_008593.1 2507885 2507974 R tRNA-Ser complement(2507885..2507974) Clostridium novyi NT 4540482 NT01CX_0829 tRNA NT01CX_0829 NC_008593.1 2509404 2509480 R tRNA-Arg complement(2509404..2509480) Clostridium novyi NT 4540485 NT01CX_0844 tRNA NT01CX_0844 NC_008593.1 2523119 2523195 R tRNA-Arg complement(2523119..2523195) Clostridium novyi NT 4541621 NT01CX_0845 tRNA NT01CX_0845 NC_008593.1 2523339 2523429 R tRNA-Ser complement(2523339..2523429) Clostridium novyi NT 4541622 NT01CX_0846 tRNA NT01CX_0846 NC_008593.1 2523455 2523545 R tRNA-Ser complement(2523455..2523545) Clostridium novyi NT 4541623 NT01CX_0847 tRNA NT01CX_0847 NC_008593.1 2523611 2523701 R tRNA-Ser complement(2523611..2523701) Clostridium novyi NT 4541624 NT01CX_0855 tRNA NT01CX_0855 NC_008593.1 2533304 2533379 R tRNA-Ala complement(2533304..2533379) Clostridium novyi NT 4541632 NT01CX_0856 tRNA NT01CX_0856 NC_008593.1 2533383 2533459 R tRNA-Met complement(2533383..2533459) Clostridium novyi NT 4541633 NT01CX_1050 rRNA rrsJ NC_008593.1 170256 171767 D 16S ribosomal RNA 170256..171767 Clostridium novyi NT 4541522 NT01CX_1051 rRNA rrlJ NC_008593.1 171942 174846 D 23S ribosomal RNA 171942..174846 Clostridium novyi NT 4541523 NT01CX_1054 rRNA rrfJ NC_008593.1 174994 175110 D 5S ribosomal RNA 174994..175110 Clostridium novyi NT 4541524 NT01CX_0153 rRNA rrlA NC_008593.1 1805448 1808352 R 23S ribosomal RNA complement(1805448..1808352) Clostridium novyi NT 4540907 NT01CX_0156 rRNA rrsA NC_008593.1 1808764 1810275 R 16S ribosomal RNA complement(1808764..1810275) Clostridium novyi NT 4540712 NT01CX_0250 rRNA rrfB NC_008593.1 1923779 1923895 R 5S ribosomal RNA complement(1923779..1923895) Clostridium novyi NT 4539742 NT01CX_0252 rRNA rrlB NC_008593.1 1923931 1926835 R 23S ribosomal RNA complement(1923931..1926835) Clostridium novyi NT 4539743 NT01CX_0253 rRNA rrsB NC_008593.1 1927010 1928521 R 16S ribosomal RNA complement(1927010..1928521) Clostridium novyi NT 4539745 NT01CX_0271 rRNA rrfC NC_008593.1 1946231 1946347 R 5S ribosomal RNA complement(1946231..1946347) Clostridium novyi NT 4541267 NT01CX_0273 rRNA rrlC NC_008593.1 1946383 1949287 R 23S ribosomal RNA complement(1946383..1949287) Clostridium novyi NT 4541268 NT01CX_0274 rRNA rrsC NC_008593.1 1949462 1950973 R 16S ribosomal RNA complement(1949462..1950973) Clostridium novyi NT 4541270 NT01CX_0340 rRNA rrfD NC_008593.1 2027881 2027997 R 5S ribosomal RNA complement(2027881..2027997) Clostridium novyi NT 4539571 NT01CX_0342 rRNA rrlD NC_008593.1 2028034 2030938 R 23S ribosomal RNA complement(2028034..2030938) Clostridium novyi NT 4539572 NT01CX_0343 rRNA rrsD NC_008593.1 2031113 2032624 R 16S ribosomal RNA complement(2031113..2032624) Clostridium novyi NT 4539574 NT01CX_0773 rRNA rrfE NC_008593.1 2464769 2464885 R 5S ribosomal RNA complement(2464769..2464885) Clostridium novyi NT 4540780 NT01CX_0775 rRNA rrlE NC_008593.1 2464964 2467868 R 23S ribosomal RNA complement(2464964..2467868) Clostridium novyi NT 4540781 NT01CX_0776 rRNA rrsE NC_008593.1 2468043 2469554 R 16S ribosomal RNA complement(2468043..2469554) Clostridium novyi NT 4540783 NT01CX_0779a rRNA NT01CX_0779a NC_008593.1 2471489 2471608 R 5S ribosomal RNA complement(2471489..2471608) Clostridium novyi NT 5309695 NT01CX_0781 rRNA rrfF NC_008593.1 2472085 2472201 R 5S ribosomal RNA complement(2472085..2472201) Clostridium novyi NT 4540788 NT01CX_0783 rRNA rrlF NC_008593.1 2472238 2475142 R 23S ribosomal RNA complement(2472238..2475142) Clostridium novyi NT 4540789 NT01CX_0784 rRNA rrsF NC_008593.1 2475317 2476828 R 16S ribosomal RNA complement(2475317..2476828) Clostridium novyi NT 4540763 NT01CX_0798 rRNA rrfG NC_008593.1 2487350 2487466 R 5S ribosomal RNA complement(2487350..2487466) Clostridium novyi NT 4540777 NT01CX_0800 rRNA rrlG NC_008593.1 2487502 2490406 R 23S ribosomal RNA complement(2487502..2490406) Clostridium novyi NT 4540778 NT01CX_0801 rRNA rrsG NC_008593.1 2490581 2492092 R 16S ribosomal RNA complement(2490581..2492092) Clostridium novyi NT 4541094 NT01CX_0815 rRNA rrfH NC_008593.1 2498158 2498274 R 5S ribosomal RNA complement(2498158..2498274) Clostridium novyi NT 4540080 NT01CX_0817 rRNA rrlH NC_008593.1 2498310 2501214 R 23S ribosomal RNA complement(2498310..2501214) Clostridium novyi NT 4540081 NT01CX_0820 rRNA rrsH NC_008593.1 2501581 2503092 R 16S ribosomal RNA complement(2501581..2503092) Clostridium novyi NT 4540085 NT01CX_0857 rRNA rrfI NC_008593.1 2533463 2533579 R 5S ribosomal RNA complement(2533463..2533579) Clostridium novyi NT 4541461 NT01CX_0859 rRNA rrlI NC_008593.1 2533658 2536562 R 23S ribosomal RNA complement(2533658..2536562) Clostridium novyi NT 4541462 NT01CX_0860 rRNA rrsI NC_008593.1 2536737 2538248 R 16S ribosomal RNA complement(2536737..2538248) Clostridium novyi NT 4541464