-- dump date 20140619_044931 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_694476.1 110799791 4202657 411..1784 1 NC_008261.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1784 dnaA 4202657 dnaA Clostridium perfringens ATCC 13124 chromosomal replication initiation protein YP_694476.1 411 D 195103 CDS YP_694477.1 110798947 4202178 2079..3179 1 NC_008261.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3179 dnaN 4202178 dnaN Clostridium perfringens ATCC 13124 DNA polymerase III subunit beta YP_694477.1 2079 D 195103 CDS YP_694478.1 110799682 4201729 3305..3511 1 NC_008261.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 3511 4201729 CPF_0003 Clostridium perfringens ATCC 13124 S4 domain-containing protein YP_694478.1 3305 D 195103 CDS YP_694479.1 110801062 4201736 3567..4652 1 NC_008261.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4652 recF 4201736 recF Clostridium perfringens ATCC 13124 recombination protein F YP_694479.1 3567 D 195103 CDS YP_694480.1 110800243 4202767 4666..4926 1 NC_008261.1 identified by similarity to PIR:T46554; hypothetical protein 4926 4202767 CPF_0005 Clostridium perfringens ATCC 13124 hypothetical protein YP_694480.1 4666 D 195103 CDS YP_694481.1 110799437 4202552 5163..7079 1 NC_008261.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7079 gyrB 4202552 gyrB Clostridium perfringens ATCC 13124 DNA gyrase subunit B YP_694481.1 5163 D 195103 CDS YP_694482.1 110800886 4202791 7101..9620 1 NC_008261.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 9620 gyrA 4202791 gyrA Clostridium perfringens ATCC 13124 DNA gyrase subunit A YP_694482.1 7101 D 195103 CDS YP_694483.1 110799285 4202615 15422..15925 1 NC_008261.1 identified by similarity to GB:AAO34741.1; hypothetical protein 15925 4202615 CPF_0010 Clostridium perfringens ATCC 13124 hypothetical protein YP_694483.1 15422 D 195103 CDS YP_694484.1 110798661 4202709 16274..19030 1 NC_008261.1 identified by match to protein family HMM PF03699; hypothetical protein 19030 4202709 CPF_0011 Clostridium perfringens ATCC 13124 hypothetical protein YP_694484.1 16274 D 195103 CDS YP_694485.1 110800557 4201427 19273..20667 1 NC_008261.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 20667 4201427 CPF_0012 Clostridium perfringens ATCC 13124 FAD-dependent oxidoreductase YP_694485.1 19273 D 195103 CDS YP_694486.1 110799910 4203205 20680..20913 1 NC_008261.1 identified by similarity to PIR:E96901; hypothetical protein 20913 4203205 CPF_0013 Clostridium perfringens ATCC 13124 hypothetical protein YP_694486.1 20680 D 195103 CDS YP_694487.1 110798993 4201853 21265..22542 1 NC_008261.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 22542 serS 4201853 serS Clostridium perfringens ATCC 13124 seryl-tRNA synthetase YP_694487.1 21265 D 195103 CDS YP_694488.1 110801223 4203300 22719..23138 1 NC_008261.1 hypothetical protein 23138 4203300 CPF_0015 Clostridium perfringens ATCC 13124 hypothetical protein YP_694488.1 22719 D 195103 CDS YP_694489.1 110799632 4202497 23755..24021 1 NC_008261.1 hypothetical protein 24021 4202497 CPF_0018 Clostridium perfringens ATCC 13124 hypothetical protein YP_694489.1 23755 D 195103 CDS YP_694490.1 110800136 4203533 complement(24351..24533) 1 NC_008261.1 hypothetical protein 24533 4203533 CPF_0021 Clostridium perfringens ATCC 13124 hypothetical protein YP_694490.1 24351 R 195103 CDS YP_694491.1 110800432 4203812 24771..25652 1 NC_008261.1 identified by similarity to GB:AAO36323.1; hypothetical protein 25652 4203812 CPF_0022 Clostridium perfringens ATCC 13124 hypothetical protein YP_694491.1 24771 D 195103 CDS YP_694492.1 110801245 4203322 complement(25741..25905) 1 NC_008261.1 hypothetical protein 25905 4203322 CPF_0023 Clostridium perfringens ATCC 13124 hypothetical protein YP_694492.1 25741 R 195103 CDS YP_694493.1 110798865 4201143 26114..29590 1 NC_008261.1 identified by similarity to SP:P23477; match to protein family HMM TIGR02773; ATP-dependent nuclease subunit B 29590 addB 4201143 addB Clostridium perfringens ATCC 13124 ATP-dependent nuclease subunit B YP_694493.1 26114 D 195103 CDS YP_694494.1 110799297 4202627 29580..33395 1 NC_008261.1 identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR02785; ATP-dependent nuclease subunit A 33395 addA 4202627 addA Clostridium perfringens ATCC 13124 ATP-dependent nuclease subunit A YP_694494.1 29580 D 195103 CDS YP_694495.1 110800095 4202400 complement(33434..34708) 1 NC_008261.1 identified by match to protein family HMM PF01743; poly(A) polymerase 34708 4202400 CPF_0026 Clostridium perfringens ATCC 13124 poly(A) polymerase YP_694495.1 33434 R 195103 CDS YP_694496.1 110799108 4202828 34839..35810 1 NC_008261.1 identified by similarity to SP:O07521; match to protein family HMM PF01336; match to protein family HMM PF01966; 3'-5' exoribonuclease 35810 yhaM 4202828 yhaM Clostridium perfringens ATCC 13124 3'-5' exoribonuclease YP_694496.1 34839 D 195103 CDS YP_694497.1 110799840 4203738 complement(35842..37002) 1 NC_008261.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 37002 4203738 CPF_0028 Clostridium perfringens ATCC 13124 ErfK/YbiS/YcfS/YnhG family protein YP_694497.1 35842 R 195103 CDS YP_694498.1 110800422 4203802 37194..38414 1 NC_008261.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 38414 pepT 4203802 pepT Clostridium perfringens ATCC 13124 peptidase T YP_694498.1 37194 D 195103 CDS YP_694499.1 110801244 4203321 complement(38520..39395) 1 NC_008261.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 39395 4203321 CPF_0030 Clostridium perfringens ATCC 13124 degV family protein YP_694499.1 38520 R 195103 CDS YP_694500.1 110798802 4201778 39832..40971 1 NC_008261.1 hypothetical protein 40971 4201778 CPF_0032 Clostridium perfringens ATCC 13124 hypothetical protein YP_694500.1 39832 D 195103 CDS YP_694501.1 110798633 4201686 complement(41086..41970) 1 NC_008261.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 41970 psd 4201686 psd Clostridium perfringens ATCC 13124 phosphatidylserine decarboxylase YP_694501.1 41086 R 195103 CDS YP_694502.1 110801421 4203017 42133..42702 1 NC_008261.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 42702 4203017 CPF_0034 Clostridium perfringens ATCC 13124 TetR family transcriptional regulator YP_694502.1 42133 D 195103 CDS YP_694503.1 110800603 4203577 42977..44242 1 NC_008261.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 44242 4203577 CPF_0036 Clostridium perfringens ATCC 13124 transporter YP_694503.1 42977 D 195103 CDS YP_694504.1 110798954 4201367 44245..44676 1 NC_008261.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 44676 4201367 CPF_0037 Clostridium perfringens ATCC 13124 cytidine/deoxycytidylate deaminase YP_694504.1 44245 D 195103 CDS YP_694505.1 110800043 4203711 44754..45197 1 NC_008261.1 hypothetical protein 45197 4203711 CPF_0038 Clostridium perfringens ATCC 13124 hypothetical protein YP_694505.1 44754 D 195103 CDS YP_694506.1 110799624 4201498 45310..45675 1 NC_008261.1 identified by similarity to GB:AAO79590.1; hypothetical protein 45675 4201498 CPF_0039 Clostridium perfringens ATCC 13124 hypothetical protein YP_694506.1 45310 D 195103 CDS YP_694507.1 110799578 4202675 45836..46447 1 NC_008261.1 identified by similarity to GB:AAO35771.1; hypothetical protein 46447 4202675 CPF_0040 Clostridium perfringens ATCC 13124 hypothetical protein YP_694507.1 45836 D 195103 CDS YP_694508.1 110799806 4203684 complement(46559..48031) 1 NC_008261.1 identified by similarity to GB:AAS42428.1; match to protein family HMM PF02696; hypothetical protein 48031 4203684 CPF_0041 Clostridium perfringens ATCC 13124 hypothetical protein YP_694508.1 46559 R 195103 CDS YP_694509.1 110800852 4201274 48363..49559 1 NC_008261.1 identified by similarity to SP:P15310; match to protein family HMM PF00882; phospholipase C 49559 plc 4201274 plc Clostridium perfringens ATCC 13124 phospholipase C YP_694509.1 48363 D 195103 CDS YP_694510.1 110798981 4201104 49747..50673 1 NC_008261.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; CobW/P47K family protein 50673 4201104 CPF_0043 Clostridium perfringens ATCC 13124 CobW/P47K family protein YP_694510.1 49747 D 195103 CDS YP_694511.1 110799721 4201205 50693..51277 1 NC_008261.1 identified by similarity to GB:AAO35532.1; hypothetical protein 51277 4201205 CPF_0044 Clostridium perfringens ATCC 13124 hypothetical protein YP_694511.1 50693 D 195103 CDS YP_694512.2 261876155 4202936 51280..52173 1 NC_008261.1 identified by match to protein family HMM PF03773; permease 52173 4202936 CPF_0045 Clostridium perfringens ATCC 13124 permease YP_694512.2 51280 D 195103 CDS YP_694513.1 110801031 4201943 52186..52905 1 NC_008261.1 identified by similarity to PIR:C97096; hypothetical protein 52905 4201943 CPF_0046 Clostridium perfringens ATCC 13124 hypothetical protein YP_694513.1 52186 D 195103 CDS YP_694514.1 110798717 4201323 53171..53959 1 NC_008261.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 53959 lgt 4201323 lgt Clostridium perfringens ATCC 13124 prolipoprotein diacylglyceryl transferase YP_694514.1 53171 D 195103 CDS YP_694515.1 110799596 4203395 54732..55235 1 NC_008261.1 lipoprotein 55235 4203395 CPF_0049 Clostridium perfringens ATCC 13124 lipoprotein YP_694515.1 54732 D 195103 CDS YP_694516.1 110800785 4201771 55675..56961 1 NC_008261.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 56961 brnQ 4201771 brnQ Clostridium perfringens ATCC 13124 branched-chain amino acid transport system II carrier protein YP_694516.1 55675 D 195103 CDS YP_694517.1 110800841 4203933 complement(57107..57592) 1 NC_008261.1 identified by similarity to SP:P11045; match to protein family HMM PF00186; dihydrofolate reductase 57592 folA 4203933 folA Clostridium perfringens ATCC 13124 dihydrofolate reductase YP_694517.1 57107 R 195103 CDS YP_694518.1 110799164 4202845 57783..59426 1 NC_008261.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 59426 dnaX 4202845 dnaX Clostridium perfringens ATCC 13124 DNA polymerase III subunits gamma and tau YP_694518.1 57783 D 195103 CDS YP_694519.1 110800382 4201814 59538..59876 1 NC_008261.1 identified by similarity to SP:Q97MR5; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 59876 4201814 CPF_0053 Clostridium perfringens ATCC 13124 hypothetical protein YP_694519.1 59538 D 195103 CDS YP_694520.1 110801227 4203304 59974..60570 1 NC_008261.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 60570 recR 4203304 recR Clostridium perfringens ATCC 13124 recombination protein RecR YP_694520.1 59974 D 195103 CDS YP_694521.1 110800903 4202808 60796..61074 1 NC_008261.1 identified by similarity to GB:AAM23356.1; hypothetical protein 61074 4202808 CPF_0055 Clostridium perfringens ATCC 13124 hypothetical protein YP_694521.1 60796 D 195103 CDS YP_694522.1 110798861 4201139 61090..61368 1 NC_008261.1 identified by similarity to GB:BAB79755.1; match to protein family HMM TIGR02862; sigma-K factor processing regulatory protein BofA 61368 bofA 4201139 bofA Clostridium perfringens ATCC 13124 sigma-K factor processing regulatory protein BofA YP_694522.1 61090 D 195103 CDS YP_694523.1 110800126 4203893 61643..62788 1 NC_008261.1 hypothetical protein 62788 4203893 CPF_0057 Clostridium perfringens ATCC 13124 hypothetical protein YP_694523.1 61643 D 195103 CDS YP_694524.1 110800350 4202017 62939..63118 1 NC_008261.1 hypothetical protein 63118 4202017 CPF_0058 Clostridium perfringens ATCC 13124 hypothetical protein YP_694524.1 62939 D 195103 CDS YP_694525.1 110801125 4201626 63187..63369 1 NC_008261.1 hypothetical protein 63369 4201626 CPF_0059 Clostridium perfringens ATCC 13124 hypothetical protein YP_694525.1 63187 D 195103 CDS YP_694526.1 110799142 4200973 63533..64609 1 NC_008261.1 identified by match to protein family HMM PF00266; class V aminotransferase 64609 4200973 CPF_0060 Clostridium perfringens ATCC 13124 class V aminotransferase YP_694526.1 63533 D 195103 CDS YP_694527.1 110799921 4201445 64678..65583 1 NC_008261.1 identified by similarity to SP:P35136; match to protein family HMM PF00389; match to protein family HMM PF02826; D-3-phosphoglycerate dehydrogenase 65583 4201445 CPF_0061 Clostridium perfringens ATCC 13124 D-3-phosphoglycerate dehydrogenase YP_694527.1 64678 D 195103 CDS YP_694528.1 110800818 4201088 65733..66989 1 NC_008261.1 identified by similarity to PIR:H96901; match to protein family HMM PF06245; hypothetical protein 66989 4201088 CPF_0062 Clostridium perfringens ATCC 13124 hypothetical protein YP_694528.1 65733 D 195103 CDS YP_694529.1 110798765 4201881 complement(67045..67740) 1 NC_008261.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 67740 mtnN 4201881 mtnN Clostridium perfringens ATCC 13124 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_694529.1 67045 R 195103 CDS YP_694530.1 110799606 4203406 68118..68879 1 NC_008261.1 identified by match to protein family HMM PF00899; HesA/MoeB/ThiF family protein 68879 4203406 CPF_0064 Clostridium perfringens ATCC 13124 HesA/MoeB/ThiF family protein YP_694530.1 68118 D 195103 CDS YP_694531.1 110800426 4203806 69170..70336 1 NC_008261.1 identified by match to protein family HMM PF07690; major facilitator family transporter 70336 4203806 CPF_0065 Clostridium perfringens ATCC 13124 major facilitator family transporter YP_694531.1 69170 D 195103 CDS YP_694532.1 110801197 4203118 70715..71299 1 NC_008261.1 identified by similarity to SP:P09454; match to protein family HMM PF00583; acetyltransferase 71299 4203118 CPF_0066 Clostridium perfringens ATCC 13124 acetyltransferase YP_694532.1 70715 D 195103 CDS YP_694533.1 110799126 4203056 71391..72002 1 NC_008261.1 identified by similarity to SP:Q59484; match to protein family HMM PF01712; deoxyguanosine kinase/deoxyadenosine kinase 72002 4203056 CPF_0067 Clostridium perfringens ATCC 13124 deoxyguanosine kinase/deoxyadenosine kinase YP_694533.1 71391 D 195103 CDS YP_694534.1 110800004 4203846 77726..78574 1 NC_008261.1 identified by similarity to SP:P15401; match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 78574 4203846 CPF_0069 Clostridium perfringens ATCC 13124 transcription antiterminator YP_694534.1 77726 D 195103 CDS YP_694535.1 110798827 4202486 complement(78607..79086) 1 NC_008261.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, N-acetylglucosamine-specific IIA component 79086 4202486 CPF_0070 Clostridium perfringens ATCC 13124 PTS system, N-acetylglucosamine-specific IIA component YP_694535.1 78607 R 195103 CDS YP_694536.1 110799623 4201497 79744..81189 1 NC_008261.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 81189 nagE 4201497 nagE Clostridium perfringens ATCC 13124 PTS system N-acetylglucosamine-specific transporter subunit IIBC YP_694536.1 79744 D 195103 CDS YP_694537.1 110799907 4203202 complement(81258..81776) 1 NC_008261.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 81776 4203202 CPF_0072 Clostridium perfringens ATCC 13124 TetR family transcriptional regulator YP_694537.1 81258 R 195103 CDS YP_694538.1 110800853 4201275 87896..89986 1 NC_008261.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 89986 fusA 4201275 fusA Clostridium perfringens ATCC 13124 elongation factor G YP_694538.1 87896 D 195103 CDS YP_694539.1 110799899 4203915 90409..90645 1 NC_008261.1 identified by similarity to PIR:G97292; hypothetical protein 90645 4203915 CPF_0075 Clostridium perfringens ATCC 13124 hypothetical protein YP_694539.1 90409 D 195103 CDS YP_694540.1 110800941 4202124 90897..91844 1 NC_008261.1 identified by similarity to SP:P54495; match to protein family HMM PF00480; glucokinase 91844 4202124 CPF_0076 Clostridium perfringens ATCC 13124 glucokinase YP_694540.1 90897 D 195103 CDS YP_694541.1 110801331 4201932 92386..92928 1 NC_008261.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 92928 4201932 CPF_0077 Clostridium perfringens ATCC 13124 rubredoxin/rubrerythrin YP_694541.1 92386 D 195103 CDS YP_694542.1 110800392 4201824 93261..93884 1 NC_008261.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase 93884 4201824 CPF_0078 Clostridium perfringens ATCC 13124 phosphoglycerate mutase YP_694542.1 93261 D 195103 CDS YP_694543.1 110799326 4202189 complement(94243..95013) 1 NC_008261.1 identified by similarity to SP:P46337; match to protein family HMM PF00455; match to protein family HMM PF08220; transcriptional regulator IolR 95013 4202189 CPF_0079 Clostridium perfringens ATCC 13124 transcriptional regulator IolR YP_694543.1 94243 R 195103 CDS YP_694544.1 110799131 4200962 95495..96649 1 NC_008261.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 96649 4200962 CPF_0080 Clostridium perfringens ATCC 13124 alcohol dehydrogenase YP_694544.1 95495 D 195103 CDS YP_694545.1 110800986 4201661 96656..97501 1 NC_008261.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 97501 4201661 CPF_0081 Clostridium perfringens ATCC 13124 fructose-bisphosphate aldolase YP_694545.1 96656 D 195103 CDS YP_694546.1 110800026 4203947 97515..98531 1 NC_008261.1 identified by similarity to SP:P42414; match to protein family HMM PF00294; myo-inositol catabolism protein IolC 98531 4203947 CPF_0082 Clostridium perfringens ATCC 13124 myo-inositol catabolism protein IolC YP_694546.1 97515 D 195103 CDS YP_694547.1 110798642 4201695 98545..99312 1 NC_008261.1 identified by similarity to SP:P42413; match to protein family HMM PF06845; myo-inositol catabolism protein IolB 99312 4201695 CPF_0083 Clostridium perfringens ATCC 13124 myo-inositol catabolism protein IolB YP_694547.1 98545 D 195103 CDS YP_694548.1 110801040 4201952 99329..101248 1 NC_008261.1 identified by similarity to SP:P42415; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; myo-inositol catabolism protein IolD 101248 iolD 4201952 iolD Clostridium perfringens ATCC 13124 myo-inositol catabolism protein IolD YP_694548.1 99329 D 195103 CDS YP_694549.1 110799733 4203164 101318..102325 1 NC_008261.1 identified by similarity to GB:AAC70005.1; match to protein family HMM PF01408; match to protein family HMM PF02894; myo-inositol 2-dehydrogenase 102325 4203164 CPF_0085 Clostridium perfringens ATCC 13124 myo-inositol 2-dehydrogenase YP_694549.1 101318 D 195103 CDS YP_694550.1 110800111 4202416 102444..103337 1 NC_008261.1 identified by similarity to SP:P42416; match to protein family HMM PF01261; myo-inositol catabolism protein IolE 103337 iolE 4202416 iolE Clostridium perfringens ATCC 13124 myo-inositol catabolism protein IolE YP_694550.1 102444 D 195103 CDS YP_694551.1 110800165 4203562 103419..105008 1 NC_008261.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 105008 4203562 CPF_0087 Clostridium perfringens ATCC 13124 symporter YidK YP_694551.1 103419 D 195103 CDS YP_694552.1 110799870 4202992 105096..106145 1 NC_008261.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 106145 4202992 CPF_0088 Clostridium perfringens ATCC 13124 Gfo/Idh/MocA family oxidoreductase YP_694552.1 105096 D 195103 CDS YP_694553.1 110801109 4203284 106517..107275 1 NC_008261.1 identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 107275 4203284 CPF_0089 Clostridium perfringens ATCC 13124 formate/nitrite transporter family protein YP_694553.1 106517 D 195103 CDS YP_694554.1 110801121 4201622 107507..108283 1 NC_008261.1 identified by similarity to SP:P52046; match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase 108283 4201622 CPF_0090 Clostridium perfringens ATCC 13124 3-hydroxybutyryl-CoA dehydratase YP_694554.1 107507 D 195103 CDS YP_694555.1 110799525 4203187 108386..109936 1 NC_008261.1 identified by similarity to GB:CAB77207.1; match to protein family HMM PF01144; propionate CoA-transferase 109936 4203187 CPF_0091 Clostridium perfringens ATCC 13124 propionate CoA-transferase YP_694555.1 108386 D 195103 CDS YP_694556.1 110798756 4200957 110040..111176 1 NC_008261.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 111176 4200957 CPF_0092 Clostridium perfringens ATCC 13124 butyryl-CoA dehydrogenase YP_694556.1 110040 D 195103 CDS YP_694557.1 110799996 4201266 complement(111587..111937) 1 NC_008261.1 identified by similarity to PIR:D75566; hypothetical protein 111937 4201266 CPF_0093 Clostridium perfringens ATCC 13124 hypothetical protein YP_694557.1 111587 R 195103 CDS YP_694558.1 110799394 4203269 112515..113645 1 NC_008261.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 113645 gldA 4203269 gldA Clostridium perfringens ATCC 13124 glycerol dehydrogenase YP_694558.1 112515 D 195103 CDS YP_694559.1 110799643 4202508 113671..115419 1 NC_008261.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 115419 4202508 CPF_0095 Clostridium perfringens ATCC 13124 dihydroxyacetone kinase YP_694559.1 113671 D 195103 CDS YP_694560.1 110798992 4201115 115780..117213 1 NC_008261.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 117213 4201115 CPF_0096 Clostridium perfringens ATCC 13124 EmrB/QacA family drug resistance transporter YP_694560.1 115780 D 195103 CDS YP_694561.1 110801270 4201577 117490..117762 1 NC_008261.1 hypothetical protein 117762 4201577 CPF_0097 Clostridium perfringens ATCC 13124 hypothetical protein YP_694561.1 117490 D 195103 CDS YP_694562.1 110800638 4201996 complement(118161..119114) 1 NC_008261.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 119114 ldh 4201996 ldh Clostridium perfringens ATCC 13124 L-lactate dehydrogenase YP_694562.1 118161 R 195103 CDS YP_694563.1 110799194 4202386 119740..120915 1 NC_008261.1 hypothetical protein 120915 4202386 CPF_0099 Clostridium perfringens ATCC 13124 hypothetical protein YP_694563.1 119740 D 195103 CDS YP_694564.1 110798663 4202302 121034..121474 1 NC_008261.1 hypothetical protein 121474 4202302 CPF_0100 Clostridium perfringens ATCC 13124 hypothetical protein YP_694564.1 121034 D 195103 CDS YP_694565.1 110800936 4202119 121682..122422 1 NC_008261.1 identified by match to protein family HMM PF06161; hypothetical protein 122422 4202119 CPF_0101 Clostridium perfringens ATCC 13124 hypothetical protein YP_694565.1 121682 D 195103 CDS YP_694566.1 110800459 4201542 122534..123406 1 NC_008261.1 identified by match to protein family HMM PF06161; hypothetical protein 123406 4201542 CPF_0102 Clostridium perfringens ATCC 13124 hypothetical protein YP_694566.1 122534 D 195103 CDS YP_694567.1 110798691 4202213 complement(123542..124864) 1 NC_008261.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein 124864 4202213 CPF_0103 Clostridium perfringens ATCC 13124 GTP-binding protein YP_694567.1 123542 R 195103 CDS YP_694568.1 110799136 4200967 complement(125634..125918) 1 NC_008261.1 hypothetical protein 125918 4200967 CPF_0104 Clostridium perfringens ATCC 13124 hypothetical protein YP_694568.1 125634 R 195103 CDS YP_694569.1 110800311 4202153 complement(126126..126362) 1 NC_008261.1 hypothetical protein 126362 4202153 CPF_0105 Clostridium perfringens ATCC 13124 hypothetical protein YP_694569.1 126126 R 195103 CDS YP_694570.1 110799003 4201863 complement(126740..128161) 1 NC_008261.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 128161 thiH 4201863 thiH Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiH YP_694570.1 126740 R 195103 CDS YP_694571.1 110799461 4201331 complement(128267..128518) 1 NC_008261.1 identified by similarity to GB:CAC39225.1; hypothetical protein 128518 4201331 CPF_0107 Clostridium perfringens ATCC 13124 hypothetical protein YP_694571.1 128267 R 195103 CDS YP_694572.1 110800767 4201619 128962..130527 1 NC_008261.1 identified by similarity to PIR:D97239; match to protein family HMM PF06207; hypothetical protein 130527 4201619 CPF_0108 Clostridium perfringens ATCC 13124 hypothetical protein YP_694572.1 128962 D 195103 CDS YP_694573.1 110800124 4203891 130674..130901 1 NC_008261.1 identified by similarity to GB:BAC14097.1; match to protein family HMM PF07872; hypothetical protein 130901 4203891 CPF_0109 Clostridium perfringens ATCC 13124 hypothetical protein YP_694573.1 130674 D 195103 CDS YP_694574.1 110798567 4202713 131194..131418 1 NC_008261.1 identified by similarity to GB:AAK76917.1; hypothetical protein 131418 4202713 CPF_0110 Clostridium perfringens ATCC 13124 hypothetical protein YP_694574.1 131194 D 195103 CDS YP_694575.1 110799774 4203517 complement(131476..132369) 1 NC_008261.1 identified by similarity to SP:P36548; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 132369 4203517 CPF_0111 Clostridium perfringens ATCC 13124 N-acetylmuramoyl-L-alanine amidase YP_694575.1 131476 R 195103 CDS YP_694576.1 110800644 4202002 complement(132430..133599) 1 NC_008261.1 hypothetical protein 133599 4202002 CPF_0112 Clostridium perfringens ATCC 13124 hypothetical protein YP_694576.1 132430 R 195103 CDS YP_694577.1 110799338 4202201 complement(133611..134861) 1 NC_008261.1 identified by similarity to PIR:F97297; hypothetical protein 134861 4202201 CPF_0113 Clostridium perfringens ATCC 13124 hypothetical protein YP_694577.1 133611 R 195103 CDS YP_694578.1 110799956 4203796 134977..135777 1 NC_008261.1 identified by similarity to PIR:C97028; hypothetical protein 135777 4203796 CPF_0114 Clostridium perfringens ATCC 13124 hypothetical protein YP_694578.1 134977 D 195103 CDS YP_694579.1 110800417 4202046 135917..136597 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 136597 4202046 CPF_0115 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_694579.1 135917 D 195103 CDS YP_694580.1 110801065 4201739 136594..137607 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 137607 4201739 CPF_0116 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_694580.1 136594 D 195103 CDS YP_694581.1 110799157 4202838 137659..137856 1 NC_008261.1 hypothetical protein 137856 4202838 CPF_0117 Clostridium perfringens ATCC 13124 hypothetical protein YP_694581.1 137659 D 195103 CDS YP_694582.1 110800915 4203597 138387..139157 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 139157 4203597 CPF_0118 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694582.1 138387 D 195103 CDS YP_694583.1 110800368 4201977 139147..141174 1 NC_008261.1 identified by match to protein family HMM PF02687; ABC transporter permease 141174 4201977 CPF_0119 Clostridium perfringens ATCC 13124 ABC transporter permease YP_694583.1 139147 D 195103 CDS YP_694584.1 110799196 4202388 complement(141583..142152) 1 NC_008261.1 hypothetical protein 142152 4202388 CPF_0120 Clostridium perfringens ATCC 13124 hypothetical protein YP_694584.1 141583 R 195103 CDS YP_694585.1 110799597 4203396 142244..142456 1 NC_008261.1 identified by similarity to PIR:F69799; hypothetical protein 142456 4203396 CPF_0121 Clostridium perfringens ATCC 13124 hypothetical protein YP_694585.1 142244 D 195103 CDS YP_694586.1 110798879 4203414 142898..147187 1 NC_008261.1 identified by match to protein family HMM PF05738; Cna B domain-containing protein 147187 4203414 CPF_0122 Clostridium perfringens ATCC 13124 Cna B domain-containing protein YP_694586.1 142898 D 195103 CDS YP_694587.1 110800193 4202970 147208..149112 1 NC_008261.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 149112 4202970 CPF_0123 Clostridium perfringens ATCC 13124 cell wall surface anchor family protein YP_694587.1 147208 D 195103 CDS YP_694588.1 110799718 4201202 149168..150046 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 150046 4201202 CPF_0124 Clostridium perfringens ATCC 13124 sortase YP_694588.1 149168 D 195103 CDS YP_694589.1 110800621 4202251 150467..150793 1 NC_008261.1 hypothetical protein 150793 4202251 CPF_0125 Clostridium perfringens ATCC 13124 hypothetical protein YP_694589.1 150467 D 195103 CDS YP_694590.1 110801381 4203462 151037..152053 1 NC_008261.1 identified by match to protein family HMM PF03595; C4-dicarboxylate transporter family protein 152053 4203462 CPF_0126 Clostridium perfringens ATCC 13124 C4-dicarboxylate transporter family protein YP_694590.1 151037 D 195103 CDS YP_694591.1 110801077 4201751 152568..153587 1 NC_008261.1 identified by match to protein family HMM PF03601; hypothetical protein 153587 4201751 CPF_0127 Clostridium perfringens ATCC 13124 hypothetical protein YP_694591.1 152568 D 195103 CDS YP_694592.1 110798640 4201693 153788..153940 1 NC_008261.1 hypothetical protein 153940 4201693 CPF_0128 Clostridium perfringens ATCC 13124 hypothetical protein YP_694592.1 153788 D 195103 CDS YP_694593.1 110799419 4202534 complement(154296..155189) 1 NC_008261.1 identified by match to protein family HMM PF00892; hypothetical protein 155189 4202534 CPF_0129 Clostridium perfringens ATCC 13124 hypothetical protein YP_694593.1 154296 R 195103 CDS YP_694594.1 110799435 4202550 155518..156756 1 NC_008261.1 identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 156756 4202550 CPF_0130 Clostridium perfringens ATCC 13124 competence damage-inducible protein A YP_694594.1 155518 D 195103 CDS YP_694595.1 110800789 4202225 157407..158333 1 NC_008261.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 158333 4202225 CPF_0131 Clostridium perfringens ATCC 13124 CAAX amino terminal protease YP_694595.1 157407 D 195103 CDS YP_694596.1 110800084 4202448 complement(158524..158793) 1 NC_008261.1 Selenoprotein; identified by match to protein family HMM PF01521; HesB-like domain-containing protein 158793 4202448 CPF_0132 Clostridium perfringens ATCC 13124 HesB-like domain-containing protein YP_694596.1 158524 R 195103 CDS YP_694597.1 110801055 4202607 159162..159749 1 NC_008261.1 identified by match to protein family HMM PF02915; rubrerythrin 159749 rbr 4202607 rbr Clostridium perfringens ATCC 13124 rubrerythrin YP_694597.1 159162 D 195103 CDS YP_694598.1 110798656 4202704 complement(159913..160458) 1 NC_008261.1 identified by similarity to GB:AAO34821.1; hypothetical protein 160458 4202704 CPF_0134 Clostridium perfringens ATCC 13124 hypothetical protein YP_694598.1 159913 R 195103 CDS YP_694599.1 110799931 4201455 160888..161013 1 NC_008261.1 hypothetical protein 161013 4201455 CPF_0135 Clostridium perfringens ATCC 13124 hypothetical protein YP_694599.1 160888 D 195103 CDS YP_694600.1 110800414 4202043 161277..162833 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 162833 4202043 CPF_0136 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694600.1 161277 D 195103 CDS YP_694601.1 110799670 4201717 complement(162871..163032) 1 NC_008261.1 hypothetical protein 163032 4201717 CPF_0137 Clostridium perfringens ATCC 13124 hypothetical protein YP_694601.1 162871 R 195103 CDS YP_694602.1 110800701 4203830 163213..164763 1 NC_008261.1 identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 164763 4203830 CPF_0138 Clostridium perfringens ATCC 13124 resolvase site-specific recombinase YP_694602.1 163213 D 195103 CDS YP_694603.1 110799020 4202270 165074..166159 1 NC_008261.1 identified by similarity to SP:P23737; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 166159 4202270 CPF_0139 Clostridium perfringens ATCC 13124 DNA-cytosine methyltransferase YP_694603.1 165074 D 195103 CDS YP_694604.1 110798956 4201369 166247..167071 1 NC_008261.1 identified by similarity to SP:P25257; type II restriction endonuclease 167071 4201369 CPF_0140 Clostridium perfringens ATCC 13124 type II restriction endonuclease YP_694604.1 166247 D 195103 CDS YP_694605.1 110801371 4203451 167148..167462 1 NC_008261.1 identified by similarity to GB:BAB62471.1; hypothetical protein 167462 4203451 CPF_0141 Clostridium perfringens ATCC 13124 hypothetical protein YP_694605.1 167148 D 195103 CDS YP_694606.1 110801408 4203489 167674..167946 1 NC_008261.1 hypothetical protein 167946 4203489 CPF_0142 Clostridium perfringens ATCC 13124 hypothetical protein YP_694606.1 167674 D 195103 CDS YP_694607.1 110800148 4203545 168292..169326 1 NC_008261.1 hypothetical protein 169326 4203545 CPF_0143 Clostridium perfringens ATCC 13124 hypothetical protein YP_694607.1 168292 D 195103 CDS YP_694608.1 110798576 4202722 169590..170042 1 NC_008261.1 hypothetical protein 170042 4202722 CPF_0144 Clostridium perfringens ATCC 13124 hypothetical protein YP_694608.1 169590 D 195103 CDS YP_694609.1 110800227 4202751 170504..171064 1 NC_008261.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 171064 kptA 4202751 kptA Clostridium perfringens ATCC 13124 RNA 2'-phosphotransferase-like protein YP_694609.1 170504 D 195103 CDS YP_694610.1 110799180 4202920 171485..173662 1 NC_008261.1 identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 173662 4202920 CPF_0146 Clostridium perfringens ATCC 13124 cell wall surface anchor family protein YP_694610.1 171485 D 195103 CDS YP_694611.1 110800491 4201966 173666..175234 1 NC_008261.1 identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738; surface protein 175234 4201966 CPF_0147 Clostridium perfringens ATCC 13124 surface protein YP_694611.1 173666 D 195103 CDS YP_694612.1 110799851 4203438 175661..176482 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 176482 4203438 CPF_0148 Clostridium perfringens ATCC 13124 sortase YP_694612.1 175661 D 195103 CDS YP_694613.1 110799552 4202649 176551..177462 1 NC_008261.1 identified by similarity to GB:AAO36679.1; hypothetical protein 177462 4202649 CPF_0149 Clostridium perfringens ATCC 13124 hypothetical protein YP_694613.1 176551 D 195103 CDS YP_694614.1 110801253 4203330 177937..178614 1 NC_008261.1 hypothetical protein 178614 4203330 CPF_0150 Clostridium perfringens ATCC 13124 hypothetical protein YP_694614.1 177937 D 195103 CDS YP_694615.1 110798916 4200980 178898..179554 1 NC_008261.1 hypothetical protein 179554 4200980 CPF_0151 Clostridium perfringens ATCC 13124 hypothetical protein YP_694615.1 178898 D 195103 CDS YP_694616.1 110799919 4203214 179631..180182 1 NC_008261.1 identified by similarity to GB:BAC70304.1; match to protein family HMM TIGR02464; hypothetical protein 180182 4203214 CPF_0152 Clostridium perfringens ATCC 13124 hypothetical protein YP_694616.1 179631 D 195103 CDS YP_694617.1 110800573 4201444 180208..180372 1 NC_008261.1 hypothetical protein 180372 4201444 CPF_0153 Clostridium perfringens ATCC 13124 hypothetical protein YP_694617.1 180208 D 195103 CDS YP_694618.1 110801199 4203120 complement(180384..181850) 1 NC_008261.1 identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043; hypothetical protein 181850 4203120 CPF_0154 Clostridium perfringens ATCC 13124 hypothetical protein YP_694618.1 180384 R 195103 CDS YP_694619.1 110798933 4200997 182521..183552 1 NC_008261.1 hypothetical protein 183552 4200997 CPF_0155 Clostridium perfringens ATCC 13124 hypothetical protein YP_694619.1 182521 D 195103 CDS YP_694620.1 110798884 4203419 184140..185642 1 NC_008261.1 identified by similarity to SP:P19995; match to protein family HMM PF01289; perfringolysin O 185642 4203419 CPF_0156 Clostridium perfringens ATCC 13124 perfringolysin O YP_694620.1 184140 D 195103 CDS YP_694621.1 110800486 4201960 185837..186295 1 NC_008261.1 hypothetical protein 186295 4201960 CPF_0157 Clostridium perfringens ATCC 13124 hypothetical protein YP_694621.1 185837 D 195103 CDS YP_694622.1 110800891 4202796 186367..186585 1 NC_008261.1 identified by similarity to GB:CAD62162.1; hypothetical protein 186585 4202796 CPF_0158 Clostridium perfringens ATCC 13124 hypothetical protein YP_694622.1 186367 D 195103 CDS YP_694623.1 110799203 4202395 187354..188841 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 188841 4202395 CPF_0159 Clostridium perfringens ATCC 13124 amino acid permease YP_694623.1 187354 D 195103 CDS YP_694624.1 110800290 4202873 189000..191069 1 NC_008261.1 identified by match to protein family HMM PF02449; beta-galactosidase 191069 4202873 CPF_0160 Clostridium perfringens ATCC 13124 beta-galactosidase YP_694624.1 189000 D 195103 CDS YP_694625.1 110800897 4202802 191622..192863 1 NC_008261.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 192863 arcA 4202802 arcA Clostridium perfringens ATCC 13124 arginine deiminase YP_694625.1 191622 D 195103 CDS YP_694626.1 110801213 4203134 192972..193967 1 NC_008261.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 193967 argF 4203134 argF Clostridium perfringens ATCC 13124 ornithine carbamoyltransferase YP_694626.1 192972 D 195103 CDS YP_694627.1 110799455 4201540 194112..195548 1 NC_008261.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR00905; arginine/ornithine antiporter 195548 arcD 4201540 arcD Clostridium perfringens ATCC 13124 arginine/ornithine antiporter YP_694627.1 194112 D 195103 CDS YP_694628.1 110800375 4201984 195609..196553 1 NC_008261.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 196553 arcC 4201984 arcC Clostridium perfringens ATCC 13124 carbamate kinase YP_694628.1 195609 D 195103 CDS YP_694629.1 110799118 4203048 196626..197081 1 NC_008261.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR 197081 argR 4203048 argR Clostridium perfringens ATCC 13124 arginine repressor ArgR YP_694629.1 196626 D 195103 CDS YP_694630.1 110798785 4201122 197623..200937 1 NC_008261.1 identified by similarity to SP:P43153; match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; collagenase 200937 colA 4201122 colA Clostridium perfringens ATCC 13124 collagenase YP_694630.1 197623 D 195103 CDS YP_694631.1 110800468 4201551 complement(201085..201543) 1 NC_008261.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 201543 mscL 4201551 mscL Clostridium perfringens ATCC 13124 large-conductance mechanosensitive channel YP_694631.1 201085 R 195103 CDS YP_694632.1 110799969 4203751 202287..202910 1 NC_008261.1 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 202910 4203751 CPF_0168 Clostridium perfringens ATCC 13124 UbiE/COQ5 family methlytransferase YP_694632.1 202287 D 195103 CDS YP_694633.1 110799169 4202909 202974..204128 1 NC_008261.1 identified by similarity to GB:AAF14695.1; match to protein family HMM PF01053; cystathionine beta-lyase 204128 metC 4202909 metC Clostridium perfringens ATCC 13124 cystathionine beta-lyase YP_694633.1 202974 D 195103 CDS YP_694634.1 110799998 4203840 204115..205023 1 NC_008261.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; cysteine synthase 205023 4203840 CPF_0170 Clostridium perfringens ATCC 13124 cysteine synthase YP_694634.1 204115 D 195103 CDS YP_694635.1 110799571 4203506 205108..205563 1 NC_008261.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 205563 luxS 4203506 luxS Clostridium perfringens ATCC 13124 S-ribosylhomocysteinase YP_694635.1 205108 D 195103 CDS YP_694636.1 110801286 4201593 205912..206886 1 NC_008261.1 identified by similarity to GB:AAC45283.1; match to protein family HMM PF07859; esterase 206886 4201593 CPF_0172 Clostridium perfringens ATCC 13124 esterase YP_694636.1 205912 D 195103 CDS YP_694637.1 110800654 4201698 complement(207270..208061) 1 NC_008261.1 identified by match to protein family HMM PF06182; hypothetical protein 208061 4201698 CPF_0173 Clostridium perfringens ATCC 13124 hypothetical protein YP_694637.1 207270 R 195103 CDS YP_694638.1 110799684 4201731 complement(208066..208884) 1 NC_008261.1 identified by match to protein family HMM PF06182; ABC transporter permease 208884 4201731 CPF_0174 Clostridium perfringens ATCC 13124 ABC transporter permease YP_694638.1 208066 R 195103 CDS YP_694639.1 110800514 4203369 complement(208887..209912) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 209912 4203369 CPF_0175 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694639.1 208887 R 195103 CDS YP_694640.1 110799541 4202638 210223..210891 1 NC_008261.1 identified by match to protein family HMM PF00881; nitroreductase 210891 4202638 CPF_0176 Clostridium perfringens ATCC 13124 nitroreductase YP_694640.1 210223 D 195103 CDS YP_694641.1 110800735 4201411 211176..211841 1 NC_008261.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 211841 nanE 4201411 nanE Clostridium perfringens ATCC 13124 N-acetylmannosamine-6-phosphate 2-epimerase YP_694641.1 211176 D 195103 CDS YP_694642.1 110800696 4203825 211878..212744 1 NC_008261.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 212744 nanA 4203825 nanA Clostridium perfringens ATCC 13124 N-acetylneuraminate lyase YP_694642.1 211878 D 195103 CDS YP_694643.1 110799712 4201196 212848..214365 1 NC_008261.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein 214365 4201196 CPF_0179 Clostridium perfringens ATCC 13124 sodium/solute symporter family protein YP_694643.1 212848 D 195103 CDS YP_694644.1 110799028 4202278 214476..214928 1 NC_008261.1 identified by similarity to GB:CAG20668.1; match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 214928 4202278 CPF_0180 Clostridium perfringens ATCC 13124 hypothetical protein YP_694644.1 214476 D 195103 CDS YP_694645.1 110800987 4201662 215084..215971 1 NC_008261.1 identified by match to protein family HMM PF00480; ROK family protein 215971 4201662 CPF_0181 Clostridium perfringens ATCC 13124 ROK family protein YP_694645.1 215084 D 195103 CDS YP_694646.1 110800351 4202018 216162..217001 1 NC_008261.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 217001 4202018 CPF_0182 Clostridium perfringens ATCC 13124 RpiR family transcriptional regulator YP_694646.1 216162 D 195103 CDS YP_694647.1 110799040 4201296 complement(217188..217577) 1 NC_008261.1 hypothetical protein 217577 4201296 CPF_0183 Clostridium perfringens ATCC 13124 hypothetical protein YP_694647.1 217188 R 195103 CDS YP_694648.1 110799673 4201720 217840..222723 1 NC_008261.1 identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; hyaluronidase 222723 nagH 4201720 nagH Clostridium perfringens ATCC 13124 hyaluronidase YP_694648.1 217840 D 195103 CDS YP_694649.1 110799393 4203268 223602..224345 1 NC_008261.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 224345 cbiM 4203268 cbiM Clostridium perfringens ATCC 13124 cobalt transport protein CbiM YP_694649.1 223602 D 195103 CDS YP_694650.1 110800614 4202244 224345..224656 1 NC_008261.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 224656 cbiN 4202244 cbiN Clostridium perfringens ATCC 13124 cobalt transport protein CbiN YP_694650.1 224345 D 195103 CDS YP_694651.1 110800998 4201673 224640..225410 1 NC_008261.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 225410 cbiQ 4201673 cbiQ Clostridium perfringens ATCC 13124 cobalt ABC transporter permease CbiQ YP_694651.1 224640 D 195103 CDS YP_694652.1 110798586 4201231 225425..226282 1 NC_008261.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 226282 cbiO 4201231 cbiO Clostridium perfringens ATCC 13124 cobalt transporter ATP-binding subunit YP_694652.1 225425 D 195103 CDS YP_694653.1 110798768 4201884 226838..227035 1 NC_008261.1 hypothetical protein 227035 4201884 CPF_0189 Clostridium perfringens ATCC 13124 hypothetical protein YP_694653.1 226838 D 195103 CDS YP_694654.1 110799595 4203394 complement(227239..228102) 1 NC_008261.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 228102 4203394 CPF_0190 Clostridium perfringens ATCC 13124 5'-nucleotidase YP_694654.1 227239 R 195103 CDS YP_694655.1 110801116 4203291 complement(228325..229524) 1 NC_008261.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 229524 4203291 CPF_0191 Clostridium perfringens ATCC 13124 M24/M37 family peptidase YP_694655.1 228325 R 195103 CDS YP_694656.1 110799038 4201294 230210..230866 1 NC_008261.1 hypothetical protein 230866 4201294 CPF_0192 Clostridium perfringens ATCC 13124 hypothetical protein YP_694656.1 230210 D 195103 CDS YP_694657.1 110798739 4202436 236809..237438 1 NC_008261.1 identified by similarity to GB:AAM23932.1; hypothetical protein 237438 4202436 CPF_0194 Clostridium perfringens ATCC 13124 hypothetical protein YP_694657.1 236809 D 195103 CDS YP_694658.1 110799183 4202923 237945..238214 1 NC_008261.1 identified by similarity to PIR:G97348; match to protein family HMM PF02583; hypothetical protein 238214 4202923 CPF_0195 Clostridium perfringens ATCC 13124 hypothetical protein YP_694658.1 237945 D 195103 CDS YP_694659.1 110800320 4202162 238273..238425 1 NC_008261.1 hypothetical protein 238425 4202162 CPF_0196 Clostridium perfringens ATCC 13124 hypothetical protein YP_694659.1 238273 D 195103 CDS YP_694660.1 110798974 4201097 239731..240312 1 NC_008261.1 hypothetical protein 240312 4201097 CPF_0197 Clostridium perfringens ATCC 13124 hypothetical protein YP_694660.1 239731 D 195103 CDS YP_694661.1 110799765 4203663 complement(240450..242825) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 242825 4203663 CPF_0198 Clostridium perfringens ATCC 13124 sensory box histidine kinase YP_694661.1 240450 R 195103 CDS YP_694662.1 110799561 4203496 243192..244250 1 NC_008261.1 identified by match to protein family HMM PF01757; acyltransferase 244250 4203496 CPF_0199 Clostridium perfringens ATCC 13124 acyltransferase YP_694662.1 243192 D 195103 CDS YP_694663.1 110798779 4201116 244351..244578 1 NC_008261.1 identified by similarity to GB:AAO91513.1; hypothetical protein 244578 4201116 CPF_0200 Clostridium perfringens ATCC 13124 hypothetical protein YP_694663.1 244351 D 195103 CDS YP_694664.1 110798892 4203427 244718..245599 1 NC_008261.1 hypothetical protein 245599 4203427 CPF_0201 Clostridium perfringens ATCC 13124 hypothetical protein YP_694664.1 244718 D 195103 CDS YP_694665.1 110800738 4201414 245609..247825 1 NC_008261.1 hypothetical protein 247825 4201414 CPF_0202 Clostridium perfringens ATCC 13124 hypothetical protein YP_694665.1 245609 D 195103 CDS YP_694666.1 110800495 4201970 248306..249076 1 NC_008261.1 hypothetical protein 249076 4201970 CPF_0203 Clostridium perfringens ATCC 13124 hypothetical protein YP_694666.1 248306 D 195103 CDS YP_694667.1 110799519 4203181 complement(249255..250070) 1 NC_008261.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 250070 4203181 CPF_0204 Clostridium perfringens ATCC 13124 mechanosensitive ion channel family protein YP_694667.1 249255 R 195103 CDS YP_694668.1 110801171 4201031 complement(250644..251288) 1 NC_008261.1 identified by match to protein family HMM PF01126; heme oxygenase 251288 4201031 CPF_0205 Clostridium perfringens ATCC 13124 heme oxygenase YP_694668.1 250644 R 195103 CDS YP_694669.1 110801233 4203310 251689..252912 1 NC_008261.1 identified by similarity to SP:P13457; match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 252912 4203310 CPF_0206 Clostridium perfringens ATCC 13124 nuclease SbcCD subunit D YP_694669.1 251689 D 195103 CDS YP_694670.1 110799531 4203193 252899..256417 1 NC_008261.1 identified by similarity to SP:P13458; match to protein family HMM PF02463; exonuclease SbcC 256417 sbcC 4203193 sbcC Clostridium perfringens ATCC 13124 exonuclease SbcC YP_694670.1 252899 D 195103 CDS YP_694671.1 110798893 4203428 256823..258019 1 NC_008261.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 258019 ackA 4203428 ackA Clostridium perfringens ATCC 13124 acetate kinase YP_694671.1 256823 D 195103 CDS YP_694672.1 110800803 4202239 complement(258066..258824) 1 NC_008261.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 258824 4202239 CPF_0209 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_694672.1 258066 R 195103 CDS YP_694673.1 110798858 4201136 258971..261202 1 NC_008261.1 identified by match to protein family HMM TIGR01167; cell wall anchor domain-containing protein 261202 4201136 CPF_0210 Clostridium perfringens ATCC 13124 cell wall anchor domain-containing protein YP_694673.1 258971 D 195103 CDS YP_694674.1 110800129 4203896 261265..261912 1 NC_008261.1 iron transporter 261912 4203896 CPF_0211 Clostridium perfringens ATCC 13124 iron transporter YP_694674.1 261265 D 195103 CDS YP_694675.1 110799875 4202997 261914..262477 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 262477 4202997 CPF_0212 Clostridium perfringens ATCC 13124 sortase YP_694675.1 261914 D 195103 CDS YP_694676.1 110799242 4201811 262491..263378 1 NC_008261.1 identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein 263378 4201811 CPF_0213 Clostridium perfringens ATCC 13124 iron chelate uptake ABC transporter solute-binding protein YP_694676.1 262491 D 195103 CDS YP_694677.1 110799906 4203201 263365..264351 1 NC_008261.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 264351 4203201 CPF_0214 Clostridium perfringens ATCC 13124 iron ABC transporter permease YP_694677.1 263365 D 195103 CDS YP_694678.1 110798589 4201234 264352..265131 1 NC_008261.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 265131 4201234 CPF_0215 Clostridium perfringens ATCC 13124 iron ABC transporter ATP-binding protein YP_694678.1 264352 D 195103 CDS YP_694679.1 110800704 4203833 265173..266900 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 266900 4203833 CPF_0216 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694679.1 265173 D 195103 CDS YP_694680.1 110801114 4203289 266901..268589 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 268589 4203289 CPF_0217 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694680.1 266901 D 195103 CDS YP_694681.1 110800664 4201708 268576..268971 1 NC_008261.1 identified by similarity to GB:AAS11534.1; match to protein family HMM PF04304; hypothetical protein 268971 4201708 CPF_0218 Clostridium perfringens ATCC 13124 hypothetical protein YP_694681.1 268576 D 195103 CDS YP_694682.1 110799818 4203696 268946..269251 1 NC_008261.1 identified by similarity to GB:AAO79602.1; hypothetical protein 269251 4203696 CPF_0219 Clostridium perfringens ATCC 13124 hypothetical protein YP_694682.1 268946 D 195103 CDS YP_694683.1 110798625 4201678 269379..269564 1 NC_008261.1 identified by match to protein family HMM PF04324; (Fe-S)-binding protein 269564 4201678 CPF_0220 Clostridium perfringens ATCC 13124 (Fe-S)-binding protein YP_694683.1 269379 D 195103 CDS YP_694684.1 110799572 4203507 269876..271321 1 NC_008261.1 can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase; arylsulfatase 271321 4203507 CPF_0221 Clostridium perfringens ATCC 13124 arylsulfatase YP_694684.1 269876 D 195103 CDS YP_694685.1 110800199 4202976 complement(271479..272816) 1 NC_008261.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 272816 4202976 CPF_0222 Clostridium perfringens ATCC 13124 glycerol-3-phosphate transporter YP_694685.1 271479 R 195103 CDS YP_694686.1 110801336 4203219 complement(273017..274036) 1 NC_008261.1 iron compound ABC transporter iron compound-binding protein 274036 4203219 CPF_0223 Clostridium perfringens ATCC 13124 iron compound ABC transporter iron compound-binding protein YP_694686.1 273017 R 195103 CDS YP_694687.1 110799079 4201047 complement(274017..274805) 1 NC_008261.1 identified by similarity to GB:AAS44277.1; hypothetical protein 274805 4201047 CPF_0224 Clostridium perfringens ATCC 13124 hypothetical protein YP_694687.1 274017 R 195103 CDS YP_694688.1 110799110 4203040 complement(274798..276228) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 276228 4203040 CPF_0225 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_694688.1 274798 R 195103 CDS YP_694689.1 110799909 4203204 complement(276218..276889) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 276889 4203204 CPF_0226 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_694689.1 276218 R 195103 CDS YP_694690.1 110800775 4201761 277181..278380 1 NC_008261.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 278380 4201761 CPF_0227 Clostridium perfringens ATCC 13124 monovalent cation:proton antiporter-2 (CPA2) family protein YP_694690.1 277181 D 195103 CDS YP_694691.1 110798694 4202216 278633..279160 1 NC_008261.1 hypothetical protein 279160 4202216 CPF_0228 Clostridium perfringens ATCC 13124 hypothetical protein YP_694691.1 278633 D 195103 CDS YP_694692.1 110800571 4201442 279534..280310 1 NC_008261.1 hypothetical protein 280310 4201442 CPF_0230 Clostridium perfringens ATCC 13124 hypothetical protein YP_694692.1 279534 D 195103 CDS YP_694693.1 110801375 4203456 280728..282158 1 NC_008261.1 hypothetical protein 282158 4203456 CPF_0231 Clostridium perfringens ATCC 13124 hypothetical protein YP_694693.1 280728 D 195103 CDS YP_694694.1 110799601 4203401 282161..282853 1 NC_008261.1 hypothetical protein 282853 4203401 CPF_0232 Clostridium perfringens ATCC 13124 hypothetical protein YP_694694.1 282161 D 195103 CDS YP_694695.1 110798714 4201320 complement(282910..283785) 1 NC_008261.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 283785 4201320 CPF_0233 Clostridium perfringens ATCC 13124 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase YP_694695.1 282910 R 195103 CDS YP_694696.1 110800030 4203951 complement(283778..285256) 1 NC_008261.1 hypothetical protein 285256 4203951 CPF_0234 Clostridium perfringens ATCC 13124 hypothetical protein YP_694696.1 283778 R 195103 CDS YP_694697.1 110799960 4203742 complement(285401..285733) 1 NC_008261.1 hypothetical protein 285733 4203742 CPF_0235 Clostridium perfringens ATCC 13124 hypothetical protein YP_694697.1 285401 R 195103 CDS YP_694698.1 110799168 4202908 complement(285726..286064) 1 NC_008261.1 hypothetical protein 286064 4202908 CPF_0236 Clostridium perfringens ATCC 13124 hypothetical protein YP_694698.1 285726 R 195103 CDS YP_694699.1 110801209 4203130 complement(286074..286709) 1 NC_008261.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 286709 4203130 CPF_0237 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_694699.1 286074 R 195103 CDS YP_694700.1 110800404 4202033 complement(287113..289440) 1 NC_008261.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 289440 4202033 CPF_0238 Clostridium perfringens ATCC 13124 diguanylate cyclase YP_694700.1 287113 R 195103 CDS YP_694701.1 110800039 4203706 289694..290962 1 NC_008261.1 identified by match to protein family HMM PF00226; dnaJ domain-containing protein 290962 4203706 CPF_0239 Clostridium perfringens ATCC 13124 dnaJ domain-containing protein YP_694701.1 289694 D 195103 CDS YP_694702.1 110799398 4203273 290980..291582 1 NC_008261.1 co-chaperone GrpE 291582 4203273 CPF_0240 Clostridium perfringens ATCC 13124 co-chaperone GrpE YP_694702.1 290980 D 195103 CDS YP_694703.1 110799928 4201452 291570..293297 1 NC_008261.1 identified by match to protein family HMM PF00012; molecular chaperone DnaK 293297 4201452 CPF_0241 Clostridium perfringens ATCC 13124 molecular chaperone DnaK YP_694703.1 291570 D 195103 CDS YP_694704.1 110800000 4203842 293315..294049 1 NC_008261.1 hypothetical protein 294049 4203842 CPF_0242 Clostridium perfringens ATCC 13124 hypothetical protein YP_694704.1 293315 D 195103 CDS YP_694705.1 110800983 4201658 294321..295094 1 NC_008261.1 identified by similarity to GB:AAC45230.1; match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein 295094 4201658 CPF_0243 Clostridium perfringens ATCC 13124 capsular polysaccharide biosynthesis protein YP_694705.1 294321 D 195103 CDS YP_694706.1 110798897 4202128 295409..296731 1 NC_008261.1 lipoprotein 296731 4202128 CPF_0244 Clostridium perfringens ATCC 13124 lipoprotein YP_694706.1 295409 D 195103 CDS YP_694707.1 110801172 4201032 complement(296804..297214) 1 NC_008261.1 identified by similarity to GB:AAO34832.1; hypothetical protein 297214 4201032 CPF_0245 Clostridium perfringens ATCC 13124 hypothetical protein YP_694707.1 296804 R 195103 CDS YP_694708.1 110799256 4202080 297388..297573 1 NC_008261.1 identified by similarity to GB:AAS44038.1; hypothetical protein 297573 4202080 CPF_0246 Clostridium perfringens ATCC 13124 hypothetical protein YP_694708.1 297388 D 195103 CDS YP_694709.1 110798605 4202732 297586..297834 1 NC_008261.1 identified by similarity to GB:AAP11869.1; match to protein family HMM PF07875; hypothetical protein 297834 4202732 CPF_0247 Clostridium perfringens ATCC 13124 hypothetical protein YP_694709.1 297586 D 195103 CDS YP_694710.1 110799406 4201160 complement(297919..298233) 1 NC_008261.1 identified by similarity to GB:AAM06508.1; hypothetical protein 298233 4201160 CPF_0248 Clostridium perfringens ATCC 13124 hypothetical protein YP_694710.1 297919 R 195103 CDS YP_694711.1 110800837 4203929 complement(298370..299101) 1 NC_008261.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 299101 4203929 CPF_0249 Clostridium perfringens ATCC 13124 NAD-dependent deacetylase YP_694711.1 298370 R 195103 CDS YP_694712.1 110799117 4203047 299317..300459 1 NC_008261.1 identified by similarity to GB:AAQ66620.1; match to protein family HMM PF04313; hypothetical protein 300459 4203047 CPF_0250 Clostridium perfringens ATCC 13124 hypothetical protein YP_694712.1 299317 D 195103 CDS YP_694713.1 110800905 4203587 300718..301332 1 NC_008261.1 identified by similarity to SP:P07464; match to protein family HMM PF00132; galactoside O-acetyltransferase 301332 lacA 4203587 lacA Clostridium perfringens ATCC 13124 galactoside O-acetyltransferase YP_694713.1 300718 D 195103 CDS YP_694714.1 110798653 4202701 301576..302058 1 NC_008261.1 identified by match to protein family HMM PF02559; CarD family transcriptional regulator 302058 4202701 CPF_0252 Clostridium perfringens ATCC 13124 CarD family transcriptional regulator YP_694714.1 301576 D 195103 CDS YP_694715.1 110799766 4203509 302242..303378 1 NC_008261.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 303378 4203509 CPF_0253 Clostridium perfringens ATCC 13124 mechanosensitive ion channel family protein YP_694715.1 302242 D 195103 CDS YP_694716.1 110800438 4203818 303375..303998 1 NC_008261.1 identified by match to protein family HMM PF03932; CutC family protein 303998 4203818 CPF_0254 Clostridium perfringens ATCC 13124 CutC family protein YP_694716.1 303375 D 195103 CDS YP_694717.1 110799328 4202191 304374..304574 1 NC_008261.1 hypothetical protein 304574 4202191 CPF_0255 Clostridium perfringens ATCC 13124 hypothetical protein YP_694717.1 304374 D 195103 CDS YP_694718.1 110799955 4203795 complement(304695..306008) 1 NC_008261.1 identified by match to protein family HMM PF07613; hypothetical protein 306008 4203795 CPF_0256 Clostridium perfringens ATCC 13124 hypothetical protein YP_694718.1 304695 R 195103 CDS YP_694719.1 110800823 4201093 complement(306226..306522) 1 NC_008261.1 hypothetical protein 306522 4201093 CPF_0257 Clostridium perfringens ATCC 13124 hypothetical protein YP_694719.1 306226 R 195103 CDS YP_694720.1 110798755 4200956 complement(306730..307407) 1 NC_008261.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 307407 ung 4200956 ung Clostridium perfringens ATCC 13124 uracil-DNA glycosylase YP_694720.1 306730 R 195103 CDS YP_694721.1 110798758 4200959 307745..310282 1 NC_008261.1 identified by similarity to GB:BAA32403.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM TIGR01167; beta-N-acetylhexosaminidase 310282 4200959 CPF_0259 Clostridium perfringens ATCC 13124 beta-N-acetylhexosaminidase YP_694721.1 307745 D 195103 CDS YP_694722.1 110801399 4203480 complement(316026..316493) 1 NC_008261.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 316493 4203480 CPF_0261 Clostridium perfringens ATCC 13124 anti-oxidant AhpCTSA family protein YP_694722.1 316026 R 195103 CDS YP_694723.1 110800910 4203592 317140..317886 1 NC_008261.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 317886 4203592 CPF_0262 Clostridium perfringens ATCC 13124 peptidyl-prolyl cis-trans isomerase YP_694723.1 317140 D 195103 CDS YP_694724.1 110800101 4202406 318350..319162 1 NC_008261.1 identified by match to protein family HMM PF01061; ABC-2 type transporter permease 319162 4202406 CPF_0263 Clostridium perfringens ATCC 13124 ABC-2 type transporter permease YP_694724.1 318350 D 195103 CDS YP_694725.1 110799827 4203725 319180..320352 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 320352 4203725 CPF_0264 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694725.1 319180 D 195103 CDS YP_694726.1 110799217 4201222 320366..321649 1 NC_008261.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 321649 4201222 CPF_0265 Clostridium perfringens ATCC 13124 glycoside hydrolase family protein YP_694726.1 320366 D 195103 CDS YP_694727.1 110801173 4201033 321668..322903 1 NC_008261.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 322903 4201033 CPF_0266 Clostridium perfringens ATCC 13124 glycoside hydrolase family protein YP_694727.1 321668 D 195103 CDS YP_694728.1 110800473 4201556 322917..324098 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 324098 4201556 CPF_0267 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694728.1 322917 D 195103 CDS YP_694729.1 110798632 4201685 324213..325646 1 NC_008261.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 325646 4201685 CPF_0268 Clostridium perfringens ATCC 13124 glycoside hydrolase family protein YP_694729.1 324213 D 195103 CDS YP_694730.1 110800922 4203604 complement(325782..326435) 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; haloacid dehalogenase 326435 4203604 CPF_0269 Clostridium perfringens ATCC 13124 haloacid dehalogenase YP_694730.1 325782 R 195103 CDS YP_694731.1 110799862 4203449 complement(326518..327867) 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 327867 4203449 CPF_0270 Clostridium perfringens ATCC 13124 [Fe] hydrogenase YP_694731.1 326518 R 195103 CDS YP_694732.1 110800546 4202898 328002..328148 1 NC_008261.1 hypothetical protein 328148 4202898 CPF_0271 Clostridium perfringens ATCC 13124 hypothetical protein YP_694732.1 328002 D 195103 CDS YP_694733.1 110801149 4201009 328565..328855 1 NC_008261.1 hypothetical protein 328855 4201009 CPF_0273 Clostridium perfringens ATCC 13124 hypothetical protein YP_694733.1 328565 D 195103 CDS YP_694734.1 110799311 4203147 329040..330338 1 NC_008261.1 identified by similarity to GB:AAF86217.1; match to protein family HMM PF00877; SagA protein 330338 4203147 CPF_0274 Clostridium perfringens ATCC 13124 SagA protein YP_694734.1 329040 D 195103 CDS YP_694735.1 110800155 4203552 330533..331282 1 NC_008261.1 identified by similarity to GB:AAM23407.1; match to protein family HMM PF05175; hypothetical protein 331282 4203552 CPF_0275 Clostridium perfringens ATCC 13124 hypothetical protein YP_694735.1 330533 D 195103 CDS YP_694736.1 110799114 4203044 331285..332127 1 NC_008261.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 332127 4203044 CPF_0276 Clostridium perfringens ATCC 13124 tetrapyrrole methylase YP_694736.1 331285 D 195103 CDS YP_694737.1 110799964 4203746 complement(332413..332652) 1 NC_008261.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 332652 4203746 CPF_0277 Clostridium perfringens ATCC 13124 AbrB family transcriptional regulator YP_694737.1 332413 R 195103 CDS YP_694738.1 110799146 4200977 333343..333942 1 NC_008261.1 identified by similarity to GB:AAK78295.1; hypothetical protein 333942 4200977 CPF_0278 Clostridium perfringens ATCC 13124 hypothetical protein YP_694738.1 333343 D 195103 CDS YP_694739.1 110801432 4203028 complement(333978..334853) 1 NC_008261.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 334853 4203028 CPF_0279 Clostridium perfringens ATCC 13124 aldose 1-epimerase YP_694739.1 333978 R 195103 CDS YP_694740.1 110800801 4202237 complement(334964..335986) 1 NC_008261.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 335986 4202237 CPF_0280 Clostridium perfringens ATCC 13124 transcriptional regulator YP_694740.1 334964 R 195103 CDS YP_694741.1 110799841 4203739 336162..337013 1 NC_008261.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein 337013 4203739 CPF_0281 Clostridium perfringens ATCC 13124 hypothetical protein YP_694741.1 336162 D 195103 CDS YP_694742.1 110800926 4202109 complement(337074..338060) 1 NC_008261.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 338060 galE 4202109 galE Clostridium perfringens ATCC 13124 UDP-glucose 4-epimerase YP_694742.1 337074 R 195103 CDS YP_694743.1 110800314 4202156 338214..338558 1 NC_008261.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein 338558 4202156 CPF_0283 Clostridium perfringens ATCC 13124 single-strand DNA-binding protein YP_694743.1 338214 D 195103 CDS YP_694744.1 110799321 4203157 complement(338634..339833) 1 NC_008261.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase 339833 4203157 CPF_0284 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_694744.1 338634 R 195103 CDS YP_694745.1 110798707 4201313 complement(340337..343744) 1 NC_008261.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167; endo-beta-N-acetylglucosaminidase 343744 4201313 CPF_0285 Clostridium perfringens ATCC 13124 endo-beta-N-acetylglucosaminidase YP_694745.1 340337 R 195103 CDS YP_694746.1 110800609 4203583 344115..344420 1 NC_008261.1 identified by similarity to PIR:A96960; hypothetical protein 344420 4203583 CPF_0286 Clostridium perfringens ATCC 13124 hypothetical protein YP_694746.1 344115 D 195103 CDS YP_694747.1 110799665 4202589 344469..344870 1 NC_008261.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 344870 acpS 4202589 acpS Clostridium perfringens ATCC 13124 4'-phosphopantetheinyl transferase YP_694747.1 344469 D 195103 CDS YP_694748.1 110800114 4203881 344857..346356 1 NC_008261.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase 346356 4203881 CPF_0288 Clostridium perfringens ATCC 13124 carbohydrate kinase YP_694748.1 344857 D 195103 CDS YP_694749.1 110800962 4203351 346417..347010 1 NC_008261.1 identified by similarity to PIR:D96960; hypothetical protein 347010 4203351 CPF_0289 Clostridium perfringens ATCC 13124 hypothetical protein YP_694749.1 346417 D 195103 CDS YP_694750.1 110798582 4202728 347257..347499 1 NC_008261.1 identified by similarity to GB:AAM25326.1; hypothetical protein 347499 4202728 CPF_0290 Clostridium perfringens ATCC 13124 hypothetical protein YP_694750.1 347257 D 195103 CDS YP_694751.1 110799555 4203490 347505..347858 1 NC_008261.1 identified by match to protein family HMM PF02452; PemK family protein 347858 4203490 CPF_0291 Clostridium perfringens ATCC 13124 PemK family protein YP_694751.1 347505 D 195103 CDS YP_694752.1 110800728 4202475 348296..349120 1 NC_008261.1 identified by similarity to SP:Q58094; match to protein family HMM PF00456; transketolase 349120 4202475 CPF_0292 Clostridium perfringens ATCC 13124 transketolase YP_694752.1 348296 D 195103 CDS YP_694753.1 110801343 4203226 349120..350064 1 NC_008261.1 identified by similarity to SP:Q58092; match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 350064 4203226 CPF_0293 Clostridium perfringens ATCC 13124 transketolase, C-terminal subunit YP_694753.1 349120 D 195103 CDS YP_694754.1 110799646 4202512 350183..350275 1 NC_008261.1 hypothetical protein 350275 4202512 CPF_0294 Clostridium perfringens ATCC 13124 hypothetical protein YP_694754.1 350183 D 195103 CDS YP_694755.1 110801007 4201352 350291..351148 1 NC_008261.1 identified by match to protein family HMM PF02588; hypothetical protein 351148 4201352 CPF_0295 Clostridium perfringens ATCC 13124 hypothetical protein YP_694755.1 350291 D 195103 CDS YP_694756.1 110798725 4202422 351354..352040 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 352040 4202422 CPF_0296 Clostridium perfringens ATCC 13124 cell division ATP-binding protein FtsE YP_694756.1 351354 D 195103 CDS YP_694757.1 110801282 4201589 352030..352938 1 NC_008261.1 identified by similarity to SP:O34876; match to protein family HMM PF02687; cell division protein 352938 4201589 CPF_0297 Clostridium perfringens ATCC 13124 cell division protein YP_694757.1 352030 D 195103 CDS YP_694758.1 110800692 4203821 353027..354313 1 NC_008261.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 354313 4203821 CPF_0298 Clostridium perfringens ATCC 13124 carboxyl-terminal protease YP_694758.1 353027 D 195103 CDS YP_694759.1 110799688 4203372 354336..355616 1 NC_008261.1 hypothetical protein 355616 4203372 CPF_0299 Clostridium perfringens ATCC 13124 hypothetical protein YP_694759.1 354336 D 195103 CDS YP_694760.1 110799055 4202558 355704..357683 1 NC_008261.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 357683 uvrB 4202558 uvrB Clostridium perfringens ATCC 13124 excinuclease ABC subunit B YP_694760.1 355704 D 195103 CDS YP_694761.1 110798772 4201888 357949..358800 1 NC_008261.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 358800 4201888 CPF_0301 Clostridium perfringens ATCC 13124 degV family protein YP_694761.1 357949 D 195103 CDS YP_694762.1 110800792 4202228 359036..359761 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 359761 4202228 CPF_0302 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694762.1 359036 D 195103 CDS YP_694763.1 110800164 4203561 359754..361352 1 NC_008261.1 identified by similarity to GB:AAP10268.1; ABC transporter permease 361352 4203561 CPF_0303 Clostridium perfringens ATCC 13124 ABC transporter permease YP_694763.1 359754 D 195103 CDS YP_694764.1 110800490 4201965 361573..362577 1 NC_008261.1 identified by similarity to GB:AAL47055.1; lipase 362577 4201965 CPF_0304 Clostridium perfringens ATCC 13124 lipase YP_694764.1 361573 D 195103 CDS YP_694765.1 110799781 4203524 362736..364301 1 NC_008261.1 identified by match to protein family HMM PF00488; MutS domain-containing protein 364301 4203524 CPF_0305 Clostridium perfringens ATCC 13124 MutS domain-containing protein YP_694765.1 362736 D 195103 CDS YP_694766.2 261876163 4201334 364316..365002 1 NC_008261.1 identified by match to protein family HMM PF07729; FCD domain-containing protein 365002 4201334 CPF_0306 Clostridium perfringens ATCC 13124 FCD domain-containing protein YP_694766.2 364316 D 195103 CDS YP_694767.2 261876151 4202022 365231..366763 1 NC_008261.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 366763 lctP 4202022 lctP Clostridium perfringens ATCC 13124 L-lactate permease YP_694767.2 365231 D 195103 CDS YP_694768.1 110800800 4202236 366858..367646 1 NC_008261.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 367646 4202236 CPF_0308 Clostridium perfringens ATCC 13124 electron transfer flavoprotein subunit beta/FixA family protein YP_694768.1 366858 D 195103 CDS YP_694769.1 110798724 4202421 367659..368852 1 NC_008261.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 368852 4202421 CPF_0309 Clostridium perfringens ATCC 13124 electron transfer flavoprotein subunit alpha/FixB family protein YP_694769.1 367659 D 195103 CDS YP_694770.1 110799740 4203171 368854..370254 1 NC_008261.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 370254 4203171 CPF_0310 Clostridium perfringens ATCC 13124 glycolate oxidase subunit GlcD YP_694770.1 368854 D 195103 CDS YP_694771.1 110800580 4202346 complement(370338..370736) 1 NC_008261.1 identified by similarity to GB:AAO75282.1; hypothetical protein 370736 4202346 CPF_0311 Clostridium perfringens ATCC 13124 hypothetical protein YP_694771.1 370338 R 195103 CDS YP_694772.1 110799424 4202539 371104..371613 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 371613 4202539 CPF_0312 Clostridium perfringens ATCC 13124 signal peptidase I YP_694772.1 371104 D 195103 CDS YP_694773.1 110800240 4202764 371637..372149 1 NC_008261.1 hypothetical protein 372149 4202764 CPF_0313 Clostridium perfringens ATCC 13124 hypothetical protein YP_694773.1 371637 D 195103 CDS YP_694774.1 110800932 4202115 complement(372276..372656) 1 NC_008261.1 identified by similarity to GB:AAS41741.1; hypothetical protein 372656 4202115 CPF_0314 Clostridium perfringens ATCC 13124 hypothetical protein YP_694774.1 372276 R 195103 CDS YP_694775.1 110798666 4202305 372975..373649 1 NC_008261.1 identified by match to protein family HMM PF06161; hypothetical protein 373649 4202305 CPF_0315 Clostridium perfringens ATCC 13124 hypothetical protein YP_694775.1 372975 D 195103 CDS YP_694776.1 110800594 4203568 complement(373842..374465) 1 NC_008261.1 DedA family protein 374465 4203568 CPF_0316 Clostridium perfringens ATCC 13124 DedA family protein YP_694776.1 373842 R 195103 CDS YP_694777.1 110801417 4203013 complement(374562..377219) 1 NC_008261.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type 377219 4203013 CPF_0317 Clostridium perfringens ATCC 13124 cation-transporting ATPase, P-type YP_694777.1 374562 R 195103 CDS YP_694778.1 110799859 4203446 377759..378556 1 NC_008261.1 identified by similarity to GB:BAD77164.1; match to protein family HMM PF01987; match to protein family HMM TIGR00266; hypothetical protein 378556 4203446 CPF_0318 Clostridium perfringens ATCC 13124 hypothetical protein YP_694778.1 377759 D 195103 CDS YP_694779.1 110799402 4201156 379116..379688 1 NC_008261.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 379688 xpt 4201156 xpt Clostridium perfringens ATCC 13124 xanthine phosphoribosyltransferase YP_694779.1 379116 D 195103 CDS YP_694780.1 110798991 4201114 380174..381106 1 NC_008261.1 identified by match to protein family HMM PF00892; hypothetical protein 381106 4201114 CPF_0320 Clostridium perfringens ATCC 13124 hypothetical protein YP_694780.1 380174 D 195103 CDS YP_694781.1 110801135 4201636 381297..382679 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 382679 4201636 CPF_0321 Clostridium perfringens ATCC 13124 amino acid permease YP_694781.1 381297 D 195103 CDS YP_694782.1 110801099 4202868 complement(383008..384312) 1 NC_008261.1 identified by match to protein family HMM PF04087; hypothetical protein 384312 4202868 CPF_0322 Clostridium perfringens ATCC 13124 hypothetical protein YP_694782.1 383008 R 195103 CDS YP_694783.1 110800551 4202903 384584..385969 1 NC_008261.1 identified by match to protein family HMM PF01523; TldD/PmbA family protein 385969 4202903 CPF_0323 Clostridium perfringens ATCC 13124 TldD/PmbA family protein YP_694783.1 384584 D 195103 CDS YP_694784.1 110799708 4201192 385985..387334 1 NC_008261.1 identified by match to protein family HMM PF01523; TldD/PmbA family protein 387334 4201192 CPF_0324 Clostridium perfringens ATCC 13124 TldD/PmbA family protein YP_694784.1 385985 D 195103 CDS YP_694785.1 110799096 4202816 387643..389229 1 NC_008261.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 389229 4202816 CPF_0325 Clostridium perfringens ATCC 13124 aspartate aminotransferase YP_694785.1 387643 D 195103 CDS YP_694786.1 110798674 4202313 389547..390023 1 NC_008261.1 identified by similarity to SP:P19220; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 390023 ogt 4202313 ogt Clostridium perfringens ATCC 13124 methylated-DNA-[protein]-cysteine S-methyltransferase YP_694786.1 389547 D 195103 CDS YP_694787.1 110799107 4202827 390072..392246 1 NC_008261.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 392246 recQ 4202827 recQ Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase RecQ YP_694787.1 390072 D 195103 CDS YP_694788.1 110799986 4201256 392334..392462 1 NC_008261.1 hypothetical protein 392462 4201256 CPF_0328 Clostridium perfringens ATCC 13124 hypothetical protein YP_694788.1 392334 D 195103 CDS YP_694789.1 110800443 4202363 392477..393274 1 NC_008261.1 identified by match to protein family HMM PF02274; amidinotransferase 393274 4202363 CPF_0329 Clostridium perfringens ATCC 13124 amidinotransferase YP_694789.1 392477 D 195103 CDS YP_694790.1 110801163 4201023 393418..394857 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 394857 4201023 CPF_0330 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_694790.1 393418 D 195103 CDS YP_694791.1 110799210 4201214 395023..395772 1 NC_008261.1 identified by similarity to SP:P32184; match to protein family HMM PF00376; match to protein family HMM PF07739; transcriptional activator tipA 395772 4201214 CPF_0331 Clostridium perfringens ATCC 13124 transcriptional activator tipA YP_694791.1 395023 D 195103 CDS YP_694792.1 110799860 4203447 395893..396303 1 NC_008261.1 identified by similarity to GB:AAM24863.1; hypothetical protein 396303 4203447 CPF_0332 Clostridium perfringens ATCC 13124 hypothetical protein YP_694792.1 395893 D 195103 CDS YP_694793.1 110801392 4203473 396319..396723 1 NC_008261.1 identified by similarity to GB:AAM24861.1; hypothetical protein 396723 4203473 CPF_0333 Clostridium perfringens ATCC 13124 hypothetical protein YP_694793.1 396319 D 195103 CDS YP_694794.1 110800539 4202891 396713..396997 1 NC_008261.1 hypothetical protein 396997 4202891 CPF_0334 Clostridium perfringens ATCC 13124 hypothetical protein YP_694794.1 396713 D 195103 CDS YP_694795.1 110799690 4203374 397006..397377 1 NC_008261.1 hypothetical protein 397377 4203374 CPF_0335 Clostridium perfringens ATCC 13124 hypothetical protein YP_694795.1 397006 D 195103 CDS YP_694796.1 110801091 4202860 complement(397452..398123) 1 NC_008261.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 398123 4202860 CPF_0336 Clostridium perfringens ATCC 13124 cyclic nucleotide-binding domain-containing protein YP_694796.1 397452 R 195103 CDS YP_694797.1 110800317 4202159 399068..401887 1 NC_008261.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 401887 uvrA 4202159 uvrA Clostridium perfringens ATCC 13124 excinuclease ABC subunit A YP_694797.1 399068 D 195103 CDS YP_694798.1 110799962 4203744 402221..402655 1 NC_008261.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 402655 4203744 CPF_0338 Clostridium perfringens ATCC 13124 FHA domain-containing protein YP_694798.1 402221 D 195103 CDS YP_694799.1 110798670 4202309 402669..403898 1 NC_008261.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 403898 4202309 CPF_0339 Clostridium perfringens ATCC 13124 cell cycle protein FtsW YP_694799.1 402669 D 195103 CDS YP_694800.1 110801067 4201741 403899..405362 1 NC_008261.1 identified by match to protein family HMM PF00905; penicillin-binding protein 405362 4201741 CPF_0340 Clostridium perfringens ATCC 13124 penicillin-binding protein YP_694800.1 403899 D 195103 CDS YP_694801.1 110800325 4202089 405519..407381 1 NC_008261.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 407381 uvrC 4202089 uvrC Clostridium perfringens ATCC 13124 excinuclease ABC subunit C YP_694801.1 405519 D 195103 CDS YP_694802.1 110798584 4202730 407530..408444 1 NC_008261.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 408444 murB 4202730 murB Clostridium perfringens ATCC 13124 UDP-N-acetylenolpyruvoylglucosamine reductase YP_694802.1 407530 D 195103 CDS YP_694803.1 110801000 4201675 408684..409568 1 NC_008261.1 identified by similarity to GB:AAO36958.1; match to protein family HMM PF03668; hypothetical protein 409568 4201675 CPF_0343 Clostridium perfringens ATCC 13124 hypothetical protein YP_694803.1 408684 D 195103 CDS YP_694804.1 110798732 4202429 410913..411863 1 NC_008261.1 identified by similarity to PIR:B96963; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 411863 4202429 CPF_0345 Clostridium perfringens ATCC 13124 hypothetical protein YP_694804.1 410913 D 195103 CDS YP_694805.1 110800626 4202256 412037..412591 1 NC_008261.1 lioprotein 412591 4202256 CPF_0346 Clostridium perfringens ATCC 13124 lioprotein YP_694805.1 412037 D 195103 CDS YP_694806.1 110798645 4202693 414446..415225 1 NC_008261.1 identified by similarity to GB:AAP09652.1; hypothetical protein 415225 4202693 CPF_0348 Clostridium perfringens ATCC 13124 hypothetical protein YP_694806.1 414446 D 195103 CDS YP_694807.1 110798701 4202223 418374..419333 1 NC_008261.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 419333 pfkA 4202223 pfkA Clostridium perfringens ATCC 13124 6-phosphofructokinase YP_694807.1 418374 D 195103 CDS YP_694808.1 110799327 4202190 419427..420830 1 NC_008261.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 420830 pyk 4202190 pyk Clostridium perfringens ATCC 13124 pyruvate kinase YP_694808.1 419427 D 195103 CDS YP_694809.1 110800312 4202154 421410..421766 1 NC_008261.1 identified by match to protein family HMM PF07561; hypothetical protein 421766 4202154 CPF_0352 Clostridium perfringens ATCC 13124 hypothetical protein YP_694809.1 421410 D 195103 CDS YP_694810.1 110801074 4201748 422075..422872 1 NC_008261.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 422872 4201748 CPF_0353 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_694810.1 422075 D 195103 CDS YP_694811.1 110798654 4202702 423044..424579 1 NC_008261.1 identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 424579 cls 4202702 cls Clostridium perfringens ATCC 13124 cardiolipin synthetase YP_694811.1 423044 D 195103 CDS YP_694812.1 110799289 4202619 complement(424786..424944) 1 NC_008261.1 identified by similarity to PIR:F97334; match to protein family HMM PF07561; hypothetical protein 424944 4202619 CPF_0355 Clostridium perfringens ATCC 13124 hypothetical protein YP_694812.1 424786 R 195103 CDS YP_694813.1 110800292 4202876 425211..426773 1 NC_008261.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 426773 4202876 CPF_0356 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_694813.1 425211 D 195103 CDS YP_694814.1 110800984 4201659 427075..428442 1 NC_008261.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 428442 rumA 4201659 rumA Clostridium perfringens ATCC 13124 23S rRNA (uracil-5-)-methyltransferase RumA YP_694814.1 427075 D 195103 CDS YP_694815.1 110799033 4201289 complement(428816..429070) 1 NC_008261.1 hypothetical protein 429070 4201289 CPF_0358 Clostridium perfringens ATCC 13124 hypothetical protein YP_694815.1 428816 R 195103 CDS YP_694816.1 110799679 4201726 429345..431828 1 NC_008261.1 identified by similarity to GB:AAB85057.1; hypothetical protein 431828 4201726 CPF_0359 Clostridium perfringens ATCC 13124 hypothetical protein YP_694816.1 429345 D 195103 CDS YP_694817.1 110799584 4202682 432083..432409 1 NC_008261.1 hypothetical protein 432409 4202682 CPF_0360 Clostridium perfringens ATCC 13124 hypothetical protein YP_694817.1 432083 D 195103 CDS YP_694818.1 110798791 4201128 432472..434523 1 NC_008261.1 identified by match to protein family HMM PF01555; type III restriction-modification system, Mod subunit 434523 4201128 CPF_0361 Clostridium perfringens ATCC 13124 type III restriction-modification system, Mod subunit YP_694818.1 432472 D 195103 CDS YP_694819.1 110800765 4201617 434536..437700 1 NC_008261.1 identified by match to protein family HMM PF04851; type III restriction-modification system, res subunit 437700 4201617 CPF_0362 Clostridium perfringens ATCC 13124 type III restriction-modification system, res subunit YP_694819.1 434536 D 195103 CDS YP_694820.1 110800590 4202356 438159..438710 1 NC_008261.1 hypothetical protein 438710 4202356 CPF_0363 Clostridium perfringens ATCC 13124 hypothetical protein YP_694820.1 438159 D 195103 CDS YP_694821.2 261876160 4201462 438829..439407 1 NC_008261.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 439407 4201462 CPF_0364 Clostridium perfringens ATCC 13124 TetR family transcriptional regulator YP_694821.2 438829 D 195103 CDS YP_694822.1 110801226 4203303 439756..441549 1 NC_008261.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 441549 4203303 CPF_0365 Clostridium perfringens ATCC 13124 hypothetical protein YP_694822.1 439756 D 195103 CDS YP_694823.1 110800909 4203591 441948..443681 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 443681 4203591 CPF_0366 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694823.1 441948 D 195103 CDS YP_694824.1 110800287 4202870 443674..445455 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 445455 4202870 CPF_0367 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694824.1 443674 D 195103 CDS YP_694825.1 110799357 4203095 complement(445536..445934) 1 NC_008261.1 identified by match to protein family HMM PF02915; hypothetical protein 445934 4203095 CPF_0368 Clostridium perfringens ATCC 13124 hypothetical protein YP_694825.1 445536 R 195103 CDS YP_694826.1 110799035 4201291 446200..447228 1 NC_008261.1 identified by match to protein family HMM PF01183; glycosyl hydrolase 447228 4201291 CPF_0369 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_694826.1 446200 D 195103 CDS YP_694827.1 110799809 4203687 447486..447884 1 NC_008261.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; toxin secretion/phage lysis holin 447884 4203687 CPF_0370 Clostridium perfringens ATCC 13124 toxin secretion/phage lysis holin YP_694827.1 447486 D 195103 CDS YP_694828.1 110800493 4201968 complement(447929..448999) 1 NC_008261.1 FAD/NAD(P)-binding domain; oxidoreductase 448999 4201968 CPF_0371 Clostridium perfringens ATCC 13124 oxidoreductase YP_694828.1 447929 R 195103 CDS YP_694829.1 110799482 4202326 complement(449260..450180) 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 450180 4202326 CPF_0372 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_694829.1 449260 R 195103 CDS YP_694830.1 110801037 4201949 450585..451403 1 NC_008261.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 451403 4201949 CPF_0373 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_694830.1 450585 D 195103 CDS YP_694831.1 110801281 4201588 complement(451426..452157) 1 NC_008261.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 452157 4201588 CPF_0374 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_694831.1 451426 R 195103 CDS YP_694832.1 110800653 4201697 452392..453177 1 NC_008261.1 identified by similarity to SP:P12758; match to protein family HMM PF01048; match to protein family HMM TIGR01718; uridine phosphorylase 453177 udp 4201697 udp Clostridium perfringens ATCC 13124 uridine phosphorylase YP_694832.1 452392 D 195103 CDS YP_694833.1 110799655 4202579 453344..454534 1 NC_008261.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 454534 deoB 4202579 deoB Clostridium perfringens ATCC 13124 phosphopentomutase YP_694833.1 453344 D 195103 CDS YP_694834.1 110800162 4203559 complement(454962..456407) 1 NC_008261.1 identified by match to protein family HMM PF00324; match to protein family HMM PF01490; arginine/ornithine antiporter 456407 4203559 CPF_0377 Clostridium perfringens ATCC 13124 arginine/ornithine antiporter YP_694834.1 454962 R 195103 CDS YP_694835.1 110801059 4202611 complement(456453..457415) 1 NC_008261.1 identified by match to protein family HMM PF02329; match to protein family HMM TIGR00541; histidine decarboxylase, pyruvoyl type 457415 4202611 CPF_0378 Clostridium perfringens ATCC 13124 histidine decarboxylase, pyruvoyl type YP_694835.1 456453 R 195103 CDS YP_694836.1 110801068 4201742 457883..458716 1 NC_008261.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 458716 4201742 CPF_0379 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_694836.1 457883 D 195103 CDS YP_694837.1 110799687 4201734 458841..458993 1 NC_008261.1 hypothetical protein 458993 4201734 CPF_0380 Clostridium perfringens ATCC 13124 hypothetical protein YP_694837.1 458841 D 195103 CDS YP_694838.1 110800693 4203822 459461..460324 1 NC_008261.1 identified by similarity to SP:P23523; match to protein family HMM PF03446; 2-hydroxy-3-oxopropionate reductase 460324 garR 4203822 garR Clostridium perfringens ATCC 13124 2-hydroxy-3-oxopropionate reductase YP_694838.1 459461 D 195103 CDS YP_694839.1 110801236 4203313 460631..461536 1 NC_008261.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 461536 nadA 4203313 nadA Clostridium perfringens ATCC 13124 quinolinate synthetase YP_694839.1 460631 D 195103 CDS YP_694840.1 110798799 4201775 461541..462860 1 NC_008261.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 462860 nadB 4201775 nadB Clostridium perfringens ATCC 13124 L-aspartate oxidase YP_694840.1 461541 D 195103 CDS YP_694841.1 110799313 4203149 462817..463656 1 NC_008261.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 463656 nadC 4203149 nadC Clostridium perfringens ATCC 13124 nicotinate-nucleotide pyrophosphorylase YP_694841.1 462817 D 195103 CDS YP_694842.1 110800295 4202879 complement(463973..465331) 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 465331 4202879 CPF_0385 Clostridium perfringens ATCC 13124 uracil-xanthine permease YP_694842.1 463973 R 195103 CDS YP_694843.1 110799608 4203408 466007..466825 1 NC_008261.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 466825 4203408 CPF_0386 Clostridium perfringens ATCC 13124 purine nucleoside phosphorylase YP_694843.1 466007 D 195103 CDS YP_694844.1 110799814 4203692 466915..467592 1 NC_008261.1 identified by similarity to SP:P31215; match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter PnuC 467592 4203692 CPF_0387 Clostridium perfringens ATCC 13124 nicotinamide mononucleotide transporter PnuC YP_694844.1 466915 D 195103 CDS YP_694845.1 110801018 4201363 467626..468267 1 NC_008261.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 468267 4201363 CPF_0388 Clostridium perfringens ATCC 13124 cyclic nucleotide-binding protein YP_694845.1 467626 D 195103 CDS YP_694846.1 110798577 4202723 468492..468809 1 NC_008261.1 hypothetical protein 468809 4202723 CPF_0389 Clostridium perfringens ATCC 13124 hypothetical protein YP_694846.1 468492 D 195103 CDS YP_694847.1 110799808 4203686 468822..469433 1 NC_008261.1 hypothetical protein 469433 4203686 CPF_0390 Clostridium perfringens ATCC 13124 hypothetical protein YP_694847.1 468822 D 195103 CDS YP_694848.1 110800267 4203607 469640..470176 1 NC_008261.1 identified by similarity to GB:AAO35738.1; hypothetical protein 470176 4203607 CPF_0391 Clostridium perfringens ATCC 13124 hypothetical protein YP_694848.1 469640 D 195103 CDS YP_694849.1 110799521 4203183 470911..472248 1 NC_008261.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 472248 brnQ 4203183 brnQ Clostridium perfringens ATCC 13124 branched-chain amino acid transport system II carrier protein YP_694849.1 470911 D 195103 CDS YP_694850.1 110800528 4201184 472504..473376 1 NC_008261.1 identified by match to protein family HMM PF02588; hypothetical protein 473376 4201184 CPF_0393 Clostridium perfringens ATCC 13124 hypothetical protein YP_694850.1 472504 D 195103 CDS YP_694851.1 110801222 4203299 473690..476701 1 NC_008261.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02278; match to protein family HMM PF08124; match to protein family HMM TIGR01167; polysaccharide lyase 8 476701 4203299 CPF_0394 Clostridium perfringens ATCC 13124 polysaccharide lyase 8 YP_694851.1 473690 D 195103 CDS YP_694852.1 110801102 4203277 476808..477638 1 NC_008261.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 477638 kduI 4203277 kduI Clostridium perfringens ATCC 13124 5-keto-4-deoxyuronate isomerase YP_694852.1 476808 D 195103 CDS YP_694853.1 110799221 4201226 477654..478430 1 NC_008261.1 Involved in the metabolism of 2-deoxyglucose; 2-deoxy-D-gluconate 3-dehydrogenase 478430 kduD 4201226 kduD Clostridium perfringens ATCC 13124 2-deoxy-D-gluconate 3-dehydrogenase YP_694853.1 477654 D 195103 CDS YP_694854.1 110799831 4203729 478427..479068 1 NC_008261.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 479068 4203729 CPF_0397 Clostridium perfringens ATCC 13124 2-dehydro-3-deoxyphosphogluconate aldolase YP_694854.1 478427 D 195103 CDS YP_694855.1 110800090 4202454 479072..480091 1 NC_008261.1 identified by match to protein family HMM PF00294; PfkB family kinase 480091 4202454 CPF_0398 Clostridium perfringens ATCC 13124 PfkB family kinase YP_694855.1 479072 D 195103 CDS YP_694856.1 110800815 4201085 480256..481086 1 NC_008261.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 481086 kduI 4201085 kduI Clostridium perfringens ATCC 13124 5-keto-4-deoxyuronate isomerase YP_694856.1 480256 D 195103 CDS YP_694857.1 110798842 4201470 481103..482293 1 NC_008261.1 identified by similarity to GB:BAA84216.1; match to protein family HMM PF07470; glucuronyl hydrolase 482293 4201470 CPF_0400 Clostridium perfringens ATCC 13124 glucuronyl hydrolase YP_694857.1 481103 D 195103 CDS YP_694858.1 110800810 4201080 482310..482798 1 NC_008261.1 identified by match to protein family HMM PF03830; PTS system mannose/fructose/sorbose family transporter subunit IIB 482798 4201080 CPF_0401 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IIB YP_694858.1 482310 D 195103 CDS YP_694859.1 110798568 4202714 482846..483637 1 NC_008261.1 identified by match to protein family HMM PF03609; PTS system mannose/fructose/sorbose family transporter subunit IIC 483637 4202714 CPF_0402 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IIC YP_694859.1 482846 D 195103 CDS YP_694860.1 110800494 4201969 483627..484436 1 NC_008261.1 identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID 484436 4201969 CPF_0403 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IID YP_694860.1 483627 D 195103 CDS YP_694861.1 110800190 4202967 484506..484919 1 NC_008261.1 identified by match to protein family HMM PF03610; PTS system mannose/fructose/sorbose family transporter subunit IIA 484919 4202967 CPF_0404 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IIA YP_694861.1 484506 D 195103 CDS YP_694862.1 110799395 4203270 484922..485200 1 NC_008261.1 identified by match to protein family HMM PF02699; preprotein translocase subunit YajC 485200 4203270 CPF_0405 Clostridium perfringens ATCC 13124 preprotein translocase subunit YajC YP_694862.1 484922 D 195103 CDS YP_694863.1 110798789 4201126 485340..487358 1 NC_008261.1 identified by match to protein family HMM PF07940; heparinase II/III-like protein 487358 4201126 CPF_0406 Clostridium perfringens ATCC 13124 heparinase II/III-like protein YP_694863.1 485340 D 195103 CDS YP_694864.1 110801218 4203295 487392..488405 1 NC_008261.1 identified by match to protein family HMM PF00532; LacI family transcriptional regulator 488405 4203295 CPF_0407 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_694864.1 487392 D 195103 CDS YP_694865.1 110800379 4201988 488700..490046 1 NC_008261.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031; reticuline oxidase 490046 4201988 CPF_0408 Clostridium perfringens ATCC 13124 reticuline oxidase YP_694865.1 488700 D 195103 CDS YP_694866.1 110799856 4203443 490346..490699 1 NC_008261.1 identified by similarity to GB:AAO80898.1; hypothetical protein 490699 4203443 CPF_0409 Clostridium perfringens ATCC 13124 hypothetical protein YP_694866.1 490346 D 195103 CDS YP_694867.1 110800863 4201285 490894..491718 1 NC_008261.1 identified by similarity to GB:AAM24960.1; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 491718 4201285 CPF_0410 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_694867.1 490894 D 195103 CDS YP_694868.1 110800110 4202415 491866..493287 1 NC_008261.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD-binding 493287 4202415 CPF_0411 Clostridium perfringens ATCC 13124 oxidoreductase, FAD-binding YP_694868.1 491866 D 195103 CDS YP_694869.1 110800610 4203584 493292..494182 1 NC_008261.1 identified by similarity to GB:AAO36901.1; match to protein family HMM PF07992; oxidoreductase 494182 4203584 CPF_0412 Clostridium perfringens ATCC 13124 oxidoreductase YP_694869.1 493292 D 195103 CDS YP_694870.1 110799976 4203759 494423..494800 1 NC_008261.1 identified by similarity to GB:AAK47746.1; hypothetical protein 494800 4203759 CPF_0413 Clostridium perfringens ATCC 13124 hypothetical protein YP_694870.1 494423 D 195103 CDS YP_694871.1 110799007 4201867 495016..495588 1 NC_008261.1 identified by match to protein family HMM PF00484; carbonic anhydrase 495588 4201867 CPF_0414 Clostridium perfringens ATCC 13124 carbonic anhydrase YP_694871.1 495016 D 195103 CDS YP_694872.1 110800395 4201827 495732..496370 1 NC_008261.1 identified by similarity to GB:AAN58407.1; match to protein family HMM PF06541; hypothetical protein 496370 4201827 CPF_0415 Clostridium perfringens ATCC 13124 hypothetical protein YP_694872.1 495732 D 195103 CDS YP_694873.1 110799929 4201453 496395..496784 1 NC_008261.1 identified by similarity to GB:AAO36906.1; hypothetical protein 496784 4201453 CPF_0416 Clostridium perfringens ATCC 13124 hypothetical protein YP_694873.1 496395 D 195103 CDS YP_694874.1 110800989 4201664 497117..498988 1 NC_008261.1 molecular chaperone; heat shock protein 90 498988 hsp90 4201664 hsp90 Clostridium perfringens ATCC 13124 heat shock protein 90 YP_694874.1 497117 D 195103 CDS YP_694875.1 110798764 4201880 499216..500817 1 NC_008261.1 identified by similarity to GB:AAK81170.1; hypothetical protein 500817 4201880 CPF_0418 Clostridium perfringens ATCC 13124 hypothetical protein YP_694875.1 499216 D 195103 CDS YP_694876.1 110798749 4200949 500854..501573 1 NC_008261.1 identified by similarity to GB:AAK56814.1; hypothetical protein 501573 4200949 CPF_0419 Clostridium perfringens ATCC 13124 hypothetical protein YP_694876.1 500854 D 195103 CDS YP_694877.1 110799161 4202842 501760..502752 1 NC_008261.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 502752 4202842 CPF_0420 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_694877.1 501760 D 195103 CDS YP_694878.1 110798775 4201891 503188..504852 1 NC_008261.1 identified by similarity to SP:P29094; match to protein family HMM PF00128; oligo-1,6-glucosidase 504852 4201891 CPF_0421 Clostridium perfringens ATCC 13124 oligo-1,6-glucosidase YP_694878.1 503188 D 195103 CDS YP_694879.1 110799845 4203432 505111..506766 1 NC_008261.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003; PTS system transporter subunit IIBC 506766 4203432 CPF_0422 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIBC YP_694879.1 505111 D 195103 CDS YP_694880.1 110800029 4203950 506777..507568 1 NC_008261.1 identified by match to protein family HMM PF03372; hypothetical protein 507568 4203950 CPF_0423 Clostridium perfringens ATCC 13124 hypothetical protein YP_694880.1 506777 D 195103 CDS YP_694881.1 110800595 4203569 508224..508961 1 NC_008261.1 identified by similarity to SP:P37965; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 508961 4203569 CPF_0424 Clostridium perfringens ATCC 13124 glycerophosphoryl diester phosphodiesterase YP_694881.1 508224 D 195103 CDS YP_694882.1 110801181 4203102 509058..510344 1 NC_008261.1 identified by similarity to SP:P46907; match to protein family HMM PF07690; major facilitator family protein 510344 4203102 CPF_0425 Clostridium perfringens ATCC 13124 major facilitator family protein YP_694882.1 509058 D 195103 CDS YP_694883.1 110799207 4201211 510845..513457 1 NC_008261.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573; helicase, UvrD/REP/exonuclease 513457 4201211 CPF_0426 Clostridium perfringens ATCC 13124 helicase, UvrD/REP/exonuclease YP_694883.1 510845 D 195103 CDS YP_694884.1 110799838 4203736 513634..514293 1 NC_008261.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 514293 trmB 4203736 trmB Clostridium perfringens ATCC 13124 tRNA (guanine-N(7)-)-methyltransferase YP_694884.1 513634 D 195103 CDS YP_694885.1 110800851 4201273 514812..516095 1 NC_008261.1 identified by similarity to PIR:AG1527; match to protein family HMM PF06824; hypothetical protein 516095 4201273 CPF_0428 Clostridium perfringens ATCC 13124 hypothetical protein YP_694885.1 514812 D 195103 CDS YP_694886.1 110799008 4201868 516563..517141 1 NC_008261.1 hypothetical protein 517141 4201868 CPF_0429 Clostridium perfringens ATCC 13124 hypothetical protein YP_694886.1 516563 D 195103 CDS YP_694887.1 110798702 4201308 517372..517527 1 NC_008261.1 hypothetical protein 517527 4201308 CPF_0430 Clostridium perfringens ATCC 13124 hypothetical protein YP_694887.1 517372 D 195103 CDS YP_694888.1 110799324 4202187 517919..518446 1 NC_008261.1 hypothetical protein 518446 4202187 CPF_0431 Clostridium perfringens ATCC 13124 hypothetical protein YP_694888.1 517919 D 195103 CDS YP_694889.1 110801367 4203251 complement(518534..519076) 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 519076 lepB 4203251 lepB Clostridium perfringens ATCC 13124 signal peptidase I YP_694889.1 518534 R 195103 CDS YP_694890.1 110799225 4201794 519284..520126 1 NC_008261.1 identified by similarity to GB:AAP09437.1; hypothetical protein 520126 4201794 CPF_0433 Clostridium perfringens ATCC 13124 hypothetical protein YP_694890.1 519284 D 195103 CDS YP_694891.1 110798997 4201857 520409..521248 1 NC_008261.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 521248 4201857 CPF_0434 Clostridium perfringens ATCC 13124 alpha/beta hydrolase YP_694891.1 520409 D 195103 CDS YP_694892.1 110799959 4203799 521332..522627 1 NC_008261.1 identified by match to protein family HMM PF07656; lipoprotein 522627 4203799 CPF_0435 Clostridium perfringens ATCC 13124 lipoprotein YP_694892.1 521332 D 195103 CDS YP_694893.1 110800283 4203623 523004..523492 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 523492 4203623 CPF_0436 Clostridium perfringens ATCC 13124 acetyltransferase YP_694893.1 523004 D 195103 CDS YP_694894.1 110801263 4201570 complement(523551..523886) 1 NC_008261.1 identified by similarity to PIR:G97099; hypothetical protein 523886 4201570 CPF_0437 Clostridium perfringens ATCC 13124 hypothetical protein YP_694894.1 523551 R 195103 CDS YP_694895.1 110800770 4201756 complement(523892..524308) 1 NC_008261.1 identified by similarity to GB:AAT04397.1; hypothetical protein 524308 4201756 CPF_0438 Clostridium perfringens ATCC 13124 hypothetical protein YP_694895.1 523892 R 195103 CDS YP_694896.1 110799963 4203745 524854..526191 1 NC_008261.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 526191 4203745 CPF_0439 Clostridium perfringens ATCC 13124 CBS/transporter associated domain-containing protein YP_694896.1 524854 D 195103 CDS YP_694897.1 110800446 4202366 526466..527518 1 NC_008261.1 identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547; iron ABC transporter substrate-binding protein 527518 4202366 CPF_0440 Clostridium perfringens ATCC 13124 iron ABC transporter substrate-binding protein YP_694897.1 526466 D 195103 CDS YP_694898.1 110800907 4203589 527509..529110 1 NC_008261.1 identified by similarity to SP:P71338; match to protein family HMM PF00528; iron ABC transporter permease 529110 4203589 CPF_0441 Clostridium perfringens ATCC 13124 iron ABC transporter permease YP_694898.1 527509 D 195103 CDS YP_694899.1 110798924 4200988 529113..529793 1 NC_008261.1 identified by similarity to GB:AAL94516.1; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 529793 4200988 CPF_0442 Clostridium perfringens ATCC 13124 iron ABC transporter ATP-binding protein YP_694899.1 529113 D 195103 CDS YP_694900.1 110799509 4202062 530116..530775 1 NC_008261.1 identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite/nitrite reductase 530775 4202062 CPF_0443 Clostridium perfringens ATCC 13124 sulfite/nitrite reductase YP_694900.1 530116 D 195103 CDS YP_694901.1 110800024 4203945 530965..531138 1 NC_008261.1 identified by match to protein family HMM PF04324; BFD-like iron-sulfur cluster-binding protein 531138 4203945 CPF_0444 Clostridium perfringens ATCC 13124 BFD-like iron-sulfur cluster-binding protein YP_694901.1 530965 D 195103 CDS YP_694902.1 110801406 4203487 531404..531775 1 NC_008261.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 531775 4203487 CPF_0445 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_694902.1 531404 D 195103 CDS YP_694903.1 110799106 4202826 531809..532672 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 532672 4202826 CPF_0446 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_694903.1 531809 D 195103 CDS YP_694904.1 110799803 4202669 532674..533300 1 NC_008261.1 identified by similarity to GB:AAP28153.1; hypothetical protein 533300 4202669 CPF_0447 Clostridium perfringens ATCC 13124 hypothetical protein YP_694904.1 532674 D 195103 CDS YP_694905.1 110800425 4203805 533302..533970 1 NC_008261.1 identified by similarity to GB:AAS12417.1; hypothetical protein 533970 4203805 CPF_0448 Clostridium perfringens ATCC 13124 hypothetical protein YP_694905.1 533302 D 195103 CDS YP_694906.1 110798591 4201236 534086..534466 1 NC_008261.1 identified by match to protein family HMM PF00903; lactoylglutathione lyase 534466 4201236 CPF_0449 Clostridium perfringens ATCC 13124 lactoylglutathione lyase YP_694906.1 534086 D 195103 CDS YP_694907.1 110799222 4201227 complement(534603..535460) 1 NC_008261.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 535460 4201227 CPF_0450 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_694907.1 534603 R 195103 CDS YP_694908.1 110799824 4203702 535649..536797 1 NC_008261.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 536797 4203702 CPF_0451 Clostridium perfringens ATCC 13124 alcohol dehydrogenase YP_694908.1 535649 D 195103 CDS YP_694909.1 110800477 4201560 536987..537310 1 NC_008261.1 identified by similarity to GB:AAO35553.1; hypothetical protein 537310 4201560 CPF_0452 Clostridium perfringens ATCC 13124 hypothetical protein YP_694909.1 536987 D 195103 CDS YP_694910.1 110801088 4202857 537424..537816 1 NC_008261.1 identified by similarity to GB:AAP24625.1; match to protein family HMM PF00903; glyoxalase 537816 4202857 CPF_0453 Clostridium perfringens ATCC 13124 glyoxalase YP_694910.1 537424 D 195103 CDS YP_694911.1 110801230 4203307 538113..540347 1 NC_008261.1 identified by similarity to GB:AAS41916.1; match to protein family HMM PF06347; hypothetical protein 540347 4203307 CPF_0454 Clostridium perfringens ATCC 13124 hypothetical protein YP_694911.1 538113 D 195103 CDS YP_694912.1 110800598 4203572 complement(540545..541330) 1 NC_008261.1 identified by similarity to SP:P39075; match to protein family HMM PF00376; MerR family transcriptional regulator 541330 4203572 CPF_0455 Clostridium perfringens ATCC 13124 MerR family transcriptional regulator YP_694912.1 540545 R 195103 CDS YP_694913.1 110800015 4203858 541443..543263 1 NC_008261.1 hypothetical protein 543263 4203858 CPF_0456 Clostridium perfringens ATCC 13124 hypothetical protein YP_694913.1 541443 D 195103 CDS YP_694914.1 110800642 4202000 543568..544077 1 NC_008261.1 DedA family protein 544077 4202000 CPF_0457 Clostridium perfringens ATCC 13124 DedA family protein YP_694914.1 543568 D 195103 CDS YP_694915.1 110798667 4202306 544136..544768 1 NC_008261.1 identified by similarity to GB:AAL95465.1; hypothetical protein 544768 4202306 CPF_0458 Clostridium perfringens ATCC 13124 hypothetical protein YP_694915.1 544136 D 195103 CDS YP_694916.1 110799947 4203787 544990..545694 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 545694 4203787 CPF_0459 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_694916.1 544990 D 195103 CDS YP_694917.1 110798921 4200985 545669..547900 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 547900 4200985 CPF_0460 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_694917.1 545669 D 195103 CDS YP_694918.1 110801208 4203129 complement(548090..548392) 1 NC_008261.1 hypothetical protein 548392 4203129 CPF_0461 Clostridium perfringens ATCC 13124 hypothetical protein YP_694918.1 548090 R 195103 CDS YP_694919.1 110800025 4203946 548818..549855 1 NC_008261.1 hypothetical protein 549855 4203946 CPF_0462 Clostridium perfringens ATCC 13124 hypothetical protein YP_694919.1 548818 D 195103 CDS YP_694920.1 110799388 4203263 550623..551036 1 NC_008261.1 identified by similarity to GB:BAB80172.1; hypothetical protein 551036 4203263 CPF_0463 Clostridium perfringens ATCC 13124 hypothetical protein YP_694920.1 550623 D 195103 CDS YP_694921.1 110799894 4203910 551513..552211 1 NC_008261.1 identified by match to protein family HMM PF02706; capsule chain length determinant protein 552211 4203910 CPF_0464 Clostridium perfringens ATCC 13124 capsule chain length determinant protein YP_694921.1 551513 D 195103 CDS YP_694922.1 110799248 4202072 552224..552877 1 NC_008261.1 capsular polysaccharide biosynthesis protein 552877 4202072 CPF_0465 Clostridium perfringens ATCC 13124 capsular polysaccharide biosynthesis protein YP_694922.1 552224 D 195103 CDS YP_694923.1 110801035 4201947 553078..553746 1 NC_008261.1 identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis protein 553746 4201947 CPF_0466 Clostridium perfringens ATCC 13124 capsular polysaccharide biosynthesis protein YP_694923.1 553078 D 195103 CDS YP_694924.1 110799320 4203156 554774..556003 1 NC_008261.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase 556003 4203156 CPF_0468 Clostridium perfringens ATCC 13124 UDP-glucose/GDP-mannose dehydrogenase YP_694924.1 554774 D 195103 CDS YP_694925.1 110799432 4202547 557181..557780 1 NC_008261.1 hexapeptide repeat-containing transferase 557780 4202547 CPF_0470 Clostridium perfringens ATCC 13124 hexapeptide repeat-containing transferase YP_694925.1 557181 D 195103 CDS YP_694926.1 110801402 4203483 557796..559688 1 NC_008261.1 identified by similarity to GB:BAC93122.1; match to protein family HMM PF07940; heparinase II/III-like protein 559688 4203483 CPF_0471 Clostridium perfringens ATCC 13124 heparinase II/III-like protein YP_694926.1 557796 D 195103 CDS YP_694927.1 110801005 4201350 559699..561078 1 NC_008261.1 identified by similarity to SP:P39860; capK protein 561078 4201350 CPF_0472 Clostridium perfringens ATCC 13124 capK protein YP_694927.1 559699 D 195103 CDS YP_694928.1 110800200 4202977 561106..562176 1 NC_008261.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 562176 4202977 CPF_0473 Clostridium perfringens ATCC 13124 group 1 glycosyl transferase YP_694928.1 561106 D 195103 CDS YP_694929.1 110798949 4202180 562178..563644 1 NC_008261.1 identified by match to protein family HMM PF01943; polysaccharide transporter protein 563644 4202180 CPF_0474 Clostridium perfringens ATCC 13124 polysaccharide transporter protein YP_694929.1 562178 D 195103 CDS YP_694930.1 110800565 4201436 563631..564848 1 NC_008261.1 hypothetical protein 564848 4201436 CPF_0475 Clostridium perfringens ATCC 13124 hypothetical protein YP_694930.1 563631 D 195103 CDS YP_694931.1 110800798 4202234 564848..565999 1 NC_008261.1 hypothetical protein 565999 4202234 CPF_0476 Clostridium perfringens ATCC 13124 hypothetical protein YP_694931.1 564848 D 195103 CDS YP_694932.1 110798592 4201237 566079..567206 1 NC_008261.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 567206 4201237 CPF_0477 Clostridium perfringens ATCC 13124 group 1 glycosyl transferase YP_694932.1 566079 D 195103 CDS YP_694933.1 110799188 4202380 567223..568551 1 NC_008261.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 568551 4202380 CPF_0478 Clostridium perfringens ATCC 13124 group 1 glycosyl transferase YP_694933.1 567223 D 195103 CDS YP_694934.1 110799823 4203701 568563..569444 1 NC_008261.1 identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 569444 rfbA 4203701 rfbA Clostridium perfringens ATCC 13124 glucose-1-phosphate thymidylyltransferase YP_694934.1 568563 D 195103 CDS YP_694935.1 110800202 4202979 569550..570119 1 NC_008261.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 570119 rfbC 4202979 rfbC Clostridium perfringens ATCC 13124 dTDP-4-dehydrorhamnose 3,5-epimerase YP_694935.1 569550 D 195103 CDS YP_694936.1 110801012 4201357 570133..571017 1 NC_008261.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 571017 rfbD 4201357 rfbD Clostridium perfringens ATCC 13124 dTDP-4-dehydrorhamnose reductase YP_694936.1 570133 D 195103 CDS YP_694937.1 110799263 4202087 571045..572094 1 NC_008261.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 572094 rfbB 4202087 rfbB Clostridium perfringens ATCC 13124 dTDP-glucose 4,6-dehydratase YP_694937.1 571045 D 195103 CDS YP_694938.1 110799732 4203163 572270..573190 1 NC_008261.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 573190 galU 4203163 galU Clostridium perfringens ATCC 13124 UTP-glucose-1-phosphate uridylyltransferase YP_694938.1 572270 D 195103 CDS YP_694939.1 110800600 4203574 573555..574202 1 NC_008261.1 identified by similarity to SP:P17869; match to protein family HMM TIGR02937; RNA polymerase sigma factor 574202 4203574 CPF_0484 Clostridium perfringens ATCC 13124 RNA polymerase sigma factor YP_694939.1 573555 D 195103 CDS YP_694940.1 110801203 4203124 574617..576845 1 NC_008261.1 hypothetical protein 576845 4203124 CPF_0485 Clostridium perfringens ATCC 13124 hypothetical protein YP_694940.1 574617 D 195103 CDS YP_694941.1 110800308 4202150 576923..577939 1 NC_008261.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 577939 galE 4202150 galE Clostridium perfringens ATCC 13124 UDP-glucose 4-epimerase YP_694941.1 576923 D 195103 CDS YP_694942.1 110799362 4203627 578221..579165 1 NC_008261.1 identified by similarity to SP:Q05852; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 579165 galU 4203627 galU Clostridium perfringens ATCC 13124 UTP-glucose-1-phosphate uridylyltransferase YP_694942.1 578221 D 195103 CDS YP_694943.1 110798662 4202710 579492..580121 1 NC_008261.1 hypothetical protein 580121 4202710 CPF_0488 Clostridium perfringens ATCC 13124 hypothetical protein YP_694943.1 579492 D 195103 CDS YP_694944.1 110799889 4203905 580766..585439 1 NC_008261.1 identified by match to protein family HMM PF01473; cell wall binding repeat-containing protein 585439 4203905 CPF_0490 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein YP_694944.1 580766 D 195103 CDS YP_694945.1 110798960 4201373 585866..588070 1 NC_008261.1 identified by similarity to GB:AAD23585.1; match to protein family HMM PF02065; alpha-galactosidase 588070 4201373 CPF_0491 Clostridium perfringens ATCC 13124 alpha-galactosidase YP_694945.1 585866 D 195103 CDS YP_694946.1 110801215 4203136 complement(588204..588953) 1 NC_008261.1 identified by match to protein family HMM PF07170; sortase 588953 4203136 CPF_0492 Clostridium perfringens ATCC 13124 sortase YP_694946.1 588204 R 195103 CDS YP_694947.1 110800919 4203601 589192..589716 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228; signal peptidase I 589716 sipW 4203601 sipW Clostridium perfringens ATCC 13124 signal peptidase I YP_694947.1 589192 D 195103 CDS YP_694948.1 110800677 4202520 589770..590405 1 NC_008261.1 hypothetical protein 590405 4202520 CPF_0494 Clostridium perfringens ATCC 13124 hypothetical protein YP_694948.1 589770 D 195103 CDS YP_694949.1 110799238 4201807 590453..591151 1 NC_008261.1 identified by similarity to GB:BAC14481.1; match to protein family HMM TIGR01167; hypothetical protein 591151 4201807 CPF_0495 Clostridium perfringens ATCC 13124 hypothetical protein YP_694949.1 590453 D 195103 CDS YP_694950.1 110799493 4202337 591175..591882 1 NC_008261.1 identified by similarity to GB:BAB80221.1; hypothetical protein 591882 4202337 CPF_0496 Clostridium perfringens ATCC 13124 hypothetical protein YP_694950.1 591175 D 195103 CDS YP_694951.1 110798896 4202127 591902..593644 1 NC_008261.1 identified by match to protein family HMM PF00092; von Willebrand factor A 593644 4202127 CPF_0497 Clostridium perfringens ATCC 13124 von Willebrand factor A YP_694951.1 591902 D 195103 CDS YP_694952.1 110798908 4202139 593925..594641 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 594641 4202139 CPF_0498 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_694952.1 593925 D 195103 CDS YP_694953.1 110800753 4201605 594646..595941 1 NC_008261.1 identified by match to protein family HMM PF02518; sensor histidine kinase 595941 4201605 CPF_0499 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_694953.1 594646 D 195103 CDS YP_694954.1 110799886 4203902 596119..596925 1 NC_008261.1 hypothetical protein 596925 4203902 CPF_0500 Clostridium perfringens ATCC 13124 hypothetical protein YP_694954.1 596119 D 195103 CDS YP_694955.1 110800206 4202983 597293..597736 1 NC_008261.1 identified by match to protein family HMM PF00359; PTS system L-ascorbate family IIA subunit 597736 4202983 CPF_0501 Clostridium perfringens ATCC 13124 PTS system L-ascorbate family IIA subunit YP_694955.1 597293 D 195103 CDS YP_694956.1 110799468 4201338 597914..598186 1 NC_008261.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 598186 4201338 CPF_0502 Clostridium perfringens ATCC 13124 PTS system lactose/cellobiose-specific transporter subunit IIB YP_694956.1 597914 D 195103 CDS YP_694957.1 110800122 4203889 598227..599498 1 NC_008261.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 599498 ulaA 4203889 ulaA Clostridium perfringens ATCC 13124 PTS system ascorbate-specific transporter subunit IIC YP_694957.1 598227 D 195103 CDS YP_694958.1 110800774 4201760 599856..600650 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 600650 4201760 CPF_0504 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_694958.1 599856 D 195103 CDS YP_694959.1 110799252 4202076 complement(600784..601230) 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 601230 4202076 CPF_0505 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_694959.1 600784 R 195103 CDS YP_694960.1 110799744 4203175 601555..603852 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 603852 4203175 CPF_0506 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694960.1 601555 D 195103 CDS YP_694961.1 110800402 4202031 603845..605701 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 605701 4202031 CPF_0507 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_694961.1 603845 D 195103 CDS YP_694962.1 110801214 4203135 606198..607079 1 NC_008261.1 hypothetical protein 607079 4203135 CPF_0508 Clostridium perfringens ATCC 13124 hypothetical protein YP_694962.1 606198 D 195103 CDS YP_694963.1 110799143 4200974 607334..608383 1 NC_008261.1 identified by match to protein family HMM PF03547; auxin efflux carrier family protein 608383 4200974 CPF_0509 Clostridium perfringens ATCC 13124 auxin efflux carrier family protein YP_694963.1 607334 D 195103 CDS YP_694964.1 110801092 4202861 608710..609708 1 NC_008261.1 identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 609708 4202861 CPF_0510 Clostridium perfringens ATCC 13124 D-lactate dehydrogenase YP_694964.1 608710 D 195103 CDS YP_694965.1 110801291 4201598 610004..611554 1 NC_008261.1 identified by match to protein family HMM PF02518; sensor histidine kinase 611554 4201598 CPF_0511 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_694965.1 610004 D 195103 CDS YP_694966.1 110798719 4201325 611554..612222 1 NC_008261.1 identified by match to protein family HMM PF00072; two-component response regulator 612222 4201325 CPF_0512 Clostridium perfringens ATCC 13124 two-component response regulator YP_694966.1 611554 D 195103 CDS YP_694967.1 110799651 4202575 612303..612482 1 NC_008261.1 hypothetical protein 612482 4202575 CPF_0513 Clostridium perfringens ATCC 13124 hypothetical protein YP_694967.1 612303 D 195103 CDS YP_694968.1 110800714 4202461 612640..613170 1 NC_008261.1 lipoprotein 613170 4202461 CPF_0514 Clostridium perfringens ATCC 13124 lipoprotein YP_694968.1 612640 D 195103 CDS YP_694969.1 110800951 4203340 613635..613775 1 NC_008261.1 hypothetical protein 613775 4203340 CPF_0515 Clostridium perfringens ATCC 13124 hypothetical protein YP_694969.1 613635 D 195103 CDS YP_694970.1 110801123 4201624 614301..614942 1 NC_008261.1 identified by match to protein family HMM PF02659; hypothetical protein 614942 4201624 CPF_0516 Clostridium perfringens ATCC 13124 hypothetical protein YP_694970.1 614301 D 195103 CDS YP_694971.1 110799363 4203628 615154..615567 1 NC_008261.1 hypothetical protein 615567 4203628 CPF_0517 Clostridium perfringens ATCC 13124 hypothetical protein YP_694971.1 615154 D 195103 CDS YP_694972.1 110800333 4202097 615878..616993 1 NC_008261.1 identified by match to protein family HMM PF00465; NAD-dependent 4-hydroxybutyrate dehydrogenase 616993 4202097 CPF_0518 Clostridium perfringens ATCC 13124 NAD-dependent 4-hydroxybutyrate dehydrogenase YP_694972.1 615878 D 195103 CDS YP_694973.1 110800483 4201957 617002..617190 1 NC_008261.1 hypothetical protein 617190 4201957 CPF_0519 Clostridium perfringens ATCC 13124 hypothetical protein YP_694973.1 617002 D 195103 CDS YP_694974.1 110800181 4203675 617226..617906 1 NC_008261.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 617906 4203675 CPF_0520 Clostridium perfringens ATCC 13124 TrkA domain-containing protein YP_694974.1 617226 D 195103 CDS YP_694975.1 110799246 4202070 complement(618021..618473) 1 NC_008261.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 618473 4202070 CPF_0521 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_694975.1 618021 R 195103 CDS YP_694976.1 110798580 4202726 618727..619860 1 NC_008261.1 identified by match to protein family HMM PF01594; hypothetical protein 619860 4202726 CPF_0522 Clostridium perfringens ATCC 13124 hypothetical protein YP_694976.1 618727 D 195103 CDS YP_694977.1 110801311 4201912 620264..621655 1 NC_008261.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 621655 4201912 CPF_0523 Clostridium perfringens ATCC 13124 amino acid/peptide transporter YP_694977.1 620264 D 195103 CDS YP_694978.1 110798757 4200958 complement(621817..622032) 1 NC_008261.1 hypothetical protein 622032 4200958 CPF_0524 Clostridium perfringens ATCC 13124 hypothetical protein YP_694978.1 621817 R 195103 CDS YP_694979.1 110799510 4202063 complement(622046..622285) 1 NC_008261.1 identified by similarity to GB:AAY61763.1; hypothetical protein 622285 4202063 CPF_0525 Clostridium perfringens ATCC 13124 hypothetical protein YP_694979.1 622046 R 195103 CDS YP_694980.1 110800027 4203948 622525..624075 1 NC_008261.1 identified by similarity to GB:BAA06530.1; match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase-like protein 624075 4203948 CPF_0526 Clostridium perfringens ATCC 13124 nitrite/sulfite reductase-like protein YP_694980.1 622525 D 195103 CDS YP_694981.1 110800832 4203924 624388..625203 1 NC_008261.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 625203 speD 4203924 speD Clostridium perfringens ATCC 13124 S-adenosylmethionine decarboxylase YP_694981.1 624388 D 195103 CDS YP_694982.1 110798825 4202484 625221..626675 1 NC_008261.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 626675 4202484 CPF_0528 Clostridium perfringens ATCC 13124 Orn/Lys/Arg decarboxylase YP_694982.1 625221 D 195103 CDS YP_694983.1 110799842 4203740 626690..627541 1 NC_008261.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 627541 speE 4203740 speE Clostridium perfringens ATCC 13124 spermidine synthase YP_694983.1 626690 D 195103 CDS YP_694984.1 110798973 4201386 627528..628385 1 NC_008261.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 628385 speB 4201386 speB Clostridium perfringens ATCC 13124 agmatinase YP_694984.1 627528 D 195103 CDS YP_694985.1 110801159 4201019 complement(628699..628962) 1 NC_008261.1 identified by similarity to GB:BAB80258.1; match to protein family HMM PF06961; hypothetical protein 628962 4201019 CPF_0531 Clostridium perfringens ATCC 13124 hypothetical protein YP_694985.1 628699 R 195103 CDS YP_694986.1 110800613 4202243 629171..632692 1 NC_008261.1 identified by similarity to SP:P29767; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF02012; match to protein family HMM PF02973; exo-alpha-sialidase 632692 4202243 CPF_0532 Clostridium perfringens ATCC 13124 exo-alpha-sialidase YP_694986.1 629171 D 195103 CDS YP_694987.1 110800273 4203613 632838..633479 1 NC_008261.1 identified by similarity to GB:AAM32797.1; hypothetical protein 633479 4203613 CPF_0533 Clostridium perfringens ATCC 13124 hypothetical protein YP_694987.1 632838 D 195103 CDS YP_694988.1 110799828 4203726 complement(633592..636261) 1 NC_008261.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 636261 4203726 CPF_0534 Clostridium perfringens ATCC 13124 copper-translocating P-type ATPase YP_694988.1 633592 R 195103 CDS YP_694989.1 110800937 4202120 636553..637209 1 NC_008261.1 identified by match to protein family HMM PF02525; flavodoxin family protein 637209 4202120 CPF_0535 Clostridium perfringens ATCC 13124 flavodoxin family protein YP_694989.1 636553 D 195103 CDS YP_694990.1 110800377 4201986 638161..638265 1 NC_008261.1 hypothetical protein 638265 4201986 CPF_0536 Clostridium perfringens ATCC 13124 hypothetical protein YP_694990.1 638161 D 195103 CDS YP_694991.1 110801237 4203314 638514..639650 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline transport, ATP-binding protein 639650 4203314 CPF_0537 Clostridium perfringens ATCC 13124 glycine betaine/L-proline transport, ATP-binding protein YP_694991.1 638514 D 195103 CDS YP_694992.1 110800299 4202883 639643..641196 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein 641196 4202883 CPF_0538 Clostridium perfringens ATCC 13124 glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein YP_694992.1 639643 D 195103 CDS YP_694993.1 110799570 4203505 641467..642030 1 NC_008261.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954; RNA polymerase sigma-70 factor 642030 4203505 CPF_0539 Clostridium perfringens ATCC 13124 RNA polymerase sigma-70 factor YP_694993.1 641467 D 195103 CDS YP_694994.1 110799181 4202921 642023..643114 1 NC_008261.1 identified by similarity to GB:AAO35222.1; hypothetical protein 643114 4202921 CPF_0540 Clostridium perfringens ATCC 13124 hypothetical protein YP_694994.1 642023 D 195103 CDS YP_694995.1 110800828 4203920 643462..644883 1 NC_008261.1 identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 644883 treB 4203920 treB Clostridium perfringens ATCC 13124 PTS system, trehalose-specific IIBC component YP_694995.1 643462 D 195103 CDS YP_694996.2 261876150 4202044 645087..646754 1 NC_008261.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 646754 treC 4202044 treC Clostridium perfringens ATCC 13124 alpha,alpha-phosphotrehalase YP_694996.2 645087 D 195103 CDS YP_694997.1 110799925 4201449 647019..647726 1 NC_008261.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 647726 treR 4201449 treR Clostridium perfringens ATCC 13124 trehalose operon repressor YP_694997.1 647019 D 195103 CDS YP_694998.1 110800679 4202522 complement(648176..650341) 1 NC_008261.1 identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 650341 spoVD 4202522 spoVD Clostridium perfringens ATCC 13124 stage V sporulation protein D YP_694998.1 648176 R 195103 CDS YP_694999.1 110800561 4201432 650904..651377 1 NC_008261.1 identified by similarity to SP:P00806; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 651377 4201432 CPF_0545 Clostridium perfringens ATCC 13124 N-acetylmuramoyl-L-alanine amidase YP_694999.1 650904 D 195103 CDS YP_695000.2 261876153 4202761 651933..653048 1 NC_008261.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 653048 ribD 4202761 ribD Clostridium perfringens ATCC 13124 riboflavin biosynthesis protein RibD YP_695000.2 651933 D 195103 CDS YP_695001.1 110799364 4203629 653070..653723 1 NC_008261.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 653723 ribE 4203629 ribE Clostridium perfringens ATCC 13124 riboflavin synthase subunit alpha YP_695001.1 653070 D 195103 CDS YP_695002.1 110798726 4202423 653875..655074 1 NC_008261.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 655074 ribA 4202423 ribA Clostridium perfringens ATCC 13124 riboflavin biosynthesis protein RibA YP_695002.1 653875 D 195103 CDS YP_695003.1 110799137 4200968 655201..655662 1 NC_008261.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 655662 ribH 4200968 ribH Clostridium perfringens ATCC 13124 6,7-dimethyl-8-ribityllumazine synthase YP_695003.1 655201 D 195103 CDS YP_695004.1 110800410 4202039 complement(655789..656781) 1 NC_008261.1 identified by match to protein family HMM PF01473; cell wall binding repeat-containing protein 656781 4202039 CPF_0550 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein YP_695004.1 655789 R 195103 CDS YP_695005.1 110799973 4203755 complement(656885..657292) 1 NC_008261.1 identified by similarity to GB:BAD76119.1; match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 657292 4203755 CPF_0551 Clostridium perfringens ATCC 13124 hypothetical protein YP_695005.1 656885 R 195103 CDS YP_695006.1 110799099 4202819 657691..657939 1 NC_008261.1 identified by similarity to PIR:F72407; hypothetical protein 657939 4202819 CPF_0552 Clostridium perfringens ATCC 13124 hypothetical protein YP_695006.1 657691 D 195103 CDS YP_695007.1 110799877 4202999 658230..660434 1 NC_008261.1 identified by similarity to GB:AAN25428.1; match to protein family HMM TIGR02336; hypothetical protein 660434 4202999 CPF_0553 Clostridium perfringens ATCC 13124 hypothetical protein YP_695007.1 658230 D 195103 CDS YP_695008.1 110800843 4203935 660619..662370 1 NC_008261.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 662370 4203935 CPF_0554 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695008.1 660619 D 195103 CDS YP_695009.1 110799418 4201172 662383..663972 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 663972 4201172 CPF_0555 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695009.1 662383 D 195103 CDS YP_695010.1 110800185 4203679 664125..665510 1 NC_008261.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 665510 4203679 CPF_0556 Clostridium perfringens ATCC 13124 ABC transporter substrate-binding protein YP_695010.1 664125 D 195103 CDS YP_695011.1 110801006 4201351 665589..666515 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 666515 4201351 CPF_0557 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695011.1 665589 D 195103 CDS YP_695012.1 110801129 4201630 666517..667398 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 667398 4201630 CPF_0558 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695012.1 666517 D 195103 CDS YP_695013.2 261876145 4203016 667634..668329 1 NC_008261.1 DedA family protein 668329 4203016 CPF_0559 Clostridium perfringens ATCC 13124 DedA family protein YP_695013.2 667634 D 195103 CDS YP_695014.1 110799792 4202658 668319..669431 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; (Fe-S)-binding protein 669431 4202658 CPF_0560 Clostridium perfringens ATCC 13124 (Fe-S)-binding protein YP_695014.1 668319 D 195103 CDS YP_695015.1 110800447 4202367 669595..670182 1 NC_008261.1 identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase 670182 4202367 CPF_0561 Clostridium perfringens ATCC 13124 CDP-alcohol phosphatidyltransferase YP_695015.1 669595 D 195103 CDS YP_695016.1 110798904 4202135 670467..671099 1 NC_008261.1 identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865; hypothetical protein 671099 4202135 CPF_0562 Clostridium perfringens ATCC 13124 hypothetical protein YP_695016.1 670467 D 195103 CDS YP_695017.1 110799527 4203189 671092..672090 1 NC_008261.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 672090 4203189 CPF_0563 Clostridium perfringens ATCC 13124 phosphate transporter family protein YP_695017.1 671092 D 195103 CDS YP_695018.1 110800297 4202881 complement(672372..674264) 1 NC_008261.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system fructose-specific transporter subunit IIABC 674264 fruA 4202881 fruA Clostridium perfringens ATCC 13124 PTS system fructose-specific transporter subunit IIABC YP_695018.1 672372 R 195103 CDS YP_695019.1 110800742 4201419 complement(674268..675188) 1 NC_008261.1 identified by similarity to SP:O31714; match to protein family HMM PF00294; 1-phosphofructokinase 675188 fruK 4201419 fruK Clostridium perfringens ATCC 13124 1-phosphofructokinase YP_695019.1 674268 R 195103 CDS YP_695020.1 110799175 4202915 complement(675188..675934) 1 NC_008261.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 675934 4202915 CPF_0566 Clostridium perfringens ATCC 13124 DeoR family transcriptional regulator YP_695020.1 675188 R 195103 CDS YP_695021.1 110799980 4201250 676225..676677 1 NC_008261.1 hypothetical protein 676677 4201250 CPF_0567 Clostridium perfringens ATCC 13124 hypothetical protein YP_695021.1 676225 D 195103 CDS YP_695022.1 110800682 4202525 complement(676728..677828) 1 NC_008261.1 identified by match to protein family HMM PF01594; hypothetical protein 677828 4202525 CPF_0568 Clostridium perfringens ATCC 13124 hypothetical protein YP_695022.1 676728 R 195103 CDS YP_695023.1 110801252 4203329 678125..678745 1 NC_008261.1 identified by match to protein family HMM PF00857; isochorismatase 678745 4203329 CPF_0569 Clostridium perfringens ATCC 13124 isochorismatase YP_695023.1 678125 D 195103 CDS YP_695024.1 110800437 4203817 679123..680436 1 NC_008261.1 identified by match to protein family HMM PF00654; voltage-gated chloride channel family protein 680436 4203817 CPF_0570 Clostridium perfringens ATCC 13124 voltage-gated chloride channel family protein YP_695024.1 679123 D 195103 CDS YP_695025.1 110798927 4200991 680740..681663 1 NC_008261.1 identified by match to protein family HMM PF04960; glutaminase 681663 4200991 CPF_0571 Clostridium perfringens ATCC 13124 glutaminase YP_695025.1 680740 D 195103 CDS YP_695026.1 110799942 4203782 681964..682686 1 NC_008261.1 identified by match to protein family HMM PF02308; MgtC family protein 682686 4203782 CPF_0572 Clostridium perfringens ATCC 13124 MgtC family protein YP_695026.1 681964 D 195103 CDS YP_695027.1 110799174 4202914 688429..689121 1 NC_008261.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 689121 sfsA 4202914 sfsA Clostridium perfringens ATCC 13124 sugar fermentation stimulation protein A YP_695027.1 688429 D 195103 CDS YP_695028.1 110800309 4202151 689535..690074 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 690074 4202151 CPF_0575 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695028.1 689535 D 195103 CDS YP_695029.1 110800409 4202038 690485..691780 1 NC_008261.1 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 691780 lysA 4202038 lysA Clostridium perfringens ATCC 13124 diaminopimelate decarboxylase YP_695029.1 690485 D 195103 CDS YP_695030.1 110798634 4201687 692189..692455 1 NC_008261.1 hypothetical protein 692455 4201687 CPF_0577 Clostridium perfringens ATCC 13124 hypothetical protein YP_695030.1 692189 D 195103 CDS YP_695031.1 110799433 4202548 692458..692988 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 692988 4202548 CPF_0578 Clostridium perfringens ATCC 13124 signal peptidase I YP_695031.1 692458 D 195103 CDS YP_695032.1 110800032 4203953 693013..695166 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 695166 ftsH 4203953 ftsH Clostridium perfringens ATCC 13124 ATP-dependent metalloprotease FtsH YP_695032.1 693013 D 195103 CDS YP_695033.1 110798811 4201787 695386..697506 1 NC_008261.1 identified by similarity to GB:BAA23380.1; helicase 697506 4201787 CPF_0580 Clostridium perfringens ATCC 13124 helicase YP_695033.1 695386 D 195103 CDS YP_695034.1 110800184 4203678 697962..698798 1 NC_008261.1 identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 698798 4203678 CPF_0581 Clostridium perfringens ATCC 13124 amino acid ABC transporter substrate-binding protein YP_695034.1 697962 D 195103 CDS YP_695035.1 110800463 4201546 698829..699500 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 699500 4201546 CPF_0582 Clostridium perfringens ATCC 13124 His/Glu/Gln/Arg/opine ABC transporter permease YP_695035.1 698829 D 195103 CDS YP_695036.1 110799193 4202385 699497..700219 1 NC_008261.1 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 700219 4202385 CPF_0583 Clostridium perfringens ATCC 13124 amino acid ABC transporter ATP-binding protein YP_695036.1 699497 D 195103 CDS YP_695037.1 110800700 4203829 700437..702245 1 NC_008261.1 identified by match to protein family HMM PF00884; sulfatase 702245 4203829 CPF_0584 Clostridium perfringens ATCC 13124 sulfatase YP_695037.1 700437 D 195103 CDS YP_695038.1 110799872 4202994 702497..704341 1 NC_008261.1 identified by match to protein family HMM PF00884; sulfatase 704341 4202994 CPF_0585 Clostridium perfringens ATCC 13124 sulfatase YP_695038.1 702497 D 195103 CDS YP_695039.1 110798685 4202207 complement(704443..705624) 1 NC_008261.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 705624 4202207 CPF_0586 Clostridium perfringens ATCC 13124 cation efflux family protein YP_695039.1 704443 R 195103 CDS YP_695040.1 110800117 4203884 705867..707528 1 NC_008261.1 identified by match to protein family HMM PF00018; match to protein family HMM PF01510; match to protein family HMM PF06347; match to protein family HMM PF07653; N-acetylmuramoyl-L-alanine amidase 707528 4203884 CPF_0587 Clostridium perfringens ATCC 13124 N-acetylmuramoyl-L-alanine amidase YP_695040.1 705867 D 195103 CDS YP_695041.1 110801048 4202600 707670..708965 1 NC_008261.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 708965 4202600 CPF_0588 Clostridium perfringens ATCC 13124 aminopeptidase 2 YP_695041.1 707670 D 195103 CDS YP_695042.1 110798804 4201780 complement(709058..709252) 1 NC_008261.1 identified by similarity to PIR:E96976; hypothetical protein 709252 4201780 CPF_0589 Clostridium perfringens ATCC 13124 hypothetical protein YP_695042.1 709058 R 195103 CDS YP_695043.1 110799052 4202555 709644..710483 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 710483 4202555 CPF_0590 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695043.1 709644 D 195103 CDS YP_695044.1 110800550 4202902 complement(710691..714020) 1 NC_008261.1 identified by match to protein family HMM PF03176; MmpL family membrane protein 714020 4202902 CPF_0591 Clostridium perfringens ATCC 13124 MmpL family membrane protein YP_695044.1 710691 R 195103 CDS YP_695045.1 110801192 4203113 complement(714281..715876) 1 NC_008261.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 715876 prfC 4203113 prfC Clostridium perfringens ATCC 13124 peptide chain release factor 3 YP_695045.1 714281 R 195103 CDS YP_695046.1 110799228 4201797 complement(716090..716695) 1 NC_008261.1 hypothetical protein 716695 4201797 CPF_0593 Clostridium perfringens ATCC 13124 hypothetical protein YP_695046.1 716090 R 195103 CDS YP_695047.1 110799300 4202630 717071..717871 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 717871 4202630 CPF_0594 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695047.1 717071 D 195103 CDS YP_695048.1 110800809 4201079 717912..718574 1 NC_008261.1 identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397; sugar transferase 718574 4201079 CPF_0595 Clostridium perfringens ATCC 13124 sugar transferase YP_695048.1 717912 D 195103 CDS YP_695049.1 110800398 4201830 718575..719489 1 NC_008261.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 719489 4201830 CPF_0596 Clostridium perfringens ATCC 13124 glycosyl transferase family protein YP_695049.1 718575 D 195103 CDS YP_695050.1 110800050 4203718 719512..720393 1 NC_008261.1 identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 720393 rfbA 4203718 rfbA Clostridium perfringens ATCC 13124 glucose-1-phosphate thymidylyltransferase YP_695050.1 719512 D 195103 CDS YP_695051.1 110799633 4202498 720499..721068 1 NC_008261.1 identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 721068 rfbC 4202498 rfbC Clostridium perfringens ATCC 13124 dTDP-4-dehydrorhamnose 3,5-epimerase YP_695051.1 720499 D 195103 CDS YP_695052.1 110800859 4201281 721082..721966 1 NC_008261.1 identified by similarity to GB:BAA21509.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 721966 rfbD 4201281 rfbD Clostridium perfringens ATCC 13124 dTDP-4-dehydrorhamnose reductase YP_695052.1 721082 D 195103 CDS YP_695053.1 110800083 4202447 721994..723043 1 NC_008261.1 identified by similarity to SP:P55295; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 723043 rfbB 4202447 rfbB Clostridium perfringens ATCC 13124 dTDP-glucose 4,6-dehydratase YP_695053.1 721994 D 195103 CDS YP_695054.1 110799952 4203792 723068..724282 1 NC_008261.1 hypothetical protein 724282 4203792 CPF_0601 Clostridium perfringens ATCC 13124 hypothetical protein YP_695054.1 723068 D 195103 CDS YP_695055.1 110799149 4202830 724279..725127 1 NC_008261.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 725127 4202830 CPF_0602 Clostridium perfringens ATCC 13124 glycosyl transferase family protein YP_695055.1 724279 D 195103 CDS YP_695056.1 110800674 4202517 725221..725961 1 NC_008261.1 identified by similarity to GB:BAA32000.1; hypothetical protein 725961 4202517 CPF_0603 Clostridium perfringens ATCC 13124 hypothetical protein YP_695056.1 725221 D 195103 CDS YP_695057.1 110799834 4203732 725970..727421 1 NC_008261.1 identified by similarity to GB:AAK68914.1; match to protein family HMM PF01943; polysaccharide biosynthesis protein 727421 4203732 CPF_0604 Clostridium perfringens ATCC 13124 polysaccharide biosynthesis protein YP_695057.1 725970 D 195103 CDS YP_695058.1 110799389 4203264 727443..729866 1 NC_008261.1 identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832; cell wall binding repeat-containing protein/mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 729866 4203264 CPF_0605 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein/mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein YP_695058.1 727443 D 195103 CDS YP_695059.1 110800016 4203859 729995..731647 1 NC_008261.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01473; cell wall binding repeat-containing protein/zinc carboxypeptidase 731647 4203859 CPF_0606 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein/zinc carboxypeptidase YP_695059.1 729995 D 195103 CDS YP_695060.1 110801280 4201587 731849..733213 1 NC_008261.1 identified by similarity to PIR:A41971; match to protein family HMM PF01473; cell wall binding repeat-containing protein 733213 4201587 CPF_0607 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein YP_695060.1 731849 D 195103 CDS YP_695061.1 110798829 4202488 733418..735286 1 NC_008261.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636; MarR family transcriptional regulator 735286 4202488 CPF_0608 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695061.1 733418 D 195103 CDS YP_695062.1 110799835 4203733 735312..736280 1 NC_008261.1 identified by match to protein family HMM PF00892; hypothetical protein 736280 4203733 CPF_0609 Clostridium perfringens ATCC 13124 hypothetical protein YP_695062.1 735312 D 195103 CDS YP_695063.1 110800650 4202008 736427..737110 1 NC_008261.1 identified by match to protein family HMM PF00483; nucleotidyl transferase 737110 4202008 CPF_0610 Clostridium perfringens ATCC 13124 nucleotidyl transferase YP_695063.1 736427 D 195103 CDS YP_695064.1 110798675 4202314 complement(737229..738521) 1 NC_008261.1 identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; cell wall binding repeat-containing protein 738521 4202314 CPF_0611 Clostridium perfringens ATCC 13124 cell wall binding repeat-containing protein YP_695064.1 737229 R 195103 CDS YP_695065.1 110799466 4201336 complement(738640..739659) 1 NC_008261.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 739659 4201336 CPF_0612 Clostridium perfringens ATCC 13124 transcriptional regulator YP_695065.1 738640 R 195103 CDS YP_695066.1 110800743 4201420 complement(739939..741213) 1 NC_008261.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 741213 brnQ 4201420 brnQ Clostridium perfringens ATCC 13124 branched-chain amino acid transport system II carrier protein YP_695066.1 739939 R 195103 CDS YP_695067.1 110799150 4202831 741966..742964 1 NC_008261.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 742964 trpS 4202831 trpS Clostridium perfringens ATCC 13124 tryptophanyl-tRNA synthetase YP_695067.1 741966 D 195103 CDS YP_695068.1 110799656 4202580 743378..743917 1 NC_008261.1 hypothetical protein 743917 4202580 CPF_0615 Clostridium perfringens ATCC 13124 hypothetical protein YP_695068.1 743378 D 195103 CDS YP_695069.1 110800028 4203949 744000..745112 1 NC_008261.1 anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 745112 4203949 CPF_0616 Clostridium perfringens ATCC 13124 anaerobic sulfatase-maturase YP_695069.1 744000 D 195103 CDS YP_695070.1 110799796 4202662 745323..746153 1 NC_008261.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 746153 pstS 4202662 pstS Clostridium perfringens ATCC 13124 phosphate ABC transporter substrate-binding protein YP_695070.1 745323 D 195103 CDS YP_695071.1 110799563 4203498 746377..747195 1 NC_008261.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 747195 pstS 4203498 pstS Clostridium perfringens ATCC 13124 phosphate ABC transporter substrate-binding protein YP_695071.1 746377 D 195103 CDS YP_695072.1 110801423 4203019 747277..748164 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 748164 pstC 4203019 pstC Clostridium perfringens ATCC 13124 phosphate ABC transporter permease YP_695072.1 747277 D 195103 CDS YP_695073.1 110799373 4203638 748167..748991 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 748991 pstA 4203638 pstA Clostridium perfringens ATCC 13124 phosphate ABC transporter permease YP_695073.1 748167 D 195103 CDS YP_695074.1 110800558 4201428 749009..749770 1 NC_008261.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 749770 pstB 4201428 pstB Clostridium perfringens ATCC 13124 phosphate transporter ATP-binding protein YP_695074.1 749009 D 195103 CDS YP_695075.1 110800955 4203344 749795..750448 1 NC_008261.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 750448 phoU 4203344 phoU Clostridium perfringens ATCC 13124 phosphate transport system regulatory protein PhoU YP_695075.1 749795 D 195103 CDS YP_695076.1 110801119 4201620 750608..751303 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 751303 4201620 CPF_0623 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695076.1 750608 D 195103 CDS YP_695077.1 110800471 4201554 complement(751474..752097) 1 NC_008261.1 identified by similarity to PIR:C96972; hypothetical protein 752097 4201554 CPF_0624 Clostridium perfringens ATCC 13124 hypothetical protein YP_695077.1 751474 R 195103 CDS YP_695078.1 110801115 4203290 complement(752131..752547) 1 NC_008261.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 752547 4203290 CPF_0625 Clostridium perfringens ATCC 13124 flavodoxin YP_695078.1 752131 R 195103 CDS YP_695079.1 110801069 4201743 complement(752961..754619) 1 NC_008261.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 754619 glnS 4201743 glnS Clostridium perfringens ATCC 13124 glutaminyl-tRNA synthetase YP_695079.1 752961 R 195103 CDS YP_695080.1 110798680 4202319 complement(754873..755028) 1 NC_008261.1 identified by similarity to PIR:A96978; hypothetical protein 755028 4202319 CPF_0627 Clostridium perfringens ATCC 13124 hypothetical protein YP_695080.1 754873 R 195103 CDS YP_695081.1 110799282 4203078 complement(755183..756271) 1 NC_008261.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 756271 4203078 CPF_0628 Clostridium perfringens ATCC 13124 spore germination protein YP_695081.1 755183 R 195103 CDS YP_695082.1 110800635 4201993 756367..757788 1 NC_008261.1 identified by match to protein family HMM PF03323; spore germination protein 757788 4201993 CPF_0629 Clostridium perfringens ATCC 13124 spore germination protein YP_695082.1 756367 D 195103 CDS YP_695083.1 110801303 4201904 757763..758887 1 NC_008261.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; spore germination protein 758887 4201904 CPF_0630 Clostridium perfringens ATCC 13124 spore germination protein YP_695083.1 757763 D 195103 CDS YP_695084.1 110799092 4202812 759081..760214 1 NC_008261.1 identified by match to protein family HMM PF04326; ATPase central domain-containing protein 760214 4202812 CPF_0631 Clostridium perfringens ATCC 13124 ATPase central domain-containing protein YP_695084.1 759081 D 195103 CDS YP_695085.1 110801361 4203245 760290..760703 1 NC_008261.1 identified by similarity to PIR:D70143; hypothetical protein 760703 4203245 CPF_0632 Clostridium perfringens ATCC 13124 hypothetical protein YP_695085.1 760290 D 195103 CDS YP_695086.1 110800207 4202984 760987..762207 1 NC_008261.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 762207 tyrS 4202984 tyrS Clostridium perfringens ATCC 13124 tyrosyl-tRNA synthetase YP_695086.1 760987 D 195103 CDS YP_695087.1 110799734 4203165 762463..763155 1 NC_008261.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 763155 4203165 CPF_0634 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_695087.1 762463 D 195103 CDS YP_695088.1 110799255 4202079 763274..764065 1 NC_008261.1 identified by match to protein family HMM PF04607; relA/spoT family protein 764065 4202079 CPF_0635 Clostridium perfringens ATCC 13124 relA/spoT family protein YP_695088.1 763274 D 195103 CDS YP_695089.1 110801379 4203460 764375..765160 1 NC_008261.1 identified by similarity to GB:AAO35900.1; hypothetical protein 765160 4203460 CPF_0636 Clostridium perfringens ATCC 13124 hypothetical protein YP_695089.1 764375 D 195103 CDS YP_695090.1 110799434 4202549 765278..766393 1 NC_008261.1 identified by similarity to PIR:C97129; match to protein family HMM PF07728; hypothetical protein 766393 4202549 CPF_0637 Clostridium perfringens ATCC 13124 hypothetical protein YP_695090.1 765278 D 195103 CDS YP_695091.1 110798637 4201690 766407..767744 1 NC_008261.1 identified by similarity to GB:AAO35898.1; hypothetical protein 767744 4201690 CPF_0638 Clostridium perfringens ATCC 13124 hypothetical protein YP_695091.1 766407 D 195103 CDS YP_695092.1 110801057 4202609 767902..769293 1 NC_008261.1 hypothetical protein 769293 4202609 CPF_0639 Clostridium perfringens ATCC 13124 hypothetical protein YP_695092.1 767902 D 195103 CDS YP_695093.2 261876169 4202427 769616..771136 1 NC_008261.1 identified by similarity to SP:P44744; hypothetical protein 771136 4202427 CPF_0640 Clostridium perfringens ATCC 13124 hypothetical protein YP_695093.2 769616 D 195103 CDS YP_695094.1 110800952 4203341 771145..771966 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; 4Fe-4S ferredoxin 771966 4203341 CPF_0641 Clostridium perfringens ATCC 13124 4Fe-4S ferredoxin YP_695094.1 771145 D 195103 CDS YP_695095.1 110800332 4202096 complement(772148..772927) 1 NC_008261.1 identified by similarity to GB:AAO80924.1; match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 772927 4202096 CPF_0642 Clostridium perfringens ATCC 13124 DeoR family transcriptional regulator YP_695095.1 772148 R 195103 CDS YP_695096.1 110800572 4201443 773373..774437 1 NC_008261.1 identified by similarity to GB:AAL23202.1; L-ascorbate 6-phosphate lactonase 774437 4201443 CPF_0643 Clostridium perfringens ATCC 13124 L-ascorbate 6-phosphate lactonase YP_695096.1 773373 D 195103 CDS YP_695097.1 110801412 4203008 774462..774896 1 NC_008261.1 identified by match to protein family HMM PF00359; PTS system, ascorbate-specific IIA component SgaA 774896 4203008 CPF_0644 Clostridium perfringens ATCC 13124 PTS system, ascorbate-specific IIA component SgaA YP_695097.1 774462 D 195103 CDS YP_695098.1 110800559 4201429 775083..776549 1 NC_008261.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 776549 4201429 CPF_0645 Clostridium perfringens ATCC 13124 PTS system ascorbate-specific transporter subunit IIC YP_695098.1 775083 D 195103 CDS YP_695099.1 110799760 4203658 776646..776936 1 NC_008261.1 identified by similarity to SP:P39302; match to protein family HMM PF02302; PTS system, ascorbate-specific IIB component SgaB 776936 4203658 CPF_0646 Clostridium perfringens ATCC 13124 PTS system, ascorbate-specific IIB component SgaB YP_695099.1 776646 D 195103 CDS YP_695100.1 110799009 4201869 777044..778078 1 NC_008261.1 identified by similarity to GB:AAN00670.1; match to protein family HMM PF01839; hypothetical protein 778078 4201869 CPF_0647 Clostridium perfringens ATCC 13124 hypothetical protein YP_695100.1 777044 D 195103 CDS YP_695101.1 110800042 4203710 778217..778915 1 NC_008261.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 778915 araD 4203710 araD Clostridium perfringens ATCC 13124 L-ribulose-5-phosphate 4-epimerase YP_695101.1 778217 D 195103 CDS YP_695102.1 110799479 4202323 778934..779782 1 NC_008261.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 779782 4202323 CPF_0649 Clostridium perfringens ATCC 13124 L-xylulose 5-phosphate 3-epimerase YP_695102.1 778934 D 195103 CDS YP_695103.1 110799154 4202835 complement(779906..780706) 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 780706 4202835 CPF_0650 Clostridium perfringens ATCC 13124 hypothetical protein YP_695103.1 779906 R 195103 CDS YP_695104.1 110800761 4201613 complement(780813..780950) 1 NC_008261.1 hypothetical protein 780950 4201613 CPF_0651 Clostridium perfringens ATCC 13124 hypothetical protein YP_695104.1 780813 R 195103 CDS YP_695105.1 110799173 4202913 complement(781031..782341) 1 NC_008261.1 F5/8 type C domain-containing protein 782341 4202913 CPF_0652 Clostridium perfringens ATCC 13124 F5/8 type C domain-containing protein YP_695105.1 781031 R 195103 CDS YP_695106.1 110799275 4203070 complement(782631..782957) 1 NC_008261.1 Selenoprotein; identified by match to protein family HMM TIGR01911; hesB family protein 782957 4203070 CPF_0653 Clostridium perfringens ATCC 13124 hesB family protein YP_695106.1 782631 R 195103 CDS YP_695107.1 110801117 4203292 complement(783059..783403) 1 NC_008261.1 identified by match to protein family HMM TIGR01911; hesB family protein 783403 4203292 CPF_0654 Clostridium perfringens ATCC 13124 hesB family protein YP_695107.1 783059 R 195103 CDS YP_695108.1 110801382 4203463 783950..784492 1 NC_008261.1 hypothetical protein 784492 4203463 CPF_0655 Clostridium perfringens ATCC 13124 hypothetical protein YP_695108.1 783950 D 195103 CDS YP_695109.1 110800442 4202362 785000..786013 1 NC_008261.1 hypothetical protein 786013 4202362 CPF_0656 Clostridium perfringens ATCC 13124 hypothetical protein YP_695109.1 785000 D 195103 CDS YP_695110.1 110799770 4203513 complement(786159..788609) 1 NC_008261.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 788609 leuS 4203513 leuS Clostridium perfringens ATCC 13124 leucyl-tRNA synthetase YP_695110.1 786159 R 195103 CDS YP_695111.1 110799539 4202636 789049..789192 1 NC_008261.1 identified by similarity to GB:BAC14641.1; hypothetical protein 789192 4202636 CPF_0658 Clostridium perfringens ATCC 13124 hypothetical protein YP_695111.1 789049 D 195103 CDS YP_695112.1 110800948 4203337 789376..789507 1 NC_008261.1 hypothetical protein 789507 4203337 CPF_0659 Clostridium perfringens ATCC 13124 hypothetical protein YP_695112.1 789376 D 195103 CDS YP_695113.1 110800358 4202025 789542..789721 1 NC_008261.1 hypothetical protein 789721 4202025 CPF_0660 Clostridium perfringens ATCC 13124 hypothetical protein YP_695113.1 789542 D 195103 CDS YP_695114.1 110799384 4203259 789763..791019 1 NC_008261.1 identified by match to protein family HMM PF00654; voltage-gated chloride channel family protein 791019 4203259 CPF_0661 Clostridium perfringens ATCC 13124 voltage-gated chloride channel family protein YP_695114.1 789763 D 195103 CDS YP_695115.1 110799115 4203045 complement(791089..791655) 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 791655 4203045 CPF_0662 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695115.1 791089 R 195103 CDS YP_695116.1 110799356 4203094 791947..792309 1 NC_008261.1 hypothetical protein 792309 4203094 CPF_0663 Clostridium perfringens ATCC 13124 hypothetical protein YP_695116.1 791947 D 195103 CDS YP_695117.1 110801046 4202598 792506..793492 1 NC_008261.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 793492 birA 4202598 birA Clostridium perfringens ATCC 13124 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_695117.1 792506 D 195103 CDS YP_695118.1 110800224 4202943 793649..794734 1 NC_008261.1 identified by match to protein family HMM PF00570; HRDC domain-containing protein 794734 4202943 CPF_0665 Clostridium perfringens ATCC 13124 HRDC domain-containing protein YP_695118.1 793649 D 195103 CDS YP_695119.1 110801089 4202858 794736..794903 1 NC_008261.1 hypothetical protein 794903 4202858 CPF_0666 Clostridium perfringens ATCC 13124 hypothetical protein YP_695119.1 794736 D 195103 CDS YP_695120.1 110800250 4201837 795004..795738 1 NC_008261.1 hypothetical protein 795738 4201837 CPF_0667 Clostridium perfringens ATCC 13124 hypothetical protein YP_695120.1 795004 D 195103 CDS YP_695121.1 110800074 4202438 795928..796233 1 NC_008261.1 hypothetical protein 796233 4202438 CPF_0668 Clostridium perfringens ATCC 13124 hypothetical protein YP_695121.1 795928 D 195103 CDS YP_695122.1 110799499 4202052 796480..797130 1 NC_008261.1 identified by match to protein family HMM PF00692; deoxyuridine 5-triphosphate nucleotidohydrolase 797130 dut 4202052 dut Clostridium perfringens ATCC 13124 deoxyuridine 5-triphosphate nucleotidohydrolase YP_695122.1 796480 D 195103 CDS YP_695123.1 110798961 4201374 797635..798945 1 NC_008261.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 798945 thiC 4201374 thiC Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiC YP_695123.1 797635 D 195103 CDS YP_695124.1 110799768 4203511 799183..802983 1 NC_008261.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 802983 4203511 CPF_0671 Clostridium perfringens ATCC 13124 phosphoribosylformylglycinamidine synthase YP_695124.1 799183 D 195103 CDS YP_695125.1 110798984 4201107 803294..803773 1 NC_008261.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 803773 purE 4201107 purE Clostridium perfringens ATCC 13124 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_695125.1 803294 D 195103 CDS YP_695126.1 110799762 4203660 803773..804480 1 NC_008261.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 804480 purC 4203660 purC Clostridium perfringens ATCC 13124 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_695126.1 803773 D 195103 CDS YP_695127.1 110800675 4202518 804526..805947 1 NC_008261.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 805947 purF 4202518 purF Clostridium perfringens ATCC 13124 amidophosphoribosyltransferase YP_695127.1 804526 D 195103 CDS YP_695128.1 110800755 4201607 805948..806949 1 NC_008261.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 806949 purM 4201607 purM Clostridium perfringens ATCC 13124 phosphoribosylaminoimidazole synthetase YP_695128.1 805948 D 195103 CDS YP_695129.1 110798651 4202699 806937..807551 1 NC_008261.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 807551 purN 4202699 purN Clostridium perfringens ATCC 13124 phosphoribosylglycinamide formyltransferase YP_695129.1 806937 D 195103 CDS YP_695130.1 110799553 4202650 807564..809069 1 NC_008261.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 809069 purH 4202650 purH Clostridium perfringens ATCC 13124 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_695130.1 807564 D 195103 CDS YP_695131.1 110801134 4201635 809185..810435 1 NC_008261.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 810435 purD 4201635 purD Clostridium perfringens ATCC 13124 phosphoribosylamine--glycine ligase YP_695131.1 809185 D 195103 CDS YP_695132.1 110799848 4203435 811348..811710 1 NC_008261.1 identified by similarity to GB:AAO82850.1; match to protein family HMM PF03733; hypothetical protein 811710 4203435 CPF_0680 Clostridium perfringens ATCC 13124 hypothetical protein YP_695132.1 811348 D 195103 CDS YP_695133.1 110801157 4201017 812243..812785 1 NC_008261.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 812785 4201017 CPF_0681 Clostridium perfringens ATCC 13124 rubredoxin/rubrerythrin YP_695133.1 812243 D 195103 CDS YP_695134.1 110798800 4201776 complement(812918..814318) 1 NC_008261.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 814318 argH 4201776 argH Clostridium perfringens ATCC 13124 argininosuccinate lyase YP_695134.1 812918 R 195103 CDS YP_695135.1 110799516 4203178 complement(814412..815623) 1 NC_008261.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 815623 argG 4203178 argG Clostridium perfringens ATCC 13124 argininosuccinate synthase YP_695135.1 814412 R 195103 CDS YP_695136.1 110798664 4202303 816248..816895 1 NC_008261.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 816895 4202303 CPF_0684 Clostridium perfringens ATCC 13124 translaldolase YP_695136.1 816248 D 195103 CDS YP_695137.1 110799287 4202617 817295..822355 1 NC_008261.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02018; match to protein family HMM PF07532; fibronectin type III 822355 4202617 CPF_0685 Clostridium perfringens ATCC 13124 fibronectin type III YP_695137.1 817295 D 195103 CDS YP_695138.1 110799116 4203046 822530..822661 1 NC_008261.1 hypothetical protein 822661 4203046 CPF_0686 Clostridium perfringens ATCC 13124 hypothetical protein YP_695138.1 822530 D 195103 CDS YP_695139.1 110799935 4201459 822827..823840 1 NC_008261.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 823840 aroF 4201459 aroF Clostridium perfringens ATCC 13124 3-deoxy-7-phosphoheptulonate synthase YP_695139.1 822827 D 195103 CDS YP_695140.1 110800854 4201276 823961..825013 1 NC_008261.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 825013 aroB 4201276 aroB Clostridium perfringens ATCC 13124 3-dehydroquinate synthase YP_695140.1 823961 D 195103 CDS YP_695141.1 110799152 4202833 825206..826480 1 NC_008261.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 826480 aroA 4202833 aroA Clostridium perfringens ATCC 13124 3-phosphoshikimate 1-carboxyvinyltransferase YP_695141.1 825206 D 195103 CDS YP_695142.1 110800421 4203801 826544..827617 1 NC_008261.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 827617 aroC 4203801 aroC Clostridium perfringens ATCC 13124 chorismate synthase YP_695142.1 826544 D 195103 CDS YP_695143.1 110801246 4203323 827786..828079 1 NC_008261.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; chorismate mutase 828079 4203323 CPF_0691 Clostridium perfringens ATCC 13124 chorismate mutase YP_695143.1 827786 D 195103 CDS YP_695144.1 110799243 4201812 828255..828347 1 NC_008261.1 hypothetical protein 828347 4201812 CPF_0692 Clostridium perfringens ATCC 13124 hypothetical protein YP_695144.1 828255 D 195103 CDS YP_695145.1 110799915 4203210 828901..829716 1 NC_008261.1 identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 829716 aroE 4203210 aroE Clostridium perfringens ATCC 13124 shikimate 5-dehydrogenase YP_695145.1 828901 D 195103 CDS YP_695146.1 110800453 4202373 829970..830473 1 NC_008261.1 identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 830473 aroK 4202373 aroK Clostridium perfringens ATCC 13124 shikimate kinase YP_695146.1 829970 D 195103 CDS YP_695147.1 110801247 4203324 830540..830974 1 NC_008261.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 830974 aroQ 4203324 aroQ Clostridium perfringens ATCC 13124 3-dehydroquinate dehydratase YP_695147.1 830540 D 195103 CDS YP_695148.1 110799582 4202679 complement(830995..831336) 1 NC_008261.1 identified by match to protein family HMM PF01638; transcriptional regulator 831336 4202679 CPF_0696 Clostridium perfringens ATCC 13124 transcriptional regulator YP_695148.1 830995 R 195103 CDS YP_695149.1 110799893 4203909 831592..832698 1 NC_008261.1 identified by similarity to SP:P32382; match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 832698 4203909 CPF_0697 Clostridium perfringens ATCC 13124 FAD/FMN-binding oxidoreductase YP_695149.1 831592 D 195103 CDS YP_695150.1 110799091 4202811 833435..833950 1 NC_008261.1 hypothetical protein 833950 4202811 CPF_0698 Clostridium perfringens ATCC 13124 hypothetical protein YP_695150.1 833435 D 195103 CDS YP_695151.1 110799308 4203144 834077..834409 1 NC_008261.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 834409 4203144 CPF_0699 Clostridium perfringens ATCC 13124 PadR family transcriptional regulator YP_695151.1 834077 D 195103 CDS YP_695152.1 110800270 4203610 834411..835268 1 NC_008261.1 identified by similarity to GB:BAB80411.1; hypothetical protein 835268 4203610 CPF_0700 Clostridium perfringens ATCC 13124 hypothetical protein YP_695152.1 834411 D 195103 CDS YP_695153.1 110798740 4202437 835480..835974 1 NC_008261.1 hypothetical protein 835974 4202437 CPF_0701 Clostridium perfringens ATCC 13124 hypothetical protein YP_695153.1 835480 D 195103 CDS YP_695154.1 110799325 4202188 836142..836321 1 NC_008261.1 hypothetical protein 836321 4202188 CPF_0702 Clostridium perfringens ATCC 13124 hypothetical protein YP_695154.1 836142 D 195103 CDS YP_695155.1 110799975 4203757 836447..837337 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 837337 4203757 CPF_0703 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695155.1 836447 D 195103 CDS YP_695156.1 110800630 4202260 837339..838550 1 NC_008261.1 identified by similarity to GB:CAD65063.1; hypothetical protein 838550 4202260 CPF_0704 Clostridium perfringens ATCC 13124 hypothetical protein YP_695156.1 837339 D 195103 CDS YP_695157.1 110800687 4202530 838665..839654 1 NC_008261.1 identified by similarity to SP:P54965; match to protein family HMM PF02275; choloylglycine hydrolase 839654 4202530 CPF_0705 Clostridium perfringens ATCC 13124 choloylglycine hydrolase YP_695157.1 838665 D 195103 CDS YP_695158.1 110801383 4203464 840440..840922 1 NC_008261.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 840922 4203464 CPF_0706 Clostridium perfringens ATCC 13124 AsnC family transcriptional regulator YP_695158.1 840440 D 195103 CDS YP_695159.1 110799602 4203402 840919..842097 1 NC_008261.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00266; match to protein family HMM PF01212; aspartate aminotransferase 842097 4203402 CPF_0707 Clostridium perfringens ATCC 13124 aspartate aminotransferase YP_695159.1 840919 D 195103 CDS YP_695160.1 110801356 4203240 842212..843237 1 NC_008261.1 hypothetical protein 843237 4203240 CPF_0708 Clostridium perfringens ATCC 13124 hypothetical protein YP_695160.1 842212 D 195103 CDS YP_695161.1 110799425 4202540 complement(843294..843767) 1 NC_008261.1 hypothetical protein 843767 4202540 CPF_0709 Clostridium perfringens ATCC 13124 hypothetical protein YP_695161.1 843294 R 195103 CDS YP_695162.1 110798622 4202749 complement(843817..844959) 1 NC_008261.1 identified by match to protein family HMM PF06925; monogalactosyldiacylglycerol synthase 844959 4202749 CPF_0710 Clostridium perfringens ATCC 13124 monogalactosyldiacylglycerol synthase YP_695162.1 843817 R 195103 CDS YP_695163.1 110801075 4201749 845450..845953 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 845953 4201749 CPF_0711 Clostridium perfringens ATCC 13124 acetyltransferase YP_695163.1 845450 D 195103 CDS YP_695164.1 110800215 4202934 846213..846692 1 NC_008261.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 846692 4202934 CPF_0712 Clostridium perfringens ATCC 13124 ECF subfamily RNA polymerase sigma factor YP_695164.1 846213 D 195103 CDS YP_695165.1 110799874 4202996 846769..848181 1 NC_008261.1 identified by similarity to GB:AAO36314.1; hypothetical protein 848181 4202996 CPF_0713 Clostridium perfringens ATCC 13124 hypothetical protein YP_695165.1 846769 D 195103 CDS YP_695166.1 110799085 4201053 848402..849604 1 NC_008261.1 identified by match to protein family HMM PF02272; match to protein family HMM PF07973; DHH domain-containing protein 849604 4201053 CPF_0714 Clostridium perfringens ATCC 13124 DHH domain-containing protein YP_695166.1 848402 D 195103 CDS YP_695167.1 110800548 4202900 849659..850663 1 NC_008261.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 850663 4202900 CPF_0715 Clostridium perfringens ATCC 13124 glycosyl transferase family protein YP_695167.1 849659 D 195103 CDS YP_695168.1 110801094 4202863 850890..851990 1 NC_008261.1 identified by match to protein family HMM PF01594; hypothetical protein 851990 4202863 CPF_0716 Clostridium perfringens ATCC 13124 hypothetical protein YP_695168.1 850890 D 195103 CDS YP_695169.1 110800950 4203339 852189..853028 1 NC_008261.1 identified by match to protein family HMM PF02535; zinc transporter ZupT 853028 4203339 CPF_0717 Clostridium perfringens ATCC 13124 zinc transporter ZupT YP_695169.1 852189 D 195103 CDS YP_695170.2 261876170 4201317 853216..853980 1 NC_008261.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 853980 4201317 CPF_0718 Clostridium perfringens ATCC 13124 DeoR family transcriptional regulator YP_695170.2 853216 D 195103 CDS YP_695171.1 110799080 4201048 854099..854887 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 854887 4201048 CPF_0719 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695171.1 854099 D 195103 CDS YP_695172.1 110801161 4201021 855091..856113 1 NC_008261.1 identified by similarity to SP:P37956; match to protein family HMM PF04055; match to protein family HMM TIGR00620; spore photoproduct lyase 856113 splB 4201021 splB Clostridium perfringens ATCC 13124 spore photoproduct lyase YP_695172.1 855091 D 195103 CDS YP_695173.1 110799574 4202671 856777..858861 1 NC_008261.1 identified by similarity to SP:Q54727; match to protein family HMM PF02012; match to protein family HMM PF02973; exo-alpha-sialidase 858861 4202671 CPF_0721 Clostridium perfringens ATCC 13124 exo-alpha-sialidase YP_695173.1 856777 D 195103 CDS YP_695174.1 110798767 4201883 858909..860063 1 NC_008261.1 lipoprotein 860063 4201883 CPF_0722 Clostridium perfringens ATCC 13124 lipoprotein YP_695174.1 858909 D 195103 CDS YP_695175.1 110800047 4203715 860407..861234 1 NC_008261.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase 861234 4203715 CPF_0723 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_695175.1 860407 D 195103 CDS YP_695176.1 110799197 4202389 861338..861802 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 861802 4202389 CPF_0724 Clostridium perfringens ATCC 13124 acetyltransferase YP_695176.1 861338 D 195103 CDS YP_695177.1 110801352 4203236 862176..862352 1 NC_008261.1 hypothetical protein 862352 4203236 CPF_0725 Clostridium perfringens ATCC 13124 hypothetical protein YP_695177.1 862176 D 195103 CDS YP_695178.1 110800513 4203368 862480..863163 1 NC_008261.1 identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290; hypothetical protein 863163 4203368 CPF_0726 Clostridium perfringens ATCC 13124 hypothetical protein YP_695178.1 862480 D 195103 CDS YP_695179.1 110800821 4201091 complement(863377..864273) 1 NC_008261.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 864273 4201091 CPF_0727 Clostridium perfringens ATCC 13124 LysR family transcriptional regulator YP_695179.1 863377 R 195103 CDS YP_695180.1 110798718 4201324 864623..866323 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 866323 4201324 CPF_0728 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide oxidoreductase YP_695180.1 864623 D 195103 CDS YP_695181.1 110799535 4202632 866429..867715 1 NC_008261.1 identified by match to protein family HMM PF04143; hypothetical protein 867715 4202632 CPF_0729 Clostridium perfringens ATCC 13124 hypothetical protein YP_695181.1 866429 D 195103 CDS YP_695182.1 110801084 4202853 867804..869114 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 869114 4202853 CPF_0730 Clostridium perfringens ATCC 13124 amino acid permease YP_695182.1 867804 D 195103 CDS YP_695183.1 110798937 4202168 869254..870372 1 NC_008261.1 identified by match to protein family HMM PF00480; ROK family protein 870372 4202168 CPF_0731 Clostridium perfringens ATCC 13124 ROK family protein YP_695183.1 869254 D 195103 CDS YP_695184.1 110798919 4200983 870578..871624 1 NC_008261.1 identified by similarity to SP:Q06004; match to protein family HMM PF00107; L-iditol 2-dehydrogenase 871624 4200983 CPF_0732 Clostridium perfringens ATCC 13124 L-iditol 2-dehydrogenase YP_695184.1 870578 D 195103 CDS YP_695185.1 110799403 4201157 871747..873144 1 NC_008261.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sodium:glactoside symporter family protein 873144 4201157 CPF_0733 Clostridium perfringens ATCC 13124 sodium:glactoside symporter family protein YP_695185.1 871747 D 195103 CDS YP_695186.1 110800216 4202935 873165..874097 1 NC_008261.1 identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294; fructokinase 874097 scrK 4202935 scrK Clostridium perfringens ATCC 13124 fructokinase YP_695186.1 873165 D 195103 CDS YP_695187.1 110799170 4202910 complement(874183..874845) 1 NC_008261.1 identified by similarity to GB:CAC69846.1; match to protein family HMM PF07299; fibronectin-binding protein 874845 4202910 CPF_0735 Clostridium perfringens ATCC 13124 fibronectin-binding protein YP_695187.1 874183 R 195103 CDS YP_695188.1 110800418 4202047 875747..876061 1 NC_008261.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 876061 trx 4202047 trx Clostridium perfringens ATCC 13124 thioredoxin YP_695188.1 875747 D 195103 CDS YP_695189.1 110801272 4201579 876369..876701 1 NC_008261.1 identified by match to protein family HMM PF01638; transcriptional regulator 876701 4201579 CPF_0738 Clostridium perfringens ATCC 13124 transcriptional regulator YP_695189.1 876369 D 195103 CDS YP_695190.1 110799581 4202678 876727..877938 1 NC_008261.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683; cytochrome C-type biogenesis protein 877938 4202678 CPF_0739 Clostridium perfringens ATCC 13124 cytochrome C-type biogenesis protein YP_695190.1 876727 D 195103 CDS YP_695191.1 110800985 4201660 878464..880185 1 NC_008261.1 identified by match to protein family HMM PF07859; alpha/beta hydrolase 880185 4201660 CPF_0740 Clostridium perfringens ATCC 13124 alpha/beta hydrolase YP_695191.1 878464 D 195103 CDS YP_695192.1 110799709 4201193 880647..882098 1 NC_008261.1 identified by match to protein family HMM PF02554; carbon starvation protein CstA 882098 cstA 4201193 cstA Clostridium perfringens ATCC 13124 carbon starvation protein CstA YP_695192.1 880647 D 195103 CDS YP_695193.1 110800942 4202125 882229..882648 1 NC_008261.1 hypothetical protein 882648 4202125 CPF_0742 Clostridium perfringens ATCC 13124 hypothetical protein YP_695193.1 882229 D 195103 CDS YP_695194.1 110800056 4203763 882852..883154 1 NC_008261.1 hypothetical protein 883154 4203763 CPF_0743 Clostridium perfringens ATCC 13124 hypothetical protein YP_695194.1 882852 D 195103 CDS YP_695195.1 110801323 4201924 complement(883242..883796) 1 NC_008261.1 identified by similarity to GB:BAC12302.1; hypothetical protein 883796 4201924 CPF_0744 Clostridium perfringens ATCC 13124 hypothetical protein YP_695195.1 883242 R 195103 CDS YP_695196.1 110800663 4201707 884193..884894 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 884894 4201707 CPF_0745 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695196.1 884193 D 195103 CDS YP_695197.1 110799031 4202281 884911..888309 1 NC_008261.1 identified by match to protein family HMM PF02687; ABC transporter permease 888309 4202281 CPF_0746 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695197.1 884911 D 195103 CDS YP_695198.1 110798830 4202489 888715..889053 1 NC_008261.1 identified by similarity to PIR:F86818; hypothetical protein 889053 4202489 CPF_0747 Clostridium perfringens ATCC 13124 hypothetical protein YP_695198.1 888715 D 195103 CDS YP_695199.1 110800790 4202226 complement(889155..890606) 1 NC_008261.1 identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 890606 cls 4202226 cls Clostridium perfringens ATCC 13124 cardiolipin synthetase YP_695199.1 889155 R 195103 CDS YP_695200.1 110800115 4203882 891054..891548 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 891548 4203882 CPF_0749 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695200.1 891054 D 195103 CDS YP_695201.1 110799212 4201216 complement(891712..892974) 1 NC_008261.1 identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969; cytosine deaminase 892974 codA 4201216 codA Clostridium perfringens ATCC 13124 cytosine deaminase YP_695201.1 891712 R 195103 CDS YP_695202.1 110801095 4202864 893422..894177 1 NC_008261.1 identified by similarity to GB:BAA25929.1; match to protein family HMM PF02633; creatininase 894177 4202864 CPF_0751 Clostridium perfringens ATCC 13124 creatininase YP_695202.1 893422 D 195103 CDS YP_695203.1 110800503 4203358 894226..895152 1 NC_008261.1 identified by match to protein family HMM PF00892; hypothetical protein 895152 4203358 CPF_0752 Clostridium perfringens ATCC 13124 hypothetical protein YP_695203.1 894226 D 195103 CDS YP_695204.1 110798790 4201127 complement(895279..896478) 1 NC_008261.1 identified by similarity to GB:AAS19481.1; match to protein family HMM PF07905; hypothetical protein 896478 4201127 CPF_0753 Clostridium perfringens ATCC 13124 hypothetical protein YP_695204.1 895279 R 195103 CDS YP_695205.1 110798606 4202733 896667..897077 1 NC_008261.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 897077 def 4202733 def Clostridium perfringens ATCC 13124 peptide deformylase YP_695205.1 896667 D 195103 CDS YP_695206.1 110800875 4203869 complement(897168..897392) 1 NC_008261.1 hypothetical protein 897392 4203869 CPF_0755 Clostridium perfringens ATCC 13124 hypothetical protein YP_695206.1 897168 R 195103 CDS YP_695207.1 110799556 4203491 complement(897410..898675) 1 NC_008261.1 identified by similarity to SP:P24943; match to protein family HMM PF00375; proton/sodium-glutamate symport protein 898675 4203491 CPF_0756 Clostridium perfringens ATCC 13124 proton/sodium-glutamate symport protein YP_695207.1 897410 R 195103 CDS YP_695208.1 110798851 4201479 complement(899251..899943) 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD family hydrolase 899943 4201479 CPF_0757 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695208.1 899251 R 195103 CDS YP_695209.1 110800804 4202240 900169..901122 1 NC_008261.1 hypothetical protein 901122 4202240 CPF_0758 Clostridium perfringens ATCC 13124 hypothetical protein YP_695209.1 900169 D 195103 CDS YP_695210.1 110800099 4202404 complement(901357..901986) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 901986 4202404 CPF_0759 Clostridium perfringens ATCC 13124 acetyltransferase YP_695210.1 901357 R 195103 CDS YP_695211.1 110799865 4202987 902138..902941 1 NC_008261.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 902941 4202987 CPF_0760 Clostridium perfringens ATCC 13124 MerR family transcriptional regulator YP_695211.1 902138 D 195103 CDS YP_695212.1 110799257 4202081 complement(903078..904433) 1 NC_008261.1 identified by similarity to PIR:F96989; hypothetical protein 904433 4202081 CPF_0761 Clostridium perfringens ATCC 13124 hypothetical protein YP_695212.1 903078 R 195103 CDS YP_695213.1 110801152 4201012 904740..904895 1 NC_008261.1 identified by similarity to PIR:A96978; hypothetical protein 904895 4201012 CPF_0762 Clostridium perfringens ATCC 13124 hypothetical protein YP_695213.1 904740 D 195103 CDS YP_695214.1 110800537 4202889 complement(904953..905447) 1 NC_008261.1 identified by similarity to SP:P37501; hypothetical protein 905447 4202889 CPF_0763 Clostridium perfringens ATCC 13124 hypothetical protein YP_695214.1 904953 R 195103 CDS YP_695215.1 110798681 4202320 905799..907163 1 NC_008261.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein 907163 4202320 CPF_0764 Clostridium perfringens ATCC 13124 sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein YP_695215.1 905799 D 195103 CDS YP_695216.1 110799290 4202620 complement(907386..908225) 1 NC_008261.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator 908225 4202620 CPF_0765 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695216.1 907386 R 195103 CDS YP_695217.1 110799026 4202276 908589..911627 1 NC_008261.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; beta-galactosidase 911627 4202276 CPF_0766 Clostridium perfringens ATCC 13124 beta-galactosidase YP_695217.1 908589 D 195103 CDS YP_695218.1 110799554 4202651 912042..913481 1 NC_008261.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266; Rieske family iron-sulfur cluster-binding protein 913481 4202651 CPF_0767 Clostridium perfringens ATCC 13124 Rieske family iron-sulfur cluster-binding protein YP_695218.1 912042 D 195103 CDS YP_695219.1 110798923 4200987 complement(913833..915212) 1 NC_008261.1 identified by match to protein family HMM PF03600; hypothetical protein 915212 4200987 CPF_0768 Clostridium perfringens ATCC 13124 hypothetical protein YP_695219.1 913833 R 195103 CDS YP_695220.1 110800814 4201084 915626..916405 1 NC_008261.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 916405 4201084 CPF_0769 Clostridium perfringens ATCC 13124 alpha/beta hydrolase YP_695220.1 915626 D 195103 CDS YP_695221.1 110800091 4202455 916586..917875 1 NC_008261.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 917875 aspC 4202455 aspC Clostridium perfringens ATCC 13124 aspartyl-tRNA synthetase YP_695221.1 916586 D 195103 CDS YP_695222.1 110799961 4203743 918285..919934 1 NC_008261.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 919934 4203743 CPF_0771 Clostridium perfringens ATCC 13124 cell wall surface anchor family protein YP_695222.1 918285 D 195103 CDS YP_695223.1 110799042 4201298 920024..920863 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 920863 4201298 CPF_0772 Clostridium perfringens ATCC 13124 sortase YP_695223.1 920024 D 195103 CDS YP_695224.1 110801182 4203103 920872..921732 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 921732 4203103 CPF_0773 Clostridium perfringens ATCC 13124 sortase YP_695224.1 920872 D 195103 CDS YP_695225.1 110799635 4202500 921885..924671 1 NC_008261.1 identified by match to protein family HMM PF00092; match to protein family HMM PF05738; von Willebrand factor A 924671 4202500 CPF_0774 Clostridium perfringens ATCC 13124 von Willebrand factor A YP_695225.1 921885 D 195103 CDS YP_695226.1 110800519 4201175 924969..926426 1 NC_008261.1 identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043; hypothetical protein 926426 4201175 CPF_0775 Clostridium perfringens ATCC 13124 hypothetical protein YP_695226.1 924969 D 195103 CDS YP_695227.1 110798869 4201147 926776..927588 1 NC_008261.1 identified by similarity to GB:AAO36389.1; match to protein family HMM PF01814; match to protein family HMM PF04282; hypothetical protein 927588 4201147 CPF_0776 Clostridium perfringens ATCC 13124 hypothetical protein YP_695227.1 926776 D 195103 CDS YP_695228.1 110799057 4202560 927631..928329 1 NC_008261.1 identified by similarity to GB:AAB81287.1; match to protein family HMM PF01814; match to protein family HMM PF04405; scdA protein 928329 4202560 CPF_0777 Clostridium perfringens ATCC 13124 scdA protein YP_695228.1 927631 D 195103 CDS YP_695229.1 110799775 4203518 928482..929192 1 NC_008261.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 929192 4203518 CPF_0778 Clostridium perfringens ATCC 13124 Crp/FNR family transcriptional regulator YP_695229.1 928482 D 195103 CDS YP_695230.1 110799329 4202192 complement(929445..929606) 1 NC_008261.1 identified by match to protein family HMM PF00301; rubredoxin 929606 4202192 CPF_0779 Clostridium perfringens ATCC 13124 rubredoxin YP_695230.1 929445 R 195103 CDS YP_695231.1 110801415 4203011 930188..930934 1 NC_008261.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase, FAD-binding 930934 4203011 CPF_0780 Clostridium perfringens ATCC 13124 oxidoreductase, FAD-binding YP_695231.1 930188 D 195103 CDS YP_695232.1 110799348 4203086 931153..931863 1 NC_008261.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 931863 4203086 CPF_0781 Clostridium perfringens ATCC 13124 Crp/FNR family transcriptional regulator YP_695232.1 931153 D 195103 CDS YP_695233.1 110799465 4201335 complement(931918..932079) 1 NC_008261.1 identified by similarity to SP:P00268; match to protein family HMM PF00301; rubredoxin 932079 4201335 CPF_0782 Clostridium perfringens ATCC 13124 rubredoxin YP_695233.1 931918 R 195103 CDS YP_695234.1 110800068 4203775 complement(932106..933326) 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 933326 4203775 CPF_0783 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_695234.1 932106 R 195103 CDS YP_695235.1 110799231 4201800 933542..934105 1 NC_008261.1 identified by similarity to GB:AAD52147.1; match to protein family HMM PF00578; alkyl hydroperoxide reductase 934105 ahpC 4201800 ahpC Clostridium perfringens ATCC 13124 alkyl hydroperoxide reductase YP_695235.1 933542 D 195103 CDS YP_695236.1 110799891 4203907 934592..936262 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 936262 4203907 CPF_0785 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide oxidoreductase YP_695236.1 934592 D 195103 CDS YP_695237.1 110800562 4201433 936459..936644 1 NC_008261.1 hypothetical protein 936644 4201433 CPF_0786 Clostridium perfringens ATCC 13124 hypothetical protein YP_695237.1 936459 D 195103 CDS YP_695238.1 110801207 4203128 936752..937810 1 NC_008261.1 hypothetical protein 937810 4203128 CPF_0787 Clostridium perfringens ATCC 13124 hypothetical protein YP_695238.1 936752 D 195103 CDS YP_695239.1 110798963 4201376 937846..938775 1 NC_008261.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 938775 panE 4201376 panE Clostridium perfringens ATCC 13124 2-dehydropantoate 2-reductase YP_695239.1 937846 D 195103 CDS YP_695240.1 110799506 4202059 939036..939461 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 939461 4202059 CPF_0789 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695240.1 939036 D 195103 CDS YP_695241.1 110801300 4201901 939680..940183 1 NC_008261.1 hypothetical protein 940183 4201901 CPF_0790 Clostridium perfringens ATCC 13124 hypothetical protein YP_695241.1 939680 D 195103 CDS YP_695242.1 110800673 4202516 940286..940729 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 940729 4202516 CPF_0791 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695242.1 940286 D 195103 CDS YP_695243.1 110800393 4201825 940814..941695 1 NC_008261.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin 941695 4201825 CPF_0792 Clostridium perfringens ATCC 13124 pirin YP_695243.1 940814 D 195103 CDS YP_695244.1 110798742 4200942 941729..942325 1 NC_008261.1 identified by match to protein family HMM PF02525; flavodoxin family protein 942325 4200942 CPF_0793 Clostridium perfringens ATCC 13124 flavodoxin family protein YP_695244.1 941729 D 195103 CDS YP_695245.1 110800881 4203875 942572..943087 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 943087 4203875 CPF_0794 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695245.1 942572 D 195103 CDS YP_695246.1 110800022 4203943 complement(943237..943818) 1 NC_008261.1 identified by match to protein family HMM PF01569; PAP2 family protein 943818 4203943 CPF_0795 Clostridium perfringens ATCC 13124 PAP2 family protein YP_695246.1 943237 R 195103 CDS YP_695247.1 110799199 4202391 944042..944782 1 NC_008261.1 identified by similarity to SP:P28671; hypothetical protein 944782 4202391 CPF_0796 Clostridium perfringens ATCC 13124 hypothetical protein YP_695247.1 944042 D 195103 CDS YP_695248.1 110801268 4201575 944953..946197 1 NC_008261.1 identified by similarity to SP:Q56106; FliB family protein 946197 4201575 CPF_0797 Clostridium perfringens ATCC 13124 FliB family protein YP_695248.1 944953 D 195103 CDS YP_695249.1 110800449 4202369 complement(946332..946859) 1 NC_008261.1 identified by similarity to GB:AAS08237.1; hypothetical protein 946859 4202369 CPF_0798 Clostridium perfringens ATCC 13124 hypothetical protein YP_695249.1 946332 R 195103 CDS YP_695250.1 110799412 4201166 947377..947844 1 NC_008261.1 hypothetical protein 947844 4201166 CPF_0799 Clostridium perfringens ATCC 13124 hypothetical protein YP_695250.1 947377 D 195103 CDS YP_695251.1 110798610 4202737 947972..948685 1 NC_008261.1 identified by similarity to GB:AAT29428.1; match to protein family HMM PF01863; hypothetical protein 948685 4202737 CPF_0800 Clostridium perfringens ATCC 13124 hypothetical protein YP_695251.1 947972 D 195103 CDS YP_695252.1 110799120 4203050 948869..950743 1 NC_008261.1 identified by similarity to SP:O34411; match to protein family HMM PF00990; match to protein family HMM PF02811; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR01856; sensory box protein/histidinol phosphate phosphatase 950743 4203050 CPF_0801 Clostridium perfringens ATCC 13124 sensory box protein/histidinol phosphate phosphatase YP_695252.1 948869 D 195103 CDS YP_695253.1 110798751 4200952 951039..952871 1 NC_008261.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903; glycosyl hydrolase 952871 4200952 CPF_0802 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695253.1 951039 D 195103 CDS YP_695254.1 110800835 4203927 953116..954399 1 NC_008261.1 identified by similarity to GB:AAQ66048.1; match to protein family HMM PF06354; hypothetical protein 954399 4203927 CPF_0803 Clostridium perfringens ATCC 13124 hypothetical protein YP_695254.1 953116 D 195103 CDS YP_695255.1 110800407 4202036 complement(954688..955191) 1 NC_008261.1 hypothetical protein 955191 4202036 CPF_0804 Clostridium perfringens ATCC 13124 hypothetical protein YP_695255.1 954688 R 195103 CDS YP_695256.1 110801243 4203320 955511..956056 1 NC_008261.1 hypothetical protein 956056 4203320 CPF_0805 Clostridium perfringens ATCC 13124 hypothetical protein YP_695256.1 955511 D 195103 CDS YP_695257.1 110800413 4202042 complement(956096..956716) 1 NC_008261.1 identified by similarity to GB:AAT61415.1; match to protein family HMM PF02698; hypothetical protein 956716 4202042 CPF_0806 Clostridium perfringens ATCC 13124 hypothetical protein YP_695257.1 956096 R 195103 CDS YP_695258.1 110799166 4202847 956980..957924 1 NC_008261.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 957924 4202847 CPF_0807 Clostridium perfringens ATCC 13124 iron ABC transporter substrate-binding protein YP_695258.1 956980 D 195103 CDS YP_695259.1 110800873 4203867 958023..959036 1 NC_008261.1 identified by similarity to SP:P49936; match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuB 959036 4203867 CPF_0808 Clostridium perfringens ATCC 13124 ferrichrome ABC transporter permease FhuB YP_695259.1 958023 D 195103 CDS YP_695260.1 110799786 4202652 959040..960053 1 NC_008261.1 identified by similarity to SP:P49937; match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuG 960053 4202652 CPF_0809 Clostridium perfringens ATCC 13124 ferrichrome ABC transporter permease FhuG YP_695260.1 959040 D 195103 CDS YP_695261.1 110798843 4201471 960211..960993 1 NC_008261.1 identified by similarity to SP:P49938; match to protein family HMM PF00005; ferrichrome ABC transporter ATP-binding protein 960993 4201471 CPF_0810 Clostridium perfringens ATCC 13124 ferrichrome ABC transporter ATP-binding protein YP_695261.1 960211 D 195103 CDS YP_695262.1 110798935 4202166 961312..961800 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 961800 4202166 CPF_0811 Clostridium perfringens ATCC 13124 acetyltransferase YP_695262.1 961312 D 195103 CDS YP_695263.1 110800087 4202451 961868..962083 1 NC_008261.1 identified by similarity to GB:AAP11485.1; hypothetical protein 962083 4202451 CPF_0812 Clostridium perfringens ATCC 13124 hypothetical protein YP_695263.1 961868 D 195103 CDS YP_695264.1 110800860 4201282 962076..962393 1 NC_008261.1 hypothetical protein 962393 4201282 CPF_0813 Clostridium perfringens ATCC 13124 hypothetical protein YP_695264.1 962076 D 195103 CDS YP_695265.1 110799100 4202820 complement(962605..962931) 1 NC_008261.1 hypothetical protein 962931 4202820 CPF_0814 Clostridium perfringens ATCC 13124 hypothetical protein YP_695265.1 962605 R 195103 CDS YP_695266.1 110799293 4202623 963334..966717 1 NC_008261.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644; glycosyl hydrolase 966717 4202623 CPF_0815 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695266.1 963334 D 195103 CDS YP_695267.1 110799404 4201158 966918..967826 1 NC_008261.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 967826 ddl 4201158 ddl Clostridium perfringens ATCC 13124 D-alanine--D-alanine ligase YP_695267.1 966918 D 195103 CDS YP_695268.1 110801425 4203021 967973..968800 1 NC_008261.1 identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 968800 4203021 CPF_0817 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695268.1 967973 D 195103 CDS YP_695269.1 110800606 4203580 969127..970107 1 NC_008261.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; PTS system mannose/fructose/sorbose family transporter subunit IIB 970107 4203580 CPF_0818 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IIB YP_695269.1 969127 D 195103 CDS YP_695270.1 110799160 4202841 970158..970961 1 NC_008261.1 identified by match to protein family HMM PF03609; PTS system mannose/fructose/sorbose family transporter subunit IIC 970961 4202841 CPF_0819 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IIC YP_695270.1 970158 D 195103 CDS YP_695271.1 110801273 4201580 970981..971892 1 NC_008261.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system mannose/fructose/sorbose family transporter subunit IID 971892 4201580 CPF_0820 Clostridium perfringens ATCC 13124 PTS system mannose/fructose/sorbose family transporter subunit IID YP_695271.1 970981 D 195103 CDS YP_695272.1 110801033 4201945 972063..972437 1 NC_008261.1 identified by similarity to GB:AAO79906.1; match to protein family HMM PF06115; hypothetical protein 972437 4201945 CPF_0821 Clostridium perfringens ATCC 13124 hypothetical protein YP_695272.1 972063 D 195103 CDS YP_695273.1 110800220 4202939 972821..973168 1 NC_008261.1 hypothetical protein 973168 4202939 CPF_0822 Clostridium perfringens ATCC 13124 hypothetical protein YP_695273.1 972821 D 195103 CDS YP_695274.1 110800089 4202453 973394..974311 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 974311 4202453 CPF_0823 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_695274.1 973394 D 195103 CDS YP_695275.1 110799294 4202624 974770..975552 1 NC_008261.1 identified by match to protein family HMM TIGR02206; hypothetical protein 975552 4202624 CPF_0824 Clostridium perfringens ATCC 13124 hypothetical protein YP_695275.1 974770 D 195103 CDS YP_695276.1 110801350 4203233 975809..976750 1 NC_008261.1 hypothetical protein 976750 4203233 CPF_0825 Clostridium perfringens ATCC 13124 hypothetical protein YP_695276.1 975809 D 195103 CDS YP_695277.1 110799258 4202082 977025..979439 1 NC_008261.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; glycosyl hydrolase 979439 4202082 CPF_0826 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695277.1 977025 D 195103 CDS YP_695278.1 110800021 4203942 980233..981186 1 NC_008261.1 identified by similarity to GB:BAB80538.1; match to protein family HMM PF00188; hypothetical protein 981186 4203942 CPF_0827 Clostridium perfringens ATCC 13124 hypothetical protein YP_695278.1 980233 D 195103 CDS YP_695279.1 110800002 4203844 981315..981461 1 NC_008261.1 hypothetical protein 981461 4203844 CPF_0828 Clostridium perfringens ATCC 13124 hypothetical protein YP_695279.1 981315 D 195103 CDS YP_695280.1 110800974 4202293 981513..983324 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 983324 4202293 CPF_0829 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695280.1 981513 D 195103 CDS YP_695281.1 110798894 4203429 983324..985114 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 985114 4203429 CPF_0830 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695281.1 983324 D 195103 CDS YP_695282.1 110799717 4201201 985331..985828 1 NC_008261.1 identified by similarity to GB:AAP25046.1; match to protein family HMM PF03703; hypothetical protein 985828 4201201 CPF_0831 Clostridium perfringens ATCC 13124 hypothetical protein YP_695282.1 985331 D 195103 CDS YP_695283.1 110800051 4203719 985837..987465 1 NC_008261.1 identified by match to protein family HMM PF03703; hypothetical protein 987465 4203719 CPF_0832 Clostridium perfringens ATCC 13124 hypothetical protein YP_695283.1 985837 D 195103 CDS YP_695284.1 110800612 4203586 987834..988118 1 NC_008261.1 identified by similarity to SP:P30338; match to protein family HMM PF01022; arsenical resistance operon repressor 988118 arsR 4203586 arsR Clostridium perfringens ATCC 13124 arsenical resistance operon repressor YP_695284.1 987834 D 195103 CDS YP_695285.1 110798754 4200955 988237..988635 1 NC_008261.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 988635 arsC 4200955 arsC Clostridium perfringens ATCC 13124 arsenate reductase YP_695285.1 988237 D 195103 CDS YP_695286.1 110798965 4201378 988652..989968 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 989968 4201378 CPF_0835 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_695286.1 988652 D 195103 CDS YP_695287.1 110798875 4201153 990160..990828 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 990828 4201153 CPF_0836 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695287.1 990160 D 195103 CDS YP_695288.1 110799475 4201345 990825..991835 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 991835 4201345 CPF_0837 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695288.1 990825 D 195103 CDS YP_695289.1 110800923 4203605 992119..992829 1 NC_008261.1 identified by match to protein family HMM PF02661; Fic family protein 992829 4203605 CPF_0838 Clostridium perfringens ATCC 13124 Fic family protein YP_695289.1 992119 D 195103 CDS YP_695290.1 110800310 4202152 992804..993088 1 NC_008261.1 identified by similarity to GB:CAE82085.1; hypothetical protein 993088 4202152 CPF_0839 Clostridium perfringens ATCC 13124 hypothetical protein YP_695290.1 992804 D 195103 CDS YP_695291.1 110798971 4201384 993403..994971 1 NC_008261.1 identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806; alpha-clostripain 994971 cloSI 4201384 cloSI Clostridium perfringens ATCC 13124 alpha-clostripain YP_695291.1 993403 D 195103 CDS YP_695292.1 110801258 4201564 995242..996009 1 NC_008261.1 identified by similarity to SP:O34697; match to protein family HMM PF00005; ABC transporter ATP-binding protein 996009 4201564 CPF_0841 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695292.1 995242 D 195103 CDS YP_695293.1 110800266 4203606 998325..999833 1 NC_008261.1 identified by match to protein family HMM PF01055; glycosyl hydrolase 999833 4203606 CPF_0843 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695293.1 998325 D 195103 CDS YP_695294.1 110800783 4201769 complement(1000085..1000387) 1 NC_008261.1 identified by match to protein family HMM PF07876; stress responsive alpha-beta barrel domain-containing protein 1000387 4201769 CPF_0844 Clostridium perfringens ATCC 13124 stress responsive alpha-beta barrel domain-containing protein YP_695294.1 1000085 R 195103 CDS YP_695295.1 110801103 4203278 1000650..1001792 1 NC_008261.1 identified by match to protein family HMM PF00266; class V aminotransferase 1001792 4203278 CPF_0845 Clostridium perfringens ATCC 13124 class V aminotransferase YP_695295.1 1000650 D 195103 CDS YP_695296.1 110800597 4203571 1001957..1002874 1 NC_008261.1 hypothetical protein 1002874 4203571 CPF_0846 Clostridium perfringens ATCC 13124 hypothetical protein YP_695296.1 1001957 D 195103 CDS YP_695297.1 110799832 4203730 1003079..1003618 1 NC_008261.1 identified by match to protein family HMM PF02915; rubrerythrin 1003618 rbr 4203730 rbr Clostridium perfringens ATCC 13124 rubrerythrin YP_695297.1 1003079 D 195103 CDS YP_695298.1 110801231 4203308 1004144..1007212 1 NC_008261.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748; glycosyl hydrolase 1007212 4203308 CPF_0848 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695298.1 1004144 D 195103 CDS YP_695299.1 110800241 4202765 complement(1007469..1008035) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1008035 4202765 CPF_0849 Clostridium perfringens ATCC 13124 acetyltransferase YP_695299.1 1007469 R 195103 CDS YP_695300.1 110799490 4202334 1008266..1009438 1 NC_008261.1 identified by similarity to SP:Q04944; match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1009438 4202334 CPF_0850 Clostridium perfringens ATCC 13124 NADH-dependent butanol dehydrogenase YP_695300.1 1008266 D 195103 CDS YP_695301.1 110800802 4202238 1009752..1010813 1 NC_008261.1 identified by similarity to SP:P37047; match to protein family HMM PF05651; carbohydrate diacid regulator 1010813 4202238 CPF_0851 Clostridium perfringens ATCC 13124 carbohydrate diacid regulator YP_695301.1 1009752 D 195103 CDS YP_695302.1 110799304 4203140 complement(1010854..1011024) 1 NC_008261.1 hypothetical protein 1011024 4203140 CPF_0852 Clostridium perfringens ATCC 13124 hypothetical protein YP_695302.1 1010854 R 195103 CDS YP_695303.1 110799021 4202271 1010960..1012219 1 NC_008261.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; permease 1012219 4202271 CPF_0853 Clostridium perfringens ATCC 13124 permease YP_695303.1 1010960 D 195103 CDS YP_695304.1 110800718 4202465 1012443..1013564 1 NC_008261.1 identified by similarity to SP:Q9Z9P2; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1013564 glxK 4202465 glxK Clostridium perfringens ATCC 13124 glycerate kinase YP_695304.1 1012443 D 195103 CDS YP_695305.1 110799701 4203385 1014223..1015659 1 NC_008261.1 identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase DeaD 1015659 deaD 4203385 deaD Clostridium perfringens ATCC 13124 ATP-dependent RNA helicase DeaD YP_695305.1 1014223 D 195103 CDS YP_695306.1 110799335 4202198 1015814..1016272 1 NC_008261.1 hypothetical protein 1016272 4202198 CPF_0856 Clostridium perfringens ATCC 13124 hypothetical protein YP_695306.1 1015814 D 195103 CDS YP_695307.1 110798712 4201318 1016461..1017837 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1017837 4201318 CPF_0857 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_695307.1 1016461 D 195103 CDS YP_695308.1 110798807 4201783 1017944..1018117 1 NC_008261.1 identified by similarity to PIR:E97182; hypothetical protein 1018117 4201783 CPF_0858 Clostridium perfringens ATCC 13124 hypothetical protein YP_695308.1 1017944 D 195103 CDS YP_695309.1 110800516 4203371 1018485..1024772 1 NC_008261.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554; alpha-N-acetylglucosaminidase 1024772 4203371 CPF_0859 Clostridium perfringens ATCC 13124 alpha-N-acetylglucosaminidase YP_695309.1 1018485 D 195103 CDS YP_695310.1 110800294 4202878 1025033..1025212 1 NC_008261.1 hypothetical protein 1025212 4202878 CPF_0860 Clostridium perfringens ATCC 13124 hypothetical protein YP_695310.1 1025033 D 195103 CDS YP_695311.1 110798951 4202182 complement(1025324..1026484) 1 NC_008261.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1026484 alr 4202182 alr Clostridium perfringens ATCC 13124 alanine racemase YP_695311.1 1025324 R 195103 CDS YP_695312.1 110800127 4203894 1027032..1027601 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1027601 4203894 CPF_0862 Clostridium perfringens ATCC 13124 acetyltransferase YP_695312.1 1027032 D 195103 CDS YP_695313.1 110800564 4201435 complement(1027653..1028915) 1 NC_008261.1 identified by match to protein family HMM PF02518; sensor histidine kinase 1028915 4201435 CPF_0863 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695313.1 1027653 R 195103 CDS YP_695314.1 110798698 4202220 complement(1028918..1029040) 1 NC_008261.1 hypothetical protein 1029040 4202220 CPF_0864 Clostridium perfringens ATCC 13124 hypothetical protein YP_695314.1 1028918 R 195103 CDS YP_695315.1 110800914 4203596 complement(1029042..1029605) 1 NC_008261.1 identified by similarity to GB:AAB63267.1; match to protein family HMM PF04647; AgrB family protein 1029605 4203596 CPF_0865 Clostridium perfringens ATCC 13124 AgrB family protein YP_695315.1 1029042 R 195103 CDS YP_695316.1 110800352 4202019 1029967..1031742 1 NC_008261.1 identified by match to protein family HMM PF00557; M24 family metallopeptidase 1031742 4202019 CPF_0866 Clostridium perfringens ATCC 13124 M24 family metallopeptidase YP_695316.1 1029967 D 195103 CDS YP_695317.1 110798686 4202208 1031981..1032124 1 NC_008261.1 hypothetical protein 1032124 4202208 CPF_0867 Clostridium perfringens ATCC 13124 hypothetical protein YP_695317.1 1031981 D 195103 CDS YP_695318.1 110800906 4203588 1032227..1033354 1 NC_008261.1 identified by similarity to SP:P39762; match to protein family HMM PF02073; metalloprotease 1033354 4203588 CPF_0868 Clostridium perfringens ATCC 13124 metalloprotease YP_695318.1 1032227 D 195103 CDS YP_695319.1 110799544 4202641 1033458..1033901 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1033901 4202641 CPF_0869 Clostridium perfringens ATCC 13124 acetyltransferase YP_695319.1 1033458 D 195103 CDS YP_695320.1 110800359 4202026 complement(1034084..1034749) 1 NC_008261.1 identified by match to protein family HMM PF02588; hypothetical protein 1034749 4202026 CPF_0870 Clostridium perfringens ATCC 13124 hypothetical protein YP_695320.1 1034084 R 195103 CDS YP_695321.1 110800784 4201770 complement(1034911..1036083) 1 NC_008261.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB 1036083 4201770 CPF_0871 Clostridium perfringens ATCC 13124 IS605 family transposase OrfB YP_695321.1 1034911 R 195103 CDS YP_695322.1 110799259 4202083 1036945..1037487 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1037487 4202083 CPF_0873 Clostridium perfringens ATCC 13124 acetyltransferase YP_695322.1 1036945 D 195103 CDS YP_695323.1 110799349 4203087 complement(1037743..1038498) 1 NC_008261.1 identified by match to protein family HMM PF06691; hypothetical protein 1038498 4203087 CPF_0874 Clostridium perfringens ATCC 13124 hypothetical protein YP_695323.1 1037743 R 195103 CDS YP_695324.1 110800876 4203870 1038706..1042596 1 NC_008261.1 identified by similarity to SP:P26831; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167; hyaluronoglucosaminidase 1042596 4203870 CPF_0875 Clostridium perfringens ATCC 13124 hyaluronoglucosaminidase YP_695324.1 1038706 D 195103 CDS YP_695325.1 110798909 4202140 complement(1042917..1043237) 1 NC_008261.1 identified by similarity to GB:AAD35845.1; match to protein family HMM PF01906; hypothetical protein 1043237 4202140 CPF_0876 Clostridium perfringens ATCC 13124 hypothetical protein YP_695325.1 1042917 R 195103 CDS YP_695326.1 110799457 4201327 1043676..1043864 1 NC_008261.1 hypothetical protein 1043864 4201327 CPF_0877 Clostridium perfringens ATCC 13124 hypothetical protein YP_695326.1 1043676 D 195103 CDS YP_695327.1 110800014 4203856 1043933..1044733 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1044733 4203856 CPF_0878 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695327.1 1043933 D 195103 CDS YP_695328.1 110798812 4201788 1044730..1046379 1 NC_008261.1 identified by similarity to GB:BAC24303.1; ABC transporter permease 1046379 4201788 CPF_0879 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695328.1 1044730 D 195103 CDS YP_695329.1 110799386 4203261 complement(1046533..1047318) 1 NC_008261.1 identified by match to protein family HMM PF01476; LysM domain-containing protein 1047318 4203261 CPF_0880 Clostridium perfringens ATCC 13124 LysM domain-containing protein YP_695329.1 1046533 R 195103 CDS YP_695330.1 110800031 4203952 complement(1047643..1048194) 1 NC_008261.1 identified by similarity to PIR:F70426; hypothetical protein 1048194 4203952 CPF_0881 Clostridium perfringens ATCC 13124 hypothetical protein YP_695330.1 1047643 R 195103 CDS YP_695331.1 110799213 4201217 1048515..1049165 1 NC_008261.1 identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1049165 4201217 CPF_0882 Clostridium perfringens ATCC 13124 MutT/NUDIX NTP pyrophosphatase YP_695331.1 1048515 D 195103 CDS YP_695332.1 110799209 4201213 1049256..1049675 1 NC_008261.1 identified by similarity to GB:AAP10150.1; hypothetical protein 1049675 4201213 CPF_0883 Clostridium perfringens ATCC 13124 hypothetical protein YP_695332.1 1049256 D 195103 CDS YP_695333.1 110799826 4203724 1050043..1050669 1 NC_008261.1 DedA family protein 1050669 4203724 CPF_0884 Clostridium perfringens ATCC 13124 DedA family protein YP_695333.1 1050043 D 195103 CDS YP_695334.1 110799615 4201489 1050937..1052067 1 NC_008261.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 1052067 4201489 CPF_0885 Clostridium perfringens ATCC 13124 alcohol dehydrogenase YP_695334.1 1050937 D 195103 CDS YP_695335.1 110801251 4203328 1052421..1052771 1 NC_008261.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS 1052771 eutS 4203328 eutS Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutS YP_695335.1 1052421 D 195103 CDS YP_695336.1 110800439 4203819 1052775..1053209 1 NC_008261.1 identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 1053209 eutP 4203819 eutP Clostridium perfringens ATCC 13124 ethanolamine utilization protein, EutP YP_695336.1 1052775 D 195103 CDS YP_695337.1 110800556 4201426 1053227..1053802 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator 1053802 4201426 CPF_0888 Clostridium perfringens ATCC 13124 response regulator YP_695337.1 1053227 D 195103 CDS YP_695338.1 110799788 4202654 1053806..1055233 1 NC_008261.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07568; sensor histidine kinase 1055233 4202654 CPF_0889 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695338.1 1053806 D 195103 CDS YP_695339.1 110798643 4202691 1055449..1056882 1 NC_008261.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 1056882 eutA 4202691 eutA Clostridium perfringens ATCC 13124 reactivating factor for ethanolamine ammonia lyase YP_695339.1 1055449 D 195103 CDS YP_695340.1 110801427 4203023 1056901..1058268 1 NC_008261.1 identified by similarity to SP:P19635; match to protein family HMM PF06751; ethanolamine ammonia-lyase, large subunit 1058268 4203023 CPF_0891 Clostridium perfringens ATCC 13124 ethanolamine ammonia-lyase, large subunit YP_695340.1 1056901 D 195103 CDS YP_695341.1 110799093 4202813 1058285..1059172 1 NC_008261.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1059172 4202813 CPF_0892 Clostridium perfringens ATCC 13124 ethanolamine ammonia-lyase small subunit YP_695341.1 1058285 D 195103 CDS YP_695342.1 110801147 4201007 1059194..1059847 1 NC_008261.1 identified by similarity to SP:Q9ZFU9; match to protein family HMM PF00936; ethanolamine utilization protein EutL 1059847 eutL 4201007 eutL Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutL YP_695342.1 1059194 D 195103 CDS YP_695343.1 110800071 4203778 1059860..1060624 1 NC_008261.1 identified by similarity to GB:AAL94295.1; match to protein family HMM PF00936; ethanolamine utilization protein 1060624 4203778 CPF_0894 Clostridium perfringens ATCC 13124 ethanolamine utilization protein YP_695343.1 1059860 D 195103 CDS YP_695344.1 110799892 4203908 1060624..1062102 1 NC_008261.1 identified by similarity to GB:AAO36662.1; match to protein family HMM PF00171; match to protein family HMM TIGR02518; ethanolamine utilization protein 1062102 4203908 CPF_0895 Clostridium perfringens ATCC 13124 ethanolamine utilization protein YP_695344.1 1060624 D 195103 CDS YP_695345.1 110800197 4202974 1062457..1062747 1 NC_008261.1 identified by similarity to SP:P41791; match to protein family HMM PF00936; ethanolamine utilization protein EutM 1062747 eutM 4202974 eutM Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutM YP_695345.1 1062457 D 195103 CDS YP_695346.1 110798601 4201246 1062825..1063601 1 NC_008261.1 identified by similarity to GB:AAL21361.1; match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase 1063601 eutT 4201246 eutT Clostridium perfringens ATCC 13124 ethanolamine utilization cobalamin adenosyltransferase YP_695346.1 1062825 D 195103 CDS YP_695347.1 110799625 4201499 1063611..1064246 1 NC_008261.1 identified by match to protein family HMM PF06130; ethanolamine utilization protein 1064246 4201499 CPF_0898 Clostridium perfringens ATCC 13124 ethanolamine utilization protein YP_695347.1 1063611 D 195103 CDS YP_695348.1 110800893 4202798 1064475..1065212 1 NC_008261.1 identified by similarity to GB:AAO36658.1; match to protein family HMM TIGR02536; ethanolamine utilization protein 1065212 4202798 CPF_0899 Clostridium perfringens ATCC 13124 ethanolamine utilization protein YP_695348.1 1064475 D 195103 CDS YP_695349.1 110800632 4202262 1065359..1065631 1 NC_008261.1 identified by similarity to SP:P41792; match to protein family HMM PF03319; ethanolamine utilization protein EutN 1065631 4202262 CPF_0900 Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutN YP_695349.1 1065359 D 195103 CDS YP_695350.1 110801029 4201941 1065633..1066187 1 NC_008261.1 identified by similarity to GB:AAO36657.1; match to protein family HMM PF00936; match to protein family HMM TIGR02526; ethanolamine utilization protein 1066187 4201941 CPF_0901 Clostridium perfringens ATCC 13124 ethanolamine utilization protein YP_695350.1 1065633 D 195103 CDS YP_695351.1 110798844 4201472 1066238..1067335 1 NC_008261.1 identified by similarity to SP:P41796; match to protein family HMM PF04346; ethanolamine utilization protein EutH 1067335 4201472 CPF_0902 Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutH YP_695351.1 1066238 D 195103 CDS YP_695352.1 110799460 4201330 1067338..1067811 1 NC_008261.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ 1067811 4201330 CPF_0903 Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutQ YP_695352.1 1067338 D 195103 CDS YP_695353.1 110800173 4203667 1068180..1068656 1 NC_008261.1 identified by match to protein family HMM PF00255; glutathione peroxidase 1068656 4203667 CPF_0904 Clostridium perfringens ATCC 13124 glutathione peroxidase YP_695353.1 1068180 D 195103 CDS YP_695354.1 110800178 4203672 1069088..1069633 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1069633 4203672 CPF_0905 Clostridium perfringens ATCC 13124 acetyltransferase YP_695354.1 1069088 D 195103 CDS YP_695355.1 110799576 4202673 1069925..1070236 1 NC_008261.1 identified by similarity to GB:AAK80174.1; hypothetical protein 1070236 4202673 CPF_0906 Clostridium perfringens ATCC 13124 hypothetical protein YP_695355.1 1069925 D 195103 CDS YP_695356.1 110801098 4202867 1070325..1070456 1 NC_008261.1 hypothetical protein 1070456 4202867 CPF_0907 Clostridium perfringens ATCC 13124 hypothetical protein YP_695356.1 1070325 D 195103 CDS YP_695357.1 110800502 4203357 1070550..1072190 1 NC_008261.1 identified by match to protein family HMM PF00563; diguanylate phosphodiesterase 1072190 4203357 CPF_0908 Clostridium perfringens ATCC 13124 diguanylate phosphodiesterase YP_695357.1 1070550 D 195103 CDS YP_695358.1 110799763 4203661 1072272..1072892 1 NC_008261.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1072892 4203661 CPF_0909 Clostridium perfringens ATCC 13124 NADPH-dependent FMN reductase YP_695358.1 1072272 D 195103 CDS YP_695359.1 110799171 4202911 1073139..1074983 1 NC_008261.1 identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein 1074983 4202911 CPF_0910 Clostridium perfringens ATCC 13124 capsular polysaccharide biosynthesis protein YP_695359.1 1073139 D 195103 CDS YP_695360.1 110799050 4201306 1075096..1076289 1 NC_008261.1 identified by similarity to GB:AAD45657.1; match to protein family HMM PF01041; aminotransferase 1076289 4201306 CPF_0911 Clostridium perfringens ATCC 13124 aminotransferase YP_695360.1 1075096 D 195103 CDS YP_695361.1 110799422 4202537 1076295..1076897 1 NC_008261.1 identified by similarity to GB:AAG17415.1; match to protein family HMM PF02397; sugar transferase 1076897 4202537 CPF_0912 Clostridium perfringens ATCC 13124 sugar transferase YP_695361.1 1076295 D 195103 CDS YP_695362.1 110800604 4203578 1076920..1077945 1 NC_008261.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1077945 4203578 CPF_0913 Clostridium perfringens ATCC 13124 glycosyl transferase family protein YP_695362.1 1076920 D 195103 CDS YP_695363.1 110800082 4202446 1077932..1079059 1 NC_008261.1 identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein 1079059 4202446 CPF_0914 Clostridium perfringens ATCC 13124 capsular polysaccharide biosynthesis protein YP_695363.1 1077932 D 195103 CDS YP_695364.1 110800868 4203862 1079063..1080139 1 NC_008261.1 identified by similarity to GB:AAM94575.1; polysaccharide polymerase 1080139 4203862 CPF_0915 Clostridium perfringens ATCC 13124 polysaccharide polymerase YP_695364.1 1079063 D 195103 CDS YP_695365.1 110799609 4203409 1080176..1081549 1 NC_008261.1 identified by similarity to GB:AAC78672.1; capsular polysaccharide transporter protein 1081549 4203409 CPF_0916 Clostridium perfringens ATCC 13124 capsular polysaccharide transporter protein YP_695365.1 1080176 D 195103 CDS YP_695366.1 110800391 4201823 1081573..1082385 1 NC_008261.1 identified by similarity to GB:AAD37094.1; match to protein family HMM PF04991; licD family protein 1082385 4201823 CPF_0917 Clostridium perfringens ATCC 13124 licD family protein YP_695366.1 1081573 D 195103 CDS YP_695367.1 110801211 4203132 1082401..1083114 1 NC_008261.1 identified by match to protein family HMM PF02706; capsule chain length determinant protein 1083114 4203132 CPF_0918 Clostridium perfringens ATCC 13124 capsule chain length determinant protein YP_695367.1 1082401 D 195103 CDS YP_695368.1 110799219 4201224 1083114..1083731 1 NC_008261.1 identified by similarity to SP:P39851; tyrosine-protein kinase 1083731 4201224 CPF_0919 Clostridium perfringens ATCC 13124 tyrosine-protein kinase YP_695368.1 1083114 D 195103 CDS YP_695369.1 110800061 4203768 1083893..1084318 1 NC_008261.1 hypothetical protein 1084318 4203768 CPF_0920 Clostridium perfringens ATCC 13124 hypothetical protein YP_695369.1 1083893 D 195103 CDS YP_695370.1 110799946 4203786 1084498..1084986 1 NC_008261.1 identified by similarity to GB:AAP08085.1; hypothetical protein 1084986 4203786 CPF_0921 Clostridium perfringens ATCC 13124 hypothetical protein YP_695370.1 1084498 D 195103 CDS YP_695371.1 110799135 4200966 1085226..1087037 1 NC_008261.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1087037 nrdD 4200966 nrdD Clostridium perfringens ATCC 13124 anaerobic ribonucleoside triphosphate reductase YP_695371.1 1085226 D 195103 CDS YP_695372.1 110798816 4201792 1087034..1087492 1 NC_008261.1 identified by similarity to GB:BAB72688.1; hypothetical protein 1087492 4201792 CPF_0923 Clostridium perfringens ATCC 13124 hypothetical protein YP_695372.1 1087034 D 195103 CDS YP_695373.1 110800067 4203774 1087687..1088409 1 NC_008261.1 hypothetical protein 1088409 4203774 CPF_0924 Clostridium perfringens ATCC 13124 hypothetical protein YP_695373.1 1087687 D 195103 CDS YP_695374.1 110798565 4202711 complement(1088615..1088833) 1 NC_008261.1 identified by similarity to GB:AAS39698.1; hypothetical protein 1088833 4202711 CPF_0925 Clostridium perfringens ATCC 13124 hypothetical protein YP_695374.1 1088615 R 195103 CDS YP_695375.1 110800856 4201278 complement(1089077..1090141) 1 NC_008261.1 identified by similarity to GB:AAF12706.1; match to protein family HMM PF00589; phage integrase site specific recombinase 1090141 4201278 CPF_0926 Clostridium perfringens ATCC 13124 phage integrase site specific recombinase YP_695375.1 1089077 R 195103 CDS YP_695376.1 110800690 4202533 complement(1090234..1090698) 1 NC_008261.1 identified by similarity to GB:AAL96793.1; match to protein family HMM PF06114; hypothetical protein 1090698 4202533 CPF_0927 Clostridium perfringens ATCC 13124 hypothetical protein YP_695376.1 1090234 R 195103 CDS YP_695377.1 110800946 4203335 complement(1090714..1091217) 1 NC_008261.1 identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381; Cro/CI family transcriptional regulator 1091217 4203335 CPF_0928 Clostridium perfringens ATCC 13124 Cro/CI family transcriptional regulator YP_695377.1 1090714 R 195103 CDS YP_695378.1 110801326 4201927 1091369..1091605 1 NC_008261.1 identified by similarity to GB:AAD44066.1; hypothetical protein 1091605 4201927 CPF_0929 Clostridium perfringens ATCC 13124 hypothetical protein YP_695378.1 1091369 D 195103 CDS YP_695379.1 110799301 4202631 1091617..1092348 1 NC_008261.1 identified by match to protein family HMM PF02498; BRO domain-containing protein 1092348 4202631 CPF_0930 Clostridium perfringens ATCC 13124 BRO domain-containing protein YP_695379.1 1091617 D 195103 CDS YP_695380.1 110800125 4203892 1092374..1092628 1 NC_008261.1 identified by similarity to GB:AAN36269.1; hypothetical protein 1092628 4203892 CPF_0932 Clostridium perfringens ATCC 13124 hypothetical protein YP_695380.1 1092374 D 195103 CDS YP_695381.1 110800741 4201418 complement(1092597..1093286) 1 NC_008261.1 hypothetical protein 1093286 4201418 CPF_0931 Clostridium perfringens ATCC 13124 hypothetical protein YP_695381.1 1092597 R 195103 CDS YP_695382.1 110798877 4203412 1093445..1093747 1 NC_008261.1 hypothetical protein 1093747 4203412 CPF_0933 Clostridium perfringens ATCC 13124 hypothetical protein YP_695382.1 1093445 D 195103 CDS YP_695383.1 110799580 4202677 1093749..1093928 1 NC_008261.1 identified by similarity to GB:AAL96798.1; hypothetical protein 1093928 4202677 CPF_0934 Clostridium perfringens ATCC 13124 hypothetical protein YP_695383.1 1093749 D 195103 CDS YP_695384.1 110800608 4203582 1093939..1094121 1 NC_008261.1 hypothetical protein 1094121 4203582 CPF_0935 Clostridium perfringens ATCC 13124 hypothetical protein YP_695384.1 1093939 D 195103 CDS YP_695385.1 110800657 4201701 1094210..1094374 1 NC_008261.1 hypothetical protein 1094374 4201701 CPF_0936 Clostridium perfringens ATCC 13124 hypothetical protein YP_695385.1 1094210 D 195103 CDS YP_695386.1 110800927 4202110 1094418..1094603 1 NC_008261.1 hypothetical protein 1094603 4202110 CPF_0937 Clostridium perfringens ATCC 13124 hypothetical protein YP_695386.1 1094418 D 195103 CDS YP_695387.1 110800330 4202094 1094603..1095514 1 NC_008261.1 identified by similarity to GB:CAB53837.1; hypothetical protein 1095514 4202094 CPF_0938 Clostridium perfringens ATCC 13124 hypothetical protein YP_695387.1 1094603 D 195103 CDS YP_695388.1 110800960 4203349 1095516..1096385 1 NC_008261.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; RecT family protein 1096385 4203349 CPF_0939 Clostridium perfringens ATCC 13124 RecT family protein YP_695388.1 1095516 D 195103 CDS YP_695389.1 110799066 4202569 1096403..1097116 1 NC_008261.1 identified by similarity to GB:CAB53839.1; hypothetical protein 1097116 4202569 CPF_0940 Clostridium perfringens ATCC 13124 hypothetical protein YP_695389.1 1096403 D 195103 CDS YP_695390.1 110799669 4201716 1097117..1097290 1 NC_008261.1 hypothetical protein 1097290 4201716 CPF_0941 Clostridium perfringens ATCC 13124 hypothetical protein YP_695390.1 1097117 D 195103 CDS YP_695391.1 110800661 4201705 1097284..1097670 1 NC_008261.1 identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 1097670 4201705 CPF_0942 Clostridium perfringens ATCC 13124 endodeoxyribonuclease RusA YP_695391.1 1097284 D 195103 CDS YP_695392.1 110801285 4201592 1097820..1098467 1 NC_008261.1 hypothetical protein 1098467 4201592 CPF_0943 Clostridium perfringens ATCC 13124 hypothetical protein YP_695392.1 1097820 D 195103 CDS YP_695393.1 110800734 4201410 1099026..1099499 1 NC_008261.1 identified by similarity to GB:AAO35665.1; hypothetical protein 1099499 4201410 CPF_0945 Clostridium perfringens ATCC 13124 hypothetical protein YP_695393.1 1099026 D 195103 CDS YP_695394.1 110798860 4201138 1099982..1101157 1 NC_008261.1 identified by similarity to GB:AAK03168.1; hypothetical protein 1101157 4201138 CPF_0947 Clostridium perfringens ATCC 13124 hypothetical protein YP_695394.1 1099982 D 195103 CDS YP_695395.1 110801082 4202851 1101226..1101693 1 NC_008261.1 identified by similarity to SP:Q38627; match to protein family HMM PF03592; phage terminase small subunit 1101693 4202851 CPF_0948 Clostridium perfringens ATCC 13124 phage terminase small subunit YP_695395.1 1101226 D 195103 CDS YP_695396.1 110801301 4201902 1101686..1103050 1 NC_008261.1 phage terminase, large subunit 1103050 4201902 CPF_0949 Clostridium perfringens ATCC 13124 phage terminase, large subunit YP_695396.1 1101686 D 195103 CDS YP_695397.1 110800665 4201709 1103064..1103873 1 NC_008261.1 hypothetical protein 1103873 4201709 CPF_0950 Clostridium perfringens ATCC 13124 hypothetical protein YP_695397.1 1103064 D 195103 CDS YP_695398.1 110801358 4203242 1103937..1105439 1 NC_008261.1 phage minor capsid protein 1105439 4203242 CPF_0951 Clostridium perfringens ATCC 13124 phage minor capsid protein YP_695398.1 1103937 D 195103 CDS YP_695399.1 110800038 4203705 1105423..1107060 1 NC_008261.1 phage minor capsid protein 1107060 4203705 CPF_0952 Clostridium perfringens ATCC 13124 phage minor capsid protein YP_695399.1 1105423 D 195103 CDS YP_695400.1 110799382 4203257 1107073..1107297 1 NC_008261.1 hypothetical protein 1107297 4203257 CPF_0953 Clostridium perfringens ATCC 13124 hypothetical protein YP_695400.1 1107073 D 195103 CDS YP_695401.1 110798762 4201878 1107325..1107942 1 NC_008261.1 identified by similarity to GB:AAN67551.1; hypothetical protein 1107942 4201878 CPF_0954 Clostridium perfringens ATCC 13124 hypothetical protein YP_695401.1 1107325 D 195103 CDS YP_695402.1 110801001 4201676 1108036..1108641 1 NC_008261.1 identified by similarity to GB:BAC63730.1; hypothetical protein 1108641 4201676 CPF_0955 Clostridium perfringens ATCC 13124 hypothetical protein YP_695402.1 1108036 D 195103 CDS YP_695403.1 110800331 4202095 1108666..1109571 1 NC_008261.1 identified by similarity to GB:AAA56848.1; phage major capsid protein 1109571 4202095 CPF_0956 Clostridium perfringens ATCC 13124 phage major capsid protein YP_695403.1 1108666 D 195103 CDS YP_695404.1 110800517 4201173 1109586..1109855 1 NC_008261.1 hypothetical protein 1109855 4201173 CPF_0957 Clostridium perfringens ATCC 13124 hypothetical protein YP_695404.1 1109586 D 195103 CDS YP_695405.1 110800132 4203529 1109891..1110253 1 NC_008261.1 identified by similarity to GB:CAB53794.1; hypothetical protein 1110253 4203529 CPF_0958 Clostridium perfringens ATCC 13124 hypothetical protein YP_695405.1 1109891 D 195103 CDS YP_695406.1 110799279 4203075 1110257..1110583 1 NC_008261.1 hypothetical protein 1110583 4203075 CPF_0959 Clostridium perfringens ATCC 13124 hypothetical protein YP_695406.1 1110257 D 195103 CDS YP_695407.1 110799887 4203903 1110583..1110966 1 NC_008261.1 hypothetical protein 1110966 4203903 CPF_0960 Clostridium perfringens ATCC 13124 hypothetical protein YP_695407.1 1110583 D 195103 CDS YP_695408.1 110800205 4202982 1110966..1111352 1 NC_008261.1 hypothetical protein 1111352 4202982 CPF_0961 Clostridium perfringens ATCC 13124 hypothetical protein YP_695408.1 1110966 D 195103 CDS YP_695409.1 110801176 4201036 1111362..1111820 1 NC_008261.1 identified by similarity to PIR:AD1730; hypothetical protein 1111820 4201036 CPF_0962 Clostridium perfringens ATCC 13124 hypothetical protein YP_695409.1 1111362 D 195103 CDS YP_695410.1 110798609 4202736 1111833..1112201 1 NC_008261.1 hypothetical protein 1112201 4202736 CPF_0963 Clostridium perfringens ATCC 13124 hypothetical protein YP_695410.1 1111833 D 195103 CDS YP_695411.1 110799622 4201496 1112290..1112523 1 NC_008261.1 hypothetical protein 1112523 4201496 CPF_0964 Clostridium perfringens ATCC 13124 hypothetical protein YP_695411.1 1112290 D 195103 CDS YP_695412.1 110799867 4202989 1112564..1115776 1 NC_008261.1 identified by similarity to GB:AAL96783.1; hypothetical protein 1115776 4202989 CPF_0965 Clostridium perfringens ATCC 13124 hypothetical protein YP_695412.1 1112564 D 195103 CDS YP_695413.1 110800900 4202805 1115780..1116133 1 NC_008261.1 identified by similarity to GB:AAK27910.2; hypothetical protein 1116133 4202805 CPF_0966 Clostridium perfringens ATCC 13124 hypothetical protein YP_695413.1 1115780 D 195103 CDS YP_695414.1 110799413 4201167 1116156..1116422 1 NC_008261.1 identified by similarity to PIR:B97132; hypothetical protein 1116422 4201167 CPF_0967 Clostridium perfringens ATCC 13124 hypothetical protein YP_695414.1 1116156 D 195103 CDS YP_695415.1 110800248 4201835 1116489..1116869 1 NC_008261.1 identified by similarity to PIR:A97132; hypothetical protein 1116869 4201835 CPF_0968 Clostridium perfringens ATCC 13124 hypothetical protein YP_695415.1 1116489 D 195103 CDS YP_695416.1 110801433 4203029 1116905..1122013 1 NC_008261.1 KID repeat-containing protein 1122013 4203029 CPF_0969 Clostridium perfringens ATCC 13124 KID repeat-containing protein YP_695416.1 1116905 D 195103 CDS YP_695417.1 110799211 4201215 1122032..1122280 1 NC_008261.1 identified by similarity to GB:AAL96787.1; hypothetical protein 1122280 4201215 CPF_0970 Clostridium perfringens ATCC 13124 hypothetical protein YP_695417.1 1122032 D 195103 CDS YP_695418.1 110801339 4203222 1122294..1122710 1 NC_008261.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; toxin secretion/phage lysis holin 1122710 4203222 CPF_0971 Clostridium perfringens ATCC 13124 toxin secretion/phage lysis holin YP_695418.1 1122294 D 195103 CDS YP_695419.1 110798676 4202315 1122751..1123167 1 NC_008261.1 identified by similarity to GB:BAA29564.1; hypothetical protein 1123167 4202315 CPF_0972 Clostridium perfringens ATCC 13124 hypothetical protein YP_695419.1 1122751 D 195103 CDS YP_695420.1 110799675 4201722 1123253..1124281 1 NC_008261.1 identified by match to protein family HMM PF01183; glycosyl hydrolase 1124281 4201722 CPF_0973 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695420.1 1123253 D 195103 CDS YP_695421.1 110800694 4203823 1124699..1125361 1 NC_008261.1 hypothetical protein 1125361 4203823 CPF_0974 Clostridium perfringens ATCC 13124 hypothetical protein YP_695421.1 1124699 D 195103 CDS YP_695422.1 110800470 4201553 1125585..1126673 1 NC_008261.1 identified by similarity to GB:AAO35693.1; hypothetical protein 1126673 4201553 CPF_0975 Clostridium perfringens ATCC 13124 hypothetical protein YP_695422.1 1125585 D 195103 CDS YP_695423.1 110801139 4200999 1126678..1126959 1 NC_008261.1 hypothetical protein 1126959 4200999 CPF_0976 Clostridium perfringens ATCC 13124 hypothetical protein YP_695423.1 1126678 D 195103 CDS YP_695424.1 110799318 4203154 1126966..1127691 1 NC_008261.1 identified by similarity to GB:AAO35694.1; hypothetical protein 1127691 4203154 CPF_0977 Clostridium perfringens ATCC 13124 hypothetical protein YP_695424.1 1126966 D 195103 CDS YP_695425.1 110799981 4201251 complement(1128751..1129536) 1 NC_008261.1 identified by match to protein family HMM PF01048; phosphorylase 1129536 4201251 CPF_0978 Clostridium perfringens ATCC 13124 phosphorylase YP_695425.1 1128751 R 195103 CDS YP_695426.1 110801325 4201926 1129893..1130990 1 NC_008261.1 hypothetical protein 1130990 4201926 CPF_0979 Clostridium perfringens ATCC 13124 hypothetical protein YP_695426.1 1129893 D 195103 CDS YP_695427.1 110800723 4202470 1131187..1131705 1 NC_008261.1 identified by similarity to GB:AAK75063.1; match to protein family HMM PF08020; hypothetical protein 1131705 4202470 CPF_0980 Clostridium perfringens ATCC 13124 hypothetical protein YP_695427.1 1131187 D 195103 CDS YP_695428.1 110799782 4203525 1131742..1132584 1 NC_008261.1 identified by similarity to GB:CAA15293.1; hypothetical protein 1132584 4203525 CPF_0981 Clostridium perfringens ATCC 13124 hypothetical protein YP_695428.1 1131742 D 195103 CDS YP_695429.1 110800963 4202282 1132601..1132915 1 NC_008261.1 identified by similarity to GB:BAD66218.1; hypothetical protein 1132915 4202282 CPF_0982 Clostridium perfringens ATCC 13124 hypothetical protein YP_695429.1 1132601 D 195103 CDS YP_695430.1 110800001 4203843 complement(1133107..1133844) 1 NC_008261.1 identified by similarity to GB:AAB99318.1; match to protein family HMM PF01261; hypothetical protein 1133844 4203843 CPF_0983 Clostridium perfringens ATCC 13124 hypothetical protein YP_695430.1 1133107 R 195103 CDS YP_695431.1 110798750 4200951 1134211..1134957 1 NC_008261.1 hypothetical protein 1134957 4200951 CPF_0984 Clostridium perfringens ATCC 13124 hypothetical protein YP_695431.1 1134211 D 195103 CDS YP_695432.1 110800384 4201816 complement(1135175..1136323) 1 NC_008261.1 identified by similarity to SP:P10481; match to protein family HMM PF02012; sialidase 1136323 4201816 CPF_0985 Clostridium perfringens ATCC 13124 sialidase YP_695432.1 1135175 R 195103 CDS YP_695433.1 110801113 4203288 1137105..1138484 1 NC_008261.1 identified by similarity to SP:Q56106; fliB domain-containing protein 1138484 4203288 CPF_0986 Clostridium perfringens ATCC 13124 fliB domain-containing protein YP_695433.1 1137105 D 195103 CDS YP_695434.1 110800973 4202292 complement(1138908..1139201) 1 NC_008261.1 identified by similarity to GB:AAM86130.1; hypothetical protein 1139201 4202292 CPF_0987 Clostridium perfringens ATCC 13124 hypothetical protein YP_695434.1 1138908 R 195103 CDS YP_695435.1 110800147 4203544 complement(1139592..1140413) 1 NC_008261.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1140413 4203544 CPF_0988 Clostridium perfringens ATCC 13124 CAAX amino terminal protease YP_695435.1 1139592 R 195103 CDS YP_695436.1 110798564 4201874 1141378..1141770 1 NC_008261.1 identified by similarity to PIR:A97215; hypothetical protein 1141770 4201874 CPF_0989 Clostridium perfringens ATCC 13124 hypothetical protein YP_695436.1 1141378 D 195103 CDS YP_695437.1 110800825 4201095 1142100..1143245 1 NC_008261.1 hypothetical protein 1143245 4201095 CPF_0990 Clostridium perfringens ATCC 13124 hypothetical protein YP_695437.1 1142100 D 195103 CDS YP_695438.1 110800555 4202907 1143387..1143713 1 NC_008261.1 hypothetical protein 1143713 4202907 CPF_0991 Clostridium perfringens ATCC 13124 hypothetical protein YP_695438.1 1143387 D 195103 CDS YP_695439.1 110799098 4202818 1143881..1145644 1 NC_008261.1 identified by match to protein family HMM PF07728; McrB domain-containing protein 1145644 4202818 CPF_0992 Clostridium perfringens ATCC 13124 McrB domain-containing protein YP_695439.1 1143881 D 195103 CDS YP_695440.1 110801259 4201565 1145648..1146961 1 NC_008261.1 identified by similarity to PIR:D81431; hypothetical protein 1146961 4201565 CPF_0993 Clostridium perfringens ATCC 13124 hypothetical protein YP_695440.1 1145648 D 195103 CDS YP_695441.1 110800419 4202048 1146987..1147370 1 NC_008261.1 hypothetical protein 1147370 4202048 CPF_0994 Clostridium perfringens ATCC 13124 hypothetical protein YP_695441.1 1146987 D 195103 CDS YP_695442.1 110799442 4201526 complement(1147461..1148018) 1 NC_008261.1 identified by similarity to SP:O28488; hypothetical protein 1148018 4201526 CPF_0995 Clostridium perfringens ATCC 13124 hypothetical protein YP_695442.1 1147461 R 195103 CDS YP_695443.1 110800304 4202146 complement(1148063..1148452) 1 NC_008261.1 hypothetical protein 1148452 4202146 CPF_0996 Clostridium perfringens ATCC 13124 hypothetical protein YP_695443.1 1148063 R 195103 CDS YP_695444.1 110798657 4202705 1148755..1149531 1 NC_008261.1 lipoprotein 1149531 4202705 CPF_0997 Clostridium perfringens ATCC 13124 lipoprotein YP_695444.1 1148755 D 195103 CDS YP_695445.1 110799316 4203152 complement(1149913..1150716) 1 NC_008261.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1150716 4203152 CPF_0998 Clostridium perfringens ATCC 13124 CAAX amino terminal protease YP_695445.1 1149913 R 195103 CDS YP_695446.1 110801136 4201637 1151418..1151609 1 NC_008261.1 hypothetical protein 1151609 4201637 CPF_1000 Clostridium perfringens ATCC 13124 hypothetical protein YP_695446.1 1151418 D 195103 CDS YP_695447.1 110799240 4201809 1151594..1151818 1 NC_008261.1 hypothetical protein 1151818 4201809 CPF_1001 Clostridium perfringens ATCC 13124 hypothetical protein YP_695447.1 1151594 D 195103 CDS YP_695448.1 110799528 4203190 complement(1152107..1153333) 1 NC_008261.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1153333 4203190 CPF_1002 Clostridium perfringens ATCC 13124 amidohydrolase YP_695448.1 1152107 R 195103 CDS YP_695449.1 110798917 4200981 1153742..1154620 1 NC_008261.1 identified by similarity to PIR:E71620; hypothetical protein 1154620 4200981 CPF_1003 Clostridium perfringens ATCC 13124 hypothetical protein YP_695449.1 1153742 D 195103 CDS YP_695450.1 110799532 4203194 1154922..1155041 1 NC_008261.1 hypothetical protein 1155041 4203194 CPF_1004 Clostridium perfringens ATCC 13124 hypothetical protein YP_695450.1 1154922 D 195103 CDS YP_695451.1 110800003 4203845 complement(1155215..1156168) 1 NC_008261.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1156168 fmt 4203845 fmt Clostridium perfringens ATCC 13124 methionyl-tRNA formyltransferase YP_695451.1 1155215 R 195103 CDS YP_695452.1 110799119 4203049 complement(1156381..1157175) 1 NC_008261.1 identified by similarity to PIR:D90881; match to protein family HMM PF02698; hypothetical protein 1157175 4203049 CPF_1006 Clostridium perfringens ATCC 13124 hypothetical protein YP_695452.1 1156381 R 195103 CDS YP_695453.1 110799895 4203911 complement(1157270..1157641) 1 NC_008261.1 hypothetical protein 1157641 4203911 CPF_1007 Clostridium perfringens ATCC 13124 hypothetical protein YP_695453.1 1157270 R 195103 CDS YP_695454.1 110800383 4201815 1158231..1159394 1 NC_008261.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB 1159394 4201815 CPF_1008 Clostridium perfringens ATCC 13124 IS605 family transposase OrfB YP_695454.1 1158231 D 195103 CDS YP_695455.1 110798862 4201140 complement(1160156..1162279) 1 NC_008261.1 identified by similarity to SP:P33650; match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; ferrous iron transport protein B 1162279 feoB 4201140 feoB Clostridium perfringens ATCC 13124 ferrous iron transport protein B YP_695455.1 1160156 R 195103 CDS YP_695456.1 110799585 4202683 complement(1162297..1162515) 1 NC_008261.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 1162515 feoA 4202683 feoA Clostridium perfringens ATCC 13124 ferrous iron transport protein A YP_695456.1 1162297 R 195103 CDS YP_695457.1 110800046 4203714 1162940..1163290 1 NC_008261.1 identified by similarity to GB:AAS43373.1; hypothetical protein 1163290 4203714 CPF_1011 Clostridium perfringens ATCC 13124 hypothetical protein YP_695457.1 1162940 D 195103 CDS YP_695458.1 110798932 4200996 1163290..1164111 1 NC_008261.1 hypothetical protein 1164111 4200996 CPF_1012 Clostridium perfringens ATCC 13124 hypothetical protein YP_695458.1 1163290 D 195103 CDS YP_695459.1 110801426 4203022 1164131..1164424 1 NC_008261.1 identified by similarity to GB:AAP27270.1; hypothetical protein 1164424 4203022 CPF_1013 Clostridium perfringens ATCC 13124 hypothetical protein YP_695459.1 1164131 D 195103 CDS YP_695460.1 110799504 4202057 1164914..1166227 1 NC_008261.1 hypothetical protein 1166227 4202057 CPF_1014 Clostridium perfringens ATCC 13124 hypothetical protein YP_695460.1 1164914 D 195103 CDS YP_695461.1 110798989 4201112 complement(1166292..1166957) 1 NC_008261.1 hypothetical protein 1166957 4201112 CPF_1015 Clostridium perfringens ATCC 13124 hypothetical protein YP_695461.1 1166292 R 195103 CDS YP_695462.1 110800750 4201602 complement(1166971..1168458) 1 NC_008261.1 Possibly an isoschizomer of MboI found in Moraxella bovis.; identified by match to protein family HMM PF02976; type II restriction endonuclease 1168458 4201602 CPF_1016 Clostridium perfringens ATCC 13124 type II restriction endonuclease YP_695462.1 1166971 R 195103 CDS YP_695463.1 110800293 4202877 1168761..1169984 1 NC_008261.1 identified by similarity to GB:AAC98421.1; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 1169984 dcm 4202877 dcm Clostridium perfringens ATCC 13124 DNA-cytosine methyltransferase YP_695463.1 1168761 D 195103 CDS YP_695464.1 110799652 4202576 1170044..1171384 1 NC_008261.1 identified by similarity to SP:P20589; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 1171384 dcm 4202576 dcm Clostridium perfringens ATCC 13124 DNA-cytosine methyltransferase YP_695464.1 1170044 D 195103 CDS YP_695465.1 110798821 4202480 complement(1171434..1171916) 1 NC_008261.1 hypothetical protein 1171916 4202480 CPF_1019 Clostridium perfringens ATCC 13124 hypothetical protein YP_695465.1 1171434 R 195103 CDS YP_695466.1 110801314 4201915 complement(1172294..1172719) 1 NC_008261.1 identified by similarity to SP:P10426; match to protein family HMM PF06114; hypothetical protein 1172719 4201915 CPF_1020 Clostridium perfringens ATCC 13124 hypothetical protein YP_695466.1 1172294 R 195103 CDS YP_695467.1 110800489 4201964 complement(1172854..1173396) 1 NC_008261.1 identified by match to protein family HMM PF01381; DNA-binding protein 1173396 4201964 CPF_1021 Clostridium perfringens ATCC 13124 DNA-binding protein YP_695467.1 1172854 R 195103 CDS YP_695468.1 110801389 4203470 1173694..1174608 1 NC_008261.1 hypothetical protein 1174608 4203470 CPF_1022 Clostridium perfringens ATCC 13124 hypothetical protein YP_695468.1 1173694 D 195103 CDS YP_695469.1 110800390 4201822 1175129..1175359 1 NC_008261.1 hypothetical protein 1175359 4201822 CPF_1023 Clostridium perfringens ATCC 13124 hypothetical protein YP_695469.1 1175129 D 195103 CDS YP_695470.1 110799794 4202660 1175800..1176030 1 NC_008261.1 hypothetical protein 1176030 4202660 CPF_1024 Clostridium perfringens ATCC 13124 hypothetical protein YP_695470.1 1175800 D 195103 CDS YP_695471.1 110799514 4202067 1176353..1177627 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1177627 4202067 CPF_1025 Clostridium perfringens ATCC 13124 acetyltransferase YP_695471.1 1176353 D 195103 CDS YP_695472.1 110800966 4202285 complement(1178112..1178423) 1 NC_008261.1 hypothetical protein 1178423 4202285 CPF_1026 Clostridium perfringens ATCC 13124 hypothetical protein YP_695472.1 1178112 R 195103 CDS YP_695473.1 110800019 4203940 1178726..1179541 1 NC_008261.1 hypothetical protein 1179541 4203940 CPF_1027 Clostridium perfringens ATCC 13124 hypothetical protein YP_695473.1 1178726 D 195103 CDS YP_695474.1 110799410 4201164 complement(1179642..1180868) 1 NC_008261.1 identified by similarity to SP:P02982; match to protein family HMM PF00083; match to protein family HMM PF07690; multidrug resistance protein 1180868 4201164 CPF_1028 Clostridium perfringens ATCC 13124 multidrug resistance protein YP_695474.1 1179642 R 195103 CDS YP_695475.1 110798575 4202721 complement(1181122..1181595) 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1181595 4202721 CPF_1029 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695475.1 1181122 R 195103 CDS YP_695476.1 110800901 4202806 1181874..1182305 1 NC_008261.1 hypothetical protein 1182305 4202806 CPF_1030 Clostridium perfringens ATCC 13124 hypothetical protein YP_695476.1 1181874 D 195103 CDS YP_695477.1 110799730 4203161 complement(1182338..1182733) 1 NC_008261.1 identified by similarity to SP:P08337; match to protein family HMM PF00293; mutator mutT protein 1182733 4203161 CPF_1031 Clostridium perfringens ATCC 13124 mutator mutT protein YP_695477.1 1182338 R 195103 CDS YP_695478.1 110799647 4202513 1183107..1183316 1 NC_008261.1 identified by match to protein family HMM PF01381; DNA-binding protein 1183316 4202513 CPF_1032 Clostridium perfringens ATCC 13124 DNA-binding protein YP_695478.1 1183107 D 195103 CDS YP_695479.1 110800272 4203612 1183309..1183815 1 NC_008261.1 hypothetical protein 1183815 4203612 CPF_1033 Clostridium perfringens ATCC 13124 hypothetical protein YP_695479.1 1183309 D 195103 CDS YP_695480.1 110800935 4202118 1184257..1184709 1 NC_008261.1 identified by match to protein family HMM PF06803; hypothetical protein 1184709 4202118 CPF_1034 Clostridium perfringens ATCC 13124 hypothetical protein YP_695480.1 1184257 D 195103 CDS YP_695481.1 110799411 4201165 1185165..1186094 1 NC_008261.1 lipoprotein 1186094 4201165 CPF_1035 Clostridium perfringens ATCC 13124 lipoprotein YP_695481.1 1185165 D 195103 CDS YP_695482.1 110800156 4203553 1186126..1186515 1 NC_008261.1 hypothetical protein 1186515 4203553 CPF_1036 Clostridium perfringens ATCC 13124 hypothetical protein YP_695482.1 1186126 D 195103 CDS YP_695483.1 110800771 4201757 1186516..1187205 1 NC_008261.1 hypothetical protein 1187205 4201757 CPF_1037 Clostridium perfringens ATCC 13124 hypothetical protein YP_695483.1 1186516 D 195103 CDS YP_695484.1 110801340 4203223 complement(1187379..1187696) 1 NC_008261.1 hypothetical protein 1187696 4203223 CPF_1038 Clostridium perfringens ATCC 13124 hypothetical protein YP_695484.1 1187379 R 195103 CDS YP_695485.1 110800699 4203828 complement(1187903..1188598) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1188598 4203828 CPF_1039 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_695485.1 1187903 R 195103 CDS YP_695486.1 110801131 4201632 complement(1188620..1189324) 1 NC_008261.1 identified by match to protein family HMM PF03483; hypothetical protein 1189324 4201632 CPF_1040 Clostridium perfringens ATCC 13124 hypothetical protein YP_695486.1 1188620 R 195103 CDS YP_695487.1 110798793 4201130 1189698..1190255 1 NC_008261.1 hypothetical protein 1190255 4201130 CPF_1041 Clostridium perfringens ATCC 13124 hypothetical protein YP_695487.1 1189698 D 195103 CDS YP_695488.1 110798969 4201382 1190807..1191157 1 NC_008261.1 hypothetical protein 1191157 4201382 CPF_1042 Clostridium perfringens ATCC 13124 hypothetical protein YP_695488.1 1190807 D 195103 CDS YP_695489.1 110799724 4201208 complement(1191279..1191758) 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 1191758 4201208 CPF_1043 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695489.1 1191279 R 195103 CDS YP_695490.1 110800214 4202933 1192056..1192568 1 NC_008261.1 hypothetical protein 1192568 4202933 CPF_1044 Clostridium perfringens ATCC 13124 hypothetical protein YP_695490.1 1192056 D 195103 CDS YP_695491.1 110801041 4202593 1192556..1193158 1 NC_008261.1 hypothetical protein 1193158 4202593 CPF_1045 Clostridium perfringens ATCC 13124 hypothetical protein YP_695491.1 1192556 D 195103 CDS YP_695492.1 110798613 4202740 1193329..1194477 1 NC_008261.1 identified by similarity to SP:P11549; match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase 1194477 fucO 4202740 fucO Clostridium perfringens ATCC 13124 L-1,2-propanediol oxidoreductase YP_695492.1 1193329 D 195103 CDS YP_695493.1 110799496 4202049 complement(1194534..1195391) 1 NC_008261.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1195391 4202049 CPF_1047 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695493.1 1194534 R 195103 CDS YP_695494.1 110800239 4202763 1195542..1197335 1 NC_008261.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 1197335 fucI 4202763 fucI Clostridium perfringens ATCC 13124 L-fucose isomerase YP_695494.1 1195542 D 195103 CDS YP_695495.1 110800345 4202012 1197356..1198858 1 NC_008261.1 identified by similarity to GB:AAO78868.1; match to protein family HMM PF00370; L-fuculokinase 1198858 fucK 4202012 fucK Clostridium perfringens ATCC 13124 L-fuculokinase YP_695495.1 1197356 D 195103 CDS YP_695496.1 110801351 4203234 1198852..1199289 1 NC_008261.1 identified by similarity to SP:P11555; match to protein family HMM PF05025; fucose operon protein FucU 1199289 fucU 4203234 fucU Clostridium perfringens ATCC 13124 fucose operon protein FucU YP_695496.1 1198852 D 195103 CDS YP_695497.1 110798616 4202743 1199318..1200022 1 NC_008261.1 identified by similarity to SP:P11550; match to protein family HMM PF00596; L-fuculose phosphate aldolase 1200022 fucA 4202743 fucA Clostridium perfringens ATCC 13124 L-fuculose phosphate aldolase YP_695497.1 1199318 D 195103 CDS YP_695498.1 110800204 4202981 1200057..1201391 1 NC_008261.1 identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose permease 1201391 fucP 4202981 fucP Clostridium perfringens ATCC 13124 L-fucose permease YP_695498.1 1200057 D 195103 CDS YP_695499.1 110801073 4201747 1201696..1202742 1 NC_008261.1 identified by match to protein family HMM PF01381; DNA-binding protein 1202742 4201747 CPF_1053 Clostridium perfringens ATCC 13124 DNA-binding protein YP_695499.1 1201696 D 195103 CDS YP_695500.1 110801162 4201022 1202947..1203477 1 NC_008261.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 1203477 4201022 CPF_1054 Clostridium perfringens ATCC 13124 UBA/TS-N domain-containing protein YP_695500.1 1202947 D 195103 CDS YP_695501.1 110799017 4202267 1204006..1204554 1 NC_008261.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 1204554 4202267 CPF_1055 Clostridium perfringens ATCC 13124 UBA/TS-N domain-containing protein YP_695501.1 1204006 D 195103 CDS YP_695502.1 110798695 4202217 1204584..1205264 1 NC_008261.1 identified by similarity to GB:BAB95170.1; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1205264 4202217 CPF_1056 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695502.1 1204584 D 195103 CDS YP_695503.1 110799811 4203689 1205257..1206513 1 NC_008261.1 identified by similarity to PIR:F89918; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1206513 4203689 CPF_1057 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695503.1 1205257 D 195103 CDS YP_695504.1 110800254 4201841 1206647..1207432 1 NC_008261.1 identified by match to protein family HMM PF05116; match to protein family HMM TIGR01484; cof family hydrolase 1207432 4201841 CPF_1058 Clostridium perfringens ATCC 13124 cof family hydrolase YP_695504.1 1206647 D 195103 CDS YP_695505.1 110799807 4203685 complement(1207726..1208283) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1208283 4203685 CPF_1059 Clostridium perfringens ATCC 13124 acetyltransferase YP_695505.1 1207726 R 195103 CDS YP_695506.1 110801430 4203026 complement(1208403..1208894) 1 NC_008261.1 hypothetical protein 1208894 4203026 CPF_1060 Clostridium perfringens ATCC 13124 hypothetical protein YP_695506.1 1208403 R 195103 CDS YP_695507.1 110799436 4202551 1209210..1209668 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1209668 4202551 CPF_1061 Clostridium perfringens ATCC 13124 acetyltransferase YP_695507.1 1209210 D 195103 CDS YP_695508.1 110800182 4203676 complement(1209702..1210151) 1 NC_008261.1 identified by similarity to SP:P32090; match to protein family HMM PF00293; NUDIX family hydrolase 1210151 4203676 CPF_1062 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695508.1 1209702 R 195103 CDS YP_695509.1 110801015 4201360 1210301..1210510 1 NC_008261.1 hypothetical protein 1210510 4201360 CPF_1063 Clostridium perfringens ATCC 13124 hypothetical protein YP_695509.1 1210301 D 195103 CDS YP_695510.1 110801198 4203119 1210835..1212460 1 NC_008261.1 identified by similarity to SP:P32701; match to protein family HMM PF00563; diguanylate phosphodiesterase 1212460 4203119 CPF_1064 Clostridium perfringens ATCC 13124 diguanylate phosphodiesterase YP_695510.1 1210835 D 195103 CDS YP_695511.1 110800921 4203603 1212579..1212926 1 NC_008261.1 hypothetical protein 1212926 4203603 CPF_1065 Clostridium perfringens ATCC 13124 hypothetical protein YP_695511.1 1212579 D 195103 CDS YP_695512.1 110799930 4201454 1213436..1213594 1 NC_008261.1 identified by similarity to PIR:E97064; hypothetical protein 1213594 4201454 CPF_1066 Clostridium perfringens ATCC 13124 hypothetical protein YP_695512.1 1213436 D 195103 CDS YP_695513.1 110798883 4203418 1213607..1213858 1 NC_008261.1 identified by similarity to SP:Q45537; spore coat protein CotJB 1213858 cotJB 4203418 cotJB Clostridium perfringens ATCC 13124 spore coat protein CotJB YP_695513.1 1213607 D 195103 CDS YP_695514.1 110800949 4203338 1213871..1214437 1 NC_008261.1 identified by similarity to SP:Q45538; match to protein family HMM PF05067; spore coat protein CotJC 1214437 cotJC 4203338 cotJC Clostridium perfringens ATCC 13124 spore coat protein CotJC YP_695514.1 1213871 D 195103 CDS YP_695515.1 110801238 4203315 complement(1214613..1214831) 1 NC_008261.1 identified by similarity to GB:AAP26047.1; hypothetical protein 1214831 4203315 CPF_1069 Clostridium perfringens ATCC 13124 hypothetical protein YP_695515.1 1214613 R 195103 CDS YP_695516.1 110798745 4200945 1215484..1216935 1 NC_008261.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 1216935 4200945 CPF_1070 Clostridium perfringens ATCC 13124 PTS system N-acetylglucosamine-specific transporter subunit IIBC YP_695516.1 1215484 D 195103 CDS YP_695517.1 110801289 4201596 1217212..1217538 1 NC_008261.1 identified by similarity to GB:BAB81086.1; hypothetical protein 1217538 4201596 CPF_1071 Clostridium perfringens ATCC 13124 hypothetical protein YP_695517.1 1217212 D 195103 CDS YP_695518.1 110800725 4202472 1217606..1217959 1 NC_008261.1 hypothetical protein 1217959 4202472 CPF_1072 Clostridium perfringens ATCC 13124 hypothetical protein YP_695518.1 1217606 D 195103 CDS YP_695519.1 110801328 4201929 1218551..1224979 1 NC_008261.1 identified by match to protein family HMM PF00754; match to protein family HMM PF07554; discoidin domain-containing protein 1224979 4201929 CPF_1073 Clostridium perfringens ATCC 13124 discoidin domain-containing protein YP_695519.1 1218551 D 195103 CDS YP_695520.1 110800380 4201989 complement(1225148..1225447) 1 NC_008261.1 hypothetical protein 1225447 4201989 CPF_1074 Clostridium perfringens ATCC 13124 hypothetical protein YP_695520.1 1225148 R 195103 CDS YP_695521.1 110799754 4203652 1225790..1226188 1 NC_008261.1 identified by similarity to GB:BAB80595.1; hypothetical protein 1226188 4203652 CPF_1075 Clostridium perfringens ATCC 13124 hypothetical protein YP_695521.1 1225790 D 195103 CDS YP_695522.1 110799819 4203697 1226670..1228760 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512; [Fe] hydrogenase 1228760 4203697 CPF_1076 Clostridium perfringens ATCC 13124 [Fe] hydrogenase YP_695522.1 1226670 D 195103 CDS YP_695523.1 110800997 4201672 1229188..1230621 1 NC_008261.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 1230621 4201672 CPF_1077 Clostridium perfringens ATCC 13124 ABC transporter substrate-binding protein YP_695523.1 1229188 D 195103 CDS YP_695524.1 110800364 4201973 complement(1230684..1230983) 1 NC_008261.1 hypothetical protein 1230983 4201973 CPF_1078 Clostridium perfringens ATCC 13124 hypothetical protein YP_695524.1 1230684 R 195103 CDS YP_695525.1 110799322 4202185 1231260..1231358 1 NC_008261.1 hypothetical protein 1231358 4202185 CPF_1079 Clostridium perfringens ATCC 13124 hypothetical protein YP_695525.1 1231260 D 195103 CDS YP_695526.1 110798737 4202434 1231448..1232005 1 NC_008261.1 lipoprotein 1232005 4202434 CPF_1080 Clostridium perfringens ATCC 13124 lipoprotein YP_695526.1 1231448 D 195103 CDS YP_695527.1 110801410 4203006 complement(1232192..1233535) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1233535 4203006 CPF_1081 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_695527.1 1232192 R 195103 CDS YP_695528.1 110800772 4201758 complement(1233775..1234200) 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1234200 4201758 CPF_1082 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695528.1 1233775 R 195103 CDS YP_695529.1 110800150 4203547 1234312..1234443 1 NC_008261.1 hypothetical protein 1234443 4203547 CPF_1083 Clostridium perfringens ATCC 13124 hypothetical protein YP_695529.1 1234312 D 195103 CDS YP_695530.1 110799486 4202330 1234421..1234894 1 NC_008261.1 hypothetical protein 1234894 4202330 CPF_1084 Clostridium perfringens ATCC 13124 hypothetical protein YP_695530.1 1234421 D 195103 CDS YP_695531.1 110798776 4201892 1234935..1235414 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1235414 4201892 CPF_1085 Clostridium perfringens ATCC 13124 acetyltransferase YP_695531.1 1234935 D 195103 CDS YP_695532.1 110800872 4203866 complement(1235541..1236104) 1 NC_008261.1 identified by similarity to GB:BAC12292.1; hypothetical protein 1236104 4203866 CPF_1086 Clostridium perfringens ATCC 13124 hypothetical protein YP_695532.1 1235541 R 195103 CDS YP_695533.1 110800040 4203707 1237102..1245018 1 NC_008261.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02368; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR01167; match to protein family HMM TIGR02104; pullulanase 1245018 4203707 CPF_1087 Clostridium perfringens ATCC 13124 pullulanase YP_695533.1 1237102 D 195103 CDS YP_695534.1 110799879 4203001 complement(1245204..1245383) 1 NC_008261.1 identified by similarity to GB:AAO83068.1; hypothetical protein 1245383 4203001 CPF_1088 Clostridium perfringens ATCC 13124 hypothetical protein YP_695534.1 1245204 R 195103 CDS YP_695535.1 110799112 4203042 complement(1245440..1246039) 1 NC_008261.1 identified by similarity to PIR:C97066; match to protein family HMM PF02698; hypothetical protein 1246039 4203042 CPF_1089 Clostridium perfringens ATCC 13124 hypothetical protein YP_695535.1 1245440 R 195103 CDS YP_695536.1 110801200 4203121 complement(1246197..1246496) 1 NC_008261.1 lipoprotein 1246496 4203121 CPF_1090 Clostridium perfringens ATCC 13124 lipoprotein YP_695536.1 1246197 R 195103 CDS YP_695537.1 110799594 4203393 1246869..1247126 1 NC_008261.1 hypothetical protein 1247126 4203393 CPF_1091 Clostridium perfringens ATCC 13124 hypothetical protein YP_695537.1 1246869 D 195103 CDS YP_695538.1 110798777 4201893 1247365..1247949 1 NC_008261.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 1247949 4201893 CPF_1092 Clostridium perfringens ATCC 13124 ECF subfamily RNA polymerase sigma factor YP_695538.1 1247365 D 195103 CDS YP_695539.1 110799185 4202925 1247942..1248724 1 NC_008261.1 hypothetical protein 1248724 4202925 CPF_1093 Clostridium perfringens ATCC 13124 hypothetical protein YP_695539.1 1247942 D 195103 CDS YP_695540.1 110800098 4202403 1248718..1249590 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1249590 4202403 CPF_1094 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695540.1 1248718 D 195103 CDS YP_695541.1 110800577 4202343 1249595..1250866 1 NC_008261.1 hypothetical protein 1250866 4202343 CPF_1095 Clostridium perfringens ATCC 13124 hypothetical protein YP_695541.1 1249595 D 195103 CDS YP_695542.1 110799957 4203797 1250901..1252049 1 NC_008261.1 hypothetical protein 1252049 4203797 CPF_1096 Clostridium perfringens ATCC 13124 hypothetical protein YP_695542.1 1250901 D 195103 CDS YP_695543.1 110799004 4201864 complement(1252251..1252802) 1 NC_008261.1 hypothetical protein 1252802 4201864 CPF_1097 Clostridium perfringens ATCC 13124 hypothetical protein YP_695543.1 1252251 R 195103 CDS YP_695544.1 110801275 4201582 complement(1253040..1253390) 1 NC_008261.1 hypothetical protein 1253390 4201582 CPF_1098 Clostridium perfringens ATCC 13124 hypothetical protein YP_695544.1 1253040 R 195103 CDS YP_695545.1 110800280 4203620 1253541..1253813 1 NC_008261.1 hypothetical protein 1253813 4203620 CPF_1099 Clostridium perfringens ATCC 13124 hypothetical protein YP_695545.1 1253541 D 195103 CDS YP_695546.1 110799056 4202559 1256110..1256430 1 NC_008261.1 identified by similarity to GB:AAP08932.1; hypothetical protein 1256430 4202559 CPF_1100 Clostridium perfringens ATCC 13124 hypothetical protein YP_695546.1 1256110 D 195103 CDS YP_695547.1 110800911 4203593 1256667..1258130 1 NC_008261.1 identified by match to protein family HMM PF00884; sulfatase 1258130 4203593 CPF_1101 Clostridium perfringens ATCC 13124 sulfatase YP_695547.1 1256667 D 195103 CDS YP_695548.1 110800298 4202882 complement(1258382..1259071) 1 NC_008261.1 identified by similarity to GB:AAO35944.1; match to protein family HMM PF01794; hypothetical protein 1259071 4202882 CPF_1102 Clostridium perfringens ATCC 13124 hypothetical protein YP_695548.1 1258382 R 195103 CDS YP_695549.1 110799785 4203528 1259269..1261191 1 NC_008261.1 identified by match to protein family HMM PF00728; glycosyl hydrolase 1261191 4203528 CPF_1103 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695549.1 1259269 D 195103 CDS YP_695550.1 110800211 4202930 1261496..1261717 1 NC_008261.1 hypothetical protein 1261717 4202930 CPF_1104 Clostridium perfringens ATCC 13124 hypothetical protein YP_695550.1 1261496 D 195103 CDS YP_695551.1 110801023 4201935 1262167..1262631 1 NC_008261.1 identified by similarity to GB:AAO75267.1; hypothetical protein 1262631 4201935 CPF_1105 Clostridium perfringens ATCC 13124 hypothetical protein YP_695551.1 1262167 D 195103 CDS YP_695552.1 110798563 4201873 1262784..1263206 1 NC_008261.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 1263206 4201873 CPF_1106 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695552.1 1262784 D 195103 CDS YP_695553.1 110800010 4203852 1263374..1264051 1 NC_008261.1 hypothetical protein 1264051 4203852 CPF_1107 Clostridium perfringens ATCC 13124 hypothetical protein YP_695553.1 1263374 D 195103 CDS YP_695554.1 110800850 4201272 1264229..1264960 1 NC_008261.1 hypothetical protein 1264960 4201272 CPF_1108 Clostridium perfringens ATCC 13124 hypothetical protein YP_695554.1 1264229 D 195103 CDS YP_695555.1 110801307 4201908 1265288..1265839 1 NC_008261.1 hypothetical protein 1265839 4201908 CPF_1109 Clostridium perfringens ATCC 13124 hypothetical protein YP_695555.1 1265288 D 195103 CDS YP_695556.1 110800627 4202257 complement(1266078..1267121) 1 NC_008261.1 identified by match to protein family HMM PF01757; acyltransferase 1267121 4202257 CPF_1110 Clostridium perfringens ATCC 13124 acyltransferase YP_695556.1 1266078 R 195103 CDS YP_695557.1 110801096 4202865 1267397..1268917 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 1268917 4202865 CPF_1111 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695557.1 1267397 D 195103 CDS YP_695558.1 110801022 4201934 1268935..1270659 1 NC_008261.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 1270659 4201934 CPF_1112 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695558.1 1268935 D 195103 CDS YP_695559.1 110798641 4201694 1270941..1272200 1 NC_008261.1 identified by match to protein family HMM PF01547; sugar ABC transporter sugar-binding protein 1272200 4201694 CPF_1113 Clostridium perfringens ATCC 13124 sugar ABC transporter sugar-binding protein YP_695559.1 1270941 D 195103 CDS YP_695560.1 110799743 4203174 1272288..1273193 1 NC_008261.1 identified by similarity to SP:P94529; match to protein family HMM PF00528; sugar ABC transporter permease 1273193 4203174 CPF_1114 Clostridium perfringens ATCC 13124 sugar ABC transporter permease YP_695560.1 1272288 D 195103 CDS YP_695561.1 110800191 4202968 1273190..1274047 1 NC_008261.1 identified by similarity to SP:P94530; match to protein family HMM PF00528; sugar ABC transporter permease 1274047 4202968 CPF_1115 Clostridium perfringens ATCC 13124 sugar ABC transporter permease YP_695561.1 1273190 D 195103 CDS YP_695562.1 110798975 4201098 1274067..1274936 1 NC_008261.1 identified by similarity to GB:BAB80196.1; hypothetical protein 1274936 4201098 CPF_1116 Clostridium perfringens ATCC 13124 hypothetical protein YP_695562.1 1274067 D 195103 CDS YP_695563.1 110799795 4202661 1274949..1277291 1 NC_008261.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636; glycosyl hydrolase 1277291 4202661 CPF_1117 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695563.1 1274949 D 195103 CDS YP_695564.1 110799399 4203274 1277372..1278247 1 NC_008261.1 hypothetical protein 1278247 4203274 CPF_1118 Clostridium perfringens ATCC 13124 hypothetical protein YP_695564.1 1277372 D 195103 CDS YP_695565.1 110800048 4203716 1278343..1279605 1 NC_008261.1 identified by similarity to GB:BAB69460.1; match to protein family HMM PF00722; endo-beta-galactosidase, GlcNAc-alpha-1,4-Gal-releasing 1279605 gngC 4203716 gngC Clostridium perfringens ATCC 13124 endo-beta-galactosidase, GlcNAc-alpha-1,4-Gal-releasing YP_695565.1 1278343 D 195103 CDS YP_695566.1 110800898 4202803 complement(1279757..1279924) 1 NC_008261.1 hypothetical protein 1279924 4202803 CPF_1120 Clostridium perfringens ATCC 13124 hypothetical protein YP_695566.1 1279757 R 195103 CDS YP_695567.1 110801401 4203482 1280108..1280578 1 NC_008261.1 hypothetical protein 1280578 4203482 CPF_1121 Clostridium perfringens ATCC 13124 hypothetical protein YP_695567.1 1280108 D 195103 CDS YP_695568.1 110800585 4202351 1280868..1281395 1 NC_008261.1 hypothetical protein 1281395 4202351 CPF_1122 Clostridium perfringens ATCC 13124 hypothetical protein YP_695568.1 1280868 D 195103 CDS YP_695569.1 110799369 4203634 1281873..1286585 1 NC_008261.1 identified by similarity to GB:AAK27981.1; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167; cell wall-associated serine proteinase 1286585 4203634 CPF_1123 Clostridium perfringens ATCC 13124 cell wall-associated serine proteinase YP_695569.1 1281873 D 195103 CDS YP_695570.1 110798569 4202715 1287175..1287411 1 NC_008261.1 hypothetical protein 1287411 4202715 CPF_1124 Clostridium perfringens ATCC 13124 hypothetical protein YP_695570.1 1287175 D 195103 CDS YP_695571.1 110800234 4202758 complement(1287671..1289680) 1 NC_008261.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 1289680 feoB 4202758 feoB Clostridium perfringens ATCC 13124 ferrous iron transport protein B YP_695571.1 1287671 R 195103 CDS YP_695572.1 110799401 4201155 complement(1289895..1290116) 1 NC_008261.1 identified by match to protein family HMM PF04023; feoA family protein 1290116 4201155 CPF_1126 Clostridium perfringens ATCC 13124 feoA family protein YP_695572.1 1289895 R 195103 CDS YP_695573.1 110799798 4202664 complement(1290147..1290365) 1 NC_008261.1 identified by similarity to SP:P33649; match to protein family HMM PF04023; ferrous iron transport protein A 1290365 feoA 4202664 feoA Clostridium perfringens ATCC 13124 ferrous iron transport protein A YP_695573.1 1290147 R 195103 CDS YP_695574.1 110799011 4201871 complement(1290415..1290681) 1 NC_008261.1 identified by similarity to PIR:E97027; hypothetical protein 1290681 4201871 CPF_1128 Clostridium perfringens ATCC 13124 hypothetical protein YP_695574.1 1290415 R 195103 CDS YP_695575.1 110798599 4201244 complement(1291849..1292280) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1292280 4201244 CPF_1129 Clostridium perfringens ATCC 13124 acetyltransferase YP_695575.1 1291849 R 195103 CDS YP_695576.1 110801405 4203486 1292597..1292707 1 NC_008261.1 hypothetical protein 1292707 4203486 CPF_1130 Clostridium perfringens ATCC 13124 hypothetical protein YP_695576.1 1292597 D 195103 CDS YP_695577.1 110800062 4203769 1292908..1293528 1 NC_008261.1 hypothetical protein 1293528 4203769 CPF_1131 Clostridium perfringens ATCC 13124 hypothetical protein YP_695577.1 1292908 D 195103 CDS YP_695578.1 110801049 4202601 1293709..1294302 1 NC_008261.1 hypothetical protein 1294302 4202601 CPF_1132 Clostridium perfringens ATCC 13124 hypothetical protein YP_695578.1 1293709 D 195103 CDS YP_695579.1 110798967 4201380 1295026..1295997 1 NC_008261.1 identified by similarity to GB:AAP27300.1; hypothetical protein 1295997 4201380 CPF_1133 Clostridium perfringens ATCC 13124 hypothetical protein YP_695579.1 1295026 D 195103 CDS YP_695580.1 110799752 4203650 1296246..1296425 1 NC_008261.1 identified by similarity to GB:AAP11485.1; hypothetical protein 1296425 4203650 CPF_1134 Clostridium perfringens ATCC 13124 hypothetical protein YP_695580.1 1296246 D 195103 CDS YP_695581.1 110801221 4203298 complement(1296514..1297332) 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00881; nitroreductase 1297332 4203298 CPF_1135 Clostridium perfringens ATCC 13124 nitroreductase YP_695581.1 1296514 R 195103 CDS YP_695582.1 110800934 4202117 1297629..1297955 1 NC_008261.1 identified by match to protein family HMM PF01638; transcriptional regulator 1297955 4202117 CPF_1136 Clostridium perfringens ATCC 13124 transcriptional regulator YP_695582.1 1297629 D 195103 CDS YP_695583.1 110799415 4201169 1298210..1300132 1 NC_008261.1 identified by similarity to GB:AAO82003.1; match to protein family HMM PF05976; hypothetical protein 1300132 4201169 CPF_1137 Clostridium perfringens ATCC 13124 hypothetical protein YP_695583.1 1298210 D 195103 CDS YP_695584.1 110800871 4203865 1300286..1300687 1 NC_008261.1 hypothetical protein 1300687 4203865 CPF_1138 Clostridium perfringens ATCC 13124 hypothetical protein YP_695584.1 1300286 D 195103 CDS YP_695585.1 110799121 4203051 1300967..1301650 1 NC_008261.1 identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1301650 4203051 CPF_1139 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695585.1 1300967 D 195103 CDS YP_695586.1 110799522 4203184 1301654..1302910 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1302910 4203184 CPF_1140 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695586.1 1301654 D 195103 CDS YP_695587.1 110798849 4201477 1303158..1303844 1 NC_008261.1 identified by similarity to GB:BAC14469.1; hypothetical protein 1303844 4201477 CPF_1141 Clostridium perfringens ATCC 13124 hypothetical protein YP_695587.1 1303158 D 195103 CDS YP_695588.1 110800401 4201833 1303940..1304629 1 NC_008261.1 identified by similarity to GB:BAC14468.1; hypothetical protein 1304629 4201833 CPF_1142 Clostridium perfringens ATCC 13124 hypothetical protein YP_695588.1 1303940 D 195103 CDS YP_695589.1 110799978 4203761 1304725..1306764 1 NC_008261.1 identified by similarity to GB:BAC14467.1; hypothetical protein 1306764 4203761 CPF_1143 Clostridium perfringens ATCC 13124 hypothetical protein YP_695589.1 1304725 D 195103 CDS YP_695590.1 110799111 4203041 1306960..1307829 1 NC_008261.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1307829 4203041 CPF_1144 Clostridium perfringens ATCC 13124 cation efflux family protein YP_695590.1 1306960 D 195103 CDS YP_695591.1 110800861 4201283 1308049..1309422 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1309422 4201283 CPF_1145 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide oxidoreductase YP_695591.1 1308049 D 195103 CDS YP_695592.1 110800007 4203849 complement(1309503..1310750) 1 NC_008261.1 identified by similarity to GB:AAM32443.1; hypothetical protein 1310750 4203849 CPF_1146 Clostridium perfringens ATCC 13124 hypothetical protein YP_695592.1 1309503 R 195103 CDS YP_695593.1 110800887 4202792 1310920..1311867 1 NC_008261.1 hypothetical protein 1311867 4202792 CPF_1147 Clostridium perfringens ATCC 13124 hypothetical protein YP_695593.1 1310920 D 195103 CDS YP_695594.1 110800073 4203780 1312094..1315303 1 NC_008261.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; helicase 1315303 4203780 CPF_1148 Clostridium perfringens ATCC 13124 helicase YP_695594.1 1312094 D 195103 CDS YP_695595.1 110799703 4203387 1315634..1315759 1 NC_008261.1 hypothetical protein 1315759 4203387 CPF_1149 Clostridium perfringens ATCC 13124 hypothetical protein YP_695595.1 1315634 D 195103 CDS YP_695596.1 110800342 4202106 1315800..1316468 1 NC_008261.1 hypothetical protein 1316468 4202106 CPF_1150 Clostridium perfringens ATCC 13124 hypothetical protein YP_695596.1 1315800 D 195103 CDS YP_695597.1 110801287 4201594 1316688..1317374 1 NC_008261.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase 1317374 4201594 CPF_1151 Clostridium perfringens ATCC 13124 RNA pseudouridine synthase YP_695597.1 1316688 D 195103 CDS YP_695598.1 110799023 4202273 1317389..1318063 1 NC_008261.1 hypothetical protein 1318063 4202273 CPF_1152 Clostridium perfringens ATCC 13124 hypothetical protein YP_695598.1 1317389 D 195103 CDS YP_695599.1 110801044 4202596 1318654..1321323 1 NC_008261.1 identified by similarity to PIR:B39083; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 1321323 mgtA 4202596 mgtA Clostridium perfringens ATCC 13124 magnesium-translocating P-type ATPase YP_695599.1 1318654 D 195103 CDS YP_695600.1 110799443 4201527 1321433..1322194 1 NC_008261.1 identified by similarity to SP:P07914; match to protein family HMM PF00106; match to protein family HMM PF01370; 7-alpha-hydroxysteroid dehydrogenase 1322194 4201527 CPF_1154 Clostridium perfringens ATCC 13124 7-alpha-hydroxysteroid dehydrogenase YP_695600.1 1321433 D 195103 CDS YP_695601.1 110798999 4201859 1322470..1323156 1 NC_008261.1 identified by match to protein family HMM PF02308; MgtC family protein 1323156 4201859 CPF_1155 Clostridium perfringens ATCC 13124 MgtC family protein YP_695601.1 1322470 D 195103 CDS YP_695602.1 110799844 4203431 complement(1323322..1324476) 1 NC_008261.1 identified by similarity to SP:Q56106; lysine-N-methylase-like protein 1324476 4203431 CPF_1156 Clostridium perfringens ATCC 13124 lysine-N-methylase-like protein YP_695602.1 1323322 R 195103 CDS YP_695603.1 110798936 4202167 1324726..1325232 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1325232 4202167 CPF_1157 Clostridium perfringens ATCC 13124 acetyltransferase YP_695603.1 1324726 D 195103 CDS YP_695604.1 110799715 4201199 1325410..1326423 1 NC_008261.1 identified by similarity to PIR:F86821; match to protein family HMM PF02129; hypothetical protein 1326423 4201199 CPF_1158 Clostridium perfringens ATCC 13124 hypothetical protein YP_695604.1 1325410 D 195103 CDS YP_695605.1 110800711 4202458 complement(1326587..1327231) 1 NC_008261.1 identified by similarity to SP:P09548; dedA protein 1327231 dedA 4202458 dedA Clostridium perfringens ATCC 13124 dedA protein YP_695605.1 1326587 R 195103 CDS YP_695606.1 110801359 4203243 1327488..1328204 1 NC_008261.1 identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase 1328204 4203243 CPF_1160 Clostridium perfringens ATCC 13124 nitrite/sulfite reductase YP_695606.1 1327488 D 195103 CDS YP_695607.1 110798689 4202211 1328232..1328576 1 NC_008261.1 hypothetical protein 1328576 4202211 CPF_1161 Clostridium perfringens ATCC 13124 hypothetical protein YP_695607.1 1328232 D 195103 CDS YP_695608.1 110800262 4201849 1328592..1328870 1 NC_008261.1 identified by similarity to GB:AAS08237.1; hypothetical protein 1328870 4201849 CPF_1162 Clostridium perfringens ATCC 13124 hypothetical protein YP_695608.1 1328592 D 195103 CDS YP_695609.1 110800908 4203590 1328955..1329947 1 NC_008261.1 identified by similarity to GB:AAO35927.1; hypothetical protein 1329947 4203590 CPF_1163 Clostridium perfringens ATCC 13124 hypothetical protein YP_695609.1 1328955 D 195103 CDS YP_695610.1 110800284 4203624 1330169..1331968 1 NC_008261.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1331968 4203624 CPF_1164 Clostridium perfringens ATCC 13124 sensory box-containing diguanylate cyclase YP_695610.1 1330169 D 195103 CDS YP_695611.1 110799178 4202918 1332038..1332583 1 NC_008261.1 identified by match to protein family HMM PF00881; nitroreductase 1332583 4202918 CPF_1165 Clostridium perfringens ATCC 13124 nitroreductase YP_695611.1 1332038 D 195103 CDS YP_695612.1 110799932 4201456 1332864..1333490 1 NC_008261.1 hypothetical protein 1333490 4201456 CPF_1166 Clostridium perfringens ATCC 13124 hypothetical protein YP_695612.1 1332864 D 195103 CDS YP_695613.1 110800075 4202439 1333517..1333930 1 NC_008261.1 hypothetical protein 1333930 4202439 CPF_1167 Clostridium perfringens ATCC 13124 hypothetical protein YP_695613.1 1333517 D 195103 CDS YP_695614.1 110800834 4203926 1333999..1334829 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1334829 4203926 CPF_1168 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_695614.1 1333999 D 195103 CDS YP_695615.1 110799641 4202506 1335006..1335182 1 NC_008261.1 identified by similarity to GB:AAM25863.1; hypothetical protein 1335182 4202506 CPF_1169 Clostridium perfringens ATCC 13124 hypothetical protein YP_695615.1 1335006 D 195103 CDS YP_695616.1 110800510 4203365 1335411..1336115 1 NC_008261.1 identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 1336115 4203365 CPF_1170 Clostridium perfringens ATCC 13124 glycerol uptake facilitator protein YP_695616.1 1335411 D 195103 CDS YP_695617.1 110801284 4201591 1336302..1337534 1 NC_008261.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 1337534 4201591 CPF_1171 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695617.1 1336302 D 195103 CDS YP_695618.1 110800732 4201408 1337554..1338306 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 1338306 4201408 CPF_1172 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695618.1 1337554 D 195103 CDS YP_695619.1 110801202 4203123 1338644..1340308 1 NC_008261.1 identified by similarity to GB:AAB96343.1; match to protein family HMM PF02286; coenzyme B12-dependent glycerol dehydratase, large subunit 1340308 4203123 CPF_1173 Clostridium perfringens ATCC 13124 coenzyme B12-dependent glycerol dehydratase, large subunit YP_695619.1 1338644 D 195103 CDS YP_695620.1 110800527 4201183 1340322..1340888 1 NC_008261.1 identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288; coenzyme B12-dependent glycerol dehydratase, medium subunit 1340888 4201183 CPF_1174 Clostridium perfringens ATCC 13124 coenzyme B12-dependent glycerol dehydratase, medium subunit YP_695620.1 1340322 D 195103 CDS YP_695621.1 110799533 4203195 1340908..1341333 1 NC_008261.1 identified by similarity to GB:AAC27924.1; match to protein family HMM PF02287; coenzyme B12-dependent glycerol dehydratase, small subunit 1341333 4203195 CPF_1175 Clostridium perfringens ATCC 13124 coenzyme B12-dependent glycerol dehydratase, small subunit YP_695621.1 1340908 D 195103 CDS YP_695622.1 110798899 4202130 1341350..1343200 1 NC_008261.1 identified by similarity to GB:AAB48853.1; glycerol dehydratase reactivation factor, large subunit 1343200 dhaF 4202130 dhaF Clostridium perfringens ATCC 13124 glycerol dehydratase reactivation factor, large subunit YP_695622.1 1341350 D 195103 CDS YP_695623.1 110800791 4202227 1343193..1343543 1 NC_008261.1 glycerol dehydratase reactivation factor, small subunit 1343543 dhaG 4202227 dhaG Clostridium perfringens ATCC 13124 glycerol dehydratase reactivation factor, small subunit YP_695623.1 1343193 D 195103 CDS YP_695624.1 110798903 4202134 1343562..1344074 1 NC_008261.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase 1344074 4202134 CPF_1178 Clostridium perfringens ATCC 13124 ATP:cob(I)alamin adenosyltransferase YP_695624.1 1343562 D 195103 CDS YP_695625.1 110799882 4203004 1344098..1344526 1 NC_008261.1 identified by similarity to GB:AAP48648.1; match to protein family HMM PF03928; hypothetical protein 1344526 4203004 CPF_1179 Clostridium perfringens ATCC 13124 hypothetical protein YP_695625.1 1344098 D 195103 CDS YP_695626.1 110800710 4203839 1344620..1345777 1 NC_008261.1 identified by similarity to SP:P45513; match to protein family HMM PF00465; 1,3-propanediol dehydrogenase 1345777 dhaT 4203839 dhaT Clostridium perfringens ATCC 13124 1,3-propanediol dehydrogenase YP_695626.1 1344620 D 195103 CDS YP_695627.1 110801146 4201006 1346362..1347831 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 1347831 4201006 CPF_1181 Clostridium perfringens ATCC 13124 amino acid permease YP_695627.1 1346362 D 195103 CDS YP_695628.1 110799049 4201305 1348121..1348795 1 NC_008261.1 identified by similarity to SP:P58769; match to protein family HMM PF01794; hypothetical protein 1348795 4201305 CPF_1182 Clostridium perfringens ATCC 13124 hypothetical protein YP_695628.1 1348121 D 195103 CDS YP_695629.1 110798771 4201887 1349143..1349655 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1349655 4201887 CPF_1183 Clostridium perfringens ATCC 13124 acetyltransferase YP_695629.1 1349143 D 195103 CDS YP_695630.1 110800902 4202807 complement(1349723..1350502) 1 NC_008261.1 identified by similarity to GB:AAP09389.1; hypothetical protein 1350502 4202807 CPF_1184 Clostridium perfringens ATCC 13124 hypothetical protein YP_695630.1 1349723 R 195103 CDS YP_695631.1 110799005 4201865 complement(1350618..1351436) 1 NC_008261.1 hypothetical protein 1351436 4201865 CPF_1185 Clostridium perfringens ATCC 13124 hypothetical protein YP_695631.1 1350618 R 195103 CDS YP_695632.1 110799936 4201460 complement(1351547..1351915) 1 NC_008261.1 identified by match to protein family HMM PF07784; hypothetical protein 1351915 4201460 CPF_1186 Clostridium perfringens ATCC 13124 hypothetical protein YP_695632.1 1351547 R 195103 CDS YP_695633.1 110800435 4203815 complement(1351938..1352282) 1 NC_008261.1 identified by similarity to GB:AAO75277.1; match to protein family HMM PF07784; hypothetical protein 1352282 4203815 CPF_1187 Clostridium perfringens ATCC 13124 hypothetical protein YP_695633.1 1351938 R 195103 CDS YP_695634.1 110800242 4202766 1352466..1353455 1 NC_008261.1 identified by similarity to SP:P07000; match to protein family HMM PF00561; lysophospholipase 1353455 4202766 CPF_1188 Clostridium perfringens ATCC 13124 lysophospholipase YP_695634.1 1352466 D 195103 CDS YP_695635.1 110800009 4203851 complement(1353512..1354168) 1 NC_008261.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1354168 4203851 CPF_1189 Clostridium perfringens ATCC 13124 pentapeptide repeat-containing protein YP_695635.1 1353512 R 195103 CDS YP_695636.1 110800036 4203703 complement(1354425..1355201) 1 NC_008261.1 hypothetical protein 1355201 4203703 CPF_1190 Clostridium perfringens ATCC 13124 hypothetical protein YP_695636.1 1354425 R 195103 CDS YP_695637.1 110799607 4203407 1356064..1357371 1 NC_008261.1 identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter family protein 1357371 4203407 CPF_1191 Clostridium perfringens ATCC 13124 sodium/dicarboxylate symporter family protein YP_695637.1 1356064 D 195103 CDS YP_695638.1 110798796 4201133 1357715..1358404 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1358404 4201133 CPF_1192 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695638.1 1357715 D 195103 CDS YP_695639.1 110801261 4201568 1358614..1359534 1 NC_008261.1 identified by similarity to SP:P42332; match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein 1359534 4201568 CPF_1193 Clostridium perfringens ATCC 13124 bacitracin ABC transporter ATP-binding protein YP_695639.1 1358614 D 195103 CDS YP_695640.1 110800918 4203600 1359527..1360279 1 NC_008261.1 identified by similarity to SP:P42333; hypothetical protein 1360279 4203600 CPF_1194 Clostridium perfringens ATCC 13124 hypothetical protein YP_695640.1 1359527 D 195103 CDS YP_695641.2 261876167 4201146 1360293..1361198 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1361198 hpkA 4201146 hpkA Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695641.2 1360293 D 195103 CDS YP_695642.1 110799671 4201718 complement(1361302..1361529) 1 NC_008261.1 identified by similarity to GB:AAO52845.1; hypothetical protein 1361529 4201718 CPF_1196 Clostridium perfringens ATCC 13124 hypothetical protein YP_695642.1 1361302 R 195103 CDS YP_695643.1 110801320 4201921 1361829..1363040 1 NC_008261.1 identified by match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase 1363040 4201921 CPF_1197 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide oxidoreductase YP_695643.1 1361829 D 195103 CDS YP_695644.1 110801283 4201590 1363257..1363793 1 NC_008261.1 identified by match to protein family HMM PF00255; glutathione peroxidase 1363793 4201590 CPF_1198 Clostridium perfringens ATCC 13124 glutathione peroxidase YP_695644.1 1363257 D 195103 CDS YP_695645.1 110799273 4203068 1364004..1364669 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1364669 4203068 CPF_1199 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695645.1 1364004 D 195103 CDS YP_695646.1 110798706 4201312 1364725..1365642 1 NC_008261.1 hypothetical protein 1365642 4201312 CPF_1200 Clostridium perfringens ATCC 13124 hypothetical protein YP_695646.1 1364725 D 195103 CDS YP_695647.1 110801318 4201919 1365653..1366948 1 NC_008261.1 identified by match to protein family HMM PF02687; permease 1366948 4201919 CPF_1201 Clostridium perfringens ATCC 13124 permease YP_695647.1 1365653 D 195103 CDS YP_695648.1 110799319 4203155 complement(1367043..1368245) 1 NC_008261.1 identified by match to protein family HMM PF01391; triple helix repeat-containing collagen 1368245 4203155 CPF_1202 Clostridium perfringens ATCC 13124 triple helix repeat-containing collagen YP_695648.1 1367043 R 195103 CDS YP_695649.1 110800249 4201836 complement(1368347..1368937) 1 NC_008261.1 identified by match to protein family HMM PF04307; metal-dependent hydrolase, membrane-bound 1368937 4201836 CPF_1203 Clostridium perfringens ATCC 13124 metal-dependent hydrolase, membrane-bound YP_695649.1 1368347 R 195103 CDS YP_695650.1 110799097 4202817 complement(1369129..1369356) 1 NC_008261.1 hypothetical protein 1369356 4202817 CPF_1204 Clostridium perfringens ATCC 13124 hypothetical protein YP_695650.1 1369129 R 195103 CDS YP_695651.1 110798626 4201679 1369560..1370174 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 1370174 4201679 CPF_1205 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_695651.1 1369560 D 195103 CDS YP_695652.1 110801195 4203116 complement(1370269..1370424) 1 NC_008261.1 hypothetical protein 1370424 4203116 CPF_1206 Clostridium perfringens ATCC 13124 hypothetical protein YP_695652.1 1370269 R 195103 CDS YP_695653.1 110799366 4203631 1370553..1371194 1 NC_008261.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1371194 4203631 CPF_1207 Clostridium perfringens ATCC 13124 pentapeptide repeat-containing protein YP_695653.1 1370553 D 195103 CDS YP_695654.1 110798588 4201233 1371401..1371832 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1371832 4201233 CPF_1208 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695654.1 1371401 D 195103 CDS YP_695655.1 110801003 4201348 1372101..1372193 1 NC_008261.1 K+-transporting ATPase subunit F 1372193 4201348 CPF_1209 Clostridium perfringens ATCC 13124 K+-transporting ATPase subunit F YP_695655.1 1372101 D 195103 CDS YP_695656.1 110800213 4202932 1372186..1373922 1 NC_008261.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 1373922 kdpA 4202932 kdpA Clostridium perfringens ATCC 13124 potassium-transporting ATPase subunit A YP_695656.1 1372186 D 195103 CDS YP_695657.1 110801156 4201016 1373936..1376002 1 NC_008261.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 1376002 kdpB 4201016 kdpB Clostridium perfringens ATCC 13124 potassium-transporting ATPase subunit B YP_695657.1 1373936 D 195103 CDS YP_695658.1 110800229 4202753 1376017..1376613 1 NC_008261.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 1376613 kdpC 4202753 kdpC Clostridium perfringens ATCC 13124 potassium-transporting ATPase subunit C YP_695658.1 1376017 D 195103 CDS YP_695659.1 110799898 4203914 1376625..1379327 1 NC_008261.1 identified by similarity to SP:P94608; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 1379327 kdpD 4203914 kdpD Clostridium perfringens ATCC 13124 sensor histidine kinase KdpD YP_695659.1 1376625 D 195103 CDS YP_695660.1 110798945 4202176 1379302..1380015 1 NC_008261.1 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdpE 1380015 kdpE 4202176 kdpE Clostridium perfringens ATCC 13124 DNA-binding response regulator KdpE YP_695660.1 1379302 D 195103 CDS YP_695661.1 110798630 4201683 1380017..1380388 1 NC_008261.1 hypothetical protein 1380388 4201683 CPF_1215 Clostridium perfringens ATCC 13124 hypothetical protein YP_695661.1 1380017 D 195103 CDS YP_695662.1 110801039 4201951 1380631..1381590 1 NC_008261.1 hypothetical protein 1381590 4201951 CPF_1216 Clostridium perfringens ATCC 13124 hypothetical protein YP_695662.1 1380631 D 195103 CDS YP_695663.1 110800992 4201667 complement(1381694..1383316) 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 1383316 4201667 CPF_1217 Clostridium perfringens ATCC 13124 amino acid permease YP_695663.1 1381694 R 195103 CDS YP_695664.1 110799692 4203376 1383719..1383889 1 NC_008261.1 hypothetical protein 1383889 4203376 CPF_1218 Clostridium perfringens ATCC 13124 hypothetical protein YP_695664.1 1383719 D 195103 CDS YP_695665.1 110799065 4202568 1384000..1384122 1 NC_008261.1 hypothetical protein 1384122 4202568 CPF_1219 Clostridium perfringens ATCC 13124 hypothetical protein YP_695665.1 1384000 D 195103 CDS YP_695666.1 110799538 4202635 complement(1384213..1385850) 1 NC_008261.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1385850 4202635 CPF_1220 Clostridium perfringens ATCC 13124 diguanylate cyclase YP_695666.1 1384213 R 195103 CDS YP_695667.1 110800840 4203932 1386055..1390422 1 NC_008261.1 identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; match to protein family HMM TIGR01167; beta-galactosidase 1390422 lacZ 4203932 lacZ Clostridium perfringens ATCC 13124 beta-galactosidase YP_695667.1 1386055 D 195103 CDS YP_695668.1 110800005 4203847 1390797..1391276 1 NC_008261.1 hypothetical protein 1391276 4203847 CPF_1222 Clostridium perfringens ATCC 13124 hypothetical protein YP_695668.1 1390797 D 195103 CDS YP_695669.1 110800158 4203555 1391813..1392976 1 NC_008261.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1392976 4203555 CPF_1223 Clostridium perfringens ATCC 13124 sodium:dicarboxylate symporter family protein YP_695669.1 1391813 D 195103 CDS YP_695670.1 110799235 4201804 1393308..1394303 1 NC_008261.1 hypothetical protein 1394303 4201804 CPF_1224 Clostridium perfringens ATCC 13124 hypothetical protein YP_695670.1 1393308 D 195103 CDS YP_695671.1 110801349 4203232 1394319..1394438 1 NC_008261.1 hypothetical protein 1394438 4203232 CPF_1225 Clostridium perfringens ATCC 13124 hypothetical protein YP_695671.1 1394319 D 195103 CDS YP_695672.1 110799071 4201039 1394596..1396506 1 NC_008261.1 hypothetical protein 1396506 4201039 CPF_1226 Clostridium perfringens ATCC 13124 hypothetical protein YP_695672.1 1394596 D 195103 CDS YP_695673.1 110799739 4203170 complement(1396754..1398208) 1 NC_008261.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; monovalent cation:proton antiporter-2 (CPA2) family protein 1398208 4203170 CPF_1227 Clostridium perfringens ATCC 13124 monovalent cation:proton antiporter-2 (CPA2) family protein YP_695673.1 1396754 R 195103 CDS YP_695674.1 110799083 4201051 complement(1398237..1398857) 1 NC_008261.1 identified by similarity to GB:AAU19924.1; hypothetical protein 1398857 4201051 CPF_1228 Clostridium perfringens ATCC 13124 hypothetical protein YP_695674.1 1398237 R 195103 CDS YP_695675.1 110801334 4203217 1399095..1399880 1 NC_008261.1 identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphate phosphatase 1399880 4203217 CPF_1229 Clostridium perfringens ATCC 13124 histidinol phosphate phosphatase YP_695675.1 1399095 D 195103 CDS YP_695676.1 110800645 4202003 complement(1399912..1400052) 1 NC_008261.1 hypothetical protein 1400052 4202003 CPF_1230 Clostridium perfringens ATCC 13124 hypothetical protein YP_695676.1 1399912 R 195103 CDS YP_695677.1 110799440 4201524 complement(1400064..1400234) 1 NC_008261.1 hypothetical protein 1400234 4201524 CPF_1231 Clostridium perfringens ATCC 13124 hypothetical protein YP_695677.1 1400064 R 195103 CDS YP_695678.1 110800508 4203363 complement(1400550..1401569) 1 NC_008261.1 identified by similarity to GB:AAU17187.1; hypothetical protein 1401569 4203363 CPF_1232 Clostridium perfringens ATCC 13124 hypothetical protein YP_695678.1 1400550 R 195103 CDS YP_695679.1 110800811 4201081 1401770..1403710 1 NC_008261.1 identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231; tetracycline resistance protein 1403710 4201081 CPF_1233 Clostridium perfringens ATCC 13124 tetracycline resistance protein YP_695679.1 1401770 D 195103 CDS YP_695680.1 110798583 4202729 1403875..1404228 1 NC_008261.1 hypothetical protein 1404228 4202729 CPF_1234 Clostridium perfringens ATCC 13124 hypothetical protein YP_695680.1 1403875 D 195103 CDS YP_695681.1 110799176 4202916 complement(1404332..1406329) 1 NC_008261.1 identified by match to protein family HMM PF02705; potassium transporter 1406329 4202916 CPF_1235 Clostridium perfringens ATCC 13124 potassium transporter YP_695681.1 1404332 R 195103 CDS YP_695682.1 110800167 4203564 complement(1406857..1407369) 1 NC_008261.1 identified by match to protein family HMM PF00210; ferritin 1407369 4203564 CPF_1236 Clostridium perfringens ATCC 13124 ferritin YP_695682.1 1406857 R 195103 CDS YP_695683.1 110799001 4201861 complement(1407519..1408337) 1 NC_008261.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883; AraC family transcriptional regulator 1408337 4201861 CPF_1237 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_695683.1 1407519 R 195103 CDS YP_695684.1 110799990 4201260 1408498..1410330 1 NC_008261.1 identified by match to protein family HMM PF00728; glycosyl hydrolase 1410330 4201260 CPF_1238 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695684.1 1408498 D 195103 CDS YP_695685.1 110800620 4202250 1410448..1410915 1 NC_008261.1 hypothetical protein 1410915 4202250 CPF_1239 Clostridium perfringens ATCC 13124 hypothetical protein YP_695685.1 1410448 D 195103 CDS YP_695686.1 110800878 4203872 complement(1411035..1411805) 1 NC_008261.1 identified by similarity to PIR:B96993; hypothetical protein 1411805 4203872 CPF_1240 Clostridium perfringens ATCC 13124 hypothetical protein YP_695686.1 1411035 R 195103 CDS YP_695687.1 110798907 4202138 complement(1411936..1413357) 1 NC_008261.1 identified by similarity to SP:P31845; match to protein family HMM PF03323; spore germination protein AF 1413357 spoVAF 4202138 spoVAF Clostridium perfringens ATCC 13124 spore germination protein AF YP_695687.1 1411936 R 195103 CDS YP_695688.1 110800545 4202897 complement(1413590..1415098) 1 NC_008261.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; dicarboxylate transporter 1415098 4202897 CPF_1242 Clostridium perfringens ATCC 13124 dicarboxylate transporter YP_695688.1 1413590 R 195103 CDS YP_695689.1 110801193 4203114 1415500..1417371 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1417371 4203114 CPF_1243 Clostridium perfringens ATCC 13124 sensory box histidine kinase YP_695689.1 1415500 D 195103 CDS YP_695690.1 110799501 4202054 1417595..1418662 1 NC_008261.1 hypothetical protein 1418662 4202054 CPF_1244 Clostridium perfringens ATCC 13124 hypothetical protein YP_695690.1 1417595 D 195103 CDS YP_695691.1 110799908 4203203 1418694..1419374 1 NC_008261.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 1419374 sdhB 4203203 sdhB Clostridium perfringens ATCC 13124 L-serine dehydratase, iron-sulfur-dependent subunit beta YP_695691.1 1418694 D 195103 CDS YP_695692.1 110800733 4201409 1419378..1420256 1 NC_008261.1 identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1420256 sdhA 4201409 sdhA Clostridium perfringens ATCC 13124 L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_695692.1 1419378 D 195103 CDS YP_695693.1 110801239 4203316 complement(1420324..1421058) 1 NC_008261.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; exoenzyme S synthesis protein B 1421058 4203316 CPF_1247 Clostridium perfringens ATCC 13124 exoenzyme S synthesis protein B YP_695693.1 1420324 R 195103 CDS YP_695694.1 110800554 4202906 1421265..1422011 1 NC_008261.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1422011 truA 4202906 truA Clostridium perfringens ATCC 13124 tRNA pseudouridine synthase A YP_695694.1 1421265 D 195103 CDS YP_695695.1 110799999 4203841 complement(1422078..1423145) 1 NC_008261.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1423145 4203841 CPF_1249 Clostridium perfringens ATCC 13124 2-nitropropane dioxygenase YP_695695.1 1422078 R 195103 CDS YP_695696.1 110801364 4203248 1423346..1424056 1 NC_008261.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1424056 4203248 CPF_1250 Clostridium perfringens ATCC 13124 Crp/FNR family transcriptional regulator YP_695696.1 1423346 D 195103 CDS YP_695697.1 110798766 4201882 complement(1424113..1425024) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1425024 4201882 CPF_1251 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_695697.1 1424113 R 195103 CDS YP_695698.1 110799370 4203635 1425168..1426202 1 NC_008261.1 identified by match to protein family HMM PF05343; aminopeptidase 1426202 4203635 CPF_1252 Clostridium perfringens ATCC 13124 aminopeptidase YP_695698.1 1425168 D 195103 CDS YP_695699.1 110799491 4202335 1426521..1427192 1 NC_008261.1 hypothetical protein 1427192 4202335 CPF_1253 Clostridium perfringens ATCC 13124 hypothetical protein YP_695699.1 1426521 D 195103 CDS YP_695700.1 110800288 4202871 1427208..1428884 1 NC_008261.1 hypothetical protein 1428884 4202871 CPF_1254 Clostridium perfringens ATCC 13124 hypothetical protein YP_695700.1 1427208 D 195103 CDS YP_695701.1 110799054 4202557 1429551..1431209 1 NC_008261.1 identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1431209 gltX 4202557 gltX Clostridium perfringens ATCC 13124 glutamyl-tRNA synthetase YP_695701.1 1429551 D 195103 CDS YP_695702.1 110799741 4203172 1431385..1431540 1 NC_008261.1 identified by similarity to PIR:A96978; hypothetical protein 1431540 4203172 CPF_1256 Clostridium perfringens ATCC 13124 hypothetical protein YP_695702.1 1431385 D 195103 CDS YP_695703.1 110799843 4203741 1431768..1432382 1 NC_008261.1 identified by similarity to PIR:E97022; match to protein family HMM PF06571; hypothetical protein 1432382 4203741 CPF_1257 Clostridium perfringens ATCC 13124 hypothetical protein YP_695703.1 1431768 D 195103 CDS YP_695704.1 110799427 4202542 complement(1432475..1434097) 1 NC_008261.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1434097 aspD 4202542 aspD Clostridium perfringens ATCC 13124 aspartate aminotransferase YP_695704.1 1432475 R 195103 CDS YP_695705.1 110798845 4201473 complement(1434229..1435251) 1 NC_008261.1 hypothetical protein 1435251 4201473 CPF_1259 Clostridium perfringens ATCC 13124 hypothetical protein YP_695705.1 1434229 R 195103 CDS YP_695706.1 110800904 4202809 1435556..1435735 1 NC_008261.1 identified by similarity to SP:P60083; match to protein family HMM PF05979; hypothetical protein 1435735 4202809 CPF_1260 Clostridium perfringens ATCC 13124 hypothetical protein YP_695706.1 1435556 D 195103 CDS YP_695707.1 110800474 4201557 1435747..1436670 1 NC_008261.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1436670 hprK 4201557 hprK Clostridium perfringens ATCC 13124 HPr kinase/phosphorylase YP_695707.1 1435747 D 195103 CDS YP_695708.1 110800323 4202165 1436715..1437644 1 NC_008261.1 identified by match to protein family HMM PF01544; cation transporter 1437644 4202165 CPF_1262 Clostridium perfringens ATCC 13124 cation transporter YP_695708.1 1436715 D 195103 CDS YP_695709.1 110800959 4203348 1437711..1439117 1 NC_008261.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1439117 4203348 CPF_1263 Clostridium perfringens ATCC 13124 aminopeptidase 1 YP_695709.1 1437711 D 195103 CDS YP_695710.1 110798720 4201326 1439242..1440765 1 NC_008261.1 identified by similarity to GB:AAC61683.1; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1440765 4201326 CPF_1264 Clostridium perfringens ATCC 13124 diguanylate cyclase YP_695710.1 1439242 D 195103 CDS YP_695711.1 110799339 4202202 1440934..1441293 1 NC_008261.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1441293 mgsA 4202202 mgsA Clostridium perfringens ATCC 13124 methylglyoxal synthase YP_695711.1 1440934 D 195103 CDS YP_695712.1 110800808 4201078 1441486..1441746 1 NC_008261.1 identified by similarity to GB:BAD75135.1; hypothetical protein 1441746 4201078 CPF_1266 Clostridium perfringens ATCC 13124 hypothetical protein YP_695712.1 1441486 D 195103 CDS YP_695713.1 110801250 4203327 1441830..1442210 1 NC_008261.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1442210 4203327 CPF_1267 Clostridium perfringens ATCC 13124 endoribonuclease L-PSP YP_695713.1 1441830 D 195103 CDS YP_695714.1 110798618 4202745 1442254..1442499 1 NC_008261.1 identified by similarity to PIR:C97194; hypothetical protein 1442499 4202745 CPF_1268 Clostridium perfringens ATCC 13124 hypothetical protein YP_695714.1 1442254 D 195103 CDS YP_695715.1 110799618 4201492 complement(1442606..1445242) 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992; rubredoxin/flavodoxin/oxidoreductase 1445242 4201492 CPF_1269 Clostridium perfringens ATCC 13124 rubredoxin/flavodoxin/oxidoreductase YP_695715.1 1442606 R 195103 CDS YP_695716.1 110799839 4203737 complement(1445447..1446289) 1 NC_008261.1 identified by similarity to PIR:D84071; match to protein family HMM PF02811; hypothetical protein 1446289 4203737 CPF_1270 Clostridium perfringens ATCC 13124 hypothetical protein YP_695716.1 1445447 R 195103 CDS YP_695717.1 110800842 4203934 1446556..1447146 1 NC_008261.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1447146 pabA 4203934 pabA Clostridium perfringens ATCC 13124 anthranilate synthase component II YP_695717.1 1446556 D 195103 CDS YP_695718.1 110799067 4202570 1447152..1448498 1 NC_008261.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 1448498 pabB 4202570 pabB Clostridium perfringens ATCC 13124 para-aminobenzoate synthase, component I YP_695718.1 1447152 D 195103 CDS YP_695719.1 110800303 4202887 1448552..1449286 1 NC_008261.1 identified by similarity to GB:AAO91868.1; match to protein family HMM PF01063; branched-chain amino acid aminotransferase 1449286 4202887 CPF_1273 Clostridium perfringens ATCC 13124 branched-chain amino acid aminotransferase YP_695719.1 1448552 D 195103 CDS YP_695720.1 110801052 4202604 1449301..1449858 1 NC_008261.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1449858 folE 4202604 folE Clostridium perfringens ATCC 13124 GTP cyclohydrolase I YP_695720.1 1449301 D 195103 CDS YP_695721.1 110801138 4201639 1449884..1450357 1 NC_008261.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1450357 4201639 CPF_1275 Clostridium perfringens ATCC 13124 HDIG domain-containing protein YP_695721.1 1449884 D 195103 CDS YP_695722.1 110799267 4203062 1450370..1451179 1 NC_008261.1 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1451179 folP 4203062 folP Clostridium perfringens ATCC 13124 dihydropteroate synthase YP_695722.1 1450370 D 195103 CDS YP_695723.1 110798735 4202432 1451192..1452013 1 NC_008261.1 identified by similarity to SP:P22291; match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 1452013 folBK 4202432 folBK Clostridium perfringens ATCC 13124 dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_695723.1 1451192 D 195103 CDS YP_695724.1 110799680 4201727 complement(1452084..1452551) 1 NC_008261.1 lipoprotein 1452551 4201727 CPF_1278 Clostridium perfringens ATCC 13124 lipoprotein YP_695724.1 1452084 R 195103 CDS YP_695725.1 110800637 4201995 1452669..1453109 1 NC_008261.1 hypothetical protein 1453109 4201995 CPF_1279 Clostridium perfringens ATCC 13124 hypothetical protein YP_695725.1 1452669 D 195103 CDS YP_695726.1 110800976 4202295 1453478..1454560 1 NC_008261.1 identified by match to protein family HMM PF00224; pyruvate kinase barrel domain-containing protein 1454560 4202295 CPF_1281 Clostridium perfringens ATCC 13124 pyruvate kinase barrel domain-containing protein YP_695726.1 1453478 D 195103 CDS YP_695727.1 110799074 4201042 complement(1454557..1455114) 1 NC_008261.1 identified by match to protein family HMM PF01569; PAP2 family protein 1455114 4201042 CPF_1280 Clostridium perfringens ATCC 13124 PAP2 family protein YP_695727.1 1454557 R 195103 CDS YP_695728.1 110800088 4202452 1455336..1456739 1 NC_008261.1 hypothetical protein 1456739 4202452 CPF_1283 Clostridium perfringens ATCC 13124 hypothetical protein YP_695728.1 1455336 D 195103 CDS YP_695729.1 110800736 4201412 complement(1456736..1457077) 1 NC_008261.1 identified by match to protein family HMM PF02641; hypothetical protein 1457077 4201412 CPF_1282 Clostridium perfringens ATCC 13124 hypothetical protein YP_695729.1 1456736 R 195103 CDS YP_695730.1 110799749 4203647 complement(1457097..1457483) 1 NC_008261.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1457483 crcB 4203647 crcB Clostridium perfringens ATCC 13124 camphor resistance protein CrcB YP_695730.1 1457097 R 195103 CDS YP_695731.1 110799579 4202676 1458047..1459450 1 NC_008261.1 identified by similarity to PIR:D83749; hypothetical protein 1459450 4202676 CPF_1285 Clostridium perfringens ATCC 13124 hypothetical protein YP_695731.1 1458047 D 195103 CDS YP_695732.1 110800373 4201982 1459669..1460403 1 NC_008261.1 identified by match to protein family HMM PF01022; match to protein family HMM PF02579; ArsR family transcriptional regulator 1460403 4201982 CPF_1286 Clostridium perfringens ATCC 13124 ArsR family transcriptional regulator YP_695732.1 1459669 D 195103 CDS YP_695733.1 110801177 4201037 1460615..1461913 1 NC_008261.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1461913 4201037 CPF_1287 Clostridium perfringens ATCC 13124 amidohydrolase YP_695733.1 1460615 D 195103 CDS YP_695734.1 110798855 4201483 complement(1462223..1463023) 1 NC_008261.1 identified by match to protein family HMM PF01633; match to protein family HMM PF01636; choline/ethanolamine kinase 1463023 4201483 CPF_1288 Clostridium perfringens ATCC 13124 choline/ethanolamine kinase YP_695734.1 1462223 R 195103 CDS YP_695735.1 110799489 4202333 1463088..1464173 1 NC_008261.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1464173 cobT 4202333 cobT Clostridium perfringens ATCC 13124 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_695735.1 1463088 D 195103 CDS YP_695736.1 110800121 4203888 1464211..1464771 1 NC_008261.1 hypothetical protein 1464771 4203888 CPF_1290 Clostridium perfringens ATCC 13124 hypothetical protein YP_695736.1 1464211 D 195103 CDS YP_695737.1 110800171 4203665 1464755..1465510 1 NC_008261.1 identified by similarity to SP:P36561; match to protein family HMM PF02654; cobalamin-5-phosphate synthase 1465510 cobS 4203665 cobS Clostridium perfringens ATCC 13124 cobalamin-5-phosphate synthase YP_695737.1 1464755 D 195103 CDS YP_695738.1 110800782 4201768 1465524..1465904 1 NC_008261.1 identified by similarity to GB:BAD76543.1; hypothetical protein 1465904 4201768 CPF_1292 Clostridium perfringens ATCC 13124 hypothetical protein YP_695738.1 1465524 D 195103 CDS YP_695739.1 110799958 4203798 1465909..1466553 1 NC_008261.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase 1466553 4203798 CPF_1293 Clostridium perfringens ATCC 13124 phosphoglycerate mutase YP_695739.1 1465909 D 195103 CDS YP_695740.1 110800617 4202247 1466556..1467503 1 NC_008261.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1467503 cobD 4202247 cobD Clostridium perfringens ATCC 13124 cobalamin biosynthesis protein YP_695740.1 1466556 D 195103 CDS YP_695741.1 110800703 4203832 1467500..1468564 1 NC_008261.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1468564 4203832 CPF_1295 Clostridium perfringens ATCC 13124 threonine-phosphate decarboxylase YP_695741.1 1467500 D 195103 CDS YP_695742.1 110798598 4201243 1469138..1470055 1 NC_008261.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1470055 4201243 CPF_1296 Clostridium perfringens ATCC 13124 iron ABC transporter substrate-binding protein YP_695742.1 1469138 D 195103 CDS YP_695743.1 110799317 4203153 1470042..1471073 1 NC_008261.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 1471073 4203153 CPF_1297 Clostridium perfringens ATCC 13124 iron ABC transporter permease YP_695743.1 1470042 D 195103 CDS YP_695744.1 110800307 4202149 1471078..1471833 1 NC_008261.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1471833 4202149 CPF_1298 Clostridium perfringens ATCC 13124 iron ABC transporter ATP-binding protein YP_695744.1 1471078 D 195103 CDS YP_695745.1 110800944 4203333 1471843..1472496 1 NC_008261.1 identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290; hypothetical protein 1472496 4203333 CPF_1299 Clostridium perfringens ATCC 13124 hypothetical protein YP_695745.1 1471843 D 195103 CDS YP_695746.1 110799830 4203728 1472506..1473969 1 NC_008261.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1473969 cobQ 4203728 cobQ Clostridium perfringens ATCC 13124 cobyric acid synthase YP_695746.1 1472506 D 195103 CDS YP_695747.1 110800450 4202370 1474245..1480142 1 NC_008261.1 identified by similarity to SP:Q9F234; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF01055; match to protein family HMM PF02368; match to protein family HMM PF07554; glycosyl hydrolase 31 protein 1480142 4202370 CPF_1301 Clostridium perfringens ATCC 13124 glycosyl hydrolase 31 protein YP_695747.1 1474245 D 195103 CDS YP_695748.1 110798727 4202424 1480235..1480684 1 NC_008261.1 hypothetical protein 1480684 4202424 CPF_1302 Clostridium perfringens ATCC 13124 hypothetical protein YP_695748.1 1480235 D 195103 CDS YP_695749.1 110799159 4202840 1480907..1481350 1 NC_008261.1 hypothetical protein 1481350 4202840 CPF_1303 Clostridium perfringens ATCC 13124 hypothetical protein YP_695749.1 1480907 D 195103 CDS YP_695750.1 110800226 4202945 1481572..1482738 1 NC_008261.1 identified by similarity to GB:AAS10713.1; hypothetical protein 1482738 4202945 CPF_1304 Clostridium perfringens ATCC 13124 hypothetical protein YP_695750.1 1481572 D 195103 CDS YP_695751.1 110799423 4202538 1483031..1483831 1 NC_008261.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1483831 mtnN 4202538 mtnN Clostridium perfringens ATCC 13124 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_695751.1 1483031 D 195103 CDS YP_695752.1 110799588 4202686 complement(1483878..1484021) 1 NC_008261.1 hypothetical protein 1484021 4202686 CPF_1306 Clostridium perfringens ATCC 13124 hypothetical protein YP_695752.1 1483878 R 195103 CDS YP_695753.1 110798773 4201889 complement(1484182..1485366) 1 NC_008261.1 identified by similarity to SP:P30010; match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase 1485366 cfa 4201889 cfa Clostridium perfringens ATCC 13124 cyclopropane-fatty-acyl-phospholipid synthase YP_695753.1 1484182 R 195103 CDS YP_695754.1 110800334 4202098 1485699..1487054 1 NC_008261.1 identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 1487054 4202098 CPF_1308 Clostridium perfringens ATCC 13124 thiosulfate sulfurtransferase YP_695754.1 1485699 D 195103 CDS YP_695755.1 110800180 4203674 1487058..1487483 1 NC_008261.1 hypothetical protein 1487483 4203674 CPF_1309 Clostridium perfringens ATCC 13124 hypothetical protein YP_695755.1 1487058 D 195103 CDS YP_695756.1 110799873 4202995 1487787..1488026 1 NC_008261.1 identified by similarity to PIR:D97107; hypothetical protein 1488026 4202995 CPF_1310 Clostridium perfringens ATCC 13124 hypothetical protein YP_695756.1 1487787 D 195103 CDS YP_695757.1 110798703 4201309 1488217..1489005 1 NC_008261.1 identified by match to protein family HMM PF03372; hypothetical protein 1489005 4201309 CPF_1311 Clostridium perfringens ATCC 13124 hypothetical protein YP_695757.1 1488217 D 195103 CDS YP_695758.1 110798699 4202221 1489189..1490013 1 NC_008261.1 catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 1490013 hisK 4202221 hisK Clostridium perfringens ATCC 13124 histidinol-phosphatase YP_695758.1 1489189 D 195103 CDS YP_695759.1 110800967 4202286 complement(1490139..1491560) 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1491560 4202286 CPF_1313 Clostridium perfringens ATCC 13124 hypothetical protein YP_695759.1 1490139 R 195103 CDS YP_695760.1 110799343 4203081 complement(1491920..1493827) 1 NC_008261.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1493827 nadE 4203081 nadE Clostridium perfringens ATCC 13124 NAD synthetase YP_695760.1 1491920 R 195103 CDS YP_695761.1 110798980 4201103 1494141..1494554 1 NC_008261.1 identified by similarity to PIR:H97029; match to protein family HMM PF01957; hypothetical protein 1494554 4201103 CPF_1315 Clostridium perfringens ATCC 13124 hypothetical protein YP_695761.1 1494141 D 195103 CDS YP_695762.1 110799677 4201724 1494574..1495524 1 NC_008261.1 identified by match to protein family HMM PF01145; hypothetical protein 1495524 4201724 CPF_1316 Clostridium perfringens ATCC 13124 hypothetical protein YP_695762.1 1494574 D 195103 CDS YP_695763.1 110799046 4201302 1495704..1496756 1 NC_008261.1 identified by match to protein family HMM PF01168; alanine racemase 1496756 4201302 CPF_1317 Clostridium perfringens ATCC 13124 alanine racemase YP_695763.1 1495704 D 195103 CDS YP_695764.1 110800928 4202111 1496989..1498023 1 NC_008261.1 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 1498023 rnfG 4202111 rnfG Clostridium perfringens ATCC 13124 RnfABCDGE type electron transport complex subunit G YP_695764.1 1496989 D 195103 CDS YP_695765.1 110800058 4203765 1498041..1498709 1 NC_008261.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1498709 rnfE 4203765 rnfE Clostridium perfringens ATCC 13124 electron transport complex protein RsxE YP_695765.1 1498041 D 195103 CDS YP_695766.1 110800105 4202410 1498740..1499315 1 NC_008261.1 identified by similarity to GB:BAB35759.1; match to protein family HMM PF02508; match to protein family HMM TIGR01943; RnfABCDGE type electron transport complex subunit A 1499315 rnfA 4202410 rnfA Clostridium perfringens ATCC 13124 RnfABCDGE type electron transport complex subunit A YP_695766.1 1498740 D 195103 CDS YP_695767.1 110798895 4203430 1499332..1500153 1 NC_008261.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 1500153 rnfB 4203430 rnfB Clostridium perfringens ATCC 13124 ferredoxin YP_695767.1 1499332 D 195103 CDS YP_695768.1 110801187 4203108 1500217..1500717 1 NC_008261.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1500717 4203108 CPF_1322 Clostridium perfringens ATCC 13124 cytidine/deoxycytidylate deaminase YP_695768.1 1500217 D 195103 CDS YP_695769.1 110800518 4201174 1500889..1501353 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1501353 4201174 CPF_1323 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695769.1 1500889 D 195103 CDS YP_695770.1 110799885 4203901 1501355..1502329 1 NC_008261.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1502329 fabH 4203901 fabH Clostridium perfringens ATCC 13124 3-oxoacyl-ACP synthase YP_695770.1 1501355 D 195103 CDS YP_695771.1 110799260 4202084 1502426..1503370 1 NC_008261.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1503370 fabD 4202084 fabD Clostridium perfringens ATCC 13124 malonyl CoA-acyl carrier protein transacylase YP_695771.1 1502426 D 195103 CDS YP_695772.1 110800799 4202235 1503374..1504114 1 NC_008261.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1504114 fabG 4202235 fabG Clostridium perfringens ATCC 13124 3-ketoacyl-ACP reductase YP_695772.1 1503374 D 195103 CDS YP_695773.1 110800135 4203532 1504129..1505370 1 NC_008261.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1505370 fabF 4203532 fabF Clostridium perfringens ATCC 13124 3-oxoacyl-ACP synthase YP_695773.1 1504129 D 195103 CDS YP_695774.1 110799523 4203185 1505382..1505873 1 NC_008261.1 identified by similarity to SP:P49786; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1505873 accB 4203185 accB Clostridium perfringens ATCC 13124 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_695774.1 1505382 D 195103 CDS YP_695775.1 110799916 4203211 1505876..1506295 1 NC_008261.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1506295 fabZ 4203211 fabZ Clostridium perfringens ATCC 13124 (3R)-hydroxymyristoyl-ACP dehydratase YP_695775.1 1505876 D 195103 CDS YP_695776.1 110799124 4203054 1506307..1507659 1 NC_008261.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; biotin carboxylase 1507659 accC 4203054 accC Clostridium perfringens ATCC 13124 biotin carboxylase YP_695776.1 1506307 D 195103 CDS YP_695777.1 110798669 4202308 1507652..1508530 1 NC_008261.1 identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1508530 accD 4202308 accD Clostridium perfringens ATCC 13124 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_695777.1 1507652 D 195103 CDS YP_695778.1 110800769 4201755 1508523..1509338 1 NC_008261.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1509338 accA 4201755 accA Clostridium perfringens ATCC 13124 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_695778.1 1508523 D 195103 CDS YP_695779.1 110800247 4201834 complement(1509437..1509826) 1 NC_008261.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 1509826 4201834 CPF_1333 Clostridium perfringens ATCC 13124 PadR family transcriptional regulator YP_695779.1 1509437 R 195103 CDS YP_695780.1 110799353 4203091 1509910..1510164 1 NC_008261.1 hypothetical protein 1510164 4203091 CPF_1334 Clostridium perfringens ATCC 13124 hypothetical protein YP_695780.1 1509910 D 195103 CDS YP_695781.1 110798659 4202707 complement(1510222..1511040) 1 NC_008261.1 identified by match to protein family HMM PF01261; AP endonuclease 1511040 4202707 CPF_1335 Clostridium perfringens ATCC 13124 AP endonuclease YP_695781.1 1510222 R 195103 CDS YP_695782.1 110801071 4201745 1511257..1511967 1 NC_008261.1 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase B 1511967 rluB 4201745 rluB Clostridium perfringens ATCC 13124 ribosomal small subunit pseudouridine synthase B YP_695782.1 1511257 D 195103 CDS YP_695783.1 110800429 4203809 1511973..1512524 1 NC_008261.1 identified by similarity to GB:CAD47129.1; match to protein family HMM PF06962; hypothetical protein 1512524 4203809 CPF_1337 Clostridium perfringens ATCC 13124 hypothetical protein YP_695783.1 1511973 D 195103 CDS YP_695784.1 110799747 4203645 1512556..1513431 1 NC_008261.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 1513431 4203645 CPF_1338 Clostridium perfringens ATCC 13124 RpiR family transcriptional regulator YP_695784.1 1512556 D 195103 CDS YP_695785.1 110801219 4203296 1513648..1514868 1 NC_008261.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 1514868 4203296 CPF_1339 Clostridium perfringens ATCC 13124 hypothetical protein YP_695785.1 1513648 D 195103 CDS YP_695786.1 110800020 4203941 1514990..1515643 1 NC_008261.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1515643 cmk 4203941 cmk Clostridium perfringens ATCC 13124 cytidylate kinase YP_695786.1 1514990 D 195103 CDS YP_695787.1 110799385 4203260 1515645..1516493 1 NC_008261.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1516493 ispH 4203260 ispH Clostridium perfringens ATCC 13124 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_695787.1 1515645 D 195103 CDS YP_695788.1 110798763 4201879 1516603..1517397 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1517397 4201879 CPF_1342 Clostridium perfringens ATCC 13124 acetyltransferase YP_695788.1 1516603 D 195103 CDS YP_695789.1 110801020 4201365 complement(1517497..1517646) 1 NC_008261.1 identified by similarity to PIR:H97126; hypothetical protein 1517646 4201365 CPF_1343 Clostridium perfringens ATCC 13124 hypothetical protein YP_695789.1 1517497 R 195103 CDS YP_695790.1 110801185 4203106 1517783..1518355 1 NC_008261.1 hypothetical protein 1518355 4203106 CPF_1344 Clostridium perfringens ATCC 13124 hypothetical protein YP_695790.1 1517783 D 195103 CDS YP_695791.1 110800469 4201552 1518494..1518958 1 NC_008261.1 hypothetical protein 1518958 4201552 CPF_1345 Clostridium perfringens ATCC 13124 hypothetical protein YP_695791.1 1518494 D 195103 CDS YP_695792.1 110799202 4202394 complement(1519004..1519474) 1 NC_008261.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1519474 4202394 CPF_1346 Clostridium perfringens ATCC 13124 MerR family transcriptional regulator YP_695792.1 1519004 R 195103 CDS YP_695793.1 110799820 4203698 complement(1519658..1520050) 1 NC_008261.1 hypothetical protein 1520050 4203698 CPF_1347 Clostridium perfringens ATCC 13124 hypothetical protein YP_695793.1 1519658 R 195103 CDS YP_695794.1 110800845 4203937 1520410..1521390 1 NC_008261.1 identified by similarity to SP:P54965; match to protein family HMM PF02275; choloylglycine hydrolase 1521390 4203937 CPF_1348 Clostridium perfringens ATCC 13124 choloylglycine hydrolase YP_695794.1 1520410 D 195103 CDS YP_695795.1 110800579 4202345 1521576..1522919 1 NC_008261.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1522919 miaB 4202345 miaB Clostridium perfringens ATCC 13124 (dimethylallyl)adenosine tRNA methylthiotransferase YP_695795.1 1521576 D 195103 CDS YP_695796.1 110800109 4202414 1523375..1524988 1 NC_008261.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1524988 ppcA 4202414 ppcA Clostridium perfringens ATCC 13124 phosphoenolpyruvate carboxylase YP_695796.1 1523375 D 195103 CDS YP_695797.1 110800739 4201416 complement(1525273..1526067) 1 NC_008261.1 lipoprotein 1526067 4201416 CPF_1351 Clostridium perfringens ATCC 13124 lipoprotein YP_695797.1 1525273 R 195103 CDS YP_695798.1 110798878 4203413 1526666..1526773 1 NC_008261.1 hypothetical protein 1526773 4203413 CPF_1352 Clostridium perfringens ATCC 13124 hypothetical protein YP_695798.1 1526666 D 195103 CDS YP_695799.1 110799549 4202646 1527071..1527580 1 NC_008261.1 hypothetical protein 1527580 4202646 CPF_1353 Clostridium perfringens ATCC 13124 hypothetical protein YP_695799.1 1527071 D 195103 CDS YP_695800.1 110800864 4201286 1528044..1528631 1 NC_008261.1 hypothetical protein 1528631 4201286 CPF_1354 Clostridium perfringens ATCC 13124 hypothetical protein YP_695800.1 1528044 D 195103 CDS YP_695801.1 110799048 4201304 1528745..1529080 1 NC_008261.1 hypothetical protein 1529080 4201304 CPF_1355 Clostridium perfringens ATCC 13124 hypothetical protein YP_695801.1 1528745 D 195103 CDS YP_695802.1 110799617 4201491 1529447..1531681 1 NC_008261.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1531681 pfl 4201491 pfl Clostridium perfringens ATCC 13124 formate acetyltransferase YP_695802.1 1529447 D 195103 CDS YP_695803.1 110800676 4202519 1531761..1532468 1 NC_008261.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 1532468 pflA 4202519 pflA Clostridium perfringens ATCC 13124 pyruvate formate-lyase activating enzyme YP_695803.1 1531761 D 195103 CDS YP_695804.1 110799241 4201810 1532731..1535463 1 NC_008261.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1535463 mutS 4201810 mutS Clostridium perfringens ATCC 13124 DNA mismatch repair protein MutS YP_695804.1 1532731 D 195103 CDS YP_695805.1 110800749 4201601 1535490..1537514 1 NC_008261.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1537514 mutL 4201601 mutL Clostridium perfringens ATCC 13124 DNA mismatch repair protein YP_695805.1 1535490 D 195103 CDS YP_695806.1 110800286 4202869 1537532..1538464 1 NC_008261.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1538464 miaA 4202869 miaA Clostridium perfringens ATCC 13124 tRNA delta(2)-isopentenylpyrophosphate transferase YP_695806.1 1537532 D 195103 CDS YP_695807.1 110799438 4202553 1538508..1538750 1 NC_008261.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1538750 4202553 CPF_1361 Clostridium perfringens ATCC 13124 RNA chaperone Hfq YP_695807.1 1538508 D 195103 CDS YP_695808.1 110799745 4203176 1538855..1540135 1 NC_008261.1 identified by match to protein family HMM PF06838; aluminum resistance protein 1540135 4203176 CPF_1362 Clostridium perfringens ATCC 13124 aluminum resistance protein YP_695808.1 1538855 D 195103 CDS YP_695809.1 110801085 4202854 1540394..1541299 1 NC_008261.1 hypothetical protein 1541299 4202854 CPF_1363 Clostridium perfringens ATCC 13124 hypothetical protein YP_695809.1 1540394 D 195103 CDS YP_695810.1 110801397 4203478 complement(1541479..1542090) 1 NC_008261.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1542090 lexA 4203478 lexA Clostridium perfringens ATCC 13124 LexA repressor YP_695810.1 1541479 R 195103 CDS YP_695811.1 110800567 4201438 1542298..1542690 1 NC_008261.1 identified by similarity to GB:AAO35863.1; hypothetical protein 1542690 4201438 CPF_1365 Clostridium perfringens ATCC 13124 hypothetical protein YP_695811.1 1542298 D 195103 CDS YP_695812.1 110799420 4202535 complement(1542781..1544133) 1 NC_008261.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1544133 xerC 4202535 xerC Clostridium perfringens ATCC 13124 site-specific tyrosine recombinase XerC YP_695812.1 1542781 R 195103 CDS YP_695813.1 110798658 4202706 complement(1544649..1544867) 1 NC_008261.1 identified by similarity to PIR:G97219; hypothetical protein 1544867 4202706 CPF_1367 Clostridium perfringens ATCC 13124 hypothetical protein YP_695813.1 1544649 R 195103 CDS YP_695814.1 110799676 4201723 1544986..1546194 1 NC_008261.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1546194 tdcB 4201723 tdcB Clostridium perfringens ATCC 13124 threonine dehydratase YP_695814.1 1544986 D 195103 CDS YP_695815.1 110799034 4201290 complement(1546235..1547704) 1 NC_008261.1 identified by similarity to SP:P25737; match to protein family HMM PF00324; lysine-specific permease 1547704 4201290 CPF_1369 Clostridium perfringens ATCC 13124 lysine-specific permease YP_695815.1 1546235 R 195103 CDS YP_695816.1 110800194 4202971 1548207..1549427 1 NC_008261.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1549427 4202971 CPF_1370 Clostridium perfringens ATCC 13124 sodium:dicarboxylate symporter family protein YP_695816.1 1548207 D 195103 CDS YP_695817.1 110799558 4203493 complement(1549462..1549794) 1 NC_008261.1 hypothetical protein 1549794 4203493 CPF_1371 Clostridium perfringens ATCC 13124 hypothetical protein YP_695817.1 1549462 R 195103 CDS YP_695818.1 110799244 4201813 1550070..1550714 1 NC_008261.1 identified by similarity to GB:AAV43180.1; match to protein family HMM PF02588; hypothetical protein 1550714 4201813 CPF_1372 Clostridium perfringens ATCC 13124 hypothetical protein YP_695818.1 1550070 D 195103 CDS YP_695819.1 110800795 4202231 complement(1550747..1550965) 1 NC_008261.1 hypothetical protein 1550965 4202231 CPF_1373 Clostridium perfringens ATCC 13124 hypothetical protein YP_695819.1 1550747 R 195103 CDS YP_695820.1 110800575 4202341 complement(1551028..1551411) 1 NC_008261.1 mutator mutT-like protein 1551411 4202341 CPF_1374 Clostridium perfringens ATCC 13124 mutator mutT-like protein YP_695820.1 1551028 R 195103 CDS YP_695821.1 110799920 4203215 complement(1551763..1552497) 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; haloacid dehalogenase 1552497 4203215 CPF_1375 Clostridium perfringens ATCC 13124 haloacid dehalogenase YP_695821.1 1551763 R 195103 CDS YP_695822.1 110801014 4201359 1552668..1553204 1 NC_008261.1 identified by similarity to GB:AAM24193.1; hypothetical protein 1553204 4201359 CPF_1376 Clostridium perfringens ATCC 13124 hypothetical protein YP_695822.1 1552668 D 195103 CDS YP_695823.1 110801105 4203280 complement(1553235..1553987) 1 NC_008261.1 identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1553987 xth 4203280 xth Clostridium perfringens ATCC 13124 exodeoxyribonuclease III YP_695823.1 1553235 R 195103 CDS YP_695824.1 110799158 4202839 1554219..1554446 1 NC_008261.1 identified by similarity to PDB:1Y9W; acetyltransferase domain-containing protein 1554446 4202839 CPF_1378 Clostridium perfringens ATCC 13124 acetyltransferase domain-containing protein YP_695824.1 1554219 D 195103 CDS YP_695825.1 110799965 4203747 complement(1554567..1554989) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1554989 4203747 CPF_1379 Clostridium perfringens ATCC 13124 acetyltransferase YP_695825.1 1554567 R 195103 CDS YP_695826.1 110800497 4203352 complement(1555038..1555154) 1 NC_008261.1 hypothetical protein 1555154 4203352 CPF_1380 Clostridium perfringens ATCC 13124 hypothetical protein YP_695826.1 1555038 R 195103 CDS YP_695827.1 110801266 4201573 complement(1555312..1555890) 1 NC_008261.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1555890 pyrE 4201573 pyrE Clostridium perfringens ATCC 13124 orotate phosphoribosyltransferase YP_695827.1 1555312 R 195103 CDS YP_695828.1 110799177 4202917 complement(1556039..1556938) 1 NC_008261.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1556938 pyrD 4202917 pyrD Clostridium perfringens ATCC 13124 dihydroorotate dehydrogenase 1B YP_695828.1 1556039 R 195103 CDS YP_695829.1 110799988 4201258 complement(1556958..1557698) 1 NC_008261.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 1557698 pyrK 4201258 pyrK Clostridium perfringens ATCC 13124 dihydroorotate dehydrogenase electron transfer subunit YP_695829.1 1556958 R 195103 CDS YP_695830.1 110800161 4203558 complement(1557723..1558586) 1 NC_008261.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1558586 pyrF 4203558 pyrF Clostridium perfringens ATCC 13124 orotidine 5'-phosphate decarboxylase YP_695830.1 1557723 R 195103 CDS YP_695831.1 110800858 4201280 complement(1558596..1559795) 1 NC_008261.1 identified by similarity to SP:P48795; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type 1559795 pyrC 4201280 pyrC Clostridium perfringens ATCC 13124 dihydroorotase, multifunctional complex type YP_695831.1 1558596 R 195103 CDS YP_695832.1 110799591 4202689 complement(1559980..1560903) 1 NC_008261.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 1560903 pyrB 4202689 pyrB Clostridium perfringens ATCC 13124 aspartate carbamoyltransferase YP_695832.1 1559980 R 195103 CDS YP_695833.1 110798952 4202183 complement(1561294..1562073) 1 NC_008261.1 identified by similarity to SP:P37322; beta-lactamase 1562073 4202183 CPF_1388 Clostridium perfringens ATCC 13124 beta-lactamase YP_695833.1 1561294 R 195103 CDS YP_695834.1 110799728 4203159 complement(1562304..1563401) 1 NC_008261.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483; phosphofructokinase 1563401 4203159 CPF_1389 Clostridium perfringens ATCC 13124 phosphofructokinase YP_695834.1 1562304 R 195103 CDS YP_695835.1 110799480 4202324 complement(1563614..1564528) 1 NC_008261.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1564528 4202324 CPF_1390 Clostridium perfringens ATCC 13124 undecaprenyl pyrophosphate phosphatase YP_695835.1 1563614 R 195103 CDS YP_695836.1 110800327 4202091 complement(1564788..1565765) 1 NC_008261.1 identified by similarity to SP:Q59935; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1565765 manA 4202091 manA Clostridium perfringens ATCC 13124 mannose-6-phosphate isomerase YP_695836.1 1564788 R 195103 CDS YP_695837.1 110800848 4201270 1566016..1567371 1 NC_008261.1 UDP-N-acetylmuramyl tripeptide synthetase MurC-like protein 1567371 4201270 CPF_1392 Clostridium perfringens ATCC 13124 UDP-N-acetylmuramyl tripeptide synthetase MurC-like protein YP_695837.1 1566016 D 195103 CDS YP_695838.1 110799139 4200970 1567389..1568120 1 NC_008261.1 identified by match to protein family HMM PF07685; CobB/CobQ family glutamine amidotransferase 1568120 4200970 CPF_1393 Clostridium perfringens ATCC 13124 CobB/CobQ family glutamine amidotransferase YP_695838.1 1567389 D 195103 CDS YP_695839.1 110800641 4201999 1568360..1568548 1 NC_008261.1 hypothetical protein 1568548 4201999 CPF_1394 Clostridium perfringens ATCC 13124 hypothetical protein YP_695839.1 1568360 D 195103 CDS YP_695840.1 110801274 4201581 1568567..1568764 1 NC_008261.1 hypothetical protein 1568764 4201581 CPF_1395 Clostridium perfringens ATCC 13124 hypothetical protein YP_695840.1 1568567 D 195103 CDS YP_695841.1 110800971 4202290 complement(1568823..1569725) 1 NC_008261.1 identified by similarity to GB:AAO35411.1; hypothetical protein 1569725 4202290 CPF_1396 Clostridium perfringens ATCC 13124 hypothetical protein YP_695841.1 1568823 R 195103 CDS YP_695842.1 110799778 4203521 1569982..1571244 1 NC_008261.1 von Willebrand factor A 1571244 4203521 CPF_1397 Clostridium perfringens ATCC 13124 von Willebrand factor A YP_695842.1 1569982 D 195103 CDS YP_695843.1 110799010 4201870 complement(1571291..1572067) 1 NC_008261.1 identified by match to protein family HMM PF06541; hypothetical protein 1572067 4201870 CPF_1398 Clostridium perfringens ATCC 13124 hypothetical protein YP_695843.1 1571291 R 195103 CDS YP_695844.1 110801310 4201911 complement(1572117..1572527) 1 NC_008261.1 hypothetical protein 1572527 4201911 CPF_1399 Clostridium perfringens ATCC 13124 hypothetical protein YP_695844.1 1572117 R 195103 CDS YP_695845.1 110800640 4201998 complement(1572642..1574138) 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 1574138 4201998 CPF_1400 Clostridium perfringens ATCC 13124 amino acid permease YP_695845.1 1572642 R 195103 CDS YP_695846.1 110799802 4202668 1574452..1575030 1 NC_008261.1 identified by similarity to PIR:AF1870; hypothetical protein 1575030 4202668 CPF_1401 Clostridium perfringens ATCC 13124 hypothetical protein YP_695846.1 1574452 D 195103 CDS YP_695847.1 110798994 4201854 complement(1575064..1576500) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1576500 4201854 CPF_1402 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_695847.1 1575064 R 195103 CDS YP_695848.1 110800369 4201978 complement(1576487..1577164) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1577164 4201978 CPF_1403 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_695848.1 1576487 R 195103 CDS YP_695849.1 110799367 4203632 complement(1577145..1577300) 1 NC_008261.1 hypothetical protein 1577300 4203632 CPF_1404 Clostridium perfringens ATCC 13124 hypothetical protein YP_695849.1 1577145 R 195103 CDS YP_695850.1 110798600 4201245 complement(1577411..1578673) 1 NC_008261.1 identified by similarity to GB:AAP78125.1; hypothetical protein 1578673 4201245 CPF_1405 Clostridium perfringens ATCC 13124 hypothetical protein YP_695850.1 1577411 R 195103 CDS YP_695851.1 110800813 4201083 complement(1578682..1581609) 1 NC_008261.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 1581609 4201083 CPF_1406 Clostridium perfringens ATCC 13124 CoA-substrate-specific enzyme activase YP_695851.1 1578682 R 195103 CDS YP_695852.1 110801217 4203294 complement(1581901..1583889) 1 NC_008261.1 identified by match to protein family HMM PF04055; hypothetical protein 1583889 4203294 CPF_1407 Clostridium perfringens ATCC 13124 hypothetical protein YP_695852.1 1581901 R 195103 CDS YP_695853.1 110799977 4203760 complement(1584089..1586434) 1 NC_008261.1 identified by similarity to SP:P26659; match to protein family HMM PF06733; ATP-dependent helicase 1586434 4203760 CPF_1408 Clostridium perfringens ATCC 13124 ATP-dependent helicase YP_695853.1 1584089 R 195103 CDS YP_695854.1 110799381 4203256 complement(1586536..1587918) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1587918 4203256 CPF_1409 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_695854.1 1586536 R 195103 CDS YP_695855.1 110800568 4201439 complement(1588092..1589198) 1 NC_008261.1 identified by similarity to GB:AAF72522.1; similarity to GB:BAD47679.1; MdsC protein 1589198 4201439 CPF_1410 Clostridium perfringens ATCC 13124 MdsC protein YP_695855.1 1588092 R 195103 CDS YP_695856.1 110801009 4201354 complement(1589200..1590111) 1 NC_008261.1 identified by similarity to GB:BAD50849.1; hypothetical protein 1590111 4201354 CPF_1411 Clostridium perfringens ATCC 13124 hypothetical protein YP_695856.1 1589200 R 195103 CDS YP_695857.1 110798587 4201232 1590375..1592981 1 NC_008261.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P 1592981 4201232 CPF_1412 Clostridium perfringens ATCC 13124 ATPase P YP_695857.1 1590375 D 195103 CDS YP_695858.1 110800053 4203721 complement(1593026..1594642) 1 NC_008261.1 identified by similarity to SP:Q00758; match to protein family HMM PF01943; stage V sporulation protein B 1594642 spoVB 4203721 spoVB Clostridium perfringens ATCC 13124 stage V sporulation protein B YP_695858.1 1593026 R 195103 CDS YP_695859.1 110800940 4202123 complement(1594664..1595638) 1 NC_008261.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1595638 4202123 CPF_1414 Clostridium perfringens ATCC 13124 RluA family pseudouridine synthase YP_695859.1 1594664 R 195103 CDS YP_695860.1 110799653 4202577 complement(1595698..1596894) 1 NC_008261.1 identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1596894 4202577 CPF_1415 Clostridium perfringens ATCC 13124 amidohydrolase YP_695860.1 1595698 R 195103 CDS YP_695861.1 110799163 4202844 complement(1597100..1599094) 1 NC_008261.1 identified by similarity to SP:Q53727; match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 1599094 4202844 CPF_1416 Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase PcrA YP_695861.1 1597100 R 195103 CDS YP_695862.1 110799666 4202590 1599247..1600719 1 NC_008261.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1600719 4202590 CPF_1417 Clostridium perfringens ATCC 13124 nicotinate phosphoribosyltransferase YP_695862.1 1599247 D 195103 CDS YP_695863.1 110799027 4202277 complement(1600773..1600949) 1 NC_008261.1 hypothetical protein 1600949 4202277 CPF_1418 Clostridium perfringens ATCC 13124 hypothetical protein YP_695863.1 1600773 R 195103 CDS YP_695864.1 110800964 4202283 complement(1600979..1601314) 1 NC_008261.1 hypothetical protein 1601314 4202283 CPF_1419 Clostridium perfringens ATCC 13124 hypothetical protein YP_695864.1 1600979 R 195103 CDS YP_695865.1 110800367 4201976 1601933..1602352 1 NC_008261.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1602352 fur-3 4201976 fur-3 Clostridium perfringens ATCC 13124 FUR family transcriptional regulator YP_695865.1 1601933 D 195103 CDS YP_695866.1 110799340 4202203 complement(1602430..1603827) 1 NC_008261.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1603827 4202203 CPF_1421 Clostridium perfringens ATCC 13124 dipeptidase PepV YP_695866.1 1602430 R 195103 CDS YP_695867.1 110798566 4202712 complement(1604016..1605326) 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; uracil-xanthine permease 1605326 4202712 CPF_1422 Clostridium perfringens ATCC 13124 uracil-xanthine permease YP_695867.1 1604016 R 195103 CDS YP_695868.1 110801292 4201599 complement(1605611..1606021) 1 NC_008261.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 1606021 4201599 CPF_1423 Clostridium perfringens ATCC 13124 thioesterase YP_695868.1 1605611 R 195103 CDS YP_695869.1 110800231 4202755 complement(1606212..1606967) 1 NC_008261.1 identified by similarity to SP:P49938; match to protein family HMM PF00005; iron(III) ABC transporter ATP-binding protein 1606967 4202755 CPF_1424 Clostridium perfringens ATCC 13124 iron(III) ABC transporter ATP-binding protein YP_695869.1 1606212 R 195103 CDS YP_695870.1 110801011 4201356 complement(1606973..1607980) 1 NC_008261.1 identified by similarity to SP:Q56992; match to protein family HMM PF01032; iron(III) ABC transporter permease 1607980 4201356 CPF_1425 Clostridium perfringens ATCC 13124 iron(III) ABC transporter permease YP_695870.1 1606973 R 195103 CDS YP_695871.1 110798602 4201247 complement(1608068..1609066) 1 NC_008261.1 identified by match to protein family HMM PF01497; iron(III) ABC transporter iron(III)-binding protein 1609066 4201247 CPF_1426 Clostridium perfringens ATCC 13124 iron(III) ABC transporter iron(III)-binding protein YP_695871.1 1608068 R 195103 CDS YP_695872.1 110800622 4202252 complement(1609079..1609843) 1 NC_008261.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1609843 cobK 4202252 cobK Clostridium perfringens ATCC 13124 cobalt-precorrin-6x reductase YP_695872.1 1609079 R 195103 CDS YP_695873.1 110801387 4203468 complement(1609862..1610584) 1 NC_008261.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 1610584 cobJ 4203468 cobJ Clostridium perfringens ATCC 13124 precorrin-3B C(17)-methyltransferase YP_695873.1 1609862 R 195103 CDS YP_695874.1 110798929 4200993 complement(1610739..1611737) 1 NC_008261.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1611737 cbiG 4200993 cbiG Clostridium perfringens ATCC 13124 cobalamin biosynthesis protein CbiG YP_695874.1 1610739 R 195103 CDS YP_695875.1 110799723 4201207 complement(1611740..1612495) 1 NC_008261.1 identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 1612495 cobM 4201207 cobM Clostridium perfringens ATCC 13124 precorrin-4 C(11)-methyltransferase YP_695875.1 1611740 R 195103 CDS YP_695876.1 110800534 4201190 complement(1612546..1613208) 1 NC_008261.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1613208 cobI 4201190 cobI Clostridium perfringens ATCC 13124 cobalt-precorrin-2 C(20)-methyltransferase YP_695876.1 1612546 R 195103 CDS YP_695877.1 110801395 4203476 complement(1613208..1613801) 1 NC_008261.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase subunit CbiT 1613801 cbiT 4203476 cbiT Clostridium perfringens ATCC 13124 precorrin-6Y C5,15-methyltransferase subunit CbiT YP_695877.1 1613208 R 195103 CDS YP_695878.1 110798623 4202750 complement(1613821..1614432) 1 NC_008261.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6y C5,15-methyltransferase (decarboxylating) 1614432 cbiE 4202750 cbiE Clostridium perfringens ATCC 13124 precorrin-6y C5,15-methyltransferase (decarboxylating) YP_695878.1 1613821 R 195103 CDS YP_695879.1 110799949 4203789 complement(1614460..1615557) 1 NC_008261.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1615557 cbiD 4203789 cbiD Clostridium perfringens ATCC 13124 cobalt-precorrin-6A synthase YP_695879.1 1614460 R 195103 CDS YP_695880.1 110801169 4201029 complement(1615575..1616204) 1 NC_008261.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 1616204 cbiC 4201029 cbiC Clostridium perfringens ATCC 13124 precorrin-8X methylmutase YP_695880.1 1615575 R 195103 CDS YP_695881.1 110799043 4201299 complement(1616204..1617046) 1 NC_008261.1 identified by similarity to SP:Q05592; match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase 1617046 cbiK 4201299 cbiK Clostridium perfringens ATCC 13124 sirohydrochlorin cobaltochelatase YP_695881.1 1616204 R 195103 CDS YP_695882.1 110800183 4203677 1617566..1618798 1 NC_008261.1 identified by match to protein family HMM PF06725; hypothetical protein 1618798 4203677 CPF_1437 Clostridium perfringens ATCC 13124 hypothetical protein YP_695882.1 1617566 D 195103 CDS YP_695883.1 110801034 4201946 complement(1618818..1619126) 1 NC_008261.1 hypothetical protein 1619126 4201946 CPF_1438 Clostridium perfringens ATCC 13124 hypothetical protein YP_695883.1 1618818 R 195103 CDS YP_695884.1 110801032 4201944 complement(1619394..1622543) 1 NC_008261.1 identified by match to protein family HMM PF00018; match to protein family HMM PF01832; match to protein family HMM PF06347; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 1622543 entD 4201944 entD Clostridium perfringens ATCC 13124 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein YP_695884.1 1619394 R 195103 CDS YP_695885.1 110799896 4203912 complement(1622926..1623927) 1 NC_008261.1 identified by similarity to PIR:F97215; hypothetical protein 1623927 4203912 CPF_1440 Clostridium perfringens ATCC 13124 hypothetical protein YP_695885.1 1622926 R 195103 CDS YP_695886.1 110800566 4201437 complement(1623961..1624653) 1 NC_008261.1 hypothetical protein 1624653 4201437 CPF_1441 Clostridium perfringens ATCC 13124 hypothetical protein YP_695886.1 1623961 R 195103 CDS YP_695887.1 110800885 4202790 complement(1625168..1628173) 1 NC_008261.1 identified by similarity to SP:P26831; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07555; hyaluronidase 1628173 4202790 CPF_1442 Clostridium perfringens ATCC 13124 hyaluronidase YP_695887.1 1625168 R 195103 CDS YP_695888.1 110799566 4203501 complement(1628283..1628381) 1 NC_008261.1 hypothetical protein 1628381 4203501 CPF_1443 Clostridium perfringens ATCC 13124 hypothetical protein YP_695888.1 1628283 R 195103 CDS YP_695889.1 110801179 4203100 complement(1629829..1630512) 1 NC_008261.1 identified by similarity to SP:P28764; match to protein family HMM PF00081; match to protein family HMM PF02777; Mn/Fe superoxide dismutase 1630512 sodF 4203100 sodF Clostridium perfringens ATCC 13124 Mn/Fe superoxide dismutase YP_695889.1 1629829 R 195103 CDS YP_695890.1 110799204 4202396 complement(1630574..1631185) 1 NC_008261.1 hypothetical protein 1631185 4202396 CPF_1447 Clostridium perfringens ATCC 13124 hypothetical protein YP_695890.1 1630574 R 195103 CDS YP_695891.1 110799812 4203690 1631495..1632943 1 NC_008261.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1632943 4203690 CPF_1448 Clostridium perfringens ATCC 13124 EmrB/QacA family drug resistance transporter YP_695891.1 1631495 D 195103 CDS YP_695892.1 110799280 4203076 complement(1633003..1633167) 1 NC_008261.1 hypothetical protein 1633167 4203076 CPF_1449 Clostridium perfringens ATCC 13124 hypothetical protein YP_695892.1 1633003 R 195103 CDS YP_695893.1 110799861 4203448 complement(1633198..1634535) 1 NC_008261.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1634535 mgtE 4203448 mgtE Clostridium perfringens ATCC 13124 magnesium transporter YP_695893.1 1633198 R 195103 CDS YP_695894.1 110800807 4201077 complement(1635096..1635869) 1 NC_008261.1 identified by match to protein family HMM PF02698; hypothetical protein 1635869 4201077 CPF_1451 Clostridium perfringens ATCC 13124 hypothetical protein YP_695894.1 1635096 R 195103 CDS YP_695895.1 110798743 4200943 1636132..1636341 1 NC_008261.1 identified by similarity to SP:P51777; similarity to SP:Q45098; match to protein family HMM PF00313; cold shock protein 1636341 4200943 CPF_1452 Clostridium perfringens ATCC 13124 cold shock protein YP_695895.1 1636132 D 195103 CDS YP_695896.1 110799508 4202061 complement(1636494..1636700) 1 NC_008261.1 identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein 1636700 4202061 CPF_1453 Clostridium perfringens ATCC 13124 heavy metal-binding domain-containing protein YP_695896.1 1636494 R 195103 CDS YP_695897.1 110800943 4202126 complement(1636747..1637217) 1 NC_008261.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1637217 4202126 CPF_1454 Clostridium perfringens ATCC 13124 ErfK/YbiS/YcfS/YnhG family protein YP_695897.1 1636747 R 195103 CDS YP_695898.1 110798876 4203411 complement(1637336..1638307) 1 NC_008261.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; oxidoreductase 1638307 4203411 CPF_1455 Clostridium perfringens ATCC 13124 oxidoreductase YP_695898.1 1637336 R 195103 CDS YP_695899.1 110799663 4202587 complement(1638497..1641052) 1 NC_008261.1 identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; hypothetical protein 1641052 4202587 CPF_1456 Clostridium perfringens ATCC 13124 hypothetical protein YP_695899.1 1638497 R 195103 CDS YP_695900.2 261876149 4201967 complement(1641627..1642595) 1 NC_008261.1 identified by similarity to GB:AAK15004.1; hypothetical protein 1642595 4201967 CPF_1457 Clostridium perfringens ATCC 13124 hypothetical protein YP_695900.2 1641627 R 195103 CDS YP_695901.1 110799148 4202829 complement(1642704..1643195) 1 NC_008261.1 hypothetical protein 1643195 4202829 CPF_1458 Clostridium perfringens ATCC 13124 hypothetical protein YP_695901.1 1642704 R 195103 CDS YP_695902.1 110798624 4201677 complement(1643416..1644609) 1 NC_008261.1 hypothetical protein 1644609 4201677 CPF_1459 Clostridium perfringens ATCC 13124 hypothetical protein YP_695902.1 1643416 R 195103 CDS YP_695903.1 110799429 4202544 complement(1644619..1645602) 1 NC_008261.1 hypothetical protein 1645602 4202544 CPF_1460 Clostridium perfringens ATCC 13124 hypothetical protein YP_695903.1 1644619 R 195103 CDS YP_695904.1 110799477 4202321 complement(1645992..1646714) 1 NC_008261.1 identified by match to protein family HMM PF06539; hypothetical protein 1646714 4202321 CPF_1461 Clostridium perfringens ATCC 13124 hypothetical protein YP_695904.1 1645992 R 195103 CDS YP_695905.1 110799783 4203526 complement(1646894..1647232) 1 NC_008261.1 hypothetical protein 1647232 4203526 CPF_1462 Clostridium perfringens ATCC 13124 hypothetical protein YP_695905.1 1646894 R 195103 CDS YP_695906.1 110798955 4201368 complement(1647256..1648662) 1 NC_008261.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1648662 gltA 4201368 gltA Clostridium perfringens ATCC 13124 oxidoreductase YP_695906.1 1647256 R 195103 CDS YP_695907.1 110800611 4203585 complement(1648655..1649554) 1 NC_008261.1 identified by match to protein family HMM PF00175; ferredoxin-NADP reductase 1649554 4203585 CPF_1464 Clostridium perfringens ATCC 13124 ferredoxin-NADP reductase YP_695907.1 1648655 R 195103 CDS YP_695908.1 110798723 4202420 complement(1649726..1650892) 1 NC_008261.1 identified by similarity to SP:P13604; match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase 1650892 adh1 4202420 adh1 Clostridium perfringens ATCC 13124 NADPH-dependent butanol dehydrogenase YP_695908.1 1649726 R 195103 CDS YP_695909.1 110801108 4203283 complement(1651004..1652455) 1 NC_008261.1 identified by similarity to SP:P37966; lipoprotein 1652455 4203283 CPF_1466 Clostridium perfringens ATCC 13124 lipoprotein YP_695909.1 1651004 R 195103 CDS YP_695910.1 110799542 4202639 1652905..1655748 1 NC_008261.1 identified by match to protein family HMM PF00018; enterotoxin 1655748 4202639 CPF_1467 Clostridium perfringens ATCC 13124 enterotoxin YP_695910.1 1652905 D 195103 CDS YP_695911.1 110799771 4203514 complement(1656030..1656944) 1 NC_008261.1 identified by similarity to SP:P50191; hypothetical protein 1656944 4203514 CPF_1468 Clostridium perfringens ATCC 13124 hypothetical protein YP_695911.1 1656030 R 195103 CDS YP_695912.1 110798590 4201235 complement(1657242..1657862) 1 NC_008261.1 identified by match to protein family HMM PF07553; hypothetical protein 1657862 4201235 CPF_1469 Clostridium perfringens ATCC 13124 hypothetical protein YP_695912.1 1657242 R 195103 CDS YP_695913.1 110801063 4201737 complement(1658115..1658735) 1 NC_008261.1 hypothetical protein 1658735 4201737 CPF_1470 Clostridium perfringens ATCC 13124 hypothetical protein YP_695913.1 1658115 R 195103 CDS YP_695914.1 110801097 4202866 1659824..1660288 1 NC_008261.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 1660288 greA 4202866 greA Clostridium perfringens ATCC 13124 transcription elongation factor GreA YP_695914.1 1659824 D 195103 CDS YP_695915.1 110799557 4203492 complement(1660597..1665363) 1 NC_008261.1 identified by similarity to GB:AAM55479.1; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07554; alpha-N-acetylgalactosaminidase 1665363 4203492 CPF_1472 Clostridium perfringens ATCC 13124 alpha-N-acetylgalactosaminidase YP_695915.1 1660597 R 195103 CDS YP_695916.1 110798912 4202143 1665622..1667385 1 NC_008261.1 hypothetical protein 1667385 4202143 CPF_1473 Clostridium perfringens ATCC 13124 hypothetical protein YP_695916.1 1665622 D 195103 CDS YP_695917.1 110798593 4201238 complement(1667508..1671575) 1 NC_008261.1 identified by similarity to SP:P26257; match to protein family HMM PF00404; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF07532; beta-galactosidase 1671575 lacZ 4201238 lacZ Clostridium perfringens ATCC 13124 beta-galactosidase YP_695917.1 1667508 R 195103 CDS YP_695918.1 110799822 4203700 complement(1671824..1673158) 1 NC_008261.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 1673158 4203700 CPF_1475 Clostridium perfringens ATCC 13124 amidohydrolase YP_695918.1 1671824 R 195103 CDS YP_695919.1 110799205 4202397 complement(1673307..1675013) 1 NC_008261.1 identified by similarity to SP:P39761; match to protein family HMM PF01979; adenine deaminase 1675013 4202397 CPF_1476 Clostridium perfringens ATCC 13124 adenine deaminase YP_695919.1 1673307 R 195103 CDS YP_695920.1 110800354 4202021 complement(1675029..1676075) 1 NC_008261.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 1676075 4202021 CPF_1477 Clostridium perfringens ATCC 13124 ABC transporter substrate-binding protein YP_695920.1 1675029 R 195103 CDS YP_695921.1 110799006 4201866 complement(1676115..1677146) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1677146 4201866 CPF_1478 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_695921.1 1676115 R 195103 CDS YP_695922.1 110798708 4201314 complement(1677182..1677964) 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 1677964 4201314 CPF_1479 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695922.1 1677182 R 195103 CDS YP_695923.1 110799330 4202193 complement(1677966..1678796) 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 1678796 4202193 CPF_1480 Clostridium perfringens ATCC 13124 ABC transporter permease YP_695923.1 1677966 R 195103 CDS YP_695924.1 110800689 4202532 complement(1679184..1680332) 1 NC_008261.1 identified by similarity to GB:BAB80980.1; hypothetical protein 1680332 4202532 CPF_1481 Clostridium perfringens ATCC 13124 hypothetical protein YP_695924.1 1679184 R 195103 CDS YP_695925.1 110801357 4203241 complement(1680531..1681496) 1 NC_008261.1 identified by match to protein family HMM PF01207; dihydrouridine synthase 1681496 4203241 CPF_1482 Clostridium perfringens ATCC 13124 dihydrouridine synthase YP_695925.1 1680531 R 195103 CDS YP_695926.2 261876166 4202266 complement(1681600..1682970) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1682970 4202266 CPF_1483 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_695926.2 1681600 R 195103 CDS YP_695927.1 110799657 4202581 complement(1683323..1683664) 1 NC_008261.1 identified by similarity to GB:CAA66892.1; hypothetical protein 1683664 4202581 CPF_1484 Clostridium perfringens ATCC 13124 hypothetical protein YP_695927.1 1683323 R 195103 CDS YP_695928.1 110799062 4202565 complement(1683676..1685592) 1 NC_008261.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 1685592 4202565 CPF_1485 Clostridium perfringens ATCC 13124 OPT family oligopeptide transporter YP_695928.1 1683676 R 195103 CDS YP_695929.1 110800464 4201547 complement(1685589..1685825) 1 NC_008261.1 hypothetical protein 1685825 4201547 CPF_1486 Clostridium perfringens ATCC 13124 hypothetical protein YP_695929.1 1685589 R 195103 CDS YP_695930.1 110801141 4201001 complement(1686237..1689755) 1 NC_008261.1 identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167; hyaluronoglucosaminidase 1689755 4201001 CPF_1487 Clostridium perfringens ATCC 13124 hyaluronoglucosaminidase YP_695930.1 1686237 R 195103 CDS YP_695931.1 110800629 4202259 complement(1689987..1690139) 1 NC_008261.1 hypothetical protein 1690139 4202259 CPF_1488 Clostridium perfringens ATCC 13124 hypothetical protein YP_695931.1 1689987 R 195103 CDS YP_695932.1 110798644 4202692 complement(1690407..1695470) 1 NC_008261.1 identified by match to protein family HMM PF00754; match to protein family HMM PF07554; F5/8 type C domain-containing protein 1695470 4202692 CPF_1489 Clostridium perfringens ATCC 13124 F5/8 type C domain-containing protein YP_695932.1 1690407 R 195103 CDS YP_695933.1 110800888 4202793 complement(1695920..1697308) 1 NC_008261.1 identified by similarity to SP:P23054; match to protein family HMM PF07690; tetracycline resistance protein 1697308 4202793 CPF_1490 Clostridium perfringens ATCC 13124 tetracycline resistance protein YP_695933.1 1695920 R 195103 CDS YP_695934.1 110800255 4201842 1697728..1698477 1 NC_008261.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1698477 4201842 CPF_1491 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_695934.1 1697728 D 195103 CDS YP_695935.1 110799612 4201486 complement(1698591..1699772) 1 NC_008261.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter 1699772 4201486 CPF_1492 Clostridium perfringens ATCC 13124 NupC family nucleoside transporter YP_695935.1 1698591 R 195103 CDS YP_695936.1 110798979 4201102 complement(1700151..1702049) 1 NC_008261.1 identified by match to protein family HMM PF05976; hypothetical protein 1702049 4201102 CPF_1493 Clostridium perfringens ATCC 13124 hypothetical protein YP_695936.1 1700151 R 195103 CDS YP_695937.1 110800452 4202372 complement(1702097..1702522) 1 NC_008261.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1702522 4202372 CPF_1494 Clostridium perfringens ATCC 13124 MarR family transcriptional regulator YP_695937.1 1702097 R 195103 CDS YP_695938.1 110800618 4202248 complement(1702642..1703739) 1 NC_008261.1 identified by match to protein family HMM PF03572; S41 family peptidase 1703739 4202248 CPF_1495 Clostridium perfringens ATCC 13124 S41 family peptidase YP_695938.1 1702642 R 195103 CDS YP_695939.1 110799801 4202667 1704071..1704523 1 NC_008261.1 identified by match to protein family HMM PF06496; hypothetical protein 1704523 4202667 CPF_1496 Clostridium perfringens ATCC 13124 hypothetical protein YP_695939.1 1704071 D 195103 CDS YP_695940.1 110798968 4201381 complement(1704972..1707809) 1 NC_008261.1 identified by match to protein family HMM PF02518; ATPase 1707809 4201381 CPF_1497 Clostridium perfringens ATCC 13124 ATPase YP_695940.1 1704972 R 195103 CDS YP_695941.1 110801042 4202594 complement(1709391..1709969) 1 NC_008261.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1709969 xpt 4202594 xpt Clostridium perfringens ATCC 13124 xanthine phosphoribosyltransferase YP_695941.1 1709391 R 195103 CDS YP_695942.1 110799536 4202633 1710142..1711131 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1711131 4202633 CPF_1499 Clostridium perfringens ATCC 13124 hypothetical protein YP_695942.1 1710142 D 195103 CDS YP_695943.1 110798925 4200989 complement(1711478..1712086) 1 NC_008261.1 lipoprotein 1712086 4200989 CPF_1500 Clostridium perfringens ATCC 13124 lipoprotein YP_695943.1 1711478 R 195103 CDS YP_695944.1 110800123 4203890 complement(1712535..1713005) 1 NC_008261.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1713005 smpB 4203890 smpB Clostridium perfringens ATCC 13124 SsrA-binding protein YP_695944.1 1712535 R 195103 CDS YP_695945.1 110800238 4202762 complement(1713602..1715857) 1 NC_008261.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 1715857 rnr 4202762 rnr Clostridium perfringens ATCC 13124 ribonuclease R YP_695945.1 1713602 R 195103 CDS YP_695946.1 110800235 4202759 complement(1716146..1716376) 1 NC_008261.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 1716376 secG 4202759 secG Clostridium perfringens ATCC 13124 preprotein translocase subunit SecG YP_695946.1 1716146 R 195103 CDS YP_695947.1 110800552 4202904 complement(1716567..1717124) 1 NC_008261.1 identified by similarity to GB:CAB12841.1; tryptophan transport protein 1717124 4202904 CPF_1504 Clostridium perfringens ATCC 13124 tryptophan transport protein YP_695947.1 1716567 R 195103 CDS YP_695948.1 110799305 4203141 complement(1718717..1720012) 1 NC_008261.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1720012 eno 4203141 eno Clostridium perfringens ATCC 13124 phosphopyruvate hydratase YP_695948.1 1718717 R 195103 CDS YP_695949.1 110799926 4201450 complement(1720392..1720532) 1 NC_008261.1 hypothetical protein 1720532 4201450 CPF_1506 Clostridium perfringens ATCC 13124 hypothetical protein YP_695949.1 1720392 R 195103 CDS YP_695950.1 110800977 4202296 complement(1720740..1722197) 1 NC_008261.1 identified by match to protein family HMM PF00324; glutamate:gamma-aminobutyrate antiporter family protein 1722197 4202296 CPF_1507 Clostridium perfringens ATCC 13124 glutamate:gamma-aminobutyrate antiporter family protein YP_695950.1 1720740 R 195103 CDS YP_695951.1 110801419 4203015 complement(1722763..1724301) 1 NC_008261.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1724301 gpmI 4203015 gpmI Clostridium perfringens ATCC 13124 phosphoglyceromutase YP_695951.1 1722763 R 195103 CDS YP_695952.1 110799000 4201860 complement(1724426..1725172) 1 NC_008261.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1725172 tpiA 4201860 tpiA Clostridium perfringens ATCC 13124 triosephosphate isomerase YP_695952.1 1724426 R 195103 CDS YP_695953.1 110799767 4203510 complement(1725416..1726609) 1 NC_008261.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1726609 pgk 4203510 pgk Clostridium perfringens ATCC 13124 phosphoglycerate kinase YP_695953.1 1725416 R 195103 CDS YP_695954.1 110800223 4202942 complement(1726753..1727751) 1 NC_008261.1 identified by similarity to SP:Q59309; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 1727751 gap 4202942 gap Clostridium perfringens ATCC 13124 glyceraldehyde-3-phosphate dehydrogenase, type I YP_695954.1 1726753 R 195103 CDS YP_695955.1 110798615 4202742 complement(1727842..1728876) 1 NC_008261.1 identified by match to protein family HMM PF04198; sugar-binding domain-containing protein 1728876 4202742 CPF_1512 Clostridium perfringens ATCC 13124 sugar-binding domain-containing protein YP_695955.1 1727842 R 195103 CDS YP_695956.1 110800895 4202800 complement(1729103..1730488) 1 NC_008261.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1730488 rpoN 4202800 rpoN Clostridium perfringens ATCC 13124 RNA polymerase factor sigma-54 YP_695956.1 1729103 R 195103 CDS YP_695957.1 110800476 4201559 complement(1730739..1731506) 1 NC_008261.1 identified by similarity to GB:AAM23666.1; hypothetical protein 1731506 4201559 CPF_1514 Clostridium perfringens ATCC 13124 hypothetical protein YP_695957.1 1730739 R 195103 CDS YP_695958.1 110799847 4203434 complement(1731487..1732002) 1 NC_008261.1 identified by similarity to GB:AAO35342.1; hypothetical protein 1732002 4203434 CPF_1515 Clostridium perfringens ATCC 13124 hypothetical protein YP_695958.1 1731487 R 195103 CDS YP_695959.1 110799084 4201052 complement(1732604..1733674) 1 NC_008261.1 identified by match to protein family HMM PF02608; Bmp family lipoprotein 1733674 4201052 CPF_1516 Clostridium perfringens ATCC 13124 Bmp family lipoprotein YP_695959.1 1732604 R 195103 CDS YP_695960.1 110800233 4202757 complement(1733765..1734604) 1 NC_008261.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 1734604 4202757 CPF_1517 Clostridium perfringens ATCC 13124 degV family protein YP_695960.1 1733765 R 195103 CDS YP_695961.1 110799392 4203267 complement(1734619..1735080) 1 NC_008261.1 identified by match to protein family HMM PF00588; RNA methyltransferase 1735080 4203267 CPF_1518 Clostridium perfringens ATCC 13124 RNA methyltransferase YP_695961.1 1734619 R 195103 CDS YP_695962.1 110800319 4202161 complement(1735169..1736002) 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 1736002 4202161 CPF_1519 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_695962.1 1735169 R 195103 CDS YP_695963.1 110800526 4201182 complement(1736160..1737722) 1 NC_008261.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 1737722 4201182 CPF_1520 Clostridium perfringens ATCC 13124 von Willebrand factor A YP_695963.1 1736160 R 195103 CDS YP_695964.1 110801180 4203101 complement(1737887..1738852) 1 NC_008261.1 identified by match to protein family HMM PF01183; glycosyl hydrolase 1738852 4203101 CPF_1521 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_695964.1 1737887 R 195103 CDS YP_695965.1 110798856 4201484 complement(1738926..1739831) 1 NC_008261.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1739831 ddl 4201484 ddl Clostridium perfringens ATCC 13124 D-alanine--D-alanine ligase YP_695965.1 1738926 R 195103 CDS YP_695966.1 110798905 4202136 complement(1739951..1742314) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1742314 4202136 CPF_1523 Clostridium perfringens ATCC 13124 sensory box histidine kinase YP_695966.1 1739951 R 195103 CDS YP_695967.1 110799407 4201161 1742516..1743379 1 NC_008261.1 identified by match to protein family HMM PF00892; hypothetical protein 1743379 4201161 CPF_1524 Clostridium perfringens ATCC 13124 hypothetical protein YP_695967.1 1742516 D 195103 CDS YP_695968.1 110800037 4203704 complement(1743409..1744038) 1 NC_008261.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1744038 nth 4203704 nth Clostridium perfringens ATCC 13124 endonuclease III YP_695968.1 1743409 R 195103 CDS YP_695969.1 110799186 4202926 complement(1744050..1744754) 1 NC_008261.1 identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553; sn-glycerol-3-phosphate acyltransferase 1744754 plsD 4202926 plsD Clostridium perfringens ATCC 13124 sn-glycerol-3-phosphate acyltransferase YP_695969.1 1744050 R 195103 CDS YP_695970.1 110799201 4202393 complement(1744792..1745784) 1 NC_008261.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1745784 4202393 CPF_1527 Clostridium perfringens ATCC 13124 iron-sulfur cluster-binding protein YP_695970.1 1744792 R 195103 CDS YP_695971.1 110799359 4203097 complement(1745929..1746438) 1 NC_008261.1 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 1746438 cysE 4203097 cysE Clostridium perfringens ATCC 13124 serine O-acetyltransferase YP_695971.1 1745929 R 195103 CDS YP_695972.1 110800619 4202249 complement(1746457..1747359) 1 NC_008261.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1747359 cysK 4202249 cysK Clostridium perfringens ATCC 13124 cysteine synthase A YP_695972.1 1746457 R 195103 CDS YP_695973.1 110801365 4203249 complement(1747698..1748969) 1 NC_008261.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239; hypothetical protein 1748969 4203249 CPF_1530 Clostridium perfringens ATCC 13124 hypothetical protein YP_695973.1 1747698 R 195103 CDS YP_695974.1 110800274 4203614 1749309..1750097 1 NC_008261.1 identified by similarity to SP:P10344; match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 1750097 4203614 CPF_1531 Clostridium perfringens ATCC 13124 amino acid ABC transporter substrate-binding protein YP_695974.1 1749309 D 195103 CDS YP_695975.1 110800931 4202114 1750111..1750752 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1750752 4202114 CPF_1532 Clostridium perfringens ATCC 13124 His/Glu/Gln/Arg/opine ABC transporter permease YP_695975.1 1750111 D 195103 CDS YP_695976.1 110799302 4203138 1750764..1751456 1 NC_008261.1 identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1751456 4203138 CPF_1533 Clostridium perfringens ATCC 13124 amino acid ABC transporter ATP-binding protein YP_695976.1 1750764 D 195103 CDS YP_695977.1 110800669 4201713 complement(1751625..1752305) 1 NC_008261.1 hypothetical protein 1752305 4201713 CPF_1534 Clostridium perfringens ATCC 13124 hypothetical protein YP_695977.1 1751625 R 195103 CDS YP_695978.1 110801344 4203227 complement(1752378..1753274) 1 NC_008261.1 similar to YegS from E. coli; lipid kinase 1753274 4203227 CPF_1535 Clostridium perfringens ATCC 13124 lipid kinase YP_695978.1 1752378 R 195103 CDS YP_695979.1 110799283 4202613 1753574..1754095 1 NC_008261.1 identified by similarity to SP:P39823; match to protein family HMM PF01066; CDP-diacylglycerol--serine O-phosphatidyltransferase 1754095 pssA 4202613 pssA Clostridium perfringens ATCC 13124 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_695979.1 1753574 D 195103 CDS YP_695980.1 110800979 4202298 complement(1754142..1754492) 1 NC_008261.1 identified by similarity to GB:AAO34984.1; hypothetical protein 1754492 4202298 CPF_1537 Clostridium perfringens ATCC 13124 hypothetical protein YP_695980.1 1754142 R 195103 CDS YP_695981.1 110800324 4202088 complement(1754514..1755050) 1 NC_008261.1 identified by match to protein family HMM PF02915; rubrerythrin 1755050 4202088 CPF_1538 Clostridium perfringens ATCC 13124 rubrerythrin YP_695981.1 1754514 R 195103 CDS YP_695982.1 110800655 4201699 complement(1755102..1756451) 1 NC_008261.1 identified by similarity to SP:P37875; match to protein family HMM PF04293; stage V sporulation protein R 1756451 spoVR 4201699 spoVR Clostridium perfringens ATCC 13124 stage V sporulation protein R YP_695982.1 1755102 R 195103 CDS YP_695983.1 110799649 4202573 complement(1756478..1757656) 1 NC_008261.1 identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877; hypothetical protein 1757656 yhbH 4202573 yhbH Clostridium perfringens ATCC 13124 hypothetical protein YP_695983.1 1756478 R 195103 CDS YP_695984.1 110798709 4201315 complement(1757660..1759582) 1 NC_008261.1 identified by similarity to PIR:JC4602; match to protein family HMM PF06798; serine protein kinase 1759582 prkA 4201315 prkA Clostridium perfringens ATCC 13124 serine protein kinase YP_695984.1 1757660 R 195103 CDS YP_695985.1 110801424 4203020 complement(1759672..1761450) 1 NC_008261.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 1761450 recQ 4203020 recQ Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase RecQ YP_695985.1 1759672 R 195103 CDS YP_695986.1 110800349 4202016 complement(1761681..1762304) 1 NC_008261.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1762304 thiE 4202016 thiE Clostridium perfringens ATCC 13124 thiamine-phosphate pyrophosphorylase YP_695986.1 1761681 R 195103 CDS YP_695987.1 110799447 4201531 complement(1762297..1763094) 1 NC_008261.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 1763094 thiM 4201531 thiM Clostridium perfringens ATCC 13124 hydroxyethylthiazole kinase YP_695987.1 1762297 R 195103 CDS YP_695988.1 110800163 4203560 complement(1763106..1763900) 1 NC_008261.1 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1763900 thiD 4203560 thiD Clostridium perfringens ATCC 13124 phosphomethylpyrimidine kinase YP_695988.1 1763106 R 195103 CDS YP_695989.1 110799524 4203186 1764207..1765046 1 NC_008261.1 identified by match to protein family HMM PF01734; patatin family phospholipase 1765046 4203186 CPF_1546 Clostridium perfringens ATCC 13124 patatin family phospholipase YP_695989.1 1764207 D 195103 CDS YP_695990.1 110801133 4201634 complement(1765164..1766177) 1 NC_008261.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 1766177 4201634 CPF_1547 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_695990.1 1765164 R 195103 CDS YP_695991.1 110800969 4202288 1766395..1767459 1 NC_008261.1 identified by similarity to SP:P23905; match to protein family HMM PF00532; galactoside ABC transporter galactoside-binding protein 1767459 4202288 CPF_1548 Clostridium perfringens ATCC 13124 galactoside ABC transporter galactoside-binding protein YP_695991.1 1766395 D 195103 CDS YP_695992.1 110798692 4202214 1767534..1769081 1 NC_008261.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1769081 mglA 4202214 mglA Clostridium perfringens ATCC 13124 galactose/methyl galaxtoside transporter ATP-binding protein YP_695992.1 1767534 D 195103 CDS YP_695993.1 110799291 4202621 1769053..1770081 1 NC_008261.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 1770081 mglC 4202621 mglC Clostridium perfringens ATCC 13124 beta-methylgalactoside transporter inner membrane protein YP_695993.1 1769053 D 195103 CDS YP_695994.1 110800708 4203837 complement(1770121..1771143) 1 NC_008261.1 identified by similarity to SP:P05149; match to protein family HMM PF01263; aldose 1-epimerase 1771143 4203837 CPF_1551 Clostridium perfringens ATCC 13124 aldose 1-epimerase YP_695994.1 1770121 R 195103 CDS YP_695995.1 110801332 4201933 1771369..1772532 1 NC_008261.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 1772532 galK 4201933 galK Clostridium perfringens ATCC 13124 galactokinase YP_695995.1 1771369 D 195103 CDS YP_695996.1 110800686 4202529 1772655..1774151 1 NC_008261.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1774151 galT 4202529 galT Clostridium perfringens ATCC 13124 galactose-1-phosphate uridylyltransferase YP_695996.1 1772655 D 195103 CDS YP_695997.1 110801216 4203137 complement(1774342..1775997) 1 NC_008261.1 identified by match to protein family HMM PF00485; threonyl-tRNA synthetase/uridine kinase 1775997 4203137 CPF_1554 Clostridium perfringens ATCC 13124 threonyl-tRNA synthetase/uridine kinase YP_695997.1 1774342 R 195103 CDS YP_695998.1 110799029 4202279 1776128..1776826 1 NC_008261.1 identified by similarity to PIR:E96982; match to protein family HMM PF04239; hypothetical protein 1776826 4202279 CPF_1555 Clostridium perfringens ATCC 13124 hypothetical protein YP_695998.1 1776128 D 195103 CDS YP_695999.1 110799714 4201198 1776823..1777257 1 NC_008261.1 identified by similarity to PIR:D96982; hypothetical protein 1777257 4201198 CPF_1556 Clostridium perfringens ATCC 13124 hypothetical protein YP_695999.1 1776823 D 195103 CDS YP_696000.1 110798922 4200986 1777354..1778220 1 NC_008261.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 1778220 fba 4200986 fba Clostridium perfringens ATCC 13124 fructose-1,6-bisphosphate aldolase YP_696000.1 1777354 D 195103 CDS YP_696001.1 110801045 4202597 complement(1778267..1779310) 1 NC_008261.1 identified by similarity to PIR:A96980; hypothetical protein 1779310 4202597 CPF_1558 Clostridium perfringens ATCC 13124 hypothetical protein YP_696001.1 1778267 R 195103 CDS YP_696002.1 110800251 4201838 1779450..1780013 1 NC_008261.1 identified by match to protein family HMM PF01928; adenylate cyclase 1780013 4201838 CPF_1559 Clostridium perfringens ATCC 13124 adenylate cyclase YP_696002.1 1779450 D 195103 CDS YP_696003.1 110800535 4201191 complement(1780024..1780218) 1 NC_008261.1 hypothetical protein 1780218 4201191 CPF_1560 Clostridium perfringens ATCC 13124 hypothetical protein YP_696003.1 1780024 R 195103 CDS YP_696004.1 110799700 4203384 complement(1780263..1780880) 1 NC_008261.1 hypothetical protein 1780880 4203384 CPF_1561 Clostridium perfringens ATCC 13124 hypothetical protein YP_696004.1 1780263 R 195103 CDS YP_696005.1 110799274 4203069 complement(1781006..1782667) 1 NC_008261.1 identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF07653; NlpC/P60 family protein 1782667 4203069 CPF_1562 Clostridium perfringens ATCC 13124 NlpC/P60 family protein YP_696005.1 1781006 R 195103 CDS YP_696006.1 110800839 4203931 complement(1782833..1783201) 1 NC_008261.1 hypothetical protein 1783201 4203931 CPF_1563 Clostridium perfringens ATCC 13124 hypothetical protein YP_696006.1 1782833 R 195103 CDS YP_696007.1 110800160 4203557 1783389..1783775 1 NC_008261.1 hypothetical protein 1783775 4203557 CPF_1564 Clostridium perfringens ATCC 13124 hypothetical protein YP_696007.1 1783389 D 195103 CDS YP_696008.1 110800844 4203936 complement(1783902..1784054) 1 NC_008261.1 hypothetical protein 1784054 4203936 CPF_1565 Clostridium perfringens ATCC 13124 hypothetical protein YP_696008.1 1783902 R 195103 CDS YP_696009.1 110800316 4202158 complement(1784095..1784580) 1 NC_008261.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; ybaK/ebsC protein 1784580 4202158 CPF_1566 Clostridium perfringens ATCC 13124 ybaK/ebsC protein YP_696009.1 1784095 R 195103 CDS YP_696010.1 110801249 4203326 complement(1784747..1785049) 1 NC_008261.1 identified by similarity to GB:AAR27352.1; hypothetical protein 1785049 4203326 CPF_1567 Clostridium perfringens ATCC 13124 hypothetical protein YP_696010.1 1784747 R 195103 CDS YP_696011.1 110800996 4201671 complement(1785241..1786269) 1 NC_008261.1 identified by match to protein family HMM PF01183; glycosyl hydrolase 1786269 4201671 CPF_1568 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_696011.1 1785241 R 195103 CDS YP_696012.1 110799223 4201228 complement(1786323..1786805) 1 NC_008261.1 hypothetical protein 1786805 4201228 CPF_1569 Clostridium perfringens ATCC 13124 hypothetical protein YP_696012.1 1786323 R 195103 CDS YP_696013.1 110799837 4203735 complement(1786826..1787059) 1 NC_008261.1 identified by similarity to PIR:H97036; hypothetical protein 1787059 4203735 CPF_1570 Clostridium perfringens ATCC 13124 hypothetical protein YP_696013.1 1786826 R 195103 CDS YP_696014.1 110800499 4203354 complement(1787141..1787326) 1 NC_008261.1 hypothetical protein 1787326 4203354 CPF_1571 Clostridium perfringens ATCC 13124 hypothetical protein YP_696014.1 1787141 R 195103 CDS YP_696015.1 110800543 4202895 complement(1787345..1789843) 1 NC_008261.1 identified by similarity to GB:AAL96788.1; hypothetical protein 1789843 4202895 CPF_1572 Clostridium perfringens ATCC 13124 hypothetical protein YP_696015.1 1787345 R 195103 CDS YP_696016.1 110801174 4201034 complement(1789859..1791739) 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1791739 4201034 CPF_1573 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_696016.1 1789859 R 195103 CDS YP_696017.1 110801004 4201349 complement(1791790..1794849) 1 NC_008261.1 identified by match to protein family HMM PF01551; match to protein family HMM TIGR01665; phage structural protein 1794849 4201349 CPF_1574 Clostridium perfringens ATCC 13124 phage structural protein YP_696017.1 1791790 R 195103 CDS YP_696018.1 110798753 4200954 complement(1794854..1795564) 1 NC_008261.1 identified by match to protein family HMM TIGR01633; phage tail component 1795564 4200954 CPF_1575 Clostridium perfringens ATCC 13124 phage tail component YP_696018.1 1794854 R 195103 CDS YP_696019.1 110800747 4201424 complement(1795557..1798811) 1 NC_008261.1 identified by match to protein family HMM TIGR01760; TP901 family phage tail tape measure protein 1798811 4201424 CPF_1576 Clostridium perfringens ATCC 13124 TP901 family phage tail tape measure protein YP_696019.1 1795557 R 195103 CDS YP_696020.1 110799182 4202922 complement(1798847..1799200) 1 NC_008261.1 identified by similarity to GB:AAF33581.1; hypothetical protein 1799200 4202922 CPF_1577 Clostridium perfringens ATCC 13124 hypothetical protein YP_696020.1 1798847 R 195103 CDS YP_696021.1 110799983 4201253 complement(1799362..1799679) 1 NC_008261.1 identified by similarity to GB:AAL96782.1; hypothetical protein 1799679 4201253 CPF_1578 Clostridium perfringens ATCC 13124 hypothetical protein YP_696021.1 1799362 R 195103 CDS YP_696022.1 110800688 4202531 complement(1799682..1800284) 1 NC_008261.1 identified by match to protein family HMM TIGR01603; phi13 family phage major tail protein 1800284 4202531 CPF_1579 Clostridium perfringens ATCC 13124 phi13 family phage major tail protein YP_696022.1 1799682 R 195103 CDS YP_696023.1 110800467 4201550 complement(1800301..1800648) 1 NC_008261.1 identified by similarity to GB:AAL96780.1; hypothetical protein 1800648 4201550 CPF_1580 Clostridium perfringens ATCC 13124 hypothetical protein YP_696023.1 1800301 R 195103 CDS YP_696024.1 110801093 4202862 complement(1800657..1801085) 1 NC_008261.1 identified by match to protein family HMM TIGR01725; HK97 family phage protein 1801085 4202862 CPF_1581 Clostridium perfringens ATCC 13124 HK97 family phage protein YP_696024.1 1800657 R 195103 CDS YP_696025.1 110799342 4203080 complement(1801094..1801423) 1 NC_008261.1 identified by match to protein family HMM TIGR01563; phage head-tail adaptor 1801423 4203080 CPF_1582 Clostridium perfringens ATCC 13124 phage head-tail adaptor YP_696025.1 1801094 R 195103 CDS YP_696026.1 110800362 4202029 complement(1801416..1801694) 1 NC_008261.1 identified by match to protein family HMM TIGR01560; QlrG family phage protein 1801694 4202029 CPF_1583 Clostridium perfringens ATCC 13124 QlrG family phage protein YP_696026.1 1801416 R 195103 CDS YP_696027.1 110799270 4203065 complement(1801706..1802890) 1 NC_008261.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; HK97 family phage major capsid protein 1802890 4203065 CPF_1584 Clostridium perfringens ATCC 13124 HK97 family phage major capsid protein YP_696027.1 1801706 R 195103 CDS YP_696028.1 110801110 4203285 complement(1802931..1803536) 1 NC_008261.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; HK97 family phage prohead protease 1803536 4203285 CPF_1585 Clostridium perfringens ATCC 13124 HK97 family phage prohead protease YP_696028.1 1802931 R 195103 CDS YP_696029.1 110799190 4202382 complement(1803526..1804773) 1 NC_008261.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family phage portal protein 1804773 4202382 CPF_1586 Clostridium perfringens ATCC 13124 HK97 family phage portal protein YP_696029.1 1803526 R 195103 CDS YP_696030.1 110800668 4201712 complement(1804774..1806513) 1 NC_008261.1 identified by match to protein family HMM PF03354; phage terminase, large subunit 1806513 4201712 CPF_1587 Clostridium perfringens ATCC 13124 phage terminase, large subunit YP_696030.1 1804774 R 195103 CDS YP_696031.1 110801293 4201600 complement(1806506..1807018) 1 NC_008261.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase small subunit 1807018 4201600 CPF_1588 Clostridium perfringens ATCC 13124 phage terminase small subunit YP_696031.1 1806506 R 195103 CDS YP_696032.1 110801262 4201569 complement(1807521..1808342) 1 NC_008261.1 hypothetical protein 1808342 4201569 CPF_1589 Clostridium perfringens ATCC 13124 hypothetical protein YP_696032.1 1807521 R 195103 CDS YP_696033.1 110799530 4203192 complement(1808517..1809065) 1 NC_008261.1 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1809065 4203192 CPF_1590 Clostridium perfringens ATCC 13124 phage integrase site specific recombinase YP_696033.1 1808517 R 195103 CDS YP_696034.1 110800970 4202289 complement(1809160..1809513) 1 NC_008261.1 hypothetical protein 1809513 4202289 CPF_1591 Clostridium perfringens ATCC 13124 hypothetical protein YP_696034.1 1809160 R 195103 CDS YP_696035.1 110799063 4202566 complement(1809572..1809778) 1 NC_008261.1 hypothetical protein 1809778 4202566 CPF_1592 Clostridium perfringens ATCC 13124 hypothetical protein YP_696035.1 1809572 R 195103 CDS YP_696036.1 110799974 4203756 complement(1809920..1810381) 1 NC_008261.1 DNA-binding protein 1810381 4203756 CPF_1593 Clostridium perfringens ATCC 13124 DNA-binding protein YP_696036.1 1809920 R 195103 CDS YP_696037.1 110800436 4203816 complement(1810518..1810709) 1 NC_008261.1 hypothetical protein 1810709 4203816 CPF_1594 Clostridium perfringens ATCC 13124 hypothetical protein YP_696037.1 1810518 R 195103 CDS YP_696038.1 110798693 4202215 complement(1810917..1811306) 1 NC_008261.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein 1811306 4202215 CPF_1595 Clostridium perfringens ATCC 13124 single-strand DNA-binding protein YP_696038.1 1810917 R 195103 CDS YP_696039.1 110800965 4202284 complement(1811321..1811467) 1 NC_008261.1 hypothetical protein 1811467 4202284 CPF_1596 Clostridium perfringens ATCC 13124 hypothetical protein YP_696039.1 1811321 R 195103 CDS YP_696040.1 110800055 4203762 complement(1811479..1812762) 1 NC_008261.1 identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; replicative DNA helicase 1812762 dnaB 4203762 dnaB Clostridium perfringens ATCC 13124 replicative DNA helicase YP_696040.1 1811479 R 195103 CDS YP_696041.1 110799953 4203793 complement(1812773..1813513) 1 NC_008261.1 identified by similarity to GB:AAL96804.1; match to protein family HMM TIGR02220; hypothetical protein 1813513 4203793 CPF_1598 Clostridium perfringens ATCC 13124 hypothetical protein YP_696041.1 1812773 R 195103 CDS YP_696042.1 110799817 4203695 complement(1813541..1813684) 1 NC_008261.1 identified by similarity to GB:AAL96803.1; hypothetical protein 1813684 4203695 CPF_1599 Clostridium perfringens ATCC 13124 hypothetical protein YP_696042.1 1813541 R 195103 CDS YP_696043.1 110799134 4200965 complement(1813702..1813881) 1 NC_008261.1 identified by similarity to GB:AAO35656.1; hypothetical protein 1813881 4200965 CPF_1600 Clostridium perfringens ATCC 13124 hypothetical protein YP_696043.1 1813702 R 195103 CDS YP_696044.1 110801232 4203309 complement(1813907..1814137) 1 NC_008261.1 hypothetical protein 1814137 4203309 CPF_1601 Clostridium perfringens ATCC 13124 hypothetical protein YP_696044.1 1813907 R 195103 CDS YP_696045.1 110800388 4201820 complement(1814143..1814640) 1 NC_008261.1 identified by similarity to GB:AAL80538.1; hypothetical protein 1814640 4201820 CPF_1602 Clostridium perfringens ATCC 13124 hypothetical protein YP_696045.1 1814143 R 195103 CDS YP_696046.1 110800541 4202893 complement(1814690..1814878) 1 NC_008261.1 identified by match to protein family HMM PF01381; DNA-binding protein 1814878 4202893 CPF_1603 Clostridium perfringens ATCC 13124 DNA-binding protein YP_696046.1 1814690 R 195103 CDS YP_696047.1 110800265 4201852 1815028..1815372 1 NC_008261.1 identified by match to protein family HMM PF01381; DNA-binding protein 1815372 4201852 CPF_1604 Clostridium perfringens ATCC 13124 DNA-binding protein YP_696047.1 1815028 D 195103 CDS YP_696048.1 110799492 4202336 1815423..1817012 1 NC_008261.1 identified by similarity to GB:AAO79115.1; hypothetical protein 1817012 4202336 CPF_1605 Clostridium perfringens ATCC 13124 hypothetical protein YP_696048.1 1815423 D 195103 CDS YP_696049.1 110800899 4202804 1817080..1817934 1 NC_008261.1 identified by match to protein family HMM PF02086; adenine-specific DNA methyltransferase 1817934 4202804 CPF_1606 Clostridium perfringens ATCC 13124 adenine-specific DNA methyltransferase YP_696049.1 1817080 D 195103 CDS YP_696050.1 110798820 4202479 1818046..1818543 1 NC_008261.1 identified by similarity to GB:AAO35652.1; match to protein family HMM PF06114; hypothetical protein 1818543 4202479 CPF_1607 Clostridium perfringens ATCC 13124 hypothetical protein YP_696050.1 1818046 D 195103 CDS YP_696051.1 110799249 4202073 1818556..1820064 1 NC_008261.1 identified by match to protein family HMM PF00239; resolvase 1820064 4202073 CPF_1608 Clostridium perfringens ATCC 13124 resolvase YP_696051.1 1818556 D 195103 CDS YP_696052.1 110799888 4203904 complement(1820078..1820416) 1 NC_008261.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 1820416 4203904 CPF_1609 Clostridium perfringens ATCC 13124 prolyl-tRNA synthetase YP_696052.1 1820078 R 195103 CDS YP_696053.1 110800230 4202754 complement(1820820..1821197) 1 NC_008261.1 identified by similarity to SP:P45491; lipoprotein 1821197 4202754 CPF_1610 Clostridium perfringens ATCC 13124 lipoprotein YP_696053.1 1820820 R 195103 CDS YP_696054.1 110800787 4201773 complement(1821385..1821534) 1 NC_008261.1 hypothetical protein 1821534 4201773 CPF_1611 Clostridium perfringens ATCC 13124 hypothetical protein YP_696054.1 1821385 R 195103 CDS YP_696055.1 110798943 4202174 complement(1821673..1822233) 1 NC_008261.1 identified by similarity to SP:Q58794; hypothetical protein 1822233 4202174 CPF_1612 Clostridium perfringens ATCC 13124 hypothetical protein YP_696055.1 1821673 R 195103 CDS YP_696056.1 110799559 4203494 complement(1822317..1823267) 1 NC_008261.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1823267 rnz 4203494 rnz Clostridium perfringens ATCC 13124 ribonuclease Z YP_696056.1 1822317 R 195103 CDS YP_696057.1 110799664 4202588 complement(1823380..1827795) 1 NC_008261.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754; glycosyl hydrolase 1827795 4202588 CPF_1614 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_696057.1 1823380 R 195103 CDS YP_696058.1 110800849 4201271 1828029..1828655 1 NC_008261.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 1828655 4201271 CPF_1615 Clostridium perfringens ATCC 13124 TrkA domain-containing protein YP_696058.1 1828029 D 195103 CDS YP_696059.1 110799276 4203071 complement(1828707..1829459) 1 NC_008261.1 identified by similarity to SP:Q58828; hypothetical protein 1829459 4203071 CPF_1616 Clostridium perfringens ATCC 13124 hypothetical protein YP_696059.1 1828707 R 195103 CDS YP_696060.1 110799376 4203641 complement(1829551..1830699) 1 NC_008261.1 identified by match to protein family HMM PF07907; hypothetical protein 1830699 4203641 CPF_1617 Clostridium perfringens ATCC 13124 hypothetical protein YP_696060.1 1829551 R 195103 CDS YP_696061.1 110800195 4202972 complement(1830780..1835912) 1 NC_008261.1 identified by match to protein family HMM PF00746; match to protein family HMM PF01336; match to protein family HMM TIGR01167; OB-fold nucleic acid binding domain-containing protein 1835912 4202972 CPF_1618 Clostridium perfringens ATCC 13124 OB-fold nucleic acid binding domain-containing protein YP_696061.1 1830780 R 195103 CDS YP_696062.1 110800929 4202112 complement(1836149..1836652) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 1836652 4202112 CPF_1619 Clostridium perfringens ATCC 13124 acetyltransferase YP_696062.1 1836149 R 195103 CDS YP_696063.1 110798872 4201150 1836961..1837740 1 NC_008261.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; HisJ family histidinol phosphate phosphatase 1837740 4201150 CPF_1620 Clostridium perfringens ATCC 13124 HisJ family histidinol phosphate phosphatase YP_696063.1 1836961 D 195103 CDS YP_696064.1 110799471 4201341 1838091..1839404 1 NC_008261.1 identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 1839404 4201341 CPF_1621 Clostridium perfringens ATCC 13124 sodium:neurotransmitter symporter family protein YP_696064.1 1838091 D 195103 CDS YP_696065.1 110798629 4201682 1839695..1840390 1 NC_008261.1 identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 1840390 4201682 CPF_1622 Clostridium perfringens ATCC 13124 proton-coupled thiamine transporter YuaJ YP_696065.1 1839695 D 195103 CDS YP_696066.1 110799374 4203639 1840499..1841575 1 NC_008261.1 identified by match to protein family HMM PF00155; match to protein family HMM PF04864; aminotransferase 1841575 4203639 CPF_1623 Clostridium perfringens ATCC 13124 aminotransferase YP_696066.1 1840499 D 195103 CDS YP_696067.1 110799229 4201798 complement(1841711..1842757) 1 NC_008261.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846; calcium/proton exchanger 1842757 cax 4201798 cax Clostridium perfringens ATCC 13124 calcium/proton exchanger YP_696067.1 1841711 R 195103 CDS YP_696068.1 110799756 4203654 complement(1843198..1844493) 1 NC_008261.1 identified by match to protein family HMM PF01663; phosphodiesterase/nucleotide pyrophosphatase 1844493 4203654 CPF_1625 Clostridium perfringens ATCC 13124 phosphodiesterase/nucleotide pyrophosphatase YP_696068.1 1843198 R 195103 CDS YP_696069.1 110800253 4201840 complement(1844550..1844885) 1 NC_008261.1 hypothetical protein 1844885 4201840 CPF_1626 Clostridium perfringens ATCC 13124 hypothetical protein YP_696069.1 1844550 R 195103 CDS YP_696070.1 110801056 4202608 complement(1845025..1845438) 1 NC_008261.1 identified by similarity to GB:AAO07569.1; hypothetical protein 1845438 4202608 CPF_1627 Clostridium perfringens ATCC 13124 hypothetical protein YP_696070.1 1845025 R 195103 CDS YP_696071.1 110798604 4202731 complement(1845638..1846543) 1 NC_008261.1 identified by match to protein family HMM PF04018; hypothetical protein 1846543 4202731 CPF_1628 Clostridium perfringens ATCC 13124 hypothetical protein YP_696071.1 1845638 R 195103 CDS YP_696072.1 110801348 4203231 complement(1846709..1847872) 1 NC_008261.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB 1847872 4203231 CPF_1629 Clostridium perfringens ATCC 13124 IS605 family transposase OrfB YP_696072.1 1846709 R 195103 CDS YP_696073.1 110798890 4203425 complement(1848575..1849366) 1 NC_008261.1 identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 1849366 4203425 CPF_1631 Clostridium perfringens ATCC 13124 D-alanyl-D-alanine carboxypeptidase YP_696073.1 1848575 R 195103 CDS YP_696074.1 110800416 4202045 complement(1849636..1849962) 1 NC_008261.1 identified by similarity to PIR:C96961; hypothetical protein 1849962 4202045 CPF_1632 Clostridium perfringens ATCC 13124 hypothetical protein YP_696074.1 1849636 R 195103 CDS YP_696075.1 110800522 4201178 1850448..1851389 1 NC_008261.1 identified by similarity to GB:AAO36346.1; hypothetical protein 1851389 4201178 CPF_1634 Clostridium perfringens ATCC 13124 hypothetical protein YP_696075.1 1850448 D 195103 CDS YP_696076.1 110799883 4203899 complement(1851427..1852296) 1 NC_008261.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase 1852296 map 4203899 map Clostridium perfringens ATCC 13124 methionine aminopeptidase YP_696076.1 1851427 R 195103 CDS YP_696077.1 110800797 4202233 complement(1852644..1853240) 1 NC_008261.1 identified by similarity to PIR:B97000; hypothetical protein 1853240 4202233 CPF_1636 Clostridium perfringens ATCC 13124 hypothetical protein YP_696077.1 1852644 R 195103 CDS YP_696078.1 110800968 4202287 1853342..1854265 1 NC_008261.1 identified by similarity to PIR:C97224; hypothetical protein 1854265 4202287 CPF_1637 Clostridium perfringens ATCC 13124 hypothetical protein YP_696078.1 1853342 D 195103 CDS YP_696079.1 110800138 4203535 complement(1854405..1854974) 1 NC_008261.1 hypothetical protein 1854974 4203535 CPF_1638 Clostridium perfringens ATCC 13124 hypothetical protein YP_696079.1 1854405 R 195103 CDS YP_696080.1 110801120 4201621 complement(1855060..1855176) 1 NC_008261.1 hypothetical protein 1855176 4201621 CPF_1639 Clostridium perfringens ATCC 13124 hypothetical protein YP_696080.1 1855060 R 195103 CDS YP_696081.1 110800282 4203622 1855228..1855389 1 NC_008261.1 hypothetical protein 1855389 4203622 CPF_1641 Clostridium perfringens ATCC 13124 hypothetical protein YP_696081.1 1855228 D 195103 CDS YP_696082.1 110799850 4203437 complement(1855339..1855554) 1 NC_008261.1 hypothetical protein 1855554 4203437 CPF_1640 Clostridium perfringens ATCC 13124 hypothetical protein YP_696082.1 1855339 R 195103 CDS YP_696083.1 110799069 4202572 complement(1855590..1856072) 1 NC_008261.1 hypothetical protein 1856072 4202572 CPF_1642 Clostridium perfringens ATCC 13124 hypothetical protein YP_696083.1 1855590 R 195103 CDS YP_696084.1 110800363 4201972 complement(1856289..1856882) 1 NC_008261.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1856882 engB 4201972 engB Clostridium perfringens ATCC 13124 ribosome biogenesis GTP-binding protein YsxC YP_696084.1 1856289 R 195103 CDS YP_696085.1 110799208 4201212 complement(1856882..1859212) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 1859212 lon 4201212 lon Clostridium perfringens ATCC 13124 ATP-dependent protease La YP_696085.1 1856882 R 195103 CDS YP_696086.1 110798596 4201241 complement(1859334..1861046) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902; ATP-dependent protease LonB 1861046 lonB 4201241 lonB Clostridium perfringens ATCC 13124 ATP-dependent protease LonB YP_696086.1 1859334 R 195103 CDS YP_696087.1 110800496 4201971 complement(1861157..1862464) 1 NC_008261.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1862464 clpX 4201971 clpX Clostridium perfringens ATCC 13124 ATP-dependent protease ATP-binding subunit ClpX YP_696087.1 1861157 R 195103 CDS YP_696088.1 110799833 4203731 complement(1862504..1863088) 1 NC_008261.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1863088 clpP 4203731 clpP Clostridium perfringens ATCC 13124 ATP-dependent Clp protease proteolytic subunit YP_696088.1 1862504 R 195103 CDS YP_696089.1 110800198 4202975 complement(1863279..1864565) 1 NC_008261.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1864565 tig 4202975 tig Clostridium perfringens ATCC 13124 trigger factor YP_696089.1 1863279 R 195103 CDS YP_696090.1 110799214 4201219 complement(1864692..1865480) 1 NC_008261.1 identified by match to protein family HMM PF01261; AP endonuclease 1865480 4201219 CPF_1649 Clostridium perfringens ATCC 13124 AP endonuclease YP_696090.1 1864692 R 195103 CDS YP_696091.1 110801126 4201627 1865685..1867271 1 NC_008261.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 1867271 4201627 CPF_1650 Clostridium perfringens ATCC 13124 DEAD/DEAH box helicase YP_696091.1 1865685 D 195103 CDS YP_696092.1 110798648 4202696 complement(1867310..1867582) 1 NC_008261.1 hypothetical protein 1867582 4202696 CPF_1651 Clostridium perfringens ATCC 13124 hypothetical protein YP_696092.1 1867310 R 195103 CDS YP_696093.1 110801027 4201939 1867767..1868474 1 NC_008261.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1868474 deoD 4201939 deoD Clostridium perfringens ATCC 13124 purine nucleoside phosphorylase YP_696093.1 1867767 D 195103 CDS YP_696094.1 110800245 4202769 complement(1868529..1869803) 1 NC_008261.1 hypothetical protein 1869803 4202769 CPF_1653 Clostridium perfringens ATCC 13124 hypothetical protein YP_696094.1 1868529 R 195103 CDS YP_696095.1 110798957 4201370 complement(1869814..1870158) 1 NC_008261.1 hypothetical protein 1870158 4201370 CPF_1654 Clostridium perfringens ATCC 13124 hypothetical protein YP_696095.1 1869814 R 195103 CDS YP_696096.1 110799993 4201263 complement(1870342..1871250) 1 NC_008261.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1871250 4201263 CPF_1655 Clostridium perfringens ATCC 13124 DNA polymerase III subunit epsilon YP_696096.1 1870342 R 195103 CDS YP_696097.1 110799577 4202674 complement(1871497..1874418) 1 NC_008261.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase 1874418 4202674 CPF_1656 Clostridium perfringens ATCC 13124 peptidase YP_696097.1 1871497 R 195103 CDS YP_696098.1 110799779 4203522 complement(1874793..1875062) 1 NC_008261.1 hypothetical protein 1875062 4203522 CPF_1657 Clostridium perfringens ATCC 13124 hypothetical protein YP_696098.1 1874793 R 195103 CDS YP_696099.1 110798886 4203421 1875232..1876383 1 NC_008261.1 identified by similarity to GB:AAO35894.1; hypothetical protein 1876383 4203421 CPF_1658 Clostridium perfringens ATCC 13124 hypothetical protein YP_696099.1 1875232 D 195103 CDS YP_696100.1 110800624 4202254 1877319..1877897 1 NC_008261.1 identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613; flavoredoxin 1877897 4202254 CPF_1661 Clostridium perfringens ATCC 13124 flavoredoxin YP_696100.1 1877319 D 195103 CDS YP_696101.1 110799945 4203785 complement(1878024..1879595) 1 NC_008261.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein 1879595 4203785 CPF_1662 Clostridium perfringens ATCC 13124 voltage-gated chloride channel family protein YP_696101.1 1878024 R 195103 CDS YP_696102.1 110799068 4202571 1879858..1881168 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; RnfABCDGE type electron transport complex subunit C 1881168 4202571 CPF_1663 Clostridium perfringens ATCC 13124 RnfABCDGE type electron transport complex subunit C YP_696102.1 1879858 D 195103 CDS YP_696103.1 110800957 4203346 1881182..1882162 1 NC_008261.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 1882162 4203346 CPF_1664 Clostridium perfringens ATCC 13124 RnfABCDGE type electron transport complex subunit D YP_696103.1 1881182 D 195103 CDS YP_696104.1 110800428 4203808 complement(1882473..1882730) 1 NC_008261.1 identified by similarity to GB:CAH17248.1; match to protein family HMM PF07866; hypothetical protein 1882730 4203808 CPF_1665 Clostridium perfringens ATCC 13124 hypothetical protein YP_696104.1 1882473 R 195103 CDS YP_696105.1 110801269 4201576 complement(1882859..1884016) 1 NC_008261.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1884016 thiI 4201576 thiI Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiI YP_696105.1 1882859 R 195103 CDS YP_696106.1 110798941 4202172 complement(1884013..1885158) 1 NC_008261.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; class V aminotransferase 1885158 4202172 CPF_1667 Clostridium perfringens ATCC 13124 class V aminotransferase YP_696106.1 1884013 R 195103 CDS YP_696107.1 110799950 4203790 complement(1885332..1885769) 1 NC_008261.1 identified by similarity to SP:P21204; match to protein family HMM PF01842; hypothetical protein 1885769 4203790 CPF_1668 Clostridium perfringens ATCC 13124 hypothetical protein YP_696107.1 1885332 R 195103 CDS YP_696108.1 110800954 4203343 complement(1888964..1889803) 1 NC_008261.1 identified by match to protein family HMM PF02574; homocysteine S-methyltransferase 1889803 4203343 CPF_1670 Clostridium perfringens ATCC 13124 homocysteine S-methyltransferase YP_696108.1 1888964 R 195103 CDS YP_696109.1 110798958 4201371 1890045..1890773 1 NC_008261.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1890773 4201371 CPF_1671 Clostridium perfringens ATCC 13124 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_696109.1 1890045 D 195103 CDS YP_696110.1 110800336 4202100 complement(1890817..1892205) 1 NC_008261.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1892205 4202100 CPF_1672 Clostridium perfringens ATCC 13124 sodium:alanine symporter family protein YP_696110.1 1890817 R 195103 CDS YP_696111.1 110800576 4202342 complement(1892512..1893168) 1 NC_008261.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein 1893168 4202342 CPF_1673 Clostridium perfringens ATCC 13124 HD domain-containing protein YP_696111.1 1892512 R 195103 CDS YP_696112.1 110799810 4203688 1893491..1894243 1 NC_008261.1 hypothetical protein 1894243 4203688 CPF_1674 Clostridium perfringens ATCC 13124 hypothetical protein YP_696112.1 1893491 D 195103 CDS YP_696113.1 110801431 4203027 1894448..1895425 1 NC_008261.1 identified by match to protein family HMM PF03576; T4 family peptidase 1895425 4203027 CPF_1675 Clostridium perfringens ATCC 13124 T4 family peptidase YP_696113.1 1894448 D 195103 CDS YP_696114.1 110800582 4202348 1895666..1895848 1 NC_008261.1 identified by match to protein family HMM PF00269; small, acid-soluble spore protein 1895848 4202348 CPF_1676 Clostridium perfringens ATCC 13124 small, acid-soluble spore protein YP_696114.1 1895666 D 195103 CDS YP_696115.1 110800222 4202941 complement(1895896..1896336) 1 NC_008261.1 identified by similarity to GB:AAM24816.1; hypothetical protein 1896336 4202941 CPF_1677 Clostridium perfringens ATCC 13124 hypothetical protein YP_696115.1 1895896 R 195103 CDS YP_696116.1 110800778 4201764 complement(1896336..1896977) 1 NC_008261.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 1896977 pcp 4201764 pcp Clostridium perfringens ATCC 13124 pyrrolidone-carboxylate peptidase YP_696116.1 1896336 R 195103 CDS YP_696117.1 110799750 4203648 complement(1897013..1897942) 1 NC_008261.1 identified by match to protein family HMM PF06166; hypothetical protein 1897942 4203648 CPF_1679 Clostridium perfringens ATCC 13124 hypothetical protein YP_696117.1 1897013 R 195103 CDS YP_696118.2 261876157 4202966 complement(1897955..1898635) 1 NC_008261.1 identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149; hypothetical protein 1898635 4202966 CPF_1680 Clostridium perfringens ATCC 13124 hypothetical protein YP_696118.2 1897955 R 195103 CDS YP_696119.1 110798650 4202698 complement(1898873..1901473) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; clpB protein 1901473 clpB 4202698 clpB Clostridium perfringens ATCC 13124 clpB protein YP_696119.1 1898873 R 195103 CDS YP_696120.1 110799315 4203151 1901843..1903330 1 NC_008261.1 identified by match to protein family HMM PF04607; hypothetical protein 1903330 4203151 CPF_1682 Clostridium perfringens ATCC 13124 hypothetical protein YP_696120.1 1901843 D 195103 CDS YP_696121.1 110800877 4203871 1903410..1904840 1 NC_008261.1 identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthase 1904840 cls 4203871 cls Clostridium perfringens ATCC 13124 cardiolipin synthase YP_696121.1 1903410 D 195103 CDS YP_696122.1 110799627 4201501 complement(1905002..1906627) 1 NC_008261.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02910; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1906627 4201501 CPF_1684 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide oxidoreductase YP_696122.1 1905002 R 195103 CDS YP_696123.1 110800397 4201829 complement(1906828..1908105) 1 NC_008261.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1908105 hemL 4201829 hemL Clostridium perfringens ATCC 13124 glutamate-1-semialdehyde aminotransferase YP_696123.1 1906828 R 195103 CDS YP_696124.1 110799053 4202556 complement(1908168..1909133) 1 NC_008261.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1909133 hemB 4202556 hemB Clostridium perfringens ATCC 13124 delta-aminolevulinic acid dehydratase YP_696124.1 1908168 R 195103 CDS YP_696125.1 110800584 4202350 complement(1909190..1910668) 1 NC_008261.1 identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen-III methyltransferase/synthase 1910668 hemD 4202350 hemD Clostridium perfringens ATCC 13124 uroporphyrinogen-III methyltransferase/synthase YP_696125.1 1909190 R 195103 CDS YP_696126.1 110800724 4202471 complement(1910677..1911552) 1 NC_008261.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1911552 hemC 4202471 hemC Clostridium perfringens ATCC 13124 porphobilinogen deaminase YP_696126.1 1910677 R 195103 CDS YP_696127.1 110799699 4203383 complement(1911610..1912236) 1 NC_008261.1 catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 1912236 4203383 CPF_1689 Clostridium perfringens ATCC 13124 precorrin-2 dehydrogenase YP_696127.1 1911610 R 195103 CDS YP_696128.1 110799047 4201303 complement(1912236..1913438) 1 NC_008261.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1913438 hemA 4201303 hemA Clostridium perfringens ATCC 13124 glutamyl-tRNA reductase YP_696128.1 1912236 R 195103 CDS YP_696129.1 110799551 4202648 complement(1913855..1914835) 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C 1914835 arsC 4202648 arsC Clostridium perfringens ATCC 13124 anaerobic sulfite reductase subunit C YP_696129.1 1913855 R 195103 CDS YP_696130.1 110798579 4202725 complement(1914849..1915640) 1 NC_008261.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1915640 asrB 4202725 asrB Clostridium perfringens ATCC 13124 anaerobic sulfite reductase subunit B YP_696130.1 1914849 R 195103 CDS YP_696131.1 110801377 4203458 complement(1915633..1916649) 1 NC_008261.1 identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910; sulfite reductase, iron-sulfur subunit 1916649 4203458 CPF_1693 Clostridium perfringens ATCC 13124 sulfite reductase, iron-sulfur subunit YP_696131.1 1915633 R 195103 CDS YP_696132.1 110800616 4202246 complement(1916889..1917581) 1 NC_008261.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1917581 4202246 CPF_1694 Clostridium perfringens ATCC 13124 Crp/FNR family transcriptional regulator YP_696132.1 1916889 R 195103 CDS YP_696133.1 110800672 4202515 complement(1917799..1918596) 1 NC_008261.1 identified by similarity to SP:P11097; match to protein family HMM PF01226; formate/nitrite transporter 1918596 fnt 4202515 fnt Clostridium perfringens ATCC 13124 formate/nitrite transporter YP_696133.1 1917799 R 195103 CDS YP_696134.1 110799797 4202663 complement(1918804..1919424) 1 NC_008261.1 hypothetical protein 1919424 4202663 CPF_1696 Clostridium perfringens ATCC 13124 hypothetical protein YP_696134.1 1918804 R 195103 CDS YP_696135.1 110799012 4201872 complement(1919402..1919695) 1 NC_008261.1 identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein 1919695 4201872 CPF_1697 Clostridium perfringens ATCC 13124 GIY-YIG domain-containing protein YP_696135.1 1919402 R 195103 CDS YP_696136.1 110800462 4201545 1919946..1922006 1 NC_008261.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1922006 4201545 CPF_1698 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_696136.1 1919946 D 195103 CDS YP_696137.1 110800172 4203666 complement(1922470..1923735) 1 NC_008261.1 hypothetical protein 1923735 4203666 CPF_1699 Clostridium perfringens ATCC 13124 hypothetical protein YP_696137.1 1922470 R 195103 CDS YP_696138.1 110800168 4203565 complement(1925350..1925541) 1 NC_008261.1 hypothetical protein 1925541 4203565 CPF_1702 Clostridium perfringens ATCC 13124 hypothetical protein YP_696138.1 1925350 R 195103 CDS YP_696139.1 110799769 4203512 complement(1925590..1926219) 1 NC_008261.1 identified by match to protein family HMM PF00075; ribonuclease HI 1926219 4203512 CPF_1703 Clostridium perfringens ATCC 13124 ribonuclease HI YP_696139.1 1925590 R 195103 CDS YP_696140.1 110798859 4201137 complement(1926235..1927206) 1 NC_008261.1 identified by similarity to GB:AAO35153.1; match to protein family HMM PF06803; hypothetical protein 1927206 4201137 CPF_1704 Clostridium perfringens ATCC 13124 hypothetical protein YP_696140.1 1926235 R 195103 CDS YP_696141.1 110799144 4200975 complement(1927319..1928347) 1 NC_008261.1 identified by match to protein family HMM PF01694; rhomboid family protein 1928347 4200975 CPF_1705 Clostridium perfringens ATCC 13124 rhomboid family protein YP_696141.1 1927319 R 195103 CDS YP_696142.1 110801429 4203025 complement(1928365..1930164) 1 NC_008261.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1930164 pepF 4203025 pepF Clostridium perfringens ATCC 13124 oligoendopeptidase F YP_696142.1 1928365 R 195103 CDS YP_696143.1 110801064 4201738 complement(1930185..1930583) 1 NC_008261.1 identified by similarity to PIR:F97017; hypothetical protein 1930583 4201738 CPF_1707 Clostridium perfringens ATCC 13124 hypothetical protein YP_696143.1 1930185 R 195103 CDS YP_696144.1 110800291 4202874 1930752..1931087 1 NC_008261.1 identified by similarity to PIR:E97017; hypothetical protein 1931087 4202874 CPF_1708 Clostridium perfringens ATCC 13124 hypothetical protein YP_696144.1 1930752 D 195103 CDS YP_696145.1 110798652 4202700 1931160..1931828 1 NC_008261.1 identified by similarity to SP:O87862; match to protein family HMM PF00005; zinc ABC transporter ATP-binding protein 1931828 4202700 CPF_1709 Clostridium perfringens ATCC 13124 zinc ABC transporter ATP-binding protein YP_696145.1 1931160 D 195103 CDS YP_696146.1 110800400 4201832 1931847..1932656 1 NC_008261.1 identified by match to protein family HMM PF00950; zinc ABC transporter permease 1932656 4201832 CPF_1710 Clostridium perfringens ATCC 13124 zinc ABC transporter permease YP_696146.1 1931847 D 195103 CDS YP_696147.1 110801355 4203239 complement(1932814..1934205) 1 NC_008261.1 identified by similarity to GB:AAD35897.1; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1934205 4203239 CPF_1711 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_696147.1 1932814 R 195103 CDS YP_696148.1 110798782 4201119 complement(1934484..1936907) 1 NC_008261.1 hypothetical protein 1936907 4201119 CPF_1712 Clostridium perfringens ATCC 13124 hypothetical protein YP_696148.1 1934484 R 195103 CDS YP_696149.1 110799565 4203500 complement(1937175..1937585) 1 NC_008261.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1937585 4203500 CPF_1713 Clostridium perfringens ATCC 13124 FUR family transcriptional regulator YP_696149.1 1937175 R 195103 CDS YP_696150.1 110798853 4201481 complement(1937878..1938705) 1 NC_008261.1 identified by similarity to SP:P08188; match to protein family HMM PF03613; PTS system transporter subunit IID 1938705 4201481 CPF_1714 Clostridium perfringens ATCC 13124 PTS system transporter subunit IID YP_696150.1 1937878 R 195103 CDS YP_696151.1 110799518 4203180 complement(1938705..1939511) 1 NC_008261.1 identified by similarity to SP:P08187; match to protein family HMM PF03609; PTS system transporter subunit IIC 1939511 4203180 CPF_1715 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIC YP_696151.1 1938705 R 195103 CDS YP_696152.1 110800107 4202412 complement(1939665..1940162) 1 NC_008261.1 identified by similarity to SP:P37081; match to protein family HMM PF03830; PTS system transporter subunit IIB 1940162 4202412 CPF_1716 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIB YP_696152.1 1939665 R 195103 CDS YP_696153.1 110798882 4203417 complement(1940317..1940736) 1 NC_008261.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 1940736 4203417 CPF_1717 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIA YP_696153.1 1940317 R 195103 CDS YP_696154.1 110800460 4201543 1941146..1942348 1 NC_008261.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1942348 4201543 CPF_1718 Clostridium perfringens ATCC 13124 6-phosphofructokinase YP_696154.1 1941146 D 195103 CDS YP_696155.1 110798847 4201475 complement(1942407..1942772) 1 NC_008261.1 identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909; hypothetical protein 1942772 4201475 CPF_1719 Clostridium perfringens ATCC 13124 hypothetical protein YP_696155.1 1942407 R 195103 CDS YP_696156.1 110799453 4201538 complement(1943029..1944315) 1 NC_008261.1 identified by match to protein family HMM PF00266; class V aminotransferase 1944315 4201538 CPF_1720 Clostridium perfringens ATCC 13124 class V aminotransferase YP_696156.1 1943029 R 195103 CDS YP_696157.1 110801398 4203479 1944485..1946416 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1946416 4203479 CPF_1721 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696157.1 1944485 D 195103 CDS YP_696158.1 110801051 4202603 complement(1946580..1947044) 1 NC_008261.1 identified by match to protein family HMM PF00692; deoxyuridine 5'-triphosphate nucleotidohydrolase 1947044 dut 4202603 dut Clostridium perfringens ATCC 13124 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_696158.1 1946580 R 195103 CDS YP_696159.1 110801254 4203331 complement(1947179..1947769) 1 NC_008261.1 hypothetical protein 1947769 4203331 CPF_1723 Clostridium perfringens ATCC 13124 hypothetical protein YP_696159.1 1947179 R 195103 CDS YP_696160.1 110799172 4202912 complement(1947855..1948409) 1 NC_008261.1 identified by similarity to GB:AAP29334.1; hypothetical protein 1948409 4202912 CPF_1724 Clostridium perfringens ATCC 13124 hypothetical protein YP_696160.1 1947855 R 195103 CDS YP_696161.1 110799984 4201254 1948648..1949295 1 NC_008261.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1949295 4201254 CPF_1725 Clostridium perfringens ATCC 13124 hemolysin III YP_696161.1 1948648 D 195103 CDS YP_696162.1 110799268 4203063 complement(1949348..1950232) 1 NC_008261.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1950232 4203063 CPF_1726 Clostridium perfringens ATCC 13124 LysR family transcriptional regulator YP_696162.1 1949348 R 195103 CDS YP_696163.1 110798814 4201790 complement(1950244..1950528) 1 NC_008261.1 hypothetical protein 1950528 4201790 CPF_1727 Clostridium perfringens ATCC 13124 hypothetical protein YP_696163.1 1950244 R 195103 CDS YP_696164.1 110800399 4201831 1950704..1951420 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1951420 4201831 CPF_1728 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_696164.1 1950704 D 195103 CDS YP_696165.1 110799628 4201502 complement(1951437..1951973) 1 NC_008261.1 hypothetical protein 1951973 4201502 CPF_1729 Clostridium perfringens ATCC 13124 hypothetical protein YP_696165.1 1951437 R 195103 CDS YP_696166.1 110798747 4200947 complement(1952092..1952727) 1 NC_008261.1 identified by similarity to GB:AAO36152.1; hypothetical protein 1952727 4200947 CPF_1730 Clostridium perfringens ATCC 13124 hypothetical protein YP_696166.1 1952092 R 195103 CDS YP_696167.1 110801327 4201928 1952947..1954602 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; SulP family sulfate permease 1954602 4201928 CPF_1731 Clostridium perfringens ATCC 13124 SulP family sulfate permease YP_696167.1 1952947 D 195103 CDS YP_696168.1 110800588 4202354 complement(1954643..1954795) 1 NC_008261.1 hypothetical protein 1954795 4202354 CPF_1732 Clostridium perfringens ATCC 13124 hypothetical protein YP_696168.1 1954643 R 195103 CDS YP_696169.1 110799773 4203516 complement(1954872..1955837) 1 NC_008261.1 identified by match to protein family HMM PF00294; PfkB family kinase 1955837 4203516 CPF_1733 Clostridium perfringens ATCC 13124 PfkB family kinase YP_696169.1 1954872 R 195103 CDS YP_696170.1 110798959 4201372 complement(1955877..1956071) 1 NC_008261.1 identified by similarity to GB:AAO79751.1; hypothetical protein 1956071 4201372 CPF_1734 Clostridium perfringens ATCC 13124 hypothetical protein YP_696170.1 1955877 R 195103 CDS YP_696171.1 110799573 4203508 complement(1956329..1957657) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1957657 4203508 CPF_1735 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_696171.1 1956329 R 195103 CDS YP_696172.1 110798761 4201877 complement(1957678..1958364) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1958364 4201877 CPF_1736 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696172.1 1957678 R 195103 CDS YP_696173.1 110801260 4201567 complement(1958366..1959121) 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 1959121 4201567 CPF_1737 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696173.1 1958366 R 195103 CDS YP_696174.1 110800348 4202015 complement(1959096..1960064) 1 NC_008261.1 identified by similarity to GB:AAS10709.1; hypothetical protein 1960064 4202015 CPF_1738 Clostridium perfringens ATCC 13124 hypothetical protein YP_696174.1 1959096 R 195103 CDS YP_696175.1 110800479 4201953 complement(1960172..1960273) 1 NC_008261.1 hypothetical protein 1960273 4201953 CPF_1739 Clostridium perfringens ATCC 13124 hypothetical protein YP_696175.1 1960172 R 195103 CDS YP_696176.1 110801411 4203007 complement(1960347..1960532) 1 NC_008261.1 identified by similarity to PDB:1F2U_A; hypothetical protein 1960532 4203007 CPF_1740 Clostridium perfringens ATCC 13124 hypothetical protein YP_696176.1 1960347 R 195103 CDS YP_696177.1 110799261 4202085 complement(1960736..1961593) 1 NC_008261.1 hypothetical protein 1961593 4202085 CPF_1741 Clostridium perfringens ATCC 13124 hypothetical protein YP_696177.1 1960736 R 195103 CDS YP_696178.1 110799473 4201343 complement(1961697..1962473) 1 NC_008261.1 identified by similarity to GB:AAO80309.1; match to protein family HMM PF01925; hypothetical protein 1962473 4201343 CPF_1742 Clostridium perfringens ATCC 13124 hypothetical protein YP_696178.1 1961697 R 195103 CDS YP_696179.1 110800707 4203836 1962709..1963131 1 NC_008261.1 hypothetical protein 1963131 4203836 CPF_1743 Clostridium perfringens ATCC 13124 hypothetical protein YP_696179.1 1962709 D 195103 CDS YP_696180.1 110799757 4203655 complement(1963333..1963833) 1 NC_008261.1 DedA family membrane protein 1963833 4203655 CPF_1744 Clostridium perfringens ATCC 13124 DedA family membrane protein YP_696180.1 1963333 R 195103 CDS YP_696181.1 110798978 4201101 complement(1963928..1964425) 1 NC_008261.1 DedA family protein 1964425 4201101 CPF_1745 Clostridium perfringens ATCC 13124 DedA family protein YP_696181.1 1963928 R 195103 CDS YP_696182.1 110798619 4202746 complement(1964699..1965736) 1 NC_008261.1 identified by match to protein family HMM PF01171; PP-loop family protein 1965736 4202746 CPF_1746 Clostridium perfringens ATCC 13124 PP-loop family protein YP_696182.1 1964699 R 195103 CDS YP_696183.1 110801054 4202606 1965937..1966206 1 NC_008261.1 ACT domain-containing protein; hypothetical protein 1966206 4202606 CPF_1747 Clostridium perfringens ATCC 13124 hypothetical protein YP_696183.1 1965937 D 195103 CDS YP_696184.1 110800574 4202340 1966223..1967575 1 NC_008261.1 identified by similarity to GB:AAF42001.1; match to protein family HMM PF05167; hypothetical protein 1967575 4202340 CPF_1748 Clostridium perfringens ATCC 13124 hypothetical protein YP_696184.1 1966223 D 195103 CDS YP_696185.1 110799371 4203636 complement(1967787..1968290) 1 NC_008261.1 identified by similarity to GB:AAO36815.1; match to protein family HMM PF06177; hypothetical protein 1968290 4203636 CPF_1749 Clostridium perfringens ATCC 13124 hypothetical protein YP_696185.1 1967787 R 195103 CDS YP_696186.1 110798930 4200994 complement(1968615..1969490) 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1969490 4200994 CPF_1750 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_696186.1 1968615 R 195103 CDS YP_696187.1 110801372 4203452 complement(1969661..1970983) 1 NC_008261.1 identified by similarity to PIR:S60140; match to protein family HMM PF02518; sensor histidine kinase VirS 1970983 virS 4203452 virS Clostridium perfringens ATCC 13124 sensor histidine kinase VirS YP_696187.1 1969661 R 195103 CDS YP_696188.1 110801070 4201744 complement(1970977..1971687) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 1971687 4201744 CPF_1752 Clostridium perfringens ATCC 13124 LytTr family DNA-binding response regulator YP_696188.1 1970977 R 195103 CDS YP_696189.1 110800924 4202107 complement(1971826..1972839) 1 NC_008261.1 identified by similarity to SP:Q02114; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1972839 4202107 CPF_1753 Clostridium perfringens ATCC 13124 N-acetylmuramoyl-L-alanine amidase YP_696189.1 1971826 R 195103 CDS YP_696190.1 110799198 4202390 complement(1972936..1973223) 1 NC_008261.1 identified by similarity to PIR:C97072; match to protein family HMM PF01910; hypothetical protein 1973223 4202390 CPF_1754 Clostridium perfringens ATCC 13124 hypothetical protein YP_696190.1 1972936 R 195103 CDS YP_696191.1 110799815 4203693 complement(1973447..1974460) 1 NC_008261.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 1974460 4203693 CPF_1755 Clostridium perfringens ATCC 13124 hypothetical protein YP_696191.1 1973447 R 195103 CDS YP_696192.1 110801122 4201623 complement(1974886..1976184) 1 NC_008261.1 identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter 1976184 4201623 CPF_1756 Clostridium perfringens ATCC 13124 uracil transporter YP_696192.1 1974886 R 195103 CDS YP_696193.1 110799630 4201504 1976372..1977955 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1977955 4201504 CPF_1757 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696193.1 1976372 D 195103 CDS YP_696194.1 110800120 4203887 complement(1978006..1978968) 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1978968 4203887 CPF_1758 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_696194.1 1978006 R 195103 CDS YP_696195.1 110799218 4201223 complement(1979260..1980975) 1 NC_008261.1 identified by match to protein family HMM PF02012; BNR/Asp-box repeat-containing protein 1980975 4201223 CPF_1759 Clostridium perfringens ATCC 13124 BNR/Asp-box repeat-containing protein YP_696195.1 1979260 R 195103 CDS YP_696196.1 110801342 4203225 complement(1981288..1983483) 1 NC_008261.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1983483 topB 4203225 topB Clostridium perfringens ATCC 13124 DNA topoisomerase III YP_696196.1 1981288 R 195103 CDS YP_696197.1 110798995 4201855 complement(1983571..1984989) 1 NC_008261.1 identified by match to protein family HMM PF03703; hypothetical protein 1984989 4201855 CPF_1761 Clostridium perfringens ATCC 13124 hypothetical protein YP_696197.1 1983571 R 195103 CDS YP_696198.1 110799793 4202659 complement(1984999..1985466) 1 NC_008261.1 identified by match to protein family HMM PF03703; hypothetical protein 1985466 4202659 CPF_1762 Clostridium perfringens ATCC 13124 hypothetical protein YP_696198.1 1984999 R 195103 CDS YP_696199.1 110799790 4202656 complement(1985610..1985978) 1 NC_008261.1 hypothetical protein 1985978 4202656 CPF_1763 Clostridium perfringens ATCC 13124 hypothetical protein YP_696199.1 1985610 R 195103 CDS YP_696200.1 110800980 4202299 complement(1986215..1989496) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495; sensor histidine kinase/response regulator 1989496 4202299 CPF_1764 Clostridium perfringens ATCC 13124 sensor histidine kinase/response regulator YP_696200.1 1986215 R 195103 CDS YP_696201.1 110798839 4201467 complement(1989578..1990678) 1 NC_008261.1 identified by similarity to GB:AAO35207.1; hypothetical protein 1990678 4201467 CPF_1765 Clostridium perfringens ATCC 13124 hypothetical protein YP_696201.1 1989578 R 195103 CDS YP_696202.1 110799298 4202628 complement(1990693..1992060) 1 NC_008261.1 identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate biosynthesis protein AlgI 1992060 4202628 CPF_1766 Clostridium perfringens ATCC 13124 alginate biosynthesis protein AlgI YP_696202.1 1990693 R 195103 CDS YP_696203.1 110799450 4201535 complement(1992295..1992792) 1 NC_008261.1 lipoprotein 1992792 4201535 CPF_1767 Clostridium perfringens ATCC 13124 lipoprotein YP_696203.1 1992295 R 195103 CDS YP_696204.1 110800080 4202444 complement(1993044..1994261) 1 NC_008261.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1994261 4202444 CPF_1768 Clostridium perfringens ATCC 13124 DEAD/DEAH box helicase YP_696204.1 1993044 R 195103 CDS YP_696205.1 110801400 4203481 complement(1994285..1994596) 1 NC_008261.1 identified by similarity to GB:CAE77656.1; hypothetical protein 1994596 4203481 CPF_1769 Clostridium perfringens ATCC 13124 hypothetical protein YP_696205.1 1994285 R 195103 CDS YP_696206.1 110800649 4202007 complement(1994906..1996252) 1 NC_008261.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1996252 gdhA 4202007 gdhA Clostridium perfringens ATCC 13124 glutamate dehydrogenase YP_696206.1 1994906 R 195103 CDS YP_696207.1 110798990 4201113 complement(1996735..1997229) 1 NC_008261.1 hypothetical protein 1997229 4201113 CPF_1771 Clostridium perfringens ATCC 13124 hypothetical protein YP_696207.1 1996735 R 195103 CDS YP_696208.1 110800346 4202013 1997463..1998488 1 NC_008261.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1998488 ilvE 4202013 ilvE Clostridium perfringens ATCC 13124 branched-chain amino acid aminotransferase YP_696208.1 1997463 D 195103 CDS YP_696209.1 110800587 4202353 complement(1998532..1998945) 1 NC_008261.1 identified by similarity to GB:AAM31362.1; hypothetical protein 1998945 4202353 CPF_1773 Clostridium perfringens ATCC 13124 hypothetical protein YP_696209.1 1998532 R 195103 CDS YP_696210.1 110801234 4203311 complement(1998968..1999522) 1 NC_008261.1 hypothetical protein 1999522 4203311 CPF_1774 Clostridium perfringens ATCC 13124 hypothetical protein YP_696210.1 1998968 R 195103 CDS YP_696211.1 110799924 4201448 1999685..2000611 1 NC_008261.1 identified by similarity to PDB:1U24; phytase 2000611 4201448 CPF_1775 Clostridium perfringens ATCC 13124 phytase YP_696211.1 1999685 D 195103 CDS YP_696212.1 110800219 4202938 complement(2000732..2002501) 1 NC_008261.1 identified by similarity to GB:AAB08042.1; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 2002501 4202938 CPF_1776 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_696212.1 2000732 R 195103 CDS YP_696213.1 110800945 4203334 complement(2002536..2004257) 1 NC_008261.1 identified by similarity to GB:AAB08041.1; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 2004257 4203334 CPF_1777 Clostridium perfringens ATCC 13124 ABC transporter permease/ATP-binding protein YP_696213.1 2002536 R 195103 CDS YP_696214.1 110800264 4201851 complement(2004877..2005635) 1 NC_008261.1 hypothetical protein 2005635 4201851 CPF_1778 Clostridium perfringens ATCC 13124 hypothetical protein YP_696214.1 2004877 R 195103 CDS YP_696215.1 110800768 4201754 complement(2005855..2006214) 1 NC_008261.1 hypothetical protein 2006214 4201754 CPF_1779 Clostridium perfringens ATCC 13124 hypothetical protein YP_696215.1 2005855 R 195103 CDS YP_696216.1 110799805 4203683 2006482..2007819 1 NC_008261.1 lipoprotein 2007819 4203683 CPF_1780 Clostridium perfringens ATCC 13124 lipoprotein YP_696216.1 2006482 D 195103 CDS YP_696217.1 110800601 4203575 complement(2007886..2008302) 1 NC_008261.1 hypothetical protein 2008302 4203575 CPF_1781 Clostridium perfringens ATCC 13124 hypothetical protein YP_696217.1 2007886 R 195103 CDS YP_696218.1 110800445 4202365 complement(2008522..2009469) 1 NC_008261.1 identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294; fructokinase 2009469 4202365 CPF_1782 Clostridium perfringens ATCC 13124 fructokinase YP_696218.1 2008522 R 195103 CDS YP_696219.1 110801242 4203319 complement(2009462..2010925) 1 NC_008261.1 identified by similarity to SP:P07819; match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate dehydrogenase 2010925 4203319 CPF_1783 Clostridium perfringens ATCC 13124 sucrose-6-phosphate dehydrogenase YP_696219.1 2009462 R 195103 CDS YP_696220.1 110799640 4202505 complement(2010965..2011912) 1 NC_008261.1 identified by similarity to SP:P74892; match to protein family HMM PF00532; sucrose operon repressor 2011912 scrR 4202505 scrR Clostridium perfringens ATCC 13124 sucrose operon repressor YP_696220.1 2010965 R 195103 CDS YP_696221.1 110799103 4202823 complement(2012076..2013428) 1 NC_008261.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996; PTS system, sucrose-specific IIBC component 2013428 4202823 CPF_1785 Clostridium perfringens ATCC 13124 PTS system, sucrose-specific IIBC component YP_696221.1 2012076 R 195103 CDS YP_696222.1 110798668 4202307 complement(2013752..2014378) 1 NC_008261.1 identified by similarity to PIR:B96903; hypothetical protein 2014378 4202307 CPF_1786 Clostridium perfringens ATCC 13124 hypothetical protein YP_696222.1 2013752 R 195103 CDS YP_696223.1 110800509 4203364 complement(2014894..2015940) 1 NC_008261.1 identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C 2015940 4203364 CPF_1787 Clostridium perfringens ATCC 13124 anaerobic sulfite reductase subunit C YP_696223.1 2014894 R 195103 CDS YP_696224.1 110798571 4202717 complement(2015953..2016744) 1 NC_008261.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2016744 4202717 CPF_1788 Clostridium perfringens ATCC 13124 anaerobic sulfite reductase subunit B YP_696224.1 2015953 R 195103 CDS YP_696225.1 110798684 4202206 complement(2016745..2017776) 1 NC_008261.1 identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910; anaerobic sulfite reductase subunit A 2017776 4202206 CPF_1789 Clostridium perfringens ATCC 13124 anaerobic sulfite reductase subunit A YP_696225.1 2016745 R 195103 CDS YP_696226.1 110799939 4201463 2018036..2018446 1 NC_008261.1 identified by similarity to GB:AAK80322.1; hypothetical protein 2018446 4201463 CPF_1790 Clostridium perfringens ATCC 13124 hypothetical protein YP_696226.1 2018036 D 195103 CDS YP_696227.1 110800532 4201188 complement(2018543..2019727) 1 NC_008261.1 identified by match to protein family HMM PF02687; ABC transporter permease 2019727 4201188 CPF_1791 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696227.1 2018543 R 195103 CDS YP_696228.1 110801151 4201011 complement(2019714..2020415) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2020415 4201011 CPF_1792 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696228.1 2019714 R 195103 CDS YP_696229.1 110798901 4202132 complement(2020405..2021535) 1 NC_008261.1 hypothetical protein 2021535 4202132 CPF_1793 Clostridium perfringens ATCC 13124 hypothetical protein YP_696229.1 2020405 R 195103 CDS YP_696230.1 110799488 4202332 complement(2021762..2022448) 1 NC_008261.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2022448 bioD 4202332 bioD Clostridium perfringens ATCC 13124 dithiobiotin synthetase YP_696230.1 2021762 R 195103 CDS YP_696231.1 110798852 4201480 complement(2022451..2023410) 1 NC_008261.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2023410 bioB 4201480 bioB Clostridium perfringens ATCC 13124 biotin synthase YP_696231.1 2022451 R 195103 CDS YP_696232.1 110800794 4202230 complement(2024185..2025291) 1 NC_008261.1 identified by similarity to PIR:D97239; match to protein family HMM PF06207; hypothetical protein 2025291 4202230 CPF_1797 Clostridium perfringens ATCC 13124 hypothetical protein YP_696232.1 2024185 R 195103 CDS YP_696233.1 110801191 4203112 complement(2029106..2031094) 1 NC_008261.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase 2031094 4203112 CPF_1799 Clostridium perfringens ATCC 13124 molybdopterin oxidoreductase YP_696233.1 2029106 R 195103 CDS YP_696234.1 110800480 4201954 2031504..2032598 1 NC_008261.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2032598 prs 4201954 prs Clostridium perfringens ATCC 13124 phosphoribosylpyrophosphate synthetase YP_696234.1 2031504 D 195103 CDS YP_696235.1 110801112 4203287 complement(2032650..2033711) 1 NC_008261.1 identified by similarity to GB:AAS39397.1; hypothetical protein 2033711 4203287 CPF_1801 Clostridium perfringens ATCC 13124 hypothetical protein YP_696235.1 2032650 R 195103 CDS YP_696236.1 110800487 4201961 complement(2033922..2034920) 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2034920 4201961 CPF_1802 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_696236.1 2033922 R 195103 CDS YP_696237.1 110799982 4201252 complement(2035132..2037099) 1 NC_008261.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 2037099 pulA 4201252 pulA Clostridium perfringens ATCC 13124 pullulanase YP_696237.1 2035132 R 195103 CDS YP_696238.1 110800529 4201185 2037275..2037811 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2037811 4201185 CPF_1804 Clostridium perfringens ATCC 13124 signal peptidase I YP_696238.1 2037275 D 195103 CDS YP_696239.1 110798813 4201789 complement(2037867..2038712) 1 NC_008261.1 lipoprotein 2038712 4201789 CPF_1805 Clostridium perfringens ATCC 13124 lipoprotein YP_696239.1 2037867 R 195103 CDS YP_696240.1 110800017 4203938 complement(2038821..2039090) 1 NC_008261.1 hypothetical protein 2039090 4203938 CPF_1806 Clostridium perfringens ATCC 13124 hypothetical protein YP_696240.1 2038821 R 195103 CDS YP_696241.1 110799104 4202824 complement(2039285..2041300) 1 NC_008261.1 identified by match to protein family HMM PF00884; hypothetical protein 2041300 4202824 CPF_1807 Clostridium perfringens ATCC 13124 hypothetical protein YP_696241.1 2039285 R 195103 CDS YP_696242.1 110801391 4203472 complement(2041602..2042552) 1 NC_008261.1 identified by similarity to PIR:C97206; match to protein family HMM PF06081; hypothetical protein 2042552 4203472 CPF_1808 Clostridium perfringens ATCC 13124 hypothetical protein YP_696242.1 2041602 R 195103 CDS YP_696243.1 110800504 4203359 2042700..2043341 1 NC_008261.1 identified by match to protein family HMM PF01255; undecaprenyl diphosphate synthase 2043341 4203359 CPF_1809 Clostridium perfringens ATCC 13124 undecaprenyl diphosphate synthase YP_696243.1 2042700 D 195103 CDS YP_696244.1 110801106 4203281 2043346..2044845 1 NC_008261.1 identified by similarity to SP:P22871; match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase 2044845 4203281 CPF_1810 Clostridium perfringens ATCC 13124 phytoene dehydrogenase YP_696244.1 2043346 D 195103 CDS YP_696245.1 110800454 4202374 complement(2044877..2046568) 1 NC_008261.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254; diguanylate cyclase 2046568 4202374 CPF_1811 Clostridium perfringens ATCC 13124 diguanylate cyclase YP_696245.1 2044877 R 195103 CDS YP_696246.1 110799901 4203917 complement(2046628..2046762) 1 NC_008261.1 lipoprotein 2046762 4203917 CPF_1812 Clostridium perfringens ATCC 13124 lipoprotein YP_696246.1 2046628 R 195103 CDS YP_696247.1 110798934 4200998 complement(2046783..2047427) 1 NC_008261.1 identified by match to protein family HMM PF04647; accessory gene regulator protein B 2047427 4200998 CPF_1813 Clostridium perfringens ATCC 13124 accessory gene regulator protein B YP_696247.1 2046783 R 195103 CDS YP_696248.1 110801047 4202599 complement(2047429..2047890) 1 NC_008261.1 identified by similarity to GB:AAM23836.1; hypothetical protein 2047890 4202599 CPF_1814 Clostridium perfringens ATCC 13124 hypothetical protein YP_696248.1 2047429 R 195103 CDS YP_696249.1 110800246 4202770 complement(2047907..2048473) 1 NC_008261.1 identified by similarity to SP:P58010; hypothetical protein 2048473 4202770 CPF_1815 Clostridium perfringens ATCC 13124 hypothetical protein YP_696249.1 2047907 R 195103 CDS YP_696250.1 110799416 4201170 complement(2048625..2049128) 1 NC_008261.1 DedA family membrane protein 2049128 4201170 CPF_1816 Clostridium perfringens ATCC 13124 DedA family membrane protein YP_696250.1 2048625 R 195103 CDS YP_696251.1 110798646 4202694 complement(2049445..2050440) 1 NC_008261.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; calcium/proton exchanger 2050440 cax 4202694 cax Clostridium perfringens ATCC 13124 calcium/proton exchanger YP_696251.1 2049445 R 195103 CDS YP_696252.1 110799334 4202197 complement(2050570..2051649) 1 NC_008261.1 identified by match to protein family HMM PF00817; DNA polymerase IV 2051649 dinB 4202197 dinB Clostridium perfringens ATCC 13124 DNA polymerase IV YP_696252.1 2050570 R 195103 CDS YP_696253.1 110798721 4202418 complement(2051792..2052379) 1 NC_008261.1 identified by similarity to SP:P35137; match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 2052379 4202418 CPF_1819 Clostridium perfringens ATCC 13124 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_696253.1 2051792 R 195103 CDS YP_696254.1 110799145 4200976 complement(2052602..2053006) 1 NC_008261.1 hypothetical protein 2053006 4200976 CPF_1820 Clostridium perfringens ATCC 13124 hypothetical protein YP_696254.1 2052602 R 195103 CDS YP_696255.1 110801386 4203467 complement(2053123..2053953) 1 NC_008261.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 2053953 4203467 CPF_1821 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_696255.1 2053123 R 195103 CDS YP_696256.1 110801080 4202849 complement(2054256..2054969) 1 NC_008261.1 identified by similarity to SP:P23853; match to protein family HMM PF04012; phage shock protein A 2054969 pspA 4202849 pspA Clostridium perfringens ATCC 13124 phage shock protein A YP_696256.1 2054256 R 195103 CDS YP_696257.1 110798846 4201474 complement(2055055..2055756) 1 NC_008261.1 lipoprotein 2055756 4201474 CPF_1823 Clostridium perfringens ATCC 13124 lipoprotein YP_696257.1 2055055 R 195103 CDS YP_696258.1 110798953 4202184 2055902..2056567 1 NC_008261.1 identified by similarity to PIR:B96938; hypothetical protein 2056567 4202184 CPF_1824 Clostridium perfringens ATCC 13124 hypothetical protein YP_696258.1 2055902 D 195103 CDS YP_696259.1 110799753 4203651 complement(2056706..2059042) 1 NC_008261.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 2059042 gshAB 4203651 gshAB Clostridium perfringens ATCC 13124 bifunctional glutamate--cysteine ligase/glutathione synthetase YP_696259.1 2056706 R 195103 CDS YP_696260.1 110801183 4203104 complement(2059439..2060356) 1 NC_008261.1 identified by match to protein family HMM PF01734; patatin family phospholipase 2060356 4203104 CPF_1826 Clostridium perfringens ATCC 13124 patatin family phospholipase YP_696260.1 2059439 R 195103 CDS YP_696261.1 110799876 4202998 complement(2060503..2061792) 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 2061792 4202998 CPF_1827 Clostridium perfringens ATCC 13124 xanthine/uracil permease YP_696261.1 2060503 R 195103 CDS YP_696262.1 110798710 4201316 complement(2062044..2062412) 1 NC_008261.1 identified by similarity to GB:AAO34773.1; match to protein family HMM PF02629; hypothetical protein 2062412 4201316 CPF_1828 Clostridium perfringens ATCC 13124 hypothetical protein YP_696262.1 2062044 R 195103 CDS YP_696263.1 110799128 4203058 complement(2062609..2063562) 1 NC_008261.1 identified by match to protein family HMM PF02653; ABC transporter permease 2063562 4203058 CPF_1829 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696263.1 2062609 R 195103 CDS YP_696264.1 110801390 4203471 complement(2063562..2064659) 1 NC_008261.1 identified by match to protein family HMM PF02653; ABC transporter permease 2064659 4203471 CPF_1830 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696264.1 2063562 R 195103 CDS YP_696265.1 110799286 4202616 complement(2064649..2066184) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2066184 4202616 CPF_1831 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696265.1 2064649 R 195103 CDS YP_696266.1 110799032 4201288 complement(2066325..2067437) 1 NC_008261.1 identified by match to protein family HMM PF02608; Bmp family lipoprotein 2067437 4201288 CPF_1832 Clostridium perfringens ATCC 13124 Bmp family lipoprotein YP_696266.1 2066325 R 195103 CDS YP_696267.1 110801312 4201913 complement(2067992..2068813) 1 NC_008261.1 identified by similarity to SP:P18773; esterase 2068813 4201913 CPF_1833 Clostridium perfringens ATCC 13124 esterase YP_696267.1 2067992 R 195103 CDS YP_696268.1 110800706 4203835 complement(2069241..2070062) 1 NC_008261.1 identified by match to protein family HMM PF02361; cobalt ABC transporter permease 2070062 4203835 CPF_1834 Clostridium perfringens ATCC 13124 cobalt ABC transporter permease YP_696268.1 2069241 R 195103 CDS YP_696269.1 110798697 4202219 complement(2070071..2071777) 1 NC_008261.1 identified by similarity to SP:Q8XK20; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 2071777 4202219 CPF_1835 Clostridium perfringens ATCC 13124 cobalt ABC transporter ATP-binding protein YP_696269.1 2070071 R 195103 CDS YP_696270.1 110800458 4202378 complement(2071923..2072480) 1 NC_008261.1 identified by match to protein family HMM PF07155; hypothetical protein 2072480 4202378 CPF_1836 Clostridium perfringens ATCC 13124 hypothetical protein YP_696270.1 2071923 R 195103 CDS YP_696271.1 110798794 4201131 2072700..2073152 1 NC_008261.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 2073152 4201131 CPF_1837 Clostridium perfringens ATCC 13124 rhodanese domain-containing protein YP_696271.1 2072700 D 195103 CDS YP_696272.1 110799350 4203088 complement(2073198..2073521) 1 NC_008261.1 hypothetical protein 2073521 4203088 CPF_1838 Clostridium perfringens ATCC 13124 hypothetical protein YP_696272.1 2073198 R 195103 CDS YP_696273.1 110800805 4202241 complement(2073663..2076857) 1 NC_008261.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 2076857 4202241 CPF_1839 Clostridium perfringens ATCC 13124 pullulanase YP_696273.1 2073663 R 195103 CDS YP_696274.1 110801294 4201895 complement(2076957..2078936) 1 NC_008261.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2078936 glgB 4201895 glgB Clostridium perfringens ATCC 13124 glycogen branching protein YP_696274.1 2076957 R 195103 CDS YP_696275.1 110799030 4202280 complement(2079031..2079738) 1 NC_008261.1 hypothetical protein 2079738 4202280 CPF_1841 Clostridium perfringens ATCC 13124 hypothetical protein YP_696275.1 2079031 R 195103 CDS YP_696276.1 110799659 4202583 2079978..2080748 1 NC_008261.1 identified by similarity to PIR:C97179; match to protein family HMM PF06738; hypothetical protein 2080748 4202583 CPF_1842 Clostridium perfringens ATCC 13124 hypothetical protein YP_696276.1 2079978 D 195103 CDS YP_696277.1 110801160 4201020 2080745..2081236 1 NC_008261.1 hypothetical protein 2081236 4201020 CPF_1843 Clostridium perfringens ATCC 13124 hypothetical protein YP_696277.1 2080745 D 195103 CDS YP_696278.1 110798911 4202142 complement(2081429..2082196) 1 NC_008261.1 hypothetical protein 2082196 4202142 CPF_1844 Clostridium perfringens ATCC 13124 hypothetical protein YP_696278.1 2081429 R 195103 CDS YP_696279.1 110799546 4202643 complement(2082544..2083731) 1 NC_008261.1 identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; FmtC domain-containing protein 2083731 4202643 CPF_1845 Clostridium perfringens ATCC 13124 FmtC domain-containing protein YP_696279.1 2082544 R 195103 CDS YP_696280.1 110800166 4203563 complement(2083775..2084254) 1 NC_008261.1 hypothetical protein 2084254 4203563 CPF_1846 Clostridium perfringens ATCC 13124 hypothetical protein YP_696280.1 2083775 R 195103 CDS YP_696281.1 110800104 4202409 complement(2084427..2084750) 1 NC_008261.1 identified by match to protein family HMM PF00085; thioredoxin 2084750 4202409 CPF_1847 Clostridium perfringens ATCC 13124 thioredoxin YP_696281.1 2084427 R 195103 CDS YP_696282.1 110800746 4201423 complement(2084846..2085805) 1 NC_008261.1 identified by similarity to GB:AAB68821.1; match to protein family HMM PF05448; acetylxylan esterase 2085805 axe1 4201423 axe1 Clostridium perfringens ATCC 13124 acetylxylan esterase YP_696282.1 2084846 R 195103 CDS YP_696283.1 110799970 4203752 2086247..2087107 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2087107 4203752 CPF_1849 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_696283.1 2086247 D 195103 CDS YP_696284.1 110799036 4201292 2087271..2088062 1 NC_008261.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 2088062 4201292 CPF_1850 Clostridium perfringens ATCC 13124 CAAX amino terminal protease YP_696284.1 2087271 D 195103 CDS YP_696285.1 110799483 4202327 complement(2088252..2088680) 1 NC_008261.1 identified by similarity to GB:AAO34823.1; hypothetical protein 2088680 4202327 CPF_1851 Clostridium perfringens ATCC 13124 hypothetical protein YP_696285.1 2088252 R 195103 CDS YP_696286.1 110800085 4202449 complement(2088792..2089373) 1 NC_008261.1 identified by similarity to SP:P25053; match to protein family HMM PF02581; thiamine monophosphate synthase 2089373 4202449 CPF_1852 Clostridium perfringens ATCC 13124 thiamine monophosphate synthase YP_696286.1 2088792 R 195103 CDS YP_696287.1 110800869 4203863 complement(2089404..2090507) 1 NC_008261.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2090507 thiH 4203863 thiH Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiH YP_696287.1 2089404 R 195103 CDS YP_696288.1 110799070 4201038 complement(2090520..2091284) 1 NC_008261.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2091284 thiG 4201038 thiG Clostridium perfringens ATCC 13124 thiazole synthase YP_696288.1 2090520 R 195103 CDS YP_696289.1 110800335 4202099 complement(2091413..2092012) 1 NC_008261.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 2092012 thiF 4202099 thiF Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiF YP_696289.1 2091413 R 195103 CDS YP_696290.1 110799351 4203089 complement(2092292..2092486) 1 NC_008261.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2092486 thiS 4203089 thiS Clostridium perfringens ATCC 13124 thiamine biosynthesis protein ThiS YP_696290.1 2092292 R 195103 CDS YP_696291.1 110798704 4201310 complement(2092764..2094464) 1 NC_008261.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 2094464 4201310 CPF_1857 Clostridium perfringens ATCC 13124 major facilitator transporter YP_696291.1 2092764 R 195103 CDS YP_696292.1 110800709 4203838 complement(2094798..2095604) 1 NC_008261.1 identified by match to protein family HMM PF04607; GTP pyrophosphokinase 2095604 4203838 CPF_1858 Clostridium perfringens ATCC 13124 GTP pyrophosphokinase YP_696292.1 2094798 R 195103 CDS YP_696293.1 110799087 4201055 complement(2095647..2095955) 1 NC_008261.1 identified by similarity to GB:AAO35994.1; hypothetical protein 2095955 4201055 CPF_1859 Clostridium perfringens ATCC 13124 hypothetical protein YP_696293.1 2095647 R 195103 CDS YP_696294.1 110799668 4202592 complement(2096013..2096456) 1 NC_008261.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2096456 msrB 4202592 msrB Clostridium perfringens ATCC 13124 methionine sulfoxide reductase B YP_696294.1 2096013 R 195103 CDS YP_696295.1 110798976 4201099 complement(2096532..2097179) 1 NC_008261.1 identified by similarity to PIR:B96903; hypothetical protein 2097179 4201099 CPF_1861 Clostridium perfringens ATCC 13124 hypothetical protein YP_696295.1 2096532 R 195103 CDS YP_696296.1 110798944 4202175 2097329..2097628 1 NC_008261.1 hypothetical protein 2097628 4202175 CPF_1862 Clostridium perfringens ATCC 13124 hypothetical protein YP_696296.1 2097329 D 195103 CDS YP_696297.1 110799789 4202655 complement(2097676..2098650) 1 NC_008261.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2098650 4202655 CPF_1863 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_696297.1 2097676 R 195103 CDS YP_696298.1 110801378 4203459 complement(2098891..2099160) 1 NC_008261.1 hypothetical protein 2099160 4203459 CPF_1864 Clostridium perfringens ATCC 13124 hypothetical protein YP_696298.1 2098891 R 195103 CDS YP_696299.1 110798627 4201680 2099263..2099916 1 NC_008261.1 DedA family membrane protein 2099916 4201680 CPF_1865 Clostridium perfringens ATCC 13124 DedA family membrane protein YP_696299.1 2099263 D 195103 CDS YP_696300.1 110799441 4201525 complement(2099985..2100350) 1 NC_008261.1 hypothetical protein 2100350 4201525 CPF_1866 Clostridium perfringens ATCC 13124 hypothetical protein YP_696300.1 2099985 R 195103 CDS YP_696301.1 110798595 4201240 complement(2100479..2101804) 1 NC_008261.1 identified by match to protein family HMM PF01551; peptidase, M23/M37 family protein 2101804 4201240 CPF_1867 Clostridium perfringens ATCC 13124 peptidase, M23/M37 family protein YP_696301.1 2100479 R 195103 CDS YP_696302.1 110799408 4201162 complement(2102011..2102223) 1 NC_008261.1 hypothetical protein 2102223 4201162 CPF_1868 Clostridium perfringens ATCC 13124 hypothetical protein YP_696302.1 2102011 R 195103 CDS YP_696303.1 110800149 4203546 2102375..2102563 1 NC_008261.1 hypothetical protein 2102563 4203546 CPF_1869 Clostridium perfringens ATCC 13124 hypothetical protein YP_696303.1 2102375 D 195103 CDS YP_696304.1 110800764 4201616 complement(2102916..2103311) 1 NC_008261.1 identified by similarity to PIR:D97030; hypothetical protein 2103311 4201616 CPF_1870 Clostridium perfringens ATCC 13124 hypothetical protein YP_696304.1 2102916 R 195103 CDS YP_696305.1 110799266 4203061 complement(2103326..2103583) 1 NC_008261.1 identified by similarity to GB:AAM24475.1; match to protein family HMM PF06949; hypothetical protein 2103583 4203061 CPF_1871 Clostridium perfringens ATCC 13124 hypothetical protein YP_696305.1 2103326 R 195103 CDS YP_696306.1 110799377 4203642 complement(2103600..2105891) 1 NC_008261.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 2105891 4203642 CPF_1872 Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase UvrD YP_696306.1 2103600 R 195103 CDS YP_696307.1 110800079 4202443 2106406..2106876 1 NC_008261.1 hypothetical protein 2106876 4202443 CPF_1873 Clostridium perfringens ATCC 13124 hypothetical protein YP_696307.1 2106406 D 195103 CDS YP_696308.1 110801140 4201000 complement(2106958..2107764) 1 NC_008261.1 identified by match to protein family HMM PF01545; cation efflux family protein 2107764 4201000 CPF_1874 Clostridium perfringens ATCC 13124 cation efflux family protein YP_696308.1 2106958 R 195103 CDS YP_696309.1 110799821 4203699 complement(2108033..2109028) 1 NC_008261.1 identified by similarity to GB:AAO35548.1; hypothetical protein 2109028 4203699 CPF_1875 Clostridium perfringens ATCC 13124 hypothetical protein YP_696309.1 2108033 R 195103 CDS YP_696310.1 110800623 4202253 2109170..2109835 1 NC_008261.1 identified by similarity to PIR:A97351; lipoprotein 2109835 4202253 CPF_1876 Clostridium perfringens ATCC 13124 lipoprotein YP_696310.1 2109170 D 195103 CDS YP_696311.1 110801404 4203485 2109948..2111873 1 NC_008261.1 hypothetical protein 2111873 4203485 CPF_1877 Clostridium perfringens ATCC 13124 hypothetical protein YP_696311.1 2109948 D 195103 CDS YP_696312.1 110800752 4201604 complement(2112253..2115507) 1 NC_008261.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; Snf2/Rad54 family helicase 2115507 4201604 CPF_1878 Clostridium perfringens ATCC 13124 Snf2/Rad54 family helicase YP_696312.1 2112253 R 195103 CDS YP_696313.1 110800760 4201612 complement(2115606..2116139) 1 NC_008261.1 identified by match to protein family HMM PF00356; LacI family transcriptional regulator 2116139 4201612 CPF_1879 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_696313.1 2115606 R 195103 CDS YP_696314.1 110798946 4202177 complement(2117207..2118142) 1 NC_008261.1 identified by similarity to SP:P04984; match to protein family HMM PF02653; ribose ABC transporter permease 2118142 rbsC 4202177 rbsC Clostridium perfringens ATCC 13124 ribose ABC transporter permease YP_696314.1 2117207 R 195103 CDS YP_696315.1 110801212 4203133 complement(2118156..2119661) 1 NC_008261.1 identified by similarity to SP:P04983; match to protein family HMM PF00005; ribose ABC transporter ATP-binding protein 2119661 rbsA 4203133 rbsA Clostridium perfringens ATCC 13124 ribose ABC transporter ATP-binding protein YP_696315.1 2118156 R 195103 CDS YP_696316.1 110800947 4203336 complement(2119749..2120144) 1 NC_008261.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2120144 rbsD 4203336 rbsD Clostridium perfringens ATCC 13124 D-ribose pyranase YP_696316.1 2119749 R 195103 CDS YP_696317.1 110801422 4203018 complement(2120147..2121079) 1 NC_008261.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 2121079 rbsK 4203018 rbsK Clostridium perfringens ATCC 13124 ribokinase YP_696317.1 2120147 R 195103 CDS YP_696318.1 110800596 4203570 complement(2121220..2121687) 1 NC_008261.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 2121687 def 4203570 def Clostridium perfringens ATCC 13124 polypeptide deformylase YP_696318.1 2121220 R 195103 CDS YP_696319.1 110799306 4203142 complement(2121843..2122802) 1 NC_008261.1 identified by match to protein family HMM PF00953; glycoside hydrolase family protein 2122802 4203142 CPF_1886 Clostridium perfringens ATCC 13124 glycoside hydrolase family protein YP_696319.1 2121843 R 195103 CDS YP_696320.1 110800387 4201819 complement(2122948..2123514) 1 NC_008261.1 identified by match to protein family HMM PF01022; transcriptional regulatory protein 2123514 4201819 CPF_1887 Clostridium perfringens ATCC 13124 transcriptional regulatory protein YP_696320.1 2122948 R 195103 CDS YP_696321.1 110799634 4202499 complement(2123730..2124374) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 2124374 4202499 CPF_1888 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit D YP_696321.1 2123730 R 195103 CDS YP_696322.1 110799637 4202502 complement(2124377..2125759) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 2125759 4202502 CPF_1889 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit B YP_696322.1 2124377 R 195103 CDS YP_696323.1 110798759 4201875 complement(2125752..2127527) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 2127527 4201875 CPF_1890 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit A YP_696323.1 2125752 R 195103 CDS YP_696324.1 110800880 4203874 complement(2127544..2127861) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 2127861 4203874 CPF_1891 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit F YP_696324.1 2127544 R 195103 CDS YP_696325.1 110799396 4203271 complement(2127848..2128855) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C 2128855 4203271 CPF_1892 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit C YP_696325.1 2127848 R 195103 CDS YP_696326.1 110798597 4201242 complement(2128868..2129464) 1 NC_008261.1 identified by match to protein family HMM PF01991; V-type ATPase, E subunit 2129464 4201242 CPF_1893 Clostridium perfringens ATCC 13124 V-type ATPase, E subunit YP_696326.1 2128868 R 195103 CDS YP_696327.1 110799059 4202562 complement(2129495..2129989) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 2129989 4202562 CPF_1894 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit K YP_696327.1 2129495 R 195103 CDS YP_696328.1 110799711 4201195 complement(2130044..2131993) 1 NC_008261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 2131993 4201195 CPF_1895 Clostridium perfringens ATCC 13124 V-type ATP synthase subunit I YP_696328.1 2130044 R 195103 CDS YP_696329.1 110800999 4201674 complement(2131980..2132306) 1 NC_008261.1 identified by similarity to SP:P00859; match to protein family HMM TIGR02926; hypothetical protein 2132306 4201674 CPF_1896 Clostridium perfringens ATCC 13124 hypothetical protein YP_696329.1 2131980 R 195103 CDS YP_696330.1 110799375 4203640 complement(2132583..2134262) 1 NC_008261.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM domain-containing protein 2134262 4203640 CPF_1897 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_696330.1 2132583 R 195103 CDS YP_696331.1 110800726 4202473 complement(2134162..2134764) 1 NC_008261.1 identified by similarity to PIR:A97026; hypothetical protein 2134764 4202473 CPF_1898 Clostridium perfringens ATCC 13124 hypothetical protein YP_696331.1 2134162 R 195103 CDS YP_696332.1 110801366 4203250 complement(2134911..2136197) 1 NC_008261.1 identified by similarity to PIR:G97025; hypothetical protein 2136197 4203250 CPF_1899 Clostridium perfringens ATCC 13124 hypothetical protein YP_696332.1 2134911 R 195103 CDS YP_696333.1 110799140 4200971 2136345..2137874 1 NC_008261.1 identified by match to protein family HMM PF01943; match to protein family HMM TIGR02900; stage V sporulation protein B 2137874 spoVB 4200971 spoVB Clostridium perfringens ATCC 13124 stage V sporulation protein B YP_696333.1 2136345 D 195103 CDS YP_696334.1 110799540 4202637 complement(2137968..2138768) 1 NC_008261.1 hypothetical protein 2138768 4202637 CPF_1901 Clostridium perfringens ATCC 13124 hypothetical protein YP_696334.1 2137968 R 195103 CDS YP_696335.1 110800892 4202797 complement(2138878..2139720) 1 NC_008261.1 identified by similarity to PIR:G97101; hypothetical protein 2139720 4202797 CPF_1902 Clostridium perfringens ATCC 13124 hypothetical protein YP_696335.1 2138878 R 195103 CDS YP_696336.1 110800070 4203777 complement(2139732..2140235) 1 NC_008261.1 identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase 2140235 4203777 CPF_1903 Clostridium perfringens ATCC 13124 hexapeptide repeat-containing transferase YP_696336.1 2139732 R 195103 CDS YP_696337.1 110799019 4202269 2140484..2141485 1 NC_008261.1 hypothetical protein 2141485 4202269 CPF_1904 Clostridium perfringens ATCC 13124 hypothetical protein YP_696337.1 2140484 D 195103 CDS YP_696338.1 110801188 4203109 complement(2141513..2141845) 1 NC_008261.1 hypothetical protein 2141845 4203109 CPF_1905 Clostridium perfringens ATCC 13124 hypothetical protein YP_696338.1 2141513 R 195103 CDS YP_696339.1 110800536 4202888 2142083..2142553 1 NC_008261.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2142553 4202888 CPF_1906 Clostridium perfringens ATCC 13124 AsnC family transcriptional regulator YP_696339.1 2142083 D 195103 CDS YP_696340.1 110798620 4202747 2142660..2142863 1 NC_008261.1 identified by similarity to PIR:E97020; match to protein family HMM PF04070; hypothetical protein 2142863 4202747 CPF_1907 Clostridium perfringens ATCC 13124 hypothetical protein YP_696340.1 2142660 D 195103 CDS YP_696341.1 110799265 4203060 complement(2142911..2144617) 1 NC_008261.1 hypothetical protein 2144617 4203060 CPF_1908 Clostridium perfringens ATCC 13124 hypothetical protein YP_696341.1 2142911 R 195103 CDS YP_696342.1 110801066 4201740 complement(2144592..2144738) 1 NC_008261.1 hypothetical protein 2144738 4201740 CPF_1909 Clostridium perfringens ATCC 13124 hypothetical protein YP_696342.1 2144592 R 195103 CDS YP_696343.1 110800263 4201850 2144855..2145709 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2145709 4201850 CPF_1910 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_696343.1 2144855 D 195103 CDS YP_696344.1 110799439 4201523 complement(2145765..2146448) 1 NC_008261.1 identified by similarity to GB:AAO35559.1; hypothetical protein 2146448 4201523 CPF_1911 Clostridium perfringens ATCC 13124 hypothetical protein YP_696344.1 2145765 R 195103 CDS YP_696345.1 110799736 4203167 2146607..2146852 1 NC_008261.1 identified by match to protein family HMM PF04023; ferrous iron transport protein 2146852 4203167 CPF_1912 Clostridium perfringens ATCC 13124 ferrous iron transport protein YP_696345.1 2146607 D 195103 CDS YP_696346.1 110798573 4202719 2146890..2148653 1 NC_008261.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2148653 feoB 4202719 feoB Clostridium perfringens ATCC 13124 ferrous iron transport protein B YP_696346.1 2146890 D 195103 CDS YP_696347.1 110801083 4202852 2148668..2148817 1 NC_008261.1 hypothetical protein 2148817 4202852 CPF_1914 Clostridium perfringens ATCC 13124 hypothetical protein YP_696347.1 2148668 D 195103 CDS YP_696348.1 110798607 4202734 complement(2148863..2150560) 1 NC_008261.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2150560 argS 4202734 argS Clostridium perfringens ATCC 13124 arginyl-tRNA synthetase YP_696348.1 2148863 R 195103 CDS YP_696349.1 110800146 4203543 2151042..2152550 1 NC_008261.1 identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 2152550 4203543 CPF_1916 Clostridium perfringens ATCC 13124 Ppx/GppA phosphatase YP_696349.1 2151042 D 195103 CDS YP_696350.1 110800625 4202255 complement(2152648..2153862) 1 NC_008261.1 identified by similarity to SP:P19579; CapA domain-containing protein 2153862 4202255 CPF_1917 Clostridium perfringens ATCC 13124 CapA domain-containing protein YP_696350.1 2152648 R 195103 CDS YP_696351.1 110799013 4202263 complement(2154028..2154648) 1 NC_008261.1 identified by match to protein family HMM PF02163; M50 family peptidase 2154648 4202263 CPF_1918 Clostridium perfringens ATCC 13124 M50 family peptidase YP_696351.1 2154028 R 195103 CDS YP_696352.1 110800819 4201089 complement(2154852..2156231) 1 NC_008261.1 identified by match to protein family HMM PF02562; PhoH family protein 2156231 4201089 CPF_1919 Clostridium perfringens ATCC 13124 PhoH family protein YP_696352.1 2154852 R 195103 CDS YP_696353.1 110800096 4202401 2156453..2157067 1 NC_008261.1 identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon 2157067 4202401 CPF_1920 Clostridium perfringens ATCC 13124 DNA polymerase III subunit epsilon YP_696353.1 2156453 D 195103 CDS YP_696354.1 110799829 4203727 complement(2157104..2157433) 1 NC_008261.1 identified by match to protein family HMM PF00436; single-strand DNA binding protein 2157433 4203727 CPF_1921 Clostridium perfringens ATCC 13124 single-strand DNA binding protein YP_696354.1 2157104 R 195103 CDS YP_696355.1 110799469 4201339 complement(2157713..2159143) 1 NC_008261.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2159143 purB 4201339 purB Clostridium perfringens ATCC 13124 adenylosuccinate lyase YP_696355.1 2157713 R 195103 CDS YP_696356.1 110799187 4202379 complement(2159386..2159646) 1 NC_008261.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; HPr family phosphocarrier protein 2159646 4202379 CPF_1923 Clostridium perfringens ATCC 13124 HPr family phosphocarrier protein YP_696356.1 2159386 R 195103 CDS YP_696357.1 110798729 4202426 complement(2159741..2160934) 1 NC_008261.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2160934 aspB 4202426 aspB Clostridium perfringens ATCC 13124 aspartate aminotransferase YP_696357.1 2159741 R 195103 CDS YP_696358.1 110801017 4201362 complement(2161087..2161347) 1 NC_008261.1 identified by match to protein family HMM PF04232; stage V sporulation protein S 2161347 spoVS 4201362 spoVS Clostridium perfringens ATCC 13124 stage V sporulation protein S YP_696358.1 2161087 R 195103 CDS YP_696359.1 110800228 4202752 complement(2161565..2163100) 1 NC_008261.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2163100 4202752 CPF_1926 Clostridium perfringens ATCC 13124 phosphodiesterase YP_696359.1 2161565 R 195103 CDS YP_696360.1 110799772 4203515 complement(2163448..2164506) 1 NC_008261.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2164506 recA 4203515 recA Clostridium perfringens ATCC 13124 recombinase A YP_696360.1 2163448 R 195103 CDS YP_696361.1 110798824 4202483 complement(2164642..2165232) 1 NC_008261.1 identified by similarity to SP:P46322; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2165232 pgsA 4202483 pgsA Clostridium perfringens ATCC 13124 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_696361.1 2164642 R 195103 CDS YP_696362.2 261876147 4202610 complement(2165216..2166553) 1 NC_008261.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein 2166553 4202610 CPF_1929 Clostridium perfringens ATCC 13124 tRNA modifying protein YP_696362.2 2165216 R 195103 CDS YP_696363.1 110800054 4203722 complement(2166622..2169012) 1 NC_008261.1 identified by similarity to SP:P21458; match to protein family HMM PF01580; DNA translocase FtsK 2169012 ftsK 4203722 ftsK Clostridium perfringens ATCC 13124 DNA translocase FtsK YP_696363.1 2166622 R 195103 CDS YP_696364.1 110799331 4202194 complement(2169144..2169833) 1 NC_008261.1 identified by match to protein family HMM PF00574; Clp protease 2169833 clpP 4202194 clpP Clostridium perfringens ATCC 13124 Clp protease YP_696364.1 2169144 R 195103 CDS YP_696365.1 110798780 4201117 complement(2169887..2171083) 1 NC_008261.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase 2171083 4201117 CPF_1932 Clostridium perfringens ATCC 13124 aspartate kinase YP_696365.1 2169887 R 195103 CDS YP_696366.1 110801345 4203228 complement(2171097..2171372) 1 NC_008261.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 2171372 4203228 CPF_1933 Clostridium perfringens ATCC 13124 PRC-barrel domain-containing protein YP_696366.1 2171097 R 195103 CDS YP_696367.1 110799658 4202582 complement(2171507..2173615) 1 NC_008261.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 2173615 pnpA 4202582 pnpA Clostridium perfringens ATCC 13124 polynucleotide phosphorylase YP_696367.1 2171507 R 195103 CDS YP_696368.1 110799206 4202398 complement(2173707..2173970) 1 NC_008261.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2173970 rpsO 4202398 rpsO Clostridium perfringens ATCC 13124 30S ribosomal protein S15 YP_696368.1 2173707 R 195103 CDS YP_696369.1 110798760 4201876 complement(2174086..2175015) 1 NC_008261.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 2175015 ribF 4201876 ribF Clostridium perfringens ATCC 13124 bifunctional riboflavin kinase/FMN adenylyltransferase YP_696369.1 2174086 R 195103 CDS YP_696370.1 110799626 4201500 complement(2175019..2175903) 1 NC_008261.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2175903 truB 4201500 truB Clostridium perfringens ATCC 13124 tRNA pseudouridine synthase B YP_696370.1 2175019 R 195103 CDS YP_696371.1 110800883 4203877 complement(2175907..2176860) 1 NC_008261.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 2176860 4203877 CPF_1938 Clostridium perfringens ATCC 13124 DHH subfamily 1 protein YP_696371.1 2175907 R 195103 CDS YP_696372.1 110800717 4202464 complement(2176864..2177214) 1 NC_008261.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2177214 rbfA 4202464 rbfA Clostridium perfringens ATCC 13124 ribosome-binding factor A YP_696372.1 2176864 R 195103 CDS YP_696373.1 110799694 4203378 complement(2177236..2179275) 1 NC_008261.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2179275 infB 4203378 infB Clostridium perfringens ATCC 13124 translation initiation factor IF-2 YP_696373.1 2177236 R 195103 CDS YP_696374.1 110799303 4203139 complement(2179306..2179608) 1 NC_008261.1 identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein 2179608 4203139 CPF_1941 Clostridium perfringens ATCC 13124 ribosomal protein L7Ae family protein YP_696374.1 2179306 R 195103 CDS YP_696375.1 110801360 4203244 complement(2179601..2179867) 1 NC_008261.1 identified by similarity to PIR:B97122; match to protein family HMM PF04296; hypothetical protein 2179867 4203244 CPF_1942 Clostridium perfringens ATCC 13124 hypothetical protein YP_696375.1 2179601 R 195103 CDS YP_696376.1 110800366 4201975 complement(2179895..2180995) 1 NC_008261.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 2180995 nusA 4201975 nusA Clostridium perfringens ATCC 13124 transcription elongation factor NusA YP_696376.1 2179895 R 195103 CDS YP_696377.1 110799296 4202626 complement(2181015..2181479) 1 NC_008261.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2181479 4202626 CPF_1944 Clostridium perfringens ATCC 13124 hypothetical protein YP_696377.1 2181015 R 195103 CDS YP_696378.1 110799061 4202564 complement(2181712..2186061) 1 NC_008261.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 2186061 polC 4202564 polC Clostridium perfringens ATCC 13124 DNA polymerase III PolC YP_696378.1 2181712 R 195103 CDS YP_696379.1 110800593 4202359 complement(2186139..2187188) 1 NC_008261.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2187188 ispG 4202359 ispG Clostridium perfringens ATCC 13124 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_696379.1 2186139 R 195103 CDS YP_696380.1 110801002 4201347 complement(2187208..2188215) 1 NC_008261.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 2188215 4201347 CPF_1947 Clostridium perfringens ATCC 13124 membrane-associated zinc metalloprotease YP_696380.1 2187208 R 195103 CDS YP_696381.1 110799236 4201805 complement(2188227..2189381) 1 NC_008261.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2189381 dxr 4201805 dxr Clostridium perfringens ATCC 13124 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_696381.1 2188227 R 195103 CDS YP_696382.2 261876161 4203200 complement(2189741..2190544) 1 NC_008261.1 identified by similarity to SP:O31752; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 2190544 cdsA 4203200 cdsA Clostridium perfringens ATCC 13124 phosphatidate cytidylyltransferase YP_696382.2 2189741 R 195103 CDS YP_696383.1 110801370 4203254 complement(2190553..2191314) 1 NC_008261.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 2191314 uppS 4203254 uppS Clostridium perfringens ATCC 13124 undecaprenyl pyrophosphate synthase YP_696383.1 2190553 R 195103 CDS YP_696384.1 110800605 4203579 complement(2191379..2191936) 1 NC_008261.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2191936 frr 4203579 frr Clostridium perfringens ATCC 13124 ribosome recycling factor YP_696384.1 2191379 R 195103 CDS YP_696385.1 110799372 4203637 complement(2191950..2192663) 1 NC_008261.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2192663 pyrH 4203637 pyrH Clostridium perfringens ATCC 13124 uridylate kinase YP_696385.1 2191950 R 195103 CDS YP_696386.1 110801026 4201938 complement(2192756..2193667) 1 NC_008261.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2193667 tsf 4201938 tsf Clostridium perfringens ATCC 13124 elongation factor Ts YP_696386.1 2192756 R 195103 CDS YP_696387.1 110800337 4202101 complement(2193747..2194448) 1 NC_008261.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2194448 rpsB 4202101 rpsB Clostridium perfringens ATCC 13124 30S ribosomal protein S2 YP_696387.1 2193747 R 195103 CDS YP_696388.1 110801201 4203122 complement(2194831..2195607) 1 NC_008261.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 2195607 codY 4203122 codY Clostridium perfringens ATCC 13124 transcriptional repressor CodY YP_696388.1 2194831 R 195103 CDS YP_696389.1 110800343 4202010 complement(2195749..2197851) 1 NC_008261.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2197851 topA 4202010 topA Clostridium perfringens ATCC 13124 DNA topoisomerase I YP_696389.1 2195749 R 195103 CDS YP_696390.1 110799380 4203255 complement(2197896..2198978) 1 NC_008261.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2198978 dprA 4203255 dprA Clostridium perfringens ATCC 13124 DNA protecting protein DprA YP_696390.1 2197896 R 195103 CDS YP_696391.1 110798594 4201239 complement(2198979..2200502) 1 NC_008261.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2200502 4201239 CPF_1958 Clostridium perfringens ATCC 13124 Mg chelatase-like protein YP_696391.1 2198979 R 195103 CDS YP_696392.1 110801050 4202602 2200632..2201000 1 NC_008261.1 identified by similarity to SP:Q895L7; match to protein family HMM PF02021; hypothetical protein 2201000 4202602 CPF_1959 Clostridium perfringens ATCC 13124 hypothetical protein YP_696392.1 2200632 D 195103 CDS YP_696393.1 110800212 4202931 complement(2201001..2201819) 1 NC_008261.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2201819 rnhB 4202931 rnhB Clostridium perfringens ATCC 13124 ribonuclease HII YP_696393.1 2201001 R 195103 CDS YP_696394.1 110799613 4201487 complement(2201835..2202680) 1 NC_008261.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2202680 rbgA 4201487 rbgA Clostridium perfringens ATCC 13124 ribosomal biogenesis GTPase YP_696394.1 2201835 R 195103 CDS YP_696395.1 110801220 4203297 complement(2202827..2203174) 1 NC_008261.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2203174 rplS 4203297 rplS Clostridium perfringens ATCC 13124 50S ribosomal protein L19 YP_696395.1 2202827 R 195103 CDS YP_696396.1 110799681 4201728 complement(2203295..2204005) 1 NC_008261.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2204005 trmD 4201728 trmD Clostridium perfringens ATCC 13124 tRNA (guanine-N(1)-)-methyltransferase YP_696396.1 2203295 R 195103 CDS YP_696397.1 110800602 4203576 complement(2203995..2204492) 1 NC_008261.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2204492 rimM 4203576 rimM Clostridium perfringens ATCC 13124 16S rRNA-processing protein RimM YP_696397.1 2203995 R 195103 CDS YP_696398.1 110798705 4201311 complement(2204548..2204775) 1 NC_008261.1 identified by similarity to SP:Q97I96; hypothetical protein 2204775 4201311 CPF_1965 Clostridium perfringens ATCC 13124 hypothetical protein YP_696398.1 2204548 R 195103 CDS YP_696399.1 110799336 4202199 complement(2204819..2205064) 1 NC_008261.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2205064 rpsP 4202199 rpsP Clostridium perfringens ATCC 13124 30S ribosomal protein S16 YP_696399.1 2204819 R 195103 CDS YP_696400.1 110800465 4201548 complement(2205098..2206456) 1 NC_008261.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 2206456 ffh 4201548 ffh Clostridium perfringens ATCC 13124 signal recognition particle protein YP_696400.1 2205098 R 195103 CDS YP_696401.1 110798769 4201885 complement(2206468..2206806) 1 NC_008261.1 identified by match to protein family HMM PF04297; DNA-binding protein 2206806 4201885 CPF_1968 Clostridium perfringens ATCC 13124 DNA-binding protein YP_696401.1 2206468 R 195103 CDS YP_696402.1 110800008 4203850 complement(2206981..2207895) 1 NC_008261.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 2207895 ftsY 4203850 ftsY Clostridium perfringens ATCC 13124 signal recognition particle-docking protein FtsY YP_696402.1 2206981 R 195103 CDS YP_696403.1 110800938 4202121 complement(2207909..2211466) 1 NC_008261.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 2211466 smc 4202121 smc Clostridium perfringens ATCC 13124 chromosome segregation protein SMC YP_696403.1 2207909 R 195103 CDS YP_696404.1 110800781 4201767 complement(2211671..2212744) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2212744 4201767 CPF_1971 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_696404.1 2211671 R 195103 CDS YP_696405.1 110798679 4202318 complement(2212723..2213448) 1 NC_008261.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2213448 rnc 4202318 rnc Clostridium perfringens ATCC 13124 ribonuclease III YP_696405.1 2212723 R 195103 CDS YP_696406.1 110799127 4203057 complement(2213535..2213765) 1 NC_008261.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2213765 acpP 4203057 acpP Clostridium perfringens ATCC 13124 acyl carrier protein YP_696406.1 2213535 R 195103 CDS YP_696407.1 110801240 4203317 complement(2213842..2214861) 1 NC_008261.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2214861 plsX 4203317 plsX Clostridium perfringens ATCC 13124 glycerol-3-phosphate acyltransferase PlsX YP_696407.1 2213842 R 195103 CDS YP_696408.1 110800374 4201983 complement(2214919..2215101) 1 NC_008261.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2215101 rpmF 4201983 rpmF Clostridium perfringens ATCC 13124 50S ribosomal protein L32 YP_696408.1 2214919 R 195103 CDS YP_696409.1 110799605 4203405 complement(2215117..2215611) 1 NC_008261.1 identified by similarity to GB:AAB18302.1; match to protein family HMM PF02620; hypothetical protein 2215611 4203405 CPF_1976 Clostridium perfringens ATCC 13124 hypothetical protein YP_696409.1 2215117 R 195103 CDS YP_696410.1 110798835 4202494 complement(2215731..2216927) 1 NC_008261.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2216927 ackA 4202494 ackA Clostridium perfringens ATCC 13124 acetate kinase YP_696410.1 2215731 R 195103 CDS YP_696411.1 110799517 4203179 complement(2217018..2218019) 1 NC_008261.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2218019 eutD 4203179 eutD Clostridium perfringens ATCC 13124 phosphotransacetylase YP_696411.1 2217018 R 195103 CDS YP_696412.1 110801329 4201930 2218254..2219462 1 NC_008261.1 identified by similarity to PIR:H97114; match to protein family HMM PF05636; hypothetical protein 2219462 4201930 CPF_1979 Clostridium perfringens ATCC 13124 hypothetical protein YP_696412.1 2218254 D 195103 CDS YP_696413.1 110800512 4203367 2219527..2220687 1 NC_008261.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871; sporulation integral membrane protein YlbJ 2220687 ylbJ 4203367 ylbJ Clostridium perfringens ATCC 13124 sporulation integral membrane protein YlbJ YP_696413.1 2219527 D 195103 CDS YP_696414.1 110799368 4203633 complement(2220670..2221200) 1 NC_008261.1 identified by similarity to GB:AAO35803.1; hypothetical protein 2221200 4203633 CPF_1980 Clostridium perfringens ATCC 13124 hypothetical protein YP_696414.1 2220670 R 195103 CDS YP_696415.1 110798570 4202716 complement(2221209..2221703) 1 NC_008261.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2221703 coaD 4202716 coaD Clostridium perfringens ATCC 13124 phosphopantetheine adenylyltransferase YP_696415.1 2221209 R 195103 CDS YP_696416.1 110800994 4201669 complement(2221705..2222262) 1 NC_008261.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 2222262 4201669 CPF_1983 Clostridium perfringens ATCC 13124 methyltransferase YP_696416.1 2221705 R 195103 CDS YP_696417.1 110799799 4202665 complement(2222327..2224399) 1 NC_008261.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2224399 recG 4202665 recG Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase RecG YP_696417.1 2222327 R 195103 CDS YP_696418.1 110799755 4203653 complement(2224553..2226199) 1 NC_008261.1 identified by match to protein family HMM PF02734; DAK2 domain-containing protein 2226199 4203653 CPF_1985 Clostridium perfringens ATCC 13124 DAK2 domain-containing protein YP_696418.1 2224553 R 195103 CDS YP_696419.1 110798966 4201379 complement(2226213..2226560) 1 NC_008261.1 identified by similarity to GB:AAO35798.1; match to protein family HMM PF03780; hypothetical protein 2226560 4201379 CPF_1986 Clostridium perfringens ATCC 13124 hypothetical protein YP_696419.1 2226213 R 195103 CDS YP_696420.1 110801060 4202612 2226820..2227011 1 NC_008261.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2227011 rpmB 4202612 rpmB Clostridium perfringens ATCC 13124 50S ribosomal protein L28 YP_696420.1 2226820 D 195103 CDS YP_696421.1 110799686 4201733 complement(2227254..2227883) 1 NC_008261.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 2227883 4201733 CPF_1988 Clostridium perfringens ATCC 13124 thiamine pyrophosphokinase YP_696421.1 2227254 R 195103 CDS YP_696422.1 110800106 4202411 complement(2227885..2228538) 1 NC_008261.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2228538 rpe 4202411 rpe Clostridium perfringens ATCC 13124 ribulose-phosphate 3-epimerase YP_696422.1 2227885 R 195103 CDS YP_696423.1 110799288 4202618 complement(2228538..2229401) 1 NC_008261.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2229401 rsgA 4202618 rsgA Clostridium perfringens ATCC 13124 ribosome-associated GTPase YP_696423.1 2228538 R 195103 CDS YP_696424.1 110798996 4201856 complement(2229638..2231716) 1 NC_008261.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714; protein kinase 2231716 4201856 CPF_1991 Clostridium perfringens ATCC 13124 protein kinase YP_696424.1 2229638 R 195103 CDS YP_696425.1 110801302 4201903 complement(2231718..2232437) 1 NC_008261.1 identified by match to protein family HMM PF00481; protein phosphatase 2C 2232437 4201903 CPF_1992 Clostridium perfringens ATCC 13124 protein phosphatase 2C YP_696425.1 2231718 R 195103 CDS YP_696426.1 110801148 4201008 complement(2232450..2233493) 1 NC_008261.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2233493 4201008 CPF_1993 Clostridium perfringens ATCC 13124 ribosomal RNA large subunit methyltransferase N YP_696426.1 2232450 R 195103 CDS YP_696427.1 110800441 4202361 complement(2233525..2234853) 1 NC_008261.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 2234853 sun 4202361 sun Clostridium perfringens ATCC 13124 ribosomal RNA small subunit methyltransferase B YP_696427.1 2233525 R 195103 CDS YP_696428.1 110798926 4200990 complement(2234864..2235559) 1 NC_008261.1 identified by match to protein family HMM PF04298; neutral zinc metallopeptidase 2235559 4200990 CPF_1995 Clostridium perfringens ATCC 13124 neutral zinc metallopeptidase YP_696428.1 2234864 R 195103 CDS YP_696429.1 110800829 4203921 complement(2235577..2236506) 1 NC_008261.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2236506 fmt 4203921 fmt Clostridium perfringens ATCC 13124 methionyl-tRNA formyltransferase YP_696429.1 2235577 R 195103 CDS YP_696430.1 110799951 4203791 complement(2236526..2236969) 1 NC_008261.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2236969 def 4203791 def Clostridium perfringens ATCC 13124 peptide deformylase YP_696430.1 2236526 R 195103 CDS YP_696431.1 110798841 4201469 complement(2236983..2239178) 1 NC_008261.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 2239178 priA 4201469 priA Clostridium perfringens ATCC 13124 primosome assembly protein PriA YP_696431.1 2236983 R 195103 CDS YP_696432.1 110799232 4201801 complement(2239217..2240404) 1 NC_008261.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2240404 coaBC 4201801 coaBC Clostridium perfringens ATCC 13124 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_696432.1 2239217 R 195103 CDS YP_696433.1 110799897 4203913 complement(2240410..2240622) 1 NC_008261.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2240622 rpoZ 4203913 rpoZ Clostridium perfringens ATCC 13124 DNA-directed RNA polymerase subunit omega YP_696433.1 2240410 R 195103 CDS YP_696434.1 110798787 4201124 complement(2240603..2241253) 1 NC_008261.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2241253 gmk 4201124 gmk Clostridium perfringens ATCC 13124 guanylate kinase YP_696434.1 2240603 R 195103 CDS YP_696435.1 110799022 4202272 complement(2241243..2241512) 1 NC_008261.1 identified by similarity to SP:Q97ID1; match to protein family HMM PF04025; hypothetical protein 2241512 4202272 CPF_2002 Clostridium perfringens ATCC 13124 hypothetical protein YP_696435.1 2241243 R 195103 CDS YP_696436.1 110799599 4203398 complement(2241526..2242410) 1 NC_008261.1 identified by similarity to GB:AAO35784.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 2242410 4203398 CPF_2003 Clostridium perfringens ATCC 13124 hypothetical protein YP_696436.1 2241526 R 195103 CDS YP_696437.1 110799866 4202988 complement(2242630..2244027) 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 2244027 4202988 CPF_2004 Clostridium perfringens ATCC 13124 xanthine/uracil permease YP_696437.1 2242630 R 195103 CDS YP_696438.1 110799253 4202077 complement(2244285..2245268) 1 NC_008261.1 identified by match to protein family HMM PF00710; L-asparaginase 2245268 4202077 CPF_2005 Clostridium perfringens ATCC 13124 L-asparaginase YP_696438.1 2244285 R 195103 CDS YP_696439.1 110801043 4202595 complement(2245619..2247094) 1 NC_008261.1 identified by similarity to SP:P35149; match to protein family HMM TIGR02836; stage IV sporulation protein A 2247094 spoIVA 4202595 spoIVA Clostridium perfringens ATCC 13124 stage IV sporulation protein A YP_696439.1 2245619 R 195103 CDS YP_696440.1 110798734 4202431 complement(2247427..2248422) 1 NC_008261.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2248422 gpsA 4202431 gpsA Clostridium perfringens ATCC 13124 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_696440.1 2247427 R 195103 CDS YP_696441.1 110798819 4202478 complement(2248427..2249743) 1 NC_008261.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2249743 engA 4202478 engA Clostridium perfringens ATCC 13124 GTP-binding protein EngA YP_696441.1 2248427 R 195103 CDS YP_696442.1 110800057 4203764 complement(2249746..2251083) 1 NC_008261.1 identified by similarity to PIR:A97111; match to protein family HMM PF04459; hypothetical protein 2251083 4203764 CPF_2009 Clostridium perfringens ATCC 13124 hypothetical protein YP_696442.1 2249746 R 195103 CDS YP_696443.1 110801347 4203230 complement(2251410..2253125) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2253125 4203230 CPF_2010 Clostridium perfringens ATCC 13124 sensory box histidine kinase YP_696443.1 2251410 R 195103 CDS YP_696444.1 110800721 4202468 complement(2253139..2253843) 1 NC_008261.1 identified by similarity to PIR:F97109; match to protein family HMM PF02578; hypothetical protein 2253843 4202468 CPF_2011 Clostridium perfringens ATCC 13124 hypothetical protein YP_696444.1 2253139 R 195103 CDS YP_696445.1 110799685 4201732 complement(2254009..2254458) 1 NC_008261.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 2254458 nrdR 4201732 nrdR Clostridium perfringens ATCC 13124 transcriptional regulator NrdR YP_696445.1 2254009 R 195103 CDS YP_696446.1 110799094 4202814 complement(2254520..2254792) 1 NC_008261.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 2254792 4202814 CPF_2013 Clostridium perfringens ATCC 13124 PRC-barrel domain-containing protein YP_696446.1 2254520 R 195103 CDS YP_696447.1 110799379 4203644 complement(2254933..2255706) 1 NC_008261.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 2255706 sigG 4203644 sigG Clostridium perfringens ATCC 13124 sporulation sigma factor SigG YP_696447.1 2254933 R 195103 CDS YP_696448.1 110798939 4202170 complement(2255781..2256488) 1 NC_008261.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 2256488 sigE 4202170 sigE Clostridium perfringens ATCC 13124 sporulation sigma factor SigE YP_696448.1 2255781 R 195103 CDS YP_696449.1 110799534 4203196 complement(2256502..2257308) 1 NC_008261.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854; sporulation factor SpoIIGA 2257308 spoIIGA 4203196 spoIIGA Clostridium perfringens ATCC 13124 sporulation factor SpoIIGA YP_696449.1 2256502 R 195103 CDS YP_696450.1 110800142 4203539 complement(2257346..2257540) 1 NC_008261.1 hypothetical protein 2257540 4203539 CPF_2017 Clostridium perfringens ATCC 13124 hypothetical protein YP_696450.1 2257346 R 195103 CDS YP_696451.1 110799691 4203375 complement(2257713..2258858) 1 NC_008261.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2258858 ftsZ 4203375 ftsZ Clostridium perfringens ATCC 13124 cell division protein FtsZ YP_696451.1 2257713 R 195103 CDS YP_696452.1 110800662 4201706 complement(2258872..2260110) 1 NC_008261.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 2260110 ftsA 4201706 ftsA Clostridium perfringens ATCC 13124 cell division protein FtsA YP_696452.1 2258872 R 195103 CDS YP_696453.1 110798885 4203420 complement(2260188..2261240) 1 NC_008261.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 2261240 pilT 4203420 pilT Clostridium perfringens ATCC 13124 twitching motility protein PilT YP_696453.1 2260188 R 195103 CDS YP_696454.1 110799358 4203096 complement(2261421..2262122) 1 NC_008261.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 2262122 4203096 CPF_2021 Clostridium perfringens ATCC 13124 sporulation sigma factor SigK YP_696454.1 2261421 R 195103 CDS YP_696455.1 110800159 4203556 complement(2262185..2263852) 1 NC_008261.1 identified by match to protein family HMM PF00905; penicillin-binding protein 2263852 4203556 CPF_2022 Clostridium perfringens ATCC 13124 penicillin-binding protein YP_696455.1 2262185 R 195103 CDS YP_696456.1 110801353 4203237 complement(2263965..2264591) 1 NC_008261.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2264591 udk 4203237 udk Clostridium perfringens ATCC 13124 uridine kinase YP_696456.1 2263965 R 195103 CDS YP_696457.1 110799271 4203066 complement(2264591..2265820) 1 NC_008261.1 identified by match to protein family HMM PF01136; U32 family peptidase 2265820 4203066 CPF_2024 Clostridium perfringens ATCC 13124 U32 family peptidase YP_696457.1 2264591 R 195103 CDS YP_696458.1 110798639 4201692 complement(2265826..2266470) 1 NC_008261.1 identified by match to protein family HMM PF01596; O-methyltransferase 2266470 4201692 CPF_2025 Clostridium perfringens ATCC 13124 O-methyltransferase YP_696458.1 2265826 R 195103 CDS YP_696459.1 110800232 4202756 complement(2266486..2267487) 1 NC_008261.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2267487 4202756 CPF_2026 Clostridium perfringens ATCC 13124 hypothetical protein YP_696459.1 2266486 R 195103 CDS YP_696460.1 110798655 4202703 complement(2267657..2269489) 1 NC_008261.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 2269489 typA 4202703 typA Clostridium perfringens ATCC 13124 GTP-binding protein TypA YP_696460.1 2267657 R 195103 CDS YP_696461.1 110799451 4201536 complement(2269646..2271313) 1 NC_008261.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolising metallo-beta-lactamase 2271313 4201536 CPF_2028 Clostridium perfringens ATCC 13124 RNA-metabolising metallo-beta-lactamase YP_696461.1 2269646 R 195103 CDS YP_696462.1 110800648 4202006 complement(2271384..2271836) 1 NC_008261.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2271836 4202006 CPF_2029 Clostridium perfringens ATCC 13124 FUR family transcriptional regulator YP_696462.1 2271384 R 195103 CDS YP_696463.1 110801333 4203216 complement(2271857..2272111) 1 NC_008261.1 identified by similarity to PIR:D97107; match to protein family HMM PF06949; hypothetical protein 2272111 4203216 CPF_2030 Clostridium perfringens ATCC 13124 hypothetical protein YP_696463.1 2271857 R 195103 CDS YP_696464.1 110799090 4202810 complement(2272127..2272540) 1 NC_008261.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2272540 4202810 CPF_2031 Clostridium perfringens ATCC 13124 Holliday junction resolvase-like protein YP_696464.1 2272127 R 195103 CDS YP_696465.1 110799713 4201197 complement(2272588..2272845) 1 NC_008261.1 identified by similarity to SP:Q97IG2; match to protein family HMM PF06135; hypothetical protein 2272845 4201197 CPF_2032 Clostridium perfringens ATCC 13124 hypothetical protein YP_696465.1 2272588 R 195103 CDS YP_696466.1 110799076 4201044 complement(2272989..2275628) 1 NC_008261.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2275628 alaS 4201044 alaS Clostridium perfringens ATCC 13124 alanyl-tRNA synthetase YP_696466.1 2272989 R 195103 CDS YP_696467.1 110800448 4202368 complement(2277134..2277616) 1 NC_008261.1 identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 2277616 4202368 CPF_2036 Clostridium perfringens ATCC 13124 PRC-barrel domain-containing protein YP_696467.1 2277134 R 195103 CDS YP_696468.1 110801338 4203221 complement(2277896..2278975) 1 NC_008261.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2278975 mnmA 4203221 mnmA Clostridium perfringens ATCC 13124 tRNA-specific 2-thiouridylase MnmA YP_696468.1 2277896 R 195103 CDS YP_696469.1 110798682 4202204 complement(2279000..2279428) 1 NC_008261.1 identified by match to protein family HMM PF01592; FeS cluster assembly scaffold protein NifU 2279428 nifU 4202204 nifU Clostridium perfringens ATCC 13124 FeS cluster assembly scaffold protein NifU YP_696469.1 2279000 R 195103 CDS YP_696470.1 110800678 4202521 complement(2279431..2280627) 1 NC_008261.1 identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 2280627 iscS 4202521 iscS Clostridium perfringens ATCC 13124 cysteine desulfurase YP_696470.1 2279431 R 195103 CDS YP_696471.1 110800338 4202102 complement(2280620..2281081) 1 NC_008261.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 2281081 4202102 CPF_2040 Clostridium perfringens ATCC 13124 rrf2 family protein YP_696471.1 2280620 R 195103 CDS YP_696472.1 110800306 4202148 complement(2282660..2283529) 1 NC_008261.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2283529 4202148 CPF_2043 Clostridium perfringens ATCC 13124 diguanylate cyclase YP_696472.1 2282660 R 195103 CDS YP_696473.1 110800538 4202890 complement(2283744..2284172) 1 NC_008261.1 identified by match to protein family HMM PF03473; MOSC domain-containing protein 2284172 4202890 CPF_2044 Clostridium perfringens ATCC 13124 MOSC domain-containing protein YP_696473.1 2283744 R 195103 CDS YP_696474.1 110798850 4201478 complement(2284175..2285146) 1 NC_008261.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 2285146 moaA 4201478 moaA Clostridium perfringens ATCC 13124 molybdenum cofactor biosynthesis protein A YP_696474.1 2284175 R 195103 CDS YP_696475.1 110799247 4202071 complement(2285250..2286263) 1 NC_008261.1 identified by match to protein family HMM PF00994; molybdenum cofactor biosynthesis protein 2286263 4202071 CPF_2046 Clostridium perfringens ATCC 13124 molybdenum cofactor biosynthesis protein YP_696475.1 2285250 R 195103 CDS YP_696476.1 110799902 4203918 complement(2286381..2286977) 1 NC_008261.1 identified by similarity to SP:Q9WX94; molybdopterin-guanine dinucleotide biosynthesis protein 2286977 4203918 CPF_2047 Clostridium perfringens ATCC 13124 molybdopterin-guanine dinucleotide biosynthesis protein YP_696476.1 2286381 R 195103 CDS YP_696477.1 110800788 4202224 complement(2287022..2288242) 1 NC_008261.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein MoeA 2288242 moeA 4202224 moeA Clostridium perfringens ATCC 13124 molybdenum cofactor biosynthesis protein MoeA YP_696477.1 2287022 R 195103 CDS YP_696478.1 110799487 4202331 complement(2288581..2289051) 1 NC_008261.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 2289051 mobB 4202331 mobB Clostridium perfringens ATCC 13124 molybdopterin-guanine dinucleotide biosynthesis protein B YP_696478.1 2288581 R 195103 CDS YP_696479.1 110800143 4203540 complement(2289139..2290362) 1 NC_008261.1 identified by similarity to GB:BAA74793.1; match to protein family HMM PF00070; match to protein family HMM PF07992; nitrate reductase, NADH oxidase subunit 2290362 noxA 4203540 noxA Clostridium perfringens ATCC 13124 nitrate reductase, NADH oxidase subunit YP_696479.1 2289139 R 195103 CDS YP_696480.1 110799567 4203502 complement(2290364..2290777) 1 NC_008261.1 identified by match to protein family HMM PF00037; nitrate reductase electron transfer subunit 2290777 narB 4203502 narB Clostridium perfringens ATCC 13124 nitrate reductase electron transfer subunit YP_696480.1 2290364 R 195103 CDS YP_696481.1 110800988 4201663 complement(2290790..2292868) 1 NC_008261.1 identified by similarity to GB:BAA74791.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; nitrate reductase, catalytic subunit 2292868 narA 4201663 narA Clostridium perfringens ATCC 13124 nitrate reductase, catalytic subunit YP_696481.1 2290790 R 195103 CDS YP_696482.1 110800236 4202760 complement(2293154..2293582) 1 NC_008261.1 identified by similarity to GB:CAB13916.1; hypothetical protein 2293582 4202760 CPF_2053 Clostridium perfringens ATCC 13124 hypothetical protein YP_696482.1 2293154 R 195103 CDS YP_696483.1 110799761 4203659 complement(2293804..2295081) 1 NC_008261.1 identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; FAD dependent oxidoreductase 2295081 4203659 CPF_2054 Clostridium perfringens ATCC 13124 FAD dependent oxidoreductase YP_696483.1 2293804 R 195103 CDS YP_696484.1 110799015 4202265 complement(2295113..2296093) 1 NC_008261.1 identified by similarity to SP:P25983; hypothetical protein 2296093 4202265 CPF_2055 Clostridium perfringens ATCC 13124 hypothetical protein YP_696484.1 2295113 R 195103 CDS YP_696485.1 110800730 4201406 complement(2296338..2297213) 1 NC_008261.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2297213 4201406 CPF_2056 Clostridium perfringens ATCC 13124 D-alanyl-D-alanine carboxypeptidase YP_696485.1 2296338 R 195103 CDS YP_696486.1 110799720 4201204 2297361..2297933 1 NC_008261.1 identified by similarity to GB:AAO36077.1; hypothetical protein 2297933 4201204 CPF_2057 Clostridium perfringens ATCC 13124 hypothetical protein YP_696486.1 2297361 D 195103 CDS YP_696487.1 110799075 4201043 2297980..2298399 1 NC_008261.1 identified by similarity to GB:AAO36078.1; match to protein family HMM TIGR02874; hypothetical protein 2298399 4201043 CPF_2058 Clostridium perfringens ATCC 13124 hypothetical protein YP_696487.1 2297980 D 195103 CDS YP_696488.1 110798854 4201482 complement(2298728..2299315) 1 NC_008261.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 2299315 scpB 4201482 scpB Clostridium perfringens ATCC 13124 segregation and condensation protein B YP_696488.1 2298728 R 195103 CDS YP_696489.1 110800277 4203617 complement(2299308..2300054) 1 NC_008261.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 2300054 scpA 4203617 scpA Clostridium perfringens ATCC 13124 segregation and condensation protein A YP_696489.1 2299308 R 195103 CDS YP_696490.1 110799537 4202634 complement(2300325..2301533) 1 NC_008261.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 2301533 dacF 4202634 dacF Clostridium perfringens ATCC 13124 D-alanyl-D-alanine carboxypeptidase YP_696490.1 2300325 R 195103 CDS YP_696491.1 110799911 4203206 complement(2301785..2303086) 1 NC_008261.1 identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 2303086 pdp 4203206 pdp Clostridium perfringens ATCC 13124 pyrimidine-nucleoside phosphorylase YP_696491.1 2301785 R 195103 CDS YP_696492.1 110799101 4202821 complement(2303333..2304205) 1 NC_008261.1 identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 2304205 xerD 4202821 xerD Clostridium perfringens ATCC 13124 tyrosine recombinase XerD YP_696492.1 2303333 R 195103 CDS YP_696493.1 110798614 4202741 complement(2304255..2304875) 1 NC_008261.1 identified by similarity to SP:P37873; match to protein family HMM TIGR02831; sporulation protein 2304875 4202741 CPF_2064 Clostridium perfringens ATCC 13124 sporulation protein YP_696493.1 2304255 R 195103 CDS YP_696494.1 110801434 4203030 complement(2305009..2305539) 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2305539 4203030 CPF_2065 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_696494.1 2305009 R 195103 CDS YP_696495.1 110800258 4201845 complement(2305601..2305906) 1 NC_008261.1 hypothetical protein 2305906 4201845 CPF_2066 Clostridium perfringens ATCC 13124 hypothetical protein YP_696495.1 2305601 R 195103 CDS YP_696496.1 110799430 4202545 complement(2305983..2306813) 1 NC_008261.1 identified by similarity to GB:CAB87985.1; match to protein family HMM PF00072; match to protein family HMM TIGR02875; Spo0A protein 2306813 spo0A 4202545 spo0A Clostridium perfringens ATCC 13124 Spo0A protein YP_696496.1 2305983 R 195103 CDS YP_696497.1 110800995 4201670 complement(2306987..2308147) 1 NC_008261.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860; stage IV sporulation protein B 2308147 4201670 CPF_2068 Clostridium perfringens ATCC 13124 stage IV sporulation protein B YP_696497.1 2306987 R 195103 CDS YP_696498.1 110800023 4203944 complement(2308324..2310021) 1 NC_008261.1 identified by similarity to SP:P17894; match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 2310021 recN 4203944 recN Clostridium perfringens ATCC 13124 DNA repair protein RecN YP_696498.1 2308324 R 195103 CDS YP_696499.1 110798913 4202144 complement(2310037..2310489) 1 NC_008261.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 2310489 argR 4202144 argR Clostridium perfringens ATCC 13124 arginine repressor ArgR YP_696499.1 2310037 R 195103 CDS YP_696500.1 110798863 4201141 complement(2310512..2311342) 1 NC_008261.1 identified by match to protein family HMM PF01513; NAD(+)/NADH kinase 2311342 4201141 CPF_2071 Clostridium perfringens ATCC 13124 NAD(+)/NADH kinase YP_696500.1 2310512 R 195103 CDS YP_696501.1 110800396 4201828 complement(2311427..2312242) 1 NC_008261.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 2312242 4201828 CPF_2072 Clostridium perfringens ATCC 13124 hemolysin A YP_696501.1 2311427 R 195103 CDS YP_696502.1 110799458 4201328 complement(2312254..2314113) 1 NC_008261.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2314113 dxs 4201328 dxs Clostridium perfringens ATCC 13124 1-deoxy-D-xylulose-5-phosphate synthase YP_696502.1 2312254 R 195103 CDS YP_696503.1 110799631 4202496 complement(2314134..2315006) 1 NC_008261.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase 2315006 ispA 4202496 ispA Clostridium perfringens ATCC 13124 geranyltranstransferase YP_696503.1 2314134 R 195103 CDS YP_696504.1 110799184 4202924 complement(2314996..2315223) 1 NC_008261.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2315223 xseB 4202924 xseB Clostridium perfringens ATCC 13124 exodeoxyribonuclease VII small subunit YP_696504.1 2314996 R 195103 CDS YP_696505.1 110800889 4202794 complement(2315242..2316444) 1 NC_008261.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2316444 xseA 4202794 xseA Clostridium perfringens ATCC 13124 exodeoxyribonuclease VII large subunit YP_696505.1 2315242 R 195103 CDS YP_696506.1 110800457 4202377 complement(2316446..2317279) 1 NC_008261.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2317279 folD 4202377 folD Clostridium perfringens ATCC 13124 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_696506.1 2316446 R 195103 CDS YP_696507.1 110801167 4201027 complement(2317328..2317735) 1 NC_008261.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 2317735 nusB 4201027 nusB Clostridium perfringens ATCC 13124 transcription antitermination protein NusB YP_696507.1 2317328 R 195103 CDS YP_696508.1 110800544 4202896 complement(2317854..2318243) 1 NC_008261.1 identified by similarity to SP:Q53485; match to protein family HMM PF03780; alkaline shock protein 2318243 asp 4202896 asp Clostridium perfringens ATCC 13124 alkaline shock protein YP_696508.1 2317854 R 195103 CDS YP_696509.1 110799586 4202684 complement(2318328..2318825) 1 NC_008261.1 stage III sporulation protein AH 2318825 spoIIIAH 4202684 spoIIIAH Clostridium perfringens ATCC 13124 stage III sporulation protein AH YP_696509.1 2318328 R 195103 CDS YP_696510.1 110798910 4202141 complement(2318851..2319456) 1 NC_008261.1 identified by match to protein family HMM TIGR02830; stage III sporulation protein AG 2319456 4202141 CPF_2081 Clostridium perfringens ATCC 13124 stage III sporulation protein AG YP_696510.1 2318851 R 195103 CDS YP_696511.1 110800827 4203919 complement(2319471..2320028) 1 NC_008261.1 identified by match to protein family HMM TIGR02896; stage III sporulation protein AF 2320028 spoIIIAF 4203919 spoIIIAF Clostridium perfringens ATCC 13124 stage III sporulation protein AF YP_696511.1 2319471 R 195103 CDS YP_696512.1 110801013 4201358 complement(2320036..2321208) 1 NC_008261.1 identified by match to protein family HMM TIGR02829; stage III sporulation protein AE 2321208 4201358 CPF_2083 Clostridium perfringens ATCC 13124 stage III sporulation protein AE YP_696512.1 2320036 R 195103 CDS YP_696513.1 110799667 4202591 complement(2321219..2321605) 1 NC_008261.1 identified by match to protein family HMM TIGR02849; stage III sporulation protein AD 2321605 4202591 CPF_2084 Clostridium perfringens ATCC 13124 stage III sporulation protein AD YP_696513.1 2321219 R 195103 CDS YP_696514.1 110800652 4201696 complement(2321693..2321890) 1 NC_008261.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848; stage III sporulation protein AC 2321890 4201696 CPF_2085 Clostridium perfringens ATCC 13124 stage III sporulation protein AC YP_696514.1 2321693 R 195103 CDS YP_696515.1 110799751 4203649 complement(2321966..2322481) 1 NC_008261.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 2322481 4203649 CPF_2086 Clostridium perfringens ATCC 13124 stage III sporulation protein SpoAB YP_696515.1 2321966 R 195103 CDS YP_696516.1 110800786 4201772 complement(2322628..2323512) 1 NC_008261.1 identified by match to protein family HMM TIGR02858; stage III sporulation protein AA 2323512 4201772 CPF_2087 Clostridium perfringens ATCC 13124 stage III sporulation protein AA YP_696516.1 2322628 R 195103 CDS YP_696517.1 110798746 4200946 complement(2323710..2324072) 1 NC_008261.1 hypothetical protein 2324072 4200946 CPF_2088 Clostridium perfringens ATCC 13124 hypothetical protein YP_696517.1 2323710 R 195103 CDS YP_696518.1 110800261 4201848 complement(2324186..2324743) 1 NC_008261.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2324743 efp 4201848 efp Clostridium perfringens ATCC 13124 elongation factor P YP_696518.1 2324186 R 195103 CDS YP_696519.1 110799088 4201056 complement(2324914..2325261) 1 NC_008261.1 hypothetical protein 2325261 4201056 CPF_2090 Clostridium perfringens ATCC 13124 hypothetical protein YP_696519.1 2324914 R 195103 CDS YP_696520.1 110799695 4203379 complement(2325258..2325698) 1 NC_008261.1 hypothetical protein 2325698 4203379 CPF_2091 Clostridium perfringens ATCC 13124 hypothetical protein YP_696520.1 2325258 R 195103 CDS YP_696521.1 110800531 4201187 complement(2325658..2326275) 1 NC_008261.1 hypothetical protein 2326275 4201187 CPF_2092 Clostridium perfringens ATCC 13124 hypothetical protein YP_696521.1 2325658 R 195103 CDS YP_696522.1 110800569 4201440 complement(2326244..2326654) 1 NC_008261.1 type IV pilin 2326654 4201440 CPF_2093 Clostridium perfringens ATCC 13124 type IV pilin YP_696522.1 2326244 R 195103 CDS YP_696523.1 110801418 4203014 complement(2326641..2327012) 1 NC_008261.1 hypothetical protein 2327012 4203014 CPF_2094 Clostridium perfringens ATCC 13124 hypothetical protein YP_696523.1 2326641 R 195103 CDS YP_696524.1 110799644 4202510 complement(2327072..2327584) 1 NC_008261.1 hypothetical protein 2327584 4202510 CPF_2095 Clostridium perfringens ATCC 13124 hypothetical protein YP_696524.1 2327072 R 195103 CDS YP_696525.1 110799089 4201057 complement(2327604..2328032) 1 NC_008261.1 identified by match to protein family HMM TIGR02532; type IV pilin 2328032 4201057 CPF_2096 Clostridium perfringens ATCC 13124 type IV pilin YP_696525.1 2327604 R 195103 CDS YP_696526.1 110798866 4201144 complement(2328025..2329044) 1 NC_008261.1 identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482; pilus biogenesis protein 2329044 4201144 CPF_2097 Clostridium perfringens ATCC 13124 pilus biogenesis protein YP_696526.1 2328025 R 195103 CDS YP_696527.1 110801142 4201002 complement(2329031..2330419) 1 NC_008261.1 identified by match to protein family HMM PF00437; pilus biogenesis protein 2330419 4201002 CPF_2098 Clostridium perfringens ATCC 13124 pilus biogenesis protein YP_696527.1 2329031 R 195103 CDS YP_696528.1 110800052 4203720 complement(2330518..2331549) 1 NC_008261.1 lipoprotein 2331549 4203720 CPF_2099 Clostridium perfringens ATCC 13124 lipoprotein YP_696528.1 2330518 R 195103 CDS YP_696529.1 110799448 4201532 complement(2331566..2332384) 1 NC_008261.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2332384 dapF 4201532 dapF Clostridium perfringens ATCC 13124 diaminopimelate epimerase YP_696529.1 2331566 R 195103 CDS YP_696530.1 110800507 4203362 2332476..2334203 1 NC_008261.1 identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 2334203 4203362 CPF_2101 Clostridium perfringens ATCC 13124 fibronectin-binding protein YP_696530.1 2332476 D 195103 CDS YP_696531.1 110799710 4201194 complement(2334314..2335441) 1 NC_008261.1 identified by match to protein family HMM PF01170; methyltransferase 2335441 4201194 CPF_2102 Clostridium perfringens ATCC 13124 methyltransferase YP_696531.1 2334314 R 195103 CDS YP_696532.1 110799245 4202069 complement(2335461..2335997) 1 NC_008261.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2335997 pyrR 4202069 pyrR Clostridium perfringens ATCC 13124 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_696532.1 2335461 R 195103 CDS YP_696533.1 110801362 4203246 complement(2336001..2336921) 1 NC_008261.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 2336921 4203246 CPF_2104 Clostridium perfringens ATCC 13124 RluA family pseudouridine synthase YP_696533.1 2336001 R 195103 CDS YP_696534.1 110800754 4201606 complement(2337059..2337685) 1 NC_008261.1 identified by match to protein family HMM PF05103; cell division protein DivIVA 2337685 4201606 CPF_2105 Clostridium perfringens ATCC 13124 cell division protein DivIVA YP_696534.1 2337059 R 195103 CDS YP_696535.1 110800170 4203567 complement(2337698..2338459) 1 NC_008261.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 2338459 4203567 CPF_2106 Clostridium perfringens ATCC 13124 S4 domain-containing protein YP_696535.1 2337698 R 195103 CDS YP_696536.1 110799481 4202325 complement(2338461..2338910) 1 NC_008261.1 identified by similarity to PIR:C97161; match to protein family HMM PF04472; hypothetical protein 2338910 4202325 CPF_2107 Clostridium perfringens ATCC 13124 hypothetical protein YP_696536.1 2338461 R 195103 CDS YP_696537.1 110798840 4201468 complement(2338929..2339588) 1 NC_008261.1 identified by similarity to GB:AAO36167.1; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 2339588 4201468 CPF_2108 Clostridium perfringens ATCC 13124 hypothetical protein YP_696537.1 2338929 R 195103 CDS YP_696538.1 110800822 4201092 complement(2339688..2340419) 1 NC_008261.1 identified by similarity to GB:AAO36168.1; match to protein family HMM PF05949; hypothetical protein 2340419 4201092 CPF_2109 Clostridium perfringens ATCC 13124 hypothetical protein YP_696538.1 2339688 R 195103 CDS YP_696539.1 110800176 4203670 complement(2340432..2340770) 1 NC_008261.1 identified by similarity to SP:P28265; match to protein family HMM PF06947; small basic protein 2340770 sbp 4203670 sbp Clostridium perfringens ATCC 13124 small basic protein YP_696539.1 2340432 R 195103 CDS YP_696540.1 110798832 4202491 complement(2340783..2341499) 1 NC_008261.1 identified by similarity to GB:AAO36170.1; match to protein family HMM PF05949; hypothetical protein 2341499 4202491 CPF_2111 Clostridium perfringens ATCC 13124 hypothetical protein YP_696540.1 2340783 R 195103 CDS YP_696541.1 110800515 4203370 complement(2341513..2342259) 1 NC_008261.1 cell division protein FtsQ 2342259 4203370 CPF_2112 Clostridium perfringens ATCC 13124 cell division protein FtsQ YP_696541.1 2341513 R 195103 CDS YP_696542.1 110800583 4202349 complement(2342417..2343541) 1 NC_008261.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615; stage V sporulation protein E 2343541 spoVE 4202349 spoVE Clostridium perfringens ATCC 13124 stage V sporulation protein E YP_696542.1 2342417 R 195103 CDS YP_696543.1 110799650 4202574 complement(2343569..2344540) 1 NC_008261.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2344540 mraY 4202574 mraY Clostridium perfringens ATCC 13124 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_696543.1 2343569 R 195103 CDS YP_696544.1 110801170 4201030 complement(2344590..2345951) 1 NC_008261.1 identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 2345951 murF 4201030 murF Clostridium perfringens ATCC 13124 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_696544.1 2344590 R 195103 CDS YP_696545.1 110800485 4201959 complement(2345964..2347418) 1 NC_008261.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2347418 murE 4201959 murE Clostridium perfringens ATCC 13124 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_696545.1 2345964 R 195103 CDS YP_696546.2 261876156 4202985 complement(2347513..2349732) 1 NC_008261.1 identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 2349732 spoVD 4202985 spoVD Clostridium perfringens ATCC 13124 stage V sporulation protein D YP_696546.2 2347513 R 195103 CDS YP_696547.1 110799444 4201528 complement(2349920..2350348) 1 NC_008261.1 cell division protein FtsL 2350348 4201528 CPF_2118 Clostridium perfringens ATCC 13124 cell division protein FtsL YP_696547.1 2349920 R 195103 CDS YP_696548.1 110800523 4201179 complement(2350420..2351352) 1 NC_008261.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 2351352 mraW 4201179 mraW Clostridium perfringens ATCC 13124 S-adenosyl-methyltransferase MraW YP_696548.1 2350420 R 195103 CDS YP_696549.1 110799604 4203404 complement(2351900..2352997) 1 NC_008261.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2352997 ychF 4203404 ychF Clostridium perfringens ATCC 13124 GTP-dependent nucleic acid-binding protein EngD YP_696549.1 2351900 R 195103 CDS YP_696550.1 110798774 4201890 2353156..2353953 1 NC_008261.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884; delta-lactam-biosynthetic de-N-acetylase 2353953 pdaA 4201890 pdaA Clostridium perfringens ATCC 13124 delta-lactam-biosynthetic de-N-acetylase YP_696550.1 2353156 D 195103 CDS YP_696551.1 110800953 4203342 complement(2354132..2354767) 1 NC_008261.1 identified by match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 2354767 4203342 CPF_2123 Clostridium perfringens ATCC 13124 methenyltetrahydrofolate cyclohydrolase YP_696551.1 2354132 R 195103 CDS YP_696552.1 110800716 4202463 complement(2354796..2356082) 1 NC_008261.1 hypothetical protein 2356082 4202463 CPF_2124 Clostridium perfringens ATCC 13124 hypothetical protein YP_696552.1 2354796 R 195103 CDS YP_696553.1 110801341 4203224 complement(2356082..2356798) 1 NC_008261.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase 2356798 4203224 CPF_2125 Clostridium perfringens ATCC 13124 WecB/TagA/CpsF family glycosyl transferase YP_696553.1 2356082 R 195103 CDS YP_696554.1 110799014 4202264 complement(2356814..2357911) 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2357911 4202264 CPF_2126 Clostridium perfringens ATCC 13124 hypothetical protein YP_696554.1 2356814 R 195103 CDS YP_696555.1 110800100 4202405 complement(2358203..2359930) 1 NC_008261.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2359930 4202405 CPF_2127 Clostridium perfringens ATCC 13124 phosphoglucomutase/phosphomannomutase YP_696555.1 2358203 R 195103 CDS YP_696556.1 110800820 4201090 complement(2360086..2360694) 1 NC_008261.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2360694 4201090 CPF_2128 Clostridium perfringens ATCC 13124 50S ribosomal protein L25 YP_696556.1 2360086 R 195103 CDS YP_696557.1 110798918 4200982 complement(2360831..2365270) 1 NC_008261.1 identified by match to protein family HMM PF00041; fibronectin type III 2365270 4200982 CPF_2129 Clostridium perfringens ATCC 13124 fibronectin type III YP_696557.1 2360831 R 195103 CDS YP_696558.1 110799472 4201342 complement(2365428..2368226) 1 NC_008261.1 identified by match to protein family HMM PF00754; match to protein family HMM PF03160; calx-beta domain-containing protein 2368226 4201342 CPF_2130 Clostridium perfringens ATCC 13124 calx-beta domain-containing protein YP_696558.1 2365428 R 195103 CDS YP_696559.1 110799759 4203657 complement(2368450..2369166) 1 NC_008261.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2369166 4203657 CPF_2131 Clostridium perfringens ATCC 13124 glycerophosphoryl diester phosphodiesterase YP_696559.1 2368450 R 195103 CDS YP_696560.1 110800372 4201981 complement(2369170..2370192) 1 NC_008261.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01791; FMN-dependent dehydrogenase 2370192 4201981 CPF_2132 Clostridium perfringens ATCC 13124 FMN-dependent dehydrogenase YP_696560.1 2369170 R 195103 CDS YP_696561.1 110800882 4203876 complement(2370206..2370649) 1 NC_008261.1 identified by similarity to GB:AAO36753.1; match to protein family HMM PF04463; hypothetical protein 2370649 4203876 CPF_2133 Clostridium perfringens ATCC 13124 hypothetical protein YP_696561.1 2370206 R 195103 CDS YP_696562.1 110799922 4201446 complement(2370888..2373071) 1 NC_008261.1 identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 2373071 spoVD 4201446 spoVD Clostridium perfringens ATCC 13124 stage V sporulation protein D YP_696562.1 2370888 R 195103 CDS YP_696563.1 110799497 4202050 complement(2373335..2375695) 1 NC_008261.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 2375695 4202050 CPF_2135 Clostridium perfringens ATCC 13124 recombination and DNA strand exchange inhibitor protein YP_696563.1 2373335 R 195103 CDS YP_696564.1 110799078 4201046 complement(2375709..2378060) 1 NC_008261.1 identified by match to protein family HMM PF01136; U32 family peptidase 2378060 4201046 CPF_2136 Clostridium perfringens ATCC 13124 U32 family peptidase YP_696564.1 2375709 R 195103 CDS YP_696565.1 110800838 4203930 2378459..2379247 1 NC_008261.1 identified by similarity to SP:Q02150; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 2379247 4203930 CPF_2137 Clostridium perfringens ATCC 13124 histidinol-phosphatase YP_696565.1 2378459 D 195103 CDS YP_696566.1 110800356 4202023 complement(2379538..2380893) 1 NC_008261.1 hypothetical protein 2380893 4202023 CPF_2138 Clostridium perfringens ATCC 13124 hypothetical protein YP_696566.1 2379538 R 195103 CDS YP_696567.1 110800145 4203542 complement(2380974..2383355) 1 NC_008261.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2383355 pheT 4203542 pheT Clostridium perfringens ATCC 13124 phenylalanyl-tRNA synthetase subunit beta YP_696567.1 2380974 R 195103 CDS YP_696568.1 110800757 4201609 complement(2383379..2384398) 1 NC_008261.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2384398 pheS 4201609 pheS Clostridium perfringens ATCC 13124 phenylalanyl-tRNA synthetase subunit alpha YP_696568.1 2383379 R 195103 CDS YP_696569.1 110799854 4203441 complement(2385010..2385783) 1 NC_008261.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 2385783 4203441 CPF_2141 Clostridium perfringens ATCC 13124 RNA methyltransferase YP_696569.1 2385010 R 195103 CDS YP_696570.1 110799583 4202680 complement(2385809..2386474) 1 NC_008261.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein 2386474 4202680 CPF_2142 Clostridium perfringens ATCC 13124 potassium uptake protein YP_696570.1 2385809 R 195103 CDS YP_696571.1 110800257 4201844 complement(2386497..2387837) 1 NC_008261.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein 2387837 4201844 CPF_2143 Clostridium perfringens ATCC 13124 TrkH family potassium uptake protein YP_696571.1 2386497 R 195103 CDS YP_696572.1 110800475 4201558 complement(2388066..2388425) 1 NC_008261.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2388425 rplT 4201558 rplT Clostridium perfringens ATCC 13124 50S ribosomal protein L20 YP_696572.1 2388066 R 195103 CDS YP_696573.1 110801128 4201629 complement(2388455..2388652) 1 NC_008261.1 identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 2388652 rpmI 4201629 rpmI Clostridium perfringens ATCC 13124 50S ribosomal protein L35 YP_696573.1 2388455 R 195103 CDS YP_696574.1 110799853 4203440 complement(2388674..2389195) 1 NC_008261.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2389195 infC 4203440 infC Clostridium perfringens ATCC 13124 translation initiation factor IF-3 YP_696574.1 2388674 R 195103 CDS YP_696575.1 110799220 4201225 complement(2389476..2390354) 1 NC_008261.1 identified by similarity to PIR:D97191; match to protein family HMM TIGR02834; sporulation protein YtxC 2390354 ytxC 4201225 ytxC Clostridium perfringens ATCC 13124 sporulation protein YtxC YP_696575.1 2389476 R 195103 CDS YP_696576.1 110800357 4202024 2390489..2391184 1 NC_008261.1 identified by similarity to PIR:E97191; hypothetical protein 2391184 4202024 CPF_2148 Clostridium perfringens ATCC 13124 hypothetical protein YP_696576.1 2390489 D 195103 CDS YP_696577.1 110799341 4203079 2391439..2392419 1 NC_008261.1 identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase 2392419 4203079 CPF_2149 Clostridium perfringens ATCC 13124 BadF/BadG/BcrA/BcrD ATPase YP_696577.1 2391439 D 195103 CDS YP_696578.1 110798783 4201120 complement(2392552..2393106) 1 NC_008261.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2393106 4201120 CPF_2150 Clostridium perfringens ATCC 13124 NUDIX family hydrolase YP_696578.1 2392552 R 195103 CDS YP_696579.1 110801030 4201942 complement(2393271..2393825) 1 NC_008261.1 hypothetical protein 2393825 4201942 CPF_2151 Clostridium perfringens ATCC 13124 hypothetical protein YP_696579.1 2393271 R 195103 CDS YP_696580.1 110800151 4203548 2394125..2394502 1 NC_008261.1 hypothetical protein 2394502 4203548 CPF_2152 Clostridium perfringens ATCC 13124 hypothetical protein YP_696580.1 2394125 D 195103 CDS YP_696581.1 110799722 4201206 complement(2394983..2395942) 1 NC_008261.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2395942 hslO 4201206 hslO Clostridium perfringens ATCC 13124 Hsp33-like chaperonin YP_696581.1 2394983 R 195103 CDS YP_696582.1 110801132 4201633 complement(2395958..2396695) 1 NC_008261.1 identified by similarity to GB:AAS43311.1; hypothetical protein 2396695 4201633 CPF_2158 Clostridium perfringens ATCC 13124 hypothetical protein YP_696582.1 2395958 R 195103 CDS YP_696583.1 110800488 4201963 complement(2396747..2397019) 1 NC_008261.1 small acid-soluble spore protein 2397019 4201963 CPF_2159 Clostridium perfringens ATCC 13124 small acid-soluble spore protein YP_696583.1 2396747 R 195103 CDS YP_696584.1 110799503 4202056 2397221..2398198 1 NC_008261.1 identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 2398198 asd 4202056 asd Clostridium perfringens ATCC 13124 aspartate-semialdehyde dehydrogenase YP_696584.1 2397221 D 195103 CDS YP_696585.1 110798880 4203415 2398223..2399098 1 NC_008261.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2399098 dapA 4203415 dapA Clostridium perfringens ATCC 13124 dihydrodipicolinate synthase YP_696585.1 2398223 D 195103 CDS YP_696586.1 110800271 4203611 2399171..2399935 1 NC_008261.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2399935 dapB 4203611 dapB Clostridium perfringens ATCC 13124 dihydrodipicolinate reductase YP_696586.1 2399171 D 195103 CDS YP_696587.1 110799307 4203143 complement(2400229..2401371) 1 NC_008261.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 2401371 4203143 CPF_2163 Clostridium perfringens ATCC 13124 aminotransferase, classes I and II YP_696587.1 2400229 R 195103 CDS YP_696588.1 110798672 4202311 complement(2401371..2401907) 1 NC_008261.1 identified by match to protein family HMM PF02572; cob(I)alamin adenosyltransferase 2401907 4202311 CPF_2164 Clostridium perfringens ATCC 13124 cob(I)alamin adenosyltransferase YP_696588.1 2401371 R 195103 CDS YP_696589.1 110800913 4203595 2402101..2402811 1 NC_008261.1 identified by match to protein family HMM PF00132; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2402811 4203595 CPF_2165 Clostridium perfringens ATCC 13124 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_696589.1 2402101 D 195103 CDS YP_696590.1 110800328 4202092 complement(2402861..2403517) 1 NC_008261.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2403517 4202092 CPF_2166 Clostridium perfringens ATCC 13124 single-stranded DNA-binding protein YP_696590.1 2402861 R 195103 CDS YP_696591.1 110801155 4201015 complement(2403633..2404409) 1 NC_008261.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764; polysaccharide deacetylase 2404409 4201015 CPF_2167 Clostridium perfringens ATCC 13124 polysaccharide deacetylase YP_696591.1 2403633 R 195103 CDS YP_696592.1 110800867 4203861 2404517..2405047 1 NC_008261.1 identified by similarity to PIR:A97194; hypothetical protein 2405047 4203861 CPF_2168 Clostridium perfringens ATCC 13124 hypothetical protein YP_696592.1 2404517 D 195103 CDS YP_696593.1 110800685 4202528 2405113..2406219 1 NC_008261.1 identified by match to protein family HMM PF01594; hypothetical protein 2406219 4202528 CPF_2169 Clostridium perfringens ATCC 13124 hypothetical protein YP_696593.1 2405113 D 195103 CDS YP_696594.1 110799661 4202585 2406391..2407812 1 NC_008261.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 2407812 4202585 CPF_2170 Clostridium perfringens ATCC 13124 cell envelope-related function transcriptional attenuator YP_696594.1 2406391 D 195103 CDS YP_696595.1 110799044 4201300 complement(2407867..2408508) 1 NC_008261.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 2408508 hlyIII 4201300 hlyIII Clostridium perfringens ATCC 13124 hemolysin III YP_696595.1 2407867 R 195103 CDS YP_696596.1 110801021 4201366 2408634..2409128 1 NC_008261.1 identified by similarity to GB:AAN53875.1; match to protein family HMM PF06172; hypothetical protein 2409128 4201366 CPF_2172 Clostridium perfringens ATCC 13124 hypothetical protein YP_696596.1 2408634 D 195103 CDS YP_696597.1 110799485 4202329 complement(2409240..2410799) 1 NC_008261.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein 2410799 4202329 CPF_2173 Clostridium perfringens ATCC 13124 voltage-gated chloride channel family protein YP_696597.1 2409240 R 195103 CDS YP_696598.1 110800658 4201702 complement(2410910..2412235) 1 NC_008261.1 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2412235 folC 4201702 folC Clostridium perfringens ATCC 13124 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_696598.1 2410910 R 195103 CDS YP_696599.1 110801210 4203131 complement(2412522..2415164) 1 NC_008261.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2415164 valS 4203131 valS Clostridium perfringens ATCC 13124 valyl-tRNA synthetase YP_696599.1 2412522 R 195103 CDS YP_696600.1 110799917 4203212 2415821..2416171 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2416171 4203212 CPF_2176 Clostridium perfringens ATCC 13124 hypothetical protein YP_696600.1 2415821 D 195103 CDS YP_696601.1 110800793 4202229 complement(2416377..2417552) 1 NC_008261.1 identified by match to protein family HMM PF01841; transglutaminase domain-containing protein 2417552 4202229 CPF_2177 Clostridium perfringens ATCC 13124 transglutaminase domain-containing protein YP_696601.1 2416377 R 195103 CDS YP_696602.1 110799989 4201259 complement(2417558..2418196) 1 NC_008261.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2418196 recX 4201259 recX Clostridium perfringens ATCC 13124 recombination regulator RecX YP_696602.1 2417558 R 195103 CDS YP_696603.1 110799529 4203191 complement(2418202..2419446) 1 NC_008261.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2419446 4203191 CPF_2179 Clostridium perfringens ATCC 13124 M16 family peptidase YP_696603.1 2418202 R 195103 CDS YP_696604.1 110800218 4202937 2419541..2420212 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2420212 4202937 CPF_2180 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_696604.1 2419541 D 195103 CDS YP_696605.1 110799592 4202690 2420212..2421735 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2421735 4202690 CPF_2181 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696605.1 2420212 D 195103 CDS YP_696606.1 110798823 4202482 complement(2421988..2422734) 1 NC_008261.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2422734 fabG 4202482 fabG Clostridium perfringens ATCC 13124 3-ketoacyl-ACP reductase YP_696606.1 2421988 R 195103 CDS YP_696607.1 110800866 4203860 complement(2422840..2423802) 1 NC_008261.1 identified by match to protein family HMM PF01244; dipeptidase 2423802 4203860 CPF_2183 Clostridium perfringens ATCC 13124 dipeptidase YP_696607.1 2422840 R 195103 CDS YP_696608.1 110799943 4203783 complement(2424050..2425282) 1 NC_008261.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2425282 glyA 4203783 glyA Clostridium perfringens ATCC 13124 serine hydroxymethyltransferase YP_696608.1 2424050 R 195103 CDS YP_696609.1 110799123 4203053 2425462..2426232 1 NC_008261.1 identified by similarity to PIR:B89847; match to protein family HMM PF06738; hypothetical protein 2426232 4203053 CPF_2185 Clostridium perfringens ATCC 13124 hypothetical protein YP_696609.1 2425462 D 195103 CDS YP_696610.1 110801248 4203325 2426233..2426754 1 NC_008261.1 identified by similarity to GB:AAO36791.1; hypothetical protein 2426754 4203325 CPF_2186 Clostridium perfringens ATCC 13124 hypothetical protein YP_696610.1 2426233 D 195103 CDS YP_696611.1 110799616 4201490 complement(2426772..2427044) 1 NC_008261.1 identified by similarity to PIR:F97179; match to protein family HMM PF02583; hypothetical protein 2427044 4201490 CPF_2187 Clostridium perfringens ATCC 13124 hypothetical protein YP_696611.1 2426772 R 195103 CDS YP_696612.1 110801288 4201595 complement(2427330..2429123) 1 NC_008261.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2429123 aspS 4201595 aspS Clostridium perfringens ATCC 13124 aspartyl-tRNA synthetase YP_696612.1 2427330 R 195103 CDS YP_696613.1 110798964 4201377 complement(2429144..2430391) 1 NC_008261.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2430391 hisS 4201377 hisS Clostridium perfringens ATCC 13124 histidyl-tRNA synthetase YP_696613.1 2429144 R 195103 CDS YP_696614.1 110801228 4203305 complement(2430423..2431865) 1 NC_008261.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2431865 4203305 CPF_2190 Clostridium perfringens ATCC 13124 coproporphyrinogen III oxidase YP_696614.1 2430423 R 195103 CDS YP_696615.1 110800702 4203831 complement(2431855..2432475) 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2432475 4203831 CPF_2191 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_696615.1 2431855 R 195103 CDS YP_696616.1 110799409 4201163 complement(2432635..2433084) 1 NC_008261.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2433084 dtd 4201163 dtd Clostridium perfringens ATCC 13124 D-tyrosyl-tRNA(Tyr) deacylase YP_696616.1 2432635 R 195103 CDS YP_696617.1 110798612 4202739 complement(2433099..2435279) 1 NC_008261.1 identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 2435279 relA 4202739 relA Clostridium perfringens ATCC 13124 GTP pyrophosphokinase YP_696617.1 2433099 R 195103 CDS YP_696618.1 110800268 4203608 complement(2435431..2435949) 1 NC_008261.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2435949 apt 4203608 apt Clostridium perfringens ATCC 13124 adenine phosphoribosyltransferase YP_696618.1 2435431 R 195103 CDS YP_696619.1 110800381 4201990 complement(2435993..2436847) 1 NC_008261.1 identified by match to protein family HMM PF01368; DHH domain-containing protein 2436847 4201990 CPF_2195 Clostridium perfringens ATCC 13124 DHH domain-containing protein YP_696619.1 2435993 R 195103 CDS YP_696620.1 110799216 4201221 complement(2437047..2437916) 1 NC_008261.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2437916 secF 4201221 secF Clostridium perfringens ATCC 13124 preprotein translocase subunit SecF YP_696620.1 2437047 R 195103 CDS YP_696621.1 110799636 4202501 complement(2437909..2439168) 1 NC_008261.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2439168 secD 4202501 secD Clostridium perfringens ATCC 13124 preprotein translocase subunit SecD YP_696621.1 2437909 R 195103 CDS YP_696622.1 110800078 4202442 complement(2439266..2440639) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2440639 4202442 CPF_2198 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_696622.1 2439266 R 195103 CDS YP_696623.1 110800260 4201847 complement(2440709..2440849) 1 NC_008261.1 hypothetical protein 2440849 4201847 CPF_2199 Clostridium perfringens ATCC 13124 hypothetical protein YP_696623.1 2440709 R 195103 CDS YP_696624.1 110801086 4202855 complement(2441045..2441314) 1 NC_008261.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2441314 yajC 4202855 yajC Clostridium perfringens ATCC 13124 preprotein translocase subunit YajC YP_696624.1 2441045 R 195103 CDS YP_696625.1 110799191 4202383 complement(2441353..2442495) 1 NC_008261.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2442495 tgt 4202383 tgt Clostridium perfringens ATCC 13124 queuine tRNA-ribosyltransferase YP_696625.1 2441353 R 195103 CDS YP_696626.1 110799784 4203527 complement(2442519..2443544) 1 NC_008261.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2443544 queA 4203527 queA Clostridium perfringens ATCC 13124 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_696626.1 2442519 R 195103 CDS YP_696627.1 110799933 4201457 complement(2443566..2444606) 1 NC_008261.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2444606 ruvB 4201457 ruvB Clostridium perfringens ATCC 13124 Holliday junction DNA helicase RuvB YP_696627.1 2443566 R 195103 CDS YP_696628.1 110800505 4203360 complement(2444620..2445225) 1 NC_008261.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2445225 ruvA 4203360 ruvA Clostridium perfringens ATCC 13124 Holliday junction DNA helicase RuvA YP_696628.1 2444620 R 195103 CDS YP_696629.1 110798665 4202304 complement(2445454..2446047) 1 NC_008261.1 identified by similarity to PIR:T44357; hypothetical protein 2446047 4202304 CPF_2205 Clostridium perfringens ATCC 13124 hypothetical protein YP_696629.1 2445454 R 195103 CDS YP_696630.1 110799312 4203148 complement(2446345..2449890) 1 NC_008261.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein 2449890 4203148 CPF_2206 Clostridium perfringens ATCC 13124 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein YP_696630.1 2446345 R 195103 CDS YP_696631.1 110801297 4201898 complement(2450140..2453787) 1 NC_008261.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein 2453787 4201898 CPF_2207 Clostridium perfringens ATCC 13124 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein YP_696631.1 2450140 R 195103 CDS YP_696632.1 110800103 4202408 complement(2454036..2455034) 1 NC_008261.1 identified by similarity to GB:AAP10275.1; hypothetical protein 2455034 4202408 CPF_2208 Clostridium perfringens ATCC 13124 hypothetical protein YP_696632.1 2454036 R 195103 CDS YP_696633.1 110799780 4203523 complement(2455509..2455943) 1 NC_008261.1 identified by similarity to SP:P04252; match to protein family HMM PF00042; hemoglobin 2455943 vhb 4203523 vhb Clostridium perfringens ATCC 13124 hemoglobin YP_696633.1 2455509 R 195103 CDS YP_696634.1 110798977 4201100 complement(2456370..2457107) 1 NC_008261.1 identified by similarity to SP:Q9ZNK0; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 2457107 4201100 CPF_2210 Clostridium perfringens ATCC 13124 hypothetical protein YP_696634.1 2456370 R 195103 CDS YP_696635.1 110801104 4203279 complement(2457233..2457886) 1 NC_008261.1 identified by similarity to GB:AAO36701.1; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 2457886 4203279 CPF_2211 Clostridium perfringens ATCC 13124 hypothetical protein YP_696635.1 2457233 R 195103 CDS YP_696636.1 110798608 4202735 complement(2457892..2459298) 1 NC_008261.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2459298 4202735 CPF_2212 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_696636.1 2457892 R 195103 CDS YP_696637.1 110799971 4203753 complement(2459313..2460215) 1 NC_008261.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 2460215 4203753 CPF_2213 Clostridium perfringens ATCC 13124 nucleotidyltransferase domain-containing protein YP_696637.1 2459313 R 195103 CDS YP_696638.1 110800209 4202927 complement(2460257..2460730) 1 NC_008261.1 hypothetical protein 2460730 4202927 CPF_2214 Clostridium perfringens ATCC 13124 hypothetical protein YP_696638.1 2460257 R 195103 CDS YP_696639.1 110800879 4203873 complement(2460862..2462655) 1 NC_008261.1 identified by match to protein family HMM PF01926; GTP binding protein 2462655 4203873 CPF_2215 Clostridium perfringens ATCC 13124 GTP binding protein YP_696639.1 2460862 R 195103 CDS YP_696640.1 110800715 4202462 2462762..2463286 1 NC_008261.1 identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 2463286 hpt 4202462 hpt Clostridium perfringens ATCC 13124 hypoxanthine phosphoribosyltransferase YP_696640.1 2462762 D 195103 CDS YP_696641.1 110801384 4203465 complement(2463320..2464009) 1 NC_008261.1 identified by similarity to PIR:T44346; match to protein family HMM TIGR02832; sporulation protein YunB 2464009 yunB 4203465 yunB Clostridium perfringens ATCC 13124 sporulation protein YunB YP_696641.1 2463320 R 195103 CDS YP_696642.1 110800912 4203594 2464146..2466638 1 NC_008261.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 2466638 4203594 CPF_2218 Clostridium perfringens ATCC 13124 1A family penicillin-binding protein YP_696642.1 2464146 D 195103 CDS YP_696643.1 110800278 4203618 2466932..2468332 1 NC_008261.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 2468332 4203618 CPF_2219 Clostridium perfringens ATCC 13124 sodium:alanine symporter family protein YP_696643.1 2466932 D 195103 CDS YP_696644.1 110799421 4202536 complement(2468369..2468761) 1 NC_008261.1 hypothetical protein 2468761 4202536 CPF_2220 Clostridium perfringens ATCC 13124 hypothetical protein YP_696644.1 2468369 R 195103 CDS YP_696645.1 110798857 4201135 complement(2468809..2469774) 1 NC_008261.1 identified by match to protein family HMM PF00583; acetyltransferase 2469774 4201135 CPF_2221 Clostridium perfringens ATCC 13124 acetyltransferase YP_696645.1 2468809 R 195103 CDS YP_696646.1 110801118 4203293 2470211..2470750 1 NC_008261.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 2470750 4203293 CPF_2222 Clostridium perfringens ATCC 13124 DNA-binding protein YP_696646.1 2470211 D 195103 CDS YP_696647.1 110799654 4202578 2470782..2471831 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding protein 2471831 potA 4202578 potA Clostridium perfringens ATCC 13124 spermidine/putrescine ABC transporter ATP-binding protein YP_696647.1 2470782 D 195103 CDS YP_696648.1 110800670 4201714 2471834..2472679 1 NC_008261.1 identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 2472679 potB 4201714 potB Clostridium perfringens ATCC 13124 spermidine/putrescine ABC transporter permease PotB YP_696648.1 2471834 D 195103 CDS YP_696649.1 110799954 4203794 2472673..2473473 1 NC_008261.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC 2473473 potC 4203794 potC Clostridium perfringens ATCC 13124 spermidine/putrescine ABC transporter permease PotC YP_696649.1 2472673 D 195103 CDS YP_696650.1 110799081 4201049 2473475..2474557 1 NC_008261.1 identified by similarity to SP:P23861; match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 2474557 potD 4201049 potD Clostridium perfringens ATCC 13124 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein YP_696650.1 2473475 D 195103 CDS YP_696651.1 110801363 4203247 complement(2474812..2475243) 1 NC_008261.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase 2475243 4203247 CPF_2227 Clostridium perfringens ATCC 13124 nucleoside diphosphate kinase YP_696651.1 2474812 R 195103 CDS YP_696652.1 110800681 4202524 2475428..2475697 1 NC_008261.1 identified by similarity to SP:O35031; match to protein family HMM PF00708; acylphosphatase 2475697 4202524 CPF_2228 Clostridium perfringens ATCC 13124 acylphosphatase YP_696652.1 2475428 D 195103 CDS YP_696653.1 110798677 4202316 complement(2475837..2475992) 1 NC_008261.1 hypothetical protein 2475992 4202316 CPF_2229 Clostridium perfringens ATCC 13124 hypothetical protein YP_696653.1 2475837 R 195103 CDS YP_696654.1 110798660 4202708 complement(2476160..2476726) 1 NC_008261.1 hypothetical protein 2476726 4202708 CPF_2230 Clostridium perfringens ATCC 13124 hypothetical protein YP_696654.1 2476160 R 195103 CDS YP_696655.1 110801081 4202850 2476905..2478176 1 NC_008261.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2478176 4202850 CPF_2231 Clostridium perfringens ATCC 13124 D-alanyl-D-alanine carboxypeptidase YP_696655.1 2476905 D 195103 CDS YP_696656.1 110799705 4203389 complement(2478231..2478875) 1 NC_008261.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX 2478875 4203389 CPF_2232 Clostridium perfringens ATCC 13124 pyrophosphatase PpaX YP_696656.1 2478231 R 195103 CDS YP_696657.1 110799543 4202640 2479465..2480475 1 NC_008261.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 2480475 asnA 4202640 asnA Clostridium perfringens ATCC 13124 asparagine synthetase AsnA YP_696657.1 2479465 D 195103 CDS YP_696658.1 110800427 4203807 2480601..2481419 1 NC_008261.1 identified by match to protein family HMM PF00515; hypothetical protein 2481419 4203807 CPF_2234 Clostridium perfringens ATCC 13124 hypothetical protein YP_696658.1 2480601 D 195103 CDS YP_696659.1 110800731 4201407 2481531..2481908 1 NC_008261.1 identified by match to protein family HMM PF03788; LrgA family protein 2481908 4201407 CPF_2235 Clostridium perfringens ATCC 13124 LrgA family protein YP_696659.1 2481531 D 195103 CDS YP_696660.1 110799189 4202381 2481901..2482611 1 NC_008261.1 identified by match to protein family HMM PF04172; lrgB-like family protein 2482611 4202381 CPF_2236 Clostridium perfringens ATCC 13124 lrgB-like family protein YP_696660.1 2481901 D 195103 CDS YP_696661.1 110798898 4202129 2482709..2483164 1 NC_008261.1 hypothetical protein 2483164 4202129 CPF_2237 Clostridium perfringens ATCC 13124 hypothetical protein YP_696661.1 2482709 D 195103 CDS YP_696662.1 110800113 4203879 complement(2483377..2485539) 1 NC_008261.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 2485539 4203879 CPF_2238 Clostridium perfringens ATCC 13124 DNA topoisomerase YP_696662.1 2483377 R 195103 CDS YP_696663.1 110800196 4202973 complement(2485767..2486924) 1 NC_008261.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 2486924 4202973 CPF_2239 Clostridium perfringens ATCC 13124 amidohydrolase YP_696663.1 2485767 R 195103 CDS YP_696664.1 110800729 4202476 complement(2487087..2487584) 1 NC_008261.1 identified by similarity to GB:AAF24291.1; match to protein family HMM PF03073; TspO/MBR family protein 2487584 4202476 CPF_2240 Clostridium perfringens ATCC 13124 TspO/MBR family protein YP_696664.1 2487087 R 195103 CDS YP_696665.1 110798635 4201688 complement(2487630..2489666) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2489666 4201688 CPF_2241 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696665.1 2487630 R 195103 CDS YP_696666.1 110799545 4202642 complement(2489656..2491518) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2491518 4202642 CPF_2242 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696666.1 2489656 R 195103 CDS YP_696667.1 110801298 4201899 complement(2491663..2492598) 1 NC_008261.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2492598 4201899 CPF_2243 Clostridium perfringens ATCC 13124 hypothetical protein YP_696667.1 2491663 R 195103 CDS YP_696668.1 110800302 4202886 complement(2492719..2493639) 1 NC_008261.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 2493639 4202886 CPF_2244 Clostridium perfringens ATCC 13124 alpha/beta hydrolase YP_696668.1 2492719 R 195103 CDS YP_696669.1 110799683 4201730 complement(2493762..2494358) 1 NC_008261.1 identified by similarity to PIR:H97195; hypothetical protein 2494358 4201730 CPF_2245 Clostridium perfringens ATCC 13124 hypothetical protein YP_696669.1 2493762 R 195103 CDS YP_696670.1 110798638 4201691 complement(2494644..2495759) 1 NC_008261.1 identified by match to protein family HMM PF01270; glycosyl hydrolase 2495759 4201691 CPF_2247 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_696670.1 2494644 R 195103 CDS YP_696671.1 110800916 4203598 complement(2495811..2496356) 1 NC_008261.1 identified by match to protein family HMM PF01464; Slt family transglycosylase 2496356 4203598 CPF_2248 Clostridium perfringens ATCC 13124 Slt family transglycosylase YP_696671.1 2495811 R 195103 CDS YP_696672.1 110801385 4203466 complement(2496366..2496965) 1 NC_008261.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 2496965 coaE 4203466 coaE Clostridium perfringens ATCC 13124 dephospho-CoA kinase YP_696672.1 2496366 R 195103 CDS YP_696673.1 110799426 4202541 complement(2496982..2499582) 1 NC_008261.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 2499582 polA 4202541 polA Clostridium perfringens ATCC 13124 DNA polymerase I YP_696673.1 2496982 R 195103 CDS YP_696674.1 110798998 4201858 complement(2499939..2500856) 1 NC_008261.1 catalyzes the formation of glutamate from glutamine; glutaminase 2500856 4201858 CPF_2251 Clostridium perfringens ATCC 13124 glutaminase YP_696674.1 2499939 R 195103 CDS YP_696675.1 110801061 4201735 2501095..2501610 1 NC_008261.1 hypothetical protein 2501610 4201735 CPF_2252 Clostridium perfringens ATCC 13124 hypothetical protein YP_696675.1 2501095 D 195103 CDS YP_696676.1 110799758 4203656 2501693..2502928 1 NC_008261.1 identified by similarity to SP:P24828; match to protein family HMM PF02073; aminopeptidase 2502928 4203656 CPF_2253 Clostridium perfringens ATCC 13124 aminopeptidase YP_696676.1 2501693 D 195103 CDS YP_696677.1 110799082 4201050 complement(2503141..2504190) 1 NC_008261.1 identified by similarity to GB:AAO35390.1; hypothetical protein 2504190 4201050 CPF_2254 Clostridium perfringens ATCC 13124 hypothetical protein YP_696677.1 2503141 R 195103 CDS YP_696678.1 110798572 4202718 complement(2504207..2505217) 1 NC_008261.1 identified by similarity to GB:AAO35389.1; hypothetical protein 2505217 4202718 CPF_2255 Clostridium perfringens ATCC 13124 hypothetical protein YP_696678.1 2504207 R 195103 CDS YP_696679.1 110800639 4201997 complement(2505426..2505539) 1 NC_008261.1 hypothetical protein 2505539 4201997 CPF_2256 Clostridium perfringens ATCC 13124 hypothetical protein YP_696679.1 2505426 R 195103 CDS YP_696680.1 110799428 4202543 complement(2506128..2506385) 1 NC_008261.1 hypothetical protein 2506385 4202543 CPF_2257 Clostridium perfringens ATCC 13124 hypothetical protein YP_696680.1 2506128 R 195103 CDS YP_696681.1 110798690 4202212 complement(2506548..2507237) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2507237 4202212 CPF_2258 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_696681.1 2506548 R 195103 CDS YP_696682.1 110801101 4203276 complement(2507255..2507812) 1 NC_008261.1 hypothetical protein 2507812 4203276 CPF_2259 Clostridium perfringens ATCC 13124 hypothetical protein YP_696682.1 2507255 R 195103 CDS YP_696683.1 110801124 4201625 complement(2507831..2508811) 1 NC_008261.1 identified by similarity to SP:P33022; match to protein family HMM PF01156; IUNH family nucleoside hydrolase 2508811 4201625 CPF_2260 Clostridium perfringens ATCC 13124 IUNH family nucleoside hydrolase YP_696683.1 2507831 R 195103 CDS YP_696684.1 110799560 4203495 complement(2509325..2510113) 1 NC_008261.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; NIF3 family protein 2510113 4203495 CPF_2261 Clostridium perfringens ATCC 13124 NIF3 family protein YP_696684.1 2509325 R 195103 CDS YP_696685.1 110800225 4202944 complement(2510113..2510802) 1 NC_008261.1 identified by similarity to PIR:F97060; match to protein family HMM PF04816; hypothetical protein 2510802 4202944 CPF_2262 Clostridium perfringens ATCC 13124 hypothetical protein YP_696685.1 2510113 R 195103 CDS YP_696686.1 110800836 4203928 complement(2510816..2511703) 1 NC_008261.1 hypothetical protein 2511703 4203928 CPF_2263 Clostridium perfringens ATCC 13124 hypothetical protein YP_696686.1 2510816 R 195103 CDS YP_696687.1 110798581 4202727 complement(2511938..2513038) 1 NC_008261.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 2513038 rpoD 4202727 rpoD Clostridium perfringens ATCC 13124 RNA polymerase sigma factor RpoD YP_696687.1 2511938 R 195103 CDS YP_696688.1 110799913 4203208 complement(2513065..2514852) 1 NC_008261.1 synthesizes RNA primers at the replication forks; DNA primase 2514852 dnaG 4203208 dnaG Clostridium perfringens ATCC 13124 DNA primase YP_696688.1 2513065 R 195103 CDS YP_696689.1 110799991 4201261 complement(2515021..2516049) 1 NC_008261.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2516049 4201261 CPF_2266 Clostridium perfringens ATCC 13124 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_696689.1 2515021 R 195103 CDS YP_696690.1 110800484 4201958 2516254..2517333 1 NC_008261.1 identified by similarity to SP:P46914; match to protein family HMM TIGR02906; spore coat protein 2517333 4201958 CPF_2267 Clostridium perfringens ATCC 13124 spore coat protein YP_696690.1 2516254 D 195103 CDS YP_696691.1 110798728 4202425 complement(2517385..2520015) 1 NC_008261.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 2520015 ppdK 4202425 ppdK Clostridium perfringens ATCC 13124 pyruvate phosphate dikinase YP_696691.1 2517385 R 195103 CDS YP_696692.1 110799102 4202822 complement(2520116..2520748) 1 NC_008261.1 identified by match to protein family HMM PF00571; hypothetical protein 2520748 4202822 CPF_2269 Clostridium perfringens ATCC 13124 hypothetical protein YP_696692.1 2520116 R 195103 CDS YP_696693.1 110801276 4201583 complement(2520953..2521579) 1 NC_008261.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 2521579 4201583 CPF_2270 Clostridium perfringens ATCC 13124 UBA/TS-N domain-containing protein YP_696693.1 2520953 R 195103 CDS YP_696694.1 110800456 4202376 complement(2521585..2522262) 1 NC_008261.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2522262 recO 4202376 recO Clostridium perfringens ATCC 13124 DNA repair protein RecO YP_696694.1 2521585 R 195103 CDS YP_696695.1 110798867 4201145 complement(2522338..2523228) 1 NC_008261.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2523228 era 4201145 era Clostridium perfringens ATCC 13124 GTP-binding protein Era YP_696695.1 2522338 R 195103 CDS YP_696696.1 110800920 4203602 complement(2523237..2523635) 1 NC_008261.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2523635 cdd 4203602 cdd Clostridium perfringens ATCC 13124 cytidine deaminase YP_696696.1 2523237 R 195103 CDS YP_696697.1 110799849 4203436 complement(2523679..2524377) 1 NC_008261.1 identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase/PAP2 family protein 2524377 4203436 CPF_2274 Clostridium perfringens ATCC 13124 diacylglycerol kinase/PAP2 family protein YP_696697.1 2523679 R 195103 CDS YP_696698.1 110800128 4203895 complement(2524405..2524911) 1 NC_008261.1 identified by similarity to SP:Q8RB52; match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 2524911 4203895 CPF_2275 Clostridium perfringens ATCC 13124 metalloprotease YP_696698.1 2524405 R 195103 CDS YP_696699.1 110799495 4202339 complement(2524913..2526967) 1 NC_008261.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; hydrolase 2526967 4202339 CPF_2276 Clostridium perfringens ATCC 13124 hydrolase YP_696699.1 2524913 R 195103 CDS YP_696700.1 110798838 4201466 complement(2527004..2528140) 1 NC_008261.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876; stage IV sporulation protein 2528140 4201466 CPF_2277 Clostridium perfringens ATCC 13124 stage IV sporulation protein YP_696700.1 2527004 R 195103 CDS YP_696701.1 110799352 4203090 complement(2528142..2528438) 1 NC_008261.1 identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856; sporulation protein YqfC 2528438 yqfC 4203090 yqfC Clostridium perfringens ATCC 13124 sporulation protein YqfC YP_696701.1 2528142 R 195103 CDS YP_696702.1 110800341 4202105 complement(2528659..2529108) 1 NC_008261.1 identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein 2529108 4202105 CPF_2279 Clostridium perfringens ATCC 13124 GatB/Yqey domain-containing protein YP_696702.1 2528659 R 195103 CDS YP_696703.1 110800958 4203347 complement(2529158..2529334) 1 NC_008261.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2529334 rpsU 4203347 rpsU Clostridium perfringens ATCC 13124 30S ribosomal protein S21 YP_696703.1 2529158 R 195103 CDS YP_696704.1 110800671 4201715 complement(2529454..2529798) 1 NC_008261.1 identified by match to protein family HMM PF01230; HIT family protein 2529798 4201715 CPF_2281 Clostridium perfringens ATCC 13124 HIT family protein YP_696704.1 2529454 R 195103 CDS YP_696705.1 110801313 4201914 complement(2529867..2531171) 1 NC_008261.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme 2531171 4201914 CPF_2282 Clostridium perfringens ATCC 13124 MiaB-like tRNA modifying enzyme YP_696705.1 2529867 R 195103 CDS YP_696706.1 110798700 4202222 complement(2531171..2531923) 1 NC_008261.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2531923 4202222 CPF_2283 Clostridium perfringens ATCC 13124 16S ribosomal RNA methyltransferase RsmE YP_696706.1 2531171 R 195103 CDS YP_696707.1 110799361 4203626 complement(2531946..2532887) 1 NC_008261.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2532887 prmA 4203626 prmA Clostridium perfringens ATCC 13124 50S ribosomal protein L11 methyltransferase YP_696707.1 2531946 R 195103 CDS YP_696708.1 110800187 4203681 complement(2533113..2533469) 1 NC_008261.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2533469 4203681 CPF_2285 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_696708.1 2533113 R 195103 CDS YP_696709.1 110799045 4201301 complement(2533471..2534649) 1 NC_008261.1 hypothetical protein 2534649 4201301 CPF_2286 Clostridium perfringens ATCC 13124 hypothetical protein YP_696709.1 2533471 R 195103 CDS YP_696710.1 110799002 4201862 complement(2534665..2535492) 1 NC_008261.1 hypothetical protein 2535492 4201862 CPF_2287 Clostridium perfringens ATCC 13124 hypothetical protein YP_696710.1 2534665 R 195103 CDS YP_696711.1 110800315 4202157 complement(2535479..2536171) 1 NC_008261.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2536171 4202157 CPF_2288 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_696711.1 2535479 R 195103 CDS YP_696712.1 110799611 4201485 complement(2536347..2537510) 1 NC_008261.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 2537510 dnaJ 4201485 dnaJ Clostridium perfringens ATCC 13124 molecular chaperone DnaJ YP_696712.1 2536347 R 195103 CDS YP_696713.1 110801376 4203457 complement(2537624..2539483) 1 NC_008261.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2539483 dnaK 4203457 dnaK Clostridium perfringens ATCC 13124 molecular chaperone DnaK YP_696713.1 2537624 R 195103 CDS YP_696714.1 110799800 4202666 complement(2539540..2540166) 1 NC_008261.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2540166 grpE 4202666 grpE Clostridium perfringens ATCC 13124 heat shock protein GrpE YP_696714.1 2539540 R 195103 CDS YP_696715.1 110798985 4201108 complement(2540197..2541216) 1 NC_008261.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2541216 hrcA 4201108 hrcA Clostridium perfringens ATCC 13124 heat-inducible transcription repressor YP_696715.1 2540197 R 195103 CDS YP_696716.1 110801024 4201936 complement(2541413..2542546) 1 NC_008261.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2542546 4201936 CPF_2293 Clostridium perfringens ATCC 13124 coproporphyrinogen III oxidase YP_696716.1 2541413 R 195103 CDS YP_696717.1 110800018 4203939 complement(2542816..2543085) 1 NC_008261.1 hypothetical protein 2543085 4203939 CPF_2294 Clostridium perfringens ATCC 13124 hypothetical protein YP_696717.1 2542816 R 195103 CDS YP_696718.1 110800481 4201955 complement(2543342..2545144) 1 NC_008261.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2545144 lepA 4201955 lepA Clostridium perfringens ATCC 13124 GTP-binding protein LepA YP_696718.1 2543342 R 195103 CDS YP_696719.1 110801265 4201572 complement(2545265..2545627) 1 NC_008261.1 hypothetical protein 2545627 4201572 CPF_2296 Clostridium perfringens ATCC 13124 hypothetical protein YP_696719.1 2545265 R 195103 CDS YP_696720.1 110798696 4202218 complement(2545682..2546767) 1 NC_008261.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867; stage II sporulation protein P 2546767 4202218 CPF_2297 Clostridium perfringens ATCC 13124 stage II sporulation protein P YP_696720.1 2545682 R 195103 CDS YP_696721.1 110800865 4201287 complement(2546916..2547893) 1 NC_008261.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 2547893 gpr 4201287 gpr Clostridium perfringens ATCC 13124 germination protease YP_696721.1 2546916 R 195103 CDS YP_696722.1 110798940 4202171 2548089..2548352 1 NC_008261.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2548352 rpsT 4202171 rpsT Clostridium perfringens ATCC 13124 30S ribosomal protein S20 YP_696722.1 2548089 D 195103 CDS YP_696723.1 110799726 4201210 complement(2548448..2549494) 1 NC_008261.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2549494 holA 4201210 holA Clostridium perfringens ATCC 13124 DNA polymerase III subunit delta YP_696723.1 2548448 R 195103 CDS YP_696724.1 110799672 4201719 complement(2549538..2551193) 1 NC_008261.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence family protein 2551193 4201719 CPF_2301 Clostridium perfringens ATCC 13124 competence family protein YP_696724.1 2549538 R 195103 CDS YP_696725.1 110800647 4202005 complement(2551245..2551610) 1 NC_008261.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839; stage V sporulation protein AE 2551610 spoVAE 4202005 spoVAE Clostridium perfringens ATCC 13124 stage V sporulation protein AE YP_696725.1 2551245 R 195103 CDS YP_696726.1 110801290 4201597 complement(2551666..2552685) 1 NC_008261.1 identified by similarity to SP:P40869; match to protein family HMM PF07451; match to protein family HMM TIGR02845; stage V sporulation protein AD 2552685 spoVAD 4201597 spoVAD Clostridium perfringens ATCC 13124 stage V sporulation protein AD YP_696726.1 2551666 R 195103 CDS YP_696727.1 110800064 4203771 complement(2552691..2553158) 1 NC_008261.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838; stage V sporulation protein AC 2553158 spoVAC 4203771 spoVAC Clostridium perfringens ATCC 13124 stage V sporulation protein AC YP_696727.1 2552691 R 195103 CDS YP_696728.1 110799417 4201171 complement(2553296..2554051) 1 NC_008261.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 2554051 sigF 4201171 sigF Clostridium perfringens ATCC 13124 sporulation sigma factor SigF YP_696728.1 2553296 R 195103 CDS YP_696729.1 110801409 4203005 complement(2554069..2554491) 1 NC_008261.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 2554491 spoIIAB 4203005 spoIIAB Clostridium perfringens ATCC 13124 anti-sigma F factor YP_696729.1 2554069 R 195103 CDS YP_696730.1 110801393 4203474 complement(2554505..2554840) 1 NC_008261.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886; anti-sigma F factor antagonist 2554840 spoIIAA 4203474 spoIIAA Clostridium perfringens ATCC 13124 anti-sigma F factor antagonist YP_696730.1 2554505 R 195103 CDS YP_696731.1 110800581 4202347 complement(2554974..2557259) 1 NC_008261.1 identified by match to protein family HMM PF05362; ATP-dependent protease 2557259 4202347 CPF_2308 Clostridium perfringens ATCC 13124 ATP-dependent protease YP_696731.1 2554974 R 195103 CDS YP_696732.1 110799378 4203643 complement(2557460..2558134) 1 NC_008261.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 2558134 deoC 4203643 deoC Clostridium perfringens ATCC 13124 deoxyribose-phosphate aldolase YP_696732.1 2557460 R 195103 CDS YP_696733.1 110798621 4202748 2558391..2558798 1 NC_008261.1 identified by similarity to GB:AAO36186.1; hypothetical protein 2558798 4202748 CPF_2310 Clostridium perfringens ATCC 13124 hypothetical protein YP_696733.1 2558391 D 195103 CDS YP_696734.1 110801168 4201028 complement(2559002..2561551) 1 NC_008261.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P 2561551 4201028 CPF_2311 Clostridium perfringens ATCC 13124 ATPase P YP_696734.1 2559002 R 195103 CDS YP_696735.1 110800695 4203824 2561796..2563445 1 NC_008261.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2563445 4203824 CPF_2312 Clostridium perfringens ATCC 13124 manganese-dependent inorganic pyrophosphatase YP_696735.1 2561796 D 195103 CDS YP_696736.1 110799391 4203266 complement(2563488..2564129) 1 NC_008261.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 2564129 4203266 CPF_2313 Clostridium perfringens ATCC 13124 HAD family hydrolase YP_696736.1 2563488 R 195103 CDS YP_696737.1 110800134 4203531 complement(2564213..2564587) 1 NC_008261.1 identified by similarity to PIR:F97174; hypothetical protein 2564587 4203531 CPF_2314 Clostridium perfringens ATCC 13124 hypothetical protein YP_696737.1 2564213 R 195103 CDS YP_696738.1 110799192 4202384 complement(2564797..2566191) 1 NC_008261.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; glutamate decarboxylase 2566191 4202384 CPF_2315 Clostridium perfringens ATCC 13124 glutamate decarboxylase YP_696738.1 2564797 R 195103 CDS YP_696739.1 110799846 4203433 complement(2566777..2567832) 1 NC_008261.1 hypothetical protein 2567832 4203433 CPF_2316 Clostridium perfringens ATCC 13124 hypothetical protein YP_696739.1 2566777 R 195103 CDS YP_696740.1 110798982 4201105 complement(2567952..2569370) 1 NC_008261.1 identified by match to protein family HMM PF00324; glutamate:gamma aminobutyrate antiporter family protein 2569370 4201105 CPF_2317 Clostridium perfringens ATCC 13124 glutamate:gamma aminobutyrate antiporter family protein YP_696740.1 2567952 R 195103 CDS YP_696741.1 110801224 4203301 complement(2570072..2573587) 1 NC_008261.1 identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780; match to protein family HMM TIGR02176; pyruvate-flavodoxin oxidoreductase 2573587 nifJ 4203301 nifJ Clostridium perfringens ATCC 13124 pyruvate-flavodoxin oxidoreductase YP_696741.1 2570072 R 195103 CDS YP_696742.1 110800444 4202364 complement(2573692..2574117) 1 NC_008261.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 2574117 4202364 CPF_2319 Clostridium perfringens ATCC 13124 flavodoxin YP_696742.1 2573692 R 195103 CDS YP_696743.2 261876152 4203621 complement(2574324..2575397) 1 NC_008261.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 2575397 murG 4203621 murG Clostridium perfringens ATCC 13124 UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase YP_696743.2 2574324 R 195103 CDS YP_696744.1 110799463 4201333 2575582..2575761 1 NC_008261.1 identified by similarity to PIR:JN0082; match to protein family HMM PF00269; small, acid-soluble spore protein 2575761 sspC1 4201333 sspC1 Clostridium perfringens ATCC 13124 small, acid-soluble spore protein YP_696744.1 2575582 D 195103 CDS YP_696745.1 110799179 4202919 complement(2575882..2577660) 1 NC_008261.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 2577660 recJ 4202919 recJ Clostridium perfringens ATCC 13124 single-stranded-DNA-specific exonuclease RecJ YP_696745.1 2575882 R 195103 CDS YP_696746.1 110800326 4202090 complement(2577672..2578883) 1 NC_008261.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2578883 4202090 CPF_2323 Clostridium perfringens ATCC 13124 M16 family peptidase YP_696746.1 2577672 R 195103 CDS YP_696747.1 110799272 4203067 complement(2579096..2579671) 1 NC_008261.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 2579671 4203067 CPF_2324 Clostridium perfringens ATCC 13124 DJ-1 family protein YP_696747.1 2579096 R 195103 CDS YP_696748.1 110799869 4202991 complement(2579683..2582622) 1 NC_008261.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2582622 gyrA 4202991 gyrA Clostridium perfringens ATCC 13124 DNA topoisomerase IV subunit A YP_696748.1 2579683 R 195103 CDS YP_696749.1 110800719 4202466 complement(2582636..2584582) 1 NC_008261.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2584582 4202466 CPF_2326 Clostridium perfringens ATCC 13124 DNA topoisomerase IV subunit B YP_696749.1 2582636 R 195103 CDS YP_696750.1 110799836 4203734 complement(2584572..2585642) 1 NC_008261.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2585642 4203734 CPF_2327 Clostridium perfringens ATCC 13124 tRNA 2-selenouridine synthase YP_696750.1 2584572 R 195103 CDS YP_696751.1 110800884 4203878 complement(2585888..2587288) 1 NC_008261.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2587288 4203878 CPF_2328 Clostridium perfringens ATCC 13124 glycosyl transferase family protein YP_696751.1 2585888 R 195103 CDS YP_696752.1 110800086 4202450 2588139..2589377 1 NC_008261.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629; UV damage endonuclease 2589377 uvsE 4202450 uvsE Clostridium perfringens ATCC 13124 UV damage endonuclease YP_696752.1 2588139 D 195103 CDS YP_696753.1 110800305 4202147 2589462..2590070 1 NC_008261.1 identified by match to protein family HMM TIGR02840; sporulation protein YtaF 2590070 ytaF 4202147 ytaF Clostridium perfringens ATCC 13124 sporulation protein YtaF YP_696753.1 2589462 D 195103 CDS YP_696754.1 110799446 4201530 complement(2590240..2591409) 1 NC_008261.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2591409 4201530 CPF_2331 Clostridium perfringens ATCC 13124 trans-2-enoyl-CoA reductase YP_696754.1 2590240 R 195103 CDS YP_696755.1 110800013 4203855 complement(2591647..2593137) 1 NC_008261.1 identified by match to protein family HMM PF00324; amino acid permease 2593137 4203855 CPF_2332 Clostridium perfringens ATCC 13124 amino acid permease YP_696755.1 2591647 R 195103 CDS YP_696756.1 110799390 4203265 complement(2593484..2595724) 1 NC_008261.1 identified by similarity to SP:Q9F234; match to protein family HMM PF01055; alpha-glucosidase 2595724 4203265 CPF_2333 Clostridium perfringens ATCC 13124 alpha-glucosidase YP_696756.1 2593484 R 195103 CDS YP_696757.1 110798611 4202738 complement(2595773..2596666) 1 NC_008261.1 identified by match to protein family HMM PF00480; ROK family protein 2596666 4202738 CPF_2334 Clostridium perfringens ATCC 13124 ROK family protein YP_696757.1 2595773 R 195103 CDS YP_696758.1 110799804 4202670 complement(2596807..2598255) 1 NC_008261.1 identified by similarity to SP:P37966; match to protein family HMM PF01547; ABC transporter substrate-binding protein 2598255 4202670 CPF_2335 Clostridium perfringens ATCC 13124 ABC transporter substrate-binding protein YP_696758.1 2596807 R 195103 CDS YP_696759.1 110801087 4202856 2598640..2599134 1 NC_008261.1 hypothetical protein 2599134 4202856 CPF_2336 Clostridium perfringens ATCC 13124 hypothetical protein YP_696759.1 2598640 D 195103 CDS YP_696760.1 110800478 4201561 complement(2599202..2602336) 1 NC_008261.1 identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748; alpha-mannosidase 2602336 4201561 CPF_2337 Clostridium perfringens ATCC 13124 alpha-mannosidase YP_696760.1 2599202 R 195103 CDS YP_696761.1 110801346 4203229 complement(2602643..2603599) 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 2603599 4203229 CPF_2338 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696761.1 2602643 R 195103 CDS YP_696762.1 110799077 4201045 complement(2603617..2604585) 1 NC_008261.1 identified by match to protein family HMM PF00528; ABC transporter permease 2604585 4201045 CPF_2339 Clostridium perfringens ATCC 13124 ABC transporter permease YP_696762.1 2603617 R 195103 CDS YP_696763.1 110800081 4202445 complement(2604813..2605289) 1 NC_008261.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2605289 moaC 4202445 moaC Clostridium perfringens ATCC 13124 molybdenum cofactor biosynthesis protein MoaC YP_696763.1 2604813 R 195103 CDS YP_696764.1 110800713 4202460 complement(2605328..2605984) 1 NC_008261.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 2605984 modB 4202460 modB Clostridium perfringens ATCC 13124 molybdate ABC transporter permease YP_696764.1 2605328 R 195103 CDS YP_696765.1 110798786 4201123 complement(2605988..2606758) 1 NC_008261.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter molybdate-binding protein 2606758 modA 4201123 modA Clostridium perfringens ATCC 13124 molybdate ABC transporter molybdate-binding protein YP_696765.1 2605988 R 195103 CDS YP_696766.1 110799400 4201154 complement(2606743..2607234) 1 NC_008261.1 identified by similarity to PDB:1O8N_A; match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor synthesis protein 2607234 4201154 CPF_2343 Clostridium perfringens ATCC 13124 molybdenum cofactor synthesis protein YP_696766.1 2606743 R 195103 CDS YP_696767.1 110800482 4201956 complement(2607576..2609099) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 2609099 4201956 CPF_2344 Clostridium perfringens ATCC 13124 AraC family transcriptional regulator YP_696767.1 2607576 R 195103 CDS YP_696768.1 110801165 4201025 complement(2609104..2610840) 1 NC_008261.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 2610840 4201025 CPF_2345 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696768.1 2609104 R 195103 CDS YP_696769.1 110799200 4202392 2611062..2611739 1 NC_008261.1 hypothetical protein 2611739 4202392 CPF_2346 Clostridium perfringens ATCC 13124 hypothetical protein YP_696769.1 2611062 D 195103 CDS YP_696770.1 110799816 4203694 2612006..2613343 1 NC_008261.1 identified by match to protein family HMM PF02388; FemAB family protein 2613343 4203694 CPF_2347 Clostridium perfringens ATCC 13124 FemAB family protein YP_696770.1 2612006 D 195103 CDS YP_696771.1 110799024 4202274 2613709..2614014 1 NC_008261.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2614014 4202274 CPF_2348 Clostridium perfringens ATCC 13124 PadR family transcriptional regulator YP_696771.1 2613709 D 195103 CDS YP_696772.1 110799645 4202511 complement(2614061..2614798) 1 NC_008261.1 identified by similarity to SP:P54954; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 2614798 4202511 CPF_2349 Clostridium perfringens ATCC 13124 amino acid ABC transporter ATP-binding protein YP_696772.1 2614061 R 195103 CDS YP_696773.1 110798792 4201129 complement(2614817..2616325) 1 NC_008261.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter amino acid-binding protein/permease 2616325 4201129 CPF_2350 Clostridium perfringens ATCC 13124 His/Glu/Gln/Arg/opine amino acid ABC transporter amino acid-binding protein/permease YP_696773.1 2614817 R 195103 CDS YP_696774.1 110799314 4203150 2616498..2617277 1 NC_008261.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2617277 4203150 CPF_2351 Clostridium perfringens ATCC 13124 (Fe-S)-binding protein YP_696774.1 2616498 D 195103 CDS YP_696775.1 110800727 4202474 complement(2617410..2617826) 1 NC_008261.1 identified by similarity to PIR:A75034; match to protein family HMM PF01934; hypothetical protein 2617826 4202474 CPF_2352 Clostridium perfringens ATCC 13124 hypothetical protein YP_696775.1 2617410 R 195103 CDS YP_696776.1 110801368 4203252 complement(2618333..2619154) 1 NC_008261.1 hypothetical protein 2619154 4203252 CPF_2353 Clostridium perfringens ATCC 13124 hypothetical protein YP_696776.1 2618333 R 195103 CDS YP_696777.1 110799868 4202990 complement(2619173..2620429) 1 NC_008261.1 hypothetical protein 2620429 4202990 CPF_2354 Clostridium perfringens ATCC 13124 hypothetical protein YP_696777.1 2619173 R 195103 CDS YP_696778.1 110800506 4203361 complement(2620546..2621994) 1 NC_008261.1 identified by similarity to GB:BAA78774.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2621994 virJ 4203361 virJ Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696778.1 2620546 R 195103 CDS YP_696779.1 110800300 4202884 complement(2621984..2622682) 1 NC_008261.1 identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2622682 virI 4202884 virI Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_696779.1 2621984 R 195103 CDS YP_696780.1 110800930 4202113 complement(2622885..2623280) 1 NC_008261.1 hypothetical protein 2623280 4202113 CPF_2357 Clostridium perfringens ATCC 13124 hypothetical protein YP_696780.1 2622885 R 195103 CDS YP_696781.1 110798815 4201791 complement(2623413..2623703) 1 NC_008261.1 identified by similarity to PIR:A96991; match to protein family HMM PF04456; hypothetical protein 2623703 4201791 CPF_2358 Clostridium perfringens ATCC 13124 hypothetical protein YP_696781.1 2623413 R 195103 CDS YP_696782.1 110799948 4203788 complement(2623715..2625472) 1 NC_008261.1 identified by match to protein family HMM PF00271; helicase 2625472 4203788 CPF_2359 Clostridium perfringens ATCC 13124 helicase YP_696782.1 2623715 R 195103 CDS YP_696783.1 110799125 4203055 2625734..2626594 1 NC_008261.1 identified by match to protein family HMM PF05175; match to protein family HMM PF06325; 50S ribosomal protein L11 methyltransferase 2626594 4203055 CPF_2360 Clostridium perfringens ATCC 13124 50S ribosomal protein L11 methyltransferase YP_696783.1 2625734 D 195103 CDS YP_696784.1 110800139 4203536 complement(2627002..2627517) 1 NC_008261.1 identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456; hypothetical protein 2627517 4203536 CPF_2361 Clostridium perfringens ATCC 13124 hypothetical protein YP_696784.1 2627002 R 195103 CDS YP_696785.1 110799309 4203145 complement(2627535..2627909) 1 NC_008261.1 identified by similarity to GB:AAM25615.1; match to protein family HMM PF07009; hypothetical protein 2627909 4203145 CPF_2362 Clostridium perfringens ATCC 13124 hypothetical protein YP_696785.1 2627535 R 195103 CDS YP_696786.1 110799064 4202567 complement(2627910..2628941) 1 NC_008261.1 identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamin biosynthesis lipoprotein ApbE 2628941 4202567 CPF_2363 Clostridium perfringens ATCC 13124 thiamin biosynthesis lipoprotein ApbE YP_696786.1 2627910 R 195103 CDS YP_696787.1 110799698 4203382 complement(2629113..2632358) 1 NC_008261.1 identified by similarity to GB:AAO36386.1; match to protein family HMM PF07550; hypothetical protein 2632358 4203382 CPF_2364 Clostridium perfringens ATCC 13124 hypothetical protein YP_696787.1 2629113 R 195103 CDS YP_696788.1 110800344 4202011 complement(2632371..2633417) 1 NC_008261.1 hypothetical protein 2633417 4202011 CPF_2365 Clostridium perfringens ATCC 13124 hypothetical protein YP_696788.1 2632371 R 195103 CDS YP_696789.1 110800981 4202300 complement(2633617..2634066) 1 NC_008261.1 identified by similarity to GB:AAO81374.1; hypothetical protein 2634066 4202300 CPF_2366 Clostridium perfringens ATCC 13124 hypothetical protein YP_696789.1 2633617 R 195103 CDS YP_696790.1 110799914 4203209 2634354..2635775 1 NC_008261.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2635775 4203209 CPF_2367 Clostridium perfringens ATCC 13124 major facilitator family transporter YP_696790.1 2634354 D 195103 CDS YP_696791.1 110799254 4202078 complement(2635900..2637654) 1 NC_008261.1 identified by match to protein family HMM PF00082; subtilase 2637654 4202078 CPF_2368 Clostridium perfringens ATCC 13124 subtilase YP_696791.1 2635900 R 195103 CDS YP_696792.2 261876164 4201054 complement(2637656..2639266) 1 NC_008261.1 identified by match to protein family HMM PF00082; subtilase 2639266 4201054 CPF_2369 Clostridium perfringens ATCC 13124 subtilase YP_696792.2 2637656 R 195103 CDS YP_696793.1 110801335 4203218 complement(2639725..2641080) 1 NC_008261.1 identified by match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 2641080 rumA 4203218 rumA Clostridium perfringens ATCC 13124 23S rRNA (uracil-5-)-methyltransferase RumA YP_696793.1 2639725 R 195103 CDS YP_696794.1 110800210 4202929 complement(2641108..2641557) 1 NC_008261.1 hypothetical protein 2641557 4202929 CPF_2371 Clostridium perfringens ATCC 13124 hypothetical protein YP_696794.1 2641108 R 195103 CDS YP_696795.1 110799707 4203391 complement(2641744..2643651) 1 NC_008261.1 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 2643651 selB 4203391 selB Clostridium perfringens ATCC 13124 selenocysteine-specific translation elongation factor YP_696795.1 2641744 R 195103 CDS YP_696796.1 110799995 4201265 complement(2643652..2645040) 1 NC_008261.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2645040 selA 4201265 selA Clostridium perfringens ATCC 13124 selenocysteine synthase YP_696796.1 2643652 R 195103 CDS YP_696797.1 110799564 4203499 complement(2645057..2646088) 1 NC_008261.1 Selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 2646088 selD 4203499 selD Clostridium perfringens ATCC 13124 selenide, water dikinase YP_696797.1 2645057 R 195103 CDS YP_696798.1 110799278 4203074 complement(2646133..2646897) 1 NC_008261.1 identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426; comE operon protein 1 2646897 4203074 CPF_2375 Clostridium perfringens ATCC 13124 comE operon protein 1 YP_696798.1 2646133 R 195103 CDS YP_696799.1 110800833 4203925 2647093..2648427 1 NC_008261.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 2648427 dacF 4203925 dacF Clostridium perfringens ATCC 13124 D-alanyl-D-alanine carboxypeptidase YP_696799.1 2647093 D 195103 CDS YP_696800.1 110800540 4202892 complement(2648459..2649355) 1 NC_008261.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 2649355 4202892 CPF_2377 Clostridium perfringens ATCC 13124 RluA family pseudouridine synthase YP_696800.1 2648459 R 195103 CDS YP_696801.1 110801436 4203032 complement(2649352..2650665) 1 NC_008261.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 2650665 4203032 CPF_2378 Clostridium perfringens ATCC 13124 cell envelope-related function transcriptional attenuator YP_696801.1 2649352 R 195103 CDS YP_696802.1 110800152 4203549 complement(2650688..2651257) 1 NC_008261.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; HD domain-containing protein 2651257 4203549 CPF_2379 Clostridium perfringens ATCC 13124 HD domain-containing protein YP_696802.1 2650688 R 195103 CDS YP_696803.1 110800766 4201618 complement(2651260..2651868) 1 NC_008261.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 2651868 nadD 4201618 nadD Clostridium perfringens ATCC 13124 nicotinic acid mononucleotide adenylyltransferase YP_696803.1 2651260 R 195103 CDS YP_696804.1 110798873 4201151 complement(2651870..2652172) 1 NC_008261.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; RNA-binding protein 2652172 4201151 CPF_2381 Clostridium perfringens ATCC 13124 RNA-binding protein YP_696804.1 2651870 R 195103 CDS YP_696805.1 110799414 4201168 complement(2652190..2653476) 1 NC_008261.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2653476 obgE 4201168 obgE Clostridium perfringens ATCC 13124 GTPase ObgE YP_696805.1 2652190 R 195103 CDS YP_696806.1 110800631 4202261 complement(2653643..2653945) 1 NC_008261.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2653945 rpmA 4202261 rpmA Clostridium perfringens ATCC 13124 50S ribosomal protein L27 YP_696806.1 2653643 R 195103 CDS YP_696807.1 110801100 4203275 complement(2653949..2654320) 1 NC_008261.1 identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327; hypothetical protein 2654320 4203275 CPF_2384 Clostridium perfringens ATCC 13124 hypothetical protein YP_696807.1 2653949 R 195103 CDS YP_696808.1 110799234 4201803 complement(2654330..2654641) 1 NC_008261.1 identified by similarity to SP:P26908; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 2654641 rplU 4201803 rplU Clostridium perfringens ATCC 13124 50S ribosomal protein L21 YP_696808.1 2654330 R 195103 CDS YP_696809.1 110798631 4201684 complement(2654767..2656209) 1 NC_008261.1 identified by similarity to SP:P25537; match to protein family HMM TIGR00757; ribonuclease 2656209 4201684 CPF_2386 Clostridium perfringens ATCC 13124 ribonuclease YP_696809.1 2654767 R 195103 CDS YP_696810.1 110799476 4201346 complement(2656226..2656933) 1 NC_008261.1 identified by similarity to GB:AAO36563.1; hypothetical protein 2656933 4201346 CPF_2387 Clostridium perfringens ATCC 13124 hypothetical protein YP_696810.1 2656226 R 195103 CDS YP_696811.1 110798831 4202490 complement(2656911..2658764) 1 NC_008261.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2658764 4202490 CPF_2388 Clostridium perfringens ATCC 13124 radical SAM domain-containing protein YP_696811.1 2656911 R 195103 CDS YP_696812.1 110799620 4201494 complement(2658896..2659750) 1 NC_008261.1 identified by match to protein family HMM PF02163; M50 family peptidase 2659750 4201494 CPF_2389 Clostridium perfringens ATCC 13124 M50 family peptidase YP_696812.1 2658896 R 195103 CDS YP_696813.1 110800533 4201189 complement(2659747..2660589) 1 NC_008261.1 M23 peptidase domain-containing protein 2660589 4201189 CPF_2390 Clostridium perfringens ATCC 13124 M23 peptidase domain-containing protein YP_696813.1 2659747 R 195103 CDS YP_696814.1 110801205 4203126 complement(2660742..2661866) 1 NC_008261.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell cycle protein FtsW 2661866 4203126 CPF_2391 Clostridium perfringens ATCC 13124 cell cycle protein FtsW YP_696814.1 2660742 R 195103 CDS YP_696815.1 110799105 4202825 complement(2662014..2662286) 1 NC_008261.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2662286 minE 4202825 minE Clostridium perfringens ATCC 13124 cell division topological specificity factor MinE YP_696815.1 2662014 R 195103 CDS YP_696816.1 110798628 4201681 complement(2662297..2663094) 1 NC_008261.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 2663094 minD 4201681 minD Clostridium perfringens ATCC 13124 septum site-determining protein MinD YP_696816.1 2662297 R 195103 CDS YP_696817.1 110799648 4202514 complement(2663123..2663758) 1 NC_008261.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2663758 minC 4202514 minC Clostridium perfringens ATCC 13124 septum formation inhibitor YP_696817.1 2663123 R 195103 CDS YP_696818.1 110800318 4202160 complement(2664005..2667076) 1 NC_008261.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2667076 4202160 CPF_2395 Clostridium perfringens ATCC 13124 penicillin-binding protein YP_696818.1 2664005 R 195103 CDS YP_696819.1 110800433 4203813 complement(2667085..2667582) 1 NC_008261.1 identified by match to protein family HMM PF04093; rod shape-determining protein MreD 2667582 mreD 4203813 mreD Clostridium perfringens ATCC 13124 rod shape-determining protein MreD YP_696819.1 2667085 R 195103 CDS YP_696820.1 110801264 4201571 complement(2667598..2668449) 1 NC_008261.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2668449 mreC 4201571 mreC Clostridium perfringens ATCC 13124 rod shape-determining protein MreC YP_696820.1 2667598 R 195103 CDS YP_696821.1 110799387 4203262 complement(2668453..2669481) 1 NC_008261.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2669481 mreB 4203262 mreB Clostridium perfringens ATCC 13124 rod shape-determining protein MreB YP_696821.1 2668453 R 195103 CDS YP_696822.1 110800059 4203766 complement(2669501..2670184) 1 NC_008261.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2670184 radC 4203766 radC Clostridium perfringens ATCC 13124 DNA repair protein RadC YP_696822.1 2669501 R 195103 CDS YP_696823.1 110800698 4203827 complement(2670231..2670809) 1 NC_008261.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2670809 maf 4203827 maf Clostridium perfringens ATCC 13124 Maf-like protein YP_696823.1 2670231 R 195103 CDS YP_696824.1 110800329 4202093 complement(2671035..2671838) 1 NC_008261.1 identified by similarity to GB:AAO36576.1; match to protein family HMM PF05036; hypothetical protein 2671838 4202093 CPF_2401 Clostridium perfringens ATCC 13124 hypothetical protein YP_696824.1 2671035 R 195103 CDS YP_696825.1 110799738 4203169 complement(2672100..2672918) 1 NC_008261.1 identified by similarity to GB:AAM71574.1; match to protein family HMM PF02811; hypothetical protein 2672918 4203169 CPF_2402 Clostridium perfringens ATCC 13124 hypothetical protein YP_696825.1 2672100 R 195103 CDS YP_696826.1 110801407 4203488 complement(2673232..2674683) 1 NC_008261.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 2674683 pepD 4203488 pepD Clostridium perfringens ATCC 13124 aminoacyl-histidine dipeptidase YP_696826.1 2673232 R 195103 CDS YP_696827.1 110800773 4201759 2674816..2676240 1 NC_008261.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 2676240 pyk 4201759 pyk Clostridium perfringens ATCC 13124 pyruvate kinase YP_696827.1 2674816 D 195103 CDS YP_696828.1 110799693 4203377 complement(2676482..2677618) 1 NC_008261.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2677618 rpsA 4203377 rpsA Clostridium perfringens ATCC 13124 30S ribosomal protein S1 YP_696828.1 2676482 R 195103 CDS YP_696829.1 110799638 4202503 complement(2677764..2677967) 1 NC_008261.1 identified by match to protein family HMM PF00403; heavy metal binding protein 2677967 4202503 CPF_2406 Clostridium perfringens ATCC 13124 heavy metal binding protein YP_696829.1 2677764 R 195103 CDS YP_696830.1 110801403 4203484 complement(2678072..2678836) 1 NC_008261.1 identified by match to protein family HMM PF03883; hypothetical protein 2678836 4203484 CPF_2407 Clostridium perfringens ATCC 13124 hypothetical protein YP_696830.1 2678072 R 195103 CDS YP_696831.1 110800589 4202355 complement(2679002..2679412) 1 NC_008261.1 identified by match to protein family HMM PF00571; hypothetical protein 2679412 4202355 CPF_2408 Clostridium perfringens ATCC 13124 hypothetical protein YP_696831.1 2679002 R 195103 CDS YP_696832.1 110799345 4203083 complement(2679498..2680400) 1 NC_008261.1 identified by match to protein family HMM PF00929; exonuclease 2680400 4203083 CPF_2409 Clostridium perfringens ATCC 13124 exonuclease YP_696832.1 2679498 R 195103 CDS YP_696833.1 110798837 4201465 complement(2680655..2682409) 1 NC_008261.1 identified by similarity to GB:BAD77579.1; match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein 2682409 4201465 CPF_2410 Clostridium perfringens ATCC 13124 hypothetical protein YP_696833.1 2680655 R 195103 CDS YP_696834.1 110800599 4203573 complement(2682582..2684369) 1 NC_008261.1 identified by match to protein family HMM PF00488; MutS domain-containing protein 2684369 4203573 CPF_2411 Clostridium perfringens ATCC 13124 MutS domain-containing protein YP_696834.1 2682582 R 195103 CDS YP_696835.1 110800153 4203550 complement(2684693..2686222) 1 NC_008261.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002; PTS system, glucose-specific IIBC component 2686222 ptsG 4203550 ptsG Clostridium perfringens ATCC 13124 PTS system, glucose-specific IIBC component YP_696835.1 2684693 R 195103 CDS YP_696836.1 110801184 4203105 complement(2686393..2687289) 1 NC_008261.1 identified by similarity to SP:Q8CWN2; match to protein family HMM PF01297; ABC transporter substrate-binding protein 2687289 4203105 CPF_2413 Clostridium perfringens ATCC 13124 ABC transporter substrate-binding protein YP_696836.1 2686393 R 195103 CDS YP_696837.1 110800525 4201181 complement(2687401..2687508) 1 NC_008261.1 hypothetical protein 2687508 4201181 CPF_2414 Clostridium perfringens ATCC 13124 hypothetical protein YP_696837.1 2687401 R 195103 CDS YP_696838.1 110801164 4201024 complement(2687515..2690283) 1 NC_008261.1 identified by similarity to SP:P62134; hypothetical protein 2690283 4201024 CPF_2415 Clostridium perfringens ATCC 13124 hypothetical protein YP_696838.1 2687515 R 195103 CDS YP_696839.1 110800542 4202894 complement(2690273..2691412) 1 NC_008261.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 2691412 4202894 CPF_2416 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_696839.1 2690273 R 195103 CDS YP_696840.1 110799507 4202060 complement(2691692..2691874) 1 NC_008261.1 identified by similarity to SP:P41371; match to protein family HMM PF00269; small, acid-soluble spore protein 1 2691874 4202060 CPF_2417 Clostridium perfringens ATCC 13124 small, acid-soluble spore protein 1 YP_696840.1 2691692 R 195103 CDS YP_696841.1 110798828 4202487 complement(2692014..2694188) 1 NC_008261.1 identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167; Ser/Thr protein phosphatase 2694188 4202487 CPF_2418 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_696841.1 2692014 R 195103 CDS YP_696842.1 110800434 4203814 complement(2694788..2695408) 1 NC_008261.1 identified by match to protein family HMM PF00571; hypothetical protein 2695408 4203814 CPF_2421 Clostridium perfringens ATCC 13124 hypothetical protein YP_696842.1 2694788 R 195103 CDS YP_696843.1 110800697 4203826 2695708..2696172 1 NC_008261.1 identified by similarity to PIR:C97249; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 2696172 4203826 CPF_2422 Clostridium perfringens ATCC 13124 hypothetical protein YP_696843.1 2695708 D 195103 CDS YP_696844.1 110801308 4201909 2696166..2696870 1 NC_008261.1 identified by match to protein family HMM PF00814; glycoprotease 2696870 4201909 CPF_2423 Clostridium perfringens ATCC 13124 glycoprotease YP_696844.1 2696166 D 195103 CDS YP_696845.1 110798748 4200948 2696870..2697316 1 NC_008261.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2697316 rimI 4200948 rimI Clostridium perfringens ATCC 13124 ribosomal-protein-alanine acetyltransferase YP_696845.1 2696870 D 195103 CDS YP_696846.1 110799575 4202672 complement(2697410..2698006) 1 NC_008261.1 hypothetical protein 2698006 4202672 CPF_2425 Clostridium perfringens ATCC 13124 hypothetical protein YP_696846.1 2697410 R 195103 CDS YP_696847.1 110800077 4202441 complement(2698353..2700515) 1 NC_008261.1 identified by match to protein family HMM PF00575; RNA-binding protein 2700515 4202441 CPF_2426 Clostridium perfringens ATCC 13124 RNA-binding protein YP_696847.1 2698353 R 195103 CDS YP_696848.1 110800896 4202801 2700627..2701970 1 NC_008261.1 identified by match to protein family HMM PF04389; peptidase 2701970 4202801 CPF_2427 Clostridium perfringens ATCC 13124 peptidase YP_696848.1 2700627 D 195103 CDS YP_696849.1 110801299 4201900 complement(join(2702218..2703234,2703236..2703307)) 1 NC_008261.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 2703307 prfB 4201900 prfB Clostridium perfringens ATCC 13124 peptide chain release factor 2 YP_696849.1 2702218 R 195103 CDS YP_696850.1 110799230 4201799 complement(2703566..2706088) 1 NC_008261.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2706088 secA 4201799 secA Clostridium perfringens ATCC 13124 preprotein translocase subunit SecA YP_696850.1 2703566 R 195103 CDS YP_696851.1 110799719 4201203 complement(2706323..2706862) 1 NC_008261.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 2706862 raiA 4201203 raiA Clostridium perfringens ATCC 13124 ribosomal subunit interface protein YP_696851.1 2706323 R 195103 CDS YP_696852.1 110800186 4203680 complement(2707314..2707973) 1 NC_008261.1 competence protein FC 2707973 4203680 CPF_2431 Clostridium perfringens ATCC 13124 competence protein FC YP_696852.1 2707314 R 195103 CDS YP_696853.1 110800615 4202245 complement(2707949..2708911) 1 NC_008261.1 hypothetical protein 2708911 4202245 CPF_2432 Clostridium perfringens ATCC 13124 hypothetical protein YP_696853.1 2707949 R 195103 CDS YP_696854.1 110800894 4202799 complement(2708929..2711163) 1 NC_008261.1 identified by match to protein family HMM TIGR01448; recombinase D 2711163 4202799 CPF_2433 Clostridium perfringens ATCC 13124 recombinase D YP_696854.1 2708929 R 195103 CDS YP_696855.1 110798833 4202492 2711300..2712436 1 NC_008261.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 2712436 nagA 4202492 nagA Clostridium perfringens ATCC 13124 N-acetylglucosamine-6-phosphate deacetylase YP_696855.1 2711300 D 195103 CDS YP_696856.1 110799593 4203392 complement(2712572..2713747) 1 NC_008261.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2713747 metK 4203392 metK Clostridium perfringens ATCC 13124 S-adenosylmethionine synthetase YP_696856.1 2712572 R 195103 CDS YP_696857.1 110801257 4201563 complement(2714966..2715610) 1 NC_008261.1 hypothetical protein 2715610 4201563 CPF_2443 Clostridium perfringens ATCC 13124 hypothetical protein YP_696857.1 2714966 R 195103 CDS YP_696858.1 110799147 4200978 2715716..2716246 1 NC_008261.1 identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841; sporulation protein YyaC 2716246 yyaC 4200978 yyaC Clostridium perfringens ATCC 13124 sporulation protein YyaC YP_696858.1 2715716 D 195103 CDS YP_696859.1 110799985 4201255 complement(2716285..2717322) 1 NC_008261.1 identified by similarity to SP:P39751; match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 2717322 mbl 4201255 mbl Clostridium perfringens ATCC 13124 rod shape-determining protein Mbl YP_696859.1 2716285 R 195103 CDS YP_696860.1 110800060 4203767 complement(2717413..2717664) 1 NC_008261.1 identified by similarity to SP:P15281; match to protein family HMM TIGR02844; stage III sporulation protein D 2717664 spoIIID 4203767 spoIIID Clostridium perfringens ATCC 13124 stage III sporulation protein D YP_696860.1 2717413 R 195103 CDS YP_696861.1 110800862 4201284 complement(2717741..2718511) 1 NC_008261.1 identified by match to protein family HMM PF01551; peptidase 2718511 4201284 CPF_2447 Clostridium perfringens ATCC 13124 peptidase YP_696861.1 2717741 R 195103 CDS YP_696862.1 110798809 4201785 complement(2718621..2719643) 1 NC_008261.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870; stage II sporulation protein D 2719643 spoIID 4201785 spoIID Clostridium perfringens ATCC 13124 stage II sporulation protein D YP_696862.1 2718621 R 195103 CDS YP_696863.1 110799515 4202068 complement(2719755..2721020) 1 NC_008261.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2721020 murA 4202068 murA Clostridium perfringens ATCC 13124 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_696863.1 2719755 R 195103 CDS YP_696864.1 110798887 4203422 complement(2721043..2721687) 1 NC_008261.1 identified by similarity to PIR:C97252; hypothetical protein 2721687 4203422 CPF_2450 Clostridium perfringens ATCC 13124 hypothetical protein YP_696864.1 2721043 R 195103 CDS YP_696865.1 110800154 4203551 complement(2721869..2722270) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 2722270 atpC 4203551 atpC Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit epsilon YP_696865.1 2721869 R 195103 CDS YP_696866.1 110800751 4201603 complement(2722286..2723683) 1 NC_008261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 2723683 atpD 4201603 atpD Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit beta YP_696866.1 2722286 R 195103 CDS YP_696867.1 110800116 4203883 complement(2723697..2724548) 1 NC_008261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 2724548 atpG 4203883 atpG Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit gamma YP_696867.1 2723697 R 195103 CDS YP_696868.1 110799900 4203916 complement(2724613..2726121) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2726121 atpA 4203916 atpA Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit alpha YP_696868.1 2724613 R 195103 CDS YP_696869.1 110799264 4203059 complement(2726132..2726671) 1 NC_008261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 2726671 atpH 4203059 atpH Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit delta YP_696869.1 2726132 R 195103 CDS YP_696870.1 110798870 4201148 complement(2726674..2727153) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B 2727153 atpF 4201148 atpF Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit B YP_696870.1 2726674 R 195103 CDS YP_696871.1 110800530 4201186 complement(2727253..2727471) 1 NC_008261.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 2727471 atpE 4201186 atpE Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit C YP_696871.1 2727253 R 195103 CDS YP_696872.1 110798805 4201781 complement(2727532..2728206) 1 NC_008261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2728206 atpB 4201781 atpB Clostridium perfringens ATCC 13124 ATP synthase F0F1 subunit A YP_696872.1 2727532 R 195103 CDS YP_696873.1 110800737 4201413 complement(2728272..2728628) 1 NC_008261.1 hypothetical protein 2728628 4201413 CPF_2459 Clostridium perfringens ATCC 13124 hypothetical protein YP_696873.1 2728272 R 195103 CDS YP_696874.1 110799474 4201344 complement(2729310..2730488) 1 NC_008261.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2730488 4201344 CPF_2460 Clostridium perfringens ATCC 13124 acetyl-CoA acetyltransferase YP_696874.1 2729310 R 195103 CDS YP_696875.1 110798808 4201784 complement(2730756..2731910) 1 NC_008261.1 identified by similarity to SP:P39131; match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 2731910 mnaA 4201784 mnaA Clostridium perfringens ATCC 13124 UDP-N-acetylglucosamine 2-epimerase YP_696875.1 2730756 R 195103 CDS YP_696876.1 110801145 4201005 complement(2731974..2732603) 1 NC_008261.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2732603 upp 4201005 upp Clostridium perfringens ATCC 13124 uracil phosphoribosyltransferase YP_696876.1 2731974 R 195103 CDS YP_696877.1 110800386 4201818 complement(2732648..2733097) 1 NC_008261.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2733097 rpiB 4201818 rpiB Clostridium perfringens ATCC 13124 ribose-5-phosphate isomerase B YP_696877.1 2732648 R 195103 CDS YP_696878.1 110800830 4203922 complement(2733361..2734413) 1 NC_008261.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 2734413 4203922 CPF_2464 Clostridium perfringens ATCC 13124 Sua5/YciO/YrdC/YwlC family protein YP_696878.1 2733361 R 195103 CDS YP_696879.1 110799997 4201267 complement(2734436..2735026) 1 NC_008261.1 identified by similarity to PIR:G97254; hypothetical protein 2735026 4201267 CPF_2465 Clostridium perfringens ATCC 13124 hypothetical protein YP_696879.1 2734436 R 195103 CDS YP_696880.1 110799590 4202688 complement(2735105..2736187) 1 NC_008261.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2736187 prfA 4202688 prfA Clostridium perfringens ATCC 13124 peptide chain release factor 1 YP_696880.1 2735105 R 195103 CDS YP_696881.1 110798817 4201793 complement(2736244..2738007) 1 NC_008261.1 identified by match to protein family HMM PF05175; match to protein family HMM PF07136; match to protein family HMM TIGR00536; HemK family methyltransferase 2738007 4201793 CPF_2467 Clostridium perfringens ATCC 13124 HemK family methyltransferase YP_696881.1 2736244 R 195103 CDS YP_696882.1 110800423 4203803 complement(2738033..2738632) 1 NC_008261.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2738632 tdk 4203803 tdk Clostridium perfringens ATCC 13124 thymidine kinase YP_696882.1 2738033 R 195103 CDS YP_696883.1 110801256 4201562 2738788..2738994 1 NC_008261.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2738994 rpmE 4201562 rpmE Clostridium perfringens ATCC 13124 50S ribosomal protein L31 YP_696883.1 2738788 D 195103 CDS YP_696884.1 110799153 4202834 2739103..2740227 1 NC_008261.1 identified by match to protein family HMM PF06925; monogalactosyldiacylglycerol synthase 2740227 4202834 CPF_2470 Clostridium perfringens ATCC 13124 monogalactosyldiacylglycerol synthase YP_696884.1 2739103 D 195103 CDS YP_696885.2 261876159 4203781 complement(2740270..2741739) 1 NC_008261.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2741739 rho 4203781 rho Clostridium perfringens ATCC 13124 transcription termination factor Rho YP_696885.2 2740270 R 195103 CDS YP_696886.1 110800874 4203868 complement(2741994..2743601) 1 NC_008261.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2743601 pyrG 4203868 pyrG Clostridium perfringens ATCC 13124 CTP synthetase YP_696886.1 2741994 R 195103 CDS YP_696887.1 110799141 4200972 complement(2743942..2744361) 1 NC_008261.1 identified by similarity to GB:AAO34936.1; hypothetical protein 2744361 4200972 CPF_2473 Clostridium perfringens ATCC 13124 hypothetical protein YP_696887.1 2743942 R 195103 CDS YP_696888.1 110799347 4203085 complement(2744384..2745364) 1 NC_008261.1 identified by match to protein family HMM PF02568; thiamin biosynthesis protein ThiI 2745364 4203085 CPF_2474 Clostridium perfringens ATCC 13124 thiamin biosynthesis protein ThiI YP_696888.1 2744384 R 195103 CDS YP_696889.1 110800353 4202020 complement(2745410..2746039) 1 NC_008261.1 identified by similarity to SP:P39151; match to protein family HMM TIGR02837; stage II sporulation protein R 2746039 4202020 CPF_2475 Clostridium perfringens ATCC 13124 stage II sporulation protein R YP_696889.1 2745410 R 195103 CDS YP_696890.1 110800275 4203615 complement(2746109..2746975) 1 NC_008261.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2746975 ipk 4203615 ipk Clostridium perfringens ATCC 13124 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_696890.1 2746109 R 195103 CDS YP_696891.1 110801078 4201752 complement(2747111..2749735) 1 NC_008261.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 2749735 cphA 4201752 cphA Clostridium perfringens ATCC 13124 cyanophycin synthetase YP_696891.1 2747111 R 195103 CDS YP_696892.1 110798797 4201134 complement(2749722..2750558) 1 NC_008261.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069; cyanophycinase 2750558 cphB 4201134 cphB Clostridium perfringens ATCC 13124 cyanophycinase YP_696892.1 2749722 R 195103 CDS YP_696893.1 110799972 4203754 complement(2750649..2752211) 1 NC_008261.1 identified by match to protein family HMM PF01476; lysM domain-containing protein 2752211 4203754 CPF_2479 Clostridium perfringens ATCC 13124 lysM domain-containing protein YP_696893.1 2750649 R 195103 CDS YP_696894.1 110800592 4202358 complement(2752571..2752807) 1 NC_008261.1 identified by match to protein family HMM PF06257; hypothetical protein 2752807 4202358 CPF_2480 Clostridium perfringens ATCC 13124 hypothetical protein YP_696894.1 2752571 R 195103 CDS YP_696895.1 110800118 4203885 complement(2752970..2753857) 1 NC_008261.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855; peptidase 2753857 4203885 CPF_2481 Clostridium perfringens ATCC 13124 peptidase YP_696895.1 2752970 R 195103 CDS YP_696896.1 110800776 4201762 complement(2754056..2755060) 1 NC_008261.1 identified by similarity to SP:P46914; match to protein family HMM PF01636; match to protein family HMM TIGR02906; spore coat protein CotS 2755060 cotS 4201762 cotS Clostridium perfringens ATCC 13124 spore coat protein CotS YP_696896.1 2754056 R 195103 CDS YP_696897.1 110799323 4202186 2755169..2756296 1 NC_008261.1 identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534; mannosyltransferase 2756296 mtfB 4202186 mtfB Clostridium perfringens ATCC 13124 mannosyltransferase YP_696897.1 2755169 D 195103 CDS YP_696898.1 110799397 4203272 complement(2756479..2757507) 1 NC_008261.1 identified by similarity to SP:P46914; match to protein family HMM PF01633; match to protein family HMM TIGR02906; spore coat protein 2757507 4203272 CPF_2484 Clostridium perfringens ATCC 13124 spore coat protein YP_696898.1 2756479 R 195103 CDS YP_696899.1 110801315 4201916 complement(2757523..2758206) 1 NC_008261.1 identified by similarity to GB:AAO34914.1; hypothetical protein 2758206 4201916 CPF_2485 Clostridium perfringens ATCC 13124 hypothetical protein YP_696899.1 2757523 R 195103 CDS YP_696900.1 110798987 4201110 complement(2758214..2759221) 1 NC_008261.1 identified by similarity to SP:P46914; match to protein family HMM TIGR02906; spore coat protein 2759221 4201110 CPF_2486 Clostridium perfringens ATCC 13124 spore coat protein YP_696900.1 2758214 R 195103 CDS YP_696901.1 110800322 4202164 2759350..2760495 1 NC_008261.1 identified by match to protein family HMM PF00534; mannosyltransferase 2760495 4202164 CPF_2487 Clostridium perfringens ATCC 13124 mannosyltransferase YP_696901.1 2759350 D 195103 CDS YP_696902.1 110800972 4202291 complement(2760729..2761259) 1 NC_008261.1 identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456; hypothetical protein 2761259 4202291 CPF_2488 Clostridium perfringens ATCC 13124 hypothetical protein YP_696902.1 2760729 R 195103 CDS YP_696903.1 110798731 4202428 complement(2761452..2761823) 1 NC_008261.1 identified by similarity to GB:CAC98014.1; match to protein family HMM PF07009; hypothetical protein 2761823 4202428 CPF_2489 Clostridium perfringens ATCC 13124 hypothetical protein YP_696903.1 2761452 R 195103 CDS YP_696904.1 110799295 4202625 2761964..2762407 1 NC_008261.1 identified by similarity to SP:P16055; match to protein family HMM PF04205; lipoprotein 2762407 4202625 CPF_2490 Clostridium perfringens ATCC 13124 lipoprotein YP_696904.1 2761964 D 195103 CDS YP_696905.1 110801295 4201896 2762442..2763470 1 NC_008261.1 identified by match to protein family HMM PF02424; ApbE family protein 2763470 4201896 CPF_2491 Clostridium perfringens ATCC 13124 ApbE family protein YP_696905.1 2762442 D 195103 CDS YP_696906.1 110798826 4202485 complement(2763593..2764717) 1 NC_008261.1 identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH 2764717 4202485 CPF_2492 Clostridium perfringens ATCC 13124 ethanolamine utilization protein EutH YP_696906.1 2763593 R 195103 CDS YP_696907.1 110800389 4201821 complement(2764880..2765209) 1 NC_008261.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 2765209 4201821 CPF_2493 Clostridium perfringens ATCC 13124 PTS system lactose/cellobiose-specific transporter subunit IIB YP_696907.1 2764880 R 195103 CDS YP_696908.1 110801229 4203306 complement(2765439..2766818) 1 NC_008261.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 2766818 4203306 CPF_2494 Clostridium perfringens ATCC 13124 serine protease YP_696908.1 2765439 R 195103 CDS YP_696909.1 110800831 4203923 complement(2766935..2767918) 1 NC_008261.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 2767918 4203923 CPF_2495 Clostridium perfringens ATCC 13124 alpha/beta hydrolase YP_696909.1 2766935 R 195103 CDS YP_696910.1 110798788 4201125 complement(2767969..2768988) 1 NC_008261.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2768988 gcp 4201125 gcp Clostridium perfringens ATCC 13124 DNA-binding/iron metalloprotein/AP endonuclease YP_696910.1 2767969 R 195103 CDS YP_696911.1 110801204 4203125 2769130..2769762 1 NC_008261.1 identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 2769762 4203125 CPF_2497 Clostridium perfringens ATCC 13124 endodeoxyribonuclease RusA YP_696911.1 2769130 D 195103 CDS YP_696912.1 110798988 4201111 2769771..2770331 1 NC_008261.1 identified by similarity to SP:P29679; match to protein family HMM PF00657; acyl-CoA thioesterase 2770331 4201111 CPF_2498 Clostridium perfringens ATCC 13124 acyl-CoA thioesterase YP_696912.1 2769771 D 195103 CDS YP_696913.1 110799776 4203519 complement(2770468..2771430) 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase 2771430 4203519 CPF_2499 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide family oxidoreductase YP_696913.1 2770468 R 195103 CDS YP_696914.1 110800201 4202978 complement(2771462..2772034) 1 NC_008261.1 identified by similarity to GB:AAM25067.1; match to protein family HMM PF01206; hypothetical protein 2772034 4202978 CPF_2500 Clostridium perfringens ATCC 13124 hypothetical protein YP_696914.1 2771462 R 195103 CDS YP_696915.1 110801025 4201937 2772216..2774105 1 NC_008261.1 identified by match to protein family HMM PF00884; sulfatase 2774105 4201937 CPF_2501 Clostridium perfringens ATCC 13124 sulfatase YP_696915.1 2772216 D 195103 CDS YP_696916.1 110800817 4201087 complement(2774242..2775765) 1 NC_008261.1 lipoprotein 2775765 4201087 CPF_2502 Clostridium perfringens ATCC 13124 lipoprotein YP_696916.1 2774242 R 195103 CDS YP_696917.1 110801437 4203033 complement(2775782..2777197) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2777197 4203033 CPF_2503 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_696917.1 2775782 R 195103 CDS YP_696918.1 110799600 4203399 complement(2777378..2778061) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2778061 4203399 CPF_2504 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_696918.1 2777378 R 195103 CDS YP_696919.1 110801010 4201355 complement(2783830..2784399) 1 NC_008261.1 identified by match to protein family HMM PF02417; chromate transport protein 2784399 4201355 CPF_2508 Clostridium perfringens ATCC 13124 chromate transport protein YP_696919.1 2783830 R 195103 CDS YP_696920.1 110799018 4202268 complement(2784386..2784937) 1 NC_008261.1 identified by match to protein family HMM PF02417; chromate transport protein 2784937 4202268 CPF_2509 Clostridium perfringens ATCC 13124 chromate transport protein YP_696920.1 2784386 R 195103 CDS YP_696921.1 110799662 4202586 2785365..2786078 1 NC_008261.1 identified by similarity to GB:AAP09835.1; lipoprotein 2786078 4202586 CPF_2510 Clostridium perfringens ATCC 13124 lipoprotein YP_696921.1 2785365 D 195103 CDS YP_696922.1 110800634 4201992 2786062..2786223 1 NC_008261.1 hypothetical protein 2786223 4201992 CPF_2511 Clostridium perfringens ATCC 13124 hypothetical protein YP_696922.1 2786062 D 195103 CDS YP_696923.1 110798741 4200941 complement(2786410..2787861) 1 NC_008261.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 2787861 pepD 4200941 pepD Clostridium perfringens ATCC 13124 aminoacyl-histidine dipeptidase YP_696923.1 2786410 R 195103 CDS YP_696924.1 110799383 4203258 complement(2790232..2790702) 1 NC_008261.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; Ser/Thr protein phosphatase 2790702 4203258 CPF_2534 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_696924.1 2790232 R 195103 CDS YP_696925.1 110800365 4201974 complement(2790714..2791328) 1 NC_008261.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2791328 4201974 CPF_2535 Clostridium perfringens ATCC 13124 deoxyribonucleotide triphosphate pyrophosphatase YP_696925.1 2790714 R 195103 CDS YP_696926.1 110799614 4201488 complement(2791330..2792076) 1 NC_008261.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 2792076 rph 4201488 rph Clostridium perfringens ATCC 13124 ribonuclease PH YP_696926.1 2791330 R 195103 CDS YP_696927.1 110801330 4201931 2792289..2794001 1 NC_008261.1 identified by similarity to PIR:B97228; hypothetical protein 2794001 4201931 CPF_2537 Clostridium perfringens ATCC 13124 hypothetical protein YP_696927.1 2792289 D 195103 CDS YP_696928.1 110800684 4202527 complement(2794270..2795790) 1 NC_008261.1 identified by match to protein family HMM PF00496; solute-binding family 5 protein 2795790 4202527 CPF_2538 Clostridium perfringens ATCC 13124 solute-binding family 5 protein YP_696928.1 2794270 R 195103 CDS YP_696929.1 110799058 4202561 complement(2796948..2797412) 1 NC_008261.1 hypothetical protein 2797412 4202561 CPF_2539 Clostridium perfringens ATCC 13124 hypothetical protein YP_696929.1 2796948 R 195103 CDS YP_696930.1 110798871 4201149 2797536..2797859 1 NC_008261.1 identified by similarity to PIR:D97228; hypothetical protein 2797859 4201149 CPF_2540 Clostridium perfringens ATCC 13124 hypothetical protein YP_696930.1 2797536 D 195103 CDS YP_696931.1 110801053 4202605 complement(2797896..2799884) 1 NC_008261.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2799884 ligA 4202605 ligA Clostridium perfringens ATCC 13124 NAD-dependent DNA ligase LigA YP_696931.1 2797896 R 195103 CDS YP_696932.1 110800092 4202456 complement(2799922..2802177) 1 NC_008261.1 identified by similarity to SP:P56255; match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 2802177 pcrA 4202456 pcrA Clostridium perfringens ATCC 13124 ATP-dependent DNA helicase PcrA YP_696932.1 2799922 R 195103 CDS YP_696933.1 110799858 4203445 complement(2802389..2803177) 1 NC_008261.1 hypothetical protein 2803177 4203445 CPF_2543 Clostridium perfringens ATCC 13124 hypothetical protein YP_696933.1 2802389 R 195103 CDS YP_696934.1 110799277 4203073 complement(2803194..2803742) 1 NC_008261.1 hypothetical protein 2803742 4203073 CPF_2544 Clostridium perfringens ATCC 13124 hypothetical protein YP_696934.1 2803194 R 195103 CDS YP_696935.1 110801143 4201003 complement(2803744..2804415) 1 NC_008261.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; anchor protein 2804415 4201003 CPF_2545 Clostridium perfringens ATCC 13124 anchor protein YP_696935.1 2803744 R 195103 CDS YP_696936.1 110800371 4201980 complement(2804968..2805687) 1 NC_008261.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; 16S pseudouridylate synthase 2805687 4201980 CPF_2546 Clostridium perfringens ATCC 13124 16S pseudouridylate synthase YP_696936.1 2804968 R 195103 CDS YP_696937.1 110801206 4203127 complement(2806061..2808121) 1 NC_008261.1 identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein 2808121 4203127 CPF_2547 Clostridium perfringens ATCC 13124 triple tyrosine motif-containing protein YP_696937.1 2806061 R 195103 CDS YP_696938.1 110799250 4202074 complement(2808494..2808943) 1 NC_008261.1 hypothetical protein 2808943 4202074 CPF_2548 Clostridium perfringens ATCC 13124 hypothetical protein YP_696938.1 2808494 R 195103 CDS YP_696939.1 110799337 4202200 complement(2809141..2810493) 1 NC_008261.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2810493 pgi 4202200 pgi Clostridium perfringens ATCC 13124 glucose-6-phosphate isomerase YP_696939.1 2809141 R 195103 CDS YP_696940.1 110801036 4201948 complement(2810523..2810732) 1 NC_008261.1 identified by similarity to GB:BAD71068.1; hypothetical protein 2810732 4201948 CPF_2550 Clostridium perfringens ATCC 13124 hypothetical protein YP_696940.1 2810523 R 195103 CDS YP_696941.1 110798784 4201121 complement(2810934..2811902) 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 2811902 4201121 CPF_2551 Clostridium perfringens ATCC 13124 oligopeptide/dipeptide ABC transporter ATP-binding protein YP_696941.1 2810934 R 195103 CDS YP_696942.1 110800549 4202901 complement(2811903..2812880) 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 2812880 4202901 CPF_2552 Clostridium perfringens ATCC 13124 oligopeptide/dipeptide ABC transporter ATP-binding protein YP_696942.1 2811903 R 195103 CDS YP_696943.1 110801186 4203107 complement(2812894..2813808) 1 NC_008261.1 identified by similarity to SP:P94312; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 2813808 4203107 CPF_2553 Clostridium perfringens ATCC 13124 oligopeptide/dipeptide ABC transporter permease YP_696943.1 2812894 R 195103 CDS YP_696944.1 110801278 4201585 complement(2813823..2814788) 1 NC_008261.1 identified by similarity to SP:P42062; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 2814788 4201585 CPF_2554 Clostridium perfringens ATCC 13124 oligopeptide/dipeptide ABC transporter permease YP_696944.1 2813823 R 195103 CDS YP_696945.1 110799167 4202848 complement(2814863..2816605) 1 NC_008261.1 identified by similarity to SP:P42061; match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein 2816605 4202848 CPF_2555 Clostridium perfringens ATCC 13124 oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein YP_696945.1 2814863 R 195103 CDS YP_696946.1 110799060 4202563 2817237..2818529 1 NC_008261.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2818529 4202563 CPF_2556 Clostridium perfringens ATCC 13124 major facilitator family transporter YP_696946.1 2817237 D 195103 CDS YP_696947.1 110800712 4202459 complement(2818882..2820411) 1 NC_008261.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2820411 guaA 4202459 guaA Clostridium perfringens ATCC 13124 GMP synthase YP_696947.1 2818882 R 195103 CDS YP_696948.1 110800169 4203566 complement(2820518..2821972) 1 NC_008261.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2821972 guaB 4203566 guaB Clostridium perfringens ATCC 13124 inosine 5'-monophosphate dehydrogenase YP_696948.1 2820518 R 195103 CDS YP_696949.1 110798585 4201230 complement(2822682..2825303) 1 NC_008261.1 hypothetical protein 2825303 4201230 CPF_2559 Clostridium perfringens ATCC 13124 hypothetical protein YP_696949.1 2822682 R 195103 CDS YP_696950.1 110799598 4203397 complement(2825327..2825887) 1 NC_008261.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 2825887 4203397 CPF_2560 Clostridium perfringens ATCC 13124 prepilin-type N-terminal cleavage/methylation domain-containing protein YP_696950.1 2825327 R 195103 CDS YP_696951.1 110800188 4203682 complement(2825913..2828021) 1 NC_008261.1 hypothetical protein 2828021 4203682 CPF_2561 Clostridium perfringens ATCC 13124 hypothetical protein YP_696951.1 2825913 R 195103 CDS YP_696952.1 110801196 4203117 complement(2828026..2829027) 1 NC_008261.1 hypothetical protein 2829027 4203117 CPF_2562 Clostridium perfringens ATCC 13124 hypothetical protein YP_696952.1 2828026 R 195103 CDS YP_696953.1 110799122 4203052 complement(2829048..2830265) 1 NC_008261.1 hypothetical protein 2830265 4203052 CPF_2563 Clostridium perfringens ATCC 13124 hypothetical protein YP_696953.1 2829048 R 195103 CDS YP_696954.1 110799937 4201461 complement(2830255..2830821) 1 NC_008261.1 hypothetical protein 2830821 4201461 CPF_2564 Clostridium perfringens ATCC 13124 hypothetical protein YP_696954.1 2830255 R 195103 CDS YP_696955.1 110800339 4202103 complement(2830836..2831951) 1 NC_008261.1 identified by similarity to PIR:S77726; match to protein family HMM TIGR01175; type IV pilus assembly protein PilM 2831951 4202103 CPF_2565 Clostridium perfringens ATCC 13124 type IV pilus assembly protein PilM YP_696955.1 2830836 R 195103 CDS YP_696956.1 110800720 4202467 complement(2832064..2832564) 1 NC_008261.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 2832564 4202467 CPF_2566 Clostridium perfringens ATCC 13124 type IV pilin YP_696956.1 2832064 R 195103 CDS YP_696957.1 110799716 4201200 complement(2832577..2833041) 1 NC_008261.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 2833041 4201200 CPF_2567 Clostridium perfringens ATCC 13124 type IV pilin YP_696957.1 2832577 R 195103 CDS YP_696958.1 110800846 4201268 complement(2833099..2833626) 1 NC_008261.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 2833626 4201268 CPF_2568 Clostridium perfringens ATCC 13124 type IV pilin YP_696958.1 2833099 R 195103 CDS YP_696959.1 110800691 4203820 complement(2833642..2834847) 1 NC_008261.1 identified by match to protein family HMM PF00482; type II secretion system protein F 2834847 4203820 CPF_2569 Clostridium perfringens ATCC 13124 type II secretion system protein F YP_696959.1 2833642 R 195103 CDS YP_696960.1 110799562 4203497 complement(2834874..2836562) 1 NC_008261.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; secretion system protein E 2836562 4203497 CPF_2570 Clostridium perfringens ATCC 13124 secretion system protein E YP_696960.1 2834874 R 195103 CDS YP_696961.1 110798578 4202724 complement(2836632..2837375) 1 NC_008261.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; Type IV leader peptidase 2837375 4202724 CPF_2571 Clostridium perfringens ATCC 13124 Type IV leader peptidase YP_696961.1 2836632 R 195103 CDS YP_696962.1 110800340 4202104 complement(2837652..2838074) 1 NC_008261.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 2838074 4202104 CPF_2572 Clostridium perfringens ATCC 13124 type IV pilin YP_696962.1 2837652 R 195103 CDS YP_696963.1 110799227 4201796 complement(2838740..2840359) 1 NC_008261.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 2840359 groEL 4201796 groEL Clostridium perfringens ATCC 13124 molecular chaperone GroEL YP_696963.1 2838740 R 195103 CDS YP_696964.1 110800041 4203708 complement(2840414..2840698) 1 NC_008261.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2840698 groES 4203708 groES Clostridium perfringens ATCC 13124 co-chaperonin GroES YP_696964.1 2840414 R 195103 CDS YP_696965.1 110800472 4201555 2841071..2841721 1 NC_008261.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein 2841721 4201555 CPF_2575 Clostridium perfringens ATCC 13124 hypothetical protein YP_696965.1 2841071 D 195103 CDS YP_696966.1 110799852 4203439 2841870..2842175 1 NC_008261.1 identified by similarity to GB:AAV96664.1; hypothetical protein 2842175 4203439 CPF_2576 Clostridium perfringens ATCC 13124 hypothetical protein YP_696966.1 2841870 D 195103 CDS YP_696967.1 110799731 4203162 complement(2842298..2843236) 1 NC_008261.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934; 8-oxoguanine DNA glycosylase 2843236 4203162 CPF_2577 Clostridium perfringens ATCC 13124 8-oxoguanine DNA glycosylase YP_696967.1 2842298 R 195103 CDS YP_696968.1 110801190 4203111 complement(2843246..2843650) 1 NC_008261.1 identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909; hypothetical protein 2843650 4203111 CPF_2578 Clostridium perfringens ATCC 13124 hypothetical protein YP_696968.1 2843246 R 195103 CDS YP_696969.1 110800133 4203530 complement(2843892..2844392) 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228; signal peptidase I 2844392 4203530 CPF_2579 Clostridium perfringens ATCC 13124 signal peptidase I YP_696969.1 2843892 R 195103 CDS YP_696970.1 110799513 4202066 complement(2844534..2846234) 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 2846234 4202066 CPF_2580 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein/permease YP_696970.1 2844534 R 195103 CDS YP_696971.1 110798647 4202695 complement(2846494..2847342) 1 NC_008261.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 2847342 hbd 4202695 hbd Clostridium perfringens ATCC 13124 3-hydroxybutyryl-CoA dehydrogenase YP_696971.1 2846494 R 195103 CDS YP_696972.1 110800722 4202469 complement(2847456..2848463) 1 NC_008261.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; 3-hydroxybutyryl-CoA dehydrogenase 2848463 4202469 CPF_2582 Clostridium perfringens ATCC 13124 3-hydroxybutyryl-CoA dehydrogenase YP_696972.1 2847456 R 195103 CDS YP_696973.1 110800501 4203356 complement(2848485..2849264) 1 NC_008261.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 2849264 4203356 CPF_2583 Clostridium perfringens ATCC 13124 electron transfer flavoprotein subunit beta/FixA family protein YP_696973.1 2848485 R 195103 CDS YP_696974.1 110801111 4203286 complement(2849283..2850422) 1 NC_008261.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 2850422 bcd 4203286 bcd Clostridium perfringens ATCC 13124 butyryl-CoA dehydrogenase YP_696974.1 2849283 R 195103 CDS YP_696975.1 110799215 4201220 complement(2850469..2851251) 1 NC_008261.1 catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase 2851251 crt 4201220 crt Clostridium perfringens ATCC 13124 3-hydroxybutyryl-CoA dehydratase YP_696975.1 2850469 R 195103 CDS YP_696976.1 110799884 4203900 complement(2851514..2852152) 1 NC_008261.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2852152 4203900 CPF_2586 Clostridium perfringens ATCC 13124 redox-sensing transcriptional repressor Rex YP_696976.1 2851514 R 195103 CDS YP_696977.1 110800762 4201614 complement(2852618..2854834) 1 NC_008261.1 identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 2854834 cadA 4201614 cadA Clostridium perfringens ATCC 13124 cadmium-translocating P-type ATPase YP_696977.1 2852618 R 195103 CDS YP_696978.1 110798688 4202210 complement(2854850..2855209) 1 NC_008261.1 identified by similarity to SP:Q56405; match to protein family HMM PF01022; cadmium resistance transcriptional regulator CadC 2855209 4202210 CPF_2588 Clostridium perfringens ATCC 13124 cadmium resistance transcriptional regulator CadC YP_696978.1 2854850 R 195103 CDS YP_696979.1 110800256 4201843 complement(2855344..2855964) 1 NC_008261.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080; GntR family transcriptional regulator 2855964 4201843 CPF_2589 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_696979.1 2855344 R 195103 CDS YP_696980.1 110798818 4202477 complement(2856054..2856632) 1 NC_008261.1 identified by similarity to PIR:B97000; hypothetical protein 2856632 4202477 CPF_2590 Clostridium perfringens ATCC 13124 hypothetical protein YP_696980.1 2856054 R 195103 CDS YP_696981.1 110799610 4203410 complement(2857017..2857463) 1 NC_008261.1 hypothetical protein 2857463 4203410 CPF_2591 Clostridium perfringens ATCC 13124 hypothetical protein YP_696981.1 2857017 R 195103 CDS YP_696982.1 110801369 4203253 complement(2857812..2858300) 1 NC_008261.1 identified by similarity to SP:Q07024; mannose-6-phosphate isomerase 2858300 4203253 CPF_2592 Clostridium perfringens ATCC 13124 mannose-6-phosphate isomerase YP_696982.1 2857812 R 195103 CDS YP_696983.1 110800763 4201615 2858295..2858726 1 NC_008261.1 identified by similarity to GB:AAL94212.1; hypothetical protein 2858726 4201615 CPF_2593 Clostridium perfringens ATCC 13124 hypothetical protein YP_696983.1 2858295 D 195103 CDS YP_696984.1 110799660 4202584 complement(2858899..2859681) 1 NC_008261.1 identified by similarity to GB:CAD77645.1; hypothetical protein 2859681 4202584 CPF_2594 Clostridium perfringens ATCC 13124 hypothetical protein YP_696984.1 2858899 R 195103 CDS YP_696985.1 110800586 4202352 complement(2859714..2860430) 1 NC_008261.1 identified by similarity to GB:AAP24370.1; match to protein family HMM PF01863; hypothetical protein 2860430 4202352 CPF_2595 Clostridium perfringens ATCC 13124 hypothetical protein YP_696985.1 2859714 R 195103 CDS YP_696986.1 110800925 4202108 complement(2860476..2863655) 1 NC_008261.1 identified by similarity to GB:AAM00850.1; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 2863655 hsdR 4202108 hsdR Clostridium perfringens ATCC 13124 type I restriction-modification system, R subunit YP_696986.1 2860476 R 195103 CDS YP_696987.1 110798822 4202481 complement(2864026..2865114) 1 NC_008261.1 identified by similarity to GB:AAS39764.1; hypothetical protein 2865114 4202481 CPF_2597 Clostridium perfringens ATCC 13124 hypothetical protein YP_696987.1 2864026 R 195103 CDS YP_696988.1 110800744 4201421 complement(2865161..2866414) 1 NC_008261.1 identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit 2866414 hsdS 4201421 hsdS Clostridium perfringens ATCC 13124 type I restriction-modification enzyme, S subunit YP_696988.1 2865161 R 195103 CDS YP_696989.1 110799934 4201458 complement(2866431..2867948) 1 NC_008261.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 2867948 hsdM 4201458 hsdM Clostridium perfringens ATCC 13124 type I restriction-modification system, M subunit YP_696989.1 2866431 R 195103 CDS YP_696990.1 110801354 4203238 2868111..2869184 1 NC_008261.1 hypothetical protein 2869184 4203238 CPF_2600 Clostridium perfringens ATCC 13124 hypothetical protein YP_696990.1 2868111 D 195103 CDS YP_696991.1 110800378 4201987 2869248..2869631 1 NC_008261.1 identified by similarity to SP:P06533; match to protein family HMM PF01381; transcriptional regulator 2869631 4201987 CPF_2601 Clostridium perfringens ATCC 13124 transcriptional regulator YP_696991.1 2869248 D 195103 CDS YP_696992.1 110799548 4202645 2869842..2870000 1 NC_008261.1 hypothetical protein 2870000 4202645 CPF_2602 Clostridium perfringens ATCC 13124 hypothetical protein YP_696992.1 2869842 D 195103 CDS YP_696993.1 110799073 4201041 2869990..2871759 1 NC_008261.1 identified by match to protein family HMM PF00239; resolvase 2871759 4201041 CPF_2603 Clostridium perfringens ATCC 13124 resolvase YP_696993.1 2869990 D 195103 CDS YP_696994.1 110800035 4203956 2871743..2873401 1 NC_008261.1 identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 2873401 4203956 CPF_2604 Clostridium perfringens ATCC 13124 resolvase site-specific recombinase YP_696994.1 2871743 D 195103 CDS YP_696995.1 110799587 4202685 2873469..2873642 1 NC_008261.1 hypothetical protein 2873642 4202685 CPF_2605 Clostridium perfringens ATCC 13124 hypothetical protein YP_696995.1 2873469 D 195103 CDS YP_696996.1 110798914 4202145 2873655..2875259 1 NC_008261.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 2875259 4202145 CPF_2606 Clostridium perfringens ATCC 13124 resolvase site-specific recombinase YP_696996.1 2873655 D 195103 CDS YP_696997.1 110800806 4202242 2875271..2876059 1 NC_008261.1 identified by match to protein family HMM PF02163; membrane-associated zinc metalloprotease 2876059 4202242 CPF_2608 Clostridium perfringens ATCC 13124 membrane-associated zinc metalloprotease YP_696997.1 2875271 D 195103 CDS YP_696998.1 110799039 4201295 complement(2875963..2876772) 1 NC_008261.1 identified by match to protein family HMM PF00483; nucleotidyl transferase 2876772 4201295 CPF_2607 Clostridium perfringens ATCC 13124 nucleotidyl transferase YP_696998.1 2875963 R 195103 CDS YP_696999.1 110801305 4201906 complement(2877009..2878388) 1 NC_008261.1 identified by match to protein family HMM PF00232; glycosyl hydrolase 2878388 4201906 CPF_2609 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_696999.1 2877009 R 195103 CDS YP_697000.1 110799992 4201262 complement(2879085..2880461) 1 NC_008261.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2880461 4201262 CPF_2610 Clostridium perfringens ATCC 13124 aldehyde dehydrogenase YP_697000.1 2879085 R 195103 CDS YP_697001.1 110799113 4203043 complement(2880612..2881322) 1 NC_008261.1 identified by similarity to GB:AAO36364.1; hypothetical protein 2881322 4203043 CPF_2611 Clostridium perfringens ATCC 13124 hypothetical protein YP_697001.1 2880612 R 195103 CDS YP_697002.1 110798733 4202430 2881431..2882372 1 NC_008261.1 identified by similarity to GB:AAP11025.1; hypothetical protein 2882372 4202430 CPF_2612 Clostridium perfringens ATCC 13124 hypothetical protein YP_697002.1 2881431 D 195103 CDS YP_697003.1 110800779 4201765 complement(2882619..2883515) 1 NC_008261.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase 2883515 4201765 CPF_2613 Clostridium perfringens ATCC 13124 RNA pseudouridine synthase YP_697003.1 2882619 R 195103 CDS YP_697004.1 110801008 4201353 complement(2883537..2884550) 1 NC_008261.1 hypothetical protein 2884550 4201353 CPF_2614 Clostridium perfringens ATCC 13124 hypothetical protein YP_697004.1 2883537 R 195103 CDS YP_697005.1 110800406 4202035 complement(2884611..2885288) 1 NC_008261.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 2885288 4202035 CPF_2615 Clostridium perfringens ATCC 13124 sortase YP_697005.1 2884611 R 195103 CDS YP_697006.1 110799737 4203168 2885638..2886108 1 NC_008261.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2886108 ispF 4203168 ispF Clostridium perfringens ATCC 13124 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_697006.1 2885638 D 195103 CDS YP_697007.1 110799281 4203077 complement(2886284..2887597) 1 NC_008261.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 2887597 4203077 CPF_2617 Clostridium perfringens ATCC 13124 Na+/H+ antiporter family protein YP_697007.1 2886284 R 195103 CDS YP_697008.1 110800563 4201434 complement(2887935..2888777) 1 NC_008261.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 2888777 4201434 CPF_2618 Clostridium perfringens ATCC 13124 pyridoxamine kinase YP_697008.1 2887935 R 195103 CDS YP_697009.1 110799912 4203207 complement(2889451..2890143) 1 NC_008261.1 hypothetical protein 2890143 4203207 CPF_2623 Clostridium perfringens ATCC 13124 hypothetical protein YP_697009.1 2889451 R 195103 CDS YP_697010.1 110800174 4203668 2890333..2890737 1 NC_008261.1 identified by similarity to PIR:F97027; hypothetical protein 2890737 4203668 CPF_2624 Clostridium perfringens ATCC 13124 hypothetical protein YP_697010.1 2890333 D 195103 CDS YP_697011.1 110800777 4201763 complement(2890796..2892205) 1 NC_008261.1 identified by match to protein family HMM PF00657; hypothetical protein 2892205 4201763 CPF_2625 Clostridium perfringens ATCC 13124 hypothetical protein YP_697011.1 2890796 R 195103 CDS YP_697012.1 110801319 4201920 2893473..2895404 1 NC_008261.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2895404 thrS 4201920 thrS Clostridium perfringens ATCC 13124 threonyl-tRNA synthetase YP_697012.1 2893473 D 195103 CDS YP_697013.1 110799051 4201307 complement(2895873..2897567) 1 NC_008261.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289; M3 family oligoendopeptidase 2897567 4201307 CPF_2632 Clostridium perfringens ATCC 13124 M3 family oligoendopeptidase YP_697013.1 2895873 R 195103 CDS YP_697014.1 110799478 4202322 complement(2897663..2898241) 1 NC_008261.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 2898241 4202322 CPF_2633 Clostridium perfringens ATCC 13124 5-formyltetrahydrofolate cyclo-ligase YP_697014.1 2897663 R 195103 CDS YP_697015.1 110800094 4202399 complement(2898467..2899279) 1 NC_008261.1 identified by similarity to PIR:B97349; hypothetical protein 2899279 4202399 CPF_2634 Clostridium perfringens ATCC 13124 hypothetical protein YP_697015.1 2898467 R 195103 CDS YP_697016.1 110800745 4201422 complement(2899493..2899663) 1 NC_008261.1 hypothetical protein 2899663 4201422 CPF_2635 Clostridium perfringens ATCC 13124 hypothetical protein YP_697016.1 2899493 R 195103 CDS YP_697017.1 110798687 4202209 complement(2899683..2901515) 1 NC_008261.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2901515 glmS 4202209 glmS Clostridium perfringens ATCC 13124 glucosamine--fructose-6-phosphate aminotransferase YP_697017.1 2899683 R 195103 CDS YP_697018.1 110799500 4202053 2902307..2902831 1 NC_008261.1 identified by match to protein family HMM PF02915; hypothetical protein 2902831 4202053 CPF_2637 Clostridium perfringens ATCC 13124 hypothetical protein YP_697018.1 2902307 D 195103 CDS YP_697019.1 110800683 4202526 complement(2902981..2904327) 1 NC_008261.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2904327 glmM 4202526 glmM Clostridium perfringens ATCC 13124 phosphoglucosamine mutase YP_697019.1 2902981 R 195103 CDS YP_697020.1 110801324 4201925 2904800..2906092 1 NC_008261.1 identified by similarity to GB:AAO79146.1; hypothetical protein 2906092 4201925 CPF_2639 Clostridium perfringens ATCC 13124 hypothetical protein YP_697020.1 2904800 D 195103 CDS YP_697021.1 110798722 4202419 complement(2906353..2907285) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2907285 4202419 CPF_2640 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_697021.1 2906353 R 195103 CDS YP_697022.1 110799704 4203388 complement(2908599..2908916) 1 NC_008261.1 identified by similarity to PIR:A96964; match to protein family HMM PF07561; hypothetical protein 2908916 4203388 CPF_2642 Clostridium perfringens ATCC 13124 hypothetical protein YP_697022.1 2908599 R 195103 CDS YP_697023.1 110799881 4203003 complement(2908982..2909281) 1 NC_008261.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; TrpR-like protein YerC/YecD 2909281 4203003 CPF_2643 Clostridium perfringens ATCC 13124 TrpR-like protein YerC/YecD YP_697023.1 2908982 R 195103 CDS YP_697024.1 110800034 4203955 complement(2909421..2910260) 1 NC_008261.1 identified by similarity to GB:AAM05996.1; match to protein family HMM PF01987; hypothetical protein 2910260 4203955 CPF_2644 Clostridium perfringens ATCC 13124 hypothetical protein YP_697024.1 2909421 R 195103 CDS YP_697025.1 110800570 4201441 complement(2910377..2912395) 1 NC_008261.1 identified by match to protein family HMM PF06202; match to protein family HMM TIGR01561; glycogen debranching enzyme, type 2912395 4201441 CPF_2645 Clostridium perfringens ATCC 13124 glycogen debranching enzyme, type YP_697025.1 2910377 R 195103 CDS YP_697026.1 110800659 4201703 complement(2912754..2915117) 1 NC_008261.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen/starch/alpha-glucan phosphorylase 2915117 glgP 4201703 glgP Clostridium perfringens ATCC 13124 glycogen/starch/alpha-glucan phosphorylase YP_697026.1 2912754 R 195103 CDS YP_697027.1 110801309 4201910 complement(2915110..2916603) 1 NC_008261.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2916603 malQ 4201910 malQ Clostridium perfringens ATCC 13124 4-alpha-glucanotransferase YP_697027.1 2915110 R 195103 CDS YP_697028.1 110800990 4201665 complement(2916625..2918772) 1 NC_008261.1 identified by match to protein family HMM PF01055; glycosyl hydrolase 2918772 4201665 CPF_2648 Clostridium perfringens ATCC 13124 glycosyl hydrolase YP_697028.1 2916625 R 195103 CDS YP_697029.1 110799674 4201721 complement(2918796..2919809) 1 NC_008261.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 2919809 4201721 CPF_2649 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_697029.1 2918796 R 195103 CDS YP_697030.1 110800361 4202028 complement(2920104..2920997) 1 NC_008261.1 identified by similarity to SP:Q04699; match to protein family HMM PF00528; maltose/maltodextrin ABC transporter permease 2920997 4202028 CPF_2650 Clostridium perfringens ATCC 13124 maltose/maltodextrin ABC transporter permease YP_697030.1 2920104 R 195103 CDS YP_697031.1 110800991 4201666 complement(2920999..2921952) 1 NC_008261.1 identified by similarity to SP:P02916; match to protein family HMM PF00528; maltose/maltodextrin ABC transporter permease 2921952 4201666 CPF_2651 Clostridium perfringens ATCC 13124 maltose/maltodextrin ABC transporter permease YP_697031.1 2920999 R 195103 CDS YP_697032.1 110798678 4202317 complement(2922039..2923265) 1 NC_008261.1 identified by similarity to SP:P19576; match to protein family HMM PF01547; maltose/maltodextrin ABC transporter maltose/maltodextrin-binding protein 2923265 4202317 CPF_2652 Clostridium perfringens ATCC 13124 maltose/maltodextrin ABC transporter maltose/maltodextrin-binding protein YP_697032.1 2922039 R 195103 CDS YP_697033.1 110799354 4203092 complement(2923723..2924664) 1 NC_008261.1 identified by similarity to PIR:H97297; hypothetical protein 2924664 4203092 CPF_2653 Clostridium perfringens ATCC 13124 hypothetical protein YP_697033.1 2923723 R 195103 CDS YP_697034.1 110798781 4201118 complement(2924699..2925808) 1 NC_008261.1 identified by similarity to SP:P77481; match to protein family HMM PF00005; match to protein family HMM PF03459; maltose/maltodextrin ABC transporter ATP-binding protein 2925808 4201118 CPF_2654 Clostridium perfringens ATCC 13124 maltose/maltodextrin ABC transporter ATP-binding protein YP_697034.1 2924699 R 195103 CDS YP_697035.1 110799871 4202993 complement(2926027..2927745) 1 NC_008261.1 identified by similarity to GB:BAD29951.1; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; iron hydrogenase 2927745 hydA 4202993 hydA Clostridium perfringens ATCC 13124 iron hydrogenase YP_697035.1 2926027 R 195103 CDS YP_697036.1 110800296 4202880 complement(2927971..2929041) 1 NC_008261.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 2929041 buk 4202880 buk Clostridium perfringens ATCC 13124 butyrate kinase YP_697036.1 2927971 R 195103 CDS YP_697037.1 110800939 4202122 complement(2929065..2929973) 1 NC_008261.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 2929973 ptb 4202122 ptb Clostridium perfringens ATCC 13124 phosphate butyryltransferase YP_697037.1 2929065 R 195103 CDS YP_697038.1 110801153 4201013 complement(2930156..2931757) 1 NC_008261.1 identified by similarity to PIR:F97278; match to protein family HMM PF01266; match to protein family HMM PF07992; hypothetical protein 2931757 4201013 CPF_2658 Clostridium perfringens ATCC 13124 hypothetical protein YP_697038.1 2930156 R 195103 CDS YP_697039.1 110799269 4203064 complement(2931833..2933158) 1 NC_008261.1 identified by similarity to PIR:G97278; match to protein family HMM PF07949; hypothetical protein 2933158 4203064 CPF_2659 Clostridium perfringens ATCC 13124 hypothetical protein YP_697039.1 2931833 R 195103 CDS YP_697040.1 110800705 4203834 complement(2933125..2933982) 1 NC_008261.1 identified by similarity to PIR:H97278; match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 2933982 4203834 CPF_2660 Clostridium perfringens ATCC 13124 hypothetical protein YP_697040.1 2933125 R 195103 CDS YP_697041.1 110801322 4201923 2934143..2935105 1 NC_008261.1 identified by similarity to PIR:A97279; hypothetical protein 2935105 4201923 CPF_2661 Clostridium perfringens ATCC 13124 hypothetical protein YP_697041.1 2934143 D 195103 CDS YP_697042.1 110798713 4201319 2935176..2935778 1 NC_008261.1 identified by similarity to SP:P50739; match to protein family HMM PF07486; spore-cortex-lytic enzyme 2935778 4201319 CPF_2662 Clostridium perfringens ATCC 13124 spore-cortex-lytic enzyme YP_697042.1 2935176 D 195103 CDS YP_697043.1 110799299 4202629 complement(2935810..2936670) 1 NC_008261.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992; thioredoxin reductase 2936670 4202629 CPF_2663 Clostridium perfringens ATCC 13124 thioredoxin reductase YP_697043.1 2935810 R 195103 CDS YP_697044.1 110798962 4201375 complement(2936697..2937011) 1 NC_008261.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2937011 trx 4201375 trx Clostridium perfringens ATCC 13124 thioredoxin YP_697044.1 2936697 R 195103 CDS YP_697045.1 110799505 4202058 complement(2937128..2938297) 1 NC_008261.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 2938297 iadA 4202058 iadA Clostridium perfringens ATCC 13124 isoaspartyl dipeptidase YP_697045.1 2937128 R 195103 CDS YP_697046.1 110799494 4202338 complement(2938462..2940081) 1 NC_008261.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 2940081 ptsI 4202338 ptsI Clostridium perfringens ATCC 13124 phosphoenolpyruvate-protein phosphotransferase YP_697046.1 2938462 R 195103 CDS YP_697047.1 110798683 4202205 2940556..2942562 1 NC_008261.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sigma-54 dependent transcriptional regulator/sensory box protein 2942562 4202205 CPF_2667 Clostridium perfringens ATCC 13124 sigma-54 dependent transcriptional regulator/sensory box protein YP_697047.1 2940556 D 195103 CDS YP_697048.1 110801413 4203009 complement(2942733..2943326) 1 NC_008261.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2943326 rpsD 4203009 rpsD Clostridium perfringens ATCC 13124 30S ribosomal protein S4 YP_697048.1 2942733 R 195103 CDS YP_697049.1 110800628 4202258 2943583..2943717 1 NC_008261.1 hypothetical protein 2943717 4202258 CPF_2669 Clostridium perfringens ATCC 13124 hypothetical protein YP_697049.1 2943583 D 195103 CDS YP_697050.1 110801267 4201574 complement(2943727..2944761) 1 NC_008261.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2944761 nrdF 4201574 nrdF Clostridium perfringens ATCC 13124 ribonucleotide-diphosphate reductase subunit beta YP_697050.1 2943727 R 195103 CDS YP_697051.1 110800461 4201544 complement(2944857..2947088) 1 NC_008261.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2947088 nrdA 4201544 nrdA Clostridium perfringens ATCC 13124 ribonucleotide-diphosphate reductase subunit alpha YP_697051.1 2944857 R 195103 CDS YP_697052.1 110800179 4203673 complement(2947372..2947728) 1 NC_008261.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family protein 2947728 4203673 CPF_2672 Clostridium perfringens ATCC 13124 ArsC family protein YP_697052.1 2947372 R 195103 CDS YP_697053.1 110799735 4203166 complement(2947900..2949651) 1 NC_008261.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2949651 4203166 CPF_2673 Clostridium perfringens ATCC 13124 sensor histidine kinase YP_697053.1 2947900 R 195103 CDS YP_697054.1 110799262 4202086 complement(2949704..2950402) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2950402 drrA 4202086 drrA Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_697054.1 2949704 R 195103 CDS YP_697055.1 110799095 4202815 2950656..2951513 1 NC_008261.1 identified by similarity to GB:AAM24676.1; match to protein family HMM PF02588; hypothetical protein 2951513 4202815 CPF_2675 Clostridium perfringens ATCC 13124 hypothetical protein YP_697055.1 2950656 D 195103 CDS YP_697056.1 110799813 4203691 complement(2951774..2952445) 1 NC_008261.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883; N-acetylmuramoyl-L-alanine amidase 2952445 cwlD 4203691 cwlD Clostridium perfringens ATCC 13124 N-acetylmuramoyl-L-alanine amidase YP_697056.1 2951774 R 195103 CDS YP_697057.1 110800403 4202032 complement(2952636..2954249) 1 NC_008261.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein 2954249 4202032 CPF_2677 Clostridium perfringens ATCC 13124 Na/Pi-cotransporter family protein/PhoU family protein YP_697057.1 2952636 R 195103 CDS YP_697058.1 110798864 4201142 complement(2954640..2955032) 1 NC_008261.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2955032 rpsI 4201142 rpsI Clostridium perfringens ATCC 13124 30S ribosomal protein S9 YP_697058.1 2954640 R 195103 CDS YP_697059.1 110798874 4201152 complement(2955059..2955493) 1 NC_008261.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2955493 rplM 4201152 rplM Clostridium perfringens ATCC 13124 50S ribosomal protein L13 YP_697059.1 2955059 R 195103 CDS YP_697060.1 110799502 4202055 complement(2955640..2956374) 1 NC_008261.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2956374 truA 4202055 truA Clostridium perfringens ATCC 13124 tRNA pseudouridine synthase A YP_697060.1 2955640 R 195103 CDS YP_697061.1 110800175 4203669 complement(2956532..2957338) 1 NC_008261.1 identified by match to protein family HMM PF02361; cobalt ABC transporter permease 2957338 4203669 CPF_2681 Clostridium perfringens ATCC 13124 cobalt ABC transporter permease YP_697061.1 2956532 R 195103 CDS YP_697062.1 110800816 4201086 complement(2957354..2958211) 1 NC_008261.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2958211 cbiO 4201086 cbiO Clostridium perfringens ATCC 13124 cobalt transporter ATP-binding subunit YP_697062.1 2957354 R 195103 CDS YP_697063.1 110801175 4201035 complement(2958196..2959041) 1 NC_008261.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2959041 4201035 CPF_2683 Clostridium perfringens ATCC 13124 cobalt transporter ATP-binding subunit YP_697063.1 2958196 R 195103 CDS YP_697064.1 110800144 4203541 complement(2959464..2959805) 1 NC_008261.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2959805 rplQ 4203541 rplQ Clostridium perfringens ATCC 13124 50S ribosomal protein L17 YP_697064.1 2959464 R 195103 CDS YP_697065.1 110799041 4201297 complement(2959822..2960769) 1 NC_008261.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2960769 rpoA 4201297 rpoA Clostridium perfringens ATCC 13124 DNA-directed RNA polymerase subunit alpha YP_697065.1 2959822 R 195103 CDS YP_697066.1 110801306 4201907 complement(2960854..2961474) 1 NC_008261.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2961474 rpsD 4201907 rpsD Clostridium perfringens ATCC 13124 30S ribosomal protein S4 YP_697066.1 2960854 R 195103 CDS YP_697067.1 110800360 4202027 complement(2961498..2961893) 1 NC_008261.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2961893 rpsK 4202027 rpsK Clostridium perfringens ATCC 13124 30S ribosomal protein S11 YP_697067.1 2961498 R 195103 CDS YP_697068.1 110801380 4203461 complement(2961910..2962275) 1 NC_008261.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2962275 rpsM 4203461 rpsM Clostridium perfringens ATCC 13124 30S ribosomal protein S13 YP_697068.1 2961910 R 195103 CDS YP_697069.1 110800578 4202344 complement(2962512..2962625) 1 NC_008261.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 2962625 rpmJ 4202344 rpmJ Clostridium perfringens ATCC 13124 50S ribosomal protein L36 YP_697069.1 2962512 R 195103 CDS YP_697070.1 110800093 4202457 complement(2962638..2962856) 1 NC_008261.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2962856 infA 4202457 infA Clostridium perfringens ATCC 13124 translation initiation factor IF-1 YP_697070.1 2962638 R 195103 CDS YP_697071.1 110799333 4202196 complement(2962864..2963172) 1 NC_008261.1 identified by similarity to PIR:G97282; hypothetical protein 2963172 4202196 CPF_2691 Clostridium perfringens ATCC 13124 hypothetical protein YP_697071.1 2962864 R 195103 CDS YP_697072.1 110799994 4201264 complement(2963231..2963980) 1 NC_008261.1 identified by similarity to SP:P19994; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 2963980 map 4201264 map Clostridium perfringens ATCC 13124 methionine aminopeptidase YP_697072.1 2963231 R 195103 CDS YP_697073.1 110800006 4203848 complement(2963980..2964630) 1 NC_008261.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2964630 adk 4203848 adk Clostridium perfringens ATCC 13124 adenylate kinase YP_697073.1 2963980 R 195103 CDS YP_697074.1 110800847 4201269 complement(2964657..2965934) 1 NC_008261.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2965934 secY 4201269 secY Clostridium perfringens ATCC 13124 preprotein translocase subunit SecY YP_697074.1 2964657 R 195103 CDS YP_697075.1 110799129 4200960 complement(2965937..2966377) 1 NC_008261.1 late assembly protein; 50S ribosomal protein L15 2966377 rplO 4200960 rplO Clostridium perfringens ATCC 13124 50S ribosomal protein L15 YP_697075.1 2965937 R 195103 CDS YP_697076.1 110799927 4201451 complement(2966411..2966584) 1 NC_008261.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2966584 rpmD 4201451 rpmD Clostridium perfringens ATCC 13124 50S ribosomal protein L30 YP_697076.1 2966411 R 195103 CDS YP_697077.1 110800455 4202375 complement(2966596..2967093) 1 NC_008261.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2967093 rpsE 4202375 rpsE Clostridium perfringens ATCC 13124 30S ribosomal protein S5 YP_697077.1 2966596 R 195103 CDS YP_697078.1 110798834 4202493 complement(2967114..2967473) 1 NC_008261.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2967473 rplR 4202493 rplR Clostridium perfringens ATCC 13124 50S ribosomal protein L18 YP_697078.1 2967114 R 195103 CDS YP_697079.1 110799462 4201332 complement(2967504..2968043) 1 NC_008261.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2968043 rplF 4201332 rplF Clostridium perfringens ATCC 13124 50S ribosomal protein L6 YP_697079.1 2967504 R 195103 CDS YP_697080.1 110800119 4203886 complement(2968140..2968538) 1 NC_008261.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2968538 rpsH 4203886 rpsH Clostridium perfringens ATCC 13124 30S ribosomal protein S8 YP_697080.1 2968140 R 195103 CDS YP_697081.1 110800756 4201608 complement(2968572..2968757) 1 NC_008261.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2968757 rpsN 4201608 rpsN Clostridium perfringens ATCC 13124 30S ribosomal protein S14 YP_697081.1 2968572 R 195103 CDS YP_697082.1 110798848 4201476 complement(2968774..2969313) 1 NC_008261.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2969313 rplE 4201476 rplE Clostridium perfringens ATCC 13124 50S ribosomal protein L5 YP_697082.1 2968774 R 195103 CDS YP_697083.1 110800424 4203804 complement(2969336..2969650) 1 NC_008261.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2969650 rplX 4203804 rplX Clostridium perfringens ATCC 13124 50S ribosomal protein L24 YP_697083.1 2969336 R 195103 CDS YP_697084.1 110799454 4201539 complement(2969674..2970042) 1 NC_008261.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2970042 rplN 4201539 rplN Clostridium perfringens ATCC 13124 50S ribosomal protein L14 YP_697084.1 2969674 R 195103 CDS YP_697085.1 110800244 4202768 complement(2970073..2970327) 1 NC_008261.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2970327 rpsQ 4202768 rpsQ Clostridium perfringens ATCC 13124 30S ribosomal protein S17 YP_697085.1 2970073 R 195103 CDS YP_697086.1 110801019 4201364 complement(2970349..2970558) 1 NC_008261.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2970558 rpmC 4201364 rpmC Clostridium perfringens ATCC 13124 50S ribosomal protein L29 YP_697086.1 2970349 R 195103 CDS YP_697087.1 110798970 4201383 complement(2970558..2970992) 1 NC_008261.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2970992 rplP 4201383 rplP Clostridium perfringens ATCC 13124 50S ribosomal protein L16 YP_697087.1 2970558 R 195103 CDS YP_697088.1 110800643 4202001 complement(2971023..2971691) 1 NC_008261.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2971691 rpsC 4202001 rpsC Clostridium perfringens ATCC 13124 30S ribosomal protein S3 YP_697088.1 2971023 R 195103 CDS YP_697089.1 110800033 4203954 complement(2971712..2972047) 1 NC_008261.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2972047 rplV 4203954 rplV Clostridium perfringens ATCC 13124 50S ribosomal protein L22 YP_697089.1 2971712 R 195103 CDS YP_697090.1 110800956 4203345 complement(2972075..2972356) 1 NC_008261.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2972356 rpsS 4203345 rpsS Clostridium perfringens ATCC 13124 30S ribosomal protein S19 YP_697090.1 2972075 R 195103 CDS YP_697091.1 110800049 4203717 complement(2972427..2973260) 1 NC_008261.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2973260 rplB 4203717 rplB Clostridium perfringens ATCC 13124 50S ribosomal protein L2 YP_697091.1 2972427 R 195103 CDS YP_697092.1 110798671 4202310 complement(2973315..2973608) 1 NC_008261.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2973608 rplW 4202310 rplW Clostridium perfringens ATCC 13124 50S ribosomal protein L23 YP_697092.1 2973315 R 195103 CDS YP_697093.1 110800870 4203864 complement(2973608..2974222) 1 NC_008261.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2974222 rplD 4203864 rplD Clostridium perfringens ATCC 13124 50S ribosomal protein L4 YP_697093.1 2973608 R 195103 CDS YP_697094.1 110800321 4202163 complement(2974247..2974876) 1 NC_008261.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2974876 rplC 4202163 rplC Clostridium perfringens ATCC 13124 50S ribosomal protein L3 YP_697094.1 2974247 R 195103 CDS YP_697095.1 110799526 4203188 complement(2974959..2975267) 1 NC_008261.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2975267 rpsJ 4203188 rpsJ Clostridium perfringens ATCC 13124 30S ribosomal protein S10 YP_697095.1 2974959 R 195103 CDS YP_697096.1 110801277 4201584 complement(2975963..2977156) 1 NC_008261.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2977156 tuf 4201584 tuf Clostridium perfringens ATCC 13124 elongation factor Tu YP_697096.1 2975963 R 195103 CDS YP_697097.1 110800420 4203800 complement(2977229..2979295) 1 NC_008261.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2979295 fusA 4203800 fusA Clostridium perfringens ATCC 13124 elongation factor G YP_697097.1 2977229 R 195103 CDS YP_697098.1 110799966 4203748 complement(2979376..2979846) 1 NC_008261.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2979846 rpsG 4203748 rpsG Clostridium perfringens ATCC 13124 30S ribosomal protein S7 YP_697098.1 2979376 R 195103 CDS YP_697099.1 110799165 4202846 complement(2980006..2980386) 1 NC_008261.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2980386 rpsL 4202846 rpsL Clostridium perfringens ATCC 13124 30S ribosomal protein S12 YP_697099.1 2980006 R 195103 CDS YP_697100.1 110800521 4201177 complement(2980444..2980683) 1 NC_008261.1 ribosomal protein L7AE family protein 2980683 4201177 CPF_2720 Clostridium perfringens ATCC 13124 ribosomal protein L7AE family protein YP_697100.1 2980444 R 195103 CDS YP_697101.1 110799903 4203197 complement(2980796..2984332) 1 NC_008261.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2984332 rpoC 4203197 rpoC Clostridium perfringens ATCC 13124 DNA-directed RNA polymerase subunit beta' YP_697101.1 2980796 R 195103 CDS YP_697102.1 110799233 4201802 complement(2984412..2988116) 1 NC_008261.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2988116 rpoB 4201802 rpoB Clostridium perfringens ATCC 13124 DNA-directed RNA polymerase subunit beta YP_697102.1 2984412 R 195103 CDS YP_697103.1 110801178 4203099 complement(2988421..2988786) 1 NC_008261.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 2988786 rplL 4203099 rplL Clostridium perfringens ATCC 13124 50S ribosomal protein L7/L12 YP_697103.1 2988421 R 195103 CDS YP_697104.1 110800500 4203355 complement(2988841..2989341) 1 NC_008261.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2989341 rplJ 4203355 rplJ Clostridium perfringens ATCC 13124 50S ribosomal protein L10 YP_697104.1 2988841 R 195103 CDS YP_697105.1 110798795 4201132 complement(2989558..2990247) 1 NC_008261.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 2990247 rplA 4201132 rplA Clostridium perfringens ATCC 13124 50S ribosomal protein L1 YP_697105.1 2989558 R 195103 CDS YP_697106.1 110801130 4201631 complement(2990305..2990730) 1 NC_008261.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2990730 rplK 4201631 rplK Clostridium perfringens ATCC 13124 50S ribosomal protein L11 YP_697106.1 2990305 R 195103 CDS YP_697107.1 110800065 4203772 complement(2990805..2991326) 1 NC_008261.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 2991326 nusG 4203772 nusG Clostridium perfringens ATCC 13124 transcription antitermination protein NusG YP_697107.1 2990805 R 195103 CDS YP_697108.1 110799456 4201541 complement(2991364..2991588) 1 NC_008261.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 2991588 secE 4201541 secE Clostridium perfringens ATCC 13124 preprotein translocase subunit SecE YP_697108.1 2991364 R 195103 CDS YP_697109.1 110800796 4202232 complement(2991642..2991791) 1 NC_008261.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 2991791 rpmG 4202232 rpmG Clostridium perfringens ATCC 13124 50S ribosomal protein L33 YP_697109.1 2991642 R 195103 CDS YP_697110.1 110799825 4203723 complement(2991974..2993167) 1 NC_008261.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2993167 tuf 4203723 tuf Clostridium perfringens ATCC 13124 elongation factor Tu YP_697110.1 2991974 R 195103 CDS YP_697111.1 110798736 4202433 complement(2993392..2994039) 1 NC_008261.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 2994039 sigH 4202433 sigH Clostridium perfringens ATCC 13124 RNA polymerase factor sigma-70 YP_697111.1 2993392 R 195103 CDS YP_697112.1 110799360 4203098 complement(2994120..2994629) 1 NC_008261.1 identified by similarity to GB:AAO37069.1; match to protein family HMM PF05991; hypothetical protein 2994629 4203098 CPF_2733 Clostridium perfringens ATCC 13124 hypothetical protein YP_697112.1 2994120 R 195103 CDS YP_697113.1 110800667 4201711 complement(2994645..2995514) 1 NC_008261.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 2995514 4201711 CPF_2734 Clostridium perfringens ATCC 13124 RNA methyltransferase YP_697113.1 2994645 R 195103 CDS YP_697114.1 110801337 4203220 complement(2995537..2996274) 1 NC_008261.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2996274 thyX 4203220 thyX Clostridium perfringens ATCC 13124 FAD-dependent thymidylate synthase YP_697114.1 2995537 R 195103 CDS YP_697115.2 261876165 4201040 complement(2996290..2996700) 1 NC_008261.1 identified by similarity to PIR:B97288; match to protein family HMM PF00636; hypothetical protein 2996700 4201040 CPF_2736 Clostridium perfringens ATCC 13124 hypothetical protein YP_697115.2 2996290 R 195103 CDS YP_697116.1 110799706 4203390 complement(2996927..2998327) 1 NC_008261.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2998327 cysS 4203390 cysS Clostridium perfringens ATCC 13124 cysteinyl-tRNA synthetase YP_697116.1 2996927 R 195103 CDS YP_697117.1 110799310 4203146 complement(2998432..3000144) 1 NC_008261.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3000144 proS 4203146 proS Clostridium perfringens ATCC 13124 prolyl-tRNA synthetase YP_697117.1 2998432 R 195103 CDS YP_697118.1 110800301 4202885 complement(3000499..3001176) 1 NC_008261.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3001176 ispD 4202885 ispD Clostridium perfringens ATCC 13124 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_697118.1 3000499 R 195103 CDS YP_697119.1 110801396 4203477 complement(3001190..3002296) 1 NC_008261.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 3002296 4203477 CPF_2740 Clostridium perfringens ATCC 13124 PIN/TRAM domain-containing protein YP_697119.1 3001190 R 195103 CDS YP_697120.1 110801189 4203110 3002608..3003009 1 NC_008261.1 identified by similarity to GB:AAO37078.1; hypothetical protein 3003009 4203110 CPF_2741 Clostridium perfringens ATCC 13124 hypothetical protein YP_697120.1 3002608 D 195103 CDS YP_697121.1 110799987 4201257 complement(3004125..3005486) 1 NC_008261.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3005486 radA 4201257 radA Clostridium perfringens ATCC 13124 DNA repair protein RadA YP_697121.1 3004125 R 195103 CDS YP_697122.1 110800408 4202037 complement(3005737..3006465) 1 NC_008261.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3006465 nagB 4202037 nagB Clostridium perfringens ATCC 13124 glucosamine-6-phosphate deaminase YP_697122.1 3005737 R 195103 CDS YP_697123.1 110800141 4203538 complement(3006462..3007184) 1 NC_008261.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3007184 4203538 CPF_2745 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_697123.1 3006462 R 195103 CDS YP_697124.1 110800826 4201096 3007384..3007548 1 NC_008261.1 hypothetical protein 3007548 4201096 CPF_2746 Clostridium perfringens ATCC 13124 hypothetical protein YP_697124.1 3007384 D 195103 CDS YP_697125.1 110798900 4202131 3007642..3007869 1 NC_008261.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; YruB family glutaredoxin-like protein 3007869 4202131 CPF_2747 Clostridium perfringens ATCC 13124 YruB family glutaredoxin-like protein YP_697125.1 3007642 D 195103 CDS YP_697126.1 110799520 4203182 complement(3007991..3009439) 1 NC_008261.1 identified by similarity to SP:Q59931; match to protein family HMM PF00171; glyceraldehyde-3-phosphate dehydrogenase 3009439 gapN 4203182 gapN Clostridium perfringens ATCC 13124 glyceraldehyde-3-phosphate dehydrogenase YP_697126.1 3007991 R 195103 CDS YP_697127.1 110800313 4202155 complement(3009456..3009689) 1 NC_008261.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; YruB family glutaredoxin-like protein 3009689 4202155 CPF_2749 Clostridium perfringens ATCC 13124 YruB family glutaredoxin-like protein YP_697127.1 3009456 R 195103 CDS YP_697128.1 110799292 4202622 complement(3009692..3010630) 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; thioredoxin-disulfide reductase 3010630 trxB 4202622 trxB Clostridium perfringens ATCC 13124 thioredoxin-disulfide reductase YP_697128.1 3009692 R 195103 CDS YP_697129.1 110800045 4203713 complement(3010907..3013351) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence MecB/ClpC 3013351 clpC 4203713 clpC Clostridium perfringens ATCC 13124 negative regulator of genetic competence MecB/ClpC YP_697129.1 3010907 R 195103 CDS YP_697130.1 110799589 4202687 complement(3013376..3014389) 1 NC_008261.1 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 3014389 4202687 CPF_2752 Clostridium perfringens ATCC 13124 ATP:guanido phosphotransferase YP_697130.1 3013376 R 195103 CDS YP_697131.1 110798798 4201774 complement(3014373..3014909) 1 NC_008261.1 identified by similarity to PIR:E97292; hypothetical protein 3014909 4201774 CPF_2753 Clostridium perfringens ATCC 13124 hypothetical protein YP_697131.1 3014373 R 195103 CDS YP_697132.1 110801241 4203318 complement(3014920..3015375) 1 NC_008261.1 identified by match to protein family HMM PF05848; transcriptional repressor 3015375 4203318 CPF_2754 Clostridium perfringens ATCC 13124 transcriptional repressor YP_697132.1 3014920 R 195103 CDS YP_697133.1 110800405 4202034 3015592..3016245 1 NC_008261.1 zinc-dependent hydrolase 3016245 4202034 CPF_2755 Clostridium perfringens ATCC 13124 zinc-dependent hydrolase YP_697133.1 3015592 D 195103 CDS YP_697134.1 110800740 4201417 complement(3016296..3017978) 1 NC_008261.1 identified by similarity to GB:AAL56990.1; match to protein family HMM PF02875; Mur ligase 3017978 4201417 CPF_2756 Clostridium perfringens ATCC 13124 Mur ligase YP_697134.1 3016296 R 195103 CDS YP_697135.1 110800097 4202402 complement(3018096..3018266) 1 NC_008261.1 identified by similarity to SP:P22846; match to protein family HMM PF00037; ferredoxin 3018266 4202402 CPF_2757 Clostridium perfringens ATCC 13124 ferredoxin YP_697135.1 3018096 R 195103 CDS YP_697136.1 110801255 4203332 complement(3018435..3019340) 1 NC_008261.1 identified by match to protein family HMM PF04468; PSP1 domain-containing protein 3019340 4203332 CPF_2758 Clostridium perfringens ATCC 13124 PSP1 domain-containing protein YP_697136.1 3018435 R 195103 CDS YP_697137.1 110800633 4201991 complement(3019343..3020266) 1 NC_008261.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3020266 4201991 CPF_2759 Clostridium perfringens ATCC 13124 DNA polymerase III subunit delta' YP_697137.1 3019343 R 195103 CDS YP_697138.1 110800376 4201985 complement(3020288..3020617) 1 NC_008261.1 identified by similarity to PIR:E96936; match to protein family HMM PF06153; hypothetical protein 3020617 4201985 CPF_2760 Clostridium perfringens ATCC 13124 hypothetical protein YP_697138.1 3020288 R 195103 CDS YP_697139.1 110799226 4201795 complement(3020774..3020929) 1 NC_008261.1 hypothetical protein 3020929 4201795 CPF_2761 Clostridium perfringens ATCC 13124 hypothetical protein YP_697139.1 3020774 R 195103 CDS YP_697140.1 110800011 4203853 complement(3020946..3021536) 1 NC_008261.1 identified by similarity to PIR:D96936; guanylate kinase 3021536 4203853 CPF_2762 Clostridium perfringens ATCC 13124 guanylate kinase YP_697140.1 3020946 R 195103 CDS YP_697141.2 261876158 4203854 complement(3021783..3023213) 1 NC_008261.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 3023213 4203854 CPF_2763 Clostridium perfringens ATCC 13124 Orn/Lys/Arg decarboxylase YP_697141.2 3021783 R 195103 CDS YP_697142.1 110800978 4202297 complement(3023231..3023407) 1 NC_008261.1 identified by similarity to SP:P37534; csfB protein 3023407 4202297 CPF_2764 Clostridium perfringens ATCC 13124 csfB protein YP_697142.1 3023231 R 195103 CDS YP_697143.1 110798920 4200984 3023563..3024732 1 NC_008261.1 amidohydrolase 3024732 4200984 CPF_2765 Clostridium perfringens ATCC 13124 amidohydrolase YP_697143.1 3023563 D 195103 CDS YP_697144.1 110799511 4202064 complement(3024761..3025258) 1 NC_008261.1 identified by similarity to GB:AAO34865.1; hypothetical protein 3025258 4202064 CPF_2766 Clostridium perfringens ATCC 13124 hypothetical protein YP_697144.1 3024761 R 195103 CDS YP_697145.1 110798891 4203426 3025533..3026477 1 NC_008261.1 identified by match to protein family HMM PF01544; cation transporter 3026477 4203426 CPF_2767 Clostridium perfringens ATCC 13124 cation transporter YP_697145.1 3025533 D 195103 CDS YP_697146.1 110799344 4203082 3026569..3027450 1 NC_008261.1 identified by match to protein family HMM PF02016; LD-carboxypeptidase 3027450 4203082 CPF_2768 Clostridium perfringens ATCC 13124 LD-carboxypeptidase YP_697146.1 3026569 D 195103 CDS YP_697147.1 110801072 4201746 complement(3034751..3036127) 1 NC_008261.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3036127 murD 4201746 murD Clostridium perfringens ATCC 13124 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_697147.1 3034751 R 195103 CDS YP_697148.1 110798649 4202697 3036438..3037481 1 NC_008261.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 3037481 4202697 CPF_2775 Clostridium perfringens ATCC 13124 biotin synthase YP_697148.1 3036438 D 195103 CDS YP_697149.1 110799746 4203177 complement(3037723..3038964) 1 NC_008261.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 3038964 4203177 CPF_2776 Clostridium perfringens ATCC 13124 oxidoreductase YP_697149.1 3037723 R 195103 CDS YP_697150.1 110800252 4201839 complement(3039056..3039925) 1 NC_008261.1 identified by match to protein family HMM PF02016; LD-carboxypeptidase 3039925 4201839 CPF_2777 Clostridium perfringens ATCC 13124 LD-carboxypeptidase YP_697150.1 3039056 R 195103 CDS YP_697151.1 110798716 4201322 complement(3040098..3041216) 1 NC_008261.1 identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883; peptidase T-like protein 3041216 4201322 CPF_2778 Clostridium perfringens ATCC 13124 peptidase T-like protein YP_697151.1 3040098 R 195103 CDS YP_697152.1 110798906 4202137 complement(3041404..3042807) 1 NC_008261.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 3042807 glyS 4202137 glyS Clostridium perfringens ATCC 13124 glycyl-tRNA synthetase YP_697152.1 3041404 R 195103 CDS YP_697153.1 110800440 4202360 complement(3043495..3045000) 1 NC_008261.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3045000 lysS 4202360 lysS Clostridium perfringens ATCC 13124 lysyl-tRNA synthetase YP_697153.1 3043495 R 195103 CDS YP_697154.1 110799156 4202837 complement(3045026..3045502) 1 NC_008261.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3045502 greA 4202837 greA Clostridium perfringens ATCC 13124 transcription elongation factor GreA YP_697154.1 3045026 R 195103 CDS YP_697155.1 110799132 4200963 complement(3045781..3046761) 1 NC_008261.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase 3046761 4200963 CPF_2783 Clostridium perfringens ATCC 13124 dihydrouridine synthase YP_697155.1 3045781 R 195103 CDS YP_697156.1 110799940 4201464 complement(3046768..3047547) 1 NC_008261.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 3047547 4201464 CPF_2784 Clostridium perfringens ATCC 13124 pantothenate kinase YP_697156.1 3046768 R 195103 CDS YP_697157.1 110800131 4203898 complement(3047750..3049420) 1 NC_008261.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 3049420 fhs 4203898 fhs Clostridium perfringens ATCC 13124 formate--tetrahydrofolate ligase YP_697157.1 3047750 R 195103 CDS YP_697158.1 110800961 4203350 complement(3049622..3051427) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 3051427 ftsH 4203350 ftsH Clostridium perfringens ATCC 13124 ATP-dependent metalloprotease FtsH YP_697158.1 3049622 R 195103 CDS YP_697159.1 110801235 4203312 complement(3051502..3052053) 1 NC_008261.1 identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 3052053 hpt 4203312 hpt Clostridium perfringens ATCC 13124 hypoxanthine phosphoribosyltransferase YP_697159.1 3051502 R 195103 CDS YP_697160.2 261876168 4201894 complement(3052056..3053465) 1 NC_008261.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 3053465 tilS 4201894 tilS Clostridium perfringens ATCC 13124 tRNA(Ile)-lysidine synthetase YP_697160.2 3052056 R 195103 CDS YP_697161.1 110800430 4203810 complement(3053682..3056072) 1 NC_008261.1 identified by similarity to SP:P37475; match to protein family HMM PF07228; match to protein family HMM TIGR02865; stage II sporulation protein E 3056072 spoIIE 4203810 spoIIE Clostridium perfringens ATCC 13124 stage II sporulation protein E YP_697161.1 3053682 R 195103 CDS YP_697162.1 110801416 4203012 complement(3057379..3057783) 1 NC_008261.1 identified by match to protein family HMM PF00575; hypothetical protein 3057783 4203012 CPF_2797 Clostridium perfringens ATCC 13124 hypothetical protein YP_697162.1 3057379 R 195103 CDS YP_697163.1 110799855 4203442 complement(3057843..3058163) 1 NC_008261.1 identified by match to protein family HMM PF04977; cell division protein FtsL 3058163 4203442 CPF_2798 Clostridium perfringens ATCC 13124 cell division protein FtsL YP_697163.1 3057843 R 195103 CDS YP_697164.1 110799365 4203630 complement(3058259..3058633) 1 NC_008261.1 identified by similarity to PIR:E97294; match to protein family HMM TIGR02893; spore cortex biosynthesis protein YabQ 3058633 yabQ 4203630 yabQ Clostridium perfringens ATCC 13124 spore cortex biosynthesis protein YabQ YP_697164.1 3058259 R 195103 CDS YP_697165.1 110800066 4203773 complement(3058643..3058942) 1 NC_008261.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892; sporulation protein YabP 3058942 yabP 4203773 yabP Clostridium perfringens ATCC 13124 sporulation protein YabP YP_697165.1 3058643 R 195103 CDS YP_697166.1 110801090 4202859 complement(3059073..3059333) 1 NC_008261.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 3059333 4202859 CPF_2801 Clostridium perfringens ATCC 13124 S4 domain-containing protein YP_697166.1 3059073 R 195103 CDS YP_697167.1 110801137 4201638 complement(3059441..3059716) 1 NC_008261.1 identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU 3059716 hup 4201638 hup Clostridium perfringens ATCC 13124 DNA-binding protein HU YP_697167.1 3059441 R 195103 CDS YP_697168.1 110800524 4201180 complement(3059933..3061384) 1 NC_008261.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 3061384 4201180 CPF_2803 Clostridium perfringens ATCC 13124 MazG family protein YP_697168.1 3059933 R 195103 CDS YP_697169.1 110799918 4203213 complement(3061414..3062946) 1 NC_008261.1 identified by match to protein family HMM PF01943; stage V sporulation protein B 3062946 spoVB 4203213 spoVB Clostridium perfringens ATCC 13124 stage V sporulation protein B YP_697169.1 3061414 R 195103 CDS YP_697170.1 110801373 4203454 complement(3063139..3063687) 1 NC_008261.1 identified by similarity to SP:P37554; match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851; stage V sprulation protein T 3063687 spoVT 4203454 spoVT Clostridium perfringens ATCC 13124 stage V sprulation protein T YP_697170.1 3063139 R 195103 CDS YP_697171.1 110799431 4202546 complement(3063880..3064908) 1 NC_008261.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 3064908 prsA 4202546 prsA Clostridium perfringens ATCC 13124 peptidyl-prolyl isomerase YP_697171.1 3063880 R 195103 CDS YP_697172.1 110799729 4203160 complement(3065009..3068497) 1 NC_008261.1 identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 3068497 mfd 4203160 mfd Clostridium perfringens ATCC 13124 transcription-repair coupling factor YP_697172.1 3065009 R 195103 CDS YP_697173.1 110798942 4202173 complement(3068546..3069112) 1 NC_008261.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3069112 pth 4202173 pth Clostridium perfringens ATCC 13124 peptidyl-tRNA hydrolase YP_697173.1 3068546 R 195103 CDS YP_697174.1 110800498 4203353 complement(3069238..3070395) 1 NC_008261.1 identified by match to protein family HMM PF00595; PDZ domain-containing protein 3070395 4203353 CPF_2809 Clostridium perfringens ATCC 13124 PDZ domain-containing protein YP_697174.1 3069238 R 195103 CDS YP_697175.1 110799967 4203749 complement(3071824..3072510) 1 NC_008261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3072510 4203749 CPF_2811 Clostridium perfringens ATCC 13124 DNA-binding response regulator YP_697175.1 3071824 R 195103 CDS YP_697176.1 110799133 4200964 complement(3072782..3073741) 1 NC_008261.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3073741 prsA 4200964 prsA Clostridium perfringens ATCC 13124 ribose-phosphate pyrophosphokinase YP_697176.1 3072782 R 195103 CDS YP_697177.1 110798806 4201782 complement(3073798..3075162) 1 NC_008261.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3075162 glmU 4201782 glmU Clostridium perfringens ATCC 13124 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_697177.1 3073798 R 195103 CDS YP_697178.1 110799621 4201495 complement(3075372..3075644) 1 NC_008261.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 3075644 4201495 CPF_2814 Clostridium perfringens ATCC 13124 regulatory protein SpoVG YP_697178.1 3075372 R 195103 CDS YP_697179.1 110800431 4203811 complement(3075755..3076558) 1 NC_008261.1 identified by similarity to SP:P37551; match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 3076558 purR 4203811 purR Clostridium perfringens ATCC 13124 pur operon repressor YP_697179.1 3075755 R 195103 CDS YP_697180.2 261876162 4201340 3076892..3078292 1 NC_008261.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3078292 murC 4201340 murC Clostridium perfringens ATCC 13124 UDP-N-acetylmuramate--L-alanine ligase YP_697180.2 3076892 D 195103 CDS YP_697181.1 110799864 4202986 3078504..3079523 1 NC_008261.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 3079523 4202986 CPF_2817 Clostridium perfringens ATCC 13124 LacI family transcriptional regulator YP_697181.1 3078504 D 195103 CDS YP_697182.1 110799224 4201229 3079639..3080457 1 NC_008261.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3080457 punA 4201229 punA Clostridium perfringens ATCC 13124 purine nucleoside phosphorylase YP_697182.1 3079639 D 195103 CDS YP_697183.1 110801028 4201940 3080537..3081763 1 NC_008261.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter 3081763 4201940 CPF_2819 Clostridium perfringens ATCC 13124 NupC family nucleoside transporter YP_697183.1 3080537 D 195103 CDS YP_697184.2 261876154 4202940 complement(3081839..3082915) 1 NC_008261.1 identified by match to protein family HMM PF00557; M24 family metallopeptidase 3082915 4202940 CPF_2820 Clostridium perfringens ATCC 13124 M24 family metallopeptidase YP_697184.2 3081839 R 195103 CDS YP_697185.1 110799445 4201529 3083083..3083781 1 NC_008261.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; Ser/Thr protein phosphatase 3083781 4201529 CPF_2821 Clostridium perfringens ATCC 13124 Ser/Thr protein phosphatase YP_697185.1 3083083 D 195103 CDS YP_697186.1 110798636 4201689 complement(3083918..3085132) 1 NC_008261.1 identified by match to protein family HMM PF00173; heme/steroid binding domain-containing protein 3085132 4201689 CPF_2822 Clostridium perfringens ATCC 13124 heme/steroid binding domain-containing protein YP_697186.1 3083918 R 195103 CDS YP_697187.1 110798948 4202179 3085544..3086941 1 NC_008261.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 3086941 asnC 4202179 asnC Clostridium perfringens ATCC 13124 asparaginyl-tRNA synthetase YP_697187.1 3085544 D 195103 CDS YP_697188.1 110801394 4203475 complement(3087255..3088736) 1 NC_008261.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3088736 4203475 CPF_2824 Clostridium perfringens ATCC 13124 leucyl aminopeptidase YP_697188.1 3087255 R 195103 CDS YP_697189.1 110800269 4203609 complement(3088885..3089436) 1 NC_008261.1 hypothetical protein 3089436 4203609 CPF_2825 Clostridium perfringens ATCC 13124 hypothetical protein YP_697189.1 3088885 R 195103 CDS YP_697190.1 110799332 4202195 complement(3089566..3090075) 1 NC_008261.1 identified by similarity to GB:AAD00216.1; match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 3090075 nrdG 4202195 nrdG Clostridium perfringens ATCC 13124 anaerobic ribonucleoside-triphosphate reductase activating protein YP_697190.1 3089566 R 195103 CDS YP_697191.1 110801279 4201586 3090184..3090792 1 NC_008261.1 identified by match to protein family HMM PF01966; HD domain-containing protein 3090792 4201586 CPF_2827 Clostridium perfringens ATCC 13124 HD domain-containing protein YP_697191.1 3090184 D 195103 CDS YP_697192.1 110799138 4200969 complement(3090850..3092241) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 3092241 4200969 CPF_2828 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_697192.1 3090850 R 195103 CDS YP_697193.1 110798972 4201385 complement(3092624..3093622) 1 NC_008261.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 3093622 add 4201385 add Clostridium perfringens ATCC 13124 adenosine deaminase YP_697193.1 3092624 R 195103 CDS YP_697194.1 110798770 4201886 complement(3094013..3096130) 1 NC_008261.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 3096130 nrdD 4201886 nrdD Clostridium perfringens ATCC 13124 anaerobic ribonucleoside triphosphate reductase YP_697194.1 3094013 R 195103 CDS YP_697195.1 110800411 4202040 3096390..3097457 1 NC_008261.1 identified by similarity to GB:BAC12708.1; hypothetical protein 3097457 4202040 CPF_2831 Clostridium perfringens ATCC 13124 hypothetical protein YP_697195.1 3096390 D 195103 CDS YP_697196.1 110800855 4201277 3097717..3098562 1 NC_008261.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 3098562 4201277 CPF_2832 Clostridium perfringens ATCC 13124 degV family protein YP_697196.1 3097717 D 195103 CDS YP_697197.1 110798801 4201777 3098565..3099005 1 NC_008261.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3099005 4201777 CPF_2833 Clostridium perfringens ATCC 13124 PadR family transcriptional regulator YP_697197.1 3098565 D 195103 CDS YP_697198.1 110800646 4202004 complement(3099057..3099245) 1 NC_008261.1 identified by similarity to SP:P29604; ferredoxin 3099245 4202004 CPF_2834 Clostridium perfringens ATCC 13124 ferredoxin YP_697198.1 3099057 R 195103 CDS YP_697199.1 110799239 4201808 complement(3099389..3100243) 1 NC_008261.1 identified by similarity to SP:P53381; ATPase 3100243 4201808 CPF_2835 Clostridium perfringens ATCC 13124 ATPase YP_697199.1 3099389 R 195103 CDS YP_697200.1 110801144 4201004 complement(3100264..3101103) 1 NC_008261.1 identified by similarity to GB:AAO34898.1; lipoprotein 3101103 4201004 CPF_2836 Clostridium perfringens ATCC 13124 lipoprotein YP_697200.1 3100264 R 195103 CDS YP_697201.1 110800520 4201176 complement(3101093..3101863) 1 NC_008261.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3101863 lgt 4201176 lgt Clostridium perfringens ATCC 13124 prolipoprotein diacylglyceryl transferase YP_697201.1 3101093 R 195103 CDS YP_697202.1 110798810 4201786 complement(3101966..3102556) 1 NC_008261.1 identified by similarity to GB:AAO34896.1; hypothetical protein 3102556 4201786 CPF_2838 Clostridium perfringens ATCC 13124 hypothetical protein YP_697202.1 3101966 R 195103 CDS YP_697203.1 110798752 4200953 complement(3102687..3104309) 1 NC_008261.1 identified by similarity to PIR:C97267; hypothetical protein 3104309 4200953 CPF_2839 Clostridium perfringens ATCC 13124 hypothetical protein YP_697203.1 3102687 R 195103 CDS YP_697204.1 110799025 4202275 complement(3104409..3105266) 1 NC_008261.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3105266 ksgA 4202275 ksgA Clostridium perfringens ATCC 13124 dimethyladenosine transferase YP_697204.1 3104409 R 195103 CDS YP_697205.1 110801127 4201628 complement(3105278..3105826) 1 NC_008261.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 3105826 4201628 CPF_2841 Clostridium perfringens ATCC 13124 primase-like protein YP_697205.1 3105278 R 195103 CDS YP_697206.1 110800607 4203581 complement(3105967..3106989) 1 NC_008261.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 3106989 4203581 CPF_2842 Clostridium perfringens ATCC 13124 hypothetical protein YP_697206.1 3105967 R 195103 CDS YP_697207.1 110799109 4203039 complement(3107233..3108003) 1 NC_008261.1 identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010; TatD family hydrolase 3108003 4203039 CPF_2843 Clostridium perfringens ATCC 13124 TatD family hydrolase YP_697207.1 3107233 R 195103 CDS YP_697208.1 110800063 4203770 complement(3108022..3109521) 1 NC_008261.1 identified by similarity to PIR:AC1723; match to protein family HMM PF04286; hypothetical protein 3109521 4203770 CPF_2844 Clostridium perfringens ATCC 13124 hypothetical protein YP_697208.1 3108022 R 195103 CDS YP_697209.1 110799857 4203444 3109623..3110303 1 NC_008261.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 3110303 4203444 CPF_2845 Clostridium perfringens ATCC 13124 cyclic nucleotide-binding domain-containing protein YP_697209.1 3109623 D 195103 CDS YP_697210.1 110799452 4201537 complement(3110567..3112111) 1 NC_008261.1 identified by match to protein family HMM TIGR00398; methionyl-tRNA synthetase 3112111 metG 4201537 metG Clostridium perfringens ATCC 13124 methionyl-tRNA synthetase YP_697210.1 3110567 R 195103 CDS YP_697211.1 110801166 4201026 complement(3112212..3114149) 1 NC_008261.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3114149 metG 4201026 metG Clostridium perfringens ATCC 13124 methionyl-tRNA synthetase YP_697211.1 3112212 R 195103 CDS YP_697212.1 110800547 4202899 3114638..3115219 1 NC_008261.1 identified by similarity to GB:AAO35783.1; hypothetical protein 3115219 4202899 CPF_2848 Clostridium perfringens ATCC 13124 hypothetical protein YP_697212.1 3114638 D 195103 CDS YP_697213.1 110799550 4202647 3115254..3115763 1 NC_008261.1 hypothetical protein 3115763 4202647 CPF_2849 Clostridium perfringens ATCC 13124 hypothetical protein YP_697213.1 3115254 D 195103 CDS YP_697214.1 110798928 4200992 complement(3115893..3117608) 1 NC_008261.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 3117608 4200992 CPF_2850 Clostridium perfringens ATCC 13124 Na+/H+ antiporter family protein YP_697214.1 3115893 R 195103 CDS YP_697215.1 110800812 4201082 complement(3117817..3117954) 1 NC_008261.1 hypothetical protein 3117954 4201082 CPF_2851 Clostridium perfringens ATCC 13124 hypothetical protein YP_697215.1 3117817 R 195103 CDS YP_697216.1 110800759 4201611 complement(3118034..3119647) 1 NC_008261.1 identified by match to protein family HMM PF03109; hypothetical protein 3119647 4201611 CPF_2852 Clostridium perfringens ATCC 13124 hypothetical protein YP_697216.1 3118034 R 195103 CDS YP_697217.1 110799547 4202644 complement(3119787..3120125) 1 NC_008261.1 identified by similarity to PIR:B96904; hypothetical protein 3120125 4202644 CPF_2853 Clostridium perfringens ATCC 13124 hypothetical protein YP_697217.1 3119787 R 195103 CDS YP_697218.1 110799449 4201533 complement(3120233..3121477) 1 NC_008261.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase 3121477 pepP 4201533 pepP Clostridium perfringens ATCC 13124 xaa-pro aminopeptidase YP_697218.1 3120233 R 195103 CDS YP_697219.1 110798574 4202720 complement(3121625..3124222) 1 NC_008261.1 identified by similarity to SP:P33744; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 3124222 adhE 4202720 adhE Clostridium perfringens ATCC 13124 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_697219.1 3121625 R 195103 CDS YP_697220.1 110801438 4203034 complement(3124651..3125169) 1 NC_008261.1 identified by similarity to SP:P35158; match to protein family HMM PF07670; spore maturation protein B 3125169 4203034 CPF_2856 Clostridium perfringens ATCC 13124 spore maturation protein B YP_697220.1 3124651 R 195103 CDS YP_697221.1 110800069 4203776 complement(3125181..3125759) 1 NC_008261.1 identified by similarity to SP:P35157; match to protein family HMM PF07670; spore maturation protein A 3125759 4203776 CPF_2857 Clostridium perfringens ATCC 13124 spore maturation protein A YP_697221.1 3125181 R 195103 CDS YP_697222.1 110799748 4203646 3125874..3126053 1 NC_008261.1 identified by similarity to GB:BAB67566.1; hypothetical protein 3126053 4203646 CPF_2858 Clostridium perfringens ATCC 13124 hypothetical protein YP_697222.1 3125874 D 195103 CDS YP_697223.1 110799155 4202836 complement(3126093..3127460) 1 NC_008261.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 3127460 4202836 CPF_2859 Clostridium perfringens ATCC 13124 MATE efflux family protein YP_697223.1 3126093 R 195103 CDS YP_697224.1 110800276 4203616 complement(3127649..3128281) 1 NC_008261.1 hypothetical protein 3128281 4203616 CPF_2860 Clostridium perfringens ATCC 13124 hypothetical protein YP_697224.1 3127649 R 195103 CDS YP_697225.1 110800385 4201817 complement(3128394..3129086) 1 NC_008261.1 identified by match to protein family HMM PF02683; membrane protein 3129086 4201817 CPF_2861 Clostridium perfringens ATCC 13124 membrane protein YP_697225.1 3128394 R 195103 CDS YP_697226.1 110799642 4202507 complement(3129090..3129518) 1 NC_008261.1 hypothetical protein 3129518 4202507 CPF_2862 Clostridium perfringens ATCC 13124 hypothetical protein YP_697226.1 3129090 R 195103 CDS YP_697227.1 110799237 4201806 complement(3129623..3130621) 1 NC_008261.1 identified by similarity to SP:P25144; match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A 3130621 4201806 CPF_2863 Clostridium perfringens ATCC 13124 catabolite control protein A YP_697227.1 3129623 R 195103 CDS YP_697228.1 110800917 4203599 3130953..3131282 1 NC_008261.1 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 3131282 4203599 CPF_2864 Clostridium perfringens ATCC 13124 rhodanese-like domain-containing protein YP_697228.1 3130953 D 195103 CDS YP_697229.1 110800157 4203554 complement(3131328..3134447) 1 NC_008261.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 3134447 ileS 4203554 ileS Clostridium perfringens ATCC 13124 isoleucyl-tRNA synthetase YP_697229.1 3131328 R 195103 CDS YP_697230.1 110799689 4203373 3135114..3135329 1 NC_008261.1 identified by match to protein family HMM PF04324; (2Fe-2S)-binding protein 3135329 4203373 CPF_2866 Clostridium perfringens ATCC 13124 (2Fe-2S)-binding protein YP_697230.1 3135114 D 195103 CDS YP_697231.1 110798889 4203424 complement(3135494..3136102) 1 NC_008261.1 hypothetical protein 3136102 4203424 CPF_2867 Clostridium perfringens ATCC 13124 hypothetical protein YP_697231.1 3135494 R 195103 CDS YP_697232.1 110800591 4202357 complement(3136266..3138194) 1 NC_008261.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 3138194 4202357 CPF_2868 Clostridium perfringens ATCC 13124 ABC transporter ATP-binding protein YP_697232.1 3136266 R 195103 CDS YP_697233.1 110799355 4203093 complement(3138325..3138930) 1 NC_008261.1 identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357; hypothetical protein 3138930 4203093 CPF_2869 Clostridium perfringens ATCC 13124 hypothetical protein YP_697233.1 3138325 R 195103 CDS YP_697234.1 110798986 4201109 complement(3138930..3139595) 1 NC_008261.1 identified by similarity to SP:P25052; match to protein family HMM PF03070; transcriptional activator TenA 3139595 tenA 4201109 tenA Clostridium perfringens ATCC 13124 transcriptional activator TenA YP_697234.1 3138930 R 195103 CDS YP_697235.1 110799619 4201493 complement(3140020..3140334) 1 NC_008261.1 hypothetical protein 3140334 4201493 CPF_2871 Clostridium perfringens ATCC 13124 hypothetical protein YP_697235.1 3140020 R 195103 CDS YP_697236.1 110800285 4203625 3140496..3141671 1 NC_008261.1 identified by match to protein family HMM PF01170; methyltransferase 3141671 4203625 CPF_2872 Clostridium perfringens ATCC 13124 methyltransferase YP_697236.1 3140496 D 195103 CDS YP_697237.1 110800890 4202795 complement(3142044..3142391) 1 NC_008261.1 identified by similarity to PIR:B97063; match to protein family HMM PF07892; hypothetical protein 3142391 4202795 CPF_2873 Clostridium perfringens ATCC 13124 hypothetical protein YP_697237.1 3142044 R 195103 CDS YP_697238.1 110799162 4202843 complement(3142394..3143647) 1 NC_008261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase 3143647 4202843 CPF_2874 Clostridium perfringens ATCC 13124 pyridine nucleotide-disulfide family oxidoreductase YP_697238.1 3142394 R 195103 CDS YP_697239.1 110799968 4203750 complement(3143660..3145090) 1 NC_008261.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 3145090 4203750 CPF_2875 Clostridium perfringens ATCC 13124 FAD-dependent oxidoreductase YP_697239.1 3143660 R 195103 CDS YP_697240.1 110799130 4200961 complement(3145256..3146758) 1 NC_008261.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 3146758 glpK 4200961 glpK Clostridium perfringens ATCC 13124 glycerol kinase YP_697240.1 3145256 R 195103 CDS YP_697241.1 110799923 4201447 complement(3146778..3147338) 1 NC_008261.1 identified by similarity to SP:P30300; match to protein family HMM PF04309; glycerol uptake operon antiterminator 3147338 glpP 4201447 glpP Clostridium perfringens ATCC 13124 glycerol uptake operon antiterminator YP_697241.1 3146778 R 195103 CDS YP_697242.1 110800394 4201826 complement(3147380..3148087) 1 NC_008261.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 3148087 glpF 4201826 glpF Clostridium perfringens ATCC 13124 glycerol uptake facilitator protein YP_697242.1 3147380 R 195103 CDS YP_697243.1 110801271 4201578 complement(3148162..3148278) 1 NC_008261.1 hypothetical protein 3148278 4201578 CPF_2879 Clostridium perfringens ATCC 13124 hypothetical protein YP_697243.1 3148162 R 195103 CDS YP_697244.1 110800347 4202014 complement(3148353..3148796) 1 NC_008261.1 hypothetical protein 3148796 4202014 CPF_2880 Clostridium perfringens ATCC 13124 hypothetical protein YP_697244.1 3148353 R 195103 CDS YP_697245.1 110801374 4203455 complement(3149057..3149800) 1 NC_008261.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 3149800 comB 4203455 comB Clostridium perfringens ATCC 13124 2-phosphosulfolactate phosphatase YP_697245.1 3149057 R 195103 CDS YP_697246.1 110798915 4200979 complement(3149827..3150762) 1 NC_008261.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 3150762 4200979 CPF_2882 Clostridium perfringens ATCC 13124 radical SAM family protein YP_697246.1 3149827 R 195103 CDS YP_697247.1 110799727 4203158 complement(3150855..3151940) 1 NC_008261.1 lipoprotein 3151940 4203158 CPF_2883 Clostridium perfringens ATCC 13124 lipoprotein YP_697247.1 3150855 R 195103 CDS YP_697248.1 110800137 4203534 3152100..3153158 1 NC_008261.1 hypothetical protein 3153158 4203534 CPF_2884 Clostridium perfringens ATCC 13124 hypothetical protein YP_697248.1 3152100 D 195103 CDS YP_697249.1 110801016 4201361 complement(3153204..3154520) 1 NC_008261.1 identified by similarity to PIR:I40824; match to protein family HMM PF01471; spore cortex-lytic enzyme SleC 3154520 sleC 4201361 sleC Clostridium perfringens ATCC 13124 spore cortex-lytic enzyme SleC YP_697249.1 3153204 R 195103 CDS YP_697250.1 110800108 4202413 complement(3154643..3156391) 1 NC_008261.1 identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082; serine protease C 3156391 cspC 4202413 cspC Clostridium perfringens ATCC 13124 serine protease C YP_697250.1 3154643 R 195103 CDS YP_697251.1 110800758 4201610 complement(3156394..3158091) 1 NC_008261.1 identified by similarity to GB:BAB60712.1; match to protein family HMM PF00082; protease CspB 3158091 cspB 4201610 cspB Clostridium perfringens ATCC 13124 protease CspB YP_697251.1 3156394 R 195103 CDS YP_697252.1 110801435 4203031 complement(3158107..3159843) 1 NC_008261.1 identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082; serine protease A 3159843 cspA 4203031 cspA Clostridium perfringens ATCC 13124 serine protease A YP_697252.1 3158107 R 195103 CDS YP_697253.1 110798931 4200995 complement(3159984..3160655) 1 NC_008261.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381; DNA-binding protein 3160655 4200995 CPF_2889 Clostridium perfringens ATCC 13124 DNA-binding protein YP_697253.1 3159984 R 195103 CDS YP_697254.1 110799725 4201209 complement(3160657..3161031) 1 NC_008261.1 hypothetical protein 3161031 4201209 CPF_2890 Clostridium perfringens ATCC 13124 hypothetical protein YP_697254.1 3160657 R 195103 CDS YP_697255.1 110798744 4200944 complement(3161060..3161572) 1 NC_008261.1 identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 3161572 4200944 CPF_2891 Clostridium perfringens ATCC 13124 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_697255.1 3161060 R 195103 CDS YP_697256.1 110798673 4202312 complement(3161813..3162082) 1 NC_008261.1 identified by similarity to PIR:A97230; hypothetical protein 3162082 4202312 CPF_2892 Clostridium perfringens ATCC 13124 hypothetical protein YP_697256.1 3161813 R 195103 CDS YP_697257.1 110800511 4203366 complement(3162318..3163100) 1 NC_008261.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 3163100 murI 4203366 murI Clostridium perfringens ATCC 13124 glutamate racemase YP_697257.1 3162318 R 195103 CDS YP_697258.1 110799863 4203450 3163406..3165307 1 NC_008261.1 identified by match to protein family HMM PF00120; glutamine synthetase 3165307 4203450 CPF_2894 Clostridium perfringens ATCC 13124 glutamine synthetase YP_697258.1 3163406 D 195103 CDS YP_697259.1 110798902 4202133 complement(3165397..3165681) 1 NC_008261.1 identified by similarity to PIR:H96953; hypothetical protein 3165681 4202133 CPF_2895 Clostridium perfringens ATCC 13124 hypothetical protein YP_697259.1 3165397 R 195103 CDS YP_697260.1 110801154 4201014 complement(3165921..3166562) 1 NC_008261.1 identified by match to protein family HMM PF04892; vanZ family protein 3166562 4201014 CPF_2896 Clostridium perfringens ATCC 13124 vanZ family protein YP_697260.1 3165921 R 195103 CDS YP_697261.1 110800466 4201549 complement(3167173..3170376) 1 NC_008261.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3170376 carB 4201549 carB Clostridium perfringens ATCC 13124 carbamoyl phosphate synthase large subunit YP_697261.1 3167173 R 195103 CDS YP_697262.1 110799678 4201725 complement(3170389..3171438) 1 NC_008261.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3171438 carA 4201725 carA Clostridium perfringens ATCC 13124 carbamoyl phosphate synthase small subunit YP_697262.1 3170389 R 195103 CDS YP_697263.1 110801388 4203469 3172096..3172752 1 NC_008261.1 identified by similarity to GB:AAO35287.1; hypothetical protein 3172752 4203469 CPF_2899 Clostridium perfringens ATCC 13124 hypothetical protein YP_697263.1 3172096 D 195103 CDS YP_697264.1 110800553 4202905 complement(3173007..3174479) 1 NC_008261.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 3174479 4202905 CPF_2900 Clostridium perfringens ATCC 13124 [Fe] hydrogenase YP_697264.1 3173007 R 195103 CDS YP_697265.1 110799696 4203380 complement(3174548..3175165) 1 NC_008261.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 3175165 4203380 CPF_2901 Clostridium perfringens ATCC 13124 3-methyladenine DNA glycosylase YP_697265.1 3174548 R 195103 CDS YP_697266.1 110801076 4201750 complement(3175478..3175789) 1 NC_008261.1 identified by match to protein family HMM PF02255; PTS system protein 3175789 4201750 CPF_2902 Clostridium perfringens ATCC 13124 PTS system protein YP_697266.1 3175478 R 195103 CDS YP_697267.1 110800259 4201846 complement(3175890..3177137) 1 NC_008261.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3177137 proA 4201846 proA Clostridium perfringens ATCC 13124 gamma-glutamyl phosphate reductase YP_697267.1 3175890 R 195103 CDS YP_697268.1 110799603 4203403 complement(3177140..3177949) 1 NC_008261.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3177949 proB 4203403 proB Clostridium perfringens ATCC 13124 gamma-glutamyl kinase YP_697268.1 3177140 R 195103 CDS YP_697269.1 110799251 4202075 complement(3178036..3178914) 1 NC_008261.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase 3178914 4202075 CPF_2905 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_697269.1 3178036 R 195103 CDS YP_697270.1 110800857 4201279 complement(3178978..3179751) 1 NC_008261.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 3179751 4201279 CPF_2906 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_697270.1 3178978 R 195103 CDS YP_697271.1 110801107 4203282 3179937..3181229 1 NC_008261.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 3181229 4203282 CPF_2907 Clostridium perfringens ATCC 13124 xanthine/uracil permease YP_697271.1 3179937 D 195103 CDS YP_697272.1 110801304 4201905 3181320..3181547 1 NC_008261.1 hypothetical protein 3181547 4201905 CPF_2908 Clostridium perfringens ATCC 13124 hypothetical protein YP_697272.1 3181320 D 195103 CDS YP_697273.1 110801317 4201918 complement(3181613..3183256) 1 NC_008261.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 3183256 4201918 CPF_2909 Clostridium perfringens ATCC 13124 hydroxylamine reductase YP_697273.1 3181613 R 195103 CDS YP_697274.2 261876148 4201994 3183567..3184916 1 NC_008261.1 identified by match to protein family HMM PF07670; nucleoside recognition domain-containing protein 3184916 4201994 CPF_2910 Clostridium perfringens ATCC 13124 nucleoside recognition domain-containing protein YP_697274.2 3183567 D 195103 CDS YP_697275.1 110799787 4202653 complement(3184958..3185746) 1 NC_008261.1 identified by similarity to PIR:G97319; hypothetical protein 3185746 4202653 CPF_2911 Clostridium perfringens ATCC 13124 hypothetical protein YP_697275.1 3184958 R 195103 CDS YP_697276.1 110800993 4201668 3185879..3186466 1 NC_008261.1 identified by match to protein family HMM PF00132; maltose transacetylase 3186466 maa 4201668 maa Clostridium perfringens ATCC 13124 maltose transacetylase YP_697276.1 3185879 D 195103 CDS YP_697277.1 110799629 4201503 3186518..3186991 1 NC_008261.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 3186991 msrA 4201503 msrA Clostridium perfringens ATCC 13124 methionine sulfoxide reductase A YP_697277.1 3186518 D 195103 CDS YP_697278.1 110798617 4202744 complement(3186993..3188477) 1 NC_008261.1 identified by match to protein family HMM PF02384; N-6 DNA methylase 3188477 4202744 CPF_2914 Clostridium perfringens ATCC 13124 N-6 DNA methylase YP_697278.1 3186993 R 195103 CDS YP_697279.1 110801296 4201897 complement(3188606..3190762) 1 NC_008261.1 identified by similarity to SP:P49022; phage infection protein 3190762 4201897 CPF_2915 Clostridium perfringens ATCC 13124 phage infection protein YP_697279.1 3188606 R 195103 CDS YP_697280.1 110800651 4202009 complement(3190785..3192950) 1 NC_008261.1 identified by similarity to SP:P49022; phage infection protein 3192950 4202009 CPF_2916 Clostridium perfringens ATCC 13124 phage infection protein YP_697280.1 3190785 R 195103 CDS YP_697281.1 110800666 4201710 complement(3193302..3193640) 1 NC_008261.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; phnA family protein 3193640 4201710 CPF_2917 Clostridium perfringens ATCC 13124 phnA family protein YP_697281.1 3193302 R 195103 CDS YP_697282.1 110799037 4201293 complement(3193854..3194660) 1 NC_008261.1 hypothetical protein 3194660 4201293 CPF_2918 Clostridium perfringens ATCC 13124 hypothetical protein YP_697282.1 3193854 R 195103 CDS YP_697283.1 110801316 4201917 complement(3194797..3195828) 1 NC_008261.1 identified by similarity to GB:BAC60887.1; hypothetical protein 3195828 4201917 CPF_2919 Clostridium perfringens ATCC 13124 hypothetical protein YP_697283.1 3194797 R 195103 CDS YP_697284.1 110800680 4202523 complement(3195952..3197385) 1 NC_008261.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 3197385 4202523 CPF_2920 Clostridium perfringens ATCC 13124 potassium/proton antiporter YP_697284.1 3195952 R 195103 CDS YP_697285.1 110800102 4202407 complement(3197638..3198006) 1 NC_008261.1 identified by similarity to PIR:H97140; hypothetical protein 3198006 4202407 CPF_2921 Clostridium perfringens ATCC 13124 hypothetical protein YP_697285.1 3197638 R 195103 CDS YP_697286.1 110798715 4201321 3198543..3198941 1 NC_008261.1 identified by similarity to GB:AAS40903.1; hypothetical protein 3198941 4201321 CPF_2922 Clostridium perfringens ATCC 13124 hypothetical protein YP_697286.1 3198543 D 195103 CDS YP_697287.1 110800975 4202294 complement(3199025..3201265) 1 NC_008261.1 identified by match to protein family HMM TIGR01167; cell wall surface anchor family protein 3201265 4202294 CPF_2923 Clostridium perfringens ATCC 13124 cell wall surface anchor family protein YP_697287.1 3199025 R 195103 CDS YP_697288.1 110800279 4203619 complement(3201509..3201646) 1 NC_008261.1 hypothetical protein 3201646 4203619 CPF_2924 Clostridium perfringens ATCC 13124 hypothetical protein YP_697288.1 3201509 R 195103 CDS YP_697289.1 110799697 4203381 3201879..3202769 1 NC_008261.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase 3202769 4203381 CPF_2925 Clostridium perfringens ATCC 13124 short chain dehydrogenase/reductase oxidoreductase YP_697289.1 3201879 D 195103 CDS YP_697290.2 261876146 4201010 complement(3202927..3203085) 1 NC_008261.1 identified by similarity to PIR:A96978; hypothetical protein 3203085 4201010 CPF_2926 Clostridium perfringens ATCC 13124 hypothetical protein YP_697290.2 3202927 R 195103 CDS YP_697291.1 110798803 4201779 complement(3203450..3203929) 1 NC_008261.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3203929 4201779 CPF_2927 Clostridium perfringens ATCC 13124 rRNA large subunit methyltransferase YP_697291.1 3203450 R 195103 CDS YP_697292.1 110800076 4202440 complement(3204175..3204546) 1 NC_008261.1 identified by similarity to GB:AAO75282.1; hypothetical protein 3204546 4202440 CPF_2928 Clostridium perfringens ATCC 13124 hypothetical protein YP_697292.1 3204175 R 195103 CDS YP_697293.1 110798950 4202181 complement(3204776..3205417) 1 NC_008261.1 identified by similarity to PIR:C97100; match to protein family HMM PF06555; hypothetical protein 3205417 4202181 CPF_2929 Clostridium perfringens ATCC 13124 hypothetical protein YP_697293.1 3204776 R 195103 CDS YP_697294.1 110799890 4203906 complement(3205524..3206024) 1 NC_008261.1 identified by match to protein family HMM PF02810; hypothetical protein 3206024 4203906 CPF_2930 Clostridium perfringens ATCC 13124 hypothetical protein YP_697294.1 3205524 R 195103 CDS YP_697295.1 110800177 4203671 complement(3206168..3206722) 1 NC_008261.1 lipoprotein 3206722 4203671 CPF_2931 Clostridium perfringens ATCC 13124 lipoprotein YP_697295.1 3206168 R 195103 CDS YP_697296.1 110801158 4201018 complement(3206738..3207529) 1 NC_008261.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 3207529 4201018 CPF_2932 Clostridium perfringens ATCC 13124 metallo-beta-lactamase YP_697296.1 3206738 R 195103 CDS YP_697297.1 110798603 4201248 complement(3207552..3208805) 1 NC_008261.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3208805 murA 4201248 murA Clostridium perfringens ATCC 13124 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_697297.1 3207552 R 195103 CDS YP_697298.1 110800192 4202969 3209145..3209690 1 NC_008261.1 identified by similarity to GB:AAO34821.1; hypothetical protein 3209690 4202969 CPF_2934 Clostridium perfringens ATCC 13124 hypothetical protein YP_697298.1 3209145 D 195103 CDS YP_697299.1 110801321 4201922 3209885..3210364 1 NC_008261.1 identified by similarity to GB:AAO34793.1; hypothetical protein 3210364 4201922 CPF_2935 Clostridium perfringens ATCC 13124 hypothetical protein YP_697299.1 3209885 D 195103 CDS YP_697300.1 110799702 4203386 3210420..3210851 1 NC_008261.1 identified by match to protein family HMM PF04657; hypothetical protein 3210851 4203386 CPF_2936 Clostridium perfringens ATCC 13124 hypothetical protein YP_697300.1 3210420 D 195103 CDS YP_697301.1 110800982 4202301 3210918..3212114 1 NC_008261.1 identified by match to protein family HMM PF00082; subtilase 3212114 4202301 CPF_2937 Clostridium perfringens ATCC 13124 subtilase YP_697301.1 3210918 D 195103 CDS YP_697302.1 110798888 4203423 complement(3212117..3213169) 1 NC_008261.1 identified by match to protein family HMM PF01551; match to protein family HMM PF07501; M24/M37 family peptidase 3213169 4203423 CPF_2938 Clostridium perfringens ATCC 13124 M24/M37 family peptidase YP_697302.1 3212117 R 195103 CDS YP_697303.1 110799484 4202328 3213399..3214400 1 NC_008261.1 identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 3214400 4202328 CPF_2939 Clostridium perfringens ATCC 13124 DNA replication protein DnaD YP_697303.1 3213399 D 195103 CDS YP_697304.1 110800140 4203537 3214397..3215392 1 NC_008261.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3215392 4203537 CPF_2940 Clostridium perfringens ATCC 13124 DNA replication protein DnaC YP_697304.1 3214397 D 195103 CDS YP_697305.1 110798881 4203416 complement(3216512..3217081) 1 NC_008261.1 hypothetical protein 3217081 4203416 CPF_2951 Clostridium perfringens ATCC 13124 hypothetical protein YP_697305.1 3216512 R 195103 CDS YP_697306.1 110799467 4201337 3217277..3218524 1 NC_008261.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; hypothetical protein 3218524 4201337 CPF_2952 Clostridium perfringens ATCC 13124 hypothetical protein YP_697306.1 3217277 D 195103 CDS YP_697307.1 110799880 4203002 complement(3218641..3219399) 1 NC_008261.1 identified by match to protein family HMM PF01643; acyl-ACP thioesterase 3219399 4203002 CPF_2953 Clostridium perfringens ATCC 13124 acyl-ACP thioesterase YP_697307.1 3218641 R 195103 CDS YP_697308.1 110798836 4202495 complement(3219422..3220162) 1 NC_008261.1 identified by match to protein family HMM PF01643; acyl-ACP thioesterase 3220162 4202495 CPF_2954 Clostridium perfringens ATCC 13124 acyl-ACP thioesterase YP_697308.1 3219422 R 195103 CDS YP_697309.1 110800044 4203712 complement(3220295..3220837) 1 NC_008261.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 3220837 4203712 CPF_2955 Clostridium perfringens ATCC 13124 rubredoxin/rubrerythrin YP_697309.1 3220295 R 195103 CDS YP_697310.1 110799498 4202051 complement(3221152..3221343) 1 NC_008261.1 hypothetical protein 3221343 4202051 CPF_2956 Clostridium perfringens ATCC 13124 hypothetical protein YP_697310.1 3221152 R 195103 CDS YP_697311.1 110799904 4203198 complement(3221453..3221932) 1 NC_008261.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 3221932 4203198 CPF_2957 Clostridium perfringens ATCC 13124 MutT/nudix family protein YP_697311.1 3221453 R 195103 CDS YP_697312.1 110799195 4202387 complement(3222060..3223346) 1 NC_008261.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3223346 purA 4202387 purA Clostridium perfringens ATCC 13124 adenylosuccinate synthetase YP_697312.1 3222060 R 195103 CDS YP_697313.1 110800656 4201700 3223827..3224507 1 NC_008261.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 3224507 sdhB 4201700 sdhB Clostridium perfringens ATCC 13124 L-serine dehydratase, iron-sulfur-dependent subunit beta YP_697313.1 3223827 D 195103 CDS YP_697314.1 110799878 4203000 3224508..3225389 1 NC_008261.1 identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 3225389 sdhA 4203000 sdhA Clostridium perfringens ATCC 13124 L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_697314.1 3224508 D 195103 CDS YP_697315.1 110801079 4201753 3225625..3226797 1 NC_008261.1 identified by match to protein family HMM PF01380; sugar isomerase 3226797 4201753 CPF_2961 Clostridium perfringens ATCC 13124 sugar isomerase YP_697315.1 3225625 D 195103 CDS YP_697316.1 110799569 4203504 3226817..3227674 1 NC_008261.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3227674 gatY 4203504 gatY Clostridium perfringens ATCC 13124 tagatose-bisphosphate aldolase YP_697316.1 3226817 D 195103 CDS YP_697317.1 110799512 4202065 complement(3227731..3228456) 1 NC_008261.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3228456 4202065 CPF_2963 Clostridium perfringens ATCC 13124 GntR family transcriptional regulator YP_697317.1 3227731 R 195103 CDS YP_697318.1 110800130 4203897 complement(3228593..3228856) 1 NC_008261.1 preprotein translocase subunit 3228856 4203897 CPF_2964 Clostridium perfringens ATCC 13124 preprotein translocase subunit YP_697318.1 3228593 R 195103 CDS YP_697319.1 110800824 4201094 complement(3228873..3229277) 1 NC_008261.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 3229277 4201094 CPF_2965 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIA YP_697319.1 3228873 R 195103 CDS YP_697320.1 110799459 4201329 complement(3229450..3230256) 1 NC_008261.1 identified by similarity to SP:P08188; match to protein family HMM PF03613; PTS system transporter subunit IID 3230256 4201329 CPF_2966 Clostridium perfringens ATCC 13124 PTS system transporter subunit IID YP_697320.1 3229450 R 195103 CDS YP_697321.1 110800370 4201979 complement(3230256..3231047) 1 NC_008261.1 identified by similarity to SP:P08187; match to protein family HMM PF03609; PTS system transporter subunit IIC 3231047 4201979 CPF_2967 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIC YP_697321.1 3230256 R 195103 CDS YP_697322.1 110798983 4201106 complement(3231094..3231582) 1 NC_008261.1 identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 3231582 4201106 CPF_2968 Clostridium perfringens ATCC 13124 PTS system transporter subunit IIB YP_697322.1 3231094 R 195103 CDS YP_697323.1 110799777 4203520 complement(3231860..3232660) 1 NC_008261.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3232660 proC 4203520 proC Clostridium perfringens ATCC 13124 pyrroline-5-carboxylate reductase YP_697323.1 3231860 R 195103 CDS YP_697324.1 110799742 4203173 complement(3232838..3234172) 1 NC_008261.1 unwinds double stranded DNA; replicative DNA helicase 3234172 dnaB 4203173 dnaB Clostridium perfringens ATCC 13124 replicative DNA helicase YP_697324.1 3232838 R 195103 CDS YP_697325.1 110800560 4201430 complement(3234588..3236447) 1 NC_008261.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903; ATP-dependent protease 3236447 4201430 CPF_2971 Clostridium perfringens ATCC 13124 ATP-dependent protease YP_697325.1 3234588 R 195103 CDS YP_697326.1 110800780 4201766 complement(3236502..3236948) 1 NC_008261.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3236948 rplI 4201766 rplI Clostridium perfringens ATCC 13124 50S ribosomal protein L9 YP_697326.1 3236502 R 195103 CDS YP_697327.1 110799568 4203503 complement(3236950..3238908) 1 NC_008261.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 3238908 4203503 CPF_2973 Clostridium perfringens ATCC 13124 DHH family protein YP_697327.1 3236950 R 195103 CDS YP_697328.1 110799405 4201159 complement(3238941..3239936) 1 NC_008261.1 hypothetical protein 3239936 4201159 CPF_2974 Clostridium perfringens ATCC 13124 hypothetical protein YP_697328.1 3238941 R 195103 CDS YP_697329.1 110799151 4202832 complement(3239954..3240271) 1 NC_008261.1 identified by similarity to PIR:E97356; hypothetical protein 3240271 4202832 CPF_2975 Clostridium perfringens ATCC 13124 hypothetical protein YP_697329.1 3239954 R 195103 CDS YP_697330.1 110801194 4203115 complement(3240554..3240796) 1 NC_008261.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3240796 rpsR 4203115 rpsR Clostridium perfringens ATCC 13124 30S ribosomal protein S18 YP_697330.1 3240554 R 195103 CDS YP_697331.1 110800412 4202041 complement(3240827..3241279) 1 NC_008261.1 identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 3241279 ssb 4202041 ssb Clostridium perfringens ATCC 13124 single-strand binding protein YP_697331.1 3240827 R 195103 CDS YP_697332.1 110799639 4202504 complement(3241293..3241580) 1 NC_008261.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3241580 rpsF 4202504 rpsF Clostridium perfringens ATCC 13124 30S ribosomal protein S6 YP_697332.1 3241293 R 195103 CDS YP_697333.1 110801225 4203302 complement(3241724..3241936) 1 NC_008261.1 identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107; hypothetical protein 3241936 4203302 CPF_2979 Clostridium perfringens ATCC 13124 hypothetical protein YP_697333.1 3241724 R 195103 CDS YP_697334.1 110800748 4201425 complement(3241973..3242833) 1 NC_008261.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 3242833 4201425 CPF_2980 Clostridium perfringens ATCC 13124 mechanosensitive ion channel family protein YP_697334.1 3241973 R 195103 CDS YP_697335.1 110800072 4203779 complement(3242866..3243099) 1 NC_008261.1 identified by similarity to GB:AAM24878.1; hypothetical protein 3243099 4203779 CPF_2981 Clostridium perfringens ATCC 13124 hypothetical protein YP_697335.1 3242866 R 195103 CDS YP_697336.1 110800112 4202417 3243259..3243906 1 NC_008261.1 identified by match to protein family HMM PF01810; LysE family translocator protein 3243906 4202417 CPF_2982 Clostridium perfringens ATCC 13124 LysE family translocator protein YP_697336.1 3243259 D 195103 CDS YP_697337.1 110800660 4201704 3243918..3245078 1 NC_008261.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977; cysteine desulfurase 3245078 4201704 CPF_2983 Clostridium perfringens ATCC 13124 cysteine desulfurase YP_697337.1 3243918 D 195103 CDS YP_697338.1 110800933 4202116 3245090..3246154 1 NC_008261.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872; sporulation integral membrane protein YtvI 3246154 ytvI 4202116 ytvI Clostridium perfringens ATCC 13124 sporulation integral membrane protein YtvI YP_697338.1 3245090 D 195103 CDS YP_697339.1 110800289 4202872 3246204..3246794 1 NC_008261.1 identified by similarity to GB:AAO34757.1; match to protein family HMM PF06866; match to protein family HMM TIGR02841; sporulation protein YyaC 3246794 yyaC 4202872 yyaC Clostridium perfringens ATCC 13124 sporulation protein YyaC YP_697339.1 3246204 D 195103 CDS YP_697340.1 110798738 4202435 complement(3246944..3247441) 1 NC_008261.1 identified by similarity to GB:AAO34756.1; hypothetical protein 3247441 4202435 CPF_2986 Clostridium perfringens ATCC 13124 hypothetical protein YP_697340.1 3246944 R 195103 CDS YP_697341.1 110799346 4203084 complement(3247490..3248350) 1 NC_008261.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 3248350 4203084 CPF_2987 Clostridium perfringens ATCC 13124 stage 0 sporulation protein J YP_697341.1 3247490 R 195103 CDS YP_697342.1 110798938 4202169 complement(3248351..3249124) 1 NC_008261.1 identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj 3249124 soj 4202169 soj Clostridium perfringens ATCC 13124 sporulation initiation inhibitor protein soj YP_697342.1 3248351 R 195103 CDS YP_697343.1 110799944 4203784 complement(3249374..3250093) 1 NC_008261.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3250093 gidB 4203784 gidB Clostridium perfringens ATCC 13124 16S rRNA methyltransferase GidB YP_697343.1 3249374 R 195103 CDS YP_697344.1 110800451 4202371 complement(3250112..3250240) 1 NC_008261.1 hypothetical protein 3250240 4202371 CPF_2990 Clostridium perfringens ATCC 13124 hypothetical protein YP_697344.1 3250112 R 195103 CDS YP_697345.1 110801428 4203024 complement(3250270..3252162) 1 NC_008261.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3252162 gidA 4203024 gidA Clostridium perfringens ATCC 13124 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_697345.1 3250270 R 195103 CDS YP_697346.1 110799764 4203662 complement(3252177..3253553) 1 NC_008261.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3253553 trmE 4203662 trmE Clostridium perfringens ATCC 13124 tRNA modification GTPase TrmE YP_697346.1 3252177 R 195103 CDS YP_697347.1 110800203 4202980 complement(3253895..3254518) 1 NC_008261.1 identified by similarity to SP:Q01620; match to protein family HMM PF01424; R3H domain-containing protein 3254518 4202980 CPF_2993 Clostridium perfringens ATCC 13124 R3H domain-containing protein YP_697347.1 3253895 R 195103 CDS YP_697348.1 110801038 4201950 complement(3254560..3255276) 1 NC_008261.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3255276 oxaA 4201950 oxaA Clostridium perfringens ATCC 13124 inner membrane protein translocase component YidC YP_697348.1 3254560 R 195103 CDS YP_697349.1 110799979 4201249 complement(3255310..3255519) 1 NC_008261.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 3255519 4201249 CPF_2995 Clostridium perfringens ATCC 13124 hypothetical protein YP_697349.1 3255310 R 195103 CDS YP_697350.1 110799284 4202614 complement(3255491..3255868) 1 NC_008261.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3255868 rnpA 4202614 rnpA Clostridium perfringens ATCC 13124 ribonuclease P YP_697350.1 3255491 R 195103 CDS YP_697351.1 110801414 4203010 complement(3255929..3256063) 1 NC_008261.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3256063 rpmH 4203010 rpmH Clostridium perfringens ATCC 13124 50S ribosomal protein L34 YP_697351.1 3255929 R 195103 CDS