-- dump date   	20140619_044931
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_694476.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_694477.1	binds the polymerase to DNA and acts as a sliding clamp
YP_694478.1	identified by match to protein family HMM PF01479
YP_694479.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_694480.1	identified by similarity to PIR:T46554
YP_694481.1	negatively supercoils closed circular double-stranded DNA
YP_694482.1	negatively supercoils closed circular double-stranded DNA
YP_694483.1	identified by similarity to GB:AAO34741.1
YP_694484.1	identified by match to protein family HMM PF03699
YP_694485.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_694486.1	identified by similarity to PIR:E96901
YP_694487.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_694491.1	identified by similarity to GB:AAO36323.1
YP_694493.1	identified by similarity to SP:P23477; match to protein family HMM TIGR02773
YP_694494.1	identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR02785
YP_694495.1	identified by match to protein family HMM PF01743
YP_694496.1	identified by similarity to SP:O07521; match to protein family HMM PF01336; match to protein family HMM PF01966
YP_694497.1	identified by match to protein family HMM PF03734
YP_694498.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_694499.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_694501.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_694502.1	identified by match to protein family HMM PF00440
YP_694503.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_694504.1	identified by match to protein family HMM PF00383
YP_694506.1	identified by similarity to GB:AAO79590.1
YP_694507.1	identified by similarity to GB:AAO35771.1
YP_694508.1	identified by similarity to GB:AAS42428.1; match to protein family HMM PF02696
YP_694509.1	identified by similarity to SP:P15310; match to protein family HMM PF00882
YP_694510.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_694511.1	identified by similarity to GB:AAO35532.1
YP_694512.2	identified by match to protein family HMM PF03773
YP_694513.1	identified by similarity to PIR:C97096
YP_694514.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_694516.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_694517.1	identified by similarity to SP:P11045; match to protein family HMM PF00186
YP_694518.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_694519.1	identified by similarity to SP:Q97MR5; match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_694520.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_694521.1	identified by similarity to GB:AAM23356.1
YP_694522.1	identified by similarity to GB:BAB79755.1; match to protein family HMM TIGR02862
YP_694526.1	identified by match to protein family HMM PF00266
YP_694527.1	identified by similarity to SP:P35136; match to protein family HMM PF00389; match to protein family HMM PF02826
YP_694528.1	identified by similarity to PIR:H96901; match to protein family HMM PF06245
YP_694529.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_694530.1	identified by match to protein family HMM PF00899
YP_694531.1	identified by match to protein family HMM PF07690
YP_694532.1	identified by similarity to SP:P09454; match to protein family HMM PF00583
YP_694533.1	identified by similarity to SP:Q59484; match to protein family HMM PF01712
YP_694534.1	identified by similarity to SP:P15401; match to protein family HMM PF00874; match to protein family HMM PF03123
YP_694535.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_694536.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_694537.1	identified by match to protein family HMM PF00440
YP_694538.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_694539.1	identified by similarity to PIR:G97292
YP_694540.1	identified by similarity to SP:P54495; match to protein family HMM PF00480
YP_694541.1	identified by match to protein family HMM PF00301; match to protein family HMM PF02915
YP_694542.1	identified by match to protein family HMM PF00300
YP_694543.1	identified by similarity to SP:P46337; match to protein family HMM PF00455; match to protein family HMM PF08220
YP_694544.1	identified by match to protein family HMM PF00465
YP_694545.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_694546.1	identified by similarity to SP:P42414; match to protein family HMM PF00294
YP_694547.1	identified by similarity to SP:P42413; match to protein family HMM PF06845
YP_694548.1	identified by similarity to SP:P42415; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_694549.1	identified by similarity to GB:AAC70005.1; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_694550.1	identified by similarity to SP:P42416; match to protein family HMM PF01261
YP_694551.1	uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function
YP_694552.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_694553.1	identified by match to protein family HMM PF01226
YP_694554.1	identified by similarity to SP:P52046; match to protein family HMM PF00378
YP_694555.1	identified by similarity to GB:CAB77207.1; match to protein family HMM PF01144
YP_694556.1	identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_694557.1	identified by similarity to PIR:D75566
YP_694558.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_694559.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_694560.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_694562.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_694565.1	identified by match to protein family HMM PF06161
YP_694566.1	identified by match to protein family HMM PF06161
YP_694567.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_694570.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_694571.1	identified by similarity to GB:CAC39225.1
YP_694572.1	identified by similarity to PIR:D97239; match to protein family HMM PF06207
YP_694573.1	identified by similarity to GB:BAC14097.1; match to protein family HMM PF07872
YP_694574.1	identified by similarity to GB:AAK76917.1
YP_694575.1	identified by similarity to SP:P36548; match to protein family HMM PF01520
YP_694577.1	identified by similarity to PIR:F97297
YP_694578.1	identified by similarity to PIR:C97028
YP_694579.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_694580.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_694582.1	identified by match to protein family HMM PF00005
YP_694583.1	identified by match to protein family HMM PF02687
YP_694585.1	identified by similarity to PIR:F69799
YP_694586.1	identified by match to protein family HMM PF05738
YP_694587.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_694588.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_694590.1	identified by match to protein family HMM PF03595
YP_694591.1	identified by match to protein family HMM PF03601
YP_694593.1	identified by match to protein family HMM PF00892
YP_694594.1	identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_694595.1	identified by match to protein family HMM PF02517
YP_694596.1	Selenoprotein; identified by match to protein family HMM PF01521
YP_694597.1	identified by match to protein family HMM PF02915
YP_694598.1	identified by similarity to GB:AAO34821.1
YP_694600.1	identified by match to protein family HMM PF00005
YP_694602.1	identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508
YP_694603.1	identified by similarity to SP:P23737; match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_694604.1	identified by similarity to SP:P25257
YP_694605.1	identified by similarity to GB:BAB62471.1
YP_694609.1	in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown
YP_694610.1	identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_694611.1	identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738
YP_694612.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_694613.1	identified by similarity to GB:AAO36679.1
YP_694616.1	identified by similarity to GB:BAC70304.1; match to protein family HMM TIGR02464
YP_694618.1	identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043
YP_694620.1	identified by similarity to SP:P19995; match to protein family HMM PF01289
YP_694622.1	identified by similarity to GB:CAD62162.1
YP_694623.1	identified by match to protein family HMM PF00324
YP_694624.1	identified by match to protein family HMM PF02449
YP_694625.1	catalyzes the degradation of arginine to citruline and ammonia
YP_694626.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_694627.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR00905
YP_694628.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_694629.1	identified by match to protein family HMM PF01316; match to protein family HMM PF02863
YP_694630.1	identified by similarity to SP:P43153; match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151
YP_694631.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_694632.1	identified by match to protein family HMM PF01209
YP_694633.1	identified by similarity to GB:AAF14695.1; match to protein family HMM PF01053
YP_694634.1	identified by similarity to SP:P37887; match to protein family HMM PF00291
YP_694635.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_694636.1	identified by similarity to GB:AAC45283.1; match to protein family HMM PF07859
YP_694637.1	identified by match to protein family HMM PF06182
YP_694638.1	identified by match to protein family HMM PF06182
YP_694639.1	identified by match to protein family HMM PF00005
YP_694640.1	identified by match to protein family HMM PF00881
YP_694641.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_694642.1	catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid
YP_694643.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813
YP_694644.1	identified by similarity to GB:CAG20668.1; match to protein family HMM PF04074; match to protein family HMM TIGR00022
YP_694645.1	identified by match to protein family HMM PF00480
YP_694646.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_694648.1	identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555
YP_694649.1	catalyzes the ATP-dependent transport of cobalt
YP_694650.1	periplasmic cobalt binding component of the cobalt transport system
YP_694651.1	identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454
YP_694652.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_694654.1	identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533
YP_694655.1	identified by match to protein family HMM PF01551
YP_694657.1	identified by similarity to GB:AAM23932.1
YP_694658.1	identified by similarity to PIR:G97348; match to protein family HMM PF02583
YP_694661.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_694662.1	identified by match to protein family HMM PF01757
YP_694663.1	identified by similarity to GB:AAO91513.1
YP_694667.1	identified by match to protein family HMM PF00924
YP_694668.1	identified by match to protein family HMM PF01126
YP_694669.1	identified by similarity to SP:P13457; match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_694670.1	identified by similarity to SP:P13458; match to protein family HMM PF02463
YP_694671.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_694672.1	identified by match to protein family HMM PF00165
YP_694673.1	identified by match to protein family HMM TIGR01167
YP_694675.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_694676.1	identified by match to protein family HMM PF01497
YP_694677.1	identified by match to protein family HMM PF01032
YP_694678.1	identified by match to protein family HMM PF00005
YP_694679.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694680.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694681.1	identified by similarity to GB:AAS11534.1; match to protein family HMM PF04304
YP_694682.1	identified by similarity to GB:AAO79602.1
YP_694683.1	identified by match to protein family HMM PF04324
YP_694684.1	can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase
YP_694685.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881
YP_694687.1	identified by similarity to GB:AAS44277.1
YP_694688.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_694689.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_694690.1	identified by match to protein family HMM PF00999
YP_694695.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_694699.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_694700.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_694701.1	identified by match to protein family HMM PF00226
YP_694703.1	identified by match to protein family HMM PF00012
YP_694705.1	identified by similarity to GB:AAC45230.1; match to protein family HMM PF02811
YP_694707.1	identified by similarity to GB:AAO34832.1
YP_694708.1	identified by similarity to GB:AAS44038.1
YP_694709.1	identified by similarity to GB:AAP11869.1; match to protein family HMM PF07875
YP_694710.1	identified by similarity to GB:AAM06508.1
YP_694711.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_694712.1	identified by similarity to GB:AAQ66620.1; match to protein family HMM PF04313
YP_694713.1	identified by similarity to SP:P07464; match to protein family HMM PF00132
YP_694714.1	identified by match to protein family HMM PF02559
YP_694715.1	identified by match to protein family HMM PF00924
YP_694716.1	identified by match to protein family HMM PF03932
YP_694718.1	identified by match to protein family HMM PF07613
YP_694720.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_694721.1	identified by similarity to GB:BAA32403.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM TIGR01167
YP_694722.1	identified by match to protein family HMM PF00578
YP_694723.1	identified by match to protein family HMM PF00639
YP_694724.1	identified by match to protein family HMM PF01061
YP_694725.1	identified by match to protein family HMM PF00005
YP_694726.1	identified by match to protein family HMM PF00534
YP_694727.1	identified by match to protein family HMM PF00534
YP_694728.1	identified by match to protein family HMM PF00005
YP_694729.1	identified by match to protein family HMM PF00534
YP_694730.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_694731.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_694734.1	identified by similarity to GB:AAF86217.1; match to protein family HMM PF00877
YP_694735.1	identified by similarity to GB:AAM23407.1; match to protein family HMM PF05175
YP_694736.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_694737.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_694738.1	identified by similarity to GB:AAK78295.1
YP_694739.1	identified by match to protein family HMM PF01263
YP_694740.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_694741.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_694742.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_694743.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_694744.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_694745.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167
YP_694746.1	identified by similarity to PIR:A96960
YP_694747.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_694748.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_694749.1	identified by similarity to PIR:D96960
YP_694750.1	identified by similarity to GB:AAM25326.1
YP_694751.1	identified by match to protein family HMM PF02452
YP_694752.1	identified by similarity to SP:Q58094; match to protein family HMM PF00456
YP_694753.1	identified by similarity to SP:Q58092; match to protein family HMM PF02779; match to protein family HMM PF02780
YP_694755.1	identified by match to protein family HMM PF02588
YP_694756.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673
YP_694757.1	identified by similarity to SP:O34876; match to protein family HMM PF02687
YP_694758.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_694760.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_694761.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_694762.1	identified by match to protein family HMM PF00005
YP_694763.1	identified by similarity to GB:AAP10268.1
YP_694764.1	identified by similarity to GB:AAL47055.1
YP_694765.1	identified by match to protein family HMM PF00488
YP_694766.2	identified by match to protein family HMM PF07729
YP_694767.2	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_694768.1	identified by match to protein family HMM PF01012
YP_694769.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_694770.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_694771.1	identified by similarity to GB:AAO75282.1
YP_694772.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_694774.1	identified by similarity to GB:AAS41741.1
YP_694775.1	identified by match to protein family HMM PF06161
YP_694777.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_694778.1	identified by similarity to GB:BAD77164.1; match to protein family HMM PF01987; match to protein family HMM TIGR00266
YP_694779.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_694780.1	identified by match to protein family HMM PF00892
YP_694781.1	identified by match to protein family HMM PF00324
YP_694782.1	identified by match to protein family HMM PF04087
YP_694783.1	identified by match to protein family HMM PF01523
YP_694784.1	identified by match to protein family HMM PF01523
YP_694785.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_694786.1	identified by similarity to SP:P19220; match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_694787.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_694789.1	identified by match to protein family HMM PF02274
YP_694790.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_694791.1	identified by similarity to SP:P32184; match to protein family HMM PF00376; match to protein family HMM PF07739
YP_694792.1	identified by similarity to GB:AAM24863.1
YP_694793.1	identified by similarity to GB:AAM24861.1
YP_694796.1	identified by match to protein family HMM PF00027
YP_694797.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_694798.1	identified by match to protein family HMM PF00498
YP_694799.1	identified by match to protein family HMM PF01098
YP_694800.1	identified by match to protein family HMM PF00905
YP_694801.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_694802.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_694803.1	identified by similarity to GB:AAO36958.1; match to protein family HMM PF03668
YP_694804.1	identified by similarity to PIR:B96963; match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_694806.1	identified by similarity to GB:AAP09652.1
YP_694807.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_694808.1	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_694809.1	identified by match to protein family HMM PF07561
YP_694810.1	identified by match to protein family HMM PF00106
YP_694811.1	identified by similarity to SP:O66043; match to protein family HMM PF00614
YP_694812.1	identified by similarity to PIR:F97334; match to protein family HMM PF07561
YP_694813.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_694814.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_694816.1	identified by similarity to GB:AAB85057.1
YP_694818.1	identified by match to protein family HMM PF01555
YP_694819.1	identified by match to protein family HMM PF04851
YP_694821.2	identified by match to protein family HMM PF00440
YP_694822.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_694823.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694824.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694825.1	identified by match to protein family HMM PF02915
YP_694826.1	identified by match to protein family HMM PF01183
YP_694827.1	identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593
YP_694828.1	FAD/NAD(P)-binding domain
YP_694829.1	identified by match to protein family HMM PF01522
YP_694830.1	identified by match to protein family HMM PF00106
YP_694831.1	identified by match to protein family HMM PF00392
YP_694832.1	identified by similarity to SP:P12758; match to protein family HMM PF01048; match to protein family HMM TIGR01718
YP_694833.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_694834.1	identified by match to protein family HMM PF00324; match to protein family HMM PF01490
YP_694835.1	identified by match to protein family HMM PF02329; match to protein family HMM TIGR00541
YP_694836.1	identified by match to protein family HMM PF00149
YP_694838.1	identified by similarity to SP:P23523; match to protein family HMM PF03446
YP_694839.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_694840.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_694841.1	identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078
YP_694842.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_694843.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_694844.1	identified by similarity to SP:P31215; match to protein family HMM PF04973; match to protein family HMM TIGR01528
YP_694845.1	identified by match to protein family HMM PF00027
YP_694848.1	identified by similarity to GB:AAO35738.1
YP_694849.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_694850.1	identified by match to protein family HMM PF02588
YP_694851.1	identified by match to protein family HMM PF00746; match to protein family HMM PF02278; match to protein family HMM PF08124; match to protein family HMM TIGR01167
YP_694852.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_694853.1	Involved in the metabolism of 2-deoxyglucose
YP_694854.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_694855.1	identified by match to protein family HMM PF00294
YP_694856.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_694857.1	identified by similarity to GB:BAA84216.1; match to protein family HMM PF07470
YP_694858.1	identified by match to protein family HMM PF03830
YP_694859.1	identified by match to protein family HMM PF03609
YP_694860.1	identified by match to protein family HMM PF03613
YP_694861.1	identified by match to protein family HMM PF03610
YP_694862.1	identified by match to protein family HMM PF02699
YP_694863.1	identified by match to protein family HMM PF07940
YP_694864.1	identified by match to protein family HMM PF00532
YP_694865.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_694866.1	identified by similarity to GB:AAO80898.1
YP_694867.1	identified by similarity to GB:AAM24960.1; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_694868.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_694869.1	identified by similarity to GB:AAO36901.1; match to protein family HMM PF07992
YP_694870.1	identified by similarity to GB:AAK47746.1
YP_694871.1	identified by match to protein family HMM PF00484
YP_694872.1	identified by similarity to GB:AAN58407.1; match to protein family HMM PF06541
YP_694873.1	identified by similarity to GB:AAO36906.1
YP_694874.1	molecular chaperone
YP_694875.1	identified by similarity to GB:AAK81170.1
YP_694876.1	identified by similarity to GB:AAK56814.1
YP_694877.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_694878.1	identified by similarity to SP:P29094; match to protein family HMM PF00128
YP_694879.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003
YP_694880.1	identified by match to protein family HMM PF03372
YP_694881.1	identified by similarity to SP:P37965; match to protein family HMM PF03009
YP_694882.1	identified by similarity to SP:P46907; match to protein family HMM PF07690
YP_694883.1	identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573
YP_694884.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_694885.1	identified by similarity to PIR:AG1527; match to protein family HMM PF06824
YP_694889.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_694890.1	identified by similarity to GB:AAP09437.1
YP_694891.1	identified by match to protein family HMM PF00561
YP_694892.1	identified by match to protein family HMM PF07656
YP_694893.1	identified by match to protein family HMM PF00583
YP_694894.1	identified by similarity to PIR:G97099
YP_694895.1	identified by similarity to GB:AAT04397.1
YP_694896.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_694897.1	identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547
YP_694898.1	identified by similarity to SP:P71338; match to protein family HMM PF00528
YP_694899.1	identified by similarity to GB:AAL94516.1; match to protein family HMM PF00005
YP_694900.1	identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_694901.1	identified by match to protein family HMM PF04324
YP_694902.1	identified by match to protein family HMM PF00392
YP_694903.1	identified by match to protein family HMM PF00005
YP_694904.1	identified by similarity to GB:AAP28153.1
YP_694905.1	identified by similarity to GB:AAS12417.1
YP_694906.1	identified by match to protein family HMM PF00903
YP_694907.1	identified by match to protein family HMM PF00165
YP_694908.1	identified by match to protein family HMM PF00465
YP_694909.1	identified by similarity to GB:AAO35553.1
YP_694910.1	identified by similarity to GB:AAP24625.1; match to protein family HMM PF00903
YP_694911.1	identified by similarity to GB:AAS41916.1; match to protein family HMM PF06347
YP_694912.1	identified by similarity to SP:P39075; match to protein family HMM PF00376
YP_694915.1	identified by similarity to GB:AAL95465.1
YP_694916.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_694917.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_694920.1	identified by similarity to GB:BAB80172.1
YP_694921.1	identified by match to protein family HMM PF02706
YP_694923.1	identified by match to protein family HMM PF02397
YP_694924.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721
YP_694926.1	identified by similarity to GB:BAC93122.1; match to protein family HMM PF07940
YP_694927.1	identified by similarity to SP:P39860
YP_694928.1	identified by match to protein family HMM PF00534
YP_694929.1	identified by match to protein family HMM PF01943
YP_694932.1	identified by match to protein family HMM PF00534
YP_694933.1	identified by match to protein family HMM PF00534
YP_694934.1	identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_694935.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_694936.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_694937.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_694938.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_694939.1	identified by similarity to SP:P17869; match to protein family HMM TIGR02937
YP_694941.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_694942.1	identified by similarity to SP:Q05852; match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_694944.1	identified by match to protein family HMM PF01473
YP_694945.1	identified by similarity to GB:AAD23585.1; match to protein family HMM PF02065
YP_694946.1	identified by match to protein family HMM PF07170
YP_694947.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228
YP_694949.1	identified by similarity to GB:BAC14481.1; match to protein family HMM TIGR01167
YP_694950.1	identified by similarity to GB:BAB80221.1
YP_694951.1	identified by match to protein family HMM PF00092
YP_694952.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_694953.1	identified by match to protein family HMM PF02518
YP_694955.1	identified by match to protein family HMM PF00359
YP_694956.1	identified by match to protein family HMM PF02302
YP_694957.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_694958.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_694959.1	identified by match to protein family HMM PF01047
YP_694960.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694961.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_694963.1	identified by match to protein family HMM PF03547
YP_694964.1	identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826
YP_694965.1	identified by match to protein family HMM PF02518
YP_694966.1	identified by match to protein family HMM PF00072
YP_694970.1	identified by match to protein family HMM PF02659
YP_694972.1	identified by match to protein family HMM PF00465
YP_694974.1	identified by match to protein family HMM PF02080
YP_694975.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01978
YP_694976.1	identified by match to protein family HMM PF01594
YP_694977.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_694979.1	identified by similarity to GB:AAY61763.1
YP_694980.1	identified by similarity to GB:BAA06530.1; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_694981.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_694982.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711
YP_694983.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_694984.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_694985.1	identified by similarity to GB:BAB80258.1; match to protein family HMM PF06961
YP_694986.1	identified by similarity to SP:P29767; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF02012; match to protein family HMM PF02973
YP_694987.1	identified by similarity to GB:AAM32797.1
YP_694988.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_694989.1	identified by match to protein family HMM PF02525
YP_694991.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_694992.1	identified by match to protein family HMM PF00528; match to protein family HMM PF04069
YP_694993.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954
YP_694994.1	identified by similarity to GB:AAO35222.1
YP_694995.1	identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_694996.2	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403
YP_694997.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404
YP_694998.1	identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_694999.1	identified by similarity to SP:P00806; match to protein family HMM PF01510
YP_695000.2	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_695001.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_695002.1	identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506
YP_695003.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_695004.1	identified by match to protein family HMM PF01473
YP_695005.1	identified by similarity to GB:BAD76119.1; match to protein family HMM PF01894; match to protein family HMM TIGR00149
YP_695006.1	identified by similarity to PIR:F72407
YP_695007.1	identified by similarity to GB:AAN25428.1; match to protein family HMM TIGR02336
YP_695008.1	identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580
YP_695009.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_695010.1	identified by match to protein family HMM PF01547
YP_695011.1	identified by match to protein family HMM PF00528
YP_695012.1	identified by match to protein family HMM PF00528
YP_695014.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_695015.1	identified by match to protein family HMM PF01066
YP_695016.1	identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865
YP_695017.1	identified by match to protein family HMM PF01384
YP_695018.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_695019.1	identified by similarity to SP:O31714; match to protein family HMM PF00294
YP_695020.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_695022.1	identified by match to protein family HMM PF01594
YP_695023.1	identified by match to protein family HMM PF00857
YP_695024.1	identified by match to protein family HMM PF00654
YP_695025.1	identified by match to protein family HMM PF04960
YP_695026.1	identified by match to protein family HMM PF02308
YP_695027.1	Regulatory factor involved in maltose metabolism
YP_695028.1	identified by match to protein family HMM PF00293
YP_695029.1	identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_695031.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_695032.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_695033.1	identified by similarity to GB:BAA23380.1
YP_695034.1	identified by match to protein family HMM PF00497
YP_695035.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_695036.1	identified by match to protein family HMM PF00005
YP_695037.1	identified by match to protein family HMM PF00884
YP_695038.1	identified by match to protein family HMM PF00884
YP_695039.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_695040.1	identified by match to protein family HMM PF00018; match to protein family HMM PF01510; match to protein family HMM PF06347; match to protein family HMM PF07653
YP_695041.1	catalyzes the removal of amino acids from the N termini of peptides
YP_695042.1	identified by similarity to PIR:E96976
YP_695043.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_695044.1	identified by match to protein family HMM PF03176
YP_695045.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503
YP_695047.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_695048.1	identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397
YP_695049.1	identified by match to protein family HMM PF00535
YP_695050.1	identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_695051.1	identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_695052.1	identified by similarity to GB:BAA21509.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_695053.1	identified by similarity to SP:P55295; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_695055.1	identified by match to protein family HMM PF00535
YP_695056.1	identified by similarity to GB:BAA32000.1
YP_695057.1	identified by similarity to GB:AAK68914.1; match to protein family HMM PF01943
YP_695058.1	identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832
YP_695059.1	identified by match to protein family HMM PF00246; match to protein family HMM PF01473
YP_695060.1	identified by similarity to PIR:A41971; match to protein family HMM PF01473
YP_695061.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636
YP_695062.1	identified by match to protein family HMM PF00892
YP_695063.1	identified by match to protein family HMM PF00483
YP_695064.1	identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473
YP_695065.1	identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_695066.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_695067.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_695069.1	anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates
YP_695070.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_695071.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_695072.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_695073.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_695074.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_695075.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_695076.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695077.1	identified by similarity to PIR:C96972
YP_695078.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_695079.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_695080.1	identified by similarity to PIR:A96978
YP_695081.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_695082.1	identified by match to protein family HMM PF03323
YP_695083.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_695084.1	identified by match to protein family HMM PF04326
YP_695085.1	identified by similarity to PIR:D70143
YP_695086.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_695087.1	identified by match to protein family HMM PF00149
YP_695088.1	identified by match to protein family HMM PF04607
YP_695089.1	identified by similarity to GB:AAO35900.1
YP_695090.1	identified by similarity to PIR:C97129; match to protein family HMM PF07728
YP_695091.1	identified by similarity to GB:AAO35898.1
YP_695093.2	identified by similarity to SP:P44744
YP_695094.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055
YP_695095.1	identified by similarity to GB:AAO80924.1; match to protein family HMM PF00455; match to protein family HMM PF08220
YP_695096.1	identified by similarity to GB:AAL23202.1
YP_695097.1	identified by match to protein family HMM PF00359
YP_695098.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_695099.1	identified by similarity to SP:P39302; match to protein family HMM PF02302
YP_695100.1	identified by similarity to GB:AAN00670.1; match to protein family HMM PF01839
YP_695101.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_695102.1	L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate
YP_695103.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_695106.1	Selenoprotein; identified by match to protein family HMM TIGR01911
YP_695107.1	identified by match to protein family HMM TIGR01911
YP_695110.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_695111.1	identified by similarity to GB:BAC14641.1
YP_695114.1	identified by match to protein family HMM PF00654
YP_695115.1	identified by match to protein family HMM PF00293
YP_695117.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121
YP_695118.1	identified by match to protein family HMM PF00570
YP_695122.1	identified by match to protein family HMM PF00692
YP_695123.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_695124.1	identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857
YP_695125.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_695126.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_695127.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_695128.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_695129.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_695130.1	involved in de novo purine biosynthesis
YP_695131.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_695132.1	identified by similarity to GB:AAO82850.1; match to protein family HMM PF03733
YP_695133.1	identified by match to protein family HMM PF00301; match to protein family HMM PF02915
YP_695134.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_695135.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_695136.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_695137.1	identified by match to protein family HMM PF00041; match to protein family HMM PF02018; match to protein family HMM PF07532
YP_695139.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_695140.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_695141.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_695142.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_695143.1	identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805
YP_695145.1	identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507
YP_695146.1	identified by similarity to SP:P24167; match to protein family HMM PF01202
YP_695147.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_695148.1	identified by match to protein family HMM PF01638
YP_695149.1	identified by similarity to SP:P32382; match to protein family HMM PF00724
YP_695151.1	identified by match to protein family HMM PF03551
YP_695152.1	identified by similarity to GB:BAB80411.1
YP_695155.1	identified by match to protein family HMM PF00005
YP_695156.1	identified by similarity to GB:CAD65063.1
YP_695157.1	identified by similarity to SP:P54965; match to protein family HMM PF02275
YP_695158.1	identified by match to protein family HMM PF01037
YP_695159.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00266; match to protein family HMM PF01212
YP_695162.1	identified by match to protein family HMM PF06925
YP_695163.1	identified by match to protein family HMM PF00583
YP_695164.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_695165.1	identified by similarity to GB:AAO36314.1
YP_695166.1	identified by match to protein family HMM PF02272; match to protein family HMM PF07973
YP_695167.1	identified by match to protein family HMM PF00535
YP_695168.1	identified by match to protein family HMM PF01594
YP_695169.1	identified by match to protein family HMM PF02535
YP_695170.2	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_695171.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_695172.1	identified by similarity to SP:P37956; match to protein family HMM PF04055; match to protein family HMM TIGR00620
YP_695173.1	identified by similarity to SP:Q54727; match to protein family HMM PF02012; match to protein family HMM PF02973
YP_695175.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_695176.1	identified by match to protein family HMM PF00583
YP_695178.1	identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290
YP_695179.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_695180.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_695181.1	identified by match to protein family HMM PF04143
YP_695182.1	identified by match to protein family HMM PF00324
YP_695183.1	identified by match to protein family HMM PF00480
YP_695184.1	identified by similarity to SP:Q06004; match to protein family HMM PF00107
YP_695185.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792
YP_695186.1	identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294
YP_695187.1	identified by similarity to GB:CAC69846.1; match to protein family HMM PF07299
YP_695188.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_695189.1	identified by match to protein family HMM PF01638
YP_695190.1	identified by match to protein family HMM PF00085; match to protein family HMM PF02683
YP_695191.1	identified by match to protein family HMM PF07859
YP_695192.1	identified by match to protein family HMM PF02554
YP_695195.1	identified by similarity to GB:BAC12302.1
YP_695196.1	identified by match to protein family HMM PF00005
YP_695197.1	identified by match to protein family HMM PF02687
YP_695198.1	identified by similarity to PIR:F86818
YP_695199.1	identified by similarity to SP:O66043; match to protein family HMM PF00614
YP_695200.1	identified by match to protein family HMM PF00293
YP_695201.1	identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969
YP_695202.1	identified by similarity to GB:BAA25929.1; match to protein family HMM PF02633
YP_695203.1	identified by match to protein family HMM PF00892
YP_695204.1	identified by similarity to GB:AAS19481.1; match to protein family HMM PF07905
YP_695205.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_695207.1	identified by similarity to SP:P24943; match to protein family HMM PF00375
YP_695208.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_695210.1	identified by match to protein family HMM PF00583
YP_695211.1	identified by match to protein family HMM PF00376
YP_695212.1	identified by similarity to PIR:F96989
YP_695213.1	identified by similarity to PIR:A96978
YP_695214.1	identified by similarity to SP:P37501
YP_695215.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792
YP_695216.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_695217.1	identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929
YP_695218.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_695219.1	identified by match to protein family HMM PF03600
YP_695220.1	identified by match to protein family HMM PF00561
YP_695221.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_695222.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_695223.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_695224.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_695225.1	identified by match to protein family HMM PF00092; match to protein family HMM PF05738
YP_695226.1	identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043
YP_695227.1	identified by similarity to GB:AAO36389.1; match to protein family HMM PF01814; match to protein family HMM PF04282
YP_695228.1	identified by similarity to GB:AAB81287.1; match to protein family HMM PF01814; match to protein family HMM PF04405
YP_695229.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_695230.1	identified by match to protein family HMM PF00301
YP_695231.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_695232.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_695233.1	identified by similarity to SP:P00268; match to protein family HMM PF00301
YP_695234.1	identified by match to protein family HMM PF00753
YP_695235.1	identified by similarity to GB:AAD52147.1; match to protein family HMM PF00578
YP_695236.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992
YP_695239.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_695240.1	identified by match to protein family HMM PF01047
YP_695242.1	identified by match to protein family HMM PF01047
YP_695243.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_695244.1	identified by match to protein family HMM PF02525
YP_695245.1	identified by match to protein family HMM PF00293
YP_695246.1	identified by match to protein family HMM PF01569
YP_695247.1	identified by similarity to SP:P28671
YP_695248.1	identified by similarity to SP:Q56106
YP_695249.1	identified by similarity to GB:AAS08237.1
YP_695251.1	identified by similarity to GB:AAT29428.1; match to protein family HMM PF01863
YP_695252.1	identified by similarity to SP:O34411; match to protein family HMM PF00990; match to protein family HMM PF02811; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR01856
YP_695253.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02903
YP_695254.1	identified by similarity to GB:AAQ66048.1; match to protein family HMM PF06354
YP_695257.1	identified by similarity to GB:AAT61415.1; match to protein family HMM PF02698
YP_695258.1	identified by match to protein family HMM PF01497
YP_695259.1	identified by similarity to SP:P49936; match to protein family HMM PF01032
YP_695260.1	identified by similarity to SP:P49937; match to protein family HMM PF01032
YP_695261.1	identified by similarity to SP:P49938; match to protein family HMM PF00005
YP_695262.1	identified by match to protein family HMM PF00583
YP_695263.1	identified by similarity to GB:AAP11485.1
YP_695266.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644
YP_695267.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_695268.1	identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_695269.1	identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824
YP_695270.1	identified by match to protein family HMM PF03609
YP_695271.1	identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828
YP_695272.1	identified by similarity to GB:AAO79906.1; match to protein family HMM PF06115
YP_695274.1	identified by match to protein family HMM PF01522
YP_695275.1	identified by match to protein family HMM TIGR02206
YP_695277.1	identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837
YP_695278.1	identified by similarity to GB:BAB80538.1; match to protein family HMM PF00188
YP_695280.1	identified by match to protein family HMM PF00005
YP_695281.1	identified by match to protein family HMM PF00005
YP_695282.1	identified by similarity to GB:AAP25046.1; match to protein family HMM PF03703
YP_695283.1	identified by match to protein family HMM PF03703
YP_695284.1	identified by similarity to SP:P30338; match to protein family HMM PF01022
YP_695285.1	identified by similarity to SP:Q01257; match to protein family HMM PF01451
YP_695286.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_695287.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695288.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_695289.1	identified by match to protein family HMM PF02661
YP_695290.1	identified by similarity to GB:CAE82085.1
YP_695291.1	identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806
YP_695292.1	identified by similarity to SP:O34697; match to protein family HMM PF00005
YP_695293.1	identified by match to protein family HMM PF01055
YP_695294.1	identified by match to protein family HMM PF07876
YP_695295.1	identified by match to protein family HMM PF00266
YP_695297.1	identified by match to protein family HMM PF02915
YP_695298.1	identified by match to protein family HMM PF01074; match to protein family HMM PF07748
YP_695299.1	identified by match to protein family HMM PF00583
YP_695300.1	identified by similarity to SP:Q04944; match to protein family HMM PF00465
YP_695301.1	identified by similarity to SP:P37047; match to protein family HMM PF05651
YP_695303.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600
YP_695304.1	identified by similarity to SP:Q9Z9P2; match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_695305.1	identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_695307.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_695308.1	identified by similarity to PIR:E97182
YP_695309.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554
YP_695311.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_695312.1	identified by match to protein family HMM PF00583
YP_695313.1	identified by match to protein family HMM PF02518
YP_695315.1	identified by similarity to GB:AAB63267.1; match to protein family HMM PF04647
YP_695316.1	identified by match to protein family HMM PF00557
YP_695318.1	identified by similarity to SP:P39762; match to protein family HMM PF02073
YP_695319.1	identified by match to protein family HMM PF00583
YP_695320.1	identified by match to protein family HMM PF02588
YP_695321.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_695322.1	identified by match to protein family HMM PF00583
YP_695323.1	identified by match to protein family HMM PF06691
YP_695324.1	identified by similarity to SP:P26831; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167
YP_695325.1	identified by similarity to GB:AAD35845.1; match to protein family HMM PF01906
YP_695327.1	identified by match to protein family HMM PF00005
YP_695328.1	identified by similarity to GB:BAC24303.1
YP_695329.1	identified by match to protein family HMM PF01476
YP_695330.1	identified by similarity to PIR:F70426
YP_695331.1	identified by match to protein family HMM PF00293
YP_695332.1	identified by similarity to GB:AAP10150.1
YP_695334.1	identified by match to protein family HMM PF00465
YP_695335.1	identified by match to protein family HMM PF00936
YP_695336.1	identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528
YP_695337.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_695338.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07568
YP_695339.1	ethanolamine utilization protein EutA
YP_695340.1	identified by similarity to SP:P19635; match to protein family HMM PF06751
YP_695341.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_695342.1	identified by similarity to SP:Q9ZFU9; match to protein family HMM PF00936
YP_695343.1	identified by similarity to GB:AAL94295.1; match to protein family HMM PF00936
YP_695344.1	identified by similarity to GB:AAO36662.1; match to protein family HMM PF00171; match to protein family HMM TIGR02518
YP_695345.1	identified by similarity to SP:P41791; match to protein family HMM PF00936
YP_695346.1	identified by similarity to GB:AAL21361.1; match to protein family HMM PF01923
YP_695347.1	identified by match to protein family HMM PF06130
YP_695348.1	identified by similarity to GB:AAO36658.1; match to protein family HMM TIGR02536
YP_695349.1	identified by similarity to SP:P41792; match to protein family HMM PF03319
YP_695350.1	identified by similarity to GB:AAO36657.1; match to protein family HMM PF00936; match to protein family HMM TIGR02526
YP_695351.1	identified by similarity to SP:P41796; match to protein family HMM PF04346
YP_695352.1	identified by match to protein family HMM PF05899; match to protein family HMM PF06249
YP_695353.1	identified by match to protein family HMM PF00255
YP_695354.1	identified by match to protein family HMM PF00583
YP_695355.1	identified by similarity to GB:AAK80174.1
YP_695357.1	identified by match to protein family HMM PF00563
YP_695358.1	identified by match to protein family HMM PF03358
YP_695359.1	identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_695360.1	identified by similarity to GB:AAD45657.1; match to protein family HMM PF01041
YP_695361.1	identified by similarity to GB:AAG17415.1; match to protein family HMM PF02397
YP_695362.1	identified by match to protein family HMM PF00535
YP_695363.1	identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534
YP_695364.1	identified by similarity to GB:AAM94575.1
YP_695365.1	identified by similarity to GB:AAC78672.1
YP_695366.1	identified by similarity to GB:AAD37094.1; match to protein family HMM PF04991
YP_695367.1	identified by match to protein family HMM PF02706
YP_695368.1	identified by similarity to SP:P39851
YP_695370.1	identified by similarity to GB:AAP08085.1
YP_695371.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_695372.1	identified by similarity to GB:BAB72688.1
YP_695374.1	identified by similarity to GB:AAS39698.1
YP_695375.1	identified by similarity to GB:AAF12706.1; match to protein family HMM PF00589
YP_695376.1	identified by similarity to GB:AAL96793.1; match to protein family HMM PF06114
YP_695377.1	identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381
YP_695378.1	identified by similarity to GB:AAD44066.1
YP_695379.1	identified by match to protein family HMM PF02498
YP_695380.1	identified by similarity to GB:AAN36269.1
YP_695383.1	identified by similarity to GB:AAL96798.1
YP_695387.1	identified by similarity to GB:CAB53837.1
YP_695388.1	identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616
YP_695389.1	identified by similarity to GB:CAB53839.1
YP_695391.1	identified by match to protein family HMM PF05866
YP_695393.1	identified by similarity to GB:AAO35665.1
YP_695394.1	identified by similarity to GB:AAK03168.1
YP_695395.1	identified by similarity to SP:Q38627; match to protein family HMM PF03592
YP_695401.1	identified by similarity to GB:AAN67551.1
YP_695402.1	identified by similarity to GB:BAC63730.1
YP_695403.1	identified by similarity to GB:AAA56848.1
YP_695405.1	identified by similarity to GB:CAB53794.1
YP_695409.1	identified by similarity to PIR:AD1730
YP_695412.1	identified by similarity to GB:AAL96783.1
YP_695413.1	identified by similarity to GB:AAK27910.2
YP_695414.1	identified by similarity to PIR:B97132
YP_695415.1	identified by similarity to PIR:A97132
YP_695417.1	identified by similarity to GB:AAL96787.1
YP_695418.1	identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593
YP_695419.1	identified by similarity to GB:BAA29564.1
YP_695420.1	identified by match to protein family HMM PF01183
YP_695422.1	identified by similarity to GB:AAO35693.1
YP_695424.1	identified by similarity to GB:AAO35694.1
YP_695425.1	identified by match to protein family HMM PF01048
YP_695427.1	identified by similarity to GB:AAK75063.1; match to protein family HMM PF08020
YP_695428.1	identified by similarity to GB:CAA15293.1
YP_695429.1	identified by similarity to GB:BAD66218.1
YP_695430.1	identified by similarity to GB:AAB99318.1; match to protein family HMM PF01261
YP_695432.1	identified by similarity to SP:P10481; match to protein family HMM PF02012
YP_695433.1	identified by similarity to SP:Q56106
YP_695434.1	identified by similarity to GB:AAM86130.1
YP_695435.1	identified by match to protein family HMM PF02517
YP_695436.1	identified by similarity to PIR:A97215
YP_695439.1	identified by match to protein family HMM PF07728
YP_695440.1	identified by similarity to PIR:D81431
YP_695442.1	identified by similarity to SP:O28488
YP_695445.1	identified by match to protein family HMM PF02517
YP_695448.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_695449.1	identified by similarity to PIR:E71620
YP_695451.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_695452.1	identified by similarity to PIR:D90881; match to protein family HMM PF02698
YP_695454.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_695455.1	identified by similarity to SP:P33650; match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231
YP_695456.1	identified by match to protein family HMM PF04023
YP_695457.1	identified by similarity to GB:AAS43373.1
YP_695459.1	identified by similarity to GB:AAP27270.1
YP_695462.1	Possibly an isoschizomer of MboI found in Moraxella bovis.; identified by match to protein family HMM PF02976
YP_695463.1	identified by similarity to GB:AAC98421.1; match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_695464.1	identified by similarity to SP:P20589; match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_695466.1	identified by similarity to SP:P10426; match to protein family HMM PF06114
YP_695467.1	identified by match to protein family HMM PF01381
YP_695471.1	identified by match to protein family HMM PF00583
YP_695474.1	identified by similarity to SP:P02982; match to protein family HMM PF00083; match to protein family HMM PF07690
YP_695475.1	identified by match to protein family HMM PF01047
YP_695477.1	identified by similarity to SP:P08337; match to protein family HMM PF00293
YP_695478.1	identified by match to protein family HMM PF01381
YP_695480.1	identified by match to protein family HMM PF06803
YP_695485.1	identified by match to protein family HMM PF04055
YP_695486.1	identified by match to protein family HMM PF03483
YP_695489.1	identified by match to protein family HMM PF00293
YP_695492.1	identified by similarity to SP:P11549; match to protein family HMM PF00465; match to protein family HMM TIGR02638
YP_695493.1	identified by match to protein family HMM PF00165
YP_695494.1	catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose
YP_695495.1	identified by similarity to GB:AAO78868.1; match to protein family HMM PF00370
YP_695496.1	identified by similarity to SP:P11555; match to protein family HMM PF05025
YP_695497.1	identified by similarity to SP:P11550; match to protein family HMM PF00596
YP_695498.1	identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885
YP_695499.1	identified by match to protein family HMM PF01381
YP_695500.1	identified by match to protein family HMM PF00627
YP_695501.1	identified by match to protein family HMM PF00627
YP_695502.1	identified by similarity to GB:BAB95170.1; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695503.1	identified by similarity to PIR:F89918; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_695504.1	identified by match to protein family HMM PF05116; match to protein family HMM TIGR01484
YP_695505.1	identified by match to protein family HMM PF00583
YP_695507.1	identified by match to protein family HMM PF00583
YP_695508.1	identified by similarity to SP:P32090; match to protein family HMM PF00293
YP_695510.1	identified by similarity to SP:P32701; match to protein family HMM PF00563
YP_695512.1	identified by similarity to PIR:E97064
YP_695513.1	identified by similarity to SP:Q45537
YP_695514.1	identified by similarity to SP:Q45538; match to protein family HMM PF05067
YP_695515.1	identified by similarity to GB:AAP26047.1
YP_695516.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_695517.1	identified by similarity to GB:BAB81086.1
YP_695519.1	identified by match to protein family HMM PF00754; match to protein family HMM PF07554
YP_695521.1	identified by similarity to GB:BAB80595.1
YP_695522.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512
YP_695523.1	identified by match to protein family HMM PF01547
YP_695527.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_695528.1	identified by match to protein family HMM PF01047
YP_695531.1	identified by match to protein family HMM PF00583
YP_695532.1	identified by similarity to GB:BAC12292.1
YP_695533.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02368; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR01167; match to protein family HMM TIGR02104
YP_695534.1	identified by similarity to GB:AAO83068.1
YP_695535.1	identified by similarity to PIR:C97066; match to protein family HMM PF02698
YP_695538.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_695540.1	identified by match to protein family HMM PF00005
YP_695546.1	identified by similarity to GB:AAP08932.1
YP_695547.1	identified by match to protein family HMM PF00884
YP_695548.1	identified by similarity to GB:AAO35944.1; match to protein family HMM PF01794
YP_695549.1	identified by match to protein family HMM PF00728
YP_695551.1	identified by similarity to GB:AAO75267.1
YP_695552.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01978
YP_695556.1	identified by match to protein family HMM PF01757
YP_695557.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_695558.1	identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580
YP_695559.1	identified by match to protein family HMM PF01547
YP_695560.1	identified by similarity to SP:P94529; match to protein family HMM PF00528
YP_695561.1	identified by similarity to SP:P94530; match to protein family HMM PF00528
YP_695562.1	identified by similarity to GB:BAB80196.1
YP_695563.1	identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636
YP_695565.1	identified by similarity to GB:BAB69460.1; match to protein family HMM PF00722
YP_695569.1	identified by similarity to GB:AAK27981.1; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167
YP_695571.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437
YP_695572.1	identified by match to protein family HMM PF04023
YP_695573.1	identified by similarity to SP:P33649; match to protein family HMM PF04023
YP_695574.1	identified by similarity to PIR:E97027
YP_695575.1	identified by match to protein family HMM PF00583
YP_695579.1	identified by similarity to GB:AAP27300.1
YP_695580.1	identified by similarity to GB:AAP11485.1
YP_695581.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00881
YP_695582.1	identified by match to protein family HMM PF01638
YP_695583.1	identified by similarity to GB:AAO82003.1; match to protein family HMM PF05976
YP_695585.1	identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695586.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_695587.1	identified by similarity to GB:BAC14469.1
YP_695588.1	identified by similarity to GB:BAC14468.1
YP_695589.1	identified by similarity to GB:BAC14467.1
YP_695590.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_695591.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_695592.1	identified by similarity to GB:AAM32443.1
YP_695594.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851
YP_695597.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_695599.1	identified by similarity to PIR:B39083; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_695600.1	identified by similarity to SP:P07914; match to protein family HMM PF00106; match to protein family HMM PF01370
YP_695601.1	identified by match to protein family HMM PF02308
YP_695602.1	identified by similarity to SP:Q56106
YP_695603.1	identified by match to protein family HMM PF00583
YP_695604.1	identified by similarity to PIR:F86821; match to protein family HMM PF02129
YP_695605.1	identified by similarity to SP:P09548
YP_695606.1	identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_695608.1	identified by similarity to GB:AAS08237.1
YP_695609.1	identified by similarity to GB:AAO35927.1
YP_695610.1	identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_695611.1	identified by match to protein family HMM PF00881
YP_695614.1	identified by match to protein family HMM PF00753
YP_695615.1	identified by similarity to GB:AAM25863.1
YP_695616.1	identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_695617.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_695618.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_695619.1	identified by similarity to GB:AAB96343.1; match to protein family HMM PF02286
YP_695620.1	identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288
YP_695621.1	identified by similarity to GB:AAC27924.1; match to protein family HMM PF02287
YP_695622.1	identified by similarity to GB:AAB48853.1
YP_695624.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_695625.1	identified by similarity to GB:AAP48648.1; match to protein family HMM PF03928
YP_695626.1	identified by similarity to SP:P45513; match to protein family HMM PF00465
YP_695627.1	identified by match to protein family HMM PF00324
YP_695628.1	identified by similarity to SP:P58769; match to protein family HMM PF01794
YP_695629.1	identified by match to protein family HMM PF00583
YP_695630.1	identified by similarity to GB:AAP09389.1
YP_695632.1	identified by match to protein family HMM PF07784
YP_695633.1	identified by similarity to GB:AAO75277.1; match to protein family HMM PF07784
YP_695634.1	identified by similarity to SP:P07000; match to protein family HMM PF00561
YP_695635.1	identified by match to protein family HMM PF00805
YP_695637.1	identified by match to protein family HMM PF00375
YP_695638.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695639.1	identified by similarity to SP:P42332; match to protein family HMM PF00005
YP_695640.1	identified by similarity to SP:P42333
YP_695641.2	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_695642.1	identified by similarity to GB:AAO52845.1
YP_695643.1	identified by match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_695644.1	identified by match to protein family HMM PF00255
YP_695645.1	identified by match to protein family HMM PF00005
YP_695647.1	identified by match to protein family HMM PF02687
YP_695648.1	identified by match to protein family HMM PF01391
YP_695649.1	identified by match to protein family HMM PF04307
YP_695651.1	identified by match to protein family HMM PF00293
YP_695653.1	identified by match to protein family HMM PF00805
YP_695654.1	identified by match to protein family HMM PF01047
YP_695656.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_695657.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_695658.1	one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex
YP_695659.1	identified by similarity to SP:P94608; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_695660.1	identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695663.1	identified by match to protein family HMM PF00324
YP_695666.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_695667.1	identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; match to protein family HMM TIGR01167
YP_695669.1	identified by match to protein family HMM PF00375
YP_695673.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080
YP_695674.1	identified by similarity to GB:AAU19924.1
YP_695675.1	identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856
YP_695678.1	identified by similarity to GB:AAU17187.1
YP_695679.1	identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231
YP_695681.1	identified by match to protein family HMM PF02705
YP_695682.1	identified by match to protein family HMM PF00210
YP_695683.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883
YP_695684.1	identified by match to protein family HMM PF00728
YP_695686.1	identified by similarity to PIR:B96993
YP_695687.1	identified by similarity to SP:P31845; match to protein family HMM PF03323
YP_695688.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606
YP_695689.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_695691.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_695692.1	identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_695693.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508
YP_695694.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_695695.1	identified by match to protein family HMM PF03060
YP_695696.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_695697.1	identified by match to protein family HMM PF04055
YP_695698.1	identified by match to protein family HMM PF05343
YP_695701.1	identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464
YP_695702.1	identified by similarity to PIR:A96978
YP_695703.1	identified by similarity to PIR:E97022; match to protein family HMM PF06571
YP_695704.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_695706.1	identified by similarity to SP:P60083; match to protein family HMM PF05979
YP_695707.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_695708.1	identified by match to protein family HMM PF01544
YP_695709.1	catalyzes the removal of amino acids from the N termini of peptides
YP_695710.1	identified by similarity to GB:AAC61683.1; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_695711.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_695712.1	identified by similarity to GB:BAD75135.1
YP_695713.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_695714.1	identified by similarity to PIR:C97194
YP_695715.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992
YP_695716.1	identified by similarity to PIR:D84071; match to protein family HMM PF02811
YP_695717.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_695718.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553
YP_695719.1	identified by similarity to GB:AAO91868.1; match to protein family HMM PF01063
YP_695720.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_695721.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_695722.1	identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_695723.1	identified by similarity to SP:P22291; match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498
YP_695726.1	identified by match to protein family HMM PF00224
YP_695727.1	identified by match to protein family HMM PF01569
YP_695729.1	identified by match to protein family HMM PF02641
YP_695730.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_695731.1	identified by similarity to PIR:D83749
YP_695732.1	identified by match to protein family HMM PF01022; match to protein family HMM PF02579
YP_695733.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_695734.1	identified by match to protein family HMM PF01633; match to protein family HMM PF01636
YP_695735.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_695737.1	identified by similarity to SP:P36561; match to protein family HMM PF02654
YP_695738.1	identified by similarity to GB:BAD76543.1
YP_695739.1	identified by match to protein family HMM PF00300
YP_695740.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_695741.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_695742.1	identified by match to protein family HMM PF01497
YP_695743.1	identified by match to protein family HMM PF01032
YP_695744.1	identified by match to protein family HMM PF00005
YP_695745.1	identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290
YP_695746.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_695747.1	identified by similarity to SP:Q9F234; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF01055; match to protein family HMM PF02368; match to protein family HMM PF07554
YP_695750.1	identified by similarity to GB:AAS10713.1
YP_695751.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_695753.1	identified by similarity to SP:P30010; match to protein family HMM PF02353
YP_695754.1	identified by match to protein family HMM PF00581
YP_695756.1	identified by similarity to PIR:D97107
YP_695757.1	identified by match to protein family HMM PF03372
YP_695758.1	catalyzes the formation of L-histidinol from L-histidinol phosphate
YP_695759.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_695760.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_695761.1	identified by similarity to PIR:H97029; match to protein family HMM PF01957
YP_695762.1	identified by match to protein family HMM PF01145
YP_695763.1	identified by match to protein family HMM PF01168
YP_695764.1	identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947
YP_695765.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_695766.1	identified by similarity to GB:BAB35759.1; match to protein family HMM PF02508; match to protein family HMM TIGR01943
YP_695767.1	involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate
YP_695768.1	identified by match to protein family HMM PF00383
YP_695769.1	identified by match to protein family HMM PF01047
YP_695770.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_695771.1	identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_695772.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_695773.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_695774.1	identified by similarity to SP:P49786; match to protein family HMM PF00364; match to protein family HMM TIGR00531
YP_695775.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_695776.1	identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514
YP_695777.1	identified by match to protein family HMM TIGR00515
YP_695778.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_695779.1	identified by match to protein family HMM PF03551
YP_695781.1	identified by match to protein family HMM PF01261
YP_695782.1	identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_695783.1	identified by similarity to GB:CAD47129.1; match to protein family HMM PF06962
YP_695784.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_695785.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_695786.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_695787.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_695788.1	identified by match to protein family HMM PF00583
YP_695789.1	identified by similarity to PIR:H97126
YP_695792.1	identified by match to protein family HMM PF00376
YP_695794.1	identified by similarity to SP:P54965; match to protein family HMM PF02275
YP_695795.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_695796.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_695802.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_695803.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493
YP_695804.1	This protein performs the mismatch recognition step during the DNA repair process
YP_695805.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_695806.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_695807.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_695808.1	identified by match to protein family HMM PF06838
YP_695810.1	Represses a number of genes involved in the response to DNA damage
YP_695811.1	identified by similarity to GB:AAO35863.1
YP_695812.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_695813.1	identified by similarity to PIR:G97219
YP_695814.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_695815.1	identified by similarity to SP:P25737; match to protein family HMM PF00324
YP_695816.1	identified by match to protein family HMM PF00375
YP_695818.1	identified by similarity to GB:AAV43180.1; match to protein family HMM PF02588
YP_695821.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_695822.1	identified by similarity to GB:AAM24193.1
YP_695823.1	identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_695824.1	identified by similarity to PDB:1Y9W
YP_695825.1	identified by match to protein family HMM PF00583
YP_695827.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_695828.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_695829.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_695830.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_695831.1	identified by similarity to SP:P48795; match to protein family HMM PF01979; match to protein family HMM TIGR00857
YP_695832.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_695833.1	identified by similarity to SP:P37322
YP_695834.1	identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483
YP_695835.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_695836.1	identified by similarity to SP:Q59935; match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_695838.1	identified by match to protein family HMM PF07685
YP_695841.1	identified by similarity to GB:AAO35411.1
YP_695843.1	identified by match to protein family HMM PF06541
YP_695845.1	identified by match to protein family HMM PF00324
YP_695846.1	identified by similarity to PIR:AF1870
YP_695847.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_695848.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_695850.1	identified by similarity to GB:AAP78125.1
YP_695851.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_695852.1	identified by match to protein family HMM PF04055
YP_695853.1	identified by similarity to SP:P26659; match to protein family HMM PF06733
YP_695854.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_695855.1	identified by similarity to GB:AAF72522.1; similarity to GB:BAD47679.1
YP_695856.1	identified by similarity to GB:BAD50849.1
YP_695857.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_695858.1	identified by similarity to SP:Q00758; match to protein family HMM PF01943
YP_695859.1	identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_695860.1	identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_695861.1	identified by similarity to SP:Q53727; match to protein family HMM PF00580
YP_695862.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_695865.1	identified by match to protein family HMM PF01475
YP_695866.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_695867.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801
YP_695868.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_695869.1	identified by similarity to SP:P49938; match to protein family HMM PF00005
YP_695870.1	identified by similarity to SP:Q56992; match to protein family HMM PF01032
YP_695871.1	identified by match to protein family HMM PF01497
YP_695872.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_695873.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466
YP_695874.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_695875.1	identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_695876.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_695877.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR02469
YP_695878.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467
YP_695879.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_695880.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_695881.1	identified by similarity to SP:Q05592; match to protein family HMM PF06180
YP_695882.1	identified by match to protein family HMM PF06725
YP_695884.1	identified by match to protein family HMM PF00018; match to protein family HMM PF01832; match to protein family HMM PF06347
YP_695885.1	identified by similarity to PIR:F97215
YP_695887.1	identified by similarity to SP:P26831; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07555
YP_695889.1	identified by similarity to SP:P28764; match to protein family HMM PF00081; match to protein family HMM PF02777
YP_695891.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_695893.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_695894.1	identified by match to protein family HMM PF02698
YP_695895.1	identified by similarity to SP:P51777; similarity to SP:Q45098; match to protein family HMM PF00313
YP_695896.1	identified by match to protein family HMM PF00403
YP_695897.1	identified by match to protein family HMM PF03734
YP_695898.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_695899.1	identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_695900.2	identified by similarity to GB:AAK15004.1
YP_695904.1	identified by match to protein family HMM PF06539
YP_695906.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_695907.1	identified by match to protein family HMM PF00175
YP_695908.1	identified by similarity to SP:P13604; match to protein family HMM PF00465
YP_695909.1	identified by similarity to SP:P37966
YP_695910.1	identified by match to protein family HMM PF00018
YP_695911.1	identified by similarity to SP:P50191
YP_695912.1	identified by match to protein family HMM PF07553
YP_695914.1	identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_695915.1	identified by similarity to GB:AAM55479.1; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07554
YP_695917.1	identified by similarity to SP:P26257; match to protein family HMM PF00404; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF07532
YP_695918.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_695919.1	identified by similarity to SP:P39761; match to protein family HMM PF01979
YP_695920.1	identified by match to protein family HMM PF01547
YP_695921.1	identified by match to protein family HMM PF00005
YP_695922.1	identified by match to protein family HMM PF00528
YP_695923.1	identified by match to protein family HMM PF00528
YP_695924.1	identified by similarity to GB:BAB80980.1
YP_695925.1	identified by match to protein family HMM PF01207
YP_695926.2	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_695927.1	identified by similarity to GB:CAA66892.1
YP_695928.1	identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733
YP_695930.1	identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167
YP_695932.1	identified by match to protein family HMM PF00754; match to protein family HMM PF07554
YP_695933.1	identified by similarity to SP:P23054; match to protein family HMM PF07690
YP_695934.1	identified by match to protein family HMM PF00392
YP_695935.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_695936.1	identified by match to protein family HMM PF05976
YP_695937.1	identified by match to protein family HMM PF01047
YP_695938.1	identified by match to protein family HMM PF03572
YP_695939.1	identified by match to protein family HMM PF06496
YP_695940.1	identified by match to protein family HMM PF02518
YP_695941.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_695942.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_695944.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_695945.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_695946.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_695947.1	identified by similarity to GB:CAB12841.1
YP_695948.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_695950.1	identified by match to protein family HMM PF00324
YP_695951.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_695952.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_695953.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_695954.1	identified by similarity to SP:Q59309; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_695955.1	identified by match to protein family HMM PF04198
YP_695956.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_695957.1	identified by similarity to GB:AAM23666.1
YP_695958.1	identified by similarity to GB:AAO35342.1
YP_695959.1	identified by match to protein family HMM PF02608
YP_695960.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_695961.1	identified by match to protein family HMM PF00588
YP_695962.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_695963.1	identified by match to protein family HMM PF04294; match to protein family HMM PF07501
YP_695964.1	identified by match to protein family HMM PF01183
YP_695965.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_695966.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_695967.1	identified by match to protein family HMM PF00892
YP_695968.1	identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_695969.1	identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553
YP_695970.1	identified by match to protein family HMM PF00037
YP_695971.1	identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_695972.1	identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_695973.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239
YP_695974.1	identified by similarity to SP:P10344; match to protein family HMM PF00497
YP_695975.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_695976.1	identified by similarity to SP:P27675; match to protein family HMM PF00005
YP_695978.1	similar to YegS from E. coli
YP_695979.1	identified by similarity to SP:P39823; match to protein family HMM PF01066
YP_695980.1	identified by similarity to GB:AAO34984.1
YP_695981.1	identified by match to protein family HMM PF02915
YP_695982.1	identified by similarity to SP:P37875; match to protein family HMM PF04293
YP_695983.1	identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877
YP_695984.1	identified by similarity to PIR:JC4602; match to protein family HMM PF06798
YP_695985.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_695986.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_695987.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_695988.1	identified by match to protein family HMM TIGR00097
YP_695989.1	identified by match to protein family HMM PF01734
YP_695990.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_695991.1	identified by similarity to SP:P23905; match to protein family HMM PF00532
YP_695992.1	with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains
YP_695993.1	ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex
YP_695994.1	identified by similarity to SP:P05149; match to protein family HMM PF01263
YP_695995.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_695996.1	catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism
YP_695997.1	identified by match to protein family HMM PF00485
YP_695998.1	identified by similarity to PIR:E96982; match to protein family HMM PF04239
YP_695999.1	identified by similarity to PIR:D96982
YP_696000.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859
YP_696001.1	identified by similarity to PIR:A96980
YP_696002.1	identified by match to protein family HMM PF01928
YP_696005.1	identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF07653
YP_696009.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_696010.1	identified by similarity to GB:AAR27352.1
YP_696011.1	identified by match to protein family HMM PF01183
YP_696013.1	identified by similarity to PIR:H97036
YP_696015.1	identified by similarity to GB:AAL96788.1
YP_696016.1	identified by match to protein family HMM PF00753
YP_696017.1	identified by match to protein family HMM PF01551; match to protein family HMM TIGR01665
YP_696018.1	identified by match to protein family HMM TIGR01633
YP_696019.1	identified by match to protein family HMM TIGR01760
YP_696020.1	identified by similarity to GB:AAF33581.1
YP_696021.1	identified by similarity to GB:AAL96782.1
YP_696022.1	identified by match to protein family HMM TIGR01603
YP_696023.1	identified by similarity to GB:AAL96780.1
YP_696024.1	identified by match to protein family HMM TIGR01725
YP_696025.1	identified by match to protein family HMM TIGR01563
YP_696026.1	identified by match to protein family HMM TIGR01560
YP_696027.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_696028.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_696029.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_696030.1	identified by match to protein family HMM PF03354
YP_696031.1	identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558
YP_696033.1	identified by match to protein family HMM PF00589
YP_696038.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_696040.1	identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796
YP_696041.1	identified by similarity to GB:AAL96804.1; match to protein family HMM TIGR02220
YP_696042.1	identified by similarity to GB:AAL96803.1
YP_696043.1	identified by similarity to GB:AAO35656.1
YP_696045.1	identified by similarity to GB:AAL80538.1
YP_696046.1	identified by match to protein family HMM PF01381
YP_696047.1	identified by match to protein family HMM PF01381
YP_696048.1	identified by similarity to GB:AAO79115.1
YP_696049.1	identified by match to protein family HMM PF02086
YP_696050.1	identified by similarity to GB:AAO35652.1; match to protein family HMM PF06114
YP_696051.1	identified by match to protein family HMM PF00239
YP_696052.1	identified by match to protein family HMM PF04073
YP_696053.1	identified by similarity to SP:P45491
YP_696055.1	identified by similarity to SP:Q58794
YP_696056.1	member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_696057.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754
YP_696058.1	identified by match to protein family HMM PF02080
YP_696059.1	identified by similarity to SP:Q58828
YP_696060.1	identified by match to protein family HMM PF07907
YP_696061.1	identified by match to protein family HMM PF00746; match to protein family HMM PF01336; match to protein family HMM TIGR01167
YP_696062.1	identified by match to protein family HMM PF00583
YP_696063.1	identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856
YP_696064.1	identified by match to protein family HMM PF00209
YP_696065.1	identified by match to protein family HMM TIGR02357
YP_696066.1	identified by match to protein family HMM PF00155; match to protein family HMM PF04864
YP_696067.1	identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846
YP_696068.1	identified by match to protein family HMM PF01663
YP_696070.1	identified by similarity to GB:AAO07569.1
YP_696071.1	identified by match to protein family HMM PF04018
YP_696072.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_696073.1	identified by match to protein family HMM PF02557
YP_696074.1	identified by similarity to PIR:C96961
YP_696075.1	identified by similarity to GB:AAO36346.1
YP_696076.1	identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500
YP_696077.1	identified by similarity to PIR:B97000
YP_696078.1	identified by similarity to PIR:C97224
YP_696084.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_696085.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_696086.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902
YP_696087.1	binds and unfolds substrates as part of the ClpXP protease
YP_696088.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_696089.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_696090.1	identified by match to protein family HMM PF01261
YP_696091.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_696093.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_696096.1	3'-5' exonuclease of DNA polymerase III
YP_696097.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_696099.1	identified by similarity to GB:AAO35894.1
YP_696100.1	identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613
YP_696101.1	identified by match to protein family HMM PF00654; match to protein family HMM PF02080
YP_696102.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945
YP_696103.1	identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946
YP_696104.1	identified by similarity to GB:CAH17248.1; match to protein family HMM PF07866
YP_696105.1	Required for the synthesis of the thiazole moiety
YP_696106.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_696107.1	identified by similarity to SP:P21204; match to protein family HMM PF01842
YP_696108.1	identified by match to protein family HMM PF02574
YP_696109.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_696110.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_696111.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_696113.1	identified by match to protein family HMM PF03576
YP_696114.1	identified by match to protein family HMM PF00269
YP_696115.1	identified by similarity to GB:AAM24816.1
YP_696116.1	catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline
YP_696117.1	identified by match to protein family HMM PF06166
YP_696118.2	identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149
YP_696119.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_696120.1	identified by match to protein family HMM PF04607
YP_696121.1	identified by similarity to SP:O66043; match to protein family HMM PF00614
YP_696122.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02910; match to protein family HMM PF07992
YP_696123.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_696124.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_696125.1	identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469
YP_696126.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_696127.1	catalyzes the formation of siroheme from precorrin-2
YP_696128.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_696129.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912
YP_696130.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_696131.1	identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910
YP_696132.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_696133.1	identified by similarity to SP:P11097; match to protein family HMM PF01226
YP_696135.1	identified by match to protein family HMM PF01541
YP_696136.1	identified by match to protein family HMM PF00165
YP_696139.1	identified by match to protein family HMM PF00075
YP_696140.1	identified by similarity to GB:AAO35153.1; match to protein family HMM PF06803
YP_696141.1	identified by match to protein family HMM PF01694
YP_696142.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181
YP_696143.1	identified by similarity to PIR:F97017
YP_696144.1	identified by similarity to PIR:E97017
YP_696145.1	identified by similarity to SP:O87862; match to protein family HMM PF00005
YP_696146.1	identified by match to protein family HMM PF00950
YP_696147.1	identified by similarity to GB:AAD35897.1; match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_696149.1	identified by match to protein family HMM PF01475
YP_696150.1	identified by similarity to SP:P08188; match to protein family HMM PF03613
YP_696151.1	identified by similarity to SP:P08187; match to protein family HMM PF03609
YP_696152.1	identified by similarity to SP:P37081; match to protein family HMM PF03830
YP_696153.1	identified by match to protein family HMM PF03610
YP_696154.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_696155.1	identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909
YP_696156.1	identified by match to protein family HMM PF00266
YP_696157.1	identified by match to protein family HMM PF00005
YP_696158.1	identified by match to protein family HMM PF00692
YP_696160.1	identified by similarity to GB:AAP29334.1
YP_696161.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_696162.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_696164.1	identified by match to protein family HMM PF01522
YP_696166.1	identified by similarity to GB:AAO36152.1
YP_696167.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815
YP_696169.1	identified by match to protein family HMM PF00294
YP_696170.1	identified by similarity to GB:AAO79751.1
YP_696171.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_696172.1	identified by match to protein family HMM PF00005
YP_696173.1	identified by match to protein family HMM PF00528
YP_696174.1	identified by similarity to GB:AAS10709.1
YP_696176.1	identified by similarity to PDB:1F2U_A
YP_696178.1	identified by similarity to GB:AAO80309.1; match to protein family HMM PF01925
YP_696182.1	identified by match to protein family HMM PF01171
YP_696183.1	ACT domain-containing protein
YP_696184.1	identified by similarity to GB:AAF42001.1; match to protein family HMM PF05167
YP_696185.1	identified by similarity to GB:AAO36815.1; match to protein family HMM PF06177
YP_696186.1	identified by match to protein family HMM PF00753
YP_696187.1	identified by similarity to PIR:S60140; match to protein family HMM PF02518
YP_696188.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_696189.1	identified by similarity to SP:Q02114; match to protein family HMM PF01520
YP_696190.1	identified by similarity to PIR:C97072; match to protein family HMM PF01910
YP_696191.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501
YP_696192.1	identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_696193.1	identified by match to protein family HMM PF00005
YP_696194.1	identified by match to protein family HMM PF01522
YP_696195.1	identified by match to protein family HMM PF02012
YP_696196.1	decatenates replicating daughter chromosomes
YP_696197.1	identified by match to protein family HMM PF03703
YP_696198.1	identified by match to protein family HMM PF03703
YP_696200.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495
YP_696201.1	identified by similarity to GB:AAO35207.1
YP_696202.1	identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062
YP_696204.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_696205.1	identified by similarity to GB:CAE77656.1
YP_696206.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_696208.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_696209.1	identified by similarity to GB:AAM31362.1
YP_696211.1	identified by similarity to PDB:1U24
YP_696212.1	identified by similarity to GB:AAB08042.1; match to protein family HMM PF00005; match to protein family HMM PF00664
YP_696213.1	identified by similarity to GB:AAB08041.1; match to protein family HMM PF00005; match to protein family HMM PF00664
YP_696218.1	identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294
YP_696219.1	identified by similarity to SP:P07819; match to protein family HMM PF00251; match to protein family HMM TIGR01322
YP_696220.1	identified by similarity to SP:P74892; match to protein family HMM PF00532
YP_696221.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996
YP_696222.1	identified by similarity to PIR:B96903
YP_696223.1	identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912
YP_696224.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_696225.1	identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910
YP_696226.1	identified by similarity to GB:AAK80322.1
YP_696227.1	identified by match to protein family HMM PF02687
YP_696228.1	identified by match to protein family HMM PF00005
YP_696230.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_696231.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_696232.1	identified by similarity to PIR:D97239; match to protein family HMM PF06207
YP_696233.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_696234.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_696235.1	identified by similarity to GB:AAS39397.1
YP_696236.1	identified by match to protein family HMM PF01522
YP_696237.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104
YP_696238.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_696241.1	identified by match to protein family HMM PF00884
YP_696242.1	identified by similarity to PIR:C97206; match to protein family HMM PF06081
YP_696243.1	identified by match to protein family HMM PF01255
YP_696244.1	identified by similarity to SP:P22871; match to protein family HMM PF01593; match to protein family HMM TIGR02734
YP_696245.1	identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254
YP_696247.1	identified by match to protein family HMM PF04647
YP_696248.1	identified by similarity to GB:AAM23836.1
YP_696249.1	identified by similarity to SP:P58010
YP_696251.1	identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367
YP_696252.1	identified by match to protein family HMM PF00817
YP_696253.1	identified by similarity to SP:P35137; match to protein family HMM PF00160
YP_696255.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_696256.1	identified by similarity to SP:P23853; match to protein family HMM PF04012
YP_696258.1	identified by similarity to PIR:B96938
YP_696259.1	Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine
YP_696260.1	identified by match to protein family HMM PF01734
YP_696261.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_696262.1	identified by similarity to GB:AAO34773.1; match to protein family HMM PF02629
YP_696263.1	identified by match to protein family HMM PF02653
YP_696264.1	identified by match to protein family HMM PF02653
YP_696265.1	identified by match to protein family HMM PF00005
YP_696266.1	identified by match to protein family HMM PF02608
YP_696267.1	identified by similarity to SP:P18773
YP_696268.1	identified by match to protein family HMM PF02361
YP_696269.1	identified by similarity to SP:Q8XK20; match to protein family HMM PF00005
YP_696270.1	identified by match to protein family HMM PF07155
YP_696271.1	identified by match to protein family HMM PF00581
YP_696273.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104
YP_696274.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_696276.1	identified by similarity to PIR:C97179; match to protein family HMM PF06738
YP_696279.1	identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_696281.1	identified by match to protein family HMM PF00085
YP_696282.1	identified by similarity to GB:AAB68821.1; match to protein family HMM PF05448
YP_696283.1	identified by match to protein family HMM PF00753
YP_696284.1	identified by match to protein family HMM PF02517
YP_696285.1	identified by similarity to GB:AAO34823.1
YP_696286.1	identified by similarity to SP:P25053; match to protein family HMM PF02581
YP_696287.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_696288.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_696289.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_696290.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683
YP_696291.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_696292.1	identified by match to protein family HMM PF04607
YP_696293.1	identified by similarity to GB:AAO35994.1
YP_696294.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_696295.1	identified by similarity to PIR:B96903
YP_696297.1	identified by match to protein family HMM PF01522
YP_696301.1	identified by match to protein family HMM PF01551
YP_696304.1	identified by similarity to PIR:D97030
YP_696305.1	identified by similarity to GB:AAM24475.1; match to protein family HMM PF06949
YP_696306.1	identified by match to protein family HMM PF00580
YP_696308.1	identified by match to protein family HMM PF01545
YP_696309.1	identified by similarity to GB:AAO35548.1
YP_696310.1	identified by similarity to PIR:A97351
YP_696312.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851
YP_696313.1	identified by match to protein family HMM PF00356
YP_696314.1	identified by similarity to SP:P04984; match to protein family HMM PF02653
YP_696315.1	identified by similarity to SP:P04983; match to protein family HMM PF00005
YP_696316.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_696317.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_696318.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_696319.1	identified by match to protein family HMM PF00953
YP_696320.1	identified by match to protein family HMM PF01022
YP_696321.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_696322.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_696323.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_696324.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex
YP_696325.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex
YP_696326.1	identified by match to protein family HMM PF01991
YP_696327.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_696328.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.
YP_696329.1	identified by similarity to SP:P00859; match to protein family HMM TIGR02926
YP_696330.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_696331.1	identified by similarity to PIR:A97026
YP_696332.1	identified by similarity to PIR:G97025
YP_696333.1	identified by match to protein family HMM PF01943; match to protein family HMM TIGR02900
YP_696335.1	identified by similarity to PIR:G97101
YP_696336.1	identified by match to protein family HMM PF00132
YP_696339.1	identified by match to protein family HMM PF01037
YP_696340.1	identified by similarity to PIR:E97020; match to protein family HMM PF04070
YP_696343.1	identified by match to protein family HMM PF00753
YP_696344.1	identified by similarity to GB:AAO35559.1
YP_696345.1	identified by match to protein family HMM PF04023
YP_696346.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437
YP_696348.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_696349.1	identified by match to protein family HMM PF02541
YP_696350.1	identified by similarity to SP:P19579
YP_696351.1	identified by match to protein family HMM PF02163
YP_696352.1	identified by match to protein family HMM PF02562
YP_696353.1	identified by match to protein family HMM PF00929
YP_696354.1	identified by match to protein family HMM PF00436
YP_696355.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_696356.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_696357.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_696358.1	identified by match to protein family HMM PF04232
YP_696359.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_696360.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_696361.1	identified by similarity to SP:P46322; match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_696362.2	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125
YP_696363.1	identified by similarity to SP:P21458; match to protein family HMM PF01580
YP_696364.1	identified by match to protein family HMM PF00574
YP_696365.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_696366.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_696367.1	identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_696368.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_696369.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_696370.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_696371.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_696372.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_696373.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_696374.1	identified by match to protein family HMM PF01248
YP_696375.1	identified by similarity to PIR:B97122; match to protein family HMM PF04296
YP_696376.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_696377.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_696378.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_696379.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_696380.1	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_696381.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_696382.2	identified by similarity to SP:O31752; match to protein family HMM PF01148
YP_696383.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_696384.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_696385.1	Catalyzes the phosphorylation of UMP to UDP
YP_696386.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_696387.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_696388.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_696389.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_696390.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_696391.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_696392.1	identified by similarity to SP:Q895L7; match to protein family HMM PF02021
YP_696393.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_696394.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_696395.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_696396.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_696397.1	Essential for efficient processing of 16S rRNA
YP_696398.1	identified by similarity to SP:Q97I96
YP_696399.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_696400.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_696401.1	identified by match to protein family HMM PF04297
YP_696402.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_696403.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168
YP_696404.1	identified by match to protein family HMM PF04055
YP_696405.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_696406.1	carries the fatty acid chain in fatty acid biosynthesis
YP_696407.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_696408.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_696409.1	identified by similarity to GB:AAB18302.1; match to protein family HMM PF02620
YP_696410.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_696411.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_696412.1	identified by similarity to PIR:H97114; match to protein family HMM PF05636
YP_696413.1	identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871
YP_696414.1	identified by similarity to GB:AAO35803.1
YP_696415.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_696416.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_696417.1	catalyzes branch migration in Holliday junction intermediates
YP_696418.1	identified by match to protein family HMM PF02734
YP_696419.1	identified by similarity to GB:AAO35798.1; match to protein family HMM PF03780
YP_696420.1	required for 70S ribosome assembly
YP_696421.1	identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378
YP_696422.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_696423.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_696424.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714
YP_696425.1	identified by match to protein family HMM PF00481
YP_696426.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_696427.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_696428.1	identified by match to protein family HMM PF04298
YP_696429.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_696430.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_696431.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_696432.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_696433.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_696434.1	Essential for recycling GMP and indirectly, cGMP
YP_696435.1	identified by similarity to SP:Q97ID1; match to protein family HMM PF04025
YP_696436.1	identified by similarity to GB:AAO35784.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255
YP_696437.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_696438.1	identified by match to protein family HMM PF00710
YP_696439.1	identified by similarity to SP:P35149; match to protein family HMM TIGR02836
YP_696440.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_696441.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_696442.1	identified by similarity to PIR:A97111; match to protein family HMM PF04459
YP_696443.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_696444.1	identified by similarity to PIR:F97109; match to protein family HMM PF02578
YP_696445.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_696446.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_696447.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_696448.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_696449.1	identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854
YP_696451.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_696452.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_696453.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420
YP_696454.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_696455.1	identified by match to protein family HMM PF00905
YP_696456.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_696457.1	identified by match to protein family HMM PF01136
YP_696458.1	identified by match to protein family HMM PF01596
YP_696459.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_696460.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_696461.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_696462.1	identified by match to protein family HMM PF01475
YP_696463.1	identified by similarity to PIR:D97107; match to protein family HMM PF06949
YP_696464.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_696465.1	identified by similarity to SP:Q97IG2; match to protein family HMM PF06135
YP_696466.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_696467.1	identified by match to protein family HMM PF05239
YP_696468.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_696469.1	identified by match to protein family HMM PF01592
YP_696470.1	identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212
YP_696471.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_696472.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_696473.1	identified by match to protein family HMM PF03473
YP_696474.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_696475.1	identified by match to protein family HMM PF00994
YP_696476.1	identified by similarity to SP:Q9WX94
YP_696477.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_696478.1	identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176
YP_696479.1	identified by similarity to GB:BAA74793.1; match to protein family HMM PF00070; match to protein family HMM PF07992
YP_696480.1	identified by match to protein family HMM PF00037
YP_696481.1	identified by similarity to GB:BAA74791.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_696482.1	identified by similarity to GB:CAB13916.1
YP_696483.1	identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_696484.1	identified by similarity to SP:P25983
YP_696485.1	identified by match to protein family HMM PF00768
YP_696486.1	identified by similarity to GB:AAO36077.1
YP_696487.1	identified by similarity to GB:AAO36078.1; match to protein family HMM TIGR02874
YP_696488.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_696489.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_696490.1	identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943
YP_696491.1	identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644
YP_696492.1	identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225
YP_696493.1	identified by similarity to SP:P37873; match to protein family HMM TIGR02831
YP_696494.1	identified by match to protein family HMM PF00293
YP_696496.1	identified by similarity to GB:CAB87985.1; match to protein family HMM PF00072; match to protein family HMM TIGR02875
YP_696497.1	identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860
YP_696498.1	identified by similarity to SP:P17894; match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_696499.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_696500.1	identified by match to protein family HMM PF01513
YP_696501.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_696502.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_696503.1	identified by similarity to SP:Q08291; match to protein family HMM PF00348
YP_696504.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_696505.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_696506.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_696507.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_696508.1	identified by similarity to SP:Q53485; match to protein family HMM PF03780
YP_696510.1	identified by match to protein family HMM TIGR02830
YP_696511.1	identified by match to protein family HMM TIGR02896
YP_696512.1	identified by match to protein family HMM TIGR02829
YP_696513.1	identified by match to protein family HMM TIGR02849
YP_696514.1	identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848
YP_696515.1	necessary for complete engulfment of forespore
YP_696516.1	identified by match to protein family HMM TIGR02858
YP_696518.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_696525.1	identified by match to protein family HMM TIGR02532
YP_696526.1	identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482
YP_696527.1	identified by match to protein family HMM PF00437
YP_696529.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_696530.1	identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833
YP_696531.1	identified by match to protein family HMM PF01170
YP_696532.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_696533.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_696534.1	identified by match to protein family HMM PF05103
YP_696535.1	identified by match to protein family HMM PF01479
YP_696536.1	identified by similarity to PIR:C97161; match to protein family HMM PF04472
YP_696537.1	identified by similarity to GB:AAO36167.1; match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_696538.1	identified by similarity to GB:AAO36168.1; match to protein family HMM PF05949
YP_696539.1	identified by similarity to SP:P28265; match to protein family HMM PF06947
YP_696540.1	identified by similarity to GB:AAO36170.1; match to protein family HMM PF05949
YP_696542.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615
YP_696543.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_696544.1	identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_696545.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_696546.2	identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_696548.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_696549.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_696550.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884
YP_696551.1	identified by match to protein family HMM PF04961
YP_696553.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_696554.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_696555.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_696556.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_696557.1	identified by match to protein family HMM PF00041
YP_696558.1	identified by match to protein family HMM PF00754; match to protein family HMM PF03160
YP_696559.1	identified by match to protein family HMM PF03009
YP_696560.1	identified by match to protein family HMM PF01070; match to protein family HMM PF01791
YP_696561.1	identified by similarity to GB:AAO36753.1; match to protein family HMM PF04463
YP_696562.1	identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_696563.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_696564.1	identified by match to protein family HMM PF01136
YP_696565.1	identified by similarity to SP:Q02150; match to protein family HMM PF02811; match to protein family HMM TIGR01856
YP_696567.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_696568.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_696569.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_696570.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_696571.1	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
YP_696572.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_696573.1	identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_696574.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_696575.1	identified by similarity to PIR:D97191; match to protein family HMM TIGR02834
YP_696576.1	identified by similarity to PIR:E97191
YP_696577.1	identified by match to protein family HMM PF01869
YP_696578.1	identified by match to protein family HMM PF00293
YP_696581.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_696582.1	identified by similarity to GB:AAS43311.1
YP_696584.1	identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296
YP_696585.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_696586.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_696587.1	identified by match to protein family HMM PF00155
YP_696588.1	identified by match to protein family HMM PF02572
YP_696589.1	identified by match to protein family HMM PF00132
YP_696590.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_696591.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_696592.1	identified by similarity to PIR:A97194
YP_696593.1	identified by match to protein family HMM PF01594
YP_696594.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_696595.1	identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_696596.1	identified by similarity to GB:AAN53875.1; match to protein family HMM PF06172
YP_696597.1	identified by match to protein family HMM PF00654; match to protein family HMM PF02080
YP_696598.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_696599.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_696600.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_696601.1	identified by match to protein family HMM PF01841
YP_696602.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_696603.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_696604.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_696605.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_696606.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_696607.1	identified by match to protein family HMM PF01244
YP_696608.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_696609.1	identified by similarity to PIR:B89847; match to protein family HMM PF06738
YP_696610.1	identified by similarity to GB:AAO36791.1
YP_696611.1	identified by similarity to PIR:F97179; match to protein family HMM PF02583
YP_696612.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_696613.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_696614.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_696615.1	identified by match to protein family HMM PF00753
YP_696616.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_696617.1	identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_696618.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_696619.1	identified by match to protein family HMM PF01368
YP_696620.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_696621.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_696622.1	identified by match to protein family HMM PF04055
YP_696624.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_696625.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_696626.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_696627.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_696628.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_696629.1	identified by similarity to PIR:T44357
YP_696630.1	in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_696631.1	in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_696632.1	identified by similarity to GB:AAP10275.1
YP_696633.1	identified by similarity to SP:P04252; match to protein family HMM PF00042
YP_696634.1	identified by similarity to SP:Q9ZNK0; match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_696635.1	identified by similarity to GB:AAO36701.1; match to protein family HMM PF01205; match to protein family HMM TIGR00257
YP_696636.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_696637.1	identified by match to protein family HMM PF01909
YP_696639.1	identified by match to protein family HMM PF01926
YP_696640.1	identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_696641.1	identified by similarity to PIR:T44346; match to protein family HMM TIGR02832
YP_696642.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_696643.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_696645.1	identified by match to protein family HMM PF00583
YP_696646.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_696647.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187
YP_696648.1	identified by similarity to SP:P23860; match to protein family HMM PF00528
YP_696649.1	identified by match to protein family HMM PF00528
YP_696650.1	identified by similarity to SP:P23861; match to protein family HMM PF01547
YP_696651.1	identified by similarity to SP:Q59636; match to protein family HMM PF00334
YP_696652.1	identified by similarity to SP:O35031; match to protein family HMM PF00708
YP_696655.1	identified by match to protein family HMM PF00768
YP_696656.1	hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation
YP_696657.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_696658.1	identified by match to protein family HMM PF00515
YP_696659.1	identified by match to protein family HMM PF03788
YP_696660.1	identified by match to protein family HMM PF04172
YP_696662.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01751
YP_696663.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_696664.1	identified by similarity to GB:AAF24291.1; match to protein family HMM PF03073
YP_696665.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_696666.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_696667.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_696668.1	identified by match to protein family HMM PF00561
YP_696669.1	identified by similarity to PIR:H97195
YP_696670.1	identified by match to protein family HMM PF01270
YP_696671.1	identified by match to protein family HMM PF01464
YP_696672.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_696673.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_696674.1	catalyzes the formation of glutamate from glutamine
YP_696676.1	identified by similarity to SP:P24828; match to protein family HMM PF02073
YP_696677.1	identified by similarity to GB:AAO35390.1
YP_696678.1	identified by similarity to GB:AAO35389.1
YP_696681.1	identified by match to protein family HMM PF04055
YP_696683.1	identified by similarity to SP:P33022; match to protein family HMM PF01156
YP_696684.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_696685.1	identified by similarity to PIR:F97060; match to protein family HMM PF04816
YP_696687.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_696688.1	synthesizes RNA primers at the replication forks
YP_696689.1	dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_696690.1	identified by similarity to SP:P46914; match to protein family HMM TIGR02906
YP_696691.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_696692.1	identified by match to protein family HMM PF00571
YP_696693.1	identified by match to protein family HMM PF00627
YP_696694.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_696695.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_696696.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_696697.1	identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569
YP_696698.1	identified by similarity to SP:Q8RB52; match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_696699.1	identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277
YP_696700.1	identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876
YP_696701.1	identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856
YP_696702.1	identified by match to protein family HMM PF02637
YP_696703.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_696704.1	identified by match to protein family HMM PF01230
YP_696705.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_696706.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_696707.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_696708.1	identified by match to protein family HMM PF00392
YP_696711.1	identified by match to protein family HMM PF00005
YP_696712.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_696713.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_696714.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_696715.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_696716.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_696718.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_696720.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_696721.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_696722.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_696723.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_696724.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_696725.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_696726.1	identified by similarity to SP:P40869; match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_696727.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_696728.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_696729.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_696730.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886
YP_696731.1	identified by match to protein family HMM PF05362
YP_696732.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_696733.1	identified by similarity to GB:AAO36186.1
YP_696734.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_696735.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_696736.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_696737.1	identified by similarity to PIR:F97174
YP_696738.1	identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788
YP_696740.1	identified by match to protein family HMM PF00324
YP_696741.1	identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780; match to protein family HMM TIGR02176
YP_696742.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_696743.2	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_696744.1	identified by similarity to PIR:JN0082; match to protein family HMM PF00269
YP_696745.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_696746.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_696747.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383
YP_696748.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_696749.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_696750.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_696751.1	identified by match to protein family HMM PF00535
YP_696752.1	identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629
YP_696753.1	identified by match to protein family HMM TIGR02840
YP_696754.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_696755.1	identified by match to protein family HMM PF00324
YP_696756.1	identified by similarity to SP:Q9F234; match to protein family HMM PF01055
YP_696757.1	identified by match to protein family HMM PF00480
YP_696758.1	identified by similarity to SP:P37966; match to protein family HMM PF01547
YP_696760.1	identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748
YP_696761.1	identified by match to protein family HMM PF00528
YP_696762.1	identified by match to protein family HMM PF00528
YP_696763.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_696764.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_696765.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_696766.1	identified by similarity to PDB:1O8N_A; match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_696767.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_696768.1	identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580
YP_696770.1	identified by match to protein family HMM PF02388
YP_696771.1	identified by match to protein family HMM PF03551
YP_696772.1	identified by similarity to SP:P54954; match to protein family HMM PF00005
YP_696773.1	identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_696774.1	identified by match to protein family HMM PF00037
YP_696775.1	identified by similarity to PIR:A75034; match to protein family HMM PF01934
YP_696778.1	identified by similarity to GB:BAA78774.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_696779.1	identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_696781.1	identified by similarity to PIR:A96991; match to protein family HMM PF04456
YP_696782.1	identified by match to protein family HMM PF00271
YP_696783.1	identified by match to protein family HMM PF05175; match to protein family HMM PF06325
YP_696784.1	identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456
YP_696785.1	identified by similarity to GB:AAM25615.1; match to protein family HMM PF07009
YP_696786.1	identified by similarity to SP:P41780; match to protein family HMM PF02424
YP_696787.1	identified by similarity to GB:AAO36386.1; match to protein family HMM PF07550
YP_696789.1	identified by similarity to GB:AAO81374.1
YP_696790.1	identified by match to protein family HMM PF07690
YP_696791.1	identified by match to protein family HMM PF00082
YP_696792.2	identified by match to protein family HMM PF00082
YP_696793.1	identified by match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_696795.1	identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475
YP_696796.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_696797.1	Selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476
YP_696798.1	identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_696799.1	identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943
YP_696800.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_696801.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_696802.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488
YP_696803.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_696804.1	identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_696805.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_696806.1	involved in the peptidyltransferase reaction during translation
YP_696807.1	identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327
YP_696808.1	identified by similarity to SP:P26908; match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_696809.1	identified by similarity to SP:P25537; match to protein family HMM TIGR00757
YP_696810.1	identified by similarity to GB:AAO36563.1
YP_696811.1	identified by match to protein family HMM PF04055
YP_696812.1	identified by match to protein family HMM PF02163
YP_696814.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_696815.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_696816.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_696817.1	blocks the formation of polar Z-ring septums
YP_696818.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_696819.1	identified by match to protein family HMM PF04093
YP_696820.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_696821.1	functions in MreBCD complex in some organisms
YP_696822.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_696823.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_696824.1	identified by similarity to GB:AAO36576.1; match to protein family HMM PF05036
YP_696825.1	identified by similarity to GB:AAM71574.1; match to protein family HMM PF02811
YP_696826.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_696827.1	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_696828.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_696829.1	identified by match to protein family HMM PF00403
YP_696830.1	identified by match to protein family HMM PF03883
YP_696831.1	identified by match to protein family HMM PF00571
YP_696832.1	identified by match to protein family HMM PF00929
YP_696833.1	identified by similarity to GB:BAD77579.1; match to protein family HMM PF03235; match to protein family HMM PF07510
YP_696834.1	identified by match to protein family HMM PF00488
YP_696835.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002
YP_696836.1	identified by similarity to SP:Q8CWN2; match to protein family HMM PF01297
YP_696838.1	identified by similarity to SP:P62134
YP_696839.1	identified by match to protein family HMM PF00149
YP_696840.1	identified by similarity to SP:P41371; match to protein family HMM PF00269
YP_696841.1	identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167
YP_696842.1	identified by match to protein family HMM PF00571
YP_696843.1	identified by similarity to PIR:C97249; match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_696844.1	identified by match to protein family HMM PF00814
YP_696845.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_696847.1	identified by match to protein family HMM PF00575
YP_696848.1	identified by match to protein family HMM PF04389
YP_696849.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_696850.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_696851.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_696854.1	identified by match to protein family HMM TIGR01448
YP_696855.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_696856.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_696858.1	identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_696859.1	identified by similarity to SP:P39751; match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_696860.1	identified by similarity to SP:P15281; match to protein family HMM TIGR02844
YP_696861.1	identified by match to protein family HMM PF01551
YP_696862.1	identified by similarity to SP:P07372; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870
YP_696863.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_696864.1	identified by similarity to PIR:C97252
YP_696865.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_696866.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_696867.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_696868.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_696869.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_696870.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_696871.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_696872.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_696874.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_696875.1	identified by similarity to SP:P39131; match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_696876.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_696877.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_696878.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_696879.1	identified by similarity to PIR:G97254
YP_696880.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_696881.1	identified by match to protein family HMM PF05175; match to protein family HMM PF07136; match to protein family HMM TIGR00536
YP_696882.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_696883.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_696884.1	identified by match to protein family HMM PF06925
YP_696885.2	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_696886.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_696887.1	identified by similarity to GB:AAO34936.1
YP_696888.1	identified by match to protein family HMM PF02568
YP_696889.1	identified by similarity to SP:P39151; match to protein family HMM TIGR02837
YP_696890.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_696891.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_696892.1	identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069
YP_696893.1	identified by match to protein family HMM PF01476
YP_696894.1	identified by match to protein family HMM PF06257
YP_696895.1	identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855
YP_696896.1	identified by similarity to SP:P46914; match to protein family HMM PF01636; match to protein family HMM TIGR02906
YP_696897.1	identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534
YP_696898.1	identified by similarity to SP:P46914; match to protein family HMM PF01633; match to protein family HMM TIGR02906
YP_696899.1	identified by similarity to GB:AAO34914.1
YP_696900.1	identified by similarity to SP:P46914; match to protein family HMM TIGR02906
YP_696901.1	identified by match to protein family HMM PF00534
YP_696902.1	identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456
YP_696903.1	identified by similarity to GB:CAC98014.1; match to protein family HMM PF07009
YP_696904.1	identified by similarity to SP:P16055; match to protein family HMM PF04205
YP_696905.1	identified by match to protein family HMM PF02424
YP_696906.1	identified by match to protein family HMM PF04346
YP_696907.1	identified by match to protein family HMM PF02302
YP_696908.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_696909.1	identified by match to protein family HMM PF00561
YP_696910.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_696911.1	identified by match to protein family HMM PF05866
YP_696912.1	identified by similarity to SP:P29679; match to protein family HMM PF00657
YP_696913.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_696914.1	identified by similarity to GB:AAM25067.1; match to protein family HMM PF01206
YP_696915.1	identified by match to protein family HMM PF00884
YP_696917.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_696918.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_696919.1	identified by match to protein family HMM PF02417
YP_696920.1	identified by match to protein family HMM PF02417
YP_696921.1	identified by similarity to GB:AAP09835.1
YP_696923.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_696924.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_696925.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_696926.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_696927.1	identified by similarity to PIR:B97228
YP_696928.1	identified by match to protein family HMM PF00496
YP_696930.1	identified by similarity to PIR:D97228
YP_696931.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_696932.1	identified by similarity to SP:P56255; match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_696935.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_696936.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_696937.1	identified by match to protein family HMM PF07495
YP_696939.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_696940.1	identified by similarity to GB:BAD71068.1
YP_696941.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_696942.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_696943.1	identified by similarity to SP:P94312; match to protein family HMM PF00528
YP_696944.1	identified by similarity to SP:P42062; match to protein family HMM PF00528
YP_696945.1	identified by similarity to SP:P42061; match to protein family HMM PF00496
YP_696946.1	identified by match to protein family HMM PF07690
YP_696947.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_696948.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_696950.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_696955.1	identified by similarity to PIR:S77726; match to protein family HMM TIGR01175
YP_696956.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_696957.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_696958.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_696959.1	identified by match to protein family HMM PF00482
YP_696960.1	identified by match to protein family HMM PF00437; match to protein family HMM PF05157
YP_696961.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_696962.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_696963.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_696964.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_696965.1	identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906
YP_696966.1	identified by similarity to GB:AAV96664.1
YP_696967.1	identified by match to protein family HMM PF00730; match to protein family HMM PF07934
YP_696968.1	identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909
YP_696969.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228
YP_696970.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_696971.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_696972.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_696973.1	identified by match to protein family HMM PF01012
YP_696974.1	identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_696975.1	catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA
YP_696976.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_696977.1	identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_696978.1	identified by similarity to SP:Q56405; match to protein family HMM PF01022
YP_696979.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02080
YP_696980.1	identified by similarity to PIR:B97000
YP_696982.1	identified by similarity to SP:Q07024
YP_696983.1	identified by similarity to GB:AAL94212.1
YP_696984.1	identified by similarity to GB:CAD77645.1
YP_696985.1	identified by similarity to GB:AAP24370.1; match to protein family HMM PF01863
YP_696986.1	identified by similarity to GB:AAM00850.1; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348
YP_696987.1	identified by similarity to GB:AAS39764.1
YP_696988.1	identified by match to protein family HMM PF01420
YP_696989.1	identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497
YP_696991.1	identified by similarity to SP:P06533; match to protein family HMM PF01381
YP_696993.1	identified by match to protein family HMM PF00239
YP_696994.1	identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508
YP_696996.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_696997.1	identified by match to protein family HMM PF02163
YP_696998.1	identified by match to protein family HMM PF00483
YP_696999.1	identified by match to protein family HMM PF00232
YP_697000.1	identified by match to protein family HMM PF00171
YP_697001.1	identified by similarity to GB:AAO36364.1
YP_697002.1	identified by similarity to GB:AAP11025.1
YP_697003.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_697005.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_697006.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_697007.1	identified by match to protein family HMM PF03553
YP_697008.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_697010.1	identified by similarity to PIR:F97027
YP_697011.1	identified by match to protein family HMM PF00657
YP_697012.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_697013.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_697014.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_697015.1	identified by similarity to PIR:B97349
YP_697017.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_697018.1	identified by match to protein family HMM PF02915
YP_697019.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_697020.1	identified by similarity to GB:AAO79146.1
YP_697021.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_697022.1	identified by similarity to PIR:A96964; match to protein family HMM PF07561
YP_697023.1	identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531
YP_697024.1	identified by similarity to GB:AAM05996.1; match to protein family HMM PF01987
YP_697025.1	identified by match to protein family HMM PF06202; match to protein family HMM TIGR01561
YP_697026.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093
YP_697027.1	amylomaltase; acts to release glucose from maltodextrins
YP_697028.1	identified by match to protein family HMM PF01055
YP_697029.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_697030.1	identified by similarity to SP:Q04699; match to protein family HMM PF00528
YP_697031.1	identified by similarity to SP:P02916; match to protein family HMM PF00528
YP_697032.1	identified by similarity to SP:P19576; match to protein family HMM PF01547
YP_697033.1	identified by similarity to PIR:H97297
YP_697034.1	identified by similarity to SP:P77481; match to protein family HMM PF00005; match to protein family HMM PF03459
YP_697035.1	identified by similarity to GB:BAD29951.1; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512
YP_697036.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_697037.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_697038.1	identified by similarity to PIR:F97278; match to protein family HMM PF01266; match to protein family HMM PF07992
YP_697039.1	identified by similarity to PIR:G97278; match to protein family HMM PF07949
YP_697040.1	identified by similarity to PIR:H97278; match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_697041.1	identified by similarity to PIR:A97279
YP_697042.1	identified by similarity to SP:P50739; match to protein family HMM PF07486
YP_697043.1	identified by match to protein family HMM PF01134; match to protein family HMM PF07992
YP_697044.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_697045.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975
YP_697046.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_697047.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_697048.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_697050.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_697051.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_697052.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_697053.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_697054.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_697055.1	identified by similarity to GB:AAM24676.1; match to protein family HMM PF02588
YP_697056.1	identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883
YP_697057.1	identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_697058.1	forms a direct contact with the tRNA during translation
YP_697059.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_697060.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_697061.1	identified by match to protein family HMM PF02361
YP_697062.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_697063.1	with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene
YP_697064.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_697065.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_697066.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_697067.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_697068.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_697069.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_697070.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_697071.1	identified by similarity to PIR:G97282
YP_697072.1	identified by similarity to SP:P19994; match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_697073.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_697074.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_697075.1	late assembly protein
YP_697076.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_697077.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_697078.1	binds 5S rRNA along with protein L5 and L25
YP_697079.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_697080.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_697081.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_697082.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_697083.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_697084.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_697085.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_697086.1	one of the stabilizing components for the large ribosomal subunit
YP_697087.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_697088.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_697089.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_697090.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_697091.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_697092.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_697093.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_697094.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_697095.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_697096.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_697097.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_697098.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_697099.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_697101.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_697102.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_697103.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_697104.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_697105.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_697106.1	binds directly to 23S ribosomal RNA
YP_697107.1	Modulates Rho-dependent transcription termination
YP_697108.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_697109.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_697110.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_697111.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_697112.1	identified by similarity to GB:AAO37069.1; match to protein family HMM PF05991
YP_697113.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_697114.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_697115.2	identified by similarity to PIR:B97288; match to protein family HMM PF00636
YP_697116.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_697117.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_697118.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_697119.1	identified by match to protein family HMM PF01850; match to protein family HMM PF01938
YP_697120.1	identified by similarity to GB:AAO37078.1
YP_697121.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_697122.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_697123.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_697125.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_697126.1	identified by similarity to SP:Q59931; match to protein family HMM PF00171
YP_697127.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_697128.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992
YP_697129.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_697130.1	identified by match to protein family HMM PF00217
YP_697131.1	identified by similarity to PIR:E97292
YP_697132.1	identified by match to protein family HMM PF05848
YP_697134.1	identified by similarity to GB:AAL56990.1; match to protein family HMM PF02875
YP_697135.1	identified by similarity to SP:P22846; match to protein family HMM PF00037
YP_697136.1	identified by match to protein family HMM PF04468
YP_697137.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_697138.1	identified by similarity to PIR:E96936; match to protein family HMM PF06153
YP_697140.1	identified by similarity to PIR:D96936
YP_697141.2	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_697142.1	identified by similarity to SP:P37534
YP_697144.1	identified by similarity to GB:AAO34865.1
YP_697145.1	identified by match to protein family HMM PF01544
YP_697146.1	identified by match to protein family HMM PF02016
YP_697147.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_697148.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_697149.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_697150.1	identified by match to protein family HMM PF02016
YP_697151.1	identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883
YP_697152.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_697153.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_697154.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_697155.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_697156.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_697157.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_697158.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_697159.1	identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_697160.2	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_697161.1	identified by similarity to SP:P37475; match to protein family HMM PF07228; match to protein family HMM TIGR02865
YP_697162.1	identified by match to protein family HMM PF00575
YP_697163.1	identified by match to protein family HMM PF04977
YP_697164.1	identified by similarity to PIR:E97294; match to protein family HMM TIGR02893
YP_697165.1	identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892
YP_697166.1	identified by match to protein family HMM PF01479
YP_697167.1	identified by similarity to SP:P02346; match to protein family HMM PF00216
YP_697168.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444
YP_697169.1	identified by match to protein family HMM PF01943
YP_697170.1	identified by similarity to SP:P37554; match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851
YP_697171.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_697172.1	identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_697173.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_697174.1	identified by match to protein family HMM PF00595
YP_697175.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_697176.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_697177.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_697178.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_697179.1	identified by similarity to SP:P37551; match to protein family HMM PF00156; match to protein family HMM TIGR01743
YP_697180.2	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_697181.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_697182.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_697183.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_697184.2	identified by match to protein family HMM PF00557
YP_697185.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_697186.1	identified by match to protein family HMM PF00173
YP_697187.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_697188.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_697190.1	identified by similarity to GB:AAD00216.1; match to protein family HMM PF04055; match to protein family HMM TIGR02491
YP_697191.1	identified by match to protein family HMM PF01966
YP_697192.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_697193.1	catalyzes the formation of inosine from adenosine
YP_697194.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_697195.1	identified by similarity to GB:BAC12708.1
YP_697196.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_697197.1	identified by match to protein family HMM PF03551
YP_697198.1	identified by similarity to SP:P29604
YP_697199.1	identified by similarity to SP:P53381
YP_697200.1	identified by similarity to GB:AAO34898.1
YP_697201.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_697202.1	identified by similarity to GB:AAO34896.1
YP_697203.1	identified by similarity to PIR:C97267
YP_697204.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_697205.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_697206.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501
YP_697207.1	identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010
YP_697208.1	identified by similarity to PIR:AC1723; match to protein family HMM PF04286
YP_697209.1	identified by match to protein family HMM PF00027
YP_697210.1	identified by match to protein family HMM TIGR00398
YP_697211.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_697212.1	identified by similarity to GB:AAO35783.1
YP_697214.1	identified by match to protein family HMM PF03553
YP_697216.1	identified by match to protein family HMM PF03109
YP_697217.1	identified by similarity to PIR:B96904
YP_697218.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_697219.1	identified by similarity to SP:P33744; match to protein family HMM PF00171; match to protein family HMM PF00465
YP_697220.1	identified by similarity to SP:P35158; match to protein family HMM PF07670
YP_697221.1	identified by similarity to SP:P35157; match to protein family HMM PF07670
YP_697222.1	identified by similarity to GB:BAB67566.1
YP_697223.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_697225.1	identified by match to protein family HMM PF02683
YP_697227.1	identified by similarity to SP:P25144; match to protein family HMM PF00356; match to protein family HMM PF00532
YP_697228.1	identified by match to protein family HMM PF00581
YP_697229.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_697230.1	identified by match to protein family HMM PF04324
YP_697232.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02463
YP_697233.1	identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357
YP_697234.1	identified by similarity to SP:P25052; match to protein family HMM PF03070
YP_697236.1	identified by match to protein family HMM PF01170
YP_697237.1	identified by similarity to PIR:B97063; match to protein family HMM PF07892
YP_697238.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_697239.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_697240.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_697241.1	identified by similarity to SP:P30300; match to protein family HMM PF04309
YP_697242.1	identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_697245.1	catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate
YP_697246.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_697249.1	identified by similarity to PIR:I40824; match to protein family HMM PF01471
YP_697250.1	identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082
YP_697251.1	identified by similarity to GB:BAB60712.1; match to protein family HMM PF00082
YP_697252.1	identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082
YP_697253.1	identified by match to protein family HMM PF00717; match to protein family HMM PF01381
YP_697255.1	identified by match to protein family HMM PF00160
YP_697256.1	identified by similarity to PIR:A97230
YP_697257.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_697258.1	identified by match to protein family HMM PF00120
YP_697259.1	identified by similarity to PIR:H96953
YP_697260.1	identified by match to protein family HMM PF04892
YP_697261.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_697262.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_697263.1	identified by similarity to GB:AAO35287.1
YP_697264.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_697265.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_697266.1	identified by match to protein family HMM PF02255
YP_697267.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_697268.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_697269.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_697270.1	identified by match to protein family HMM PF00106
YP_697271.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_697273.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_697274.2	identified by match to protein family HMM PF07670
YP_697275.1	identified by similarity to PIR:G97319
YP_697276.1	identified by match to protein family HMM PF00132
YP_697277.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_697278.1	identified by match to protein family HMM PF02384
YP_697279.1	identified by similarity to SP:P49022
YP_697280.1	identified by similarity to SP:P49022
YP_697281.1	identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686
YP_697283.1	identified by similarity to GB:BAC60887.1
YP_697284.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_697285.1	identified by similarity to PIR:H97140
YP_697286.1	identified by similarity to GB:AAS40903.1
YP_697287.1	identified by match to protein family HMM TIGR01167
YP_697289.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_697290.2	identified by similarity to PIR:A96978
YP_697291.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_697292.1	identified by similarity to GB:AAO75282.1
YP_697293.1	identified by similarity to PIR:C97100; match to protein family HMM PF06555
YP_697294.1	identified by match to protein family HMM PF02810
YP_697296.1	identified by match to protein family HMM PF00753
YP_697297.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_697298.1	identified by similarity to GB:AAO34821.1
YP_697299.1	identified by similarity to GB:AAO34793.1
YP_697300.1	identified by match to protein family HMM PF04657
YP_697301.1	identified by match to protein family HMM PF00082
YP_697302.1	identified by match to protein family HMM PF01551; match to protein family HMM PF07501
YP_697303.1	identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_697304.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_697306.1	identified by match to protein family HMM PF03486; match to protein family HMM PF07992
YP_697307.1	identified by match to protein family HMM PF01643
YP_697308.1	identified by match to protein family HMM PF01643
YP_697309.1	identified by match to protein family HMM PF00301; match to protein family HMM PF02915
YP_697311.1	identified by match to protein family HMM PF00293
YP_697312.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_697313.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_697314.1	identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_697315.1	identified by match to protein family HMM PF01380
YP_697316.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_697317.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_697319.1	identified by match to protein family HMM PF03610
YP_697320.1	identified by similarity to SP:P08188; match to protein family HMM PF03613
YP_697321.1	identified by similarity to SP:P08187; match to protein family HMM PF03609
YP_697322.1	identified by match to protein family HMM PF03830
YP_697323.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_697324.1	unwinds double stranded DNA
YP_697325.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903
YP_697326.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_697327.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_697329.1	identified by similarity to PIR:E97356
YP_697330.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_697331.1	identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_697332.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_697333.1	identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107
YP_697334.1	identified by match to protein family HMM PF00924
YP_697335.1	identified by similarity to GB:AAM24878.1
YP_697336.1	identified by match to protein family HMM PF01810
YP_697337.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977
YP_697338.1	identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872
YP_697339.1	identified by similarity to GB:AAO34757.1; match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_697340.1	identified by similarity to GB:AAO34756.1
YP_697341.1	identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_697342.1	identified by match to protein family HMM PF01656
YP_697343.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_697345.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_697346.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_697347.1	identified by similarity to SP:Q01620; match to protein family HMM PF01424
YP_697348.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_697349.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_697350.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_697351.1	in Escherichia coli transcription of this gene is enhanced by polyamines