-- dump date 20140619_044928 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 195103000001 SEQ_END SEQ_END NC_008261.1 3256683 3256683 DR NC_008261.1; contig end 3256683..3256683 Clostridium perfringens ATCC 13124 YP_694476.1 CDS dnaA NC_008261.1 411 1784 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 411..1784 Clostridium perfringens ATCC 13124 4202657 YP_694477.1 CDS dnaN NC_008261.1 2079 3179 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2079..3179 Clostridium perfringens ATCC 13124 4202178 YP_694478.1 CDS CPF_0003 NC_008261.1 3305 3511 D identified by match to protein family HMM PF01479; S4 domain-containing protein 3305..3511 Clostridium perfringens ATCC 13124 4201729 YP_694479.1 CDS recF NC_008261.1 3567 4652 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3567..4652 Clostridium perfringens ATCC 13124 4201736 YP_694480.1 CDS CPF_0005 NC_008261.1 4666 4926 D identified by similarity to PIR:T46554; hypothetical protein 4666..4926 Clostridium perfringens ATCC 13124 4202767 YP_694481.1 CDS gyrB NC_008261.1 5163 7079 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5163..7079 Clostridium perfringens ATCC 13124 4202552 YP_694482.1 CDS gyrA NC_008261.1 7101 9620 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 7101..9620 Clostridium perfringens ATCC 13124 4202791 YP_694483.1 CDS CPF_0010 NC_008261.1 15422 15925 D identified by similarity to GB:AAO34741.1; hypothetical protein 15422..15925 Clostridium perfringens ATCC 13124 4202615 YP_694484.1 CDS CPF_0011 NC_008261.1 16274 19030 D identified by match to protein family HMM PF03699; hypothetical protein 16274..19030 Clostridium perfringens ATCC 13124 4202709 YP_694485.1 CDS CPF_0012 NC_008261.1 19273 20667 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 19273..20667 Clostridium perfringens ATCC 13124 4201427 YP_694486.1 CDS CPF_0013 NC_008261.1 20680 20913 D identified by similarity to PIR:E96901; hypothetical protein 20680..20913 Clostridium perfringens ATCC 13124 4203205 YP_694487.1 CDS serS NC_008261.1 21265 22542 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 21265..22542 Clostridium perfringens ATCC 13124 4201853 YP_694488.1 CDS CPF_0015 NC_008261.1 22719 23138 D hypothetical protein 22719..23138 Clostridium perfringens ATCC 13124 4203300 YP_694489.1 CDS CPF_0018 NC_008261.1 23755 24021 D hypothetical protein 23755..24021 Clostridium perfringens ATCC 13124 4202497 YP_694490.1 CDS CPF_0021 NC_008261.1 24351 24533 R hypothetical protein complement(24351..24533) Clostridium perfringens ATCC 13124 4203533 YP_694491.1 CDS CPF_0022 NC_008261.1 24771 25652 D identified by similarity to GB:AAO36323.1; hypothetical protein 24771..25652 Clostridium perfringens ATCC 13124 4203812 YP_694492.1 CDS CPF_0023 NC_008261.1 25741 25905 R hypothetical protein complement(25741..25905) Clostridium perfringens ATCC 13124 4203322 YP_694493.1 CDS addB NC_008261.1 26114 29590 D identified by similarity to SP:P23477; match to protein family HMM TIGR02773; ATP-dependent nuclease subunit B 26114..29590 Clostridium perfringens ATCC 13124 4201143 YP_694494.1 CDS addA NC_008261.1 29580 33395 D identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR02785; ATP-dependent nuclease subunit A 29580..33395 Clostridium perfringens ATCC 13124 4202627 YP_694495.1 CDS CPF_0026 NC_008261.1 33434 34708 R identified by match to protein family HMM PF01743; poly(A) polymerase complement(33434..34708) Clostridium perfringens ATCC 13124 4202400 YP_694496.1 CDS yhaM NC_008261.1 34839 35810 D identified by similarity to SP:O07521; match to protein family HMM PF01336; match to protein family HMM PF01966; 3'-5' exoribonuclease 34839..35810 Clostridium perfringens ATCC 13124 4202828 YP_694497.1 CDS CPF_0028 NC_008261.1 35842 37002 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(35842..37002) Clostridium perfringens ATCC 13124 4203738 YP_694498.1 CDS pepT NC_008261.1 37194 38414 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 37194..38414 Clostridium perfringens ATCC 13124 4203802 YP_694499.1 CDS CPF_0030 NC_008261.1 38520 39395 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein complement(38520..39395) Clostridium perfringens ATCC 13124 4203321 YP_694500.1 CDS CPF_0032 NC_008261.1 39832 40971 D hypothetical protein 39832..40971 Clostridium perfringens ATCC 13124 4201778 YP_694501.1 CDS psd NC_008261.1 41086 41970 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(41086..41970) Clostridium perfringens ATCC 13124 4201686 YP_694502.1 CDS CPF_0034 NC_008261.1 42133 42702 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 42133..42702 Clostridium perfringens ATCC 13124 4203017 YP_694503.1 CDS CPF_0036 NC_008261.1 42977 44242 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 42977..44242 Clostridium perfringens ATCC 13124 4203577 YP_694504.1 CDS CPF_0037 NC_008261.1 44245 44676 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 44245..44676 Clostridium perfringens ATCC 13124 4201367 YP_694505.1 CDS CPF_0038 NC_008261.1 44754 45197 D hypothetical protein 44754..45197 Clostridium perfringens ATCC 13124 4203711 YP_694506.1 CDS CPF_0039 NC_008261.1 45310 45675 D identified by similarity to GB:AAO79590.1; hypothetical protein 45310..45675 Clostridium perfringens ATCC 13124 4201498 YP_694507.1 CDS CPF_0040 NC_008261.1 45836 46447 D identified by similarity to GB:AAO35771.1; hypothetical protein 45836..46447 Clostridium perfringens ATCC 13124 4202675 YP_694508.1 CDS CPF_0041 NC_008261.1 46559 48031 R identified by similarity to GB:AAS42428.1; match to protein family HMM PF02696; hypothetical protein complement(46559..48031) Clostridium perfringens ATCC 13124 4203684 YP_694509.1 CDS plc NC_008261.1 48363 49559 D identified by similarity to SP:P15310; match to protein family HMM PF00882; phospholipase C 48363..49559 Clostridium perfringens ATCC 13124 4201274 YP_694510.1 CDS CPF_0043 NC_008261.1 49747 50673 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; CobW/P47K family protein 49747..50673 Clostridium perfringens ATCC 13124 4201104 YP_694511.1 CDS CPF_0044 NC_008261.1 50693 51277 D identified by similarity to GB:AAO35532.1; hypothetical protein 50693..51277 Clostridium perfringens ATCC 13124 4201205 YP_694512.2 CDS CPF_0045 NC_008261.1 51280 52173 D identified by match to protein family HMM PF03773; permease 51280..52173 Clostridium perfringens ATCC 13124 4202936 YP_694513.1 CDS CPF_0046 NC_008261.1 52186 52905 D identified by similarity to PIR:C97096; hypothetical protein 52186..52905 Clostridium perfringens ATCC 13124 4201943 YP_694514.1 CDS lgt NC_008261.1 53171 53959 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 53171..53959 Clostridium perfringens ATCC 13124 4201323 YP_694515.1 CDS CPF_0049 NC_008261.1 54732 55235 D lipoprotein 54732..55235 Clostridium perfringens ATCC 13124 4203395 YP_694516.1 CDS brnQ NC_008261.1 55675 56961 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 55675..56961 Clostridium perfringens ATCC 13124 4201771 YP_694517.1 CDS folA NC_008261.1 57107 57592 R identified by similarity to SP:P11045; match to protein family HMM PF00186; dihydrofolate reductase complement(57107..57592) Clostridium perfringens ATCC 13124 4203933 YP_694518.1 CDS dnaX NC_008261.1 57783 59426 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 57783..59426 Clostridium perfringens ATCC 13124 4202845 YP_694519.1 CDS CPF_0053 NC_008261.1 59538 59876 D identified by similarity to SP:Q97MR5; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 59538..59876 Clostridium perfringens ATCC 13124 4201814 YP_694520.1 CDS recR NC_008261.1 59974 60570 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 59974..60570 Clostridium perfringens ATCC 13124 4203304 YP_694521.1 CDS CPF_0055 NC_008261.1 60796 61074 D identified by similarity to GB:AAM23356.1; hypothetical protein 60796..61074 Clostridium perfringens ATCC 13124 4202808 YP_694522.1 CDS bofA NC_008261.1 61090 61368 D identified by similarity to GB:BAB79755.1; match to protein family HMM TIGR02862; sigma-K factor processing regulatory protein BofA 61090..61368 Clostridium perfringens ATCC 13124 4201139 YP_694523.1 CDS CPF_0057 NC_008261.1 61643 62788 D hypothetical protein 61643..62788 Clostridium perfringens ATCC 13124 4203893 YP_694524.1 CDS CPF_0058 NC_008261.1 62939 63118 D hypothetical protein 62939..63118 Clostridium perfringens ATCC 13124 4202017 YP_694525.1 CDS CPF_0059 NC_008261.1 63187 63369 D hypothetical protein 63187..63369 Clostridium perfringens ATCC 13124 4201626 YP_694526.1 CDS CPF_0060 NC_008261.1 63533 64609 D identified by match to protein family HMM PF00266; class V aminotransferase 63533..64609 Clostridium perfringens ATCC 13124 4200973 YP_694527.1 CDS CPF_0061 NC_008261.1 64678 65583 D identified by similarity to SP:P35136; match to protein family HMM PF00389; match to protein family HMM PF02826; D-3-phosphoglycerate dehydrogenase 64678..65583 Clostridium perfringens ATCC 13124 4201445 YP_694528.1 CDS CPF_0062 NC_008261.1 65733 66989 D identified by similarity to PIR:H96901; match to protein family HMM PF06245; hypothetical protein 65733..66989 Clostridium perfringens ATCC 13124 4201088 YP_694529.1 CDS mtnN NC_008261.1 67045 67740 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(67045..67740) Clostridium perfringens ATCC 13124 4201881 YP_694530.1 CDS CPF_0064 NC_008261.1 68118 68879 D identified by match to protein family HMM PF00899; HesA/MoeB/ThiF family protein 68118..68879 Clostridium perfringens ATCC 13124 4203406 YP_694531.1 CDS CPF_0065 NC_008261.1 69170 70336 D identified by match to protein family HMM PF07690; major facilitator family transporter 69170..70336 Clostridium perfringens ATCC 13124 4203806 YP_694532.1 CDS CPF_0066 NC_008261.1 70715 71299 D identified by similarity to SP:P09454; match to protein family HMM PF00583; acetyltransferase 70715..71299 Clostridium perfringens ATCC 13124 4203118 YP_694533.1 CDS CPF_0067 NC_008261.1 71391 72002 D identified by similarity to SP:Q59484; match to protein family HMM PF01712; deoxyguanosine kinase/deoxyadenosine kinase 71391..72002 Clostridium perfringens ATCC 13124 4203056 YP_694534.1 CDS CPF_0069 NC_008261.1 77726 78574 D identified by similarity to SP:P15401; match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 77726..78574 Clostridium perfringens ATCC 13124 4203846 YP_694535.1 CDS CPF_0070 NC_008261.1 78607 79086 R identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, N-acetylglucosamine-specific IIA component complement(78607..79086) Clostridium perfringens ATCC 13124 4202486 YP_694536.1 CDS nagE NC_008261.1 79744 81189 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 79744..81189 Clostridium perfringens ATCC 13124 4201497 YP_694537.1 CDS CPF_0072 NC_008261.1 81258 81776 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(81258..81776) Clostridium perfringens ATCC 13124 4203202 YP_694538.1 CDS fusA NC_008261.1 87896 89986 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 87896..89986 Clostridium perfringens ATCC 13124 4201275 YP_694539.1 CDS CPF_0075 NC_008261.1 90409 90645 D identified by similarity to PIR:G97292; hypothetical protein 90409..90645 Clostridium perfringens ATCC 13124 4203915 YP_694540.1 CDS CPF_0076 NC_008261.1 90897 91844 D identified by similarity to SP:P54495; match to protein family HMM PF00480; glucokinase 90897..91844 Clostridium perfringens ATCC 13124 4202124 YP_694541.1 CDS CPF_0077 NC_008261.1 92386 92928 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 92386..92928 Clostridium perfringens ATCC 13124 4201932 YP_694542.1 CDS CPF_0078 NC_008261.1 93261 93884 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 93261..93884 Clostridium perfringens ATCC 13124 4201824 YP_694543.1 CDS CPF_0079 NC_008261.1 94243 95013 R identified by similarity to SP:P46337; match to protein family HMM PF00455; match to protein family HMM PF08220; transcriptional regulator IolR complement(94243..95013) Clostridium perfringens ATCC 13124 4202189 YP_694544.1 CDS CPF_0080 NC_008261.1 95495 96649 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 95495..96649 Clostridium perfringens ATCC 13124 4200962 YP_694545.1 CDS CPF_0081 NC_008261.1 96656 97501 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 96656..97501 Clostridium perfringens ATCC 13124 4201661 YP_694546.1 CDS CPF_0082 NC_008261.1 97515 98531 D identified by similarity to SP:P42414; match to protein family HMM PF00294; myo-inositol catabolism protein IolC 97515..98531 Clostridium perfringens ATCC 13124 4203947 YP_694547.1 CDS CPF_0083 NC_008261.1 98545 99312 D identified by similarity to SP:P42413; match to protein family HMM PF06845; myo-inositol catabolism protein IolB 98545..99312 Clostridium perfringens ATCC 13124 4201695 YP_694548.1 CDS iolD NC_008261.1 99329 101248 D identified by similarity to SP:P42415; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; myo-inositol catabolism protein IolD 99329..101248 Clostridium perfringens ATCC 13124 4201952 YP_694549.1 CDS CPF_0085 NC_008261.1 101318 102325 D identified by similarity to GB:AAC70005.1; match to protein family HMM PF01408; match to protein family HMM PF02894; myo-inositol 2-dehydrogenase 101318..102325 Clostridium perfringens ATCC 13124 4203164 YP_694550.1 CDS iolE NC_008261.1 102444 103337 D identified by similarity to SP:P42416; match to protein family HMM PF01261; myo-inositol catabolism protein IolE 102444..103337 Clostridium perfringens ATCC 13124 4202416 YP_694551.1 CDS CPF_0087 NC_008261.1 103419 105008 D uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 103419..105008 Clostridium perfringens ATCC 13124 4203562 YP_694552.1 CDS CPF_0088 NC_008261.1 105096 106145 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 105096..106145 Clostridium perfringens ATCC 13124 4202992 YP_694553.1 CDS CPF_0089 NC_008261.1 106517 107275 D identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 106517..107275 Clostridium perfringens ATCC 13124 4203284 YP_694554.1 CDS CPF_0090 NC_008261.1 107507 108283 D identified by similarity to SP:P52046; match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase 107507..108283 Clostridium perfringens ATCC 13124 4201622 YP_694555.1 CDS CPF_0091 NC_008261.1 108386 109936 D identified by similarity to GB:CAB77207.1; match to protein family HMM PF01144; propionate CoA-transferase 108386..109936 Clostridium perfringens ATCC 13124 4203187 YP_694556.1 CDS CPF_0092 NC_008261.1 110040 111176 D identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 110040..111176 Clostridium perfringens ATCC 13124 4200957 YP_694557.1 CDS CPF_0093 NC_008261.1 111587 111937 R identified by similarity to PIR:D75566; hypothetical protein complement(111587..111937) Clostridium perfringens ATCC 13124 4201266 YP_694558.1 CDS gldA NC_008261.1 112515 113645 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 112515..113645 Clostridium perfringens ATCC 13124 4203269 YP_694559.1 CDS CPF_0095 NC_008261.1 113671 115419 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 113671..115419 Clostridium perfringens ATCC 13124 4202508 YP_694560.1 CDS CPF_0096 NC_008261.1 115780 117213 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 115780..117213 Clostridium perfringens ATCC 13124 4201115 YP_694561.1 CDS CPF_0097 NC_008261.1 117490 117762 D hypothetical protein 117490..117762 Clostridium perfringens ATCC 13124 4201577 YP_694562.1 CDS ldh NC_008261.1 118161 119114 R Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase complement(118161..119114) Clostridium perfringens ATCC 13124 4201996 YP_694563.1 CDS CPF_0099 NC_008261.1 119740 120915 D hypothetical protein 119740..120915 Clostridium perfringens ATCC 13124 4202386 YP_694564.1 CDS CPF_0100 NC_008261.1 121034 121474 D hypothetical protein 121034..121474 Clostridium perfringens ATCC 13124 4202302 YP_694565.1 CDS CPF_0101 NC_008261.1 121682 122422 D identified by match to protein family HMM PF06161; hypothetical protein 121682..122422 Clostridium perfringens ATCC 13124 4202119 YP_694566.1 CDS CPF_0102 NC_008261.1 122534 123406 D identified by match to protein family HMM PF06161; hypothetical protein 122534..123406 Clostridium perfringens ATCC 13124 4201542 YP_694567.1 CDS CPF_0103 NC_008261.1 123542 124864 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein complement(123542..124864) Clostridium perfringens ATCC 13124 4202213 YP_694568.1 CDS CPF_0104 NC_008261.1 125634 125918 R hypothetical protein complement(125634..125918) Clostridium perfringens ATCC 13124 4200967 YP_694569.1 CDS CPF_0105 NC_008261.1 126126 126362 R hypothetical protein complement(126126..126362) Clostridium perfringens ATCC 13124 4202153 YP_694570.1 CDS thiH NC_008261.1 126740 128161 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(126740..128161) Clostridium perfringens ATCC 13124 4201863 YP_694571.1 CDS CPF_0107 NC_008261.1 128267 128518 R identified by similarity to GB:CAC39225.1; hypothetical protein complement(128267..128518) Clostridium perfringens ATCC 13124 4201331 YP_694572.1 CDS CPF_0108 NC_008261.1 128962 130527 D identified by similarity to PIR:D97239; match to protein family HMM PF06207; hypothetical protein 128962..130527 Clostridium perfringens ATCC 13124 4201619 YP_694573.1 CDS CPF_0109 NC_008261.1 130674 130901 D identified by similarity to GB:BAC14097.1; match to protein family HMM PF07872; hypothetical protein 130674..130901 Clostridium perfringens ATCC 13124 4203891 YP_694574.1 CDS CPF_0110 NC_008261.1 131194 131418 D identified by similarity to GB:AAK76917.1; hypothetical protein 131194..131418 Clostridium perfringens ATCC 13124 4202713 YP_694575.1 CDS CPF_0111 NC_008261.1 131476 132369 R identified by similarity to SP:P36548; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(131476..132369) Clostridium perfringens ATCC 13124 4203517 YP_694576.1 CDS CPF_0112 NC_008261.1 132430 133599 R hypothetical protein complement(132430..133599) Clostridium perfringens ATCC 13124 4202002 YP_694577.1 CDS CPF_0113 NC_008261.1 133611 134861 R identified by similarity to PIR:F97297; hypothetical protein complement(133611..134861) Clostridium perfringens ATCC 13124 4202201 YP_694578.1 CDS CPF_0114 NC_008261.1 134977 135777 D identified by similarity to PIR:C97028; hypothetical protein 134977..135777 Clostridium perfringens ATCC 13124 4203796 YP_694579.1 CDS CPF_0115 NC_008261.1 135917 136597 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 135917..136597 Clostridium perfringens ATCC 13124 4202046 YP_694580.1 CDS CPF_0116 NC_008261.1 136594 137607 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 136594..137607 Clostridium perfringens ATCC 13124 4201739 YP_694581.1 CDS CPF_0117 NC_008261.1 137659 137856 D hypothetical protein 137659..137856 Clostridium perfringens ATCC 13124 4202838 YP_694582.1 CDS CPF_0118 NC_008261.1 138387 139157 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 138387..139157 Clostridium perfringens ATCC 13124 4203597 YP_694583.1 CDS CPF_0119 NC_008261.1 139147 141174 D identified by match to protein family HMM PF02687; ABC transporter permease 139147..141174 Clostridium perfringens ATCC 13124 4201977 YP_694584.1 CDS CPF_0120 NC_008261.1 141583 142152 R hypothetical protein complement(141583..142152) Clostridium perfringens ATCC 13124 4202388 YP_694585.1 CDS CPF_0121 NC_008261.1 142244 142456 D identified by similarity to PIR:F69799; hypothetical protein 142244..142456 Clostridium perfringens ATCC 13124 4203396 YP_694586.1 CDS CPF_0122 NC_008261.1 142898 147187 D identified by match to protein family HMM PF05738; Cna B domain-containing protein 142898..147187 Clostridium perfringens ATCC 13124 4203414 YP_694587.1 CDS CPF_0123 NC_008261.1 147208 149112 D identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 147208..149112 Clostridium perfringens ATCC 13124 4202970 YP_694588.1 CDS CPF_0124 NC_008261.1 149168 150046 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 149168..150046 Clostridium perfringens ATCC 13124 4201202 YP_694589.1 CDS CPF_0125 NC_008261.1 150467 150793 D hypothetical protein 150467..150793 Clostridium perfringens ATCC 13124 4202251 YP_694590.1 CDS CPF_0126 NC_008261.1 151037 152053 D identified by match to protein family HMM PF03595; C4-dicarboxylate transporter family protein 151037..152053 Clostridium perfringens ATCC 13124 4203462 YP_694591.1 CDS CPF_0127 NC_008261.1 152568 153587 D identified by match to protein family HMM PF03601; hypothetical protein 152568..153587 Clostridium perfringens ATCC 13124 4201751 YP_694592.1 CDS CPF_0128 NC_008261.1 153788 153940 D hypothetical protein 153788..153940 Clostridium perfringens ATCC 13124 4201693 YP_694593.1 CDS CPF_0129 NC_008261.1 154296 155189 R identified by match to protein family HMM PF00892; hypothetical protein complement(154296..155189) Clostridium perfringens ATCC 13124 4202534 YP_694594.1 CDS CPF_0130 NC_008261.1 155518 156756 D identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 155518..156756 Clostridium perfringens ATCC 13124 4202550 YP_694595.1 CDS CPF_0131 NC_008261.1 157407 158333 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 157407..158333 Clostridium perfringens ATCC 13124 4202225 YP_694596.1 CDS CPF_0132 NC_008261.1 158524 158793 R Selenoprotein; identified by match to protein family HMM PF01521; HesB-like domain-containing protein complement(158524..158793) Clostridium perfringens ATCC 13124 4202448 YP_694597.1 CDS rbr NC_008261.1 159162 159749 D identified by match to protein family HMM PF02915; rubrerythrin 159162..159749 Clostridium perfringens ATCC 13124 4202607 YP_694598.1 CDS CPF_0134 NC_008261.1 159913 160458 R identified by similarity to GB:AAO34821.1; hypothetical protein complement(159913..160458) Clostridium perfringens ATCC 13124 4202704 YP_694599.1 CDS CPF_0135 NC_008261.1 160888 161013 D hypothetical protein 160888..161013 Clostridium perfringens ATCC 13124 4201455 YP_694600.1 CDS CPF_0136 NC_008261.1 161277 162833 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 161277..162833 Clostridium perfringens ATCC 13124 4202043 YP_694601.1 CDS CPF_0137 NC_008261.1 162871 163032 R hypothetical protein complement(162871..163032) Clostridium perfringens ATCC 13124 4201717 YP_694602.1 CDS CPF_0138 NC_008261.1 163213 164763 D identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 163213..164763 Clostridium perfringens ATCC 13124 4203830 YP_694603.1 CDS CPF_0139 NC_008261.1 165074 166159 D identified by similarity to SP:P23737; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 165074..166159 Clostridium perfringens ATCC 13124 4202270 YP_694604.1 CDS CPF_0140 NC_008261.1 166247 167071 D identified by similarity to SP:P25257; type II restriction endonuclease 166247..167071 Clostridium perfringens ATCC 13124 4201369 YP_694605.1 CDS CPF_0141 NC_008261.1 167148 167462 D identified by similarity to GB:BAB62471.1; hypothetical protein 167148..167462 Clostridium perfringens ATCC 13124 4203451 YP_694606.1 CDS CPF_0142 NC_008261.1 167674 167946 D hypothetical protein 167674..167946 Clostridium perfringens ATCC 13124 4203489 YP_694607.1 CDS CPF_0143 NC_008261.1 168292 169326 D hypothetical protein 168292..169326 Clostridium perfringens ATCC 13124 4203545 YP_694608.1 CDS CPF_0144 NC_008261.1 169590 170042 D hypothetical protein 169590..170042 Clostridium perfringens ATCC 13124 4202722 YP_694609.1 CDS kptA NC_008261.1 170504 171064 D in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 170504..171064 Clostridium perfringens ATCC 13124 4202751 YP_694610.1 CDS CPF_0146 NC_008261.1 171485 173662 D identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 171485..173662 Clostridium perfringens ATCC 13124 4202920 YP_694611.1 CDS CPF_0147 NC_008261.1 173666 175234 D identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738; surface protein 173666..175234 Clostridium perfringens ATCC 13124 4201966 YP_694612.1 CDS CPF_0148 NC_008261.1 175661 176482 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 175661..176482 Clostridium perfringens ATCC 13124 4203438 YP_694613.1 CDS CPF_0149 NC_008261.1 176551 177462 D identified by similarity to GB:AAO36679.1; hypothetical protein 176551..177462 Clostridium perfringens ATCC 13124 4202649 YP_694614.1 CDS CPF_0150 NC_008261.1 177937 178614 D hypothetical protein 177937..178614 Clostridium perfringens ATCC 13124 4203330 YP_694615.1 CDS CPF_0151 NC_008261.1 178898 179554 D hypothetical protein 178898..179554 Clostridium perfringens ATCC 13124 4200980 YP_694616.1 CDS CPF_0152 NC_008261.1 179631 180182 D identified by similarity to GB:BAC70304.1; match to protein family HMM TIGR02464; hypothetical protein 179631..180182 Clostridium perfringens ATCC 13124 4203214 YP_694617.1 CDS CPF_0153 NC_008261.1 180208 180372 D hypothetical protein 180208..180372 Clostridium perfringens ATCC 13124 4201444 YP_694618.1 CDS CPF_0154 NC_008261.1 180384 181850 R identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043; hypothetical protein complement(180384..181850) Clostridium perfringens ATCC 13124 4203120 YP_694619.1 CDS CPF_0155 NC_008261.1 182521 183552 D hypothetical protein 182521..183552 Clostridium perfringens ATCC 13124 4200997 YP_694620.1 CDS CPF_0156 NC_008261.1 184140 185642 D identified by similarity to SP:P19995; match to protein family HMM PF01289; perfringolysin O 184140..185642 Clostridium perfringens ATCC 13124 4203419 YP_694621.1 CDS CPF_0157 NC_008261.1 185837 186295 D hypothetical protein 185837..186295 Clostridium perfringens ATCC 13124 4201960 YP_694622.1 CDS CPF_0158 NC_008261.1 186367 186585 D identified by similarity to GB:CAD62162.1; hypothetical protein 186367..186585 Clostridium perfringens ATCC 13124 4202796 YP_694623.1 CDS CPF_0159 NC_008261.1 187354 188841 D identified by match to protein family HMM PF00324; amino acid permease 187354..188841 Clostridium perfringens ATCC 13124 4202395 YP_694624.1 CDS CPF_0160 NC_008261.1 189000 191069 D identified by match to protein family HMM PF02449; beta-galactosidase 189000..191069 Clostridium perfringens ATCC 13124 4202873 YP_694625.1 CDS arcA NC_008261.1 191622 192863 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 191622..192863 Clostridium perfringens ATCC 13124 4202802 YP_694626.1 CDS argF NC_008261.1 192972 193967 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 192972..193967 Clostridium perfringens ATCC 13124 4203134 YP_694627.1 CDS arcD NC_008261.1 194112 195548 D identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR00905; arginine/ornithine antiporter 194112..195548 Clostridium perfringens ATCC 13124 4201540 YP_694628.1 CDS arcC NC_008261.1 195609 196553 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 195609..196553 Clostridium perfringens ATCC 13124 4201984 YP_694629.1 CDS argR NC_008261.1 196626 197081 D identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR 196626..197081 Clostridium perfringens ATCC 13124 4203048 YP_694630.1 CDS colA NC_008261.1 197623 200937 D identified by similarity to SP:P43153; match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; collagenase 197623..200937 Clostridium perfringens ATCC 13124 4201122 YP_694631.1 CDS mscL NC_008261.1 201085 201543 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(201085..201543) Clostridium perfringens ATCC 13124 4201551 YP_694632.1 CDS CPF_0168 NC_008261.1 202287 202910 D identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 202287..202910 Clostridium perfringens ATCC 13124 4203751 YP_694633.1 CDS metC NC_008261.1 202974 204128 D identified by similarity to GB:AAF14695.1; match to protein family HMM PF01053; cystathionine beta-lyase 202974..204128 Clostridium perfringens ATCC 13124 4202909 YP_694634.1 CDS CPF_0170 NC_008261.1 204115 205023 D identified by similarity to SP:P37887; match to protein family HMM PF00291; cysteine synthase 204115..205023 Clostridium perfringens ATCC 13124 4203840 YP_694635.1 CDS luxS NC_008261.1 205108 205563 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 205108..205563 Clostridium perfringens ATCC 13124 4203506 YP_694636.1 CDS CPF_0172 NC_008261.1 205912 206886 D identified by similarity to GB:AAC45283.1; match to protein family HMM PF07859; esterase 205912..206886 Clostridium perfringens ATCC 13124 4201593 YP_694637.1 CDS CPF_0173 NC_008261.1 207270 208061 R identified by match to protein family HMM PF06182; hypothetical protein complement(207270..208061) Clostridium perfringens ATCC 13124 4201698 YP_694638.1 CDS CPF_0174 NC_008261.1 208066 208884 R identified by match to protein family HMM PF06182; ABC transporter permease complement(208066..208884) Clostridium perfringens ATCC 13124 4201731 YP_694639.1 CDS CPF_0175 NC_008261.1 208887 209912 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(208887..209912) Clostridium perfringens ATCC 13124 4203369 YP_694640.1 CDS CPF_0176 NC_008261.1 210223 210891 D identified by match to protein family HMM PF00881; nitroreductase 210223..210891 Clostridium perfringens ATCC 13124 4202638 YP_694641.1 CDS nanE NC_008261.1 211176 211841 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 211176..211841 Clostridium perfringens ATCC 13124 4201411 YP_694642.1 CDS nanA NC_008261.1 211878 212744 D catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 211878..212744 Clostridium perfringens ATCC 13124 4203825 YP_694643.1 CDS CPF_0179 NC_008261.1 212848 214365 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein 212848..214365 Clostridium perfringens ATCC 13124 4201196 YP_694644.1 CDS CPF_0180 NC_008261.1 214476 214928 D identified by similarity to GB:CAG20668.1; match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 214476..214928 Clostridium perfringens ATCC 13124 4202278 YP_694645.1 CDS CPF_0181 NC_008261.1 215084 215971 D identified by match to protein family HMM PF00480; ROK family protein 215084..215971 Clostridium perfringens ATCC 13124 4201662 YP_694646.1 CDS CPF_0182 NC_008261.1 216162 217001 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 216162..217001 Clostridium perfringens ATCC 13124 4202018 YP_694647.1 CDS CPF_0183 NC_008261.1 217188 217577 R hypothetical protein complement(217188..217577) Clostridium perfringens ATCC 13124 4201296 YP_694648.1 CDS nagH NC_008261.1 217840 222723 D identified by similarity to SP:P26831; match to protein family HMM PF00404; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; hyaluronidase 217840..222723 Clostridium perfringens ATCC 13124 4201720 YP_694649.1 CDS cbiM NC_008261.1 223602 224345 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 223602..224345 Clostridium perfringens ATCC 13124 4203268 YP_694650.1 CDS cbiN NC_008261.1 224345 224656 D periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 224345..224656 Clostridium perfringens ATCC 13124 4202244 YP_694651.1 CDS cbiQ NC_008261.1 224640 225410 D identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 224640..225410 Clostridium perfringens ATCC 13124 4201673 YP_694652.1 CDS cbiO NC_008261.1 225425 226282 D with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 225425..226282 Clostridium perfringens ATCC 13124 4201231 YP_694653.1 CDS CPF_0189 NC_008261.1 226838 227035 D hypothetical protein 226838..227035 Clostridium perfringens ATCC 13124 4201884 YP_694654.1 CDS CPF_0190 NC_008261.1 227239 228102 R identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase complement(227239..228102) Clostridium perfringens ATCC 13124 4203394 YP_694655.1 CDS CPF_0191 NC_008261.1 228325 229524 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(228325..229524) Clostridium perfringens ATCC 13124 4203291 YP_694656.1 CDS CPF_0192 NC_008261.1 230210 230866 D hypothetical protein 230210..230866 Clostridium perfringens ATCC 13124 4201294 YP_694657.1 CDS CPF_0194 NC_008261.1 236809 237438 D identified by similarity to GB:AAM23932.1; hypothetical protein 236809..237438 Clostridium perfringens ATCC 13124 4202436 YP_694658.1 CDS CPF_0195 NC_008261.1 237945 238214 D identified by similarity to PIR:G97348; match to protein family HMM PF02583; hypothetical protein 237945..238214 Clostridium perfringens ATCC 13124 4202923 YP_694659.1 CDS CPF_0196 NC_008261.1 238273 238425 D hypothetical protein 238273..238425 Clostridium perfringens ATCC 13124 4202162 YP_694660.1 CDS CPF_0197 NC_008261.1 239731 240312 D hypothetical protein 239731..240312 Clostridium perfringens ATCC 13124 4201097 YP_694661.1 CDS CPF_0198 NC_008261.1 240450 242825 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(240450..242825) Clostridium perfringens ATCC 13124 4203663 YP_694662.1 CDS CPF_0199 NC_008261.1 243192 244250 D identified by match to protein family HMM PF01757; acyltransferase 243192..244250 Clostridium perfringens ATCC 13124 4203496 YP_694663.1 CDS CPF_0200 NC_008261.1 244351 244578 D identified by similarity to GB:AAO91513.1; hypothetical protein 244351..244578 Clostridium perfringens ATCC 13124 4201116 YP_694664.1 CDS CPF_0201 NC_008261.1 244718 245599 D hypothetical protein 244718..245599 Clostridium perfringens ATCC 13124 4203427 YP_694665.1 CDS CPF_0202 NC_008261.1 245609 247825 D hypothetical protein 245609..247825 Clostridium perfringens ATCC 13124 4201414 YP_694666.1 CDS CPF_0203 NC_008261.1 248306 249076 D hypothetical protein 248306..249076 Clostridium perfringens ATCC 13124 4201970 YP_694667.1 CDS CPF_0204 NC_008261.1 249255 250070 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(249255..250070) Clostridium perfringens ATCC 13124 4203181 YP_694668.1 CDS CPF_0205 NC_008261.1 250644 251288 R identified by match to protein family HMM PF01126; heme oxygenase complement(250644..251288) Clostridium perfringens ATCC 13124 4201031 YP_694669.1 CDS CPF_0206 NC_008261.1 251689 252912 D identified by similarity to SP:P13457; match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 251689..252912 Clostridium perfringens ATCC 13124 4203310 YP_694670.1 CDS sbcC NC_008261.1 252899 256417 D identified by similarity to SP:P13458; match to protein family HMM PF02463; exonuclease SbcC 252899..256417 Clostridium perfringens ATCC 13124 4203193 YP_694671.1 CDS ackA NC_008261.1 256823 258019 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 256823..258019 Clostridium perfringens ATCC 13124 4203428 YP_694672.1 CDS CPF_0209 NC_008261.1 258066 258824 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(258066..258824) Clostridium perfringens ATCC 13124 4202239 YP_694673.1 CDS CPF_0210 NC_008261.1 258971 261202 D identified by match to protein family HMM TIGR01167; cell wall anchor domain-containing protein 258971..261202 Clostridium perfringens ATCC 13124 4201136 YP_694674.1 CDS CPF_0211 NC_008261.1 261265 261912 D iron transporter 261265..261912 Clostridium perfringens ATCC 13124 4203896 YP_694675.1 CDS CPF_0212 NC_008261.1 261914 262477 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 261914..262477 Clostridium perfringens ATCC 13124 4202997 YP_694676.1 CDS CPF_0213 NC_008261.1 262491 263378 D identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein 262491..263378 Clostridium perfringens ATCC 13124 4201811 YP_694677.1 CDS CPF_0214 NC_008261.1 263365 264351 D identified by match to protein family HMM PF01032; iron ABC transporter permease 263365..264351 Clostridium perfringens ATCC 13124 4203201 YP_694678.1 CDS CPF_0215 NC_008261.1 264352 265131 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 264352..265131 Clostridium perfringens ATCC 13124 4201234 YP_694679.1 CDS CPF_0216 NC_008261.1 265173 266900 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 265173..266900 Clostridium perfringens ATCC 13124 4203833 YP_694680.1 CDS CPF_0217 NC_008261.1 266901 268589 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 266901..268589 Clostridium perfringens ATCC 13124 4203289 YP_694681.1 CDS CPF_0218 NC_008261.1 268576 268971 D identified by similarity to GB:AAS11534.1; match to protein family HMM PF04304; hypothetical protein 268576..268971 Clostridium perfringens ATCC 13124 4201708 YP_694682.1 CDS CPF_0219 NC_008261.1 268946 269251 D identified by similarity to GB:AAO79602.1; hypothetical protein 268946..269251 Clostridium perfringens ATCC 13124 4203696 YP_694683.1 CDS CPF_0220 NC_008261.1 269379 269564 D identified by match to protein family HMM PF04324; (Fe-S)-binding protein 269379..269564 Clostridium perfringens ATCC 13124 4201678 YP_694684.1 CDS CPF_0221 NC_008261.1 269876 271321 D can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase; arylsulfatase 269876..271321 Clostridium perfringens ATCC 13124 4203507 YP_694685.1 CDS CPF_0222 NC_008261.1 271479 272816 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter complement(271479..272816) Clostridium perfringens ATCC 13124 4202976 YP_694686.1 CDS CPF_0223 NC_008261.1 273017 274036 R iron compound ABC transporter iron compound-binding protein complement(273017..274036) Clostridium perfringens ATCC 13124 4203219 YP_694687.1 CDS CPF_0224 NC_008261.1 274017 274805 R identified by similarity to GB:AAS44277.1; hypothetical protein complement(274017..274805) Clostridium perfringens ATCC 13124 4201047 YP_694688.1 CDS CPF_0225 NC_008261.1 274798 276228 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(274798..276228) Clostridium perfringens ATCC 13124 4203040 YP_694689.1 CDS CPF_0226 NC_008261.1 276218 276889 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(276218..276889) Clostridium perfringens ATCC 13124 4203204 YP_694690.1 CDS CPF_0227 NC_008261.1 277181 278380 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 277181..278380 Clostridium perfringens ATCC 13124 4201761 YP_694691.1 CDS CPF_0228 NC_008261.1 278633 279160 D hypothetical protein 278633..279160 Clostridium perfringens ATCC 13124 4202216 YP_694692.1 CDS CPF_0230 NC_008261.1 279534 280310 D hypothetical protein 279534..280310 Clostridium perfringens ATCC 13124 4201442 YP_694693.1 CDS CPF_0231 NC_008261.1 280728 282158 D hypothetical protein 280728..282158 Clostridium perfringens ATCC 13124 4203456 YP_694694.1 CDS CPF_0232 NC_008261.1 282161 282853 D hypothetical protein 282161..282853 Clostridium perfringens ATCC 13124 4203401 YP_694695.1 CDS CPF_0233 NC_008261.1 282910 283785 R catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase complement(282910..283785) Clostridium perfringens ATCC 13124 4201320 YP_694696.1 CDS CPF_0234 NC_008261.1 283778 285256 R hypothetical protein complement(283778..285256) Clostridium perfringens ATCC 13124 4203951 YP_694697.1 CDS CPF_0235 NC_008261.1 285401 285733 R hypothetical protein complement(285401..285733) Clostridium perfringens ATCC 13124 4203742 YP_694698.1 CDS CPF_0236 NC_008261.1 285726 286064 R hypothetical protein complement(285726..286064) Clostridium perfringens ATCC 13124 4202908 YP_694699.1 CDS CPF_0237 NC_008261.1 286074 286709 R identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase complement(286074..286709) Clostridium perfringens ATCC 13124 4203130 YP_694700.1 CDS CPF_0238 NC_008261.1 287113 289440 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(287113..289440) Clostridium perfringens ATCC 13124 4202033 YP_694701.1 CDS CPF_0239 NC_008261.1 289694 290962 D identified by match to protein family HMM PF00226; dnaJ domain-containing protein 289694..290962 Clostridium perfringens ATCC 13124 4203706 YP_694702.1 CDS CPF_0240 NC_008261.1 290980 291582 D co-chaperone GrpE 290980..291582 Clostridium perfringens ATCC 13124 4203273 YP_694703.1 CDS CPF_0241 NC_008261.1 291570 293297 D identified by match to protein family HMM PF00012; molecular chaperone DnaK 291570..293297 Clostridium perfringens ATCC 13124 4201452 YP_694704.1 CDS CPF_0242 NC_008261.1 293315 294049 D hypothetical protein 293315..294049 Clostridium perfringens ATCC 13124 4203842 YP_694705.1 CDS CPF_0243 NC_008261.1 294321 295094 D identified by similarity to GB:AAC45230.1; match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein 294321..295094 Clostridium perfringens ATCC 13124 4201658 YP_694706.1 CDS CPF_0244 NC_008261.1 295409 296731 D lipoprotein 295409..296731 Clostridium perfringens ATCC 13124 4202128 YP_694707.1 CDS CPF_0245 NC_008261.1 296804 297214 R identified by similarity to GB:AAO34832.1; hypothetical protein complement(296804..297214) Clostridium perfringens ATCC 13124 4201032 YP_694708.1 CDS CPF_0246 NC_008261.1 297388 297573 D identified by similarity to GB:AAS44038.1; hypothetical protein 297388..297573 Clostridium perfringens ATCC 13124 4202080 YP_694709.1 CDS CPF_0247 NC_008261.1 297586 297834 D identified by similarity to GB:AAP11869.1; match to protein family HMM PF07875; hypothetical protein 297586..297834 Clostridium perfringens ATCC 13124 4202732 YP_694710.1 CDS CPF_0248 NC_008261.1 297919 298233 R identified by similarity to GB:AAM06508.1; hypothetical protein complement(297919..298233) Clostridium perfringens ATCC 13124 4201160 YP_694711.1 CDS CPF_0249 NC_008261.1 298370 299101 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(298370..299101) Clostridium perfringens ATCC 13124 4203929 YP_694712.1 CDS CPF_0250 NC_008261.1 299317 300459 D identified by similarity to GB:AAQ66620.1; match to protein family HMM PF04313; hypothetical protein 299317..300459 Clostridium perfringens ATCC 13124 4203047 YP_694713.1 CDS lacA NC_008261.1 300718 301332 D identified by similarity to SP:P07464; match to protein family HMM PF00132; galactoside O-acetyltransferase 300718..301332 Clostridium perfringens ATCC 13124 4203587 YP_694714.1 CDS CPF_0252 NC_008261.1 301576 302058 D identified by match to protein family HMM PF02559; CarD family transcriptional regulator 301576..302058 Clostridium perfringens ATCC 13124 4202701 YP_694715.1 CDS CPF_0253 NC_008261.1 302242 303378 D identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 302242..303378 Clostridium perfringens ATCC 13124 4203509 YP_694716.1 CDS CPF_0254 NC_008261.1 303375 303998 D identified by match to protein family HMM PF03932; CutC family protein 303375..303998 Clostridium perfringens ATCC 13124 4203818 YP_694717.1 CDS CPF_0255 NC_008261.1 304374 304574 D hypothetical protein 304374..304574 Clostridium perfringens ATCC 13124 4202191 YP_694718.1 CDS CPF_0256 NC_008261.1 304695 306008 R identified by match to protein family HMM PF07613; hypothetical protein complement(304695..306008) Clostridium perfringens ATCC 13124 4203795 YP_694719.1 CDS CPF_0257 NC_008261.1 306226 306522 R hypothetical protein complement(306226..306522) Clostridium perfringens ATCC 13124 4201093 YP_694720.1 CDS ung NC_008261.1 306730 307407 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(306730..307407) Clostridium perfringens ATCC 13124 4200956 YP_694721.1 CDS CPF_0259 NC_008261.1 307745 310282 D identified by similarity to GB:BAA32403.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM TIGR01167; beta-N-acetylhexosaminidase 307745..310282 Clostridium perfringens ATCC 13124 4200959 YP_694722.1 CDS CPF_0261 NC_008261.1 316026 316493 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(316026..316493) Clostridium perfringens ATCC 13124 4203480 YP_694723.1 CDS CPF_0262 NC_008261.1 317140 317886 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase 317140..317886 Clostridium perfringens ATCC 13124 4203592 YP_694724.1 CDS CPF_0263 NC_008261.1 318350 319162 D identified by match to protein family HMM PF01061; ABC-2 type transporter permease 318350..319162 Clostridium perfringens ATCC 13124 4202406 YP_694725.1 CDS CPF_0264 NC_008261.1 319180 320352 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 319180..320352 Clostridium perfringens ATCC 13124 4203725 YP_694726.1 CDS CPF_0265 NC_008261.1 320366 321649 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 320366..321649 Clostridium perfringens ATCC 13124 4201222 YP_694727.1 CDS CPF_0266 NC_008261.1 321668 322903 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 321668..322903 Clostridium perfringens ATCC 13124 4201033 YP_694728.1 CDS CPF_0267 NC_008261.1 322917 324098 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 322917..324098 Clostridium perfringens ATCC 13124 4201556 YP_694729.1 CDS CPF_0268 NC_008261.1 324213 325646 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 324213..325646 Clostridium perfringens ATCC 13124 4201685 YP_694730.1 CDS CPF_0269 NC_008261.1 325782 326435 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; haloacid dehalogenase complement(325782..326435) Clostridium perfringens ATCC 13124 4203604 YP_694731.1 CDS CPF_0270 NC_008261.1 326518 327867 R identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase complement(326518..327867) Clostridium perfringens ATCC 13124 4203449 YP_694732.1 CDS CPF_0271 NC_008261.1 328002 328148 D hypothetical protein 328002..328148 Clostridium perfringens ATCC 13124 4202898 YP_694733.1 CDS CPF_0273 NC_008261.1 328565 328855 D hypothetical protein 328565..328855 Clostridium perfringens ATCC 13124 4201009 YP_694734.1 CDS CPF_0274 NC_008261.1 329040 330338 D identified by similarity to GB:AAF86217.1; match to protein family HMM PF00877; SagA protein 329040..330338 Clostridium perfringens ATCC 13124 4203147 YP_694735.1 CDS CPF_0275 NC_008261.1 330533 331282 D identified by similarity to GB:AAM23407.1; match to protein family HMM PF05175; hypothetical protein 330533..331282 Clostridium perfringens ATCC 13124 4203552 YP_694736.1 CDS CPF_0276 NC_008261.1 331285 332127 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 331285..332127 Clostridium perfringens ATCC 13124 4203044 YP_694737.1 CDS CPF_0277 NC_008261.1 332413 332652 R identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator complement(332413..332652) Clostridium perfringens ATCC 13124 4203746 YP_694738.1 CDS CPF_0278 NC_008261.1 333343 333942 D identified by similarity to GB:AAK78295.1; hypothetical protein 333343..333942 Clostridium perfringens ATCC 13124 4200977 YP_694739.1 CDS CPF_0279 NC_008261.1 333978 334853 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(333978..334853) Clostridium perfringens ATCC 13124 4203028 YP_694740.1 CDS CPF_0280 NC_008261.1 334964 335986 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(334964..335986) Clostridium perfringens ATCC 13124 4202237 YP_694741.1 CDS CPF_0281 NC_008261.1 336162 337013 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein 336162..337013 Clostridium perfringens ATCC 13124 4203739 YP_694742.1 CDS galE NC_008261.1 337074 338060 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(337074..338060) Clostridium perfringens ATCC 13124 4202109 YP_694743.1 CDS CPF_0283 NC_008261.1 338214 338558 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein 338214..338558 Clostridium perfringens ATCC 13124 4202156 YP_694744.1 CDS CPF_0284 NC_008261.1 338634 339833 R identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase complement(338634..339833) Clostridium perfringens ATCC 13124 4203157 YP_694745.1 CDS CPF_0285 NC_008261.1 340337 343744 R identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167; endo-beta-N-acetylglucosaminidase complement(340337..343744) Clostridium perfringens ATCC 13124 4201313 YP_694746.1 CDS CPF_0286 NC_008261.1 344115 344420 D identified by similarity to PIR:A96960; hypothetical protein 344115..344420 Clostridium perfringens ATCC 13124 4203583 YP_694747.1 CDS acpS NC_008261.1 344469 344870 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 344469..344870 Clostridium perfringens ATCC 13124 4202589 YP_694748.1 CDS CPF_0288 NC_008261.1 344857 346356 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase 344857..346356 Clostridium perfringens ATCC 13124 4203881 YP_694749.1 CDS CPF_0289 NC_008261.1 346417 347010 D identified by similarity to PIR:D96960; hypothetical protein 346417..347010 Clostridium perfringens ATCC 13124 4203351 YP_694750.1 CDS CPF_0290 NC_008261.1 347257 347499 D identified by similarity to GB:AAM25326.1; hypothetical protein 347257..347499 Clostridium perfringens ATCC 13124 4202728 YP_694751.1 CDS CPF_0291 NC_008261.1 347505 347858 D identified by match to protein family HMM PF02452; PemK family protein 347505..347858 Clostridium perfringens ATCC 13124 4203490 YP_694752.1 CDS CPF_0292 NC_008261.1 348296 349120 D identified by similarity to SP:Q58094; match to protein family HMM PF00456; transketolase 348296..349120 Clostridium perfringens ATCC 13124 4202475 YP_694753.1 CDS CPF_0293 NC_008261.1 349120 350064 D identified by similarity to SP:Q58092; match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 349120..350064 Clostridium perfringens ATCC 13124 4203226 YP_694754.1 CDS CPF_0294 NC_008261.1 350183 350275 D hypothetical protein 350183..350275 Clostridium perfringens ATCC 13124 4202512 YP_694755.1 CDS CPF_0295 NC_008261.1 350291 351148 D identified by match to protein family HMM PF02588; hypothetical protein 350291..351148 Clostridium perfringens ATCC 13124 4201352 YP_694756.1 CDS CPF_0296 NC_008261.1 351354 352040 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 351354..352040 Clostridium perfringens ATCC 13124 4202422 YP_694757.1 CDS CPF_0297 NC_008261.1 352030 352938 D identified by similarity to SP:O34876; match to protein family HMM PF02687; cell division protein 352030..352938 Clostridium perfringens ATCC 13124 4201589 YP_694758.1 CDS CPF_0298 NC_008261.1 353027 354313 D identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 353027..354313 Clostridium perfringens ATCC 13124 4203821 YP_694759.1 CDS CPF_0299 NC_008261.1 354336 355616 D hypothetical protein 354336..355616 Clostridium perfringens ATCC 13124 4203372 YP_694760.1 CDS uvrB NC_008261.1 355704 357683 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 355704..357683 Clostridium perfringens ATCC 13124 4202558 YP_694761.1 CDS CPF_0301 NC_008261.1 357949 358800 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 357949..358800 Clostridium perfringens ATCC 13124 4201888 YP_694762.1 CDS CPF_0302 NC_008261.1 359036 359761 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 359036..359761 Clostridium perfringens ATCC 13124 4202228 YP_694763.1 CDS CPF_0303 NC_008261.1 359754 361352 D identified by similarity to GB:AAP10268.1; ABC transporter permease 359754..361352 Clostridium perfringens ATCC 13124 4203561 YP_694764.1 CDS CPF_0304 NC_008261.1 361573 362577 D identified by similarity to GB:AAL47055.1; lipase 361573..362577 Clostridium perfringens ATCC 13124 4201965 YP_694765.1 CDS CPF_0305 NC_008261.1 362736 364301 D identified by match to protein family HMM PF00488; MutS domain-containing protein 362736..364301 Clostridium perfringens ATCC 13124 4203524 YP_694766.2 CDS CPF_0306 NC_008261.1 364316 365002 D identified by match to protein family HMM PF07729; FCD domain-containing protein 364316..365002 Clostridium perfringens ATCC 13124 4201334 YP_694767.2 CDS lctP NC_008261.1 365231 366763 D identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 365231..366763 Clostridium perfringens ATCC 13124 4202022 YP_694768.1 CDS CPF_0308 NC_008261.1 366858 367646 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 366858..367646 Clostridium perfringens ATCC 13124 4202236 YP_694769.1 CDS CPF_0309 NC_008261.1 367659 368852 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 367659..368852 Clostridium perfringens ATCC 13124 4202421 YP_694770.1 CDS CPF_0310 NC_008261.1 368854 370254 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 368854..370254 Clostridium perfringens ATCC 13124 4203171 YP_694771.1 CDS CPF_0311 NC_008261.1 370338 370736 R identified by similarity to GB:AAO75282.1; hypothetical protein complement(370338..370736) Clostridium perfringens ATCC 13124 4202346 YP_694772.1 CDS CPF_0312 NC_008261.1 371104 371613 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 371104..371613 Clostridium perfringens ATCC 13124 4202539 YP_694773.1 CDS CPF_0313 NC_008261.1 371637 372149 D hypothetical protein 371637..372149 Clostridium perfringens ATCC 13124 4202764 YP_694774.1 CDS CPF_0314 NC_008261.1 372276 372656 R identified by similarity to GB:AAS41741.1; hypothetical protein complement(372276..372656) Clostridium perfringens ATCC 13124 4202115 YP_694775.1 CDS CPF_0315 NC_008261.1 372975 373649 D identified by match to protein family HMM PF06161; hypothetical protein 372975..373649 Clostridium perfringens ATCC 13124 4202305 YP_694776.1 CDS CPF_0316 NC_008261.1 373842 374465 R DedA family protein complement(373842..374465) Clostridium perfringens ATCC 13124 4203568 YP_694777.1 CDS CPF_0317 NC_008261.1 374562 377219 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type complement(374562..377219) Clostridium perfringens ATCC 13124 4203013 YP_694778.1 CDS CPF_0318 NC_008261.1 377759 378556 D identified by similarity to GB:BAD77164.1; match to protein family HMM PF01987; match to protein family HMM TIGR00266; hypothetical protein 377759..378556 Clostridium perfringens ATCC 13124 4203446 YP_694779.1 CDS xpt NC_008261.1 379116 379688 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 379116..379688 Clostridium perfringens ATCC 13124 4201156 YP_694780.1 CDS CPF_0320 NC_008261.1 380174 381106 D identified by match to protein family HMM PF00892; hypothetical protein 380174..381106 Clostridium perfringens ATCC 13124 4201114 YP_694781.1 CDS CPF_0321 NC_008261.1 381297 382679 D identified by match to protein family HMM PF00324; amino acid permease 381297..382679 Clostridium perfringens ATCC 13124 4201636 YP_694782.1 CDS CPF_0322 NC_008261.1 383008 384312 R identified by match to protein family HMM PF04087; hypothetical protein complement(383008..384312) Clostridium perfringens ATCC 13124 4202868 YP_694783.1 CDS CPF_0323 NC_008261.1 384584 385969 D identified by match to protein family HMM PF01523; TldD/PmbA family protein 384584..385969 Clostridium perfringens ATCC 13124 4202903 YP_694784.1 CDS CPF_0324 NC_008261.1 385985 387334 D identified by match to protein family HMM PF01523; TldD/PmbA family protein 385985..387334 Clostridium perfringens ATCC 13124 4201192 YP_694785.1 CDS CPF_0325 NC_008261.1 387643 389229 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 387643..389229 Clostridium perfringens ATCC 13124 4202816 YP_694786.1 CDS ogt NC_008261.1 389547 390023 D identified by similarity to SP:P19220; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 389547..390023 Clostridium perfringens ATCC 13124 4202313 YP_694787.1 CDS recQ NC_008261.1 390072 392246 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 390072..392246 Clostridium perfringens ATCC 13124 4202827 YP_694788.1 CDS CPF_0328 NC_008261.1 392334 392462 D hypothetical protein 392334..392462 Clostridium perfringens ATCC 13124 4201256 YP_694789.1 CDS CPF_0329 NC_008261.1 392477 393274 D identified by match to protein family HMM PF02274; amidinotransferase 392477..393274 Clostridium perfringens ATCC 13124 4202363 YP_694790.1 CDS CPF_0330 NC_008261.1 393418 394857 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 393418..394857 Clostridium perfringens ATCC 13124 4201023 YP_694791.1 CDS CPF_0331 NC_008261.1 395023 395772 D identified by similarity to SP:P32184; match to protein family HMM PF00376; match to protein family HMM PF07739; transcriptional activator tipA 395023..395772 Clostridium perfringens ATCC 13124 4201214 YP_694792.1 CDS CPF_0332 NC_008261.1 395893 396303 D identified by similarity to GB:AAM24863.1; hypothetical protein 395893..396303 Clostridium perfringens ATCC 13124 4203447 YP_694793.1 CDS CPF_0333 NC_008261.1 396319 396723 D identified by similarity to GB:AAM24861.1; hypothetical protein 396319..396723 Clostridium perfringens ATCC 13124 4203473 YP_694794.1 CDS CPF_0334 NC_008261.1 396713 396997 D hypothetical protein 396713..396997 Clostridium perfringens ATCC 13124 4202891 YP_694795.1 CDS CPF_0335 NC_008261.1 397006 397377 D hypothetical protein 397006..397377 Clostridium perfringens ATCC 13124 4203374 YP_694796.1 CDS CPF_0336 NC_008261.1 397452 398123 R identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein complement(397452..398123) Clostridium perfringens ATCC 13124 4202860 YP_694797.1 CDS uvrA NC_008261.1 399068 401887 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 399068..401887 Clostridium perfringens ATCC 13124 4202159 YP_694798.1 CDS CPF_0338 NC_008261.1 402221 402655 D identified by match to protein family HMM PF00498; FHA domain-containing protein 402221..402655 Clostridium perfringens ATCC 13124 4203744 YP_694799.1 CDS CPF_0339 NC_008261.1 402669 403898 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 402669..403898 Clostridium perfringens ATCC 13124 4202309 YP_694800.1 CDS CPF_0340 NC_008261.1 403899 405362 D identified by match to protein family HMM PF00905; penicillin-binding protein 403899..405362 Clostridium perfringens ATCC 13124 4201741 YP_694801.1 CDS uvrC NC_008261.1 405519 407381 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 405519..407381 Clostridium perfringens ATCC 13124 4202089 YP_694802.1 CDS murB NC_008261.1 407530 408444 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 407530..408444 Clostridium perfringens ATCC 13124 4202730 YP_694803.1 CDS CPF_0343 NC_008261.1 408684 409568 D identified by similarity to GB:AAO36958.1; match to protein family HMM PF03668; hypothetical protein 408684..409568 Clostridium perfringens ATCC 13124 4201675 YP_694804.1 CDS CPF_0345 NC_008261.1 410913 411863 D identified by similarity to PIR:B96963; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 410913..411863 Clostridium perfringens ATCC 13124 4202429 YP_694805.1 CDS CPF_0346 NC_008261.1 412037 412591 D lioprotein 412037..412591 Clostridium perfringens ATCC 13124 4202256 YP_694806.1 CDS CPF_0348 NC_008261.1 414446 415225 D identified by similarity to GB:AAP09652.1; hypothetical protein 414446..415225 Clostridium perfringens ATCC 13124 4202693 YP_694807.1 CDS pfkA NC_008261.1 418374 419333 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 418374..419333 Clostridium perfringens ATCC 13124 4202223 YP_694808.1 CDS pyk NC_008261.1 419427 420830 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 419427..420830 Clostridium perfringens ATCC 13124 4202190 YP_694809.1 CDS CPF_0352 NC_008261.1 421410 421766 D identified by match to protein family HMM PF07561; hypothetical protein 421410..421766 Clostridium perfringens ATCC 13124 4202154 YP_694810.1 CDS CPF_0353 NC_008261.1 422075 422872 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 422075..422872 Clostridium perfringens ATCC 13124 4201748 YP_694811.1 CDS cls NC_008261.1 423044 424579 D identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 423044..424579 Clostridium perfringens ATCC 13124 4202702 YP_694812.1 CDS CPF_0355 NC_008261.1 424786 424944 R identified by similarity to PIR:F97334; match to protein family HMM PF07561; hypothetical protein complement(424786..424944) Clostridium perfringens ATCC 13124 4202619 YP_694813.1 CDS CPF_0356 NC_008261.1 425211 426773 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 425211..426773 Clostridium perfringens ATCC 13124 4202876 YP_694814.1 CDS rumA NC_008261.1 427075 428442 D identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 427075..428442 Clostridium perfringens ATCC 13124 4201659 YP_694815.1 CDS CPF_0358 NC_008261.1 428816 429070 R hypothetical protein complement(428816..429070) Clostridium perfringens ATCC 13124 4201289 YP_694816.1 CDS CPF_0359 NC_008261.1 429345 431828 D identified by similarity to GB:AAB85057.1; hypothetical protein 429345..431828 Clostridium perfringens ATCC 13124 4201726 YP_694817.1 CDS CPF_0360 NC_008261.1 432083 432409 D hypothetical protein 432083..432409 Clostridium perfringens ATCC 13124 4202682 YP_694818.1 CDS CPF_0361 NC_008261.1 432472 434523 D identified by match to protein family HMM PF01555; type III restriction-modification system, Mod subunit 432472..434523 Clostridium perfringens ATCC 13124 4201128 YP_694819.1 CDS CPF_0362 NC_008261.1 434536 437700 D identified by match to protein family HMM PF04851; type III restriction-modification system, res subunit 434536..437700 Clostridium perfringens ATCC 13124 4201617 YP_694820.1 CDS CPF_0363 NC_008261.1 438159 438710 D hypothetical protein 438159..438710 Clostridium perfringens ATCC 13124 4202356 YP_694821.2 CDS CPF_0364 NC_008261.1 438829 439407 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 438829..439407 Clostridium perfringens ATCC 13124 4201462 YP_694822.1 CDS CPF_0365 NC_008261.1 439756 441549 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 439756..441549 Clostridium perfringens ATCC 13124 4203303 YP_694823.1 CDS CPF_0366 NC_008261.1 441948 443681 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 441948..443681 Clostridium perfringens ATCC 13124 4203591 YP_694824.1 CDS CPF_0367 NC_008261.1 443674 445455 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 443674..445455 Clostridium perfringens ATCC 13124 4202870 YP_694825.1 CDS CPF_0368 NC_008261.1 445536 445934 R identified by match to protein family HMM PF02915; hypothetical protein complement(445536..445934) Clostridium perfringens ATCC 13124 4203095 YP_694826.1 CDS CPF_0369 NC_008261.1 446200 447228 D identified by match to protein family HMM PF01183; glycosyl hydrolase 446200..447228 Clostridium perfringens ATCC 13124 4201291 YP_694827.1 CDS CPF_0370 NC_008261.1 447486 447884 D identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; toxin secretion/phage lysis holin 447486..447884 Clostridium perfringens ATCC 13124 4203687 YP_694828.1 CDS CPF_0371 NC_008261.1 447929 448999 R FAD/NAD(P)-binding domain; oxidoreductase complement(447929..448999) Clostridium perfringens ATCC 13124 4201968 YP_694829.1 CDS CPF_0372 NC_008261.1 449260 450180 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(449260..450180) Clostridium perfringens ATCC 13124 4202326 YP_694830.1 CDS CPF_0373 NC_008261.1 450585 451403 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 450585..451403 Clostridium perfringens ATCC 13124 4201949 YP_694831.1 CDS CPF_0374 NC_008261.1 451426 452157 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(451426..452157) Clostridium perfringens ATCC 13124 4201588 YP_694832.1 CDS udp NC_008261.1 452392 453177 D identified by similarity to SP:P12758; match to protein family HMM PF01048; match to protein family HMM TIGR01718; uridine phosphorylase 452392..453177 Clostridium perfringens ATCC 13124 4201697 YP_694833.1 CDS deoB NC_008261.1 453344 454534 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 453344..454534 Clostridium perfringens ATCC 13124 4202579 YP_694834.1 CDS CPF_0377 NC_008261.1 454962 456407 R identified by match to protein family HMM PF00324; match to protein family HMM PF01490; arginine/ornithine antiporter complement(454962..456407) Clostridium perfringens ATCC 13124 4203559 YP_694835.1 CDS CPF_0378 NC_008261.1 456453 457415 R identified by match to protein family HMM PF02329; match to protein family HMM TIGR00541; histidine decarboxylase, pyruvoyl type complement(456453..457415) Clostridium perfringens ATCC 13124 4202611 YP_694836.1 CDS CPF_0379 NC_008261.1 457883 458716 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 457883..458716 Clostridium perfringens ATCC 13124 4201742 YP_694837.1 CDS CPF_0380 NC_008261.1 458841 458993 D hypothetical protein 458841..458993 Clostridium perfringens ATCC 13124 4201734 YP_694838.1 CDS garR NC_008261.1 459461 460324 D identified by similarity to SP:P23523; match to protein family HMM PF03446; 2-hydroxy-3-oxopropionate reductase 459461..460324 Clostridium perfringens ATCC 13124 4203822 YP_694839.1 CDS nadA NC_008261.1 460631 461536 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 460631..461536 Clostridium perfringens ATCC 13124 4203313 YP_694840.1 CDS nadB NC_008261.1 461541 462860 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 461541..462860 Clostridium perfringens ATCC 13124 4201775 YP_694841.1 CDS nadC NC_008261.1 462817 463656 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 462817..463656 Clostridium perfringens ATCC 13124 4203149 YP_694842.1 CDS CPF_0385 NC_008261.1 463973 465331 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease complement(463973..465331) Clostridium perfringens ATCC 13124 4202879 YP_694843.1 CDS CPF_0386 NC_008261.1 466007 466825 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 466007..466825 Clostridium perfringens ATCC 13124 4203408 YP_694844.1 CDS CPF_0387 NC_008261.1 466915 467592 D identified by similarity to SP:P31215; match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter PnuC 466915..467592 Clostridium perfringens ATCC 13124 4203692 YP_694845.1 CDS CPF_0388 NC_008261.1 467626 468267 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 467626..468267 Clostridium perfringens ATCC 13124 4201363 YP_694846.1 CDS CPF_0389 NC_008261.1 468492 468809 D hypothetical protein 468492..468809 Clostridium perfringens ATCC 13124 4202723 YP_694847.1 CDS CPF_0390 NC_008261.1 468822 469433 D hypothetical protein 468822..469433 Clostridium perfringens ATCC 13124 4203686 YP_694848.1 CDS CPF_0391 NC_008261.1 469640 470176 D identified by similarity to GB:AAO35738.1; hypothetical protein 469640..470176 Clostridium perfringens ATCC 13124 4203607 YP_694849.1 CDS brnQ NC_008261.1 470911 472248 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 470911..472248 Clostridium perfringens ATCC 13124 4203183 YP_694850.1 CDS CPF_0393 NC_008261.1 472504 473376 D identified by match to protein family HMM PF02588; hypothetical protein 472504..473376 Clostridium perfringens ATCC 13124 4201184 YP_694851.1 CDS CPF_0394 NC_008261.1 473690 476701 D identified by match to protein family HMM PF00746; match to protein family HMM PF02278; match to protein family HMM PF08124; match to protein family HMM TIGR01167; polysaccharide lyase 8 473690..476701 Clostridium perfringens ATCC 13124 4203299 YP_694852.1 CDS kduI NC_008261.1 476808 477638 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 476808..477638 Clostridium perfringens ATCC 13124 4203277 YP_694853.1 CDS kduD NC_008261.1 477654 478430 D Involved in the metabolism of 2-deoxyglucose; 2-deoxy-D-gluconate 3-dehydrogenase 477654..478430 Clostridium perfringens ATCC 13124 4201226 YP_694854.1 CDS CPF_0397 NC_008261.1 478427 479068 D identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 478427..479068 Clostridium perfringens ATCC 13124 4203729 YP_694855.1 CDS CPF_0398 NC_008261.1 479072 480091 D identified by match to protein family HMM PF00294; PfkB family kinase 479072..480091 Clostridium perfringens ATCC 13124 4202454 YP_694856.1 CDS kduI NC_008261.1 480256 481086 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 480256..481086 Clostridium perfringens ATCC 13124 4201085 YP_694857.1 CDS CPF_0400 NC_008261.1 481103 482293 D identified by similarity to GB:BAA84216.1; match to protein family HMM PF07470; glucuronyl hydrolase 481103..482293 Clostridium perfringens ATCC 13124 4201470 YP_694858.1 CDS CPF_0401 NC_008261.1 482310 482798 D identified by match to protein family HMM PF03830; PTS system mannose/fructose/sorbose family transporter subunit IIB 482310..482798 Clostridium perfringens ATCC 13124 4201080 YP_694859.1 CDS CPF_0402 NC_008261.1 482846 483637 D identified by match to protein family HMM PF03609; PTS system mannose/fructose/sorbose family transporter subunit IIC 482846..483637 Clostridium perfringens ATCC 13124 4202714 YP_694860.1 CDS CPF_0403 NC_008261.1 483627 484436 D identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID 483627..484436 Clostridium perfringens ATCC 13124 4201969 YP_694861.1 CDS CPF_0404 NC_008261.1 484506 484919 D identified by match to protein family HMM PF03610; PTS system mannose/fructose/sorbose family transporter subunit IIA 484506..484919 Clostridium perfringens ATCC 13124 4202967 YP_694862.1 CDS CPF_0405 NC_008261.1 484922 485200 D identified by match to protein family HMM PF02699; preprotein translocase subunit YajC 484922..485200 Clostridium perfringens ATCC 13124 4203270 YP_694863.1 CDS CPF_0406 NC_008261.1 485340 487358 D identified by match to protein family HMM PF07940; heparinase II/III-like protein 485340..487358 Clostridium perfringens ATCC 13124 4201126 YP_694864.1 CDS CPF_0407 NC_008261.1 487392 488405 D identified by match to protein family HMM PF00532; LacI family transcriptional regulator 487392..488405 Clostridium perfringens ATCC 13124 4203295 YP_694865.1 CDS CPF_0408 NC_008261.1 488700 490046 D identified by match to protein family HMM PF01565; match to protein family HMM PF08031; reticuline oxidase 488700..490046 Clostridium perfringens ATCC 13124 4201988 YP_694866.1 CDS CPF_0409 NC_008261.1 490346 490699 D identified by similarity to GB:AAO80898.1; hypothetical protein 490346..490699 Clostridium perfringens ATCC 13124 4203443 YP_694867.1 CDS CPF_0410 NC_008261.1 490894 491718 D identified by similarity to GB:AAM24960.1; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 490894..491718 Clostridium perfringens ATCC 13124 4201285 YP_694868.1 CDS CPF_0411 NC_008261.1 491866 493287 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD-binding 491866..493287 Clostridium perfringens ATCC 13124 4202415 YP_694869.1 CDS CPF_0412 NC_008261.1 493292 494182 D identified by similarity to GB:AAO36901.1; match to protein family HMM PF07992; oxidoreductase 493292..494182 Clostridium perfringens ATCC 13124 4203584 YP_694870.1 CDS CPF_0413 NC_008261.1 494423 494800 D identified by similarity to GB:AAK47746.1; hypothetical protein 494423..494800 Clostridium perfringens ATCC 13124 4203759 YP_694871.1 CDS CPF_0414 NC_008261.1 495016 495588 D identified by match to protein family HMM PF00484; carbonic anhydrase 495016..495588 Clostridium perfringens ATCC 13124 4201867 YP_694872.1 CDS CPF_0415 NC_008261.1 495732 496370 D identified by similarity to GB:AAN58407.1; match to protein family HMM PF06541; hypothetical protein 495732..496370 Clostridium perfringens ATCC 13124 4201827 YP_694873.1 CDS CPF_0416 NC_008261.1 496395 496784 D identified by similarity to GB:AAO36906.1; hypothetical protein 496395..496784 Clostridium perfringens ATCC 13124 4201453 YP_694874.1 CDS hsp90 NC_008261.1 497117 498988 D molecular chaperone; heat shock protein 90 497117..498988 Clostridium perfringens ATCC 13124 4201664 YP_694875.1 CDS CPF_0418 NC_008261.1 499216 500817 D identified by similarity to GB:AAK81170.1; hypothetical protein 499216..500817 Clostridium perfringens ATCC 13124 4201880 YP_694876.1 CDS CPF_0419 NC_008261.1 500854 501573 D identified by similarity to GB:AAK56814.1; hypothetical protein 500854..501573 Clostridium perfringens ATCC 13124 4200949 YP_694877.1 CDS CPF_0420 NC_008261.1 501760 502752 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 501760..502752 Clostridium perfringens ATCC 13124 4202842 YP_694878.1 CDS CPF_0421 NC_008261.1 503188 504852 D identified by similarity to SP:P29094; match to protein family HMM PF00128; oligo-1,6-glucosidase 503188..504852 Clostridium perfringens ATCC 13124 4201891 YP_694879.1 CDS CPF_0422 NC_008261.1 505111 506766 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003; PTS system transporter subunit IIBC 505111..506766 Clostridium perfringens ATCC 13124 4203432 YP_694880.1 CDS CPF_0423 NC_008261.1 506777 507568 D identified by match to protein family HMM PF03372; hypothetical protein 506777..507568 Clostridium perfringens ATCC 13124 4203950 YP_694881.1 CDS CPF_0424 NC_008261.1 508224 508961 D identified by similarity to SP:P37965; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 508224..508961 Clostridium perfringens ATCC 13124 4203569 YP_694882.1 CDS CPF_0425 NC_008261.1 509058 510344 D identified by similarity to SP:P46907; match to protein family HMM PF07690; major facilitator family protein 509058..510344 Clostridium perfringens ATCC 13124 4203102 YP_694883.1 CDS CPF_0426 NC_008261.1 510845 513457 D identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573; helicase, UvrD/REP/exonuclease 510845..513457 Clostridium perfringens ATCC 13124 4201211 YP_694884.1 CDS trmB NC_008261.1 513634 514293 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 513634..514293 Clostridium perfringens ATCC 13124 4203736 YP_694885.1 CDS CPF_0428 NC_008261.1 514812 516095 D identified by similarity to PIR:AG1527; match to protein family HMM PF06824; hypothetical protein 514812..516095 Clostridium perfringens ATCC 13124 4201273 YP_694886.1 CDS CPF_0429 NC_008261.1 516563 517141 D hypothetical protein 516563..517141 Clostridium perfringens ATCC 13124 4201868 YP_694887.1 CDS CPF_0430 NC_008261.1 517372 517527 D hypothetical protein 517372..517527 Clostridium perfringens ATCC 13124 4201308 YP_694888.1 CDS CPF_0431 NC_008261.1 517919 518446 D hypothetical protein 517919..518446 Clostridium perfringens ATCC 13124 4202187 YP_694889.1 CDS lepB NC_008261.1 518534 519076 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(518534..519076) Clostridium perfringens ATCC 13124 4203251 YP_694890.1 CDS CPF_0433 NC_008261.1 519284 520126 D identified by similarity to GB:AAP09437.1; hypothetical protein 519284..520126 Clostridium perfringens ATCC 13124 4201794 YP_694891.1 CDS CPF_0434 NC_008261.1 520409 521248 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 520409..521248 Clostridium perfringens ATCC 13124 4201857 YP_694892.1 CDS CPF_0435 NC_008261.1 521332 522627 D identified by match to protein family HMM PF07656; lipoprotein 521332..522627 Clostridium perfringens ATCC 13124 4203799 YP_694893.1 CDS CPF_0436 NC_008261.1 523004 523492 D identified by match to protein family HMM PF00583; acetyltransferase 523004..523492 Clostridium perfringens ATCC 13124 4203623 YP_694894.1 CDS CPF_0437 NC_008261.1 523551 523886 R identified by similarity to PIR:G97099; hypothetical protein complement(523551..523886) Clostridium perfringens ATCC 13124 4201570 YP_694895.1 CDS CPF_0438 NC_008261.1 523892 524308 R identified by similarity to GB:AAT04397.1; hypothetical protein complement(523892..524308) Clostridium perfringens ATCC 13124 4201756 YP_694896.1 CDS CPF_0439 NC_008261.1 524854 526191 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 524854..526191 Clostridium perfringens ATCC 13124 4203745 YP_694897.1 CDS CPF_0440 NC_008261.1 526466 527518 D identified by similarity to GB:AAD03802.1; match to protein family HMM PF01547; iron ABC transporter substrate-binding protein 526466..527518 Clostridium perfringens ATCC 13124 4202366 YP_694898.1 CDS CPF_0441 NC_008261.1 527509 529110 D identified by similarity to SP:P71338; match to protein family HMM PF00528; iron ABC transporter permease 527509..529110 Clostridium perfringens ATCC 13124 4203589 YP_694899.1 CDS CPF_0442 NC_008261.1 529113 529793 D identified by similarity to GB:AAL94516.1; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 529113..529793 Clostridium perfringens ATCC 13124 4200988 YP_694900.1 CDS CPF_0443 NC_008261.1 530116 530775 D identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite/nitrite reductase 530116..530775 Clostridium perfringens ATCC 13124 4202062 YP_694901.1 CDS CPF_0444 NC_008261.1 530965 531138 D identified by match to protein family HMM PF04324; BFD-like iron-sulfur cluster-binding protein 530965..531138 Clostridium perfringens ATCC 13124 4203945 YP_694902.1 CDS CPF_0445 NC_008261.1 531404 531775 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 531404..531775 Clostridium perfringens ATCC 13124 4203487 YP_694903.1 CDS CPF_0446 NC_008261.1 531809 532672 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 531809..532672 Clostridium perfringens ATCC 13124 4202826 YP_694904.1 CDS CPF_0447 NC_008261.1 532674 533300 D identified by similarity to GB:AAP28153.1; hypothetical protein 532674..533300 Clostridium perfringens ATCC 13124 4202669 YP_694905.1 CDS CPF_0448 NC_008261.1 533302 533970 D identified by similarity to GB:AAS12417.1; hypothetical protein 533302..533970 Clostridium perfringens ATCC 13124 4203805 YP_694906.1 CDS CPF_0449 NC_008261.1 534086 534466 D identified by match to protein family HMM PF00903; lactoylglutathione lyase 534086..534466 Clostridium perfringens ATCC 13124 4201236 YP_694907.1 CDS CPF_0450 NC_008261.1 534603 535460 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(534603..535460) Clostridium perfringens ATCC 13124 4201227 YP_694908.1 CDS CPF_0451 NC_008261.1 535649 536797 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 535649..536797 Clostridium perfringens ATCC 13124 4203702 YP_694909.1 CDS CPF_0452 NC_008261.1 536987 537310 D identified by similarity to GB:AAO35553.1; hypothetical protein 536987..537310 Clostridium perfringens ATCC 13124 4201560 YP_694910.1 CDS CPF_0453 NC_008261.1 537424 537816 D identified by similarity to GB:AAP24625.1; match to protein family HMM PF00903; glyoxalase 537424..537816 Clostridium perfringens ATCC 13124 4202857 YP_694911.1 CDS CPF_0454 NC_008261.1 538113 540347 D identified by similarity to GB:AAS41916.1; match to protein family HMM PF06347; hypothetical protein 538113..540347 Clostridium perfringens ATCC 13124 4203307 YP_694912.1 CDS CPF_0455 NC_008261.1 540545 541330 R identified by similarity to SP:P39075; match to protein family HMM PF00376; MerR family transcriptional regulator complement(540545..541330) Clostridium perfringens ATCC 13124 4203572 YP_694913.1 CDS CPF_0456 NC_008261.1 541443 543263 D hypothetical protein 541443..543263 Clostridium perfringens ATCC 13124 4203858 YP_694914.1 CDS CPF_0457 NC_008261.1 543568 544077 D DedA family protein 543568..544077 Clostridium perfringens ATCC 13124 4202000 YP_694915.1 CDS CPF_0458 NC_008261.1 544136 544768 D identified by similarity to GB:AAL95465.1; hypothetical protein 544136..544768 Clostridium perfringens ATCC 13124 4202306 YP_694916.1 CDS CPF_0459 NC_008261.1 544990 545694 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 544990..545694 Clostridium perfringens ATCC 13124 4203787 YP_694917.1 CDS CPF_0460 NC_008261.1 545669 547900 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 545669..547900 Clostridium perfringens ATCC 13124 4200985 YP_694918.1 CDS CPF_0461 NC_008261.1 548090 548392 R hypothetical protein complement(548090..548392) Clostridium perfringens ATCC 13124 4203129 YP_694919.1 CDS CPF_0462 NC_008261.1 548818 549855 D hypothetical protein 548818..549855 Clostridium perfringens ATCC 13124 4203946 YP_694920.1 CDS CPF_0463 NC_008261.1 550623 551036 D identified by similarity to GB:BAB80172.1; hypothetical protein 550623..551036 Clostridium perfringens ATCC 13124 4203263 YP_694921.1 CDS CPF_0464 NC_008261.1 551513 552211 D identified by match to protein family HMM PF02706; capsule chain length determinant protein 551513..552211 Clostridium perfringens ATCC 13124 4203910 YP_694922.1 CDS CPF_0465 NC_008261.1 552224 552877 D capsular polysaccharide biosynthesis protein 552224..552877 Clostridium perfringens ATCC 13124 4202072 YP_694923.1 CDS CPF_0466 NC_008261.1 553078 553746 D identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis protein 553078..553746 Clostridium perfringens ATCC 13124 4201947 YP_694924.1 CDS CPF_0468 NC_008261.1 554774 556003 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase 554774..556003 Clostridium perfringens ATCC 13124 4203156 YP_694925.1 CDS CPF_0470 NC_008261.1 557181 557780 D hexapeptide repeat-containing transferase 557181..557780 Clostridium perfringens ATCC 13124 4202547 YP_694926.1 CDS CPF_0471 NC_008261.1 557796 559688 D identified by similarity to GB:BAC93122.1; match to protein family HMM PF07940; heparinase II/III-like protein 557796..559688 Clostridium perfringens ATCC 13124 4203483 YP_694927.1 CDS CPF_0472 NC_008261.1 559699 561078 D identified by similarity to SP:P39860; capK protein 559699..561078 Clostridium perfringens ATCC 13124 4201350 YP_694928.1 CDS CPF_0473 NC_008261.1 561106 562176 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 561106..562176 Clostridium perfringens ATCC 13124 4202977 YP_694929.1 CDS CPF_0474 NC_008261.1 562178 563644 D identified by match to protein family HMM PF01943; polysaccharide transporter protein 562178..563644 Clostridium perfringens ATCC 13124 4202180 YP_694930.1 CDS CPF_0475 NC_008261.1 563631 564848 D hypothetical protein 563631..564848 Clostridium perfringens ATCC 13124 4201436 YP_694931.1 CDS CPF_0476 NC_008261.1 564848 565999 D hypothetical protein 564848..565999 Clostridium perfringens ATCC 13124 4202234 YP_694932.1 CDS CPF_0477 NC_008261.1 566079 567206 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 566079..567206 Clostridium perfringens ATCC 13124 4201237 YP_694933.1 CDS CPF_0478 NC_008261.1 567223 568551 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 567223..568551 Clostridium perfringens ATCC 13124 4202380 YP_694934.1 CDS rfbA NC_008261.1 568563 569444 D identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 568563..569444 Clostridium perfringens ATCC 13124 4203701 YP_694935.1 CDS rfbC NC_008261.1 569550 570119 D identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 569550..570119 Clostridium perfringens ATCC 13124 4202979 YP_694936.1 CDS rfbD NC_008261.1 570133 571017 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 570133..571017 Clostridium perfringens ATCC 13124 4201357 YP_694937.1 CDS rfbB NC_008261.1 571045 572094 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 571045..572094 Clostridium perfringens ATCC 13124 4202087 YP_694938.1 CDS galU NC_008261.1 572270 573190 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 572270..573190 Clostridium perfringens ATCC 13124 4203163 YP_694939.1 CDS CPF_0484 NC_008261.1 573555 574202 D identified by similarity to SP:P17869; match to protein family HMM TIGR02937; RNA polymerase sigma factor 573555..574202 Clostridium perfringens ATCC 13124 4203574 YP_694940.1 CDS CPF_0485 NC_008261.1 574617 576845 D hypothetical protein 574617..576845 Clostridium perfringens ATCC 13124 4203124 YP_694941.1 CDS galE NC_008261.1 576923 577939 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 576923..577939 Clostridium perfringens ATCC 13124 4202150 YP_694942.1 CDS galU NC_008261.1 578221 579165 D identified by similarity to SP:Q05852; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 578221..579165 Clostridium perfringens ATCC 13124 4203627 YP_694943.1 CDS CPF_0488 NC_008261.1 579492 580121 D hypothetical protein 579492..580121 Clostridium perfringens ATCC 13124 4202710 YP_694944.1 CDS CPF_0490 NC_008261.1 580766 585439 D identified by match to protein family HMM PF01473; cell wall binding repeat-containing protein 580766..585439 Clostridium perfringens ATCC 13124 4203905 YP_694945.1 CDS CPF_0491 NC_008261.1 585866 588070 D identified by similarity to GB:AAD23585.1; match to protein family HMM PF02065; alpha-galactosidase 585866..588070 Clostridium perfringens ATCC 13124 4201373 YP_694946.1 CDS CPF_0492 NC_008261.1 588204 588953 R identified by match to protein family HMM PF07170; sortase complement(588204..588953) Clostridium perfringens ATCC 13124 4203136 YP_694947.1 CDS sipW NC_008261.1 589192 589716 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228; signal peptidase I 589192..589716 Clostridium perfringens ATCC 13124 4203601 YP_694948.1 CDS CPF_0494 NC_008261.1 589770 590405 D hypothetical protein 589770..590405 Clostridium perfringens ATCC 13124 4202520 YP_694949.1 CDS CPF_0495 NC_008261.1 590453 591151 D identified by similarity to GB:BAC14481.1; match to protein family HMM TIGR01167; hypothetical protein 590453..591151 Clostridium perfringens ATCC 13124 4201807 YP_694950.1 CDS CPF_0496 NC_008261.1 591175 591882 D identified by similarity to GB:BAB80221.1; hypothetical protein 591175..591882 Clostridium perfringens ATCC 13124 4202337 YP_694951.1 CDS CPF_0497 NC_008261.1 591902 593644 D identified by match to protein family HMM PF00092; von Willebrand factor A 591902..593644 Clostridium perfringens ATCC 13124 4202127 YP_694952.1 CDS CPF_0498 NC_008261.1 593925 594641 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 593925..594641 Clostridium perfringens ATCC 13124 4202139 YP_694953.1 CDS CPF_0499 NC_008261.1 594646 595941 D identified by match to protein family HMM PF02518; sensor histidine kinase 594646..595941 Clostridium perfringens ATCC 13124 4201605 YP_694954.1 CDS CPF_0500 NC_008261.1 596119 596925 D hypothetical protein 596119..596925 Clostridium perfringens ATCC 13124 4203902 YP_694955.1 CDS CPF_0501 NC_008261.1 597293 597736 D identified by match to protein family HMM PF00359; PTS system L-ascorbate family IIA subunit 597293..597736 Clostridium perfringens ATCC 13124 4202983 YP_694956.1 CDS CPF_0502 NC_008261.1 597914 598186 D identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 597914..598186 Clostridium perfringens ATCC 13124 4201338 YP_694957.1 CDS ulaA NC_008261.1 598227 599498 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 598227..599498 Clostridium perfringens ATCC 13124 4203889 YP_694958.1 CDS CPF_0504 NC_008261.1 599856 600650 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 599856..600650 Clostridium perfringens ATCC 13124 4201760 YP_694959.1 CDS CPF_0505 NC_008261.1 600784 601230 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(600784..601230) Clostridium perfringens ATCC 13124 4202076 YP_694960.1 CDS CPF_0506 NC_008261.1 601555 603852 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 601555..603852 Clostridium perfringens ATCC 13124 4203175 YP_694961.1 CDS CPF_0507 NC_008261.1 603845 605701 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 603845..605701 Clostridium perfringens ATCC 13124 4202031 YP_694962.1 CDS CPF_0508 NC_008261.1 606198 607079 D hypothetical protein 606198..607079 Clostridium perfringens ATCC 13124 4203135 YP_694963.1 CDS CPF_0509 NC_008261.1 607334 608383 D identified by match to protein family HMM PF03547; auxin efflux carrier family protein 607334..608383 Clostridium perfringens ATCC 13124 4200974 YP_694964.1 CDS CPF_0510 NC_008261.1 608710 609708 D identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 608710..609708 Clostridium perfringens ATCC 13124 4202861 YP_694965.1 CDS CPF_0511 NC_008261.1 610004 611554 D identified by match to protein family HMM PF02518; sensor histidine kinase 610004..611554 Clostridium perfringens ATCC 13124 4201598 YP_694966.1 CDS CPF_0512 NC_008261.1 611554 612222 D identified by match to protein family HMM PF00072; two-component response regulator 611554..612222 Clostridium perfringens ATCC 13124 4201325 YP_694967.1 CDS CPF_0513 NC_008261.1 612303 612482 D hypothetical protein 612303..612482 Clostridium perfringens ATCC 13124 4202575 YP_694968.1 CDS CPF_0514 NC_008261.1 612640 613170 D lipoprotein 612640..613170 Clostridium perfringens ATCC 13124 4202461 YP_694969.1 CDS CPF_0515 NC_008261.1 613635 613775 D hypothetical protein 613635..613775 Clostridium perfringens ATCC 13124 4203340 YP_694970.1 CDS CPF_0516 NC_008261.1 614301 614942 D identified by match to protein family HMM PF02659; hypothetical protein 614301..614942 Clostridium perfringens ATCC 13124 4201624 YP_694971.1 CDS CPF_0517 NC_008261.1 615154 615567 D hypothetical protein 615154..615567 Clostridium perfringens ATCC 13124 4203628 YP_694972.1 CDS CPF_0518 NC_008261.1 615878 616993 D identified by match to protein family HMM PF00465; NAD-dependent 4-hydroxybutyrate dehydrogenase 615878..616993 Clostridium perfringens ATCC 13124 4202097 YP_694973.1 CDS CPF_0519 NC_008261.1 617002 617190 D hypothetical protein 617002..617190 Clostridium perfringens ATCC 13124 4201957 YP_694974.1 CDS CPF_0520 NC_008261.1 617226 617906 D identified by match to protein family HMM PF02080; TrkA domain-containing protein 617226..617906 Clostridium perfringens ATCC 13124 4203675 YP_694975.1 CDS CPF_0521 NC_008261.1 618021 618473 R identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator complement(618021..618473) Clostridium perfringens ATCC 13124 4202070 YP_694976.1 CDS CPF_0522 NC_008261.1 618727 619860 D identified by match to protein family HMM PF01594; hypothetical protein 618727..619860 Clostridium perfringens ATCC 13124 4202726 YP_694977.1 CDS CPF_0523 NC_008261.1 620264 621655 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 620264..621655 Clostridium perfringens ATCC 13124 4201912 YP_694978.1 CDS CPF_0524 NC_008261.1 621817 622032 R hypothetical protein complement(621817..622032) Clostridium perfringens ATCC 13124 4200958 YP_694979.1 CDS CPF_0525 NC_008261.1 622046 622285 R identified by similarity to GB:AAY61763.1; hypothetical protein complement(622046..622285) Clostridium perfringens ATCC 13124 4202063 YP_694980.1 CDS CPF_0526 NC_008261.1 622525 624075 D identified by similarity to GB:BAA06530.1; match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase-like protein 622525..624075 Clostridium perfringens ATCC 13124 4203948 YP_694981.1 CDS speD NC_008261.1 624388 625203 D S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 624388..625203 Clostridium perfringens ATCC 13124 4203924 YP_694982.1 CDS CPF_0528 NC_008261.1 625221 626675 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 625221..626675 Clostridium perfringens ATCC 13124 4202484 YP_694983.1 CDS speE NC_008261.1 626690 627541 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 626690..627541 Clostridium perfringens ATCC 13124 4203740 YP_694984.1 CDS speB NC_008261.1 627528 628385 D identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 627528..628385 Clostridium perfringens ATCC 13124 4201386 YP_694985.1 CDS CPF_0531 NC_008261.1 628699 628962 R identified by similarity to GB:BAB80258.1; match to protein family HMM PF06961; hypothetical protein complement(628699..628962) Clostridium perfringens ATCC 13124 4201019 YP_694986.1 CDS CPF_0532 NC_008261.1 629171 632692 D identified by similarity to SP:P29767; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF02012; match to protein family HMM PF02973; exo-alpha-sialidase 629171..632692 Clostridium perfringens ATCC 13124 4202243 YP_694987.1 CDS CPF_0533 NC_008261.1 632838 633479 D identified by similarity to GB:AAM32797.1; hypothetical protein 632838..633479 Clostridium perfringens ATCC 13124 4203613 YP_694988.1 CDS CPF_0534 NC_008261.1 633592 636261 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(633592..636261) Clostridium perfringens ATCC 13124 4203726 YP_694989.1 CDS CPF_0535 NC_008261.1 636553 637209 D identified by match to protein family HMM PF02525; flavodoxin family protein 636553..637209 Clostridium perfringens ATCC 13124 4202120 YP_694990.1 CDS CPF_0536 NC_008261.1 638161 638265 D hypothetical protein 638161..638265 Clostridium perfringens ATCC 13124 4201986 YP_694991.1 CDS CPF_0537 NC_008261.1 638514 639650 D identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline transport, ATP-binding protein 638514..639650 Clostridium perfringens ATCC 13124 4203314 YP_694992.1 CDS CPF_0538 NC_008261.1 639643 641196 D identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein 639643..641196 Clostridium perfringens ATCC 13124 4202883 YP_694993.1 CDS CPF_0539 NC_008261.1 641467 642030 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954; RNA polymerase sigma-70 factor 641467..642030 Clostridium perfringens ATCC 13124 4203505 YP_694994.1 CDS CPF_0540 NC_008261.1 642023 643114 D identified by similarity to GB:AAO35222.1; hypothetical protein 642023..643114 Clostridium perfringens ATCC 13124 4202921 YP_694995.1 CDS treB NC_008261.1 643462 644883 D identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 643462..644883 Clostridium perfringens ATCC 13124 4203920 YP_694996.2 CDS treC NC_008261.1 645087 646754 D identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 645087..646754 Clostridium perfringens ATCC 13124 4202044 YP_694997.1 CDS treR NC_008261.1 647019 647726 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 647019..647726 Clostridium perfringens ATCC 13124 4201449 YP_694998.1 CDS spoVD NC_008261.1 648176 650341 R identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D complement(648176..650341) Clostridium perfringens ATCC 13124 4202522 YP_694999.1 CDS CPF_0545 NC_008261.1 650904 651377 D identified by similarity to SP:P00806; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 650904..651377 Clostridium perfringens ATCC 13124 4201432 YP_695000.2 CDS ribD NC_008261.1 651933 653048 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 651933..653048 Clostridium perfringens ATCC 13124 4202761 YP_695001.1 CDS ribE NC_008261.1 653070 653723 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 653070..653723 Clostridium perfringens ATCC 13124 4203629 YP_695002.1 CDS ribA NC_008261.1 653875 655074 D identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 653875..655074 Clostridium perfringens ATCC 13124 4202423 YP_695003.1 CDS ribH NC_008261.1 655201 655662 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 655201..655662 Clostridium perfringens ATCC 13124 4200968 YP_695004.1 CDS CPF_0550 NC_008261.1 655789 656781 R identified by match to protein family HMM PF01473; cell wall binding repeat-containing protein complement(655789..656781) Clostridium perfringens ATCC 13124 4202039 YP_695005.1 CDS CPF_0551 NC_008261.1 656885 657292 R identified by similarity to GB:BAD76119.1; match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(656885..657292) Clostridium perfringens ATCC 13124 4203755 YP_695006.1 CDS CPF_0552 NC_008261.1 657691 657939 D identified by similarity to PIR:F72407; hypothetical protein 657691..657939 Clostridium perfringens ATCC 13124 4202819 YP_695007.1 CDS CPF_0553 NC_008261.1 658230 660434 D identified by similarity to GB:AAN25428.1; match to protein family HMM TIGR02336; hypothetical protein 658230..660434 Clostridium perfringens ATCC 13124 4202999 YP_695008.1 CDS CPF_0554 NC_008261.1 660619 662370 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 660619..662370 Clostridium perfringens ATCC 13124 4203935 YP_695009.1 CDS CPF_0555 NC_008261.1 662383 663972 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 662383..663972 Clostridium perfringens ATCC 13124 4201172 YP_695010.1 CDS CPF_0556 NC_008261.1 664125 665510 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 664125..665510 Clostridium perfringens ATCC 13124 4203679 YP_695011.1 CDS CPF_0557 NC_008261.1 665589 666515 D identified by match to protein family HMM PF00528; ABC transporter permease 665589..666515 Clostridium perfringens ATCC 13124 4201351 YP_695012.1 CDS CPF_0558 NC_008261.1 666517 667398 D identified by match to protein family HMM PF00528; ABC transporter permease 666517..667398 Clostridium perfringens ATCC 13124 4201630 YP_695013.2 CDS CPF_0559 NC_008261.1 667634 668329 D DedA family protein 667634..668329 Clostridium perfringens ATCC 13124 4203016 YP_695014.1 CDS CPF_0560 NC_008261.1 668319 669431 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; (Fe-S)-binding protein 668319..669431 Clostridium perfringens ATCC 13124 4202658 YP_695015.1 CDS CPF_0561 NC_008261.1 669595 670182 D identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase 669595..670182 Clostridium perfringens ATCC 13124 4202367 YP_695016.1 CDS CPF_0562 NC_008261.1 670467 671099 D identified by similarity to GB:AAR33720.1; match to protein family HMM PF01865; hypothetical protein 670467..671099 Clostridium perfringens ATCC 13124 4202135 YP_695017.1 CDS CPF_0563 NC_008261.1 671092 672090 D identified by match to protein family HMM PF01384; phosphate transporter family protein 671092..672090 Clostridium perfringens ATCC 13124 4203189 YP_695018.1 CDS fruA NC_008261.1 672372 674264 R identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system fructose-specific transporter subunit IIABC complement(672372..674264) Clostridium perfringens ATCC 13124 4202881 YP_695019.1 CDS fruK NC_008261.1 674268 675188 R identified by similarity to SP:O31714; match to protein family HMM PF00294; 1-phosphofructokinase complement(674268..675188) Clostridium perfringens ATCC 13124 4201419 YP_695020.1 CDS CPF_0566 NC_008261.1 675188 675934 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator complement(675188..675934) Clostridium perfringens ATCC 13124 4202915 YP_695021.1 CDS CPF_0567 NC_008261.1 676225 676677 D hypothetical protein 676225..676677 Clostridium perfringens ATCC 13124 4201250 YP_695022.1 CDS CPF_0568 NC_008261.1 676728 677828 R identified by match to protein family HMM PF01594; hypothetical protein complement(676728..677828) Clostridium perfringens ATCC 13124 4202525 YP_695023.1 CDS CPF_0569 NC_008261.1 678125 678745 D identified by match to protein family HMM PF00857; isochorismatase 678125..678745 Clostridium perfringens ATCC 13124 4203329 YP_695024.1 CDS CPF_0570 NC_008261.1 679123 680436 D identified by match to protein family HMM PF00654; voltage-gated chloride channel family protein 679123..680436 Clostridium perfringens ATCC 13124 4203817 YP_695025.1 CDS CPF_0571 NC_008261.1 680740 681663 D identified by match to protein family HMM PF04960; glutaminase 680740..681663 Clostridium perfringens ATCC 13124 4200991 YP_695026.1 CDS CPF_0572 NC_008261.1 681964 682686 D identified by match to protein family HMM PF02308; MgtC family protein 681964..682686 Clostridium perfringens ATCC 13124 4203782 YP_695027.1 CDS sfsA NC_008261.1 688429 689121 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 688429..689121 Clostridium perfringens ATCC 13124 4202914 YP_695028.1 CDS CPF_0575 NC_008261.1 689535 690074 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 689535..690074 Clostridium perfringens ATCC 13124 4202151 YP_695029.1 CDS lysA NC_008261.1 690485 691780 D identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 690485..691780 Clostridium perfringens ATCC 13124 4202038 YP_695030.1 CDS CPF_0577 NC_008261.1 692189 692455 D hypothetical protein 692189..692455 Clostridium perfringens ATCC 13124 4201687 YP_695031.1 CDS CPF_0578 NC_008261.1 692458 692988 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 692458..692988 Clostridium perfringens ATCC 13124 4202548 YP_695032.1 CDS ftsH NC_008261.1 693013 695166 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 693013..695166 Clostridium perfringens ATCC 13124 4203953 YP_695033.1 CDS CPF_0580 NC_008261.1 695386 697506 D identified by similarity to GB:BAA23380.1; helicase 695386..697506 Clostridium perfringens ATCC 13124 4201787 YP_695034.1 CDS CPF_0581 NC_008261.1 697962 698798 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 697962..698798 Clostridium perfringens ATCC 13124 4203678 YP_695035.1 CDS CPF_0582 NC_008261.1 698829 699500 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 698829..699500 Clostridium perfringens ATCC 13124 4201546 YP_695036.1 CDS CPF_0583 NC_008261.1 699497 700219 D identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 699497..700219 Clostridium perfringens ATCC 13124 4202385 YP_695037.1 CDS CPF_0584 NC_008261.1 700437 702245 D identified by match to protein family HMM PF00884; sulfatase 700437..702245 Clostridium perfringens ATCC 13124 4203829 YP_695038.1 CDS CPF_0585 NC_008261.1 702497 704341 D identified by match to protein family HMM PF00884; sulfatase 702497..704341 Clostridium perfringens ATCC 13124 4202994 YP_695039.1 CDS CPF_0586 NC_008261.1 704443 705624 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(704443..705624) Clostridium perfringens ATCC 13124 4202207 YP_695040.1 CDS CPF_0587 NC_008261.1 705867 707528 D identified by match to protein family HMM PF00018; match to protein family HMM PF01510; match to protein family HMM PF06347; match to protein family HMM PF07653; N-acetylmuramoyl-L-alanine amidase 705867..707528 Clostridium perfringens ATCC 13124 4203884 YP_695041.1 CDS CPF_0588 NC_008261.1 707670 708965 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 707670..708965 Clostridium perfringens ATCC 13124 4202600 YP_695042.1 CDS CPF_0589 NC_008261.1 709058 709252 R identified by similarity to PIR:E96976; hypothetical protein complement(709058..709252) Clostridium perfringens ATCC 13124 4201780 YP_695043.1 CDS CPF_0590 NC_008261.1 709644 710483 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 709644..710483 Clostridium perfringens ATCC 13124 4202555 YP_695044.1 CDS CPF_0591 NC_008261.1 710691 714020 R identified by match to protein family HMM PF03176; MmpL family membrane protein complement(710691..714020) Clostridium perfringens ATCC 13124 4202902 YP_695045.1 CDS prfC NC_008261.1 714281 715876 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 complement(714281..715876) Clostridium perfringens ATCC 13124 4203113 YP_695046.1 CDS CPF_0593 NC_008261.1 716090 716695 R hypothetical protein complement(716090..716695) Clostridium perfringens ATCC 13124 4201797 YP_695047.1 CDS CPF_0594 NC_008261.1 717071 717871 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 717071..717871 Clostridium perfringens ATCC 13124 4202630 YP_695048.1 CDS CPF_0595 NC_008261.1 717912 718574 D identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397; sugar transferase 717912..718574 Clostridium perfringens ATCC 13124 4201079 YP_695049.1 CDS CPF_0596 NC_008261.1 718575 719489 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 718575..719489 Clostridium perfringens ATCC 13124 4201830 YP_695050.1 CDS rfbA NC_008261.1 719512 720393 D identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 719512..720393 Clostridium perfringens ATCC 13124 4203718 YP_695051.1 CDS rfbC NC_008261.1 720499 721068 D identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 720499..721068 Clostridium perfringens ATCC 13124 4202498 YP_695052.1 CDS rfbD NC_008261.1 721082 721966 D identified by similarity to GB:BAA21509.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 721082..721966 Clostridium perfringens ATCC 13124 4201281 YP_695053.1 CDS rfbB NC_008261.1 721994 723043 D identified by similarity to SP:P55295; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 721994..723043 Clostridium perfringens ATCC 13124 4202447 YP_695054.1 CDS CPF_0601 NC_008261.1 723068 724282 D hypothetical protein 723068..724282 Clostridium perfringens ATCC 13124 4203792 YP_695055.1 CDS CPF_0602 NC_008261.1 724279 725127 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 724279..725127 Clostridium perfringens ATCC 13124 4202830 YP_695056.1 CDS CPF_0603 NC_008261.1 725221 725961 D identified by similarity to GB:BAA32000.1; hypothetical protein 725221..725961 Clostridium perfringens ATCC 13124 4202517 YP_695057.1 CDS CPF_0604 NC_008261.1 725970 727421 D identified by similarity to GB:AAK68914.1; match to protein family HMM PF01943; polysaccharide biosynthesis protein 725970..727421 Clostridium perfringens ATCC 13124 4203732 YP_695058.1 CDS CPF_0605 NC_008261.1 727443 729866 D identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832; cell wall binding repeat-containing protein/mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 727443..729866 Clostridium perfringens ATCC 13124 4203264 YP_695059.1 CDS CPF_0606 NC_008261.1 729995 731647 D identified by match to protein family HMM PF00246; match to protein family HMM PF01473; cell wall binding repeat-containing protein/zinc carboxypeptidase 729995..731647 Clostridium perfringens ATCC 13124 4203859 YP_695060.1 CDS CPF_0607 NC_008261.1 731849 733213 D identified by similarity to PIR:A41971; match to protein family HMM PF01473; cell wall binding repeat-containing protein 731849..733213 Clostridium perfringens ATCC 13124 4201587 YP_695061.1 CDS CPF_0608 NC_008261.1 733418 735286 D identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636; MarR family transcriptional regulator 733418..735286 Clostridium perfringens ATCC 13124 4202488 YP_695062.1 CDS CPF_0609 NC_008261.1 735312 736280 D identified by match to protein family HMM PF00892; hypothetical protein 735312..736280 Clostridium perfringens ATCC 13124 4203733 YP_695063.1 CDS CPF_0610 NC_008261.1 736427 737110 D identified by match to protein family HMM PF00483; nucleotidyl transferase 736427..737110 Clostridium perfringens ATCC 13124 4202008 YP_695064.1 CDS CPF_0611 NC_008261.1 737229 738521 R identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; cell wall binding repeat-containing protein complement(737229..738521) Clostridium perfringens ATCC 13124 4202314 YP_695065.1 CDS CPF_0612 NC_008261.1 738640 739659 R identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(738640..739659) Clostridium perfringens ATCC 13124 4201336 YP_695066.1 CDS brnQ NC_008261.1 739939 741213 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(739939..741213) Clostridium perfringens ATCC 13124 4201420 YP_695067.1 CDS trpS NC_008261.1 741966 742964 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 741966..742964 Clostridium perfringens ATCC 13124 4202831 YP_695068.1 CDS CPF_0615 NC_008261.1 743378 743917 D hypothetical protein 743378..743917 Clostridium perfringens ATCC 13124 4202580 YP_695069.1 CDS CPF_0616 NC_008261.1 744000 745112 D anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 744000..745112 Clostridium perfringens ATCC 13124 4203949 YP_695070.1 CDS pstS NC_008261.1 745323 746153 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 745323..746153 Clostridium perfringens ATCC 13124 4202662 YP_695071.1 CDS pstS NC_008261.1 746377 747195 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 746377..747195 Clostridium perfringens ATCC 13124 4203498 YP_695072.1 CDS pstC NC_008261.1 747277 748164 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 747277..748164 Clostridium perfringens ATCC 13124 4203019 YP_695073.1 CDS pstA NC_008261.1 748167 748991 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 748167..748991 Clostridium perfringens ATCC 13124 4203638 YP_695074.1 CDS pstB NC_008261.1 749009 749770 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 749009..749770 Clostridium perfringens ATCC 13124 4201428 YP_695075.1 CDS phoU NC_008261.1 749795 750448 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 749795..750448 Clostridium perfringens ATCC 13124 4203344 YP_695076.1 CDS CPF_0623 NC_008261.1 750608 751303 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 750608..751303 Clostridium perfringens ATCC 13124 4201620 YP_695077.1 CDS CPF_0624 NC_008261.1 751474 752097 R identified by similarity to PIR:C96972; hypothetical protein complement(751474..752097) Clostridium perfringens ATCC 13124 4201554 YP_695078.1 CDS CPF_0625 NC_008261.1 752131 752547 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(752131..752547) Clostridium perfringens ATCC 13124 4203290 YP_695079.1 CDS glnS NC_008261.1 752961 754619 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(752961..754619) Clostridium perfringens ATCC 13124 4201743 YP_695080.1 CDS CPF_0627 NC_008261.1 754873 755028 R identified by similarity to PIR:A96978; hypothetical protein complement(754873..755028) Clostridium perfringens ATCC 13124 4202319 YP_695081.1 CDS CPF_0628 NC_008261.1 755183 756271 R identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein complement(755183..756271) Clostridium perfringens ATCC 13124 4203078 YP_695082.1 CDS CPF_0629 NC_008261.1 756367 757788 D identified by match to protein family HMM PF03323; spore germination protein 756367..757788 Clostridium perfringens ATCC 13124 4201993 YP_695083.1 CDS CPF_0630 NC_008261.1 757763 758887 D identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; spore germination protein 757763..758887 Clostridium perfringens ATCC 13124 4201904 YP_695084.1 CDS CPF_0631 NC_008261.1 759081 760214 D identified by match to protein family HMM PF04326; ATPase central domain-containing protein 759081..760214 Clostridium perfringens ATCC 13124 4202812 YP_695085.1 CDS CPF_0632 NC_008261.1 760290 760703 D identified by similarity to PIR:D70143; hypothetical protein 760290..760703 Clostridium perfringens ATCC 13124 4203245 YP_695086.1 CDS tyrS NC_008261.1 760987 762207 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 760987..762207 Clostridium perfringens ATCC 13124 4202984 YP_695087.1 CDS CPF_0634 NC_008261.1 762463 763155 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 762463..763155 Clostridium perfringens ATCC 13124 4203165 YP_695088.1 CDS CPF_0635 NC_008261.1 763274 764065 D identified by match to protein family HMM PF04607; relA/spoT family protein 763274..764065 Clostridium perfringens ATCC 13124 4202079 YP_695089.1 CDS CPF_0636 NC_008261.1 764375 765160 D identified by similarity to GB:AAO35900.1; hypothetical protein 764375..765160 Clostridium perfringens ATCC 13124 4203460 YP_695090.1 CDS CPF_0637 NC_008261.1 765278 766393 D identified by similarity to PIR:C97129; match to protein family HMM PF07728; hypothetical protein 765278..766393 Clostridium perfringens ATCC 13124 4202549 YP_695091.1 CDS CPF_0638 NC_008261.1 766407 767744 D identified by similarity to GB:AAO35898.1; hypothetical protein 766407..767744 Clostridium perfringens ATCC 13124 4201690 YP_695092.1 CDS CPF_0639 NC_008261.1 767902 769293 D hypothetical protein 767902..769293 Clostridium perfringens ATCC 13124 4202609 YP_695093.2 CDS CPF_0640 NC_008261.1 769616 771136 D identified by similarity to SP:P44744; hypothetical protein 769616..771136 Clostridium perfringens ATCC 13124 4202427 YP_695094.1 CDS CPF_0641 NC_008261.1 771145 771966 D identified by match to protein family HMM PF00037; match to protein family HMM PF04055; 4Fe-4S ferredoxin 771145..771966 Clostridium perfringens ATCC 13124 4203341 YP_695095.1 CDS CPF_0642 NC_008261.1 772148 772927 R identified by similarity to GB:AAO80924.1; match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator complement(772148..772927) Clostridium perfringens ATCC 13124 4202096 YP_695096.1 CDS CPF_0643 NC_008261.1 773373 774437 D identified by similarity to GB:AAL23202.1; L-ascorbate 6-phosphate lactonase 773373..774437 Clostridium perfringens ATCC 13124 4201443 YP_695097.1 CDS CPF_0644 NC_008261.1 774462 774896 D identified by match to protein family HMM PF00359; PTS system, ascorbate-specific IIA component SgaA 774462..774896 Clostridium perfringens ATCC 13124 4203008 YP_695098.1 CDS CPF_0645 NC_008261.1 775083 776549 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 775083..776549 Clostridium perfringens ATCC 13124 4201429 YP_695099.1 CDS CPF_0646 NC_008261.1 776646 776936 D identified by similarity to SP:P39302; match to protein family HMM PF02302; PTS system, ascorbate-specific IIB component SgaB 776646..776936 Clostridium perfringens ATCC 13124 4203658 YP_695100.1 CDS CPF_0647 NC_008261.1 777044 778078 D identified by similarity to GB:AAN00670.1; match to protein family HMM PF01839; hypothetical protein 777044..778078 Clostridium perfringens ATCC 13124 4201869 YP_695101.1 CDS araD NC_008261.1 778217 778915 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 778217..778915 Clostridium perfringens ATCC 13124 4203710 YP_695102.1 CDS CPF_0649 NC_008261.1 778934 779782 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 778934..779782 Clostridium perfringens ATCC 13124 4202323 YP_695103.1 CDS CPF_0650 NC_008261.1 779906 780706 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(779906..780706) Clostridium perfringens ATCC 13124 4202835 YP_695104.1 CDS CPF_0651 NC_008261.1 780813 780950 R hypothetical protein complement(780813..780950) Clostridium perfringens ATCC 13124 4201613 YP_695105.1 CDS CPF_0652 NC_008261.1 781031 782341 R F5/8 type C domain-containing protein complement(781031..782341) Clostridium perfringens ATCC 13124 4202913 YP_695106.1 CDS CPF_0653 NC_008261.1 782631 782957 R Selenoprotein; identified by match to protein family HMM TIGR01911; hesB family protein complement(782631..782957) Clostridium perfringens ATCC 13124 4203070 YP_695107.1 CDS CPF_0654 NC_008261.1 783059 783403 R identified by match to protein family HMM TIGR01911; hesB family protein complement(783059..783403) Clostridium perfringens ATCC 13124 4203292 YP_695108.1 CDS CPF_0655 NC_008261.1 783950 784492 D hypothetical protein 783950..784492 Clostridium perfringens ATCC 13124 4203463 YP_695109.1 CDS CPF_0656 NC_008261.1 785000 786013 D hypothetical protein 785000..786013 Clostridium perfringens ATCC 13124 4202362 YP_695110.1 CDS leuS NC_008261.1 786159 788609 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(786159..788609) Clostridium perfringens ATCC 13124 4203513 YP_695111.1 CDS CPF_0658 NC_008261.1 789049 789192 D identified by similarity to GB:BAC14641.1; hypothetical protein 789049..789192 Clostridium perfringens ATCC 13124 4202636 YP_695112.1 CDS CPF_0659 NC_008261.1 789376 789507 D hypothetical protein 789376..789507 Clostridium perfringens ATCC 13124 4203337 YP_695113.1 CDS CPF_0660 NC_008261.1 789542 789721 D hypothetical protein 789542..789721 Clostridium perfringens ATCC 13124 4202025 YP_695114.1 CDS CPF_0661 NC_008261.1 789763 791019 D identified by match to protein family HMM PF00654; voltage-gated chloride channel family protein 789763..791019 Clostridium perfringens ATCC 13124 4203259 YP_695115.1 CDS CPF_0662 NC_008261.1 791089 791655 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(791089..791655) Clostridium perfringens ATCC 13124 4203045 YP_695116.1 CDS CPF_0663 NC_008261.1 791947 792309 D hypothetical protein 791947..792309 Clostridium perfringens ATCC 13124 4203094 YP_695117.1 CDS birA NC_008261.1 792506 793492 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 792506..793492 Clostridium perfringens ATCC 13124 4202598 YP_695118.1 CDS CPF_0665 NC_008261.1 793649 794734 D identified by match to protein family HMM PF00570; HRDC domain-containing protein 793649..794734 Clostridium perfringens ATCC 13124 4202943 YP_695119.1 CDS CPF_0666 NC_008261.1 794736 794903 D hypothetical protein 794736..794903 Clostridium perfringens ATCC 13124 4202858 YP_695120.1 CDS CPF_0667 NC_008261.1 795004 795738 D hypothetical protein 795004..795738 Clostridium perfringens ATCC 13124 4201837 YP_695121.1 CDS CPF_0668 NC_008261.1 795928 796233 D hypothetical protein 795928..796233 Clostridium perfringens ATCC 13124 4202438 YP_695122.1 CDS dut NC_008261.1 796480 797130 D identified by match to protein family HMM PF00692; deoxyuridine 5-triphosphate nucleotidohydrolase 796480..797130 Clostridium perfringens ATCC 13124 4202052 YP_695123.1 CDS thiC NC_008261.1 797635 798945 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 797635..798945 Clostridium perfringens ATCC 13124 4201374 YP_695124.1 CDS CPF_0671 NC_008261.1 799183 802983 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 799183..802983 Clostridium perfringens ATCC 13124 4203511 YP_695125.1 CDS purE NC_008261.1 803294 803773 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 803294..803773 Clostridium perfringens ATCC 13124 4201107 YP_695126.1 CDS purC NC_008261.1 803773 804480 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 803773..804480 Clostridium perfringens ATCC 13124 4203660 YP_695127.1 CDS purF NC_008261.1 804526 805947 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 804526..805947 Clostridium perfringens ATCC 13124 4202518 YP_695128.1 CDS purM NC_008261.1 805948 806949 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 805948..806949 Clostridium perfringens ATCC 13124 4201607 YP_695129.1 CDS purN NC_008261.1 806937 807551 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 806937..807551 Clostridium perfringens ATCC 13124 4202699 YP_695130.1 CDS purH NC_008261.1 807564 809069 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 807564..809069 Clostridium perfringens ATCC 13124 4202650 YP_695131.1 CDS purD NC_008261.1 809185 810435 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 809185..810435 Clostridium perfringens ATCC 13124 4201635 YP_695132.1 CDS CPF_0680 NC_008261.1 811348 811710 D identified by similarity to GB:AAO82850.1; match to protein family HMM PF03733; hypothetical protein 811348..811710 Clostridium perfringens ATCC 13124 4203435 YP_695133.1 CDS CPF_0681 NC_008261.1 812243 812785 D identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 812243..812785 Clostridium perfringens ATCC 13124 4201017 YP_695134.1 CDS argH NC_008261.1 812918 814318 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(812918..814318) Clostridium perfringens ATCC 13124 4201776 YP_695135.1 CDS argG NC_008261.1 814412 815623 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(814412..815623) Clostridium perfringens ATCC 13124 4203178 YP_695136.1 CDS CPF_0684 NC_008261.1 816248 816895 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 816248..816895 Clostridium perfringens ATCC 13124 4202303 YP_695137.1 CDS CPF_0685 NC_008261.1 817295 822355 D identified by match to protein family HMM PF00041; match to protein family HMM PF02018; match to protein family HMM PF07532; fibronectin type III 817295..822355 Clostridium perfringens ATCC 13124 4202617 YP_695138.1 CDS CPF_0686 NC_008261.1 822530 822661 D hypothetical protein 822530..822661 Clostridium perfringens ATCC 13124 4203046 YP_695139.1 CDS aroF NC_008261.1 822827 823840 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 822827..823840 Clostridium perfringens ATCC 13124 4201459 YP_695140.1 CDS aroB NC_008261.1 823961 825013 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 823961..825013 Clostridium perfringens ATCC 13124 4201276 YP_695141.1 CDS aroA NC_008261.1 825206 826480 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 825206..826480 Clostridium perfringens ATCC 13124 4202833 YP_695142.1 CDS aroC NC_008261.1 826544 827617 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 826544..827617 Clostridium perfringens ATCC 13124 4203801 YP_695143.1 CDS CPF_0691 NC_008261.1 827786 828079 D identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; chorismate mutase 827786..828079 Clostridium perfringens ATCC 13124 4203323 YP_695144.1 CDS CPF_0692 NC_008261.1 828255 828347 D hypothetical protein 828255..828347 Clostridium perfringens ATCC 13124 4201812 YP_695145.1 CDS aroE NC_008261.1 828901 829716 D identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 828901..829716 Clostridium perfringens ATCC 13124 4203210 YP_695146.1 CDS aroK NC_008261.1 829970 830473 D identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 829970..830473 Clostridium perfringens ATCC 13124 4202373 YP_695147.1 CDS aroQ NC_008261.1 830540 830974 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 830540..830974 Clostridium perfringens ATCC 13124 4203324 YP_695148.1 CDS CPF_0696 NC_008261.1 830995 831336 R identified by match to protein family HMM PF01638; transcriptional regulator complement(830995..831336) Clostridium perfringens ATCC 13124 4202679 YP_695149.1 CDS CPF_0697 NC_008261.1 831592 832698 D identified by similarity to SP:P32382; match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 831592..832698 Clostridium perfringens ATCC 13124 4203909 YP_695150.1 CDS CPF_0698 NC_008261.1 833435 833950 D hypothetical protein 833435..833950 Clostridium perfringens ATCC 13124 4202811 YP_695151.1 CDS CPF_0699 NC_008261.1 834077 834409 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 834077..834409 Clostridium perfringens ATCC 13124 4203144 YP_695152.1 CDS CPF_0700 NC_008261.1 834411 835268 D identified by similarity to GB:BAB80411.1; hypothetical protein 834411..835268 Clostridium perfringens ATCC 13124 4203610 YP_695153.1 CDS CPF_0701 NC_008261.1 835480 835974 D hypothetical protein 835480..835974 Clostridium perfringens ATCC 13124 4202437 YP_695154.1 CDS CPF_0702 NC_008261.1 836142 836321 D hypothetical protein 836142..836321 Clostridium perfringens ATCC 13124 4202188 YP_695155.1 CDS CPF_0703 NC_008261.1 836447 837337 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 836447..837337 Clostridium perfringens ATCC 13124 4203757 YP_695156.1 CDS CPF_0704 NC_008261.1 837339 838550 D identified by similarity to GB:CAD65063.1; hypothetical protein 837339..838550 Clostridium perfringens ATCC 13124 4202260 YP_695157.1 CDS CPF_0705 NC_008261.1 838665 839654 D identified by similarity to SP:P54965; match to protein family HMM PF02275; choloylglycine hydrolase 838665..839654 Clostridium perfringens ATCC 13124 4202530 YP_695158.1 CDS CPF_0706 NC_008261.1 840440 840922 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 840440..840922 Clostridium perfringens ATCC 13124 4203464 YP_695159.1 CDS CPF_0707 NC_008261.1 840919 842097 D identified by match to protein family HMM PF00155; match to protein family HMM PF00266; match to protein family HMM PF01212; aspartate aminotransferase 840919..842097 Clostridium perfringens ATCC 13124 4203402 YP_695160.1 CDS CPF_0708 NC_008261.1 842212 843237 D hypothetical protein 842212..843237 Clostridium perfringens ATCC 13124 4203240 YP_695161.1 CDS CPF_0709 NC_008261.1 843294 843767 R hypothetical protein complement(843294..843767) Clostridium perfringens ATCC 13124 4202540 YP_695162.1 CDS CPF_0710 NC_008261.1 843817 844959 R identified by match to protein family HMM PF06925; monogalactosyldiacylglycerol synthase complement(843817..844959) Clostridium perfringens ATCC 13124 4202749 YP_695163.1 CDS CPF_0711 NC_008261.1 845450 845953 D identified by match to protein family HMM PF00583; acetyltransferase 845450..845953 Clostridium perfringens ATCC 13124 4201749 YP_695164.1 CDS CPF_0712 NC_008261.1 846213 846692 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 846213..846692 Clostridium perfringens ATCC 13124 4202934 YP_695165.1 CDS CPF_0713 NC_008261.1 846769 848181 D identified by similarity to GB:AAO36314.1; hypothetical protein 846769..848181 Clostridium perfringens ATCC 13124 4202996 YP_695166.1 CDS CPF_0714 NC_008261.1 848402 849604 D identified by match to protein family HMM PF02272; match to protein family HMM PF07973; DHH domain-containing protein 848402..849604 Clostridium perfringens ATCC 13124 4201053 YP_695167.1 CDS CPF_0715 NC_008261.1 849659 850663 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 849659..850663 Clostridium perfringens ATCC 13124 4202900 YP_695168.1 CDS CPF_0716 NC_008261.1 850890 851990 D identified by match to protein family HMM PF01594; hypothetical protein 850890..851990 Clostridium perfringens ATCC 13124 4202863 YP_695169.1 CDS CPF_0717 NC_008261.1 852189 853028 D identified by match to protein family HMM PF02535; zinc transporter ZupT 852189..853028 Clostridium perfringens ATCC 13124 4203339 YP_695170.2 CDS CPF_0718 NC_008261.1 853216 853980 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 853216..853980 Clostridium perfringens ATCC 13124 4201317 YP_695171.1 CDS CPF_0719 NC_008261.1 854099 854887 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 854099..854887 Clostridium perfringens ATCC 13124 4201048 YP_695172.1 CDS splB NC_008261.1 855091 856113 D identified by similarity to SP:P37956; match to protein family HMM PF04055; match to protein family HMM TIGR00620; spore photoproduct lyase 855091..856113 Clostridium perfringens ATCC 13124 4201021 YP_695173.1 CDS CPF_0721 NC_008261.1 856777 858861 D identified by similarity to SP:Q54727; match to protein family HMM PF02012; match to protein family HMM PF02973; exo-alpha-sialidase 856777..858861 Clostridium perfringens ATCC 13124 4202671 YP_695174.1 CDS CPF_0722 NC_008261.1 858909 860063 D lipoprotein 858909..860063 Clostridium perfringens ATCC 13124 4201883 YP_695175.1 CDS CPF_0723 NC_008261.1 860407 861234 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase 860407..861234 Clostridium perfringens ATCC 13124 4203715 YP_695176.1 CDS CPF_0724 NC_008261.1 861338 861802 D identified by match to protein family HMM PF00583; acetyltransferase 861338..861802 Clostridium perfringens ATCC 13124 4202389 YP_695177.1 CDS CPF_0725 NC_008261.1 862176 862352 D hypothetical protein 862176..862352 Clostridium perfringens ATCC 13124 4203236 YP_695178.1 CDS CPF_0726 NC_008261.1 862480 863163 D identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290; hypothetical protein 862480..863163 Clostridium perfringens ATCC 13124 4203368 YP_695179.1 CDS CPF_0727 NC_008261.1 863377 864273 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(863377..864273) Clostridium perfringens ATCC 13124 4201091 YP_695180.1 CDS CPF_0728 NC_008261.1 864623 866323 D identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 864623..866323 Clostridium perfringens ATCC 13124 4201324 YP_695181.1 CDS CPF_0729 NC_008261.1 866429 867715 D identified by match to protein family HMM PF04143; hypothetical protein 866429..867715 Clostridium perfringens ATCC 13124 4202632 YP_695182.1 CDS CPF_0730 NC_008261.1 867804 869114 D identified by match to protein family HMM PF00324; amino acid permease 867804..869114 Clostridium perfringens ATCC 13124 4202853 YP_695183.1 CDS CPF_0731 NC_008261.1 869254 870372 D identified by match to protein family HMM PF00480; ROK family protein 869254..870372 Clostridium perfringens ATCC 13124 4202168 YP_695184.1 CDS CPF_0732 NC_008261.1 870578 871624 D identified by similarity to SP:Q06004; match to protein family HMM PF00107; L-iditol 2-dehydrogenase 870578..871624 Clostridium perfringens ATCC 13124 4200983 YP_695185.1 CDS CPF_0733 NC_008261.1 871747 873144 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sodium:glactoside symporter family protein 871747..873144 Clostridium perfringens ATCC 13124 4201157 YP_695186.1 CDS scrK NC_008261.1 873165 874097 D identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294; fructokinase 873165..874097 Clostridium perfringens ATCC 13124 4202935 YP_695187.1 CDS CPF_0735 NC_008261.1 874183 874845 R identified by similarity to GB:CAC69846.1; match to protein family HMM PF07299; fibronectin-binding protein complement(874183..874845) Clostridium perfringens ATCC 13124 4202910 YP_695188.1 CDS trx NC_008261.1 875747 876061 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 875747..876061 Clostridium perfringens ATCC 13124 4202047 YP_695189.1 CDS CPF_0738 NC_008261.1 876369 876701 D identified by match to protein family HMM PF01638; transcriptional regulator 876369..876701 Clostridium perfringens ATCC 13124 4201579 YP_695190.1 CDS CPF_0739 NC_008261.1 876727 877938 D identified by match to protein family HMM PF00085; match to protein family HMM PF02683; cytochrome C-type biogenesis protein 876727..877938 Clostridium perfringens ATCC 13124 4202678 YP_695191.1 CDS CPF_0740 NC_008261.1 878464 880185 D identified by match to protein family HMM PF07859; alpha/beta hydrolase 878464..880185 Clostridium perfringens ATCC 13124 4201660 YP_695192.1 CDS cstA NC_008261.1 880647 882098 D identified by match to protein family HMM PF02554; carbon starvation protein CstA 880647..882098 Clostridium perfringens ATCC 13124 4201193 YP_695193.1 CDS CPF_0742 NC_008261.1 882229 882648 D hypothetical protein 882229..882648 Clostridium perfringens ATCC 13124 4202125 YP_695194.1 CDS CPF_0743 NC_008261.1 882852 883154 D hypothetical protein 882852..883154 Clostridium perfringens ATCC 13124 4203763 YP_695195.1 CDS CPF_0744 NC_008261.1 883242 883796 R identified by similarity to GB:BAC12302.1; hypothetical protein complement(883242..883796) Clostridium perfringens ATCC 13124 4201924 YP_695196.1 CDS CPF_0745 NC_008261.1 884193 884894 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 884193..884894 Clostridium perfringens ATCC 13124 4201707 YP_695197.1 CDS CPF_0746 NC_008261.1 884911 888309 D identified by match to protein family HMM PF02687; ABC transporter permease 884911..888309 Clostridium perfringens ATCC 13124 4202281 YP_695198.1 CDS CPF_0747 NC_008261.1 888715 889053 D identified by similarity to PIR:F86818; hypothetical protein 888715..889053 Clostridium perfringens ATCC 13124 4202489 YP_695199.1 CDS cls NC_008261.1 889155 890606 R identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase complement(889155..890606) Clostridium perfringens ATCC 13124 4202226 YP_695200.1 CDS CPF_0749 NC_008261.1 891054 891548 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 891054..891548 Clostridium perfringens ATCC 13124 4203882 YP_695201.1 CDS codA NC_008261.1 891712 892974 R identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969; cytosine deaminase complement(891712..892974) Clostridium perfringens ATCC 13124 4201216 YP_695202.1 CDS CPF_0751 NC_008261.1 893422 894177 D identified by similarity to GB:BAA25929.1; match to protein family HMM PF02633; creatininase 893422..894177 Clostridium perfringens ATCC 13124 4202864 YP_695203.1 CDS CPF_0752 NC_008261.1 894226 895152 D identified by match to protein family HMM PF00892; hypothetical protein 894226..895152 Clostridium perfringens ATCC 13124 4203358 YP_695204.1 CDS CPF_0753 NC_008261.1 895279 896478 R identified by similarity to GB:AAS19481.1; match to protein family HMM PF07905; hypothetical protein complement(895279..896478) Clostridium perfringens ATCC 13124 4201127 YP_695205.1 CDS def NC_008261.1 896667 897077 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 896667..897077 Clostridium perfringens ATCC 13124 4202733 YP_695206.1 CDS CPF_0755 NC_008261.1 897168 897392 R hypothetical protein complement(897168..897392) Clostridium perfringens ATCC 13124 4203869 YP_695207.1 CDS CPF_0756 NC_008261.1 897410 898675 R identified by similarity to SP:P24943; match to protein family HMM PF00375; proton/sodium-glutamate symport protein complement(897410..898675) Clostridium perfringens ATCC 13124 4203491 YP_695208.1 CDS CPF_0757 NC_008261.1 899251 899943 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD family hydrolase complement(899251..899943) Clostridium perfringens ATCC 13124 4201479 YP_695209.1 CDS CPF_0758 NC_008261.1 900169 901122 D hypothetical protein 900169..901122 Clostridium perfringens ATCC 13124 4202240 YP_695210.1 CDS CPF_0759 NC_008261.1 901357 901986 R identified by match to protein family HMM PF00583; acetyltransferase complement(901357..901986) Clostridium perfringens ATCC 13124 4202404 YP_695211.1 CDS CPF_0760 NC_008261.1 902138 902941 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 902138..902941 Clostridium perfringens ATCC 13124 4202987 YP_695212.1 CDS CPF_0761 NC_008261.1 903078 904433 R identified by similarity to PIR:F96989; hypothetical protein complement(903078..904433) Clostridium perfringens ATCC 13124 4202081 YP_695213.1 CDS CPF_0762 NC_008261.1 904740 904895 D identified by similarity to PIR:A96978; hypothetical protein 904740..904895 Clostridium perfringens ATCC 13124 4201012 YP_695214.1 CDS CPF_0763 NC_008261.1 904953 905447 R identified by similarity to SP:P37501; hypothetical protein complement(904953..905447) Clostridium perfringens ATCC 13124 4202889 YP_695215.1 CDS CPF_0764 NC_008261.1 905799 907163 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein 905799..907163 Clostridium perfringens ATCC 13124 4202320 YP_695216.1 CDS CPF_0765 NC_008261.1 907386 908225 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator complement(907386..908225) Clostridium perfringens ATCC 13124 4202620 YP_695217.1 CDS CPF_0766 NC_008261.1 908589 911627 D identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; beta-galactosidase 908589..911627 Clostridium perfringens ATCC 13124 4202276 YP_695218.1 CDS CPF_0767 NC_008261.1 912042 913481 D identified by match to protein family HMM PF00355; match to protein family HMM PF01266; Rieske family iron-sulfur cluster-binding protein 912042..913481 Clostridium perfringens ATCC 13124 4202651 YP_695219.1 CDS CPF_0768 NC_008261.1 913833 915212 R identified by match to protein family HMM PF03600; hypothetical protein complement(913833..915212) Clostridium perfringens ATCC 13124 4200987 YP_695220.1 CDS CPF_0769 NC_008261.1 915626 916405 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 915626..916405 Clostridium perfringens ATCC 13124 4201084 YP_695221.1 CDS aspC NC_008261.1 916586 917875 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 916586..917875 Clostridium perfringens ATCC 13124 4202455 YP_695222.1 CDS CPF_0771 NC_008261.1 918285 919934 D identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; cell wall surface anchor family protein 918285..919934 Clostridium perfringens ATCC 13124 4203743 YP_695223.1 CDS CPF_0772 NC_008261.1 920024 920863 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 920024..920863 Clostridium perfringens ATCC 13124 4201298 YP_695224.1 CDS CPF_0773 NC_008261.1 920872 921732 D identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 920872..921732 Clostridium perfringens ATCC 13124 4203103 YP_695225.1 CDS CPF_0774 NC_008261.1 921885 924671 D identified by match to protein family HMM PF00092; match to protein family HMM PF05738; von Willebrand factor A 921885..924671 Clostridium perfringens ATCC 13124 4202500 YP_695226.1 CDS CPF_0775 NC_008261.1 924969 926426 D identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043; hypothetical protein 924969..926426 Clostridium perfringens ATCC 13124 4201175 YP_695227.1 CDS CPF_0776 NC_008261.1 926776 927588 D identified by similarity to GB:AAO36389.1; match to protein family HMM PF01814; match to protein family HMM PF04282; hypothetical protein 926776..927588 Clostridium perfringens ATCC 13124 4201147 YP_695228.1 CDS CPF_0777 NC_008261.1 927631 928329 D identified by similarity to GB:AAB81287.1; match to protein family HMM PF01814; match to protein family HMM PF04405; scdA protein 927631..928329 Clostridium perfringens ATCC 13124 4202560 YP_695229.1 CDS CPF_0778 NC_008261.1 928482 929192 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 928482..929192 Clostridium perfringens ATCC 13124 4203518 YP_695230.1 CDS CPF_0779 NC_008261.1 929445 929606 R identified by match to protein family HMM PF00301; rubredoxin complement(929445..929606) Clostridium perfringens ATCC 13124 4202192 YP_695231.1 CDS CPF_0780 NC_008261.1 930188 930934 D identified by match to protein family HMM PF00175; match to protein family HMM PF00970; oxidoreductase, FAD-binding 930188..930934 Clostridium perfringens ATCC 13124 4203011 YP_695232.1 CDS CPF_0781 NC_008261.1 931153 931863 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 931153..931863 Clostridium perfringens ATCC 13124 4203086 YP_695233.1 CDS CPF_0782 NC_008261.1 931918 932079 R identified by similarity to SP:P00268; match to protein family HMM PF00301; rubredoxin complement(931918..932079) Clostridium perfringens ATCC 13124 4201335 YP_695234.1 CDS CPF_0783 NC_008261.1 932106 933326 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(932106..933326) Clostridium perfringens ATCC 13124 4203775 YP_695235.1 CDS ahpC NC_008261.1 933542 934105 D identified by similarity to GB:AAD52147.1; match to protein family HMM PF00578; alkyl hydroperoxide reductase 933542..934105 Clostridium perfringens ATCC 13124 4201800 YP_695236.1 CDS CPF_0785 NC_008261.1 934592 936262 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 934592..936262 Clostridium perfringens ATCC 13124 4203907 YP_695237.1 CDS CPF_0786 NC_008261.1 936459 936644 D hypothetical protein 936459..936644 Clostridium perfringens ATCC 13124 4201433 YP_695238.1 CDS CPF_0787 NC_008261.1 936752 937810 D hypothetical protein 936752..937810 Clostridium perfringens ATCC 13124 4203128 YP_695239.1 CDS panE NC_008261.1 937846 938775 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 937846..938775 Clostridium perfringens ATCC 13124 4201376 YP_695240.1 CDS CPF_0789 NC_008261.1 939036 939461 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 939036..939461 Clostridium perfringens ATCC 13124 4202059 YP_695241.1 CDS CPF_0790 NC_008261.1 939680 940183 D hypothetical protein 939680..940183 Clostridium perfringens ATCC 13124 4201901 YP_695242.1 CDS CPF_0791 NC_008261.1 940286 940729 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 940286..940729 Clostridium perfringens ATCC 13124 4202516 YP_695243.1 CDS CPF_0792 NC_008261.1 940814 941695 D identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin 940814..941695 Clostridium perfringens ATCC 13124 4201825 YP_695244.1 CDS CPF_0793 NC_008261.1 941729 942325 D identified by match to protein family HMM PF02525; flavodoxin family protein 941729..942325 Clostridium perfringens ATCC 13124 4200942 YP_695245.1 CDS CPF_0794 NC_008261.1 942572 943087 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 942572..943087 Clostridium perfringens ATCC 13124 4203875 YP_695246.1 CDS CPF_0795 NC_008261.1 943237 943818 R identified by match to protein family HMM PF01569; PAP2 family protein complement(943237..943818) Clostridium perfringens ATCC 13124 4203943 YP_695247.1 CDS CPF_0796 NC_008261.1 944042 944782 D identified by similarity to SP:P28671; hypothetical protein 944042..944782 Clostridium perfringens ATCC 13124 4202391 YP_695248.1 CDS CPF_0797 NC_008261.1 944953 946197 D identified by similarity to SP:Q56106; FliB family protein 944953..946197 Clostridium perfringens ATCC 13124 4201575 YP_695249.1 CDS CPF_0798 NC_008261.1 946332 946859 R identified by similarity to GB:AAS08237.1; hypothetical protein complement(946332..946859) Clostridium perfringens ATCC 13124 4202369 YP_695250.1 CDS CPF_0799 NC_008261.1 947377 947844 D hypothetical protein 947377..947844 Clostridium perfringens ATCC 13124 4201166 YP_695251.1 CDS CPF_0800 NC_008261.1 947972 948685 D identified by similarity to GB:AAT29428.1; match to protein family HMM PF01863; hypothetical protein 947972..948685 Clostridium perfringens ATCC 13124 4202737 YP_695252.1 CDS CPF_0801 NC_008261.1 948869 950743 D identified by similarity to SP:O34411; match to protein family HMM PF00990; match to protein family HMM PF02811; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR01856; sensory box protein/histidinol phosphate phosphatase 948869..950743 Clostridium perfringens ATCC 13124 4203050 YP_695253.1 CDS CPF_0802 NC_008261.1 951039 952871 D identified by match to protein family HMM PF00128; match to protein family HMM PF02903; glycosyl hydrolase 951039..952871 Clostridium perfringens ATCC 13124 4200952 YP_695254.1 CDS CPF_0803 NC_008261.1 953116 954399 D identified by similarity to GB:AAQ66048.1; match to protein family HMM PF06354; hypothetical protein 953116..954399 Clostridium perfringens ATCC 13124 4203927 YP_695255.1 CDS CPF_0804 NC_008261.1 954688 955191 R hypothetical protein complement(954688..955191) Clostridium perfringens ATCC 13124 4202036 YP_695256.1 CDS CPF_0805 NC_008261.1 955511 956056 D hypothetical protein 955511..956056 Clostridium perfringens ATCC 13124 4203320 YP_695257.1 CDS CPF_0806 NC_008261.1 956096 956716 R identified by similarity to GB:AAT61415.1; match to protein family HMM PF02698; hypothetical protein complement(956096..956716) Clostridium perfringens ATCC 13124 4202042 YP_695258.1 CDS CPF_0807 NC_008261.1 956980 957924 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 956980..957924 Clostridium perfringens ATCC 13124 4202847 YP_695259.1 CDS CPF_0808 NC_008261.1 958023 959036 D identified by similarity to SP:P49936; match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuB 958023..959036 Clostridium perfringens ATCC 13124 4203867 YP_695260.1 CDS CPF_0809 NC_008261.1 959040 960053 D identified by similarity to SP:P49937; match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuG 959040..960053 Clostridium perfringens ATCC 13124 4202652 YP_695261.1 CDS CPF_0810 NC_008261.1 960211 960993 D identified by similarity to SP:P49938; match to protein family HMM PF00005; ferrichrome ABC transporter ATP-binding protein 960211..960993 Clostridium perfringens ATCC 13124 4201471 YP_695262.1 CDS CPF_0811 NC_008261.1 961312 961800 D identified by match to protein family HMM PF00583; acetyltransferase 961312..961800 Clostridium perfringens ATCC 13124 4202166 YP_695263.1 CDS CPF_0812 NC_008261.1 961868 962083 D identified by similarity to GB:AAP11485.1; hypothetical protein 961868..962083 Clostridium perfringens ATCC 13124 4202451 YP_695264.1 CDS CPF_0813 NC_008261.1 962076 962393 D hypothetical protein 962076..962393 Clostridium perfringens ATCC 13124 4201282 YP_695265.1 CDS CPF_0814 NC_008261.1 962605 962931 R hypothetical protein complement(962605..962931) Clostridium perfringens ATCC 13124 4202820 YP_695266.1 CDS CPF_0815 NC_008261.1 963334 966717 D identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644; glycosyl hydrolase 963334..966717 Clostridium perfringens ATCC 13124 4202623 YP_695267.1 CDS ddl NC_008261.1 966918 967826 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 966918..967826 Clostridium perfringens ATCC 13124 4201158 YP_695268.1 CDS CPF_0817 NC_008261.1 967973 968800 D identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 967973..968800 Clostridium perfringens ATCC 13124 4203021 YP_695269.1 CDS CPF_0818 NC_008261.1 969127 970107 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; PTS system mannose/fructose/sorbose family transporter subunit IIB 969127..970107 Clostridium perfringens ATCC 13124 4203580 YP_695270.1 CDS CPF_0819 NC_008261.1 970158 970961 D identified by match to protein family HMM PF03609; PTS system mannose/fructose/sorbose family transporter subunit IIC 970158..970961 Clostridium perfringens ATCC 13124 4202841 YP_695271.1 CDS CPF_0820 NC_008261.1 970981 971892 D identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system mannose/fructose/sorbose family transporter subunit IID 970981..971892 Clostridium perfringens ATCC 13124 4201580 YP_695272.1 CDS CPF_0821 NC_008261.1 972063 972437 D identified by similarity to GB:AAO79906.1; match to protein family HMM PF06115; hypothetical protein 972063..972437 Clostridium perfringens ATCC 13124 4201945 YP_695273.1 CDS CPF_0822 NC_008261.1 972821 973168 D hypothetical protein 972821..973168 Clostridium perfringens ATCC 13124 4202939 YP_695274.1 CDS CPF_0823 NC_008261.1 973394 974311 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 973394..974311 Clostridium perfringens ATCC 13124 4202453 YP_695275.1 CDS CPF_0824 NC_008261.1 974770 975552 D identified by match to protein family HMM TIGR02206; hypothetical protein 974770..975552 Clostridium perfringens ATCC 13124 4202624 YP_695276.1 CDS CPF_0825 NC_008261.1 975809 976750 D hypothetical protein 975809..976750 Clostridium perfringens ATCC 13124 4203233 YP_695277.1 CDS CPF_0826 NC_008261.1 977025 979439 D identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; glycosyl hydrolase 977025..979439 Clostridium perfringens ATCC 13124 4202082 YP_695278.1 CDS CPF_0827 NC_008261.1 980233 981186 D identified by similarity to GB:BAB80538.1; match to protein family HMM PF00188; hypothetical protein 980233..981186 Clostridium perfringens ATCC 13124 4203942 YP_695279.1 CDS CPF_0828 NC_008261.1 981315 981461 D hypothetical protein 981315..981461 Clostridium perfringens ATCC 13124 4203844 YP_695280.1 CDS CPF_0829 NC_008261.1 981513 983324 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 981513..983324 Clostridium perfringens ATCC 13124 4202293 YP_695281.1 CDS CPF_0830 NC_008261.1 983324 985114 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 983324..985114 Clostridium perfringens ATCC 13124 4203429 YP_695282.1 CDS CPF_0831 NC_008261.1 985331 985828 D identified by similarity to GB:AAP25046.1; match to protein family HMM PF03703; hypothetical protein 985331..985828 Clostridium perfringens ATCC 13124 4201201 YP_695283.1 CDS CPF_0832 NC_008261.1 985837 987465 D identified by match to protein family HMM PF03703; hypothetical protein 985837..987465 Clostridium perfringens ATCC 13124 4203719 YP_695284.1 CDS arsR NC_008261.1 987834 988118 D identified by similarity to SP:P30338; match to protein family HMM PF01022; arsenical resistance operon repressor 987834..988118 Clostridium perfringens ATCC 13124 4203586 YP_695285.1 CDS arsC NC_008261.1 988237 988635 D identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 988237..988635 Clostridium perfringens ATCC 13124 4200955 YP_695286.1 CDS CPF_0835 NC_008261.1 988652 989968 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 988652..989968 Clostridium perfringens ATCC 13124 4201378 YP_695287.1 CDS CPF_0836 NC_008261.1 990160 990828 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 990160..990828 Clostridium perfringens ATCC 13124 4201153 YP_695288.1 CDS CPF_0837 NC_008261.1 990825 991835 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 990825..991835 Clostridium perfringens ATCC 13124 4201345 YP_695289.1 CDS CPF_0838 NC_008261.1 992119 992829 D identified by match to protein family HMM PF02661; Fic family protein 992119..992829 Clostridium perfringens ATCC 13124 4203605 YP_695290.1 CDS CPF_0839 NC_008261.1 992804 993088 D identified by similarity to GB:CAE82085.1; hypothetical protein 992804..993088 Clostridium perfringens ATCC 13124 4202152 YP_695291.1 CDS cloSI NC_008261.1 993403 994971 D identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806; alpha-clostripain 993403..994971 Clostridium perfringens ATCC 13124 4201384 YP_695292.1 CDS CPF_0841 NC_008261.1 995242 996009 D identified by similarity to SP:O34697; match to protein family HMM PF00005; ABC transporter ATP-binding protein 995242..996009 Clostridium perfringens ATCC 13124 4201564 YP_695293.1 CDS CPF_0843 NC_008261.1 998325 999833 D identified by match to protein family HMM PF01055; glycosyl hydrolase 998325..999833 Clostridium perfringens ATCC 13124 4203606 YP_695294.1 CDS CPF_0844 NC_008261.1 1000085 1000387 R identified by match to protein family HMM PF07876; stress responsive alpha-beta barrel domain-containing protein complement(1000085..1000387) Clostridium perfringens ATCC 13124 4201769 YP_695295.1 CDS CPF_0845 NC_008261.1 1000650 1001792 D identified by match to protein family HMM PF00266; class V aminotransferase 1000650..1001792 Clostridium perfringens ATCC 13124 4203278 YP_695296.1 CDS CPF_0846 NC_008261.1 1001957 1002874 D hypothetical protein 1001957..1002874 Clostridium perfringens ATCC 13124 4203571 YP_695297.1 CDS rbr NC_008261.1 1003079 1003618 D identified by match to protein family HMM PF02915; rubrerythrin 1003079..1003618 Clostridium perfringens ATCC 13124 4203730 YP_695298.1 CDS CPF_0848 NC_008261.1 1004144 1007212 D identified by match to protein family HMM PF01074; match to protein family HMM PF07748; glycosyl hydrolase 1004144..1007212 Clostridium perfringens ATCC 13124 4203308 YP_695299.1 CDS CPF_0849 NC_008261.1 1007469 1008035 R identified by match to protein family HMM PF00583; acetyltransferase complement(1007469..1008035) Clostridium perfringens ATCC 13124 4202765 YP_695300.1 CDS CPF_0850 NC_008261.1 1008266 1009438 D identified by similarity to SP:Q04944; match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1008266..1009438 Clostridium perfringens ATCC 13124 4202334 YP_695301.1 CDS CPF_0851 NC_008261.1 1009752 1010813 D identified by similarity to SP:P37047; match to protein family HMM PF05651; carbohydrate diacid regulator 1009752..1010813 Clostridium perfringens ATCC 13124 4202238 YP_695302.1 CDS CPF_0852 NC_008261.1 1010854 1011024 R hypothetical protein complement(1010854..1011024) Clostridium perfringens ATCC 13124 4203140 YP_695303.1 CDS CPF_0853 NC_008261.1 1010960 1012219 D identified by match to protein family HMM PF02447; match to protein family HMM PF03600; permease 1010960..1012219 Clostridium perfringens ATCC 13124 4202271 YP_695304.1 CDS glxK NC_008261.1 1012443 1013564 D identified by similarity to SP:Q9Z9P2; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1012443..1013564 Clostridium perfringens ATCC 13124 4202465 YP_695305.1 CDS deaD NC_008261.1 1014223 1015659 D identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase DeaD 1014223..1015659 Clostridium perfringens ATCC 13124 4203385 YP_695306.1 CDS CPF_0856 NC_008261.1 1015814 1016272 D hypothetical protein 1015814..1016272 Clostridium perfringens ATCC 13124 4202198 YP_695307.1 CDS CPF_0857 NC_008261.1 1016461 1017837 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1016461..1017837 Clostridium perfringens ATCC 13124 4201318 YP_695308.1 CDS CPF_0858 NC_008261.1 1017944 1018117 D identified by similarity to PIR:E97182; hypothetical protein 1017944..1018117 Clostridium perfringens ATCC 13124 4201783 YP_695309.1 CDS CPF_0859 NC_008261.1 1018485 1024772 D identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554; alpha-N-acetylglucosaminidase 1018485..1024772 Clostridium perfringens ATCC 13124 4203371 YP_695310.1 CDS CPF_0860 NC_008261.1 1025033 1025212 D hypothetical protein 1025033..1025212 Clostridium perfringens ATCC 13124 4202878 YP_695311.1 CDS alr NC_008261.1 1025324 1026484 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1025324..1026484) Clostridium perfringens ATCC 13124 4202182 YP_695312.1 CDS CPF_0862 NC_008261.1 1027032 1027601 D identified by match to protein family HMM PF00583; acetyltransferase 1027032..1027601 Clostridium perfringens ATCC 13124 4203894 YP_695313.1 CDS CPF_0863 NC_008261.1 1027653 1028915 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(1027653..1028915) Clostridium perfringens ATCC 13124 4201435 YP_695314.1 CDS CPF_0864 NC_008261.1 1028918 1029040 R hypothetical protein complement(1028918..1029040) Clostridium perfringens ATCC 13124 4202220 YP_695315.1 CDS CPF_0865 NC_008261.1 1029042 1029605 R identified by similarity to GB:AAB63267.1; match to protein family HMM PF04647; AgrB family protein complement(1029042..1029605) Clostridium perfringens ATCC 13124 4203596 YP_695316.1 CDS CPF_0866 NC_008261.1 1029967 1031742 D identified by match to protein family HMM PF00557; M24 family metallopeptidase 1029967..1031742 Clostridium perfringens ATCC 13124 4202019 YP_695317.1 CDS CPF_0867 NC_008261.1 1031981 1032124 D hypothetical protein 1031981..1032124 Clostridium perfringens ATCC 13124 4202208 YP_695318.1 CDS CPF_0868 NC_008261.1 1032227 1033354 D identified by similarity to SP:P39762; match to protein family HMM PF02073; metalloprotease 1032227..1033354 Clostridium perfringens ATCC 13124 4203588 YP_695319.1 CDS CPF_0869 NC_008261.1 1033458 1033901 D identified by match to protein family HMM PF00583; acetyltransferase 1033458..1033901 Clostridium perfringens ATCC 13124 4202641 YP_695320.1 CDS CPF_0870 NC_008261.1 1034084 1034749 R identified by match to protein family HMM PF02588; hypothetical protein complement(1034084..1034749) Clostridium perfringens ATCC 13124 4202026 YP_695321.1 CDS CPF_0871 NC_008261.1 1034911 1036083 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB complement(1034911..1036083) Clostridium perfringens ATCC 13124 4201770 YP_695322.1 CDS CPF_0873 NC_008261.1 1036945 1037487 D identified by match to protein family HMM PF00583; acetyltransferase 1036945..1037487 Clostridium perfringens ATCC 13124 4202083 YP_695323.1 CDS CPF_0874 NC_008261.1 1037743 1038498 R identified by match to protein family HMM PF06691; hypothetical protein complement(1037743..1038498) Clostridium perfringens ATCC 13124 4203087 YP_695324.1 CDS CPF_0875 NC_008261.1 1038706 1042596 D identified by similarity to SP:P26831; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167; hyaluronoglucosaminidase 1038706..1042596 Clostridium perfringens ATCC 13124 4203870 YP_695325.1 CDS CPF_0876 NC_008261.1 1042917 1043237 R identified by similarity to GB:AAD35845.1; match to protein family HMM PF01906; hypothetical protein complement(1042917..1043237) Clostridium perfringens ATCC 13124 4202140 YP_695326.1 CDS CPF_0877 NC_008261.1 1043676 1043864 D hypothetical protein 1043676..1043864 Clostridium perfringens ATCC 13124 4201327 YP_695327.1 CDS CPF_0878 NC_008261.1 1043933 1044733 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1043933..1044733 Clostridium perfringens ATCC 13124 4203856 YP_695328.1 CDS CPF_0879 NC_008261.1 1044730 1046379 D identified by similarity to GB:BAC24303.1; ABC transporter permease 1044730..1046379 Clostridium perfringens ATCC 13124 4201788 YP_695329.1 CDS CPF_0880 NC_008261.1 1046533 1047318 R identified by match to protein family HMM PF01476; LysM domain-containing protein complement(1046533..1047318) Clostridium perfringens ATCC 13124 4203261 YP_695330.1 CDS CPF_0881 NC_008261.1 1047643 1048194 R identified by similarity to PIR:F70426; hypothetical protein complement(1047643..1048194) Clostridium perfringens ATCC 13124 4203952 YP_695331.1 CDS CPF_0882 NC_008261.1 1048515 1049165 D identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1048515..1049165 Clostridium perfringens ATCC 13124 4201217 YP_695332.1 CDS CPF_0883 NC_008261.1 1049256 1049675 D identified by similarity to GB:AAP10150.1; hypothetical protein 1049256..1049675 Clostridium perfringens ATCC 13124 4201213 YP_695333.1 CDS CPF_0884 NC_008261.1 1050043 1050669 D DedA family protein 1050043..1050669 Clostridium perfringens ATCC 13124 4203724 YP_695334.1 CDS CPF_0885 NC_008261.1 1050937 1052067 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 1050937..1052067 Clostridium perfringens ATCC 13124 4201489 YP_695335.1 CDS eutS NC_008261.1 1052421 1052771 D identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS 1052421..1052771 Clostridium perfringens ATCC 13124 4203328 YP_695336.1 CDS eutP NC_008261.1 1052775 1053209 D identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 1052775..1053209 Clostridium perfringens ATCC 13124 4203819 YP_695337.1 CDS CPF_0888 NC_008261.1 1053227 1053802 D identified by match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator 1053227..1053802 Clostridium perfringens ATCC 13124 4201426 YP_695338.1 CDS CPF_0889 NC_008261.1 1053806 1055233 D identified by match to protein family HMM PF02518; match to protein family HMM PF07568; sensor histidine kinase 1053806..1055233 Clostridium perfringens ATCC 13124 4202654 YP_695339.1 CDS eutA NC_008261.1 1055449 1056882 D ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 1055449..1056882 Clostridium perfringens ATCC 13124 4202691 YP_695340.1 CDS CPF_0891 NC_008261.1 1056901 1058268 D identified by similarity to SP:P19635; match to protein family HMM PF06751; ethanolamine ammonia-lyase, large subunit 1056901..1058268 Clostridium perfringens ATCC 13124 4203023 YP_695341.1 CDS CPF_0892 NC_008261.1 1058285 1059172 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1058285..1059172 Clostridium perfringens ATCC 13124 4202813 YP_695342.1 CDS eutL NC_008261.1 1059194 1059847 D identified by similarity to SP:Q9ZFU9; match to protein family HMM PF00936; ethanolamine utilization protein EutL 1059194..1059847 Clostridium perfringens ATCC 13124 4201007 YP_695343.1 CDS CPF_0894 NC_008261.1 1059860 1060624 D identified by similarity to GB:AAL94295.1; match to protein family HMM PF00936; ethanolamine utilization protein 1059860..1060624 Clostridium perfringens ATCC 13124 4203778 YP_695344.1 CDS CPF_0895 NC_008261.1 1060624 1062102 D identified by similarity to GB:AAO36662.1; match to protein family HMM PF00171; match to protein family HMM TIGR02518; ethanolamine utilization protein 1060624..1062102 Clostridium perfringens ATCC 13124 4203908 YP_695345.1 CDS eutM NC_008261.1 1062457 1062747 D identified by similarity to SP:P41791; match to protein family HMM PF00936; ethanolamine utilization protein EutM 1062457..1062747 Clostridium perfringens ATCC 13124 4202974 YP_695346.1 CDS eutT NC_008261.1 1062825 1063601 D identified by similarity to GB:AAL21361.1; match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase 1062825..1063601 Clostridium perfringens ATCC 13124 4201246 YP_695347.1 CDS CPF_0898 NC_008261.1 1063611 1064246 D identified by match to protein family HMM PF06130; ethanolamine utilization protein 1063611..1064246 Clostridium perfringens ATCC 13124 4201499 YP_695348.1 CDS CPF_0899 NC_008261.1 1064475 1065212 D identified by similarity to GB:AAO36658.1; match to protein family HMM TIGR02536; ethanolamine utilization protein 1064475..1065212 Clostridium perfringens ATCC 13124 4202798 YP_695349.1 CDS CPF_0900 NC_008261.1 1065359 1065631 D identified by similarity to SP:P41792; match to protein family HMM PF03319; ethanolamine utilization protein EutN 1065359..1065631 Clostridium perfringens ATCC 13124 4202262 YP_695350.1 CDS CPF_0901 NC_008261.1 1065633 1066187 D identified by similarity to GB:AAO36657.1; match to protein family HMM PF00936; match to protein family HMM TIGR02526; ethanolamine utilization protein 1065633..1066187 Clostridium perfringens ATCC 13124 4201941 YP_695351.1 CDS CPF_0902 NC_008261.1 1066238 1067335 D identified by similarity to SP:P41796; match to protein family HMM PF04346; ethanolamine utilization protein EutH 1066238..1067335 Clostridium perfringens ATCC 13124 4201472 YP_695352.1 CDS CPF_0903 NC_008261.1 1067338 1067811 D identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ 1067338..1067811 Clostridium perfringens ATCC 13124 4201330 YP_695353.1 CDS CPF_0904 NC_008261.1 1068180 1068656 D identified by match to protein family HMM PF00255; glutathione peroxidase 1068180..1068656 Clostridium perfringens ATCC 13124 4203667 YP_695354.1 CDS CPF_0905 NC_008261.1 1069088 1069633 D identified by match to protein family HMM PF00583; acetyltransferase 1069088..1069633 Clostridium perfringens ATCC 13124 4203672 YP_695355.1 CDS CPF_0906 NC_008261.1 1069925 1070236 D identified by similarity to GB:AAK80174.1; hypothetical protein 1069925..1070236 Clostridium perfringens ATCC 13124 4202673 YP_695356.1 CDS CPF_0907 NC_008261.1 1070325 1070456 D hypothetical protein 1070325..1070456 Clostridium perfringens ATCC 13124 4202867 YP_695357.1 CDS CPF_0908 NC_008261.1 1070550 1072190 D identified by match to protein family HMM PF00563; diguanylate phosphodiesterase 1070550..1072190 Clostridium perfringens ATCC 13124 4203357 YP_695358.1 CDS CPF_0909 NC_008261.1 1072272 1072892 D identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1072272..1072892 Clostridium perfringens ATCC 13124 4203661 YP_695359.1 CDS CPF_0910 NC_008261.1 1073139 1074983 D identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein 1073139..1074983 Clostridium perfringens ATCC 13124 4202911 YP_695360.1 CDS CPF_0911 NC_008261.1 1075096 1076289 D identified by similarity to GB:AAD45657.1; match to protein family HMM PF01041; aminotransferase 1075096..1076289 Clostridium perfringens ATCC 13124 4201306 YP_695361.1 CDS CPF_0912 NC_008261.1 1076295 1076897 D identified by similarity to GB:AAG17415.1; match to protein family HMM PF02397; sugar transferase 1076295..1076897 Clostridium perfringens ATCC 13124 4202537 YP_695362.1 CDS CPF_0913 NC_008261.1 1076920 1077945 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1076920..1077945 Clostridium perfringens ATCC 13124 4203578 YP_695363.1 CDS CPF_0914 NC_008261.1 1077932 1079059 D identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein 1077932..1079059 Clostridium perfringens ATCC 13124 4202446 YP_695364.1 CDS CPF_0915 NC_008261.1 1079063 1080139 D identified by similarity to GB:AAM94575.1; polysaccharide polymerase 1079063..1080139 Clostridium perfringens ATCC 13124 4203862 YP_695365.1 CDS CPF_0916 NC_008261.1 1080176 1081549 D identified by similarity to GB:AAC78672.1; capsular polysaccharide transporter protein 1080176..1081549 Clostridium perfringens ATCC 13124 4203409 YP_695366.1 CDS CPF_0917 NC_008261.1 1081573 1082385 D identified by similarity to GB:AAD37094.1; match to protein family HMM PF04991; licD family protein 1081573..1082385 Clostridium perfringens ATCC 13124 4201823 YP_695367.1 CDS CPF_0918 NC_008261.1 1082401 1083114 D identified by match to protein family HMM PF02706; capsule chain length determinant protein 1082401..1083114 Clostridium perfringens ATCC 13124 4203132 YP_695368.1 CDS CPF_0919 NC_008261.1 1083114 1083731 D identified by similarity to SP:P39851; tyrosine-protein kinase 1083114..1083731 Clostridium perfringens ATCC 13124 4201224 YP_695369.1 CDS CPF_0920 NC_008261.1 1083893 1084318 D hypothetical protein 1083893..1084318 Clostridium perfringens ATCC 13124 4203768 YP_695370.1 CDS CPF_0921 NC_008261.1 1084498 1084986 D identified by similarity to GB:AAP08085.1; hypothetical protein 1084498..1084986 Clostridium perfringens ATCC 13124 4203786 YP_695371.1 CDS nrdD NC_008261.1 1085226 1087037 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1085226..1087037 Clostridium perfringens ATCC 13124 4200966 YP_695372.1 CDS CPF_0923 NC_008261.1 1087034 1087492 D identified by similarity to GB:BAB72688.1; hypothetical protein 1087034..1087492 Clostridium perfringens ATCC 13124 4201792 YP_695373.1 CDS CPF_0924 NC_008261.1 1087687 1088409 D hypothetical protein 1087687..1088409 Clostridium perfringens ATCC 13124 4203774 YP_695374.1 CDS CPF_0925 NC_008261.1 1088615 1088833 R identified by similarity to GB:AAS39698.1; hypothetical protein complement(1088615..1088833) Clostridium perfringens ATCC 13124 4202711 YP_695375.1 CDS CPF_0926 NC_008261.1 1089077 1090141 R identified by similarity to GB:AAF12706.1; match to protein family HMM PF00589; phage integrase site specific recombinase complement(1089077..1090141) Clostridium perfringens ATCC 13124 4201278 YP_695376.1 CDS CPF_0927 NC_008261.1 1090234 1090698 R identified by similarity to GB:AAL96793.1; match to protein family HMM PF06114; hypothetical protein complement(1090234..1090698) Clostridium perfringens ATCC 13124 4202533 YP_695377.1 CDS CPF_0928 NC_008261.1 1090714 1091217 R identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381; Cro/CI family transcriptional regulator complement(1090714..1091217) Clostridium perfringens ATCC 13124 4203335 YP_695378.1 CDS CPF_0929 NC_008261.1 1091369 1091605 D identified by similarity to GB:AAD44066.1; hypothetical protein 1091369..1091605 Clostridium perfringens ATCC 13124 4201927 YP_695379.1 CDS CPF_0930 NC_008261.1 1091617 1092348 D identified by match to protein family HMM PF02498; BRO domain-containing protein 1091617..1092348 Clostridium perfringens ATCC 13124 4202631 YP_695380.1 CDS CPF_0932 NC_008261.1 1092374 1092628 D identified by similarity to GB:AAN36269.1; hypothetical protein 1092374..1092628 Clostridium perfringens ATCC 13124 4203892 YP_695381.1 CDS CPF_0931 NC_008261.1 1092597 1093286 R hypothetical protein complement(1092597..1093286) Clostridium perfringens ATCC 13124 4201418 YP_695382.1 CDS CPF_0933 NC_008261.1 1093445 1093747 D hypothetical protein 1093445..1093747 Clostridium perfringens ATCC 13124 4203412 YP_695383.1 CDS CPF_0934 NC_008261.1 1093749 1093928 D identified by similarity to GB:AAL96798.1; hypothetical protein 1093749..1093928 Clostridium perfringens ATCC 13124 4202677 YP_695384.1 CDS CPF_0935 NC_008261.1 1093939 1094121 D hypothetical protein 1093939..1094121 Clostridium perfringens ATCC 13124 4203582 YP_695385.1 CDS CPF_0936 NC_008261.1 1094210 1094374 D hypothetical protein 1094210..1094374 Clostridium perfringens ATCC 13124 4201701 YP_695386.1 CDS CPF_0937 NC_008261.1 1094418 1094603 D hypothetical protein 1094418..1094603 Clostridium perfringens ATCC 13124 4202110 YP_695387.1 CDS CPF_0938 NC_008261.1 1094603 1095514 D identified by similarity to GB:CAB53837.1; hypothetical protein 1094603..1095514 Clostridium perfringens ATCC 13124 4202094 YP_695388.1 CDS CPF_0939 NC_008261.1 1095516 1096385 D identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; RecT family protein 1095516..1096385 Clostridium perfringens ATCC 13124 4203349 YP_695389.1 CDS CPF_0940 NC_008261.1 1096403 1097116 D identified by similarity to GB:CAB53839.1; hypothetical protein 1096403..1097116 Clostridium perfringens ATCC 13124 4202569 YP_695390.1 CDS CPF_0941 NC_008261.1 1097117 1097290 D hypothetical protein 1097117..1097290 Clostridium perfringens ATCC 13124 4201716 YP_695391.1 CDS CPF_0942 NC_008261.1 1097284 1097670 D identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 1097284..1097670 Clostridium perfringens ATCC 13124 4201705 YP_695392.1 CDS CPF_0943 NC_008261.1 1097820 1098467 D hypothetical protein 1097820..1098467 Clostridium perfringens ATCC 13124 4201592 YP_695393.1 CDS CPF_0945 NC_008261.1 1099026 1099499 D identified by similarity to GB:AAO35665.1; hypothetical protein 1099026..1099499 Clostridium perfringens ATCC 13124 4201410 YP_695394.1 CDS CPF_0947 NC_008261.1 1099982 1101157 D identified by similarity to GB:AAK03168.1; hypothetical protein 1099982..1101157 Clostridium perfringens ATCC 13124 4201138 YP_695395.1 CDS CPF_0948 NC_008261.1 1101226 1101693 D identified by similarity to SP:Q38627; match to protein family HMM PF03592; phage terminase small subunit 1101226..1101693 Clostridium perfringens ATCC 13124 4202851 YP_695396.1 CDS CPF_0949 NC_008261.1 1101686 1103050 D phage terminase, large subunit 1101686..1103050 Clostridium perfringens ATCC 13124 4201902 YP_695397.1 CDS CPF_0950 NC_008261.1 1103064 1103873 D hypothetical protein 1103064..1103873 Clostridium perfringens ATCC 13124 4201709 YP_695398.1 CDS CPF_0951 NC_008261.1 1103937 1105439 D phage minor capsid protein 1103937..1105439 Clostridium perfringens ATCC 13124 4203242 YP_695399.1 CDS CPF_0952 NC_008261.1 1105423 1107060 D phage minor capsid protein 1105423..1107060 Clostridium perfringens ATCC 13124 4203705 YP_695400.1 CDS CPF_0953 NC_008261.1 1107073 1107297 D hypothetical protein 1107073..1107297 Clostridium perfringens ATCC 13124 4203257 YP_695401.1 CDS CPF_0954 NC_008261.1 1107325 1107942 D identified by similarity to GB:AAN67551.1; hypothetical protein 1107325..1107942 Clostridium perfringens ATCC 13124 4201878 YP_695402.1 CDS CPF_0955 NC_008261.1 1108036 1108641 D identified by similarity to GB:BAC63730.1; hypothetical protein 1108036..1108641 Clostridium perfringens ATCC 13124 4201676 YP_695403.1 CDS CPF_0956 NC_008261.1 1108666 1109571 D identified by similarity to GB:AAA56848.1; phage major capsid protein 1108666..1109571 Clostridium perfringens ATCC 13124 4202095 YP_695404.1 CDS CPF_0957 NC_008261.1 1109586 1109855 D hypothetical protein 1109586..1109855 Clostridium perfringens ATCC 13124 4201173 YP_695405.1 CDS CPF_0958 NC_008261.1 1109891 1110253 D identified by similarity to GB:CAB53794.1; hypothetical protein 1109891..1110253 Clostridium perfringens ATCC 13124 4203529 YP_695406.1 CDS CPF_0959 NC_008261.1 1110257 1110583 D hypothetical protein 1110257..1110583 Clostridium perfringens ATCC 13124 4203075 YP_695407.1 CDS CPF_0960 NC_008261.1 1110583 1110966 D hypothetical protein 1110583..1110966 Clostridium perfringens ATCC 13124 4203903 YP_695408.1 CDS CPF_0961 NC_008261.1 1110966 1111352 D hypothetical protein 1110966..1111352 Clostridium perfringens ATCC 13124 4202982 YP_695409.1 CDS CPF_0962 NC_008261.1 1111362 1111820 D identified by similarity to PIR:AD1730; hypothetical protein 1111362..1111820 Clostridium perfringens ATCC 13124 4201036 YP_695410.1 CDS CPF_0963 NC_008261.1 1111833 1112201 D hypothetical protein 1111833..1112201 Clostridium perfringens ATCC 13124 4202736 YP_695411.1 CDS CPF_0964 NC_008261.1 1112290 1112523 D hypothetical protein 1112290..1112523 Clostridium perfringens ATCC 13124 4201496 YP_695412.1 CDS CPF_0965 NC_008261.1 1112564 1115776 D identified by similarity to GB:AAL96783.1; hypothetical protein 1112564..1115776 Clostridium perfringens ATCC 13124 4202989 YP_695413.1 CDS CPF_0966 NC_008261.1 1115780 1116133 D identified by similarity to GB:AAK27910.2; hypothetical protein 1115780..1116133 Clostridium perfringens ATCC 13124 4202805 YP_695414.1 CDS CPF_0967 NC_008261.1 1116156 1116422 D identified by similarity to PIR:B97132; hypothetical protein 1116156..1116422 Clostridium perfringens ATCC 13124 4201167 YP_695415.1 CDS CPF_0968 NC_008261.1 1116489 1116869 D identified by similarity to PIR:A97132; hypothetical protein 1116489..1116869 Clostridium perfringens ATCC 13124 4201835 YP_695416.1 CDS CPF_0969 NC_008261.1 1116905 1122013 D KID repeat-containing protein 1116905..1122013 Clostridium perfringens ATCC 13124 4203029 YP_695417.1 CDS CPF_0970 NC_008261.1 1122032 1122280 D identified by similarity to GB:AAL96787.1; hypothetical protein 1122032..1122280 Clostridium perfringens ATCC 13124 4201215 YP_695418.1 CDS CPF_0971 NC_008261.1 1122294 1122710 D identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; toxin secretion/phage lysis holin 1122294..1122710 Clostridium perfringens ATCC 13124 4203222 YP_695419.1 CDS CPF_0972 NC_008261.1 1122751 1123167 D identified by similarity to GB:BAA29564.1; hypothetical protein 1122751..1123167 Clostridium perfringens ATCC 13124 4202315 YP_695420.1 CDS CPF_0973 NC_008261.1 1123253 1124281 D identified by match to protein family HMM PF01183; glycosyl hydrolase 1123253..1124281 Clostridium perfringens ATCC 13124 4201722 YP_695421.1 CDS CPF_0974 NC_008261.1 1124699 1125361 D hypothetical protein 1124699..1125361 Clostridium perfringens ATCC 13124 4203823 YP_695422.1 CDS CPF_0975 NC_008261.1 1125585 1126673 D identified by similarity to GB:AAO35693.1; hypothetical protein 1125585..1126673 Clostridium perfringens ATCC 13124 4201553 YP_695423.1 CDS CPF_0976 NC_008261.1 1126678 1126959 D hypothetical protein 1126678..1126959 Clostridium perfringens ATCC 13124 4200999 YP_695424.1 CDS CPF_0977 NC_008261.1 1126966 1127691 D identified by similarity to GB:AAO35694.1; hypothetical protein 1126966..1127691 Clostridium perfringens ATCC 13124 4203154 YP_695425.1 CDS CPF_0978 NC_008261.1 1128751 1129536 R identified by match to protein family HMM PF01048; phosphorylase complement(1128751..1129536) Clostridium perfringens ATCC 13124 4201251 YP_695426.1 CDS CPF_0979 NC_008261.1 1129893 1130990 D hypothetical protein 1129893..1130990 Clostridium perfringens ATCC 13124 4201926 YP_695427.1 CDS CPF_0980 NC_008261.1 1131187 1131705 D identified by similarity to GB:AAK75063.1; match to protein family HMM PF08020; hypothetical protein 1131187..1131705 Clostridium perfringens ATCC 13124 4202470 YP_695428.1 CDS CPF_0981 NC_008261.1 1131742 1132584 D identified by similarity to GB:CAA15293.1; hypothetical protein 1131742..1132584 Clostridium perfringens ATCC 13124 4203525 YP_695429.1 CDS CPF_0982 NC_008261.1 1132601 1132915 D identified by similarity to GB:BAD66218.1; hypothetical protein 1132601..1132915 Clostridium perfringens ATCC 13124 4202282 YP_695430.1 CDS CPF_0983 NC_008261.1 1133107 1133844 R identified by similarity to GB:AAB99318.1; match to protein family HMM PF01261; hypothetical protein complement(1133107..1133844) Clostridium perfringens ATCC 13124 4203843 YP_695431.1 CDS CPF_0984 NC_008261.1 1134211 1134957 D hypothetical protein 1134211..1134957 Clostridium perfringens ATCC 13124 4200951 YP_695432.1 CDS CPF_0985 NC_008261.1 1135175 1136323 R identified by similarity to SP:P10481; match to protein family HMM PF02012; sialidase complement(1135175..1136323) Clostridium perfringens ATCC 13124 4201816 YP_695433.1 CDS CPF_0986 NC_008261.1 1137105 1138484 D identified by similarity to SP:Q56106; fliB domain-containing protein 1137105..1138484 Clostridium perfringens ATCC 13124 4203288 YP_695434.1 CDS CPF_0987 NC_008261.1 1138908 1139201 R identified by similarity to GB:AAM86130.1; hypothetical protein complement(1138908..1139201) Clostridium perfringens ATCC 13124 4202292 YP_695435.1 CDS CPF_0988 NC_008261.1 1139592 1140413 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(1139592..1140413) Clostridium perfringens ATCC 13124 4203544 YP_695436.1 CDS CPF_0989 NC_008261.1 1141378 1141770 D identified by similarity to PIR:A97215; hypothetical protein 1141378..1141770 Clostridium perfringens ATCC 13124 4201874 YP_695437.1 CDS CPF_0990 NC_008261.1 1142100 1143245 D hypothetical protein 1142100..1143245 Clostridium perfringens ATCC 13124 4201095 YP_695438.1 CDS CPF_0991 NC_008261.1 1143387 1143713 D hypothetical protein 1143387..1143713 Clostridium perfringens ATCC 13124 4202907 YP_695439.1 CDS CPF_0992 NC_008261.1 1143881 1145644 D identified by match to protein family HMM PF07728; McrB domain-containing protein 1143881..1145644 Clostridium perfringens ATCC 13124 4202818 YP_695440.1 CDS CPF_0993 NC_008261.1 1145648 1146961 D identified by similarity to PIR:D81431; hypothetical protein 1145648..1146961 Clostridium perfringens ATCC 13124 4201565 YP_695441.1 CDS CPF_0994 NC_008261.1 1146987 1147370 D hypothetical protein 1146987..1147370 Clostridium perfringens ATCC 13124 4202048 YP_695442.1 CDS CPF_0995 NC_008261.1 1147461 1148018 R identified by similarity to SP:O28488; hypothetical protein complement(1147461..1148018) Clostridium perfringens ATCC 13124 4201526 YP_695443.1 CDS CPF_0996 NC_008261.1 1148063 1148452 R hypothetical protein complement(1148063..1148452) Clostridium perfringens ATCC 13124 4202146 YP_695444.1 CDS CPF_0997 NC_008261.1 1148755 1149531 D lipoprotein 1148755..1149531 Clostridium perfringens ATCC 13124 4202705 YP_695445.1 CDS CPF_0998 NC_008261.1 1149913 1150716 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(1149913..1150716) Clostridium perfringens ATCC 13124 4203152 YP_695446.1 CDS CPF_1000 NC_008261.1 1151418 1151609 D hypothetical protein 1151418..1151609 Clostridium perfringens ATCC 13124 4201637 YP_695447.1 CDS CPF_1001 NC_008261.1 1151594 1151818 D hypothetical protein 1151594..1151818 Clostridium perfringens ATCC 13124 4201809 YP_695448.1 CDS CPF_1002 NC_008261.1 1152107 1153333 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase complement(1152107..1153333) Clostridium perfringens ATCC 13124 4203190 YP_695449.1 CDS CPF_1003 NC_008261.1 1153742 1154620 D identified by similarity to PIR:E71620; hypothetical protein 1153742..1154620 Clostridium perfringens ATCC 13124 4200981 YP_695450.1 CDS CPF_1004 NC_008261.1 1154922 1155041 D hypothetical protein 1154922..1155041 Clostridium perfringens ATCC 13124 4203194 YP_695451.1 CDS fmt NC_008261.1 1155215 1156168 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1155215..1156168) Clostridium perfringens ATCC 13124 4203845 YP_695452.1 CDS CPF_1006 NC_008261.1 1156381 1157175 R identified by similarity to PIR:D90881; match to protein family HMM PF02698; hypothetical protein complement(1156381..1157175) Clostridium perfringens ATCC 13124 4203049 YP_695453.1 CDS CPF_1007 NC_008261.1 1157270 1157641 R hypothetical protein complement(1157270..1157641) Clostridium perfringens ATCC 13124 4203911 YP_695454.1 CDS CPF_1008 NC_008261.1 1158231 1159394 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB 1158231..1159394 Clostridium perfringens ATCC 13124 4201815 YP_695455.1 CDS feoB NC_008261.1 1160156 1162279 R identified by similarity to SP:P33650; match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; ferrous iron transport protein B complement(1160156..1162279) Clostridium perfringens ATCC 13124 4201140 YP_695456.1 CDS feoA NC_008261.1 1162297 1162515 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(1162297..1162515) Clostridium perfringens ATCC 13124 4202683 YP_695457.1 CDS CPF_1011 NC_008261.1 1162940 1163290 D identified by similarity to GB:AAS43373.1; hypothetical protein 1162940..1163290 Clostridium perfringens ATCC 13124 4203714 YP_695458.1 CDS CPF_1012 NC_008261.1 1163290 1164111 D hypothetical protein 1163290..1164111 Clostridium perfringens ATCC 13124 4200996 YP_695459.1 CDS CPF_1013 NC_008261.1 1164131 1164424 D identified by similarity to GB:AAP27270.1; hypothetical protein 1164131..1164424 Clostridium perfringens ATCC 13124 4203022 YP_695460.1 CDS CPF_1014 NC_008261.1 1164914 1166227 D hypothetical protein 1164914..1166227 Clostridium perfringens ATCC 13124 4202057 YP_695461.1 CDS CPF_1015 NC_008261.1 1166292 1166957 R hypothetical protein complement(1166292..1166957) Clostridium perfringens ATCC 13124 4201112 YP_695462.1 CDS CPF_1016 NC_008261.1 1166971 1168458 R Possibly an isoschizomer of MboI found in Moraxella bovis.; identified by match to protein family HMM PF02976; type II restriction endonuclease complement(1166971..1168458) Clostridium perfringens ATCC 13124 4201602 YP_695463.1 CDS dcm NC_008261.1 1168761 1169984 D identified by similarity to GB:AAC98421.1; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 1168761..1169984 Clostridium perfringens ATCC 13124 4202877 YP_695464.1 CDS dcm NC_008261.1 1170044 1171384 D identified by similarity to SP:P20589; match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 1170044..1171384 Clostridium perfringens ATCC 13124 4202576 YP_695465.1 CDS CPF_1019 NC_008261.1 1171434 1171916 R hypothetical protein complement(1171434..1171916) Clostridium perfringens ATCC 13124 4202480 YP_695466.1 CDS CPF_1020 NC_008261.1 1172294 1172719 R identified by similarity to SP:P10426; match to protein family HMM PF06114; hypothetical protein complement(1172294..1172719) Clostridium perfringens ATCC 13124 4201915 YP_695467.1 CDS CPF_1021 NC_008261.1 1172854 1173396 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1172854..1173396) Clostridium perfringens ATCC 13124 4201964 YP_695468.1 CDS CPF_1022 NC_008261.1 1173694 1174608 D hypothetical protein 1173694..1174608 Clostridium perfringens ATCC 13124 4203470 YP_695469.1 CDS CPF_1023 NC_008261.1 1175129 1175359 D hypothetical protein 1175129..1175359 Clostridium perfringens ATCC 13124 4201822 YP_695470.1 CDS CPF_1024 NC_008261.1 1175800 1176030 D hypothetical protein 1175800..1176030 Clostridium perfringens ATCC 13124 4202660 YP_695471.1 CDS CPF_1025 NC_008261.1 1176353 1177627 D identified by match to protein family HMM PF00583; acetyltransferase 1176353..1177627 Clostridium perfringens ATCC 13124 4202067 YP_695472.1 CDS CPF_1026 NC_008261.1 1178112 1178423 R hypothetical protein complement(1178112..1178423) Clostridium perfringens ATCC 13124 4202285 YP_695473.1 CDS CPF_1027 NC_008261.1 1178726 1179541 D hypothetical protein 1178726..1179541 Clostridium perfringens ATCC 13124 4203940 YP_695474.1 CDS CPF_1028 NC_008261.1 1179642 1180868 R identified by similarity to SP:P02982; match to protein family HMM PF00083; match to protein family HMM PF07690; multidrug resistance protein complement(1179642..1180868) Clostridium perfringens ATCC 13124 4201164 YP_695475.1 CDS CPF_1029 NC_008261.1 1181122 1181595 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1181122..1181595) Clostridium perfringens ATCC 13124 4202721 YP_695476.1 CDS CPF_1030 NC_008261.1 1181874 1182305 D hypothetical protein 1181874..1182305 Clostridium perfringens ATCC 13124 4202806 YP_695477.1 CDS CPF_1031 NC_008261.1 1182338 1182733 R identified by similarity to SP:P08337; match to protein family HMM PF00293; mutator mutT protein complement(1182338..1182733) Clostridium perfringens ATCC 13124 4203161 YP_695478.1 CDS CPF_1032 NC_008261.1 1183107 1183316 D identified by match to protein family HMM PF01381; DNA-binding protein 1183107..1183316 Clostridium perfringens ATCC 13124 4202513 YP_695479.1 CDS CPF_1033 NC_008261.1 1183309 1183815 D hypothetical protein 1183309..1183815 Clostridium perfringens ATCC 13124 4203612 YP_695480.1 CDS CPF_1034 NC_008261.1 1184257 1184709 D identified by match to protein family HMM PF06803; hypothetical protein 1184257..1184709 Clostridium perfringens ATCC 13124 4202118 YP_695481.1 CDS CPF_1035 NC_008261.1 1185165 1186094 D lipoprotein 1185165..1186094 Clostridium perfringens ATCC 13124 4201165 YP_695482.1 CDS CPF_1036 NC_008261.1 1186126 1186515 D hypothetical protein 1186126..1186515 Clostridium perfringens ATCC 13124 4203553 YP_695483.1 CDS CPF_1037 NC_008261.1 1186516 1187205 D hypothetical protein 1186516..1187205 Clostridium perfringens ATCC 13124 4201757 YP_695484.1 CDS CPF_1038 NC_008261.1 1187379 1187696 R hypothetical protein complement(1187379..1187696) Clostridium perfringens ATCC 13124 4203223 YP_695485.1 CDS CPF_1039 NC_008261.1 1187903 1188598 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1187903..1188598) Clostridium perfringens ATCC 13124 4203828 YP_695486.1 CDS CPF_1040 NC_008261.1 1188620 1189324 R identified by match to protein family HMM PF03483; hypothetical protein complement(1188620..1189324) Clostridium perfringens ATCC 13124 4201632 YP_695487.1 CDS CPF_1041 NC_008261.1 1189698 1190255 D hypothetical protein 1189698..1190255 Clostridium perfringens ATCC 13124 4201130 YP_695488.1 CDS CPF_1042 NC_008261.1 1190807 1191157 D hypothetical protein 1190807..1191157 Clostridium perfringens ATCC 13124 4201382 YP_695489.1 CDS CPF_1043 NC_008261.1 1191279 1191758 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(1191279..1191758) Clostridium perfringens ATCC 13124 4201208 YP_695490.1 CDS CPF_1044 NC_008261.1 1192056 1192568 D hypothetical protein 1192056..1192568 Clostridium perfringens ATCC 13124 4202933 YP_695491.1 CDS CPF_1045 NC_008261.1 1192556 1193158 D hypothetical protein 1192556..1193158 Clostridium perfringens ATCC 13124 4202593 YP_695492.1 CDS fucO NC_008261.1 1193329 1194477 D identified by similarity to SP:P11549; match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase 1193329..1194477 Clostridium perfringens ATCC 13124 4202740 YP_695493.1 CDS CPF_1047 NC_008261.1 1194534 1195391 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1194534..1195391) Clostridium perfringens ATCC 13124 4202049 YP_695494.1 CDS fucI NC_008261.1 1195542 1197335 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 1195542..1197335 Clostridium perfringens ATCC 13124 4202763 YP_695495.1 CDS fucK NC_008261.1 1197356 1198858 D identified by similarity to GB:AAO78868.1; match to protein family HMM PF00370; L-fuculokinase 1197356..1198858 Clostridium perfringens ATCC 13124 4202012 YP_695496.1 CDS fucU NC_008261.1 1198852 1199289 D identified by similarity to SP:P11555; match to protein family HMM PF05025; fucose operon protein FucU 1198852..1199289 Clostridium perfringens ATCC 13124 4203234 YP_695497.1 CDS fucA NC_008261.1 1199318 1200022 D identified by similarity to SP:P11550; match to protein family HMM PF00596; L-fuculose phosphate aldolase 1199318..1200022 Clostridium perfringens ATCC 13124 4202743 YP_695498.1 CDS fucP NC_008261.1 1200057 1201391 D identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose permease 1200057..1201391 Clostridium perfringens ATCC 13124 4202981 YP_695499.1 CDS CPF_1053 NC_008261.1 1201696 1202742 D identified by match to protein family HMM PF01381; DNA-binding protein 1201696..1202742 Clostridium perfringens ATCC 13124 4201747 YP_695500.1 CDS CPF_1054 NC_008261.1 1202947 1203477 D identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 1202947..1203477 Clostridium perfringens ATCC 13124 4201022 YP_695501.1 CDS CPF_1055 NC_008261.1 1204006 1204554 D identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 1204006..1204554 Clostridium perfringens ATCC 13124 4202267 YP_695502.1 CDS CPF_1056 NC_008261.1 1204584 1205264 D identified by similarity to GB:BAB95170.1; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1204584..1205264 Clostridium perfringens ATCC 13124 4202217 YP_695503.1 CDS CPF_1057 NC_008261.1 1205257 1206513 D identified by similarity to PIR:F89918; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1205257..1206513 Clostridium perfringens ATCC 13124 4203689 YP_695504.1 CDS CPF_1058 NC_008261.1 1206647 1207432 D identified by match to protein family HMM PF05116; match to protein family HMM TIGR01484; cof family hydrolase 1206647..1207432 Clostridium perfringens ATCC 13124 4201841 YP_695505.1 CDS CPF_1059 NC_008261.1 1207726 1208283 R identified by match to protein family HMM PF00583; acetyltransferase complement(1207726..1208283) Clostridium perfringens ATCC 13124 4203685 YP_695506.1 CDS CPF_1060 NC_008261.1 1208403 1208894 R hypothetical protein complement(1208403..1208894) Clostridium perfringens ATCC 13124 4203026 YP_695507.1 CDS CPF_1061 NC_008261.1 1209210 1209668 D identified by match to protein family HMM PF00583; acetyltransferase 1209210..1209668 Clostridium perfringens ATCC 13124 4202551 YP_695508.1 CDS CPF_1062 NC_008261.1 1209702 1210151 R identified by similarity to SP:P32090; match to protein family HMM PF00293; NUDIX family hydrolase complement(1209702..1210151) Clostridium perfringens ATCC 13124 4203676 YP_695509.1 CDS CPF_1063 NC_008261.1 1210301 1210510 D hypothetical protein 1210301..1210510 Clostridium perfringens ATCC 13124 4201360 YP_695510.1 CDS CPF_1064 NC_008261.1 1210835 1212460 D identified by similarity to SP:P32701; match to protein family HMM PF00563; diguanylate phosphodiesterase 1210835..1212460 Clostridium perfringens ATCC 13124 4203119 YP_695511.1 CDS CPF_1065 NC_008261.1 1212579 1212926 D hypothetical protein 1212579..1212926 Clostridium perfringens ATCC 13124 4203603 YP_695512.1 CDS CPF_1066 NC_008261.1 1213436 1213594 D identified by similarity to PIR:E97064; hypothetical protein 1213436..1213594 Clostridium perfringens ATCC 13124 4201454 YP_695513.1 CDS cotJB NC_008261.1 1213607 1213858 D identified by similarity to SP:Q45537; spore coat protein CotJB 1213607..1213858 Clostridium perfringens ATCC 13124 4203418 YP_695514.1 CDS cotJC NC_008261.1 1213871 1214437 D identified by similarity to SP:Q45538; match to protein family HMM PF05067; spore coat protein CotJC 1213871..1214437 Clostridium perfringens ATCC 13124 4203338 YP_695515.1 CDS CPF_1069 NC_008261.1 1214613 1214831 R identified by similarity to GB:AAP26047.1; hypothetical protein complement(1214613..1214831) Clostridium perfringens ATCC 13124 4203315 YP_695516.1 CDS CPF_1070 NC_008261.1 1215484 1216935 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 1215484..1216935 Clostridium perfringens ATCC 13124 4200945 YP_695517.1 CDS CPF_1071 NC_008261.1 1217212 1217538 D identified by similarity to GB:BAB81086.1; hypothetical protein 1217212..1217538 Clostridium perfringens ATCC 13124 4201596 YP_695518.1 CDS CPF_1072 NC_008261.1 1217606 1217959 D hypothetical protein 1217606..1217959 Clostridium perfringens ATCC 13124 4202472 YP_695519.1 CDS CPF_1073 NC_008261.1 1218551 1224979 D identified by match to protein family HMM PF00754; match to protein family HMM PF07554; discoidin domain-containing protein 1218551..1224979 Clostridium perfringens ATCC 13124 4201929 YP_695520.1 CDS CPF_1074 NC_008261.1 1225148 1225447 R hypothetical protein complement(1225148..1225447) Clostridium perfringens ATCC 13124 4201989 YP_695521.1 CDS CPF_1075 NC_008261.1 1225790 1226188 D identified by similarity to GB:BAB80595.1; hypothetical protein 1225790..1226188 Clostridium perfringens ATCC 13124 4203652 YP_695522.1 CDS CPF_1076 NC_008261.1 1226670 1228760 D identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512; [Fe] hydrogenase 1226670..1228760 Clostridium perfringens ATCC 13124 4203697 YP_695523.1 CDS CPF_1077 NC_008261.1 1229188 1230621 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 1229188..1230621 Clostridium perfringens ATCC 13124 4201672 YP_695524.1 CDS CPF_1078 NC_008261.1 1230684 1230983 R hypothetical protein complement(1230684..1230983) Clostridium perfringens ATCC 13124 4201973 YP_695525.1 CDS CPF_1079 NC_008261.1 1231260 1231358 D hypothetical protein 1231260..1231358 Clostridium perfringens ATCC 13124 4202185 YP_695526.1 CDS CPF_1080 NC_008261.1 1231448 1232005 D lipoprotein 1231448..1232005 Clostridium perfringens ATCC 13124 4202434 YP_695527.1 CDS CPF_1081 NC_008261.1 1232192 1233535 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1232192..1233535) Clostridium perfringens ATCC 13124 4203006 YP_695528.1 CDS CPF_1082 NC_008261.1 1233775 1234200 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1233775..1234200) Clostridium perfringens ATCC 13124 4201758 YP_695529.1 CDS CPF_1083 NC_008261.1 1234312 1234443 D hypothetical protein 1234312..1234443 Clostridium perfringens ATCC 13124 4203547 YP_695530.1 CDS CPF_1084 NC_008261.1 1234421 1234894 D hypothetical protein 1234421..1234894 Clostridium perfringens ATCC 13124 4202330 YP_695531.1 CDS CPF_1085 NC_008261.1 1234935 1235414 D identified by match to protein family HMM PF00583; acetyltransferase 1234935..1235414 Clostridium perfringens ATCC 13124 4201892 YP_695532.1 CDS CPF_1086 NC_008261.1 1235541 1236104 R identified by similarity to GB:BAC12292.1; hypothetical protein complement(1235541..1236104) Clostridium perfringens ATCC 13124 4203866 YP_695533.1 CDS CPF_1087 NC_008261.1 1237102 1245018 D identified by match to protein family HMM PF00128; match to protein family HMM PF02368; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR01167; match to protein family HMM TIGR02104; pullulanase 1237102..1245018 Clostridium perfringens ATCC 13124 4203707 YP_695534.1 CDS CPF_1088 NC_008261.1 1245204 1245383 R identified by similarity to GB:AAO83068.1; hypothetical protein complement(1245204..1245383) Clostridium perfringens ATCC 13124 4203001 YP_695535.1 CDS CPF_1089 NC_008261.1 1245440 1246039 R identified by similarity to PIR:C97066; match to protein family HMM PF02698; hypothetical protein complement(1245440..1246039) Clostridium perfringens ATCC 13124 4203042 YP_695536.1 CDS CPF_1090 NC_008261.1 1246197 1246496 R lipoprotein complement(1246197..1246496) Clostridium perfringens ATCC 13124 4203121 YP_695537.1 CDS CPF_1091 NC_008261.1 1246869 1247126 D hypothetical protein 1246869..1247126 Clostridium perfringens ATCC 13124 4203393 YP_695538.1 CDS CPF_1092 NC_008261.1 1247365 1247949 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 1247365..1247949 Clostridium perfringens ATCC 13124 4201893 YP_695539.1 CDS CPF_1093 NC_008261.1 1247942 1248724 D hypothetical protein 1247942..1248724 Clostridium perfringens ATCC 13124 4202925 YP_695540.1 CDS CPF_1094 NC_008261.1 1248718 1249590 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1248718..1249590 Clostridium perfringens ATCC 13124 4202403 YP_695541.1 CDS CPF_1095 NC_008261.1 1249595 1250866 D hypothetical protein 1249595..1250866 Clostridium perfringens ATCC 13124 4202343 YP_695542.1 CDS CPF_1096 NC_008261.1 1250901 1252049 D hypothetical protein 1250901..1252049 Clostridium perfringens ATCC 13124 4203797 YP_695543.1 CDS CPF_1097 NC_008261.1 1252251 1252802 R hypothetical protein complement(1252251..1252802) Clostridium perfringens ATCC 13124 4201864 YP_695544.1 CDS CPF_1098 NC_008261.1 1253040 1253390 R hypothetical protein complement(1253040..1253390) Clostridium perfringens ATCC 13124 4201582 YP_695545.1 CDS CPF_1099 NC_008261.1 1253541 1253813 D hypothetical protein 1253541..1253813 Clostridium perfringens ATCC 13124 4203620 YP_695546.1 CDS CPF_1100 NC_008261.1 1256110 1256430 D identified by similarity to GB:AAP08932.1; hypothetical protein 1256110..1256430 Clostridium perfringens ATCC 13124 4202559 YP_695547.1 CDS CPF_1101 NC_008261.1 1256667 1258130 D identified by match to protein family HMM PF00884; sulfatase 1256667..1258130 Clostridium perfringens ATCC 13124 4203593 YP_695548.1 CDS CPF_1102 NC_008261.1 1258382 1259071 R identified by similarity to GB:AAO35944.1; match to protein family HMM PF01794; hypothetical protein complement(1258382..1259071) Clostridium perfringens ATCC 13124 4202882 YP_695549.1 CDS CPF_1103 NC_008261.1 1259269 1261191 D identified by match to protein family HMM PF00728; glycosyl hydrolase 1259269..1261191 Clostridium perfringens ATCC 13124 4203528 YP_695550.1 CDS CPF_1104 NC_008261.1 1261496 1261717 D hypothetical protein 1261496..1261717 Clostridium perfringens ATCC 13124 4202930 YP_695551.1 CDS CPF_1105 NC_008261.1 1262167 1262631 D identified by similarity to GB:AAO75267.1; hypothetical protein 1262167..1262631 Clostridium perfringens ATCC 13124 4201935 YP_695552.1 CDS CPF_1106 NC_008261.1 1262784 1263206 D identified by match to protein family HMM PF01047; match to protein family HMM PF01978; MarR family transcriptional regulator 1262784..1263206 Clostridium perfringens ATCC 13124 4201873 YP_695553.1 CDS CPF_1107 NC_008261.1 1263374 1264051 D hypothetical protein 1263374..1264051 Clostridium perfringens ATCC 13124 4203852 YP_695554.1 CDS CPF_1108 NC_008261.1 1264229 1264960 D hypothetical protein 1264229..1264960 Clostridium perfringens ATCC 13124 4201272 YP_695555.1 CDS CPF_1109 NC_008261.1 1265288 1265839 D hypothetical protein 1265288..1265839 Clostridium perfringens ATCC 13124 4201908 YP_695556.1 CDS CPF_1110 NC_008261.1 1266078 1267121 R identified by match to protein family HMM PF01757; acyltransferase complement(1266078..1267121) Clostridium perfringens ATCC 13124 4202257 YP_695557.1 CDS CPF_1111 NC_008261.1 1267397 1268917 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 1267397..1268917 Clostridium perfringens ATCC 13124 4202865 YP_695558.1 CDS CPF_1112 NC_008261.1 1268935 1270659 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 1268935..1270659 Clostridium perfringens ATCC 13124 4201934 YP_695559.1 CDS CPF_1113 NC_008261.1 1270941 1272200 D identified by match to protein family HMM PF01547; sugar ABC transporter sugar-binding protein 1270941..1272200 Clostridium perfringens ATCC 13124 4201694 YP_695560.1 CDS CPF_1114 NC_008261.1 1272288 1273193 D identified by similarity to SP:P94529; match to protein family HMM PF00528; sugar ABC transporter permease 1272288..1273193 Clostridium perfringens ATCC 13124 4203174 YP_695561.1 CDS CPF_1115 NC_008261.1 1273190 1274047 D identified by similarity to SP:P94530; match to protein family HMM PF00528; sugar ABC transporter permease 1273190..1274047 Clostridium perfringens ATCC 13124 4202968 YP_695562.1 CDS CPF_1116 NC_008261.1 1274067 1274936 D identified by similarity to GB:BAB80196.1; hypothetical protein 1274067..1274936 Clostridium perfringens ATCC 13124 4201098 YP_695563.1 CDS CPF_1117 NC_008261.1 1274949 1277291 D identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636; glycosyl hydrolase 1274949..1277291 Clostridium perfringens ATCC 13124 4202661 YP_695564.1 CDS CPF_1118 NC_008261.1 1277372 1278247 D hypothetical protein 1277372..1278247 Clostridium perfringens ATCC 13124 4203274 YP_695565.1 CDS gngC NC_008261.1 1278343 1279605 D identified by similarity to GB:BAB69460.1; match to protein family HMM PF00722; endo-beta-galactosidase, GlcNAc-alpha-1,4-Gal-releasing 1278343..1279605 Clostridium perfringens ATCC 13124 4203716 YP_695566.1 CDS CPF_1120 NC_008261.1 1279757 1279924 R hypothetical protein complement(1279757..1279924) Clostridium perfringens ATCC 13124 4202803 YP_695567.1 CDS CPF_1121 NC_008261.1 1280108 1280578 D hypothetical protein 1280108..1280578 Clostridium perfringens ATCC 13124 4203482 YP_695568.1 CDS CPF_1122 NC_008261.1 1280868 1281395 D hypothetical protein 1280868..1281395 Clostridium perfringens ATCC 13124 4202351 YP_695569.1 CDS CPF_1123 NC_008261.1 1281873 1286585 D identified by similarity to GB:AAK27981.1; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167; cell wall-associated serine proteinase 1281873..1286585 Clostridium perfringens ATCC 13124 4203634 YP_695570.1 CDS CPF_1124 NC_008261.1 1287175 1287411 D hypothetical protein 1287175..1287411 Clostridium perfringens ATCC 13124 4202715 YP_695571.1 CDS feoB NC_008261.1 1287671 1289680 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(1287671..1289680) Clostridium perfringens ATCC 13124 4202758 YP_695572.1 CDS CPF_1126 NC_008261.1 1289895 1290116 R identified by match to protein family HMM PF04023; feoA family protein complement(1289895..1290116) Clostridium perfringens ATCC 13124 4201155 YP_695573.1 CDS feoA NC_008261.1 1290147 1290365 R identified by similarity to SP:P33649; match to protein family HMM PF04023; ferrous iron transport protein A complement(1290147..1290365) Clostridium perfringens ATCC 13124 4202664 YP_695574.1 CDS CPF_1128 NC_008261.1 1290415 1290681 R identified by similarity to PIR:E97027; hypothetical protein complement(1290415..1290681) Clostridium perfringens ATCC 13124 4201871 YP_695575.1 CDS CPF_1129 NC_008261.1 1291849 1292280 R identified by match to protein family HMM PF00583; acetyltransferase complement(1291849..1292280) Clostridium perfringens ATCC 13124 4201244 YP_695576.1 CDS CPF_1130 NC_008261.1 1292597 1292707 D hypothetical protein 1292597..1292707 Clostridium perfringens ATCC 13124 4203486 YP_695577.1 CDS CPF_1131 NC_008261.1 1292908 1293528 D hypothetical protein 1292908..1293528 Clostridium perfringens ATCC 13124 4203769 YP_695578.1 CDS CPF_1132 NC_008261.1 1293709 1294302 D hypothetical protein 1293709..1294302 Clostridium perfringens ATCC 13124 4202601 YP_695579.1 CDS CPF_1133 NC_008261.1 1295026 1295997 D identified by similarity to GB:AAP27300.1; hypothetical protein 1295026..1295997 Clostridium perfringens ATCC 13124 4201380 YP_695580.1 CDS CPF_1134 NC_008261.1 1296246 1296425 D identified by similarity to GB:AAP11485.1; hypothetical protein 1296246..1296425 Clostridium perfringens ATCC 13124 4203650 YP_695581.1 CDS CPF_1135 NC_008261.1 1296514 1297332 R identified by match to protein family HMM PF00037; match to protein family HMM PF00881; nitroreductase complement(1296514..1297332) Clostridium perfringens ATCC 13124 4203298 YP_695582.1 CDS CPF_1136 NC_008261.1 1297629 1297955 D identified by match to protein family HMM PF01638; transcriptional regulator 1297629..1297955 Clostridium perfringens ATCC 13124 4202117 YP_695583.1 CDS CPF_1137 NC_008261.1 1298210 1300132 D identified by similarity to GB:AAO82003.1; match to protein family HMM PF05976; hypothetical protein 1298210..1300132 Clostridium perfringens ATCC 13124 4201169 YP_695584.1 CDS CPF_1138 NC_008261.1 1300286 1300687 D hypothetical protein 1300286..1300687 Clostridium perfringens ATCC 13124 4203865 YP_695585.1 CDS CPF_1139 NC_008261.1 1300967 1301650 D identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1300967..1301650 Clostridium perfringens ATCC 13124 4203051 YP_695586.1 CDS CPF_1140 NC_008261.1 1301654 1302910 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1301654..1302910 Clostridium perfringens ATCC 13124 4203184 YP_695587.1 CDS CPF_1141 NC_008261.1 1303158 1303844 D identified by similarity to GB:BAC14469.1; hypothetical protein 1303158..1303844 Clostridium perfringens ATCC 13124 4201477 YP_695588.1 CDS CPF_1142 NC_008261.1 1303940 1304629 D identified by similarity to GB:BAC14468.1; hypothetical protein 1303940..1304629 Clostridium perfringens ATCC 13124 4201833 YP_695589.1 CDS CPF_1143 NC_008261.1 1304725 1306764 D identified by similarity to GB:BAC14467.1; hypothetical protein 1304725..1306764 Clostridium perfringens ATCC 13124 4203761 YP_695590.1 CDS CPF_1144 NC_008261.1 1306960 1307829 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1306960..1307829 Clostridium perfringens ATCC 13124 4203041 YP_695591.1 CDS CPF_1145 NC_008261.1 1308049 1309422 D identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1308049..1309422 Clostridium perfringens ATCC 13124 4201283 YP_695592.1 CDS CPF_1146 NC_008261.1 1309503 1310750 R identified by similarity to GB:AAM32443.1; hypothetical protein complement(1309503..1310750) Clostridium perfringens ATCC 13124 4203849 YP_695593.1 CDS CPF_1147 NC_008261.1 1310920 1311867 D hypothetical protein 1310920..1311867 Clostridium perfringens ATCC 13124 4202792 YP_695594.1 CDS CPF_1148 NC_008261.1 1312094 1315303 D identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; helicase 1312094..1315303 Clostridium perfringens ATCC 13124 4203780 YP_695595.1 CDS CPF_1149 NC_008261.1 1315634 1315759 D hypothetical protein 1315634..1315759 Clostridium perfringens ATCC 13124 4203387 YP_695596.1 CDS CPF_1150 NC_008261.1 1315800 1316468 D hypothetical protein 1315800..1316468 Clostridium perfringens ATCC 13124 4202106 YP_695597.1 CDS CPF_1151 NC_008261.1 1316688 1317374 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase 1316688..1317374 Clostridium perfringens ATCC 13124 4201594 YP_695598.1 CDS CPF_1152 NC_008261.1 1317389 1318063 D hypothetical protein 1317389..1318063 Clostridium perfringens ATCC 13124 4202273 YP_695599.1 CDS mgtA NC_008261.1 1318654 1321323 D identified by similarity to PIR:B39083; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 1318654..1321323 Clostridium perfringens ATCC 13124 4202596 YP_695600.1 CDS CPF_1154 NC_008261.1 1321433 1322194 D identified by similarity to SP:P07914; match to protein family HMM PF00106; match to protein family HMM PF01370; 7-alpha-hydroxysteroid dehydrogenase 1321433..1322194 Clostridium perfringens ATCC 13124 4201527 YP_695601.1 CDS CPF_1155 NC_008261.1 1322470 1323156 D identified by match to protein family HMM PF02308; MgtC family protein 1322470..1323156 Clostridium perfringens ATCC 13124 4201859 YP_695602.1 CDS CPF_1156 NC_008261.1 1323322 1324476 R identified by similarity to SP:Q56106; lysine-N-methylase-like protein complement(1323322..1324476) Clostridium perfringens ATCC 13124 4203431 YP_695603.1 CDS CPF_1157 NC_008261.1 1324726 1325232 D identified by match to protein family HMM PF00583; acetyltransferase 1324726..1325232 Clostridium perfringens ATCC 13124 4202167 YP_695604.1 CDS CPF_1158 NC_008261.1 1325410 1326423 D identified by similarity to PIR:F86821; match to protein family HMM PF02129; hypothetical protein 1325410..1326423 Clostridium perfringens ATCC 13124 4201199 YP_695605.1 CDS dedA NC_008261.1 1326587 1327231 R identified by similarity to SP:P09548; dedA protein complement(1326587..1327231) Clostridium perfringens ATCC 13124 4202458 YP_695606.1 CDS CPF_1160 NC_008261.1 1327488 1328204 D identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; nitrite/sulfite reductase 1327488..1328204 Clostridium perfringens ATCC 13124 4203243 YP_695607.1 CDS CPF_1161 NC_008261.1 1328232 1328576 D hypothetical protein 1328232..1328576 Clostridium perfringens ATCC 13124 4202211 YP_695608.1 CDS CPF_1162 NC_008261.1 1328592 1328870 D identified by similarity to GB:AAS08237.1; hypothetical protein 1328592..1328870 Clostridium perfringens ATCC 13124 4201849 YP_695609.1 CDS CPF_1163 NC_008261.1 1328955 1329947 D identified by similarity to GB:AAO35927.1; hypothetical protein 1328955..1329947 Clostridium perfringens ATCC 13124 4203590 YP_695610.1 CDS CPF_1164 NC_008261.1 1330169 1331968 D identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1330169..1331968 Clostridium perfringens ATCC 13124 4203624 YP_695611.1 CDS CPF_1165 NC_008261.1 1332038 1332583 D identified by match to protein family HMM PF00881; nitroreductase 1332038..1332583 Clostridium perfringens ATCC 13124 4202918 YP_695612.1 CDS CPF_1166 NC_008261.1 1332864 1333490 D hypothetical protein 1332864..1333490 Clostridium perfringens ATCC 13124 4201456 YP_695613.1 CDS CPF_1167 NC_008261.1 1333517 1333930 D hypothetical protein 1333517..1333930 Clostridium perfringens ATCC 13124 4202439 YP_695614.1 CDS CPF_1168 NC_008261.1 1333999 1334829 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 1333999..1334829 Clostridium perfringens ATCC 13124 4203926 YP_695615.1 CDS CPF_1169 NC_008261.1 1335006 1335182 D identified by similarity to GB:AAM25863.1; hypothetical protein 1335006..1335182 Clostridium perfringens ATCC 13124 4202506 YP_695616.1 CDS CPF_1170 NC_008261.1 1335411 1336115 D identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 1335411..1336115 Clostridium perfringens ATCC 13124 4203365 YP_695617.1 CDS CPF_1171 NC_008261.1 1336302 1337534 D identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 1336302..1337534 Clostridium perfringens ATCC 13124 4201591 YP_695618.1 CDS CPF_1172 NC_008261.1 1337554 1338306 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 1337554..1338306 Clostridium perfringens ATCC 13124 4201408 YP_695619.1 CDS CPF_1173 NC_008261.1 1338644 1340308 D identified by similarity to GB:AAB96343.1; match to protein family HMM PF02286; coenzyme B12-dependent glycerol dehydratase, large subunit 1338644..1340308 Clostridium perfringens ATCC 13124 4203123 YP_695620.1 CDS CPF_1174 NC_008261.1 1340322 1340888 D identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288; coenzyme B12-dependent glycerol dehydratase, medium subunit 1340322..1340888 Clostridium perfringens ATCC 13124 4201183 YP_695621.1 CDS CPF_1175 NC_008261.1 1340908 1341333 D identified by similarity to GB:AAC27924.1; match to protein family HMM PF02287; coenzyme B12-dependent glycerol dehydratase, small subunit 1340908..1341333 Clostridium perfringens ATCC 13124 4203195 YP_695622.1 CDS dhaF NC_008261.1 1341350 1343200 D identified by similarity to GB:AAB48853.1; glycerol dehydratase reactivation factor, large subunit 1341350..1343200 Clostridium perfringens ATCC 13124 4202130 YP_695623.1 CDS dhaG NC_008261.1 1343193 1343543 D glycerol dehydratase reactivation factor, small subunit 1343193..1343543 Clostridium perfringens ATCC 13124 4202227 YP_695624.1 CDS CPF_1178 NC_008261.1 1343562 1344074 D identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; ATP:cob(I)alamin adenosyltransferase 1343562..1344074 Clostridium perfringens ATCC 13124 4202134 YP_695625.1 CDS CPF_1179 NC_008261.1 1344098 1344526 D identified by similarity to GB:AAP48648.1; match to protein family HMM PF03928; hypothetical protein 1344098..1344526 Clostridium perfringens ATCC 13124 4203004 YP_695626.1 CDS dhaT NC_008261.1 1344620 1345777 D identified by similarity to SP:P45513; match to protein family HMM PF00465; 1,3-propanediol dehydrogenase 1344620..1345777 Clostridium perfringens ATCC 13124 4203839 YP_695627.1 CDS CPF_1181 NC_008261.1 1346362 1347831 D identified by match to protein family HMM PF00324; amino acid permease 1346362..1347831 Clostridium perfringens ATCC 13124 4201006 YP_695628.1 CDS CPF_1182 NC_008261.1 1348121 1348795 D identified by similarity to SP:P58769; match to protein family HMM PF01794; hypothetical protein 1348121..1348795 Clostridium perfringens ATCC 13124 4201305 YP_695629.1 CDS CPF_1183 NC_008261.1 1349143 1349655 D identified by match to protein family HMM PF00583; acetyltransferase 1349143..1349655 Clostridium perfringens ATCC 13124 4201887 YP_695630.1 CDS CPF_1184 NC_008261.1 1349723 1350502 R identified by similarity to GB:AAP09389.1; hypothetical protein complement(1349723..1350502) Clostridium perfringens ATCC 13124 4202807 YP_695631.1 CDS CPF_1185 NC_008261.1 1350618 1351436 R hypothetical protein complement(1350618..1351436) Clostridium perfringens ATCC 13124 4201865 YP_695632.1 CDS CPF_1186 NC_008261.1 1351547 1351915 R identified by match to protein family HMM PF07784; hypothetical protein complement(1351547..1351915) Clostridium perfringens ATCC 13124 4201460 YP_695633.1 CDS CPF_1187 NC_008261.1 1351938 1352282 R identified by similarity to GB:AAO75277.1; match to protein family HMM PF07784; hypothetical protein complement(1351938..1352282) Clostridium perfringens ATCC 13124 4203815 YP_695634.1 CDS CPF_1188 NC_008261.1 1352466 1353455 D identified by similarity to SP:P07000; match to protein family HMM PF00561; lysophospholipase 1352466..1353455 Clostridium perfringens ATCC 13124 4202766 YP_695635.1 CDS CPF_1189 NC_008261.1 1353512 1354168 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(1353512..1354168) Clostridium perfringens ATCC 13124 4203851 YP_695636.1 CDS CPF_1190 NC_008261.1 1354425 1355201 R hypothetical protein complement(1354425..1355201) Clostridium perfringens ATCC 13124 4203703 YP_695637.1 CDS CPF_1191 NC_008261.1 1356064 1357371 D identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter family protein 1356064..1357371 Clostridium perfringens ATCC 13124 4203407 YP_695638.1 CDS CPF_1192 NC_008261.1 1357715 1358404 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1357715..1358404 Clostridium perfringens ATCC 13124 4201133 YP_695639.1 CDS CPF_1193 NC_008261.1 1358614 1359534 D identified by similarity to SP:P42332; match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein 1358614..1359534 Clostridium perfringens ATCC 13124 4201568 YP_695640.1 CDS CPF_1194 NC_008261.1 1359527 1360279 D identified by similarity to SP:P42333; hypothetical protein 1359527..1360279 Clostridium perfringens ATCC 13124 4203600 YP_695641.2 CDS hpkA NC_008261.1 1360293 1361198 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1360293..1361198 Clostridium perfringens ATCC 13124 4201146 YP_695642.1 CDS CPF_1196 NC_008261.1 1361302 1361529 R identified by similarity to GB:AAO52845.1; hypothetical protein complement(1361302..1361529) Clostridium perfringens ATCC 13124 4201718 YP_695643.1 CDS CPF_1197 NC_008261.1 1361829 1363040 D identified by match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase 1361829..1363040 Clostridium perfringens ATCC 13124 4201921 YP_695644.1 CDS CPF_1198 NC_008261.1 1363257 1363793 D identified by match to protein family HMM PF00255; glutathione peroxidase 1363257..1363793 Clostridium perfringens ATCC 13124 4201590 YP_695645.1 CDS CPF_1199 NC_008261.1 1364004 1364669 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1364004..1364669 Clostridium perfringens ATCC 13124 4203068 YP_695646.1 CDS CPF_1200 NC_008261.1 1364725 1365642 D hypothetical protein 1364725..1365642 Clostridium perfringens ATCC 13124 4201312 YP_695647.1 CDS CPF_1201 NC_008261.1 1365653 1366948 D identified by match to protein family HMM PF02687; permease 1365653..1366948 Clostridium perfringens ATCC 13124 4201919 YP_695648.1 CDS CPF_1202 NC_008261.1 1367043 1368245 R identified by match to protein family HMM PF01391; triple helix repeat-containing collagen complement(1367043..1368245) Clostridium perfringens ATCC 13124 4203155 YP_695649.1 CDS CPF_1203 NC_008261.1 1368347 1368937 R identified by match to protein family HMM PF04307; metal-dependent hydrolase, membrane-bound complement(1368347..1368937) Clostridium perfringens ATCC 13124 4201836 YP_695650.1 CDS CPF_1204 NC_008261.1 1369129 1369356 R hypothetical protein complement(1369129..1369356) Clostridium perfringens ATCC 13124 4202817 YP_695651.1 CDS CPF_1205 NC_008261.1 1369560 1370174 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 1369560..1370174 Clostridium perfringens ATCC 13124 4201679 YP_695652.1 CDS CPF_1206 NC_008261.1 1370269 1370424 R hypothetical protein complement(1370269..1370424) Clostridium perfringens ATCC 13124 4203116 YP_695653.1 CDS CPF_1207 NC_008261.1 1370553 1371194 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1370553..1371194 Clostridium perfringens ATCC 13124 4203631 YP_695654.1 CDS CPF_1208 NC_008261.1 1371401 1371832 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1371401..1371832 Clostridium perfringens ATCC 13124 4201233 YP_695655.1 CDS CPF_1209 NC_008261.1 1372101 1372193 D K+-transporting ATPase subunit F 1372101..1372193 Clostridium perfringens ATCC 13124 4201348 YP_695656.1 CDS kdpA NC_008261.1 1372186 1373922 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 1372186..1373922 Clostridium perfringens ATCC 13124 4202932 YP_695657.1 CDS kdpB NC_008261.1 1373936 1376002 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 1373936..1376002 Clostridium perfringens ATCC 13124 4201016 YP_695658.1 CDS kdpC NC_008261.1 1376017 1376613 D one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 1376017..1376613 Clostridium perfringens ATCC 13124 4202753 YP_695659.1 CDS kdpD NC_008261.1 1376625 1379327 D identified by similarity to SP:P94608; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 1376625..1379327 Clostridium perfringens ATCC 13124 4203914 YP_695660.1 CDS kdpE NC_008261.1 1379302 1380015 D identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdpE 1379302..1380015 Clostridium perfringens ATCC 13124 4202176 YP_695661.1 CDS CPF_1215 NC_008261.1 1380017 1380388 D hypothetical protein 1380017..1380388 Clostridium perfringens ATCC 13124 4201683 YP_695662.1 CDS CPF_1216 NC_008261.1 1380631 1381590 D hypothetical protein 1380631..1381590 Clostridium perfringens ATCC 13124 4201951 YP_695663.1 CDS CPF_1217 NC_008261.1 1381694 1383316 R identified by match to protein family HMM PF00324; amino acid permease complement(1381694..1383316) Clostridium perfringens ATCC 13124 4201667 YP_695664.1 CDS CPF_1218 NC_008261.1 1383719 1383889 D hypothetical protein 1383719..1383889 Clostridium perfringens ATCC 13124 4203376 YP_695665.1 CDS CPF_1219 NC_008261.1 1384000 1384122 D hypothetical protein 1384000..1384122 Clostridium perfringens ATCC 13124 4202568 YP_695666.1 CDS CPF_1220 NC_008261.1 1384213 1385850 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1384213..1385850) Clostridium perfringens ATCC 13124 4202635 YP_695667.1 CDS lacZ NC_008261.1 1386055 1390422 D identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; match to protein family HMM TIGR01167; beta-galactosidase 1386055..1390422 Clostridium perfringens ATCC 13124 4203932 YP_695668.1 CDS CPF_1222 NC_008261.1 1390797 1391276 D hypothetical protein 1390797..1391276 Clostridium perfringens ATCC 13124 4203847 YP_695669.1 CDS CPF_1223 NC_008261.1 1391813 1392976 D identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1391813..1392976 Clostridium perfringens ATCC 13124 4203555 YP_695670.1 CDS CPF_1224 NC_008261.1 1393308 1394303 D hypothetical protein 1393308..1394303 Clostridium perfringens ATCC 13124 4201804 YP_695671.1 CDS CPF_1225 NC_008261.1 1394319 1394438 D hypothetical protein 1394319..1394438 Clostridium perfringens ATCC 13124 4203232 YP_695672.1 CDS CPF_1226 NC_008261.1 1394596 1396506 D hypothetical protein 1394596..1396506 Clostridium perfringens ATCC 13124 4201039 YP_695673.1 CDS CPF_1227 NC_008261.1 1396754 1398208 R identified by match to protein family HMM PF00999; match to protein family HMM PF02080; monovalent cation:proton antiporter-2 (CPA2) family protein complement(1396754..1398208) Clostridium perfringens ATCC 13124 4203170 YP_695674.1 CDS CPF_1228 NC_008261.1 1398237 1398857 R identified by similarity to GB:AAU19924.1; hypothetical protein complement(1398237..1398857) Clostridium perfringens ATCC 13124 4201051 YP_695675.1 CDS CPF_1229 NC_008261.1 1399095 1399880 D identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphate phosphatase 1399095..1399880 Clostridium perfringens ATCC 13124 4203217 YP_695676.1 CDS CPF_1230 NC_008261.1 1399912 1400052 R hypothetical protein complement(1399912..1400052) Clostridium perfringens ATCC 13124 4202003 YP_695677.1 CDS CPF_1231 NC_008261.1 1400064 1400234 R hypothetical protein complement(1400064..1400234) Clostridium perfringens ATCC 13124 4201524 YP_695678.1 CDS CPF_1232 NC_008261.1 1400550 1401569 R identified by similarity to GB:AAU17187.1; hypothetical protein complement(1400550..1401569) Clostridium perfringens ATCC 13124 4203363 YP_695679.1 CDS CPF_1233 NC_008261.1 1401770 1403710 D identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231; tetracycline resistance protein 1401770..1403710 Clostridium perfringens ATCC 13124 4201081 YP_695680.1 CDS CPF_1234 NC_008261.1 1403875 1404228 D hypothetical protein 1403875..1404228 Clostridium perfringens ATCC 13124 4202729 YP_695681.1 CDS CPF_1235 NC_008261.1 1404332 1406329 R identified by match to protein family HMM PF02705; potassium transporter complement(1404332..1406329) Clostridium perfringens ATCC 13124 4202916 YP_695682.1 CDS CPF_1236 NC_008261.1 1406857 1407369 R identified by match to protein family HMM PF00210; ferritin complement(1406857..1407369) Clostridium perfringens ATCC 13124 4203564 YP_695683.1 CDS CPF_1237 NC_008261.1 1407519 1408337 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883; AraC family transcriptional regulator complement(1407519..1408337) Clostridium perfringens ATCC 13124 4201861 YP_695684.1 CDS CPF_1238 NC_008261.1 1408498 1410330 D identified by match to protein family HMM PF00728; glycosyl hydrolase 1408498..1410330 Clostridium perfringens ATCC 13124 4201260 YP_695685.1 CDS CPF_1239 NC_008261.1 1410448 1410915 D hypothetical protein 1410448..1410915 Clostridium perfringens ATCC 13124 4202250 YP_695686.1 CDS CPF_1240 NC_008261.1 1411035 1411805 R identified by similarity to PIR:B96993; hypothetical protein complement(1411035..1411805) Clostridium perfringens ATCC 13124 4203872 YP_695687.1 CDS spoVAF NC_008261.1 1411936 1413357 R identified by similarity to SP:P31845; match to protein family HMM PF03323; spore germination protein AF complement(1411936..1413357) Clostridium perfringens ATCC 13124 4202138 YP_695688.1 CDS CPF_1242 NC_008261.1 1413590 1415098 R identified by match to protein family HMM PF03600; match to protein family HMM PF03606; dicarboxylate transporter complement(1413590..1415098) Clostridium perfringens ATCC 13124 4202897 YP_695689.1 CDS CPF_1243 NC_008261.1 1415500 1417371 D identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1415500..1417371 Clostridium perfringens ATCC 13124 4203114 YP_695690.1 CDS CPF_1244 NC_008261.1 1417595 1418662 D hypothetical protein 1417595..1418662 Clostridium perfringens ATCC 13124 4202054 YP_695691.1 CDS sdhB NC_008261.1 1418694 1419374 D identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 1418694..1419374 Clostridium perfringens ATCC 13124 4203203 YP_695692.1 CDS sdhA NC_008261.1 1419378 1420256 D identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1419378..1420256 Clostridium perfringens ATCC 13124 4201409 YP_695693.1 CDS CPF_1247 NC_008261.1 1420324 1421058 R identified by match to protein family HMM PF01171; match to protein family HMM PF06508; exoenzyme S synthesis protein B complement(1420324..1421058) Clostridium perfringens ATCC 13124 4203316 YP_695694.1 CDS truA NC_008261.1 1421265 1422011 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1421265..1422011 Clostridium perfringens ATCC 13124 4202906 YP_695695.1 CDS CPF_1249 NC_008261.1 1422078 1423145 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(1422078..1423145) Clostridium perfringens ATCC 13124 4203841 YP_695696.1 CDS CPF_1250 NC_008261.1 1423346 1424056 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1423346..1424056 Clostridium perfringens ATCC 13124 4203248 YP_695697.1 CDS CPF_1251 NC_008261.1 1424113 1425024 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1424113..1425024) Clostridium perfringens ATCC 13124 4201882 YP_695698.1 CDS CPF_1252 NC_008261.1 1425168 1426202 D identified by match to protein family HMM PF05343; aminopeptidase 1425168..1426202 Clostridium perfringens ATCC 13124 4203635 YP_695699.1 CDS CPF_1253 NC_008261.1 1426521 1427192 D hypothetical protein 1426521..1427192 Clostridium perfringens ATCC 13124 4202335 YP_695700.1 CDS CPF_1254 NC_008261.1 1427208 1428884 D hypothetical protein 1427208..1428884 Clostridium perfringens ATCC 13124 4202871 YP_695701.1 CDS gltX NC_008261.1 1429551 1431209 D identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1429551..1431209 Clostridium perfringens ATCC 13124 4202557 YP_695702.1 CDS CPF_1256 NC_008261.1 1431385 1431540 D identified by similarity to PIR:A96978; hypothetical protein 1431385..1431540 Clostridium perfringens ATCC 13124 4203172 YP_695703.1 CDS CPF_1257 NC_008261.1 1431768 1432382 D identified by similarity to PIR:E97022; match to protein family HMM PF06571; hypothetical protein 1431768..1432382 Clostridium perfringens ATCC 13124 4203741 YP_695704.1 CDS aspD NC_008261.1 1432475 1434097 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1432475..1434097) Clostridium perfringens ATCC 13124 4202542 YP_695705.1 CDS CPF_1259 NC_008261.1 1434229 1435251 R hypothetical protein complement(1434229..1435251) Clostridium perfringens ATCC 13124 4201473 YP_695706.1 CDS CPF_1260 NC_008261.1 1435556 1435735 D identified by similarity to SP:P60083; match to protein family HMM PF05979; hypothetical protein 1435556..1435735 Clostridium perfringens ATCC 13124 4202809 YP_695707.1 CDS hprK NC_008261.1 1435747 1436670 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1435747..1436670 Clostridium perfringens ATCC 13124 4201557 YP_695708.1 CDS CPF_1262 NC_008261.1 1436715 1437644 D identified by match to protein family HMM PF01544; cation transporter 1436715..1437644 Clostridium perfringens ATCC 13124 4202165 YP_695709.1 CDS CPF_1263 NC_008261.1 1437711 1439117 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1437711..1439117 Clostridium perfringens ATCC 13124 4203348 YP_695710.1 CDS CPF_1264 NC_008261.1 1439242 1440765 D identified by similarity to GB:AAC61683.1; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1439242..1440765 Clostridium perfringens ATCC 13124 4201326 YP_695711.1 CDS mgsA NC_008261.1 1440934 1441293 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1440934..1441293 Clostridium perfringens ATCC 13124 4202202 YP_695712.1 CDS CPF_1266 NC_008261.1 1441486 1441746 D identified by similarity to GB:BAD75135.1; hypothetical protein 1441486..1441746 Clostridium perfringens ATCC 13124 4201078 YP_695713.1 CDS CPF_1267 NC_008261.1 1441830 1442210 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1441830..1442210 Clostridium perfringens ATCC 13124 4203327 YP_695714.1 CDS CPF_1268 NC_008261.1 1442254 1442499 D identified by similarity to PIR:C97194; hypothetical protein 1442254..1442499 Clostridium perfringens ATCC 13124 4202745 YP_695715.1 CDS CPF_1269 NC_008261.1 1442606 1445242 R identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992; rubredoxin/flavodoxin/oxidoreductase complement(1442606..1445242) Clostridium perfringens ATCC 13124 4201492 YP_695716.1 CDS CPF_1270 NC_008261.1 1445447 1446289 R identified by similarity to PIR:D84071; match to protein family HMM PF02811; hypothetical protein complement(1445447..1446289) Clostridium perfringens ATCC 13124 4203737 YP_695717.1 CDS pabA NC_008261.1 1446556 1447146 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1446556..1447146 Clostridium perfringens ATCC 13124 4203934 YP_695718.1 CDS pabB NC_008261.1 1447152 1448498 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 1447152..1448498 Clostridium perfringens ATCC 13124 4202570 YP_695719.1 CDS CPF_1273 NC_008261.1 1448552 1449286 D identified by similarity to GB:AAO91868.1; match to protein family HMM PF01063; branched-chain amino acid aminotransferase 1448552..1449286 Clostridium perfringens ATCC 13124 4202887 YP_695720.1 CDS folE NC_008261.1 1449301 1449858 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1449301..1449858 Clostridium perfringens ATCC 13124 4202604 YP_695721.1 CDS CPF_1275 NC_008261.1 1449884 1450357 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1449884..1450357 Clostridium perfringens ATCC 13124 4201639 YP_695722.1 CDS folP NC_008261.1 1450370 1451179 D identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1450370..1451179 Clostridium perfringens ATCC 13124 4203062 YP_695723.1 CDS folBK NC_008261.1 1451192 1452013 D identified by similarity to SP:P22291; match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 1451192..1452013 Clostridium perfringens ATCC 13124 4202432 YP_695724.1 CDS CPF_1278 NC_008261.1 1452084 1452551 R lipoprotein complement(1452084..1452551) Clostridium perfringens ATCC 13124 4201727 YP_695725.1 CDS CPF_1279 NC_008261.1 1452669 1453109 D hypothetical protein 1452669..1453109 Clostridium perfringens ATCC 13124 4201995 YP_695726.1 CDS CPF_1281 NC_008261.1 1453478 1454560 D identified by match to protein family HMM PF00224; pyruvate kinase barrel domain-containing protein 1453478..1454560 Clostridium perfringens ATCC 13124 4202295 YP_695727.1 CDS CPF_1280 NC_008261.1 1454557 1455114 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1454557..1455114) Clostridium perfringens ATCC 13124 4201042 YP_695728.1 CDS CPF_1283 NC_008261.1 1455336 1456739 D hypothetical protein 1455336..1456739 Clostridium perfringens ATCC 13124 4202452 YP_695729.1 CDS CPF_1282 NC_008261.1 1456736 1457077 R identified by match to protein family HMM PF02641; hypothetical protein complement(1456736..1457077) Clostridium perfringens ATCC 13124 4201412 YP_695730.1 CDS crcB NC_008261.1 1457097 1457483 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1457097..1457483) Clostridium perfringens ATCC 13124 4203647 YP_695731.1 CDS CPF_1285 NC_008261.1 1458047 1459450 D identified by similarity to PIR:D83749; hypothetical protein 1458047..1459450 Clostridium perfringens ATCC 13124 4202676 YP_695732.1 CDS CPF_1286 NC_008261.1 1459669 1460403 D identified by match to protein family HMM PF01022; match to protein family HMM PF02579; ArsR family transcriptional regulator 1459669..1460403 Clostridium perfringens ATCC 13124 4201982 YP_695733.1 CDS CPF_1287 NC_008261.1 1460615 1461913 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1460615..1461913 Clostridium perfringens ATCC 13124 4201037 YP_695734.1 CDS CPF_1288 NC_008261.1 1462223 1463023 R identified by match to protein family HMM PF01633; match to protein family HMM PF01636; choline/ethanolamine kinase complement(1462223..1463023) Clostridium perfringens ATCC 13124 4201483 YP_695735.1 CDS cobT NC_008261.1 1463088 1464173 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1463088..1464173 Clostridium perfringens ATCC 13124 4202333 YP_695736.1 CDS CPF_1290 NC_008261.1 1464211 1464771 D hypothetical protein 1464211..1464771 Clostridium perfringens ATCC 13124 4203888 YP_695737.1 CDS cobS NC_008261.1 1464755 1465510 D identified by similarity to SP:P36561; match to protein family HMM PF02654; cobalamin-5-phosphate synthase 1464755..1465510 Clostridium perfringens ATCC 13124 4203665 YP_695738.1 CDS CPF_1292 NC_008261.1 1465524 1465904 D identified by similarity to GB:BAD76543.1; hypothetical protein 1465524..1465904 Clostridium perfringens ATCC 13124 4201768 YP_695739.1 CDS CPF_1293 NC_008261.1 1465909 1466553 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 1465909..1466553 Clostridium perfringens ATCC 13124 4203798 YP_695740.1 CDS cobD NC_008261.1 1466556 1467503 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1466556..1467503 Clostridium perfringens ATCC 13124 4202247 YP_695741.1 CDS CPF_1295 NC_008261.1 1467500 1468564 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1467500..1468564 Clostridium perfringens ATCC 13124 4203832 YP_695742.1 CDS CPF_1296 NC_008261.1 1469138 1470055 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1469138..1470055 Clostridium perfringens ATCC 13124 4201243 YP_695743.1 CDS CPF_1297 NC_008261.1 1470042 1471073 D identified by match to protein family HMM PF01032; iron ABC transporter permease 1470042..1471073 Clostridium perfringens ATCC 13124 4203153 YP_695744.1 CDS CPF_1298 NC_008261.1 1471078 1471833 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1471078..1471833 Clostridium perfringens ATCC 13124 4202149 YP_695745.1 CDS CPF_1299 NC_008261.1 1471843 1472496 D identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290; hypothetical protein 1471843..1472496 Clostridium perfringens ATCC 13124 4203333 YP_695746.1 CDS cobQ NC_008261.1 1472506 1473969 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1472506..1473969 Clostridium perfringens ATCC 13124 4203728 YP_695747.1 CDS CPF_1301 NC_008261.1 1474245 1480142 D identified by similarity to SP:Q9F234; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF01055; match to protein family HMM PF02368; match to protein family HMM PF07554; glycosyl hydrolase 31 protein 1474245..1480142 Clostridium perfringens ATCC 13124 4202370 YP_695748.1 CDS CPF_1302 NC_008261.1 1480235 1480684 D hypothetical protein 1480235..1480684 Clostridium perfringens ATCC 13124 4202424 YP_695749.1 CDS CPF_1303 NC_008261.1 1480907 1481350 D hypothetical protein 1480907..1481350 Clostridium perfringens ATCC 13124 4202840 YP_695750.1 CDS CPF_1304 NC_008261.1 1481572 1482738 D identified by similarity to GB:AAS10713.1; hypothetical protein 1481572..1482738 Clostridium perfringens ATCC 13124 4202945 YP_695751.1 CDS mtnN NC_008261.1 1483031 1483831 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1483031..1483831 Clostridium perfringens ATCC 13124 4202538 YP_695752.1 CDS CPF_1306 NC_008261.1 1483878 1484021 R hypothetical protein complement(1483878..1484021) Clostridium perfringens ATCC 13124 4202686 YP_695753.1 CDS cfa NC_008261.1 1484182 1485366 R identified by similarity to SP:P30010; match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(1484182..1485366) Clostridium perfringens ATCC 13124 4201889 YP_695754.1 CDS CPF_1308 NC_008261.1 1485699 1487054 D identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 1485699..1487054 Clostridium perfringens ATCC 13124 4202098 YP_695755.1 CDS CPF_1309 NC_008261.1 1487058 1487483 D hypothetical protein 1487058..1487483 Clostridium perfringens ATCC 13124 4203674 YP_695756.1 CDS CPF_1310 NC_008261.1 1487787 1488026 D identified by similarity to PIR:D97107; hypothetical protein 1487787..1488026 Clostridium perfringens ATCC 13124 4202995 YP_695757.1 CDS CPF_1311 NC_008261.1 1488217 1489005 D identified by match to protein family HMM PF03372; hypothetical protein 1488217..1489005 Clostridium perfringens ATCC 13124 4201309 YP_695758.1 CDS hisK NC_008261.1 1489189 1490013 D catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 1489189..1490013 Clostridium perfringens ATCC 13124 4202221 YP_695759.1 CDS CPF_1313 NC_008261.1 1490139 1491560 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(1490139..1491560) Clostridium perfringens ATCC 13124 4202286 YP_695760.1 CDS nadE NC_008261.1 1491920 1493827 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1491920..1493827) Clostridium perfringens ATCC 13124 4203081 YP_695761.1 CDS CPF_1315 NC_008261.1 1494141 1494554 D identified by similarity to PIR:H97029; match to protein family HMM PF01957; hypothetical protein 1494141..1494554 Clostridium perfringens ATCC 13124 4201103 YP_695762.1 CDS CPF_1316 NC_008261.1 1494574 1495524 D identified by match to protein family HMM PF01145; hypothetical protein 1494574..1495524 Clostridium perfringens ATCC 13124 4201724 YP_695763.1 CDS CPF_1317 NC_008261.1 1495704 1496756 D identified by match to protein family HMM PF01168; alanine racemase 1495704..1496756 Clostridium perfringens ATCC 13124 4201302 YP_695764.1 CDS rnfG NC_008261.1 1496989 1498023 D identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 1496989..1498023 Clostridium perfringens ATCC 13124 4202111 YP_695765.1 CDS rnfE NC_008261.1 1498041 1498709 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1498041..1498709 Clostridium perfringens ATCC 13124 4203765 YP_695766.1 CDS rnfA NC_008261.1 1498740 1499315 D identified by similarity to GB:BAB35759.1; match to protein family HMM PF02508; match to protein family HMM TIGR01943; RnfABCDGE type electron transport complex subunit A 1498740..1499315 Clostridium perfringens ATCC 13124 4202410 YP_695767.1 CDS rnfB NC_008261.1 1499332 1500153 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 1499332..1500153 Clostridium perfringens ATCC 13124 4203430 YP_695768.1 CDS CPF_1322 NC_008261.1 1500217 1500717 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1500217..1500717 Clostridium perfringens ATCC 13124 4203108 YP_695769.1 CDS CPF_1323 NC_008261.1 1500889 1501353 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1500889..1501353 Clostridium perfringens ATCC 13124 4201174 YP_695770.1 CDS fabH NC_008261.1 1501355 1502329 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1501355..1502329 Clostridium perfringens ATCC 13124 4203901 YP_695771.1 CDS fabD NC_008261.1 1502426 1503370 D identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1502426..1503370 Clostridium perfringens ATCC 13124 4202084 YP_695772.1 CDS fabG NC_008261.1 1503374 1504114 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1503374..1504114 Clostridium perfringens ATCC 13124 4202235 YP_695773.1 CDS fabF NC_008261.1 1504129 1505370 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1504129..1505370 Clostridium perfringens ATCC 13124 4203532 YP_695774.1 CDS accB NC_008261.1 1505382 1505873 D identified by similarity to SP:P49786; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1505382..1505873 Clostridium perfringens ATCC 13124 4203185 YP_695775.1 CDS fabZ NC_008261.1 1505876 1506295 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1505876..1506295 Clostridium perfringens ATCC 13124 4203211 YP_695776.1 CDS accC NC_008261.1 1506307 1507659 D identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; biotin carboxylase 1506307..1507659 Clostridium perfringens ATCC 13124 4203054 YP_695777.1 CDS accD NC_008261.1 1507652 1508530 D identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1507652..1508530 Clostridium perfringens ATCC 13124 4202308 YP_695778.1 CDS accA NC_008261.1 1508523 1509338 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1508523..1509338 Clostridium perfringens ATCC 13124 4201755 YP_695779.1 CDS CPF_1333 NC_008261.1 1509437 1509826 R identified by match to protein family HMM PF03551; PadR family transcriptional regulator complement(1509437..1509826) Clostridium perfringens ATCC 13124 4201834 YP_695780.1 CDS CPF_1334 NC_008261.1 1509910 1510164 D hypothetical protein 1509910..1510164 Clostridium perfringens ATCC 13124 4203091 YP_695781.1 CDS CPF_1335 NC_008261.1 1510222 1511040 R identified by match to protein family HMM PF01261; AP endonuclease complement(1510222..1511040) Clostridium perfringens ATCC 13124 4202707 YP_695782.1 CDS rluB NC_008261.1 1511257 1511967 D identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase B 1511257..1511967 Clostridium perfringens ATCC 13124 4201745 YP_695783.1 CDS CPF_1337 NC_008261.1 1511973 1512524 D identified by similarity to GB:CAD47129.1; match to protein family HMM PF06962; hypothetical protein 1511973..1512524 Clostridium perfringens ATCC 13124 4203809 YP_695784.1 CDS CPF_1338 NC_008261.1 1512556 1513431 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 1512556..1513431 Clostridium perfringens ATCC 13124 4203645 YP_695785.1 CDS CPF_1339 NC_008261.1 1513648 1514868 D identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 1513648..1514868 Clostridium perfringens ATCC 13124 4203296 YP_695786.1 CDS cmk NC_008261.1 1514990 1515643 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1514990..1515643 Clostridium perfringens ATCC 13124 4203941 YP_695787.1 CDS ispH NC_008261.1 1515645 1516493 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1515645..1516493 Clostridium perfringens ATCC 13124 4203260 YP_695788.1 CDS CPF_1342 NC_008261.1 1516603 1517397 D identified by match to protein family HMM PF00583; acetyltransferase 1516603..1517397 Clostridium perfringens ATCC 13124 4201879 YP_695789.1 CDS CPF_1343 NC_008261.1 1517497 1517646 R identified by similarity to PIR:H97126; hypothetical protein complement(1517497..1517646) Clostridium perfringens ATCC 13124 4201365 YP_695790.1 CDS CPF_1344 NC_008261.1 1517783 1518355 D hypothetical protein 1517783..1518355 Clostridium perfringens ATCC 13124 4203106 YP_695791.1 CDS CPF_1345 NC_008261.1 1518494 1518958 D hypothetical protein 1518494..1518958 Clostridium perfringens ATCC 13124 4201552 YP_695792.1 CDS CPF_1346 NC_008261.1 1519004 1519474 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(1519004..1519474) Clostridium perfringens ATCC 13124 4202394 YP_695793.1 CDS CPF_1347 NC_008261.1 1519658 1520050 R hypothetical protein complement(1519658..1520050) Clostridium perfringens ATCC 13124 4203698 YP_695794.1 CDS CPF_1348 NC_008261.1 1520410 1521390 D identified by similarity to SP:P54965; match to protein family HMM PF02275; choloylglycine hydrolase 1520410..1521390 Clostridium perfringens ATCC 13124 4203937 YP_695795.1 CDS miaB NC_008261.1 1521576 1522919 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1521576..1522919 Clostridium perfringens ATCC 13124 4202345 YP_695796.1 CDS ppcA NC_008261.1 1523375 1524988 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1523375..1524988 Clostridium perfringens ATCC 13124 4202414 YP_695797.1 CDS CPF_1351 NC_008261.1 1525273 1526067 R lipoprotein complement(1525273..1526067) Clostridium perfringens ATCC 13124 4201416 YP_695798.1 CDS CPF_1352 NC_008261.1 1526666 1526773 D hypothetical protein 1526666..1526773 Clostridium perfringens ATCC 13124 4203413 YP_695799.1 CDS CPF_1353 NC_008261.1 1527071 1527580 D hypothetical protein 1527071..1527580 Clostridium perfringens ATCC 13124 4202646 YP_695800.1 CDS CPF_1354 NC_008261.1 1528044 1528631 D hypothetical protein 1528044..1528631 Clostridium perfringens ATCC 13124 4201286 YP_695801.1 CDS CPF_1355 NC_008261.1 1528745 1529080 D hypothetical protein 1528745..1529080 Clostridium perfringens ATCC 13124 4201304 YP_695802.1 CDS pfl NC_008261.1 1529447 1531681 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1529447..1531681 Clostridium perfringens ATCC 13124 4201491 YP_695803.1 CDS pflA NC_008261.1 1531761 1532468 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 1531761..1532468 Clostridium perfringens ATCC 13124 4202519 YP_695804.1 CDS mutS NC_008261.1 1532731 1535463 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1532731..1535463 Clostridium perfringens ATCC 13124 4201810 YP_695805.1 CDS mutL NC_008261.1 1535490 1537514 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1535490..1537514 Clostridium perfringens ATCC 13124 4201601 YP_695806.1 CDS miaA NC_008261.1 1537532 1538464 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1537532..1538464 Clostridium perfringens ATCC 13124 4202869 YP_695807.1 CDS CPF_1361 NC_008261.1 1538508 1538750 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1538508..1538750 Clostridium perfringens ATCC 13124 4202553 YP_695808.1 CDS CPF_1362 NC_008261.1 1538855 1540135 D identified by match to protein family HMM PF06838; aluminum resistance protein 1538855..1540135 Clostridium perfringens ATCC 13124 4203176 YP_695809.1 CDS CPF_1363 NC_008261.1 1540394 1541299 D hypothetical protein 1540394..1541299 Clostridium perfringens ATCC 13124 4202854 YP_695810.1 CDS lexA NC_008261.1 1541479 1542090 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1541479..1542090) Clostridium perfringens ATCC 13124 4203478 YP_695811.1 CDS CPF_1365 NC_008261.1 1542298 1542690 D identified by similarity to GB:AAO35863.1; hypothetical protein 1542298..1542690 Clostridium perfringens ATCC 13124 4201438 YP_695812.1 CDS xerC NC_008261.1 1542781 1544133 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1542781..1544133) Clostridium perfringens ATCC 13124 4202535 YP_695813.1 CDS CPF_1367 NC_008261.1 1544649 1544867 R identified by similarity to PIR:G97219; hypothetical protein complement(1544649..1544867) Clostridium perfringens ATCC 13124 4202706 YP_695814.1 CDS tdcB NC_008261.1 1544986 1546194 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1544986..1546194 Clostridium perfringens ATCC 13124 4201723 YP_695815.1 CDS CPF_1369 NC_008261.1 1546235 1547704 R identified by similarity to SP:P25737; match to protein family HMM PF00324; lysine-specific permease complement(1546235..1547704) Clostridium perfringens ATCC 13124 4201290 YP_695816.1 CDS CPF_1370 NC_008261.1 1548207 1549427 D identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1548207..1549427 Clostridium perfringens ATCC 13124 4202971 YP_695817.1 CDS CPF_1371 NC_008261.1 1549462 1549794 R hypothetical protein complement(1549462..1549794) Clostridium perfringens ATCC 13124 4203493 YP_695818.1 CDS CPF_1372 NC_008261.1 1550070 1550714 D identified by similarity to GB:AAV43180.1; match to protein family HMM PF02588; hypothetical protein 1550070..1550714 Clostridium perfringens ATCC 13124 4201813 YP_695819.1 CDS CPF_1373 NC_008261.1 1550747 1550965 R hypothetical protein complement(1550747..1550965) Clostridium perfringens ATCC 13124 4202231 YP_695820.1 CDS CPF_1374 NC_008261.1 1551028 1551411 R mutator mutT-like protein complement(1551028..1551411) Clostridium perfringens ATCC 13124 4202341 YP_695821.1 CDS CPF_1375 NC_008261.1 1551763 1552497 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; haloacid dehalogenase complement(1551763..1552497) Clostridium perfringens ATCC 13124 4203215 YP_695822.1 CDS CPF_1376 NC_008261.1 1552668 1553204 D identified by similarity to GB:AAM24193.1; hypothetical protein 1552668..1553204 Clostridium perfringens ATCC 13124 4201359 YP_695823.1 CDS xth NC_008261.1 1553235 1553987 R identified by similarity to SP:P37454; match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(1553235..1553987) Clostridium perfringens ATCC 13124 4203280 YP_695824.1 CDS CPF_1378 NC_008261.1 1554219 1554446 D identified by similarity to PDB:1Y9W; acetyltransferase domain-containing protein 1554219..1554446 Clostridium perfringens ATCC 13124 4202839 YP_695825.1 CDS CPF_1379 NC_008261.1 1554567 1554989 R identified by match to protein family HMM PF00583; acetyltransferase complement(1554567..1554989) Clostridium perfringens ATCC 13124 4203747 YP_695826.1 CDS CPF_1380 NC_008261.1 1555038 1555154 R hypothetical protein complement(1555038..1555154) Clostridium perfringens ATCC 13124 4203352 YP_695827.1 CDS pyrE NC_008261.1 1555312 1555890 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1555312..1555890) Clostridium perfringens ATCC 13124 4201573 YP_695828.1 CDS pyrD NC_008261.1 1556039 1556938 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1556039..1556938) Clostridium perfringens ATCC 13124 4202917 YP_695829.1 CDS pyrK NC_008261.1 1556958 1557698 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(1556958..1557698) Clostridium perfringens ATCC 13124 4201258 YP_695830.1 CDS pyrF NC_008261.1 1557723 1558586 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1557723..1558586) Clostridium perfringens ATCC 13124 4203558 YP_695831.1 CDS pyrC NC_008261.1 1558596 1559795 R identified by similarity to SP:P48795; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type complement(1558596..1559795) Clostridium perfringens ATCC 13124 4201280 YP_695832.1 CDS pyrB NC_008261.1 1559980 1560903 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1559980..1560903) Clostridium perfringens ATCC 13124 4202689 YP_695833.1 CDS CPF_1388 NC_008261.1 1561294 1562073 R identified by similarity to SP:P37322; beta-lactamase complement(1561294..1562073) Clostridium perfringens ATCC 13124 4202183 YP_695834.1 CDS CPF_1389 NC_008261.1 1562304 1563401 R identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483; phosphofructokinase complement(1562304..1563401) Clostridium perfringens ATCC 13124 4203159 YP_695835.1 CDS CPF_1390 NC_008261.1 1563614 1564528 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1563614..1564528) Clostridium perfringens ATCC 13124 4202324 YP_695836.1 CDS manA NC_008261.1 1564788 1565765 R identified by similarity to SP:Q59935; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(1564788..1565765) Clostridium perfringens ATCC 13124 4202091 YP_695837.1 CDS CPF_1392 NC_008261.1 1566016 1567371 D UDP-N-acetylmuramyl tripeptide synthetase MurC-like protein 1566016..1567371 Clostridium perfringens ATCC 13124 4201270 YP_695838.1 CDS CPF_1393 NC_008261.1 1567389 1568120 D identified by match to protein family HMM PF07685; CobB/CobQ family glutamine amidotransferase 1567389..1568120 Clostridium perfringens ATCC 13124 4200970 YP_695839.1 CDS CPF_1394 NC_008261.1 1568360 1568548 D hypothetical protein 1568360..1568548 Clostridium perfringens ATCC 13124 4201999 YP_695840.1 CDS CPF_1395 NC_008261.1 1568567 1568764 D hypothetical protein 1568567..1568764 Clostridium perfringens ATCC 13124 4201581 YP_695841.1 CDS CPF_1396 NC_008261.1 1568823 1569725 R identified by similarity to GB:AAO35411.1; hypothetical protein complement(1568823..1569725) Clostridium perfringens ATCC 13124 4202290 YP_695842.1 CDS CPF_1397 NC_008261.1 1569982 1571244 D von Willebrand factor A 1569982..1571244 Clostridium perfringens ATCC 13124 4203521 YP_695843.1 CDS CPF_1398 NC_008261.1 1571291 1572067 R identified by match to protein family HMM PF06541; hypothetical protein complement(1571291..1572067) Clostridium perfringens ATCC 13124 4201870 YP_695844.1 CDS CPF_1399 NC_008261.1 1572117 1572527 R hypothetical protein complement(1572117..1572527) Clostridium perfringens ATCC 13124 4201911 YP_695845.1 CDS CPF_1400 NC_008261.1 1572642 1574138 R identified by match to protein family HMM PF00324; amino acid permease complement(1572642..1574138) Clostridium perfringens ATCC 13124 4201998 YP_695846.1 CDS CPF_1401 NC_008261.1 1574452 1575030 D identified by similarity to PIR:AF1870; hypothetical protein 1574452..1575030 Clostridium perfringens ATCC 13124 4202668 YP_695847.1 CDS CPF_1402 NC_008261.1 1575064 1576500 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1575064..1576500) Clostridium perfringens ATCC 13124 4201854 YP_695848.1 CDS CPF_1403 NC_008261.1 1576487 1577164 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1576487..1577164) Clostridium perfringens ATCC 13124 4201978 YP_695849.1 CDS CPF_1404 NC_008261.1 1577145 1577300 R hypothetical protein complement(1577145..1577300) Clostridium perfringens ATCC 13124 4203632 YP_695850.1 CDS CPF_1405 NC_008261.1 1577411 1578673 R identified by similarity to GB:AAP78125.1; hypothetical protein complement(1577411..1578673) Clostridium perfringens ATCC 13124 4201245 YP_695851.1 CDS CPF_1406 NC_008261.1 1578682 1581609 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase complement(1578682..1581609) Clostridium perfringens ATCC 13124 4201083 YP_695852.1 CDS CPF_1407 NC_008261.1 1581901 1583889 R identified by match to protein family HMM PF04055; hypothetical protein complement(1581901..1583889) Clostridium perfringens ATCC 13124 4203294 YP_695853.1 CDS CPF_1408 NC_008261.1 1584089 1586434 R identified by similarity to SP:P26659; match to protein family HMM PF06733; ATP-dependent helicase complement(1584089..1586434) Clostridium perfringens ATCC 13124 4203760 YP_695854.1 CDS CPF_1409 NC_008261.1 1586536 1587918 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1586536..1587918) Clostridium perfringens ATCC 13124 4203256 YP_695855.1 CDS CPF_1410 NC_008261.1 1588092 1589198 R identified by similarity to GB:AAF72522.1; similarity to GB:BAD47679.1; MdsC protein complement(1588092..1589198) Clostridium perfringens ATCC 13124 4201439 YP_695856.1 CDS CPF_1411 NC_008261.1 1589200 1590111 R identified by similarity to GB:BAD50849.1; hypothetical protein complement(1589200..1590111) Clostridium perfringens ATCC 13124 4201354 YP_695857.1 CDS CPF_1412 NC_008261.1 1590375 1592981 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P 1590375..1592981 Clostridium perfringens ATCC 13124 4201232 YP_695858.1 CDS spoVB NC_008261.1 1593026 1594642 R identified by similarity to SP:Q00758; match to protein family HMM PF01943; stage V sporulation protein B complement(1593026..1594642) Clostridium perfringens ATCC 13124 4203721 YP_695859.1 CDS CPF_1414 NC_008261.1 1594664 1595638 R identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(1594664..1595638) Clostridium perfringens ATCC 13124 4202123 YP_695860.1 CDS CPF_1415 NC_008261.1 1595698 1596894 R identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase complement(1595698..1596894) Clostridium perfringens ATCC 13124 4202577 YP_695861.1 CDS CPF_1416 NC_008261.1 1597100 1599094 R identified by similarity to SP:Q53727; match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(1597100..1599094) Clostridium perfringens ATCC 13124 4202844 YP_695862.1 CDS CPF_1417 NC_008261.1 1599247 1600719 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1599247..1600719 Clostridium perfringens ATCC 13124 4202590 YP_695863.1 CDS CPF_1418 NC_008261.1 1600773 1600949 R hypothetical protein complement(1600773..1600949) Clostridium perfringens ATCC 13124 4202277 YP_695864.1 CDS CPF_1419 NC_008261.1 1600979 1601314 R hypothetical protein complement(1600979..1601314) Clostridium perfringens ATCC 13124 4202283 YP_695865.1 CDS fur-3 NC_008261.1 1601933 1602352 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1601933..1602352 Clostridium perfringens ATCC 13124 4201976 YP_695866.1 CDS CPF_1421 NC_008261.1 1602430 1603827 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1602430..1603827) Clostridium perfringens ATCC 13124 4202203 YP_695867.1 CDS CPF_1422 NC_008261.1 1604016 1605326 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; uracil-xanthine permease complement(1604016..1605326) Clostridium perfringens ATCC 13124 4202712 YP_695868.1 CDS CPF_1423 NC_008261.1 1605611 1606021 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase complement(1605611..1606021) Clostridium perfringens ATCC 13124 4201599 YP_695869.1 CDS CPF_1424 NC_008261.1 1606212 1606967 R identified by similarity to SP:P49938; match to protein family HMM PF00005; iron(III) ABC transporter ATP-binding protein complement(1606212..1606967) Clostridium perfringens ATCC 13124 4202755 YP_695870.1 CDS CPF_1425 NC_008261.1 1606973 1607980 R identified by similarity to SP:Q56992; match to protein family HMM PF01032; iron(III) ABC transporter permease complement(1606973..1607980) Clostridium perfringens ATCC 13124 4201356 YP_695871.1 CDS CPF_1426 NC_008261.1 1608068 1609066 R identified by match to protein family HMM PF01497; iron(III) ABC transporter iron(III)-binding protein complement(1608068..1609066) Clostridium perfringens ATCC 13124 4201247 YP_695872.1 CDS cobK NC_008261.1 1609079 1609843 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(1609079..1609843) Clostridium perfringens ATCC 13124 4202252 YP_695873.1 CDS cobJ NC_008261.1 1609862 1610584 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase complement(1609862..1610584) Clostridium perfringens ATCC 13124 4203468 YP_695874.1 CDS cbiG NC_008261.1 1610739 1611737 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(1610739..1611737) Clostridium perfringens ATCC 13124 4200993 YP_695875.1 CDS cobM NC_008261.1 1611740 1612495 R identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(1611740..1612495) Clostridium perfringens ATCC 13124 4201207 YP_695876.1 CDS cobI NC_008261.1 1612546 1613208 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(1612546..1613208) Clostridium perfringens ATCC 13124 4201190 YP_695877.1 CDS cbiT NC_008261.1 1613208 1613801 R identified by match to protein family HMM PF05175; match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase subunit CbiT complement(1613208..1613801) Clostridium perfringens ATCC 13124 4203476 YP_695878.1 CDS cbiE NC_008261.1 1613821 1614432 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6y C5,15-methyltransferase (decarboxylating) complement(1613821..1614432) Clostridium perfringens ATCC 13124 4202750 YP_695879.1 CDS cbiD NC_008261.1 1614460 1615557 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(1614460..1615557) Clostridium perfringens ATCC 13124 4203789 YP_695880.1 CDS cbiC NC_008261.1 1615575 1616204 R catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase complement(1615575..1616204) Clostridium perfringens ATCC 13124 4201029 YP_695881.1 CDS cbiK NC_008261.1 1616204 1617046 R identified by similarity to SP:Q05592; match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase complement(1616204..1617046) Clostridium perfringens ATCC 13124 4201299 YP_695882.1 CDS CPF_1437 NC_008261.1 1617566 1618798 D identified by match to protein family HMM PF06725; hypothetical protein 1617566..1618798 Clostridium perfringens ATCC 13124 4203677 YP_695883.1 CDS CPF_1438 NC_008261.1 1618818 1619126 R hypothetical protein complement(1618818..1619126) Clostridium perfringens ATCC 13124 4201946 YP_695884.1 CDS entD NC_008261.1 1619394 1622543 R identified by match to protein family HMM PF00018; match to protein family HMM PF01832; match to protein family HMM PF06347; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein complement(1619394..1622543) Clostridium perfringens ATCC 13124 4201944 YP_695885.1 CDS CPF_1440 NC_008261.1 1622926 1623927 R identified by similarity to PIR:F97215; hypothetical protein complement(1622926..1623927) Clostridium perfringens ATCC 13124 4203912 YP_695886.1 CDS CPF_1441 NC_008261.1 1623961 1624653 R hypothetical protein complement(1623961..1624653) Clostridium perfringens ATCC 13124 4201437 YP_695887.1 CDS CPF_1442 NC_008261.1 1625168 1628173 R identified by similarity to SP:P26831; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07555; hyaluronidase complement(1625168..1628173) Clostridium perfringens ATCC 13124 4202790 YP_695888.1 CDS CPF_1443 NC_008261.1 1628283 1628381 R hypothetical protein complement(1628283..1628381) Clostridium perfringens ATCC 13124 4203501 YP_695889.1 CDS sodF NC_008261.1 1629829 1630512 R identified by similarity to SP:P28764; match to protein family HMM PF00081; match to protein family HMM PF02777; Mn/Fe superoxide dismutase complement(1629829..1630512) Clostridium perfringens ATCC 13124 4203100 YP_695890.1 CDS CPF_1447 NC_008261.1 1630574 1631185 R hypothetical protein complement(1630574..1631185) Clostridium perfringens ATCC 13124 4202396 YP_695891.1 CDS CPF_1448 NC_008261.1 1631495 1632943 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1631495..1632943 Clostridium perfringens ATCC 13124 4203690 YP_695892.1 CDS CPF_1449 NC_008261.1 1633003 1633167 R hypothetical protein complement(1633003..1633167) Clostridium perfringens ATCC 13124 4203076 YP_695893.1 CDS mgtE NC_008261.1 1633198 1634535 R identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter complement(1633198..1634535) Clostridium perfringens ATCC 13124 4203448 YP_695894.1 CDS CPF_1451 NC_008261.1 1635096 1635869 R identified by match to protein family HMM PF02698; hypothetical protein complement(1635096..1635869) Clostridium perfringens ATCC 13124 4201077 YP_695895.1 CDS CPF_1452 NC_008261.1 1636132 1636341 D identified by similarity to SP:P51777; similarity to SP:Q45098; match to protein family HMM PF00313; cold shock protein 1636132..1636341 Clostridium perfringens ATCC 13124 4200943 YP_695896.1 CDS CPF_1453 NC_008261.1 1636494 1636700 R identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein complement(1636494..1636700) Clostridium perfringens ATCC 13124 4202061 YP_695897.1 CDS CPF_1454 NC_008261.1 1636747 1637217 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(1636747..1637217) Clostridium perfringens ATCC 13124 4202126 YP_695898.1 CDS CPF_1455 NC_008261.1 1637336 1638307 R identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; oxidoreductase complement(1637336..1638307) Clostridium perfringens ATCC 13124 4203411 YP_695899.1 CDS CPF_1456 NC_008261.1 1638497 1641052 R identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; hypothetical protein complement(1638497..1641052) Clostridium perfringens ATCC 13124 4202587 YP_695900.2 CDS CPF_1457 NC_008261.1 1641627 1642595 R identified by similarity to GB:AAK15004.1; hypothetical protein complement(1641627..1642595) Clostridium perfringens ATCC 13124 4201967 YP_695901.1 CDS CPF_1458 NC_008261.1 1642704 1643195 R hypothetical protein complement(1642704..1643195) Clostridium perfringens ATCC 13124 4202829 YP_695902.1 CDS CPF_1459 NC_008261.1 1643416 1644609 R hypothetical protein complement(1643416..1644609) Clostridium perfringens ATCC 13124 4201677 YP_695903.1 CDS CPF_1460 NC_008261.1 1644619 1645602 R hypothetical protein complement(1644619..1645602) Clostridium perfringens ATCC 13124 4202544 YP_695904.1 CDS CPF_1461 NC_008261.1 1645992 1646714 R identified by match to protein family HMM PF06539; hypothetical protein complement(1645992..1646714) Clostridium perfringens ATCC 13124 4202321 YP_695905.1 CDS CPF_1462 NC_008261.1 1646894 1647232 R hypothetical protein complement(1646894..1647232) Clostridium perfringens ATCC 13124 4203526 YP_695906.1 CDS gltA NC_008261.1 1647256 1648662 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(1647256..1648662) Clostridium perfringens ATCC 13124 4201368 YP_695907.1 CDS CPF_1464 NC_008261.1 1648655 1649554 R identified by match to protein family HMM PF00175; ferredoxin-NADP reductase complement(1648655..1649554) Clostridium perfringens ATCC 13124 4203585 YP_695908.1 CDS adh1 NC_008261.1 1649726 1650892 R identified by similarity to SP:P13604; match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase complement(1649726..1650892) Clostridium perfringens ATCC 13124 4202420 YP_695909.1 CDS CPF_1466 NC_008261.1 1651004 1652455 R identified by similarity to SP:P37966; lipoprotein complement(1651004..1652455) Clostridium perfringens ATCC 13124 4203283 YP_695910.1 CDS CPF_1467 NC_008261.1 1652905 1655748 D identified by match to protein family HMM PF00018; enterotoxin 1652905..1655748 Clostridium perfringens ATCC 13124 4202639 YP_695911.1 CDS CPF_1468 NC_008261.1 1656030 1656944 R identified by similarity to SP:P50191; hypothetical protein complement(1656030..1656944) Clostridium perfringens ATCC 13124 4203514 YP_695912.1 CDS CPF_1469 NC_008261.1 1657242 1657862 R identified by match to protein family HMM PF07553; hypothetical protein complement(1657242..1657862) Clostridium perfringens ATCC 13124 4201235 YP_695913.1 CDS CPF_1470 NC_008261.1 1658115 1658735 R hypothetical protein complement(1658115..1658735) Clostridium perfringens ATCC 13124 4201737 YP_695914.1 CDS greA NC_008261.1 1659824 1660288 D identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 1659824..1660288 Clostridium perfringens ATCC 13124 4202866 YP_695915.1 CDS CPF_1472 NC_008261.1 1660597 1665363 R identified by similarity to GB:AAM55479.1; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF07554; alpha-N-acetylgalactosaminidase complement(1660597..1665363) Clostridium perfringens ATCC 13124 4203492 YP_695916.1 CDS CPF_1473 NC_008261.1 1665622 1667385 D hypothetical protein 1665622..1667385 Clostridium perfringens ATCC 13124 4202143 YP_695917.1 CDS lacZ NC_008261.1 1667508 1671575 R identified by similarity to SP:P26257; match to protein family HMM PF00404; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF07532; beta-galactosidase complement(1667508..1671575) Clostridium perfringens ATCC 13124 4201238 YP_695918.1 CDS CPF_1475 NC_008261.1 1671824 1673158 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase complement(1671824..1673158) Clostridium perfringens ATCC 13124 4203700 YP_695919.1 CDS CPF_1476 NC_008261.1 1673307 1675013 R identified by similarity to SP:P39761; match to protein family HMM PF01979; adenine deaminase complement(1673307..1675013) Clostridium perfringens ATCC 13124 4202397 YP_695920.1 CDS CPF_1477 NC_008261.1 1675029 1676075 R identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(1675029..1676075) Clostridium perfringens ATCC 13124 4202021 YP_695921.1 CDS CPF_1478 NC_008261.1 1676115 1677146 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1676115..1677146) Clostridium perfringens ATCC 13124 4201866 YP_695922.1 CDS CPF_1479 NC_008261.1 1677182 1677964 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1677182..1677964) Clostridium perfringens ATCC 13124 4201314 YP_695923.1 CDS CPF_1480 NC_008261.1 1677966 1678796 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1677966..1678796) Clostridium perfringens ATCC 13124 4202193 YP_695924.1 CDS CPF_1481 NC_008261.1 1679184 1680332 R identified by similarity to GB:BAB80980.1; hypothetical protein complement(1679184..1680332) Clostridium perfringens ATCC 13124 4202532 YP_695925.1 CDS CPF_1482 NC_008261.1 1680531 1681496 R identified by match to protein family HMM PF01207; dihydrouridine synthase complement(1680531..1681496) Clostridium perfringens ATCC 13124 4203241 YP_695926.2 CDS CPF_1483 NC_008261.1 1681600 1682970 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1681600..1682970) Clostridium perfringens ATCC 13124 4202266 YP_695927.1 CDS CPF_1484 NC_008261.1 1683323 1683664 R identified by similarity to GB:CAA66892.1; hypothetical protein complement(1683323..1683664) Clostridium perfringens ATCC 13124 4202581 YP_695928.1 CDS CPF_1485 NC_008261.1 1683676 1685592 R identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter complement(1683676..1685592) Clostridium perfringens ATCC 13124 4202565 YP_695929.1 CDS CPF_1486 NC_008261.1 1685589 1685825 R hypothetical protein complement(1685589..1685825) Clostridium perfringens ATCC 13124 4201547 YP_695930.1 CDS CPF_1487 NC_008261.1 1686237 1689755 R identified by similarity to SP:P26831; match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF07555; match to protein family HMM TIGR01167; hyaluronoglucosaminidase complement(1686237..1689755) Clostridium perfringens ATCC 13124 4201001 YP_695931.1 CDS CPF_1488 NC_008261.1 1689987 1690139 R hypothetical protein complement(1689987..1690139) Clostridium perfringens ATCC 13124 4202259 YP_695932.1 CDS CPF_1489 NC_008261.1 1690407 1695470 R identified by match to protein family HMM PF00754; match to protein family HMM PF07554; F5/8 type C domain-containing protein complement(1690407..1695470) Clostridium perfringens ATCC 13124 4202692 YP_695933.1 CDS CPF_1490 NC_008261.1 1695920 1697308 R identified by similarity to SP:P23054; match to protein family HMM PF07690; tetracycline resistance protein complement(1695920..1697308) Clostridium perfringens ATCC 13124 4202793 YP_695934.1 CDS CPF_1491 NC_008261.1 1697728 1698477 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1697728..1698477 Clostridium perfringens ATCC 13124 4201842 YP_695935.1 CDS CPF_1492 NC_008261.1 1698591 1699772 R identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter complement(1698591..1699772) Clostridium perfringens ATCC 13124 4201486 YP_695936.1 CDS CPF_1493 NC_008261.1 1700151 1702049 R identified by match to protein family HMM PF05976; hypothetical protein complement(1700151..1702049) Clostridium perfringens ATCC 13124 4201102 YP_695937.1 CDS CPF_1494 NC_008261.1 1702097 1702522 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1702097..1702522) Clostridium perfringens ATCC 13124 4202372 YP_695938.1 CDS CPF_1495 NC_008261.1 1702642 1703739 R identified by match to protein family HMM PF03572; S41 family peptidase complement(1702642..1703739) Clostridium perfringens ATCC 13124 4202248 YP_695939.1 CDS CPF_1496 NC_008261.1 1704071 1704523 D identified by match to protein family HMM PF06496; hypothetical protein 1704071..1704523 Clostridium perfringens ATCC 13124 4202667 YP_695940.1 CDS CPF_1497 NC_008261.1 1704972 1707809 R identified by match to protein family HMM PF02518; ATPase complement(1704972..1707809) Clostridium perfringens ATCC 13124 4201381 YP_695941.1 CDS xpt NC_008261.1 1709391 1709969 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(1709391..1709969) Clostridium perfringens ATCC 13124 4202594 YP_695942.1 CDS CPF_1499 NC_008261.1 1710142 1711131 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1710142..1711131 Clostridium perfringens ATCC 13124 4202633 YP_695943.1 CDS CPF_1500 NC_008261.1 1711478 1712086 R lipoprotein complement(1711478..1712086) Clostridium perfringens ATCC 13124 4200989 YP_695944.1 CDS smpB NC_008261.1 1712535 1713005 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1712535..1713005) Clostridium perfringens ATCC 13124 4203890 YP_695945.1 CDS rnr NC_008261.1 1713602 1715857 R identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R complement(1713602..1715857) Clostridium perfringens ATCC 13124 4202762 YP_695946.1 CDS secG NC_008261.1 1716146 1716376 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(1716146..1716376) Clostridium perfringens ATCC 13124 4202759 YP_695947.1 CDS CPF_1504 NC_008261.1 1716567 1717124 R identified by similarity to GB:CAB12841.1; tryptophan transport protein complement(1716567..1717124) Clostridium perfringens ATCC 13124 4202904 YP_695948.1 CDS eno NC_008261.1 1718717 1720012 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1718717..1720012) Clostridium perfringens ATCC 13124 4203141 YP_695949.1 CDS CPF_1506 NC_008261.1 1720392 1720532 R hypothetical protein complement(1720392..1720532) Clostridium perfringens ATCC 13124 4201450 YP_695950.1 CDS CPF_1507 NC_008261.1 1720740 1722197 R identified by match to protein family HMM PF00324; glutamate:gamma-aminobutyrate antiporter family protein complement(1720740..1722197) Clostridium perfringens ATCC 13124 4202296 YP_695951.1 CDS gpmI NC_008261.1 1722763 1724301 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(1722763..1724301) Clostridium perfringens ATCC 13124 4203015 YP_695952.1 CDS tpiA NC_008261.1 1724426 1725172 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1724426..1725172) Clostridium perfringens ATCC 13124 4201860 YP_695953.1 CDS pgk NC_008261.1 1725416 1726609 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1725416..1726609) Clostridium perfringens ATCC 13124 4203510 YP_695954.1 CDS gap NC_008261.1 1726753 1727751 R identified by similarity to SP:Q59309; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1726753..1727751) Clostridium perfringens ATCC 13124 4202942 YP_695955.1 CDS CPF_1512 NC_008261.1 1727842 1728876 R identified by match to protein family HMM PF04198; sugar-binding domain-containing protein complement(1727842..1728876) Clostridium perfringens ATCC 13124 4202742 YP_695956.1 CDS rpoN NC_008261.1 1729103 1730488 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1729103..1730488) Clostridium perfringens ATCC 13124 4202800 YP_695957.1 CDS CPF_1514 NC_008261.1 1730739 1731506 R identified by similarity to GB:AAM23666.1; hypothetical protein complement(1730739..1731506) Clostridium perfringens ATCC 13124 4201559 YP_695958.1 CDS CPF_1515 NC_008261.1 1731487 1732002 R identified by similarity to GB:AAO35342.1; hypothetical protein complement(1731487..1732002) Clostridium perfringens ATCC 13124 4203434 YP_695959.1 CDS CPF_1516 NC_008261.1 1732604 1733674 R identified by match to protein family HMM PF02608; Bmp family lipoprotein complement(1732604..1733674) Clostridium perfringens ATCC 13124 4201052 YP_695960.1 CDS CPF_1517 NC_008261.1 1733765 1734604 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein complement(1733765..1734604) Clostridium perfringens ATCC 13124 4202757 YP_695961.1 CDS CPF_1518 NC_008261.1 1734619 1735080 R identified by match to protein family HMM PF00588; RNA methyltransferase complement(1734619..1735080) Clostridium perfringens ATCC 13124 4203267 YP_695962.1 CDS CPF_1519 NC_008261.1 1735169 1736002 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase complement(1735169..1736002) Clostridium perfringens ATCC 13124 4202161 YP_695963.1 CDS CPF_1520 NC_008261.1 1736160 1737722 R identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A complement(1736160..1737722) Clostridium perfringens ATCC 13124 4201182 YP_695964.1 CDS CPF_1521 NC_008261.1 1737887 1738852 R identified by match to protein family HMM PF01183; glycosyl hydrolase complement(1737887..1738852) Clostridium perfringens ATCC 13124 4203101 YP_695965.1 CDS ddl NC_008261.1 1738926 1739831 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(1738926..1739831) Clostridium perfringens ATCC 13124 4201484 YP_695966.1 CDS CPF_1523 NC_008261.1 1739951 1742314 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(1739951..1742314) Clostridium perfringens ATCC 13124 4202136 YP_695967.1 CDS CPF_1524 NC_008261.1 1742516 1743379 D identified by match to protein family HMM PF00892; hypothetical protein 1742516..1743379 Clostridium perfringens ATCC 13124 4201161 YP_695968.1 CDS nth NC_008261.1 1743409 1744038 R identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1743409..1744038) Clostridium perfringens ATCC 13124 4203704 YP_695969.1 CDS plsD NC_008261.1 1744050 1744754 R identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553; sn-glycerol-3-phosphate acyltransferase complement(1744050..1744754) Clostridium perfringens ATCC 13124 4202926 YP_695970.1 CDS CPF_1527 NC_008261.1 1744792 1745784 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(1744792..1745784) Clostridium perfringens ATCC 13124 4202393 YP_695971.1 CDS cysE NC_008261.1 1745929 1746438 R identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase complement(1745929..1746438) Clostridium perfringens ATCC 13124 4203097 YP_695972.1 CDS cysK NC_008261.1 1746457 1747359 R identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(1746457..1747359) Clostridium perfringens ATCC 13124 4202249 YP_695973.1 CDS CPF_1530 NC_008261.1 1747698 1748969 R identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239; hypothetical protein complement(1747698..1748969) Clostridium perfringens ATCC 13124 4203249 YP_695974.1 CDS CPF_1531 NC_008261.1 1749309 1750097 D identified by similarity to SP:P10344; match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 1749309..1750097 Clostridium perfringens ATCC 13124 4203614 YP_695975.1 CDS CPF_1532 NC_008261.1 1750111 1750752 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1750111..1750752 Clostridium perfringens ATCC 13124 4202114 YP_695976.1 CDS CPF_1533 NC_008261.1 1750764 1751456 D identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1750764..1751456 Clostridium perfringens ATCC 13124 4203138 YP_695977.1 CDS CPF_1534 NC_008261.1 1751625 1752305 R hypothetical protein complement(1751625..1752305) Clostridium perfringens ATCC 13124 4201713 YP_695978.1 CDS CPF_1535 NC_008261.1 1752378 1753274 R similar to YegS from E. coli; lipid kinase complement(1752378..1753274) Clostridium perfringens ATCC 13124 4203227 YP_695979.1 CDS pssA NC_008261.1 1753574 1754095 D identified by similarity to SP:P39823; match to protein family HMM PF01066; CDP-diacylglycerol--serine O-phosphatidyltransferase 1753574..1754095 Clostridium perfringens ATCC 13124 4202613 YP_695980.1 CDS CPF_1537 NC_008261.1 1754142 1754492 R identified by similarity to GB:AAO34984.1; hypothetical protein complement(1754142..1754492) Clostridium perfringens ATCC 13124 4202298 YP_695981.1 CDS CPF_1538 NC_008261.1 1754514 1755050 R identified by match to protein family HMM PF02915; rubrerythrin complement(1754514..1755050) Clostridium perfringens ATCC 13124 4202088 YP_695982.1 CDS spoVR NC_008261.1 1755102 1756451 R identified by similarity to SP:P37875; match to protein family HMM PF04293; stage V sporulation protein R complement(1755102..1756451) Clostridium perfringens ATCC 13124 4201699 YP_695983.1 CDS yhbH NC_008261.1 1756478 1757656 R identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877; hypothetical protein complement(1756478..1757656) Clostridium perfringens ATCC 13124 4202573 YP_695984.1 CDS prkA NC_008261.1 1757660 1759582 R identified by similarity to PIR:JC4602; match to protein family HMM PF06798; serine protein kinase complement(1757660..1759582) Clostridium perfringens ATCC 13124 4201315 YP_695985.1 CDS recQ NC_008261.1 1759672 1761450 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ complement(1759672..1761450) Clostridium perfringens ATCC 13124 4203020 YP_695986.1 CDS thiE NC_008261.1 1761681 1762304 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(1761681..1762304) Clostridium perfringens ATCC 13124 4202016 YP_695987.1 CDS thiM NC_008261.1 1762297 1763094 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(1762297..1763094) Clostridium perfringens ATCC 13124 4201531 YP_695988.1 CDS thiD NC_008261.1 1763106 1763900 R identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(1763106..1763900) Clostridium perfringens ATCC 13124 4203560 YP_695989.1 CDS CPF_1546 NC_008261.1 1764207 1765046 D identified by match to protein family HMM PF01734; patatin family phospholipase 1764207..1765046 Clostridium perfringens ATCC 13124 4203186 YP_695990.1 CDS CPF_1547 NC_008261.1 1765164 1766177 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(1765164..1766177) Clostridium perfringens ATCC 13124 4201634 YP_695991.1 CDS CPF_1548 NC_008261.1 1766395 1767459 D identified by similarity to SP:P23905; match to protein family HMM PF00532; galactoside ABC transporter galactoside-binding protein 1766395..1767459 Clostridium perfringens ATCC 13124 4202288 YP_695992.1 CDS mglA NC_008261.1 1767534 1769081 D with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1767534..1769081 Clostridium perfringens ATCC 13124 4202214 YP_695993.1 CDS mglC NC_008261.1 1769053 1770081 D ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 1769053..1770081 Clostridium perfringens ATCC 13124 4202621 YP_695994.1 CDS CPF_1551 NC_008261.1 1770121 1771143 R identified by similarity to SP:P05149; match to protein family HMM PF01263; aldose 1-epimerase complement(1770121..1771143) Clostridium perfringens ATCC 13124 4203837 YP_695995.1 CDS galK NC_008261.1 1771369 1772532 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 1771369..1772532 Clostridium perfringens ATCC 13124 4201933 YP_695996.1 CDS galT NC_008261.1 1772655 1774151 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1772655..1774151 Clostridium perfringens ATCC 13124 4202529 YP_695997.1 CDS CPF_1554 NC_008261.1 1774342 1775997 R identified by match to protein family HMM PF00485; threonyl-tRNA synthetase/uridine kinase complement(1774342..1775997) Clostridium perfringens ATCC 13124 4203137 YP_695998.1 CDS CPF_1555 NC_008261.1 1776128 1776826 D identified by similarity to PIR:E96982; match to protein family HMM PF04239; hypothetical protein 1776128..1776826 Clostridium perfringens ATCC 13124 4202279 YP_695999.1 CDS CPF_1556 NC_008261.1 1776823 1777257 D identified by similarity to PIR:D96982; hypothetical protein 1776823..1777257 Clostridium perfringens ATCC 13124 4201198 YP_696000.1 CDS fba NC_008261.1 1777354 1778220 D identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 1777354..1778220 Clostridium perfringens ATCC 13124 4200986 YP_696001.1 CDS CPF_1558 NC_008261.1 1778267 1779310 R identified by similarity to PIR:A96980; hypothetical protein complement(1778267..1779310) Clostridium perfringens ATCC 13124 4202597 YP_696002.1 CDS CPF_1559 NC_008261.1 1779450 1780013 D identified by match to protein family HMM PF01928; adenylate cyclase 1779450..1780013 Clostridium perfringens ATCC 13124 4201838 YP_696003.1 CDS CPF_1560 NC_008261.1 1780024 1780218 R hypothetical protein complement(1780024..1780218) Clostridium perfringens ATCC 13124 4201191 YP_696004.1 CDS CPF_1561 NC_008261.1 1780263 1780880 R hypothetical protein complement(1780263..1780880) Clostridium perfringens ATCC 13124 4203384 YP_696005.1 CDS CPF_1562 NC_008261.1 1781006 1782667 R identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF07653; NlpC/P60 family protein complement(1781006..1782667) Clostridium perfringens ATCC 13124 4203069 YP_696006.1 CDS CPF_1563 NC_008261.1 1782833 1783201 R hypothetical protein complement(1782833..1783201) Clostridium perfringens ATCC 13124 4203931 YP_696007.1 CDS CPF_1564 NC_008261.1 1783389 1783775 D hypothetical protein 1783389..1783775 Clostridium perfringens ATCC 13124 4203557 YP_696008.1 CDS CPF_1565 NC_008261.1 1783902 1784054 R hypothetical protein complement(1783902..1784054) Clostridium perfringens ATCC 13124 4203936 YP_696009.1 CDS CPF_1566 NC_008261.1 1784095 1784580 R identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; ybaK/ebsC protein complement(1784095..1784580) Clostridium perfringens ATCC 13124 4202158 YP_696010.1 CDS CPF_1567 NC_008261.1 1784747 1785049 R identified by similarity to GB:AAR27352.1; hypothetical protein complement(1784747..1785049) Clostridium perfringens ATCC 13124 4203326 YP_696011.1 CDS CPF_1568 NC_008261.1 1785241 1786269 R identified by match to protein family HMM PF01183; glycosyl hydrolase complement(1785241..1786269) Clostridium perfringens ATCC 13124 4201671 YP_696012.1 CDS CPF_1569 NC_008261.1 1786323 1786805 R hypothetical protein complement(1786323..1786805) Clostridium perfringens ATCC 13124 4201228 YP_696013.1 CDS CPF_1570 NC_008261.1 1786826 1787059 R identified by similarity to PIR:H97036; hypothetical protein complement(1786826..1787059) Clostridium perfringens ATCC 13124 4203735 YP_696014.1 CDS CPF_1571 NC_008261.1 1787141 1787326 R hypothetical protein complement(1787141..1787326) Clostridium perfringens ATCC 13124 4203354 YP_696015.1 CDS CPF_1572 NC_008261.1 1787345 1789843 R identified by similarity to GB:AAL96788.1; hypothetical protein complement(1787345..1789843) Clostridium perfringens ATCC 13124 4202895 YP_696016.1 CDS CPF_1573 NC_008261.1 1789859 1791739 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1789859..1791739) Clostridium perfringens ATCC 13124 4201034 YP_696017.1 CDS CPF_1574 NC_008261.1 1791790 1794849 R identified by match to protein family HMM PF01551; match to protein family HMM TIGR01665; phage structural protein complement(1791790..1794849) Clostridium perfringens ATCC 13124 4201349 YP_696018.1 CDS CPF_1575 NC_008261.1 1794854 1795564 R identified by match to protein family HMM TIGR01633; phage tail component complement(1794854..1795564) Clostridium perfringens ATCC 13124 4200954 YP_696019.1 CDS CPF_1576 NC_008261.1 1795557 1798811 R identified by match to protein family HMM TIGR01760; TP901 family phage tail tape measure protein complement(1795557..1798811) Clostridium perfringens ATCC 13124 4201424 YP_696020.1 CDS CPF_1577 NC_008261.1 1798847 1799200 R identified by similarity to GB:AAF33581.1; hypothetical protein complement(1798847..1799200) Clostridium perfringens ATCC 13124 4202922 YP_696021.1 CDS CPF_1578 NC_008261.1 1799362 1799679 R identified by similarity to GB:AAL96782.1; hypothetical protein complement(1799362..1799679) Clostridium perfringens ATCC 13124 4201253 YP_696022.1 CDS CPF_1579 NC_008261.1 1799682 1800284 R identified by match to protein family HMM TIGR01603; phi13 family phage major tail protein complement(1799682..1800284) Clostridium perfringens ATCC 13124 4202531 YP_696023.1 CDS CPF_1580 NC_008261.1 1800301 1800648 R identified by similarity to GB:AAL96780.1; hypothetical protein complement(1800301..1800648) Clostridium perfringens ATCC 13124 4201550 YP_696024.1 CDS CPF_1581 NC_008261.1 1800657 1801085 R identified by match to protein family HMM TIGR01725; HK97 family phage protein complement(1800657..1801085) Clostridium perfringens ATCC 13124 4202862 YP_696025.1 CDS CPF_1582 NC_008261.1 1801094 1801423 R identified by match to protein family HMM TIGR01563; phage head-tail adaptor complement(1801094..1801423) Clostridium perfringens ATCC 13124 4203080 YP_696026.1 CDS CPF_1583 NC_008261.1 1801416 1801694 R identified by match to protein family HMM TIGR01560; QlrG family phage protein complement(1801416..1801694) Clostridium perfringens ATCC 13124 4202029 YP_696027.1 CDS CPF_1584 NC_008261.1 1801706 1802890 R identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; HK97 family phage major capsid protein complement(1801706..1802890) Clostridium perfringens ATCC 13124 4203065 YP_696028.1 CDS CPF_1585 NC_008261.1 1802931 1803536 R identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543; HK97 family phage prohead protease complement(1802931..1803536) Clostridium perfringens ATCC 13124 4203285 YP_696029.1 CDS CPF_1586 NC_008261.1 1803526 1804773 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family phage portal protein complement(1803526..1804773) Clostridium perfringens ATCC 13124 4202382 YP_696030.1 CDS CPF_1587 NC_008261.1 1804774 1806513 R identified by match to protein family HMM PF03354; phage terminase, large subunit complement(1804774..1806513) Clostridium perfringens ATCC 13124 4201712 YP_696031.1 CDS CPF_1588 NC_008261.1 1806506 1807018 R identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase small subunit complement(1806506..1807018) Clostridium perfringens ATCC 13124 4201600 YP_696032.1 CDS CPF_1589 NC_008261.1 1807521 1808342 R hypothetical protein complement(1807521..1808342) Clostridium perfringens ATCC 13124 4201569 YP_696033.1 CDS CPF_1590 NC_008261.1 1808517 1809065 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1808517..1809065) Clostridium perfringens ATCC 13124 4203192 YP_696034.1 CDS CPF_1591 NC_008261.1 1809160 1809513 R hypothetical protein complement(1809160..1809513) Clostridium perfringens ATCC 13124 4202289 YP_696035.1 CDS CPF_1592 NC_008261.1 1809572 1809778 R hypothetical protein complement(1809572..1809778) Clostridium perfringens ATCC 13124 4202566 YP_696036.1 CDS CPF_1593 NC_008261.1 1809920 1810381 R DNA-binding protein complement(1809920..1810381) Clostridium perfringens ATCC 13124 4203756 YP_696037.1 CDS CPF_1594 NC_008261.1 1810518 1810709 R hypothetical protein complement(1810518..1810709) Clostridium perfringens ATCC 13124 4203816 YP_696038.1 CDS CPF_1595 NC_008261.1 1810917 1811306 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand DNA-binding protein complement(1810917..1811306) Clostridium perfringens ATCC 13124 4202215 YP_696039.1 CDS CPF_1596 NC_008261.1 1811321 1811467 R hypothetical protein complement(1811321..1811467) Clostridium perfringens ATCC 13124 4202284 YP_696040.1 CDS dnaB NC_008261.1 1811479 1812762 R identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; replicative DNA helicase complement(1811479..1812762) Clostridium perfringens ATCC 13124 4203762 YP_696041.1 CDS CPF_1598 NC_008261.1 1812773 1813513 R identified by similarity to GB:AAL96804.1; match to protein family HMM TIGR02220; hypothetical protein complement(1812773..1813513) Clostridium perfringens ATCC 13124 4203793 YP_696042.1 CDS CPF_1599 NC_008261.1 1813541 1813684 R identified by similarity to GB:AAL96803.1; hypothetical protein complement(1813541..1813684) Clostridium perfringens ATCC 13124 4203695 YP_696043.1 CDS CPF_1600 NC_008261.1 1813702 1813881 R identified by similarity to GB:AAO35656.1; hypothetical protein complement(1813702..1813881) Clostridium perfringens ATCC 13124 4200965 YP_696044.1 CDS CPF_1601 NC_008261.1 1813907 1814137 R hypothetical protein complement(1813907..1814137) Clostridium perfringens ATCC 13124 4203309 YP_696045.1 CDS CPF_1602 NC_008261.1 1814143 1814640 R identified by similarity to GB:AAL80538.1; hypothetical protein complement(1814143..1814640) Clostridium perfringens ATCC 13124 4201820 YP_696046.1 CDS CPF_1603 NC_008261.1 1814690 1814878 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1814690..1814878) Clostridium perfringens ATCC 13124 4202893 YP_696047.1 CDS CPF_1604 NC_008261.1 1815028 1815372 D identified by match to protein family HMM PF01381; DNA-binding protein 1815028..1815372 Clostridium perfringens ATCC 13124 4201852 YP_696048.1 CDS CPF_1605 NC_008261.1 1815423 1817012 D identified by similarity to GB:AAO79115.1; hypothetical protein 1815423..1817012 Clostridium perfringens ATCC 13124 4202336 YP_696049.1 CDS CPF_1606 NC_008261.1 1817080 1817934 D identified by match to protein family HMM PF02086; adenine-specific DNA methyltransferase 1817080..1817934 Clostridium perfringens ATCC 13124 4202804 YP_696050.1 CDS CPF_1607 NC_008261.1 1818046 1818543 D identified by similarity to GB:AAO35652.1; match to protein family HMM PF06114; hypothetical protein 1818046..1818543 Clostridium perfringens ATCC 13124 4202479 YP_696051.1 CDS CPF_1608 NC_008261.1 1818556 1820064 D identified by match to protein family HMM PF00239; resolvase 1818556..1820064 Clostridium perfringens ATCC 13124 4202073 YP_696052.1 CDS CPF_1609 NC_008261.1 1820078 1820416 R identified by match to protein family HMM PF04073; prolyl-tRNA synthetase complement(1820078..1820416) Clostridium perfringens ATCC 13124 4203904 YP_696053.1 CDS CPF_1610 NC_008261.1 1820820 1821197 R identified by similarity to SP:P45491; lipoprotein complement(1820820..1821197) Clostridium perfringens ATCC 13124 4202754 YP_696054.1 CDS CPF_1611 NC_008261.1 1821385 1821534 R hypothetical protein complement(1821385..1821534) Clostridium perfringens ATCC 13124 4201773 YP_696055.1 CDS CPF_1612 NC_008261.1 1821673 1822233 R identified by similarity to SP:Q58794; hypothetical protein complement(1821673..1822233) Clostridium perfringens ATCC 13124 4202174 YP_696056.1 CDS rnz NC_008261.1 1822317 1823267 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1822317..1823267) Clostridium perfringens ATCC 13124 4203494 YP_696057.1 CDS CPF_1614 NC_008261.1 1823380 1827795 R identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754; glycosyl hydrolase complement(1823380..1827795) Clostridium perfringens ATCC 13124 4202588 YP_696058.1 CDS CPF_1615 NC_008261.1 1828029 1828655 D identified by match to protein family HMM PF02080; TrkA domain-containing protein 1828029..1828655 Clostridium perfringens ATCC 13124 4201271 YP_696059.1 CDS CPF_1616 NC_008261.1 1828707 1829459 R identified by similarity to SP:Q58828; hypothetical protein complement(1828707..1829459) Clostridium perfringens ATCC 13124 4203071 YP_696060.1 CDS CPF_1617 NC_008261.1 1829551 1830699 R identified by match to protein family HMM PF07907; hypothetical protein complement(1829551..1830699) Clostridium perfringens ATCC 13124 4203641 YP_696061.1 CDS CPF_1618 NC_008261.1 1830780 1835912 R identified by match to protein family HMM PF00746; match to protein family HMM PF01336; match to protein family HMM TIGR01167; OB-fold nucleic acid binding domain-containing protein complement(1830780..1835912) Clostridium perfringens ATCC 13124 4202972 YP_696062.1 CDS CPF_1619 NC_008261.1 1836149 1836652 R identified by match to protein family HMM PF00583; acetyltransferase complement(1836149..1836652) Clostridium perfringens ATCC 13124 4202112 YP_696063.1 CDS CPF_1620 NC_008261.1 1836961 1837740 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; HisJ family histidinol phosphate phosphatase 1836961..1837740 Clostridium perfringens ATCC 13124 4201150 YP_696064.1 CDS CPF_1621 NC_008261.1 1838091 1839404 D identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 1838091..1839404 Clostridium perfringens ATCC 13124 4201341 YP_696065.1 CDS CPF_1622 NC_008261.1 1839695 1840390 D identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 1839695..1840390 Clostridium perfringens ATCC 13124 4201682 YP_696066.1 CDS CPF_1623 NC_008261.1 1840499 1841575 D identified by match to protein family HMM PF00155; match to protein family HMM PF04864; aminotransferase 1840499..1841575 Clostridium perfringens ATCC 13124 4203639 YP_696067.1 CDS cax NC_008261.1 1841711 1842757 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846; calcium/proton exchanger complement(1841711..1842757) Clostridium perfringens ATCC 13124 4201798 YP_696068.1 CDS CPF_1625 NC_008261.1 1843198 1844493 R identified by match to protein family HMM PF01663; phosphodiesterase/nucleotide pyrophosphatase complement(1843198..1844493) Clostridium perfringens ATCC 13124 4203654 YP_696069.1 CDS CPF_1626 NC_008261.1 1844550 1844885 R hypothetical protein complement(1844550..1844885) Clostridium perfringens ATCC 13124 4201840 YP_696070.1 CDS CPF_1627 NC_008261.1 1845025 1845438 R identified by similarity to GB:AAO07569.1; hypothetical protein complement(1845025..1845438) Clostridium perfringens ATCC 13124 4202608 YP_696071.1 CDS CPF_1628 NC_008261.1 1845638 1846543 R identified by match to protein family HMM PF04018; hypothetical protein complement(1845638..1846543) Clostridium perfringens ATCC 13124 4202731 YP_696072.1 CDS CPF_1629 NC_008261.1 1846709 1847872 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; IS605 family transposase OrfB complement(1846709..1847872) Clostridium perfringens ATCC 13124 4203231 YP_696073.1 CDS CPF_1631 NC_008261.1 1848575 1849366 R identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase complement(1848575..1849366) Clostridium perfringens ATCC 13124 4203425 YP_696074.1 CDS CPF_1632 NC_008261.1 1849636 1849962 R identified by similarity to PIR:C96961; hypothetical protein complement(1849636..1849962) Clostridium perfringens ATCC 13124 4202045 YP_696075.1 CDS CPF_1634 NC_008261.1 1850448 1851389 D identified by similarity to GB:AAO36346.1; hypothetical protein 1850448..1851389 Clostridium perfringens ATCC 13124 4201178 YP_696076.1 CDS map NC_008261.1 1851427 1852296 R identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase complement(1851427..1852296) Clostridium perfringens ATCC 13124 4203899 YP_696077.1 CDS CPF_1636 NC_008261.1 1852644 1853240 R identified by similarity to PIR:B97000; hypothetical protein complement(1852644..1853240) Clostridium perfringens ATCC 13124 4202233 YP_696078.1 CDS CPF_1637 NC_008261.1 1853342 1854265 D identified by similarity to PIR:C97224; hypothetical protein 1853342..1854265 Clostridium perfringens ATCC 13124 4202287 YP_696079.1 CDS CPF_1638 NC_008261.1 1854405 1854974 R hypothetical protein complement(1854405..1854974) Clostridium perfringens ATCC 13124 4203535 YP_696080.1 CDS CPF_1639 NC_008261.1 1855060 1855176 R hypothetical protein complement(1855060..1855176) Clostridium perfringens ATCC 13124 4201621 YP_696081.1 CDS CPF_1641 NC_008261.1 1855228 1855389 D hypothetical protein 1855228..1855389 Clostridium perfringens ATCC 13124 4203622 YP_696082.1 CDS CPF_1640 NC_008261.1 1855339 1855554 R hypothetical protein complement(1855339..1855554) Clostridium perfringens ATCC 13124 4203437 YP_696083.1 CDS CPF_1642 NC_008261.1 1855590 1856072 R hypothetical protein complement(1855590..1856072) Clostridium perfringens ATCC 13124 4202572 YP_696084.1 CDS engB NC_008261.1 1856289 1856882 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1856289..1856882) Clostridium perfringens ATCC 13124 4201972 YP_696085.1 CDS lon NC_008261.1 1856882 1859212 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(1856882..1859212) Clostridium perfringens ATCC 13124 4201212 YP_696086.1 CDS lonB NC_008261.1 1859334 1861046 R identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902; ATP-dependent protease LonB complement(1859334..1861046) Clostridium perfringens ATCC 13124 4201241 YP_696087.1 CDS clpX NC_008261.1 1861157 1862464 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1861157..1862464) Clostridium perfringens ATCC 13124 4201971 YP_696088.1 CDS clpP NC_008261.1 1862504 1863088 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1862504..1863088) Clostridium perfringens ATCC 13124 4203731 YP_696089.1 CDS tig NC_008261.1 1863279 1864565 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1863279..1864565) Clostridium perfringens ATCC 13124 4202975 YP_696090.1 CDS CPF_1649 NC_008261.1 1864692 1865480 R identified by match to protein family HMM PF01261; AP endonuclease complement(1864692..1865480) Clostridium perfringens ATCC 13124 4201219 YP_696091.1 CDS CPF_1650 NC_008261.1 1865685 1867271 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 1865685..1867271 Clostridium perfringens ATCC 13124 4201627 YP_696092.1 CDS CPF_1651 NC_008261.1 1867310 1867582 R hypothetical protein complement(1867310..1867582) Clostridium perfringens ATCC 13124 4202696 YP_696093.1 CDS deoD NC_008261.1 1867767 1868474 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1867767..1868474 Clostridium perfringens ATCC 13124 4201939 YP_696094.1 CDS CPF_1653 NC_008261.1 1868529 1869803 R hypothetical protein complement(1868529..1869803) Clostridium perfringens ATCC 13124 4202769 YP_696095.1 CDS CPF_1654 NC_008261.1 1869814 1870158 R hypothetical protein complement(1869814..1870158) Clostridium perfringens ATCC 13124 4201370 YP_696096.1 CDS CPF_1655 NC_008261.1 1870342 1871250 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(1870342..1871250) Clostridium perfringens ATCC 13124 4201263 YP_696097.1 CDS CPF_1656 NC_008261.1 1871497 1874418 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase complement(1871497..1874418) Clostridium perfringens ATCC 13124 4202674 YP_696098.1 CDS CPF_1657 NC_008261.1 1874793 1875062 R hypothetical protein complement(1874793..1875062) Clostridium perfringens ATCC 13124 4203522 YP_696099.1 CDS CPF_1658 NC_008261.1 1875232 1876383 D identified by similarity to GB:AAO35894.1; hypothetical protein 1875232..1876383 Clostridium perfringens ATCC 13124 4203421 YP_696100.1 CDS CPF_1661 NC_008261.1 1877319 1877897 D identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613; flavoredoxin 1877319..1877897 Clostridium perfringens ATCC 13124 4202254 YP_696101.1 CDS CPF_1662 NC_008261.1 1878024 1879595 R identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein complement(1878024..1879595) Clostridium perfringens ATCC 13124 4203785 YP_696102.1 CDS CPF_1663 NC_008261.1 1879858 1881168 D identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; RnfABCDGE type electron transport complex subunit C 1879858..1881168 Clostridium perfringens ATCC 13124 4202571 YP_696103.1 CDS CPF_1664 NC_008261.1 1881182 1882162 D identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 1881182..1882162 Clostridium perfringens ATCC 13124 4203346 YP_696104.1 CDS CPF_1665 NC_008261.1 1882473 1882730 R identified by similarity to GB:CAH17248.1; match to protein family HMM PF07866; hypothetical protein complement(1882473..1882730) Clostridium perfringens ATCC 13124 4203808 YP_696105.1 CDS thiI NC_008261.1 1882859 1884016 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1882859..1884016) Clostridium perfringens ATCC 13124 4201576 YP_696106.1 CDS CPF_1667 NC_008261.1 1884013 1885158 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; class V aminotransferase complement(1884013..1885158) Clostridium perfringens ATCC 13124 4202172 YP_696107.1 CDS CPF_1668 NC_008261.1 1885332 1885769 R identified by similarity to SP:P21204; match to protein family HMM PF01842; hypothetical protein complement(1885332..1885769) Clostridium perfringens ATCC 13124 4203790 YP_696108.1 CDS CPF_1670 NC_008261.1 1888964 1889803 R identified by match to protein family HMM PF02574; homocysteine S-methyltransferase complement(1888964..1889803) Clostridium perfringens ATCC 13124 4203343 YP_696109.1 CDS CPF_1671 NC_008261.1 1890045 1890773 D identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1890045..1890773 Clostridium perfringens ATCC 13124 4201371 YP_696110.1 CDS CPF_1672 NC_008261.1 1890817 1892205 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(1890817..1892205) Clostridium perfringens ATCC 13124 4202100 YP_696111.1 CDS CPF_1673 NC_008261.1 1892512 1893168 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein complement(1892512..1893168) Clostridium perfringens ATCC 13124 4202342 YP_696112.1 CDS CPF_1674 NC_008261.1 1893491 1894243 D hypothetical protein 1893491..1894243 Clostridium perfringens ATCC 13124 4203688 YP_696113.1 CDS CPF_1675 NC_008261.1 1894448 1895425 D identified by match to protein family HMM PF03576; T4 family peptidase 1894448..1895425 Clostridium perfringens ATCC 13124 4203027 YP_696114.1 CDS CPF_1676 NC_008261.1 1895666 1895848 D identified by match to protein family HMM PF00269; small, acid-soluble spore protein 1895666..1895848 Clostridium perfringens ATCC 13124 4202348 YP_696115.1 CDS CPF_1677 NC_008261.1 1895896 1896336 R identified by similarity to GB:AAM24816.1; hypothetical protein complement(1895896..1896336) Clostridium perfringens ATCC 13124 4202941 YP_696116.1 CDS pcp NC_008261.1 1896336 1896977 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1896336..1896977) Clostridium perfringens ATCC 13124 4201764 YP_696117.1 CDS CPF_1679 NC_008261.1 1897013 1897942 R identified by match to protein family HMM PF06166; hypothetical protein complement(1897013..1897942) Clostridium perfringens ATCC 13124 4203648 YP_696118.2 CDS CPF_1680 NC_008261.1 1897955 1898635 R identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149; hypothetical protein complement(1897955..1898635) Clostridium perfringens ATCC 13124 4202966 YP_696119.1 CDS clpB NC_008261.1 1898873 1901473 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; clpB protein complement(1898873..1901473) Clostridium perfringens ATCC 13124 4202698 YP_696120.1 CDS CPF_1682 NC_008261.1 1901843 1903330 D identified by match to protein family HMM PF04607; hypothetical protein 1901843..1903330 Clostridium perfringens ATCC 13124 4203151 YP_696121.1 CDS cls NC_008261.1 1903410 1904840 D identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthase 1903410..1904840 Clostridium perfringens ATCC 13124 4203871 YP_696122.1 CDS CPF_1684 NC_008261.1 1905002 1906627 R identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02910; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(1905002..1906627) Clostridium perfringens ATCC 13124 4201501 YP_696123.1 CDS hemL NC_008261.1 1906828 1908105 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1906828..1908105) Clostridium perfringens ATCC 13124 4201829 YP_696124.1 CDS hemB NC_008261.1 1908168 1909133 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1908168..1909133) Clostridium perfringens ATCC 13124 4202556 YP_696125.1 CDS hemD NC_008261.1 1909190 1910668 R identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen-III methyltransferase/synthase complement(1909190..1910668) Clostridium perfringens ATCC 13124 4202350 YP_696126.1 CDS hemC NC_008261.1 1910677 1911552 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1910677..1911552) Clostridium perfringens ATCC 13124 4202471 YP_696127.1 CDS CPF_1689 NC_008261.1 1911610 1912236 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(1911610..1912236) Clostridium perfringens ATCC 13124 4203383 YP_696128.1 CDS hemA NC_008261.1 1912236 1913438 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1912236..1913438) Clostridium perfringens ATCC 13124 4201303 YP_696129.1 CDS arsC NC_008261.1 1913855 1914835 R identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C complement(1913855..1914835) Clostridium perfringens ATCC 13124 4202648 YP_696130.1 CDS asrB NC_008261.1 1914849 1915640 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(1914849..1915640) Clostridium perfringens ATCC 13124 4202725 YP_696131.1 CDS CPF_1693 NC_008261.1 1915633 1916649 R identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910; sulfite reductase, iron-sulfur subunit complement(1915633..1916649) Clostridium perfringens ATCC 13124 4203458 YP_696132.1 CDS CPF_1694 NC_008261.1 1916889 1917581 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(1916889..1917581) Clostridium perfringens ATCC 13124 4202246 YP_696133.1 CDS fnt NC_008261.1 1917799 1918596 R identified by similarity to SP:P11097; match to protein family HMM PF01226; formate/nitrite transporter complement(1917799..1918596) Clostridium perfringens ATCC 13124 4202515 YP_696134.1 CDS CPF_1696 NC_008261.1 1918804 1919424 R hypothetical protein complement(1918804..1919424) Clostridium perfringens ATCC 13124 4202663 YP_696135.1 CDS CPF_1697 NC_008261.1 1919402 1919695 R identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein complement(1919402..1919695) Clostridium perfringens ATCC 13124 4201872 YP_696136.1 CDS CPF_1698 NC_008261.1 1919946 1922006 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1919946..1922006 Clostridium perfringens ATCC 13124 4201545 YP_696137.1 CDS CPF_1699 NC_008261.1 1922470 1923735 R hypothetical protein complement(1922470..1923735) Clostridium perfringens ATCC 13124 4203666 YP_696138.1 CDS CPF_1702 NC_008261.1 1925350 1925541 R hypothetical protein complement(1925350..1925541) Clostridium perfringens ATCC 13124 4203565 YP_696139.1 CDS CPF_1703 NC_008261.1 1925590 1926219 R identified by match to protein family HMM PF00075; ribonuclease HI complement(1925590..1926219) Clostridium perfringens ATCC 13124 4203512 YP_696140.1 CDS CPF_1704 NC_008261.1 1926235 1927206 R identified by similarity to GB:AAO35153.1; match to protein family HMM PF06803; hypothetical protein complement(1926235..1927206) Clostridium perfringens ATCC 13124 4201137 YP_696141.1 CDS CPF_1705 NC_008261.1 1927319 1928347 R identified by match to protein family HMM PF01694; rhomboid family protein complement(1927319..1928347) Clostridium perfringens ATCC 13124 4200975 YP_696142.1 CDS pepF NC_008261.1 1928365 1930164 R identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F complement(1928365..1930164) Clostridium perfringens ATCC 13124 4203025 YP_696143.1 CDS CPF_1707 NC_008261.1 1930185 1930583 R identified by similarity to PIR:F97017; hypothetical protein complement(1930185..1930583) Clostridium perfringens ATCC 13124 4201738 YP_696144.1 CDS CPF_1708 NC_008261.1 1930752 1931087 D identified by similarity to PIR:E97017; hypothetical protein 1930752..1931087 Clostridium perfringens ATCC 13124 4202874 YP_696145.1 CDS CPF_1709 NC_008261.1 1931160 1931828 D identified by similarity to SP:O87862; match to protein family HMM PF00005; zinc ABC transporter ATP-binding protein 1931160..1931828 Clostridium perfringens ATCC 13124 4202700 YP_696146.1 CDS CPF_1710 NC_008261.1 1931847 1932656 D identified by match to protein family HMM PF00950; zinc ABC transporter permease 1931847..1932656 Clostridium perfringens ATCC 13124 4201832 YP_696147.1 CDS CPF_1711 NC_008261.1 1932814 1934205 R identified by similarity to GB:AAD35897.1; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1932814..1934205) Clostridium perfringens ATCC 13124 4203239 YP_696148.1 CDS CPF_1712 NC_008261.1 1934484 1936907 R hypothetical protein complement(1934484..1936907) Clostridium perfringens ATCC 13124 4201119 YP_696149.1 CDS CPF_1713 NC_008261.1 1937175 1937585 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1937175..1937585) Clostridium perfringens ATCC 13124 4203500 YP_696150.1 CDS CPF_1714 NC_008261.1 1937878 1938705 R identified by similarity to SP:P08188; match to protein family HMM PF03613; PTS system transporter subunit IID complement(1937878..1938705) Clostridium perfringens ATCC 13124 4201481 YP_696151.1 CDS CPF_1715 NC_008261.1 1938705 1939511 R identified by similarity to SP:P08187; match to protein family HMM PF03609; PTS system transporter subunit IIC complement(1938705..1939511) Clostridium perfringens ATCC 13124 4203180 YP_696152.1 CDS CPF_1716 NC_008261.1 1939665 1940162 R identified by similarity to SP:P37081; match to protein family HMM PF03830; PTS system transporter subunit IIB complement(1939665..1940162) Clostridium perfringens ATCC 13124 4202412 YP_696153.1 CDS CPF_1717 NC_008261.1 1940317 1940736 R identified by match to protein family HMM PF03610; PTS system transporter subunit IIA complement(1940317..1940736) Clostridium perfringens ATCC 13124 4203417 YP_696154.1 CDS CPF_1718 NC_008261.1 1941146 1942348 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1941146..1942348 Clostridium perfringens ATCC 13124 4201543 YP_696155.1 CDS CPF_1719 NC_008261.1 1942407 1942772 R identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909; hypothetical protein complement(1942407..1942772) Clostridium perfringens ATCC 13124 4201475 YP_696156.1 CDS CPF_1720 NC_008261.1 1943029 1944315 R identified by match to protein family HMM PF00266; class V aminotransferase complement(1943029..1944315) Clostridium perfringens ATCC 13124 4201538 YP_696157.1 CDS CPF_1721 NC_008261.1 1944485 1946416 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1944485..1946416 Clostridium perfringens ATCC 13124 4203479 YP_696158.1 CDS dut NC_008261.1 1946580 1947044 R identified by match to protein family HMM PF00692; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1946580..1947044) Clostridium perfringens ATCC 13124 4202603 YP_696159.1 CDS CPF_1723 NC_008261.1 1947179 1947769 R hypothetical protein complement(1947179..1947769) Clostridium perfringens ATCC 13124 4203331 YP_696160.1 CDS CPF_1724 NC_008261.1 1947855 1948409 R identified by similarity to GB:AAP29334.1; hypothetical protein complement(1947855..1948409) Clostridium perfringens ATCC 13124 4202912 YP_696161.1 CDS CPF_1725 NC_008261.1 1948648 1949295 D identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1948648..1949295 Clostridium perfringens ATCC 13124 4201254 YP_696162.1 CDS CPF_1726 NC_008261.1 1949348 1950232 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1949348..1950232) Clostridium perfringens ATCC 13124 4203063 YP_696163.1 CDS CPF_1727 NC_008261.1 1950244 1950528 R hypothetical protein complement(1950244..1950528) Clostridium perfringens ATCC 13124 4201790 YP_696164.1 CDS CPF_1728 NC_008261.1 1950704 1951420 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 1950704..1951420 Clostridium perfringens ATCC 13124 4201831 YP_696165.1 CDS CPF_1729 NC_008261.1 1951437 1951973 R hypothetical protein complement(1951437..1951973) Clostridium perfringens ATCC 13124 4201502 YP_696166.1 CDS CPF_1730 NC_008261.1 1952092 1952727 R identified by similarity to GB:AAO36152.1; hypothetical protein complement(1952092..1952727) Clostridium perfringens ATCC 13124 4200947 YP_696167.1 CDS CPF_1731 NC_008261.1 1952947 1954602 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; SulP family sulfate permease 1952947..1954602 Clostridium perfringens ATCC 13124 4201928 YP_696168.1 CDS CPF_1732 NC_008261.1 1954643 1954795 R hypothetical protein complement(1954643..1954795) Clostridium perfringens ATCC 13124 4202354 YP_696169.1 CDS CPF_1733 NC_008261.1 1954872 1955837 R identified by match to protein family HMM PF00294; PfkB family kinase complement(1954872..1955837) Clostridium perfringens ATCC 13124 4203516 YP_696170.1 CDS CPF_1734 NC_008261.1 1955877 1956071 R identified by similarity to GB:AAO79751.1; hypothetical protein complement(1955877..1956071) Clostridium perfringens ATCC 13124 4201372 YP_696171.1 CDS CPF_1735 NC_008261.1 1956329 1957657 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1956329..1957657) Clostridium perfringens ATCC 13124 4203508 YP_696172.1 CDS CPF_1736 NC_008261.1 1957678 1958364 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1957678..1958364) Clostridium perfringens ATCC 13124 4201877 YP_696173.1 CDS CPF_1737 NC_008261.1 1958366 1959121 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1958366..1959121) Clostridium perfringens ATCC 13124 4201567 YP_696174.1 CDS CPF_1738 NC_008261.1 1959096 1960064 R identified by similarity to GB:AAS10709.1; hypothetical protein complement(1959096..1960064) Clostridium perfringens ATCC 13124 4202015 YP_696175.1 CDS CPF_1739 NC_008261.1 1960172 1960273 R hypothetical protein complement(1960172..1960273) Clostridium perfringens ATCC 13124 4201953 YP_696176.1 CDS CPF_1740 NC_008261.1 1960347 1960532 R identified by similarity to PDB:1F2U_A; hypothetical protein complement(1960347..1960532) Clostridium perfringens ATCC 13124 4203007 YP_696177.1 CDS CPF_1741 NC_008261.1 1960736 1961593 R hypothetical protein complement(1960736..1961593) Clostridium perfringens ATCC 13124 4202085 YP_696178.1 CDS CPF_1742 NC_008261.1 1961697 1962473 R identified by similarity to GB:AAO80309.1; match to protein family HMM PF01925; hypothetical protein complement(1961697..1962473) Clostridium perfringens ATCC 13124 4201343 YP_696179.1 CDS CPF_1743 NC_008261.1 1962709 1963131 D hypothetical protein 1962709..1963131 Clostridium perfringens ATCC 13124 4203836 YP_696180.1 CDS CPF_1744 NC_008261.1 1963333 1963833 R DedA family membrane protein complement(1963333..1963833) Clostridium perfringens ATCC 13124 4203655 YP_696181.1 CDS CPF_1745 NC_008261.1 1963928 1964425 R DedA family protein complement(1963928..1964425) Clostridium perfringens ATCC 13124 4201101 YP_696182.1 CDS CPF_1746 NC_008261.1 1964699 1965736 R identified by match to protein family HMM PF01171; PP-loop family protein complement(1964699..1965736) Clostridium perfringens ATCC 13124 4202746 YP_696183.1 CDS CPF_1747 NC_008261.1 1965937 1966206 D ACT domain-containing protein; hypothetical protein 1965937..1966206 Clostridium perfringens ATCC 13124 4202606 YP_696184.1 CDS CPF_1748 NC_008261.1 1966223 1967575 D identified by similarity to GB:AAF42001.1; match to protein family HMM PF05167; hypothetical protein 1966223..1967575 Clostridium perfringens ATCC 13124 4202340 YP_696185.1 CDS CPF_1749 NC_008261.1 1967787 1968290 R identified by similarity to GB:AAO36815.1; match to protein family HMM PF06177; hypothetical protein complement(1967787..1968290) Clostridium perfringens ATCC 13124 4203636 YP_696186.1 CDS CPF_1750 NC_008261.1 1968615 1969490 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1968615..1969490) Clostridium perfringens ATCC 13124 4200994 YP_696187.1 CDS virS NC_008261.1 1969661 1970983 R identified by similarity to PIR:S60140; match to protein family HMM PF02518; sensor histidine kinase VirS complement(1969661..1970983) Clostridium perfringens ATCC 13124 4203452 YP_696188.1 CDS CPF_1752 NC_008261.1 1970977 1971687 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator complement(1970977..1971687) Clostridium perfringens ATCC 13124 4201744 YP_696189.1 CDS CPF_1753 NC_008261.1 1971826 1972839 R identified by similarity to SP:Q02114; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1971826..1972839) Clostridium perfringens ATCC 13124 4202107 YP_696190.1 CDS CPF_1754 NC_008261.1 1972936 1973223 R identified by similarity to PIR:C97072; match to protein family HMM PF01910; hypothetical protein complement(1972936..1973223) Clostridium perfringens ATCC 13124 4202390 YP_696191.1 CDS CPF_1755 NC_008261.1 1973447 1974460 R identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein complement(1973447..1974460) Clostridium perfringens ATCC 13124 4203693 YP_696192.1 CDS CPF_1756 NC_008261.1 1974886 1976184 R identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter complement(1974886..1976184) Clostridium perfringens ATCC 13124 4201623 YP_696193.1 CDS CPF_1757 NC_008261.1 1976372 1977955 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1976372..1977955 Clostridium perfringens ATCC 13124 4201504 YP_696194.1 CDS CPF_1758 NC_008261.1 1978006 1978968 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(1978006..1978968) Clostridium perfringens ATCC 13124 4203887 YP_696195.1 CDS CPF_1759 NC_008261.1 1979260 1980975 R identified by match to protein family HMM PF02012; BNR/Asp-box repeat-containing protein complement(1979260..1980975) Clostridium perfringens ATCC 13124 4201223 YP_696196.1 CDS topB NC_008261.1 1981288 1983483 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1981288..1983483) Clostridium perfringens ATCC 13124 4203225 YP_696197.1 CDS CPF_1761 NC_008261.1 1983571 1984989 R identified by match to protein family HMM PF03703; hypothetical protein complement(1983571..1984989) Clostridium perfringens ATCC 13124 4201855 YP_696198.1 CDS CPF_1762 NC_008261.1 1984999 1985466 R identified by match to protein family HMM PF03703; hypothetical protein complement(1984999..1985466) Clostridium perfringens ATCC 13124 4202659 YP_696199.1 CDS CPF_1763 NC_008261.1 1985610 1985978 R hypothetical protein complement(1985610..1985978) Clostridium perfringens ATCC 13124 4202656 YP_696200.1 CDS CPF_1764 NC_008261.1 1986215 1989496 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495; sensor histidine kinase/response regulator complement(1986215..1989496) Clostridium perfringens ATCC 13124 4202299 YP_696201.1 CDS CPF_1765 NC_008261.1 1989578 1990678 R identified by similarity to GB:AAO35207.1; hypothetical protein complement(1989578..1990678) Clostridium perfringens ATCC 13124 4201467 YP_696202.1 CDS CPF_1766 NC_008261.1 1990693 1992060 R identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate biosynthesis protein AlgI complement(1990693..1992060) Clostridium perfringens ATCC 13124 4202628 YP_696203.1 CDS CPF_1767 NC_008261.1 1992295 1992792 R lipoprotein complement(1992295..1992792) Clostridium perfringens ATCC 13124 4201535 YP_696204.1 CDS CPF_1768 NC_008261.1 1993044 1994261 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(1993044..1994261) Clostridium perfringens ATCC 13124 4202444 YP_696205.1 CDS CPF_1769 NC_008261.1 1994285 1994596 R identified by similarity to GB:CAE77656.1; hypothetical protein complement(1994285..1994596) Clostridium perfringens ATCC 13124 4203481 YP_696206.1 CDS gdhA NC_008261.1 1994906 1996252 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1994906..1996252) Clostridium perfringens ATCC 13124 4202007 YP_696207.1 CDS CPF_1771 NC_008261.1 1996735 1997229 R hypothetical protein complement(1996735..1997229) Clostridium perfringens ATCC 13124 4201113 YP_696208.1 CDS ilvE NC_008261.1 1997463 1998488 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1997463..1998488 Clostridium perfringens ATCC 13124 4202013 YP_696209.1 CDS CPF_1773 NC_008261.1 1998532 1998945 R identified by similarity to GB:AAM31362.1; hypothetical protein complement(1998532..1998945) Clostridium perfringens ATCC 13124 4202353 YP_696210.1 CDS CPF_1774 NC_008261.1 1998968 1999522 R hypothetical protein complement(1998968..1999522) Clostridium perfringens ATCC 13124 4203311 YP_696211.1 CDS CPF_1775 NC_008261.1 1999685 2000611 D identified by similarity to PDB:1U24; phytase 1999685..2000611 Clostridium perfringens ATCC 13124 4201448 YP_696212.1 CDS CPF_1776 NC_008261.1 2000732 2002501 R identified by similarity to GB:AAB08042.1; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein complement(2000732..2002501) Clostridium perfringens ATCC 13124 4202938 YP_696213.1 CDS CPF_1777 NC_008261.1 2002536 2004257 R identified by similarity to GB:AAB08041.1; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein complement(2002536..2004257) Clostridium perfringens ATCC 13124 4203334 YP_696214.1 CDS CPF_1778 NC_008261.1 2004877 2005635 R hypothetical protein complement(2004877..2005635) Clostridium perfringens ATCC 13124 4201851 YP_696215.1 CDS CPF_1779 NC_008261.1 2005855 2006214 R hypothetical protein complement(2005855..2006214) Clostridium perfringens ATCC 13124 4201754 YP_696216.1 CDS CPF_1780 NC_008261.1 2006482 2007819 D lipoprotein 2006482..2007819 Clostridium perfringens ATCC 13124 4203683 YP_696217.1 CDS CPF_1781 NC_008261.1 2007886 2008302 R hypothetical protein complement(2007886..2008302) Clostridium perfringens ATCC 13124 4203575 YP_696218.1 CDS CPF_1782 NC_008261.1 2008522 2009469 R identified by similarity to GB:AAC99323.1; match to protein family HMM PF00294; fructokinase complement(2008522..2009469) Clostridium perfringens ATCC 13124 4202365 YP_696219.1 CDS CPF_1783 NC_008261.1 2009462 2010925 R identified by similarity to SP:P07819; match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate dehydrogenase complement(2009462..2010925) Clostridium perfringens ATCC 13124 4203319 YP_696220.1 CDS scrR NC_008261.1 2010965 2011912 R identified by similarity to SP:P74892; match to protein family HMM PF00532; sucrose operon repressor complement(2010965..2011912) Clostridium perfringens ATCC 13124 4202505 YP_696221.1 CDS CPF_1785 NC_008261.1 2012076 2013428 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996; PTS system, sucrose-specific IIBC component complement(2012076..2013428) Clostridium perfringens ATCC 13124 4202823 YP_696222.1 CDS CPF_1786 NC_008261.1 2013752 2014378 R identified by similarity to PIR:B96903; hypothetical protein complement(2013752..2014378) Clostridium perfringens ATCC 13124 4202307 YP_696223.1 CDS CPF_1787 NC_008261.1 2014894 2015940 R identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C complement(2014894..2015940) Clostridium perfringens ATCC 13124 4203364 YP_696224.1 CDS CPF_1788 NC_008261.1 2015953 2016744 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(2015953..2016744) Clostridium perfringens ATCC 13124 4202717 YP_696225.1 CDS CPF_1789 NC_008261.1 2016745 2017776 R identified by similarity to SP:P26474; match to protein family HMM PF00037; match to protein family HMM TIGR02910; anaerobic sulfite reductase subunit A complement(2016745..2017776) Clostridium perfringens ATCC 13124 4202206 YP_696226.1 CDS CPF_1790 NC_008261.1 2018036 2018446 D identified by similarity to GB:AAK80322.1; hypothetical protein 2018036..2018446 Clostridium perfringens ATCC 13124 4201463 YP_696227.1 CDS CPF_1791 NC_008261.1 2018543 2019727 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2018543..2019727) Clostridium perfringens ATCC 13124 4201188 YP_696228.1 CDS CPF_1792 NC_008261.1 2019714 2020415 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2019714..2020415) Clostridium perfringens ATCC 13124 4201011 YP_696229.1 CDS CPF_1793 NC_008261.1 2020405 2021535 R hypothetical protein complement(2020405..2021535) Clostridium perfringens ATCC 13124 4202132 YP_696230.1 CDS bioD NC_008261.1 2021762 2022448 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2021762..2022448) Clostridium perfringens ATCC 13124 4202332 YP_696231.1 CDS bioB NC_008261.1 2022451 2023410 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(2022451..2023410) Clostridium perfringens ATCC 13124 4201480 YP_696232.1 CDS CPF_1797 NC_008261.1 2024185 2025291 R identified by similarity to PIR:D97239; match to protein family HMM PF06207; hypothetical protein complement(2024185..2025291) Clostridium perfringens ATCC 13124 4202230 YP_696233.1 CDS CPF_1799 NC_008261.1 2029106 2031094 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase complement(2029106..2031094) Clostridium perfringens ATCC 13124 4203112 YP_696234.1 CDS prs NC_008261.1 2031504 2032598 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2031504..2032598 Clostridium perfringens ATCC 13124 4201954 YP_696235.1 CDS CPF_1801 NC_008261.1 2032650 2033711 R identified by similarity to GB:AAS39397.1; hypothetical protein complement(2032650..2033711) Clostridium perfringens ATCC 13124 4203287 YP_696236.1 CDS CPF_1802 NC_008261.1 2033922 2034920 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(2033922..2034920) Clostridium perfringens ATCC 13124 4201961 YP_696237.1 CDS pulA NC_008261.1 2035132 2037099 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase complement(2035132..2037099) Clostridium perfringens ATCC 13124 4201252 YP_696238.1 CDS CPF_1804 NC_008261.1 2037275 2037811 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2037275..2037811 Clostridium perfringens ATCC 13124 4201185 YP_696239.1 CDS CPF_1805 NC_008261.1 2037867 2038712 R lipoprotein complement(2037867..2038712) Clostridium perfringens ATCC 13124 4201789 YP_696240.1 CDS CPF_1806 NC_008261.1 2038821 2039090 R hypothetical protein complement(2038821..2039090) Clostridium perfringens ATCC 13124 4203938 YP_696241.1 CDS CPF_1807 NC_008261.1 2039285 2041300 R identified by match to protein family HMM PF00884; hypothetical protein complement(2039285..2041300) Clostridium perfringens ATCC 13124 4202824 YP_696242.1 CDS CPF_1808 NC_008261.1 2041602 2042552 R identified by similarity to PIR:C97206; match to protein family HMM PF06081; hypothetical protein complement(2041602..2042552) Clostridium perfringens ATCC 13124 4203472 YP_696243.1 CDS CPF_1809 NC_008261.1 2042700 2043341 D identified by match to protein family HMM PF01255; undecaprenyl diphosphate synthase 2042700..2043341 Clostridium perfringens ATCC 13124 4203359 YP_696244.1 CDS CPF_1810 NC_008261.1 2043346 2044845 D identified by similarity to SP:P22871; match to protein family HMM PF01593; match to protein family HMM TIGR02734; phytoene dehydrogenase 2043346..2044845 Clostridium perfringens ATCC 13124 4203281 YP_696245.1 CDS CPF_1811 NC_008261.1 2044877 2046568 R identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254; diguanylate cyclase complement(2044877..2046568) Clostridium perfringens ATCC 13124 4202374 YP_696246.1 CDS CPF_1812 NC_008261.1 2046628 2046762 R lipoprotein complement(2046628..2046762) Clostridium perfringens ATCC 13124 4203917 YP_696247.1 CDS CPF_1813 NC_008261.1 2046783 2047427 R identified by match to protein family HMM PF04647; accessory gene regulator protein B complement(2046783..2047427) Clostridium perfringens ATCC 13124 4200998 YP_696248.1 CDS CPF_1814 NC_008261.1 2047429 2047890 R identified by similarity to GB:AAM23836.1; hypothetical protein complement(2047429..2047890) Clostridium perfringens ATCC 13124 4202599 YP_696249.1 CDS CPF_1815 NC_008261.1 2047907 2048473 R identified by similarity to SP:P58010; hypothetical protein complement(2047907..2048473) Clostridium perfringens ATCC 13124 4202770 YP_696250.1 CDS CPF_1816 NC_008261.1 2048625 2049128 R DedA family membrane protein complement(2048625..2049128) Clostridium perfringens ATCC 13124 4201170 YP_696251.1 CDS cax NC_008261.1 2049445 2050440 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; calcium/proton exchanger complement(2049445..2050440) Clostridium perfringens ATCC 13124 4202694 YP_696252.1 CDS dinB NC_008261.1 2050570 2051649 R identified by match to protein family HMM PF00817; DNA polymerase IV complement(2050570..2051649) Clostridium perfringens ATCC 13124 4202197 YP_696253.1 CDS CPF_1819 NC_008261.1 2051792 2052379 R identified by similarity to SP:P35137; match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2051792..2052379) Clostridium perfringens ATCC 13124 4202418 YP_696254.1 CDS CPF_1820 NC_008261.1 2052602 2053006 R hypothetical protein complement(2052602..2053006) Clostridium perfringens ATCC 13124 4200976 YP_696255.1 CDS CPF_1821 NC_008261.1 2053123 2053953 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase complement(2053123..2053953) Clostridium perfringens ATCC 13124 4203467 YP_696256.1 CDS pspA NC_008261.1 2054256 2054969 R identified by similarity to SP:P23853; match to protein family HMM PF04012; phage shock protein A complement(2054256..2054969) Clostridium perfringens ATCC 13124 4202849 YP_696257.1 CDS CPF_1823 NC_008261.1 2055055 2055756 R lipoprotein complement(2055055..2055756) Clostridium perfringens ATCC 13124 4201474 YP_696258.1 CDS CPF_1824 NC_008261.1 2055902 2056567 D identified by similarity to PIR:B96938; hypothetical protein 2055902..2056567 Clostridium perfringens ATCC 13124 4202184 YP_696259.1 CDS gshAB NC_008261.1 2056706 2059042 R Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase complement(2056706..2059042) Clostridium perfringens ATCC 13124 4203651 YP_696260.1 CDS CPF_1826 NC_008261.1 2059439 2060356 R identified by match to protein family HMM PF01734; patatin family phospholipase complement(2059439..2060356) Clostridium perfringens ATCC 13124 4203104 YP_696261.1 CDS CPF_1827 NC_008261.1 2060503 2061792 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease complement(2060503..2061792) Clostridium perfringens ATCC 13124 4202998 YP_696262.1 CDS CPF_1828 NC_008261.1 2062044 2062412 R identified by similarity to GB:AAO34773.1; match to protein family HMM PF02629; hypothetical protein complement(2062044..2062412) Clostridium perfringens ATCC 13124 4201316 YP_696263.1 CDS CPF_1829 NC_008261.1 2062609 2063562 R identified by match to protein family HMM PF02653; ABC transporter permease complement(2062609..2063562) Clostridium perfringens ATCC 13124 4203058 YP_696264.1 CDS CPF_1830 NC_008261.1 2063562 2064659 R identified by match to protein family HMM PF02653; ABC transporter permease complement(2063562..2064659) Clostridium perfringens ATCC 13124 4203471 YP_696265.1 CDS CPF_1831 NC_008261.1 2064649 2066184 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2064649..2066184) Clostridium perfringens ATCC 13124 4202616 YP_696266.1 CDS CPF_1832 NC_008261.1 2066325 2067437 R identified by match to protein family HMM PF02608; Bmp family lipoprotein complement(2066325..2067437) Clostridium perfringens ATCC 13124 4201288 YP_696267.1 CDS CPF_1833 NC_008261.1 2067992 2068813 R identified by similarity to SP:P18773; esterase complement(2067992..2068813) Clostridium perfringens ATCC 13124 4201913 YP_696268.1 CDS CPF_1834 NC_008261.1 2069241 2070062 R identified by match to protein family HMM PF02361; cobalt ABC transporter permease complement(2069241..2070062) Clostridium perfringens ATCC 13124 4203835 YP_696269.1 CDS CPF_1835 NC_008261.1 2070071 2071777 R identified by similarity to SP:Q8XK20; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein complement(2070071..2071777) Clostridium perfringens ATCC 13124 4202219 YP_696270.1 CDS CPF_1836 NC_008261.1 2071923 2072480 R identified by match to protein family HMM PF07155; hypothetical protein complement(2071923..2072480) Clostridium perfringens ATCC 13124 4202378 YP_696271.1 CDS CPF_1837 NC_008261.1 2072700 2073152 D identified by match to protein family HMM PF00581; rhodanese domain-containing protein 2072700..2073152 Clostridium perfringens ATCC 13124 4201131 YP_696272.1 CDS CPF_1838 NC_008261.1 2073198 2073521 R hypothetical protein complement(2073198..2073521) Clostridium perfringens ATCC 13124 4203088 YP_696273.1 CDS CPF_1839 NC_008261.1 2073663 2076857 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase complement(2073663..2076857) Clostridium perfringens ATCC 13124 4202241 YP_696274.1 CDS glgB NC_008261.1 2076957 2078936 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2076957..2078936) Clostridium perfringens ATCC 13124 4201895 YP_696275.1 CDS CPF_1841 NC_008261.1 2079031 2079738 R hypothetical protein complement(2079031..2079738) Clostridium perfringens ATCC 13124 4202280 YP_696276.1 CDS CPF_1842 NC_008261.1 2079978 2080748 D identified by similarity to PIR:C97179; match to protein family HMM PF06738; hypothetical protein 2079978..2080748 Clostridium perfringens ATCC 13124 4202583 YP_696277.1 CDS CPF_1843 NC_008261.1 2080745 2081236 D hypothetical protein 2080745..2081236 Clostridium perfringens ATCC 13124 4201020 YP_696278.1 CDS CPF_1844 NC_008261.1 2081429 2082196 R hypothetical protein complement(2081429..2082196) Clostridium perfringens ATCC 13124 4202142 YP_696279.1 CDS CPF_1845 NC_008261.1 2082544 2083731 R identified by similarity to GB:AAK15004.1; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; FmtC domain-containing protein complement(2082544..2083731) Clostridium perfringens ATCC 13124 4202643 YP_696280.1 CDS CPF_1846 NC_008261.1 2083775 2084254 R hypothetical protein complement(2083775..2084254) Clostridium perfringens ATCC 13124 4203563 YP_696281.1 CDS CPF_1847 NC_008261.1 2084427 2084750 R identified by match to protein family HMM PF00085; thioredoxin complement(2084427..2084750) Clostridium perfringens ATCC 13124 4202409 YP_696282.1 CDS axe1 NC_008261.1 2084846 2085805 R identified by similarity to GB:AAB68821.1; match to protein family HMM PF05448; acetylxylan esterase complement(2084846..2085805) Clostridium perfringens ATCC 13124 4201423 YP_696283.1 CDS CPF_1849 NC_008261.1 2086247 2087107 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 2086247..2087107 Clostridium perfringens ATCC 13124 4203752 YP_696284.1 CDS CPF_1850 NC_008261.1 2087271 2088062 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 2087271..2088062 Clostridium perfringens ATCC 13124 4201292 YP_696285.1 CDS CPF_1851 NC_008261.1 2088252 2088680 R identified by similarity to GB:AAO34823.1; hypothetical protein complement(2088252..2088680) Clostridium perfringens ATCC 13124 4202327 YP_696286.1 CDS CPF_1852 NC_008261.1 2088792 2089373 R identified by similarity to SP:P25053; match to protein family HMM PF02581; thiamine monophosphate synthase complement(2088792..2089373) Clostridium perfringens ATCC 13124 4202449 YP_696287.1 CDS thiH NC_008261.1 2089404 2090507 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2089404..2090507) Clostridium perfringens ATCC 13124 4203863 YP_696288.1 CDS thiG NC_008261.1 2090520 2091284 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2090520..2091284) Clostridium perfringens ATCC 13124 4201038 YP_696289.1 CDS thiF NC_008261.1 2091413 2092012 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(2091413..2092012) Clostridium perfringens ATCC 13124 4202099 YP_696290.1 CDS thiS NC_008261.1 2092292 2092486 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(2092292..2092486) Clostridium perfringens ATCC 13124 4203089 YP_696291.1 CDS CPF_1857 NC_008261.1 2092764 2094464 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter complement(2092764..2094464) Clostridium perfringens ATCC 13124 4201310 YP_696292.1 CDS CPF_1858 NC_008261.1 2094798 2095604 R identified by match to protein family HMM PF04607; GTP pyrophosphokinase complement(2094798..2095604) Clostridium perfringens ATCC 13124 4203838 YP_696293.1 CDS CPF_1859 NC_008261.1 2095647 2095955 R identified by similarity to GB:AAO35994.1; hypothetical protein complement(2095647..2095955) Clostridium perfringens ATCC 13124 4201055 YP_696294.1 CDS msrB NC_008261.1 2096013 2096456 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(2096013..2096456) Clostridium perfringens ATCC 13124 4202592 YP_696295.1 CDS CPF_1861 NC_008261.1 2096532 2097179 R identified by similarity to PIR:B96903; hypothetical protein complement(2096532..2097179) Clostridium perfringens ATCC 13124 4201099 YP_696296.1 CDS CPF_1862 NC_008261.1 2097329 2097628 D hypothetical protein 2097329..2097628 Clostridium perfringens ATCC 13124 4202175 YP_696297.1 CDS CPF_1863 NC_008261.1 2097676 2098650 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(2097676..2098650) Clostridium perfringens ATCC 13124 4202655 YP_696298.1 CDS CPF_1864 NC_008261.1 2098891 2099160 R hypothetical protein complement(2098891..2099160) Clostridium perfringens ATCC 13124 4203459 YP_696299.1 CDS CPF_1865 NC_008261.1 2099263 2099916 D DedA family membrane protein 2099263..2099916 Clostridium perfringens ATCC 13124 4201680 YP_696300.1 CDS CPF_1866 NC_008261.1 2099985 2100350 R hypothetical protein complement(2099985..2100350) Clostridium perfringens ATCC 13124 4201525 YP_696301.1 CDS CPF_1867 NC_008261.1 2100479 2101804 R identified by match to protein family HMM PF01551; peptidase, M23/M37 family protein complement(2100479..2101804) Clostridium perfringens ATCC 13124 4201240 YP_696302.1 CDS CPF_1868 NC_008261.1 2102011 2102223 R hypothetical protein complement(2102011..2102223) Clostridium perfringens ATCC 13124 4201162 YP_696303.1 CDS CPF_1869 NC_008261.1 2102375 2102563 D hypothetical protein 2102375..2102563 Clostridium perfringens ATCC 13124 4203546 YP_696304.1 CDS CPF_1870 NC_008261.1 2102916 2103311 R identified by similarity to PIR:D97030; hypothetical protein complement(2102916..2103311) Clostridium perfringens ATCC 13124 4201616 YP_696305.1 CDS CPF_1871 NC_008261.1 2103326 2103583 R identified by similarity to GB:AAM24475.1; match to protein family HMM PF06949; hypothetical protein complement(2103326..2103583) Clostridium perfringens ATCC 13124 4203061 YP_696306.1 CDS CPF_1872 NC_008261.1 2103600 2105891 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD complement(2103600..2105891) Clostridium perfringens ATCC 13124 4203642 YP_696307.1 CDS CPF_1873 NC_008261.1 2106406 2106876 D hypothetical protein 2106406..2106876 Clostridium perfringens ATCC 13124 4202443 YP_696308.1 CDS CPF_1874 NC_008261.1 2106958 2107764 R identified by match to protein family HMM PF01545; cation efflux family protein complement(2106958..2107764) Clostridium perfringens ATCC 13124 4201000 YP_696309.1 CDS CPF_1875 NC_008261.1 2108033 2109028 R identified by similarity to GB:AAO35548.1; hypothetical protein complement(2108033..2109028) Clostridium perfringens ATCC 13124 4203699 YP_696310.1 CDS CPF_1876 NC_008261.1 2109170 2109835 D identified by similarity to PIR:A97351; lipoprotein 2109170..2109835 Clostridium perfringens ATCC 13124 4202253 YP_696311.1 CDS CPF_1877 NC_008261.1 2109948 2111873 D hypothetical protein 2109948..2111873 Clostridium perfringens ATCC 13124 4203485 YP_696312.1 CDS CPF_1878 NC_008261.1 2112253 2115507 R identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; Snf2/Rad54 family helicase complement(2112253..2115507) Clostridium perfringens ATCC 13124 4201604 YP_696313.1 CDS CPF_1879 NC_008261.1 2115606 2116139 R identified by match to protein family HMM PF00356; LacI family transcriptional regulator complement(2115606..2116139) Clostridium perfringens ATCC 13124 4201612 YP_696314.1 CDS rbsC NC_008261.1 2117207 2118142 R identified by similarity to SP:P04984; match to protein family HMM PF02653; ribose ABC transporter permease complement(2117207..2118142) Clostridium perfringens ATCC 13124 4202177 YP_696315.1 CDS rbsA NC_008261.1 2118156 2119661 R identified by similarity to SP:P04983; match to protein family HMM PF00005; ribose ABC transporter ATP-binding protein complement(2118156..2119661) Clostridium perfringens ATCC 13124 4203133 YP_696316.1 CDS rbsD NC_008261.1 2119749 2120144 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(2119749..2120144) Clostridium perfringens ATCC 13124 4203336 YP_696317.1 CDS rbsK NC_008261.1 2120147 2121079 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(2120147..2121079) Clostridium perfringens ATCC 13124 4203018 YP_696318.1 CDS def NC_008261.1 2121220 2121687 R identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase complement(2121220..2121687) Clostridium perfringens ATCC 13124 4203570 YP_696319.1 CDS CPF_1886 NC_008261.1 2121843 2122802 R identified by match to protein family HMM PF00953; glycoside hydrolase family protein complement(2121843..2122802) Clostridium perfringens ATCC 13124 4203142 YP_696320.1 CDS CPF_1887 NC_008261.1 2122948 2123514 R identified by match to protein family HMM PF01022; transcriptional regulatory protein complement(2122948..2123514) Clostridium perfringens ATCC 13124 4201819 YP_696321.1 CDS CPF_1888 NC_008261.1 2123730 2124374 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(2123730..2124374) Clostridium perfringens ATCC 13124 4202499 YP_696322.1 CDS CPF_1889 NC_008261.1 2124377 2125759 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(2124377..2125759) Clostridium perfringens ATCC 13124 4202502 YP_696323.1 CDS CPF_1890 NC_008261.1 2125752 2127527 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(2125752..2127527) Clostridium perfringens ATCC 13124 4201875 YP_696324.1 CDS CPF_1891 NC_008261.1 2127544 2127861 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(2127544..2127861) Clostridium perfringens ATCC 13124 4203874 YP_696325.1 CDS CPF_1892 NC_008261.1 2127848 2128855 R produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C complement(2127848..2128855) Clostridium perfringens ATCC 13124 4203271 YP_696326.1 CDS CPF_1893 NC_008261.1 2128868 2129464 R identified by match to protein family HMM PF01991; V-type ATPase, E subunit complement(2128868..2129464) Clostridium perfringens ATCC 13124 4201242 YP_696327.1 CDS CPF_1894 NC_008261.1 2129495 2129989 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(2129495..2129989) Clostridium perfringens ATCC 13124 4202562 YP_696328.1 CDS CPF_1895 NC_008261.1 2130044 2131993 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(2130044..2131993) Clostridium perfringens ATCC 13124 4201195 YP_696329.1 CDS CPF_1896 NC_008261.1 2131980 2132306 R identified by similarity to SP:P00859; match to protein family HMM TIGR02926; hypothetical protein complement(2131980..2132306) Clostridium perfringens ATCC 13124 4201674 YP_696330.1 CDS CPF_1897 NC_008261.1 2132583 2134262 R identified by match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM domain-containing protein complement(2132583..2134262) Clostridium perfringens ATCC 13124 4203640 YP_696331.1 CDS CPF_1898 NC_008261.1 2134162 2134764 R identified by similarity to PIR:A97026; hypothetical protein complement(2134162..2134764) Clostridium perfringens ATCC 13124 4202473 YP_696332.1 CDS CPF_1899 NC_008261.1 2134911 2136197 R identified by similarity to PIR:G97025; hypothetical protein complement(2134911..2136197) Clostridium perfringens ATCC 13124 4203250 YP_696333.1 CDS spoVB NC_008261.1 2136345 2137874 D identified by match to protein family HMM PF01943; match to protein family HMM TIGR02900; stage V sporulation protein B 2136345..2137874 Clostridium perfringens ATCC 13124 4200971 YP_696334.1 CDS CPF_1901 NC_008261.1 2137968 2138768 R hypothetical protein complement(2137968..2138768) Clostridium perfringens ATCC 13124 4202637 YP_696335.1 CDS CPF_1902 NC_008261.1 2138878 2139720 R identified by similarity to PIR:G97101; hypothetical protein complement(2138878..2139720) Clostridium perfringens ATCC 13124 4202797 YP_696336.1 CDS CPF_1903 NC_008261.1 2139732 2140235 R identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase complement(2139732..2140235) Clostridium perfringens ATCC 13124 4203777 YP_696337.1 CDS CPF_1904 NC_008261.1 2140484 2141485 D hypothetical protein 2140484..2141485 Clostridium perfringens ATCC 13124 4202269 YP_696338.1 CDS CPF_1905 NC_008261.1 2141513 2141845 R hypothetical protein complement(2141513..2141845) Clostridium perfringens ATCC 13124 4203109 YP_696339.1 CDS CPF_1906 NC_008261.1 2142083 2142553 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2142083..2142553 Clostridium perfringens ATCC 13124 4202888 YP_696340.1 CDS CPF_1907 NC_008261.1 2142660 2142863 D identified by similarity to PIR:E97020; match to protein family HMM PF04070; hypothetical protein 2142660..2142863 Clostridium perfringens ATCC 13124 4202747 YP_696341.1 CDS CPF_1908 NC_008261.1 2142911 2144617 R hypothetical protein complement(2142911..2144617) Clostridium perfringens ATCC 13124 4203060 YP_696342.1 CDS CPF_1909 NC_008261.1 2144592 2144738 R hypothetical protein complement(2144592..2144738) Clostridium perfringens ATCC 13124 4201740 YP_696343.1 CDS CPF_1910 NC_008261.1 2144855 2145709 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 2144855..2145709 Clostridium perfringens ATCC 13124 4201850 YP_696344.1 CDS CPF_1911 NC_008261.1 2145765 2146448 R identified by similarity to GB:AAO35559.1; hypothetical protein complement(2145765..2146448) Clostridium perfringens ATCC 13124 4201523 YP_696345.1 CDS CPF_1912 NC_008261.1 2146607 2146852 D identified by match to protein family HMM PF04023; ferrous iron transport protein 2146607..2146852 Clostridium perfringens ATCC 13124 4203167 YP_696346.1 CDS feoB NC_008261.1 2146890 2148653 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2146890..2148653 Clostridium perfringens ATCC 13124 4202719 YP_696347.1 CDS CPF_1914 NC_008261.1 2148668 2148817 D hypothetical protein 2148668..2148817 Clostridium perfringens ATCC 13124 4202852 YP_696348.1 CDS argS NC_008261.1 2148863 2150560 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(2148863..2150560) Clostridium perfringens ATCC 13124 4202734 YP_696349.1 CDS CPF_1916 NC_008261.1 2151042 2152550 D identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 2151042..2152550 Clostridium perfringens ATCC 13124 4203543 YP_696350.1 CDS CPF_1917 NC_008261.1 2152648 2153862 R identified by similarity to SP:P19579; CapA domain-containing protein complement(2152648..2153862) Clostridium perfringens ATCC 13124 4202255 YP_696351.1 CDS CPF_1918 NC_008261.1 2154028 2154648 R identified by match to protein family HMM PF02163; M50 family peptidase complement(2154028..2154648) Clostridium perfringens ATCC 13124 4202263 YP_696352.1 CDS CPF_1919 NC_008261.1 2154852 2156231 R identified by match to protein family HMM PF02562; PhoH family protein complement(2154852..2156231) Clostridium perfringens ATCC 13124 4201089 YP_696353.1 CDS CPF_1920 NC_008261.1 2156453 2157067 D identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon 2156453..2157067 Clostridium perfringens ATCC 13124 4202401 YP_696354.1 CDS CPF_1921 NC_008261.1 2157104 2157433 R identified by match to protein family HMM PF00436; single-strand DNA binding protein complement(2157104..2157433) Clostridium perfringens ATCC 13124 4203727 YP_696355.1 CDS purB NC_008261.1 2157713 2159143 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2157713..2159143) Clostridium perfringens ATCC 13124 4201339 YP_696356.1 CDS CPF_1923 NC_008261.1 2159386 2159646 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; HPr family phosphocarrier protein complement(2159386..2159646) Clostridium perfringens ATCC 13124 4202379 YP_696357.1 CDS aspB NC_008261.1 2159741 2160934 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2159741..2160934) Clostridium perfringens ATCC 13124 4202426 YP_696358.1 CDS spoVS NC_008261.1 2161087 2161347 R identified by match to protein family HMM PF04232; stage V sporulation protein S complement(2161087..2161347) Clostridium perfringens ATCC 13124 4201362 YP_696359.1 CDS CPF_1926 NC_008261.1 2161565 2163100 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(2161565..2163100) Clostridium perfringens ATCC 13124 4202752 YP_696360.1 CDS recA NC_008261.1 2163448 2164506 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2163448..2164506) Clostridium perfringens ATCC 13124 4203515 YP_696361.1 CDS pgsA NC_008261.1 2164642 2165232 R identified by similarity to SP:P46322; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2164642..2165232) Clostridium perfringens ATCC 13124 4202483 YP_696362.2 CDS CPF_1929 NC_008261.1 2165216 2166553 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein complement(2165216..2166553) Clostridium perfringens ATCC 13124 4202610 YP_696363.1 CDS ftsK NC_008261.1 2166622 2169012 R identified by similarity to SP:P21458; match to protein family HMM PF01580; DNA translocase FtsK complement(2166622..2169012) Clostridium perfringens ATCC 13124 4203722 YP_696364.1 CDS clpP NC_008261.1 2169144 2169833 R identified by match to protein family HMM PF00574; Clp protease complement(2169144..2169833) Clostridium perfringens ATCC 13124 4202194 YP_696365.1 CDS CPF_1932 NC_008261.1 2169887 2171083 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase complement(2169887..2171083) Clostridium perfringens ATCC 13124 4201117 YP_696366.1 CDS CPF_1933 NC_008261.1 2171097 2171372 R identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein complement(2171097..2171372) Clostridium perfringens ATCC 13124 4203228 YP_696367.1 CDS pnpA NC_008261.1 2171507 2173615 R identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase complement(2171507..2173615) Clostridium perfringens ATCC 13124 4202582 YP_696368.1 CDS rpsO NC_008261.1 2173707 2173970 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2173707..2173970) Clostridium perfringens ATCC 13124 4202398 YP_696369.1 CDS ribF NC_008261.1 2174086 2175015 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(2174086..2175015) Clostridium perfringens ATCC 13124 4201876 YP_696370.1 CDS truB NC_008261.1 2175019 2175903 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2175019..2175903) Clostridium perfringens ATCC 13124 4201500 YP_696371.1 CDS CPF_1938 NC_008261.1 2175907 2176860 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein complement(2175907..2176860) Clostridium perfringens ATCC 13124 4203877 YP_696372.1 CDS rbfA NC_008261.1 2176864 2177214 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2176864..2177214) Clostridium perfringens ATCC 13124 4202464 YP_696373.1 CDS infB NC_008261.1 2177236 2179275 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2177236..2179275) Clostridium perfringens ATCC 13124 4203378 YP_696374.1 CDS CPF_1941 NC_008261.1 2179306 2179608 R identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein complement(2179306..2179608) Clostridium perfringens ATCC 13124 4203139 YP_696375.1 CDS CPF_1942 NC_008261.1 2179601 2179867 R identified by similarity to PIR:B97122; match to protein family HMM PF04296; hypothetical protein complement(2179601..2179867) Clostridium perfringens ATCC 13124 4203244 YP_696376.1 CDS nusA NC_008261.1 2179895 2180995 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(2179895..2180995) Clostridium perfringens ATCC 13124 4201975 YP_696377.1 CDS CPF_1944 NC_008261.1 2181015 2181479 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(2181015..2181479) Clostridium perfringens ATCC 13124 4202626 YP_696378.1 CDS polC NC_008261.1 2181712 2186061 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC complement(2181712..2186061) Clostridium perfringens ATCC 13124 4202564 YP_696379.1 CDS ispG NC_008261.1 2186139 2187188 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2186139..2187188) Clostridium perfringens ATCC 13124 4202359 YP_696380.1 CDS CPF_1947 NC_008261.1 2187208 2188215 R identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(2187208..2188215) Clostridium perfringens ATCC 13124 4201347 YP_696381.1 CDS dxr NC_008261.1 2188227 2189381 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2188227..2189381) Clostridium perfringens ATCC 13124 4201805 YP_696382.2 CDS cdsA NC_008261.1 2189741 2190544 R identified by similarity to SP:O31752; match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(2189741..2190544) Clostridium perfringens ATCC 13124 4203200 YP_696383.1 CDS uppS NC_008261.1 2190553 2191314 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(2190553..2191314) Clostridium perfringens ATCC 13124 4203254 YP_696384.1 CDS frr NC_008261.1 2191379 2191936 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2191379..2191936) Clostridium perfringens ATCC 13124 4203579 YP_696385.1 CDS pyrH NC_008261.1 2191950 2192663 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2191950..2192663) Clostridium perfringens ATCC 13124 4203637 YP_696386.1 CDS tsf NC_008261.1 2192756 2193667 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2192756..2193667) Clostridium perfringens ATCC 13124 4201938 YP_696387.1 CDS rpsB NC_008261.1 2193747 2194448 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2193747..2194448) Clostridium perfringens ATCC 13124 4202101 YP_696388.1 CDS codY NC_008261.1 2194831 2195607 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(2194831..2195607) Clostridium perfringens ATCC 13124 4203122 YP_696389.1 CDS topA NC_008261.1 2195749 2197851 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2195749..2197851) Clostridium perfringens ATCC 13124 4202010 YP_696390.1 CDS dprA NC_008261.1 2197896 2198978 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(2197896..2198978) Clostridium perfringens ATCC 13124 4203255 YP_696391.1 CDS CPF_1958 NC_008261.1 2198979 2200502 R identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein complement(2198979..2200502) Clostridium perfringens ATCC 13124 4201239 YP_696392.1 CDS CPF_1959 NC_008261.1 2200632 2201000 D identified by similarity to SP:Q895L7; match to protein family HMM PF02021; hypothetical protein 2200632..2201000 Clostridium perfringens ATCC 13124 4202602 YP_696393.1 CDS rnhB NC_008261.1 2201001 2201819 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2201001..2201819) Clostridium perfringens ATCC 13124 4202931 YP_696394.1 CDS rbgA NC_008261.1 2201835 2202680 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(2201835..2202680) Clostridium perfringens ATCC 13124 4201487 YP_696395.1 CDS rplS NC_008261.1 2202827 2203174 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2202827..2203174) Clostridium perfringens ATCC 13124 4203297 YP_696396.1 CDS trmD NC_008261.1 2203295 2204005 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2203295..2204005) Clostridium perfringens ATCC 13124 4201728 YP_696397.1 CDS rimM NC_008261.1 2203995 2204492 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2203995..2204492) Clostridium perfringens ATCC 13124 4203576 YP_696398.1 CDS CPF_1965 NC_008261.1 2204548 2204775 R identified by similarity to SP:Q97I96; hypothetical protein complement(2204548..2204775) Clostridium perfringens ATCC 13124 4201311 YP_696399.1 CDS rpsP NC_008261.1 2204819 2205064 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2204819..2205064) Clostridium perfringens ATCC 13124 4202199 YP_696400.1 CDS ffh NC_008261.1 2205098 2206456 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(2205098..2206456) Clostridium perfringens ATCC 13124 4201548 YP_696401.1 CDS CPF_1968 NC_008261.1 2206468 2206806 R identified by match to protein family HMM PF04297; DNA-binding protein complement(2206468..2206806) Clostridium perfringens ATCC 13124 4201885 YP_696402.1 CDS ftsY NC_008261.1 2206981 2207895 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(2206981..2207895) Clostridium perfringens ATCC 13124 4203850 YP_696403.1 CDS smc NC_008261.1 2207909 2211466 R identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC complement(2207909..2211466) Clostridium perfringens ATCC 13124 4202121 YP_696404.1 CDS CPF_1971 NC_008261.1 2211671 2212744 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2211671..2212744) Clostridium perfringens ATCC 13124 4201767 YP_696405.1 CDS rnc NC_008261.1 2212723 2213448 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2212723..2213448) Clostridium perfringens ATCC 13124 4202318 YP_696406.1 CDS acpP NC_008261.1 2213535 2213765 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2213535..2213765) Clostridium perfringens ATCC 13124 4203057 YP_696407.1 CDS plsX NC_008261.1 2213842 2214861 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2213842..2214861) Clostridium perfringens ATCC 13124 4203317 YP_696408.1 CDS rpmF NC_008261.1 2214919 2215101 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2214919..2215101) Clostridium perfringens ATCC 13124 4201983 YP_696409.1 CDS CPF_1976 NC_008261.1 2215117 2215611 R identified by similarity to GB:AAB18302.1; match to protein family HMM PF02620; hypothetical protein complement(2215117..2215611) Clostridium perfringens ATCC 13124 4203405 YP_696410.1 CDS ackA NC_008261.1 2215731 2216927 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2215731..2216927) Clostridium perfringens ATCC 13124 4202494 YP_696411.1 CDS eutD NC_008261.1 2217018 2218019 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2217018..2218019) Clostridium perfringens ATCC 13124 4203179 YP_696412.1 CDS CPF_1979 NC_008261.1 2218254 2219462 D identified by similarity to PIR:H97114; match to protein family HMM PF05636; hypothetical protein 2218254..2219462 Clostridium perfringens ATCC 13124 4201930 YP_696413.1 CDS ylbJ NC_008261.1 2219527 2220687 D identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871; sporulation integral membrane protein YlbJ 2219527..2220687 Clostridium perfringens ATCC 13124 4203367 YP_696414.1 CDS CPF_1980 NC_008261.1 2220670 2221200 R identified by similarity to GB:AAO35803.1; hypothetical protein complement(2220670..2221200) Clostridium perfringens ATCC 13124 4203633 YP_696415.1 CDS coaD NC_008261.1 2221209 2221703 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2221209..2221703) Clostridium perfringens ATCC 13124 4202716 YP_696416.1 CDS CPF_1983 NC_008261.1 2221705 2222262 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase complement(2221705..2222262) Clostridium perfringens ATCC 13124 4201669 YP_696417.1 CDS recG NC_008261.1 2222327 2224399 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2222327..2224399) Clostridium perfringens ATCC 13124 4202665 YP_696418.1 CDS CPF_1985 NC_008261.1 2224553 2226199 R identified by match to protein family HMM PF02734; DAK2 domain-containing protein complement(2224553..2226199) Clostridium perfringens ATCC 13124 4203653 YP_696419.1 CDS CPF_1986 NC_008261.1 2226213 2226560 R identified by similarity to GB:AAO35798.1; match to protein family HMM PF03780; hypothetical protein complement(2226213..2226560) Clostridium perfringens ATCC 13124 4201379 YP_696420.1 CDS rpmB NC_008261.1 2226820 2227011 D required for 70S ribosome assembly; 50S ribosomal protein L28 2226820..2227011 Clostridium perfringens ATCC 13124 4202612 YP_696421.1 CDS CPF_1988 NC_008261.1 2227254 2227883 R identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase complement(2227254..2227883) Clostridium perfringens ATCC 13124 4201733 YP_696422.1 CDS rpe NC_008261.1 2227885 2228538 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(2227885..2228538) Clostridium perfringens ATCC 13124 4202411 YP_696423.1 CDS rsgA NC_008261.1 2228538 2229401 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(2228538..2229401) Clostridium perfringens ATCC 13124 4202618 YP_696424.1 CDS CPF_1991 NC_008261.1 2229638 2231716 R identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714; protein kinase complement(2229638..2231716) Clostridium perfringens ATCC 13124 4201856 YP_696425.1 CDS CPF_1992 NC_008261.1 2231718 2232437 R identified by match to protein family HMM PF00481; protein phosphatase 2C complement(2231718..2232437) Clostridium perfringens ATCC 13124 4201903 YP_696426.1 CDS CPF_1993 NC_008261.1 2232450 2233493 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2232450..2233493) Clostridium perfringens ATCC 13124 4201008 YP_696427.1 CDS sun NC_008261.1 2233525 2234853 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B complement(2233525..2234853) Clostridium perfringens ATCC 13124 4202361 YP_696428.1 CDS CPF_1995 NC_008261.1 2234864 2235559 R identified by match to protein family HMM PF04298; neutral zinc metallopeptidase complement(2234864..2235559) Clostridium perfringens ATCC 13124 4200990 YP_696429.1 CDS fmt NC_008261.1 2235577 2236506 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(2235577..2236506) Clostridium perfringens ATCC 13124 4203921 YP_696430.1 CDS def NC_008261.1 2236526 2236969 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2236526..2236969) Clostridium perfringens ATCC 13124 4203791 YP_696431.1 CDS priA NC_008261.1 2236983 2239178 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(2236983..2239178) Clostridium perfringens ATCC 13124 4201469 YP_696432.1 CDS coaBC NC_008261.1 2239217 2240404 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2239217..2240404) Clostridium perfringens ATCC 13124 4201801 YP_696433.1 CDS rpoZ NC_008261.1 2240410 2240622 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2240410..2240622) Clostridium perfringens ATCC 13124 4203913 YP_696434.1 CDS gmk NC_008261.1 2240603 2241253 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(2240603..2241253) Clostridium perfringens ATCC 13124 4201124 YP_696435.1 CDS CPF_2002 NC_008261.1 2241243 2241512 R identified by similarity to SP:Q97ID1; match to protein family HMM PF04025; hypothetical protein complement(2241243..2241512) Clostridium perfringens ATCC 13124 4202272 YP_696436.1 CDS CPF_2003 NC_008261.1 2241526 2242410 R identified by similarity to GB:AAO35784.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein complement(2241526..2242410) Clostridium perfringens ATCC 13124 4203398 YP_696437.1 CDS CPF_2004 NC_008261.1 2242630 2244027 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease complement(2242630..2244027) Clostridium perfringens ATCC 13124 4202988 YP_696438.1 CDS CPF_2005 NC_008261.1 2244285 2245268 R identified by match to protein family HMM PF00710; L-asparaginase complement(2244285..2245268) Clostridium perfringens ATCC 13124 4202077 YP_696439.1 CDS spoIVA NC_008261.1 2245619 2247094 R identified by similarity to SP:P35149; match to protein family HMM TIGR02836; stage IV sporulation protein A complement(2245619..2247094) Clostridium perfringens ATCC 13124 4202595 YP_696440.1 CDS gpsA NC_008261.1 2247427 2248422 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2247427..2248422) Clostridium perfringens ATCC 13124 4202431 YP_696441.1 CDS engA NC_008261.1 2248427 2249743 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2248427..2249743) Clostridium perfringens ATCC 13124 4202478 YP_696442.1 CDS CPF_2009 NC_008261.1 2249746 2251083 R identified by similarity to PIR:A97111; match to protein family HMM PF04459; hypothetical protein complement(2249746..2251083) Clostridium perfringens ATCC 13124 4203764 YP_696443.1 CDS CPF_2010 NC_008261.1 2251410 2253125 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(2251410..2253125) Clostridium perfringens ATCC 13124 4203230 YP_696444.1 CDS CPF_2011 NC_008261.1 2253139 2253843 R identified by similarity to PIR:F97109; match to protein family HMM PF02578; hypothetical protein complement(2253139..2253843) Clostridium perfringens ATCC 13124 4202468 YP_696445.1 CDS nrdR NC_008261.1 2254009 2254458 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(2254009..2254458) Clostridium perfringens ATCC 13124 4201732 YP_696446.1 CDS CPF_2013 NC_008261.1 2254520 2254792 R identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein complement(2254520..2254792) Clostridium perfringens ATCC 13124 4202814 YP_696447.1 CDS sigG NC_008261.1 2254933 2255706 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(2254933..2255706) Clostridium perfringens ATCC 13124 4203644 YP_696448.1 CDS sigE NC_008261.1 2255781 2256488 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(2255781..2256488) Clostridium perfringens ATCC 13124 4202170 YP_696449.1 CDS spoIIGA NC_008261.1 2256502 2257308 R identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854; sporulation factor SpoIIGA complement(2256502..2257308) Clostridium perfringens ATCC 13124 4203196 YP_696450.1 CDS CPF_2017 NC_008261.1 2257346 2257540 R hypothetical protein complement(2257346..2257540) Clostridium perfringens ATCC 13124 4203539 YP_696451.1 CDS ftsZ NC_008261.1 2257713 2258858 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2257713..2258858) Clostridium perfringens ATCC 13124 4203375 YP_696452.1 CDS ftsA NC_008261.1 2258872 2260110 R identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(2258872..2260110) Clostridium perfringens ATCC 13124 4201706 YP_696453.1 CDS pilT NC_008261.1 2260188 2261240 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT complement(2260188..2261240) Clostridium perfringens ATCC 13124 4203420 YP_696454.1 CDS CPF_2021 NC_008261.1 2261421 2262122 R sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK complement(2261421..2262122) Clostridium perfringens ATCC 13124 4203096 YP_696455.1 CDS CPF_2022 NC_008261.1 2262185 2263852 R identified by match to protein family HMM PF00905; penicillin-binding protein complement(2262185..2263852) Clostridium perfringens ATCC 13124 4203556 YP_696456.1 CDS udk NC_008261.1 2263965 2264591 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2263965..2264591) Clostridium perfringens ATCC 13124 4203237 YP_696457.1 CDS CPF_2024 NC_008261.1 2264591 2265820 R identified by match to protein family HMM PF01136; U32 family peptidase complement(2264591..2265820) Clostridium perfringens ATCC 13124 4203066 YP_696458.1 CDS CPF_2025 NC_008261.1 2265826 2266470 R identified by match to protein family HMM PF01596; O-methyltransferase complement(2265826..2266470) Clostridium perfringens ATCC 13124 4201692 YP_696459.1 CDS CPF_2026 NC_008261.1 2266486 2267487 R identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(2266486..2267487) Clostridium perfringens ATCC 13124 4202756 YP_696460.1 CDS typA NC_008261.1 2267657 2269489 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(2267657..2269489) Clostridium perfringens ATCC 13124 4202703 YP_696461.1 CDS CPF_2028 NC_008261.1 2269646 2271313 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolising metallo-beta-lactamase complement(2269646..2271313) Clostridium perfringens ATCC 13124 4201536 YP_696462.1 CDS CPF_2029 NC_008261.1 2271384 2271836 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(2271384..2271836) Clostridium perfringens ATCC 13124 4202006 YP_696463.1 CDS CPF_2030 NC_008261.1 2271857 2272111 R identified by similarity to PIR:D97107; match to protein family HMM PF06949; hypothetical protein complement(2271857..2272111) Clostridium perfringens ATCC 13124 4203216 YP_696464.1 CDS CPF_2031 NC_008261.1 2272127 2272540 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2272127..2272540) Clostridium perfringens ATCC 13124 4202810 YP_696465.1 CDS CPF_2032 NC_008261.1 2272588 2272845 R identified by similarity to SP:Q97IG2; match to protein family HMM PF06135; hypothetical protein complement(2272588..2272845) Clostridium perfringens ATCC 13124 4201197 YP_696466.1 CDS alaS NC_008261.1 2272989 2275628 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2272989..2275628) Clostridium perfringens ATCC 13124 4201044 YP_696467.1 CDS CPF_2036 NC_008261.1 2277134 2277616 R identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein complement(2277134..2277616) Clostridium perfringens ATCC 13124 4202368 YP_696468.1 CDS mnmA NC_008261.1 2277896 2278975 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2277896..2278975) Clostridium perfringens ATCC 13124 4203221 YP_696469.1 CDS nifU NC_008261.1 2279000 2279428 R identified by match to protein family HMM PF01592; FeS cluster assembly scaffold protein NifU complement(2279000..2279428) Clostridium perfringens ATCC 13124 4202204 YP_696470.1 CDS iscS NC_008261.1 2279431 2280627 R identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(2279431..2280627) Clostridium perfringens ATCC 13124 4202521 YP_696471.1 CDS CPF_2040 NC_008261.1 2280620 2281081 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein complement(2280620..2281081) Clostridium perfringens ATCC 13124 4202102 YP_696472.1 CDS CPF_2043 NC_008261.1 2282660 2283529 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2282660..2283529) Clostridium perfringens ATCC 13124 4202148 YP_696473.1 CDS CPF_2044 NC_008261.1 2283744 2284172 R identified by match to protein family HMM PF03473; MOSC domain-containing protein complement(2283744..2284172) Clostridium perfringens ATCC 13124 4202890 YP_696474.1 CDS moaA NC_008261.1 2284175 2285146 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(2284175..2285146) Clostridium perfringens ATCC 13124 4201478 YP_696475.1 CDS CPF_2046 NC_008261.1 2285250 2286263 R identified by match to protein family HMM PF00994; molybdenum cofactor biosynthesis protein complement(2285250..2286263) Clostridium perfringens ATCC 13124 4202071 YP_696476.1 CDS CPF_2047 NC_008261.1 2286381 2286977 R identified by similarity to SP:Q9WX94; molybdopterin-guanine dinucleotide biosynthesis protein complement(2286381..2286977) Clostridium perfringens ATCC 13124 4203918 YP_696477.1 CDS moeA NC_008261.1 2287022 2288242 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein MoeA complement(2287022..2288242) Clostridium perfringens ATCC 13124 4202224 YP_696478.1 CDS mobB NC_008261.1 2288581 2289051 R identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2288581..2289051) Clostridium perfringens ATCC 13124 4202331 YP_696479.1 CDS noxA NC_008261.1 2289139 2290362 R identified by similarity to GB:BAA74793.1; match to protein family HMM PF00070; match to protein family HMM PF07992; nitrate reductase, NADH oxidase subunit complement(2289139..2290362) Clostridium perfringens ATCC 13124 4203540 YP_696480.1 CDS narB NC_008261.1 2290364 2290777 R identified by match to protein family HMM PF00037; nitrate reductase electron transfer subunit complement(2290364..2290777) Clostridium perfringens ATCC 13124 4203502 YP_696481.1 CDS narA NC_008261.1 2290790 2292868 R identified by similarity to GB:BAA74791.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; nitrate reductase, catalytic subunit complement(2290790..2292868) Clostridium perfringens ATCC 13124 4201663 YP_696482.1 CDS CPF_2053 NC_008261.1 2293154 2293582 R identified by similarity to GB:CAB13916.1; hypothetical protein complement(2293154..2293582) Clostridium perfringens ATCC 13124 4202760 YP_696483.1 CDS CPF_2054 NC_008261.1 2293804 2295081 R identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; FAD dependent oxidoreductase complement(2293804..2295081) Clostridium perfringens ATCC 13124 4203659 YP_696484.1 CDS CPF_2055 NC_008261.1 2295113 2296093 R identified by similarity to SP:P25983; hypothetical protein complement(2295113..2296093) Clostridium perfringens ATCC 13124 4202265 YP_696485.1 CDS CPF_2056 NC_008261.1 2296338 2297213 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2296338..2297213) Clostridium perfringens ATCC 13124 4201406 YP_696486.1 CDS CPF_2057 NC_008261.1 2297361 2297933 D identified by similarity to GB:AAO36077.1; hypothetical protein 2297361..2297933 Clostridium perfringens ATCC 13124 4201204 YP_696487.1 CDS CPF_2058 NC_008261.1 2297980 2298399 D identified by similarity to GB:AAO36078.1; match to protein family HMM TIGR02874; hypothetical protein 2297980..2298399 Clostridium perfringens ATCC 13124 4201043 YP_696488.1 CDS scpB NC_008261.1 2298728 2299315 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(2298728..2299315) Clostridium perfringens ATCC 13124 4201482 YP_696489.1 CDS scpA NC_008261.1 2299308 2300054 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(2299308..2300054) Clostridium perfringens ATCC 13124 4203617 YP_696490.1 CDS dacF NC_008261.1 2300325 2301533 R identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase complement(2300325..2301533) Clostridium perfringens ATCC 13124 4202634 YP_696491.1 CDS pdp NC_008261.1 2301785 2303086 R identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase complement(2301785..2303086) Clostridium perfringens ATCC 13124 4203206 YP_696492.1 CDS xerD NC_008261.1 2303333 2304205 R identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD complement(2303333..2304205) Clostridium perfringens ATCC 13124 4202821 YP_696493.1 CDS CPF_2064 NC_008261.1 2304255 2304875 R identified by similarity to SP:P37873; match to protein family HMM TIGR02831; sporulation protein complement(2304255..2304875) Clostridium perfringens ATCC 13124 4202741 YP_696494.1 CDS CPF_2065 NC_008261.1 2305009 2305539 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(2305009..2305539) Clostridium perfringens ATCC 13124 4203030 YP_696495.1 CDS CPF_2066 NC_008261.1 2305601 2305906 R hypothetical protein complement(2305601..2305906) Clostridium perfringens ATCC 13124 4201845 YP_696496.1 CDS spo0A NC_008261.1 2305983 2306813 R identified by similarity to GB:CAB87985.1; match to protein family HMM PF00072; match to protein family HMM TIGR02875; Spo0A protein complement(2305983..2306813) Clostridium perfringens ATCC 13124 4202545 YP_696497.1 CDS CPF_2068 NC_008261.1 2306987 2308147 R identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860; stage IV sporulation protein B complement(2306987..2308147) Clostridium perfringens ATCC 13124 4201670 YP_696498.1 CDS recN NC_008261.1 2308324 2310021 R identified by similarity to SP:P17894; match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(2308324..2310021) Clostridium perfringens ATCC 13124 4203944 YP_696499.1 CDS argR NC_008261.1 2310037 2310489 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(2310037..2310489) Clostridium perfringens ATCC 13124 4202144 YP_696500.1 CDS CPF_2071 NC_008261.1 2310512 2311342 R identified by match to protein family HMM PF01513; NAD(+)/NADH kinase complement(2310512..2311342) Clostridium perfringens ATCC 13124 4201141 YP_696501.1 CDS CPF_2072 NC_008261.1 2311427 2312242 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(2311427..2312242) Clostridium perfringens ATCC 13124 4201828 YP_696502.1 CDS dxs NC_008261.1 2312254 2314113 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(2312254..2314113) Clostridium perfringens ATCC 13124 4201328 YP_696503.1 CDS ispA NC_008261.1 2314134 2315006 R identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase complement(2314134..2315006) Clostridium perfringens ATCC 13124 4202496 YP_696504.1 CDS xseB NC_008261.1 2314996 2315223 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(2314996..2315223) Clostridium perfringens ATCC 13124 4202924 YP_696505.1 CDS xseA NC_008261.1 2315242 2316444 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2315242..2316444) Clostridium perfringens ATCC 13124 4202794 YP_696506.1 CDS folD NC_008261.1 2316446 2317279 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2316446..2317279) Clostridium perfringens ATCC 13124 4202377 YP_696507.1 CDS nusB NC_008261.1 2317328 2317735 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(2317328..2317735) Clostridium perfringens ATCC 13124 4201027 YP_696508.1 CDS asp NC_008261.1 2317854 2318243 R identified by similarity to SP:Q53485; match to protein family HMM PF03780; alkaline shock protein complement(2317854..2318243) Clostridium perfringens ATCC 13124 4202896 YP_696509.1 CDS spoIIIAH NC_008261.1 2318328 2318825 R stage III sporulation protein AH complement(2318328..2318825) Clostridium perfringens ATCC 13124 4202684 YP_696510.1 CDS CPF_2081 NC_008261.1 2318851 2319456 R identified by match to protein family HMM TIGR02830; stage III sporulation protein AG complement(2318851..2319456) Clostridium perfringens ATCC 13124 4202141 YP_696511.1 CDS spoIIIAF NC_008261.1 2319471 2320028 R identified by match to protein family HMM TIGR02896; stage III sporulation protein AF complement(2319471..2320028) Clostridium perfringens ATCC 13124 4203919 YP_696512.1 CDS CPF_2083 NC_008261.1 2320036 2321208 R identified by match to protein family HMM TIGR02829; stage III sporulation protein AE complement(2320036..2321208) Clostridium perfringens ATCC 13124 4201358 YP_696513.1 CDS CPF_2084 NC_008261.1 2321219 2321605 R identified by match to protein family HMM TIGR02849; stage III sporulation protein AD complement(2321219..2321605) Clostridium perfringens ATCC 13124 4202591 YP_696514.1 CDS CPF_2085 NC_008261.1 2321693 2321890 R identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848; stage III sporulation protein AC complement(2321693..2321890) Clostridium perfringens ATCC 13124 4201696 YP_696515.1 CDS CPF_2086 NC_008261.1 2321966 2322481 R necessary for complete engulfment of forespore; stage III sporulation protein SpoAB complement(2321966..2322481) Clostridium perfringens ATCC 13124 4203649 YP_696516.1 CDS CPF_2087 NC_008261.1 2322628 2323512 R identified by match to protein family HMM TIGR02858; stage III sporulation protein AA complement(2322628..2323512) Clostridium perfringens ATCC 13124 4201772 YP_696517.1 CDS CPF_2088 NC_008261.1 2323710 2324072 R hypothetical protein complement(2323710..2324072) Clostridium perfringens ATCC 13124 4200946 YP_696518.1 CDS efp NC_008261.1 2324186 2324743 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2324186..2324743) Clostridium perfringens ATCC 13124 4201848 YP_696519.1 CDS CPF_2090 NC_008261.1 2324914 2325261 R hypothetical protein complement(2324914..2325261) Clostridium perfringens ATCC 13124 4201056 YP_696520.1 CDS CPF_2091 NC_008261.1 2325258 2325698 R hypothetical protein complement(2325258..2325698) Clostridium perfringens ATCC 13124 4203379 YP_696521.1 CDS CPF_2092 NC_008261.1 2325658 2326275 R hypothetical protein complement(2325658..2326275) Clostridium perfringens ATCC 13124 4201187 YP_696522.1 CDS CPF_2093 NC_008261.1 2326244 2326654 R type IV pilin complement(2326244..2326654) Clostridium perfringens ATCC 13124 4201440 YP_696523.1 CDS CPF_2094 NC_008261.1 2326641 2327012 R hypothetical protein complement(2326641..2327012) Clostridium perfringens ATCC 13124 4203014 YP_696524.1 CDS CPF_2095 NC_008261.1 2327072 2327584 R hypothetical protein complement(2327072..2327584) Clostridium perfringens ATCC 13124 4202510 YP_696525.1 CDS CPF_2096 NC_008261.1 2327604 2328032 R identified by match to protein family HMM TIGR02532; type IV pilin complement(2327604..2328032) Clostridium perfringens ATCC 13124 4201057 YP_696526.1 CDS CPF_2097 NC_008261.1 2328025 2329044 R identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482; pilus biogenesis protein complement(2328025..2329044) Clostridium perfringens ATCC 13124 4201144 YP_696527.1 CDS CPF_2098 NC_008261.1 2329031 2330419 R identified by match to protein family HMM PF00437; pilus biogenesis protein complement(2329031..2330419) Clostridium perfringens ATCC 13124 4201002 YP_696528.1 CDS CPF_2099 NC_008261.1 2330518 2331549 R lipoprotein complement(2330518..2331549) Clostridium perfringens ATCC 13124 4203720 YP_696529.1 CDS dapF NC_008261.1 2331566 2332384 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(2331566..2332384) Clostridium perfringens ATCC 13124 4201532 YP_696530.1 CDS CPF_2101 NC_008261.1 2332476 2334203 D identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 2332476..2334203 Clostridium perfringens ATCC 13124 4203362 YP_696531.1 CDS CPF_2102 NC_008261.1 2334314 2335441 R identified by match to protein family HMM PF01170; methyltransferase complement(2334314..2335441) Clostridium perfringens ATCC 13124 4201194 YP_696532.1 CDS pyrR NC_008261.1 2335461 2335997 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(2335461..2335997) Clostridium perfringens ATCC 13124 4202069 YP_696533.1 CDS CPF_2104 NC_008261.1 2336001 2336921 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(2336001..2336921) Clostridium perfringens ATCC 13124 4203246 YP_696534.1 CDS CPF_2105 NC_008261.1 2337059 2337685 R identified by match to protein family HMM PF05103; cell division protein DivIVA complement(2337059..2337685) Clostridium perfringens ATCC 13124 4201606 YP_696535.1 CDS CPF_2106 NC_008261.1 2337698 2338459 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(2337698..2338459) Clostridium perfringens ATCC 13124 4203567 YP_696536.1 CDS CPF_2107 NC_008261.1 2338461 2338910 R identified by similarity to PIR:C97161; match to protein family HMM PF04472; hypothetical protein complement(2338461..2338910) Clostridium perfringens ATCC 13124 4202325 YP_696537.1 CDS CPF_2108 NC_008261.1 2338929 2339588 R identified by similarity to GB:AAO36167.1; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(2338929..2339588) Clostridium perfringens ATCC 13124 4201468 YP_696538.1 CDS CPF_2109 NC_008261.1 2339688 2340419 R identified by similarity to GB:AAO36168.1; match to protein family HMM PF05949; hypothetical protein complement(2339688..2340419) Clostridium perfringens ATCC 13124 4201092 YP_696539.1 CDS sbp NC_008261.1 2340432 2340770 R identified by similarity to SP:P28265; match to protein family HMM PF06947; small basic protein complement(2340432..2340770) Clostridium perfringens ATCC 13124 4203670 YP_696540.1 CDS CPF_2111 NC_008261.1 2340783 2341499 R identified by similarity to GB:AAO36170.1; match to protein family HMM PF05949; hypothetical protein complement(2340783..2341499) Clostridium perfringens ATCC 13124 4202491 YP_696541.1 CDS CPF_2112 NC_008261.1 2341513 2342259 R cell division protein FtsQ complement(2341513..2342259) Clostridium perfringens ATCC 13124 4203370 YP_696542.1 CDS spoVE NC_008261.1 2342417 2343541 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615; stage V sporulation protein E complement(2342417..2343541) Clostridium perfringens ATCC 13124 4202349 YP_696543.1 CDS mraY NC_008261.1 2343569 2344540 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2343569..2344540) Clostridium perfringens ATCC 13124 4202574 YP_696544.1 CDS murF NC_008261.1 2344590 2345951 R identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2344590..2345951) Clostridium perfringens ATCC 13124 4201030 YP_696545.1 CDS murE NC_008261.1 2345964 2347418 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2345964..2347418) Clostridium perfringens ATCC 13124 4201959 YP_696546.2 CDS spoVD NC_008261.1 2347513 2349732 R identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D complement(2347513..2349732) Clostridium perfringens ATCC 13124 4202985 YP_696547.1 CDS CPF_2118 NC_008261.1 2349920 2350348 R cell division protein FtsL complement(2349920..2350348) Clostridium perfringens ATCC 13124 4201528 YP_696548.1 CDS mraW NC_008261.1 2350420 2351352 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(2350420..2351352) Clostridium perfringens ATCC 13124 4201179 YP_696549.1 CDS ychF NC_008261.1 2351900 2352997 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2351900..2352997) Clostridium perfringens ATCC 13124 4203404 YP_696550.1 CDS pdaA NC_008261.1 2353156 2353953 D identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884; delta-lactam-biosynthetic de-N-acetylase 2353156..2353953 Clostridium perfringens ATCC 13124 4201890 YP_696551.1 CDS CPF_2123 NC_008261.1 2354132 2354767 R identified by match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase complement(2354132..2354767) Clostridium perfringens ATCC 13124 4203342 YP_696552.1 CDS CPF_2124 NC_008261.1 2354796 2356082 R hypothetical protein complement(2354796..2356082) Clostridium perfringens ATCC 13124 4202463 YP_696553.1 CDS CPF_2125 NC_008261.1 2356082 2356798 R identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase complement(2356082..2356798) Clostridium perfringens ATCC 13124 4203224 YP_696554.1 CDS CPF_2126 NC_008261.1 2356814 2357911 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(2356814..2357911) Clostridium perfringens ATCC 13124 4202264 YP_696555.1 CDS CPF_2127 NC_008261.1 2358203 2359930 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(2358203..2359930) Clostridium perfringens ATCC 13124 4202405 YP_696556.1 CDS CPF_2128 NC_008261.1 2360086 2360694 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2360086..2360694) Clostridium perfringens ATCC 13124 4201090 YP_696557.1 CDS CPF_2129 NC_008261.1 2360831 2365270 R identified by match to protein family HMM PF00041; fibronectin type III complement(2360831..2365270) Clostridium perfringens ATCC 13124 4200982 YP_696558.1 CDS CPF_2130 NC_008261.1 2365428 2368226 R identified by match to protein family HMM PF00754; match to protein family HMM PF03160; calx-beta domain-containing protein complement(2365428..2368226) Clostridium perfringens ATCC 13124 4201342 YP_696559.1 CDS CPF_2131 NC_008261.1 2368450 2369166 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(2368450..2369166) Clostridium perfringens ATCC 13124 4203657 YP_696560.1 CDS CPF_2132 NC_008261.1 2369170 2370192 R identified by match to protein family HMM PF01070; match to protein family HMM PF01791; FMN-dependent dehydrogenase complement(2369170..2370192) Clostridium perfringens ATCC 13124 4201981 YP_696561.1 CDS CPF_2133 NC_008261.1 2370206 2370649 R identified by similarity to GB:AAO36753.1; match to protein family HMM PF04463; hypothetical protein complement(2370206..2370649) Clostridium perfringens ATCC 13124 4203876 YP_696562.1 CDS spoVD NC_008261.1 2370888 2373071 R identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D complement(2370888..2373071) Clostridium perfringens ATCC 13124 4201446 YP_696563.1 CDS CPF_2135 NC_008261.1 2373335 2375695 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(2373335..2375695) Clostridium perfringens ATCC 13124 4202050 YP_696564.1 CDS CPF_2136 NC_008261.1 2375709 2378060 R identified by match to protein family HMM PF01136; U32 family peptidase complement(2375709..2378060) Clostridium perfringens ATCC 13124 4201046 YP_696565.1 CDS CPF_2137 NC_008261.1 2378459 2379247 D identified by similarity to SP:Q02150; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 2378459..2379247 Clostridium perfringens ATCC 13124 4203930 YP_696566.1 CDS CPF_2138 NC_008261.1 2379538 2380893 R hypothetical protein complement(2379538..2380893) Clostridium perfringens ATCC 13124 4202023 YP_696567.1 CDS pheT NC_008261.1 2380974 2383355 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2380974..2383355) Clostridium perfringens ATCC 13124 4203542 YP_696568.1 CDS pheS NC_008261.1 2383379 2384398 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2383379..2384398) Clostridium perfringens ATCC 13124 4201609 YP_696569.1 CDS CPF_2141 NC_008261.1 2385010 2385783 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase complement(2385010..2385783) Clostridium perfringens ATCC 13124 4203441 YP_696570.1 CDS CPF_2142 NC_008261.1 2385809 2386474 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein complement(2385809..2386474) Clostridium perfringens ATCC 13124 4202680 YP_696571.1 CDS CPF_2143 NC_008261.1 2386497 2387837 R identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein complement(2386497..2387837) Clostridium perfringens ATCC 13124 4201844 YP_696572.1 CDS rplT NC_008261.1 2388066 2388425 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2388066..2388425) Clostridium perfringens ATCC 13124 4201558 YP_696573.1 CDS rpmI NC_008261.1 2388455 2388652 R identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(2388455..2388652) Clostridium perfringens ATCC 13124 4201629 YP_696574.1 CDS infC NC_008261.1 2388674 2389195 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(2388674..2389195) Clostridium perfringens ATCC 13124 4203440 YP_696575.1 CDS ytxC NC_008261.1 2389476 2390354 R identified by similarity to PIR:D97191; match to protein family HMM TIGR02834; sporulation protein YtxC complement(2389476..2390354) Clostridium perfringens ATCC 13124 4201225 YP_696576.1 CDS CPF_2148 NC_008261.1 2390489 2391184 D identified by similarity to PIR:E97191; hypothetical protein 2390489..2391184 Clostridium perfringens ATCC 13124 4202024 YP_696577.1 CDS CPF_2149 NC_008261.1 2391439 2392419 D identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase 2391439..2392419 Clostridium perfringens ATCC 13124 4203079 YP_696578.1 CDS CPF_2150 NC_008261.1 2392552 2393106 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(2392552..2393106) Clostridium perfringens ATCC 13124 4201120 YP_696579.1 CDS CPF_2151 NC_008261.1 2393271 2393825 R hypothetical protein complement(2393271..2393825) Clostridium perfringens ATCC 13124 4201942 YP_696580.1 CDS CPF_2152 NC_008261.1 2394125 2394502 D hypothetical protein 2394125..2394502 Clostridium perfringens ATCC 13124 4203548 YP_696581.1 CDS hslO NC_008261.1 2394983 2395942 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(2394983..2395942) Clostridium perfringens ATCC 13124 4201206 YP_696582.1 CDS CPF_2158 NC_008261.1 2395958 2396695 R identified by similarity to GB:AAS43311.1; hypothetical protein complement(2395958..2396695) Clostridium perfringens ATCC 13124 4201633 YP_696583.1 CDS CPF_2159 NC_008261.1 2396747 2397019 R small acid-soluble spore protein complement(2396747..2397019) Clostridium perfringens ATCC 13124 4201963 YP_696584.1 CDS asd NC_008261.1 2397221 2398198 D identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 2397221..2398198 Clostridium perfringens ATCC 13124 4202056 YP_696585.1 CDS dapA NC_008261.1 2398223 2399098 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2398223..2399098 Clostridium perfringens ATCC 13124 4203415 YP_696586.1 CDS dapB NC_008261.1 2399171 2399935 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2399171..2399935 Clostridium perfringens ATCC 13124 4203611 YP_696587.1 CDS CPF_2163 NC_008261.1 2400229 2401371 R identified by match to protein family HMM PF00155; aminotransferase, classes I and II complement(2400229..2401371) Clostridium perfringens ATCC 13124 4203143 YP_696588.1 CDS CPF_2164 NC_008261.1 2401371 2401907 R identified by match to protein family HMM PF02572; cob(I)alamin adenosyltransferase complement(2401371..2401907) Clostridium perfringens ATCC 13124 4202311 YP_696589.1 CDS CPF_2165 NC_008261.1 2402101 2402811 D identified by match to protein family HMM PF00132; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2402101..2402811 Clostridium perfringens ATCC 13124 4203595 YP_696590.1 CDS CPF_2166 NC_008261.1 2402861 2403517 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2402861..2403517) Clostridium perfringens ATCC 13124 4202092 YP_696591.1 CDS CPF_2167 NC_008261.1 2403633 2404409 R identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764; polysaccharide deacetylase complement(2403633..2404409) Clostridium perfringens ATCC 13124 4201015 YP_696592.1 CDS CPF_2168 NC_008261.1 2404517 2405047 D identified by similarity to PIR:A97194; hypothetical protein 2404517..2405047 Clostridium perfringens ATCC 13124 4203861 YP_696593.1 CDS CPF_2169 NC_008261.1 2405113 2406219 D identified by match to protein family HMM PF01594; hypothetical protein 2405113..2406219 Clostridium perfringens ATCC 13124 4202528 YP_696594.1 CDS CPF_2170 NC_008261.1 2406391 2407812 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 2406391..2407812 Clostridium perfringens ATCC 13124 4202585 YP_696595.1 CDS hlyIII NC_008261.1 2407867 2408508 R identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(2407867..2408508) Clostridium perfringens ATCC 13124 4201300 YP_696596.1 CDS CPF_2172 NC_008261.1 2408634 2409128 D identified by similarity to GB:AAN53875.1; match to protein family HMM PF06172; hypothetical protein 2408634..2409128 Clostridium perfringens ATCC 13124 4201366 YP_696597.1 CDS CPF_2173 NC_008261.1 2409240 2410799 R identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein complement(2409240..2410799) Clostridium perfringens ATCC 13124 4202329 YP_696598.1 CDS folC NC_008261.1 2410910 2412235 R identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2410910..2412235) Clostridium perfringens ATCC 13124 4201702 YP_696599.1 CDS valS NC_008261.1 2412522 2415164 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2412522..2415164) Clostridium perfringens ATCC 13124 4203131 YP_696600.1 CDS CPF_2176 NC_008261.1 2415821 2416171 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2415821..2416171 Clostridium perfringens ATCC 13124 4203212 YP_696601.1 CDS CPF_2177 NC_008261.1 2416377 2417552 R identified by match to protein family HMM PF01841; transglutaminase domain-containing protein complement(2416377..2417552) Clostridium perfringens ATCC 13124 4202229 YP_696602.1 CDS recX NC_008261.1 2417558 2418196 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2417558..2418196) Clostridium perfringens ATCC 13124 4201259 YP_696603.1 CDS CPF_2179 NC_008261.1 2418202 2419446 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(2418202..2419446) Clostridium perfringens ATCC 13124 4203191 YP_696604.1 CDS CPF_2180 NC_008261.1 2419541 2420212 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2419541..2420212 Clostridium perfringens ATCC 13124 4202937 YP_696605.1 CDS CPF_2181 NC_008261.1 2420212 2421735 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2420212..2421735 Clostridium perfringens ATCC 13124 4202690 YP_696606.1 CDS fabG NC_008261.1 2421988 2422734 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2421988..2422734) Clostridium perfringens ATCC 13124 4202482 YP_696607.1 CDS CPF_2183 NC_008261.1 2422840 2423802 R identified by match to protein family HMM PF01244; dipeptidase complement(2422840..2423802) Clostridium perfringens ATCC 13124 4203860 YP_696608.1 CDS glyA NC_008261.1 2424050 2425282 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2424050..2425282) Clostridium perfringens ATCC 13124 4203783 YP_696609.1 CDS CPF_2185 NC_008261.1 2425462 2426232 D identified by similarity to PIR:B89847; match to protein family HMM PF06738; hypothetical protein 2425462..2426232 Clostridium perfringens ATCC 13124 4203053 YP_696610.1 CDS CPF_2186 NC_008261.1 2426233 2426754 D identified by similarity to GB:AAO36791.1; hypothetical protein 2426233..2426754 Clostridium perfringens ATCC 13124 4203325 YP_696611.1 CDS CPF_2187 NC_008261.1 2426772 2427044 R identified by similarity to PIR:F97179; match to protein family HMM PF02583; hypothetical protein complement(2426772..2427044) Clostridium perfringens ATCC 13124 4201490 YP_696612.1 CDS aspS NC_008261.1 2427330 2429123 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2427330..2429123) Clostridium perfringens ATCC 13124 4201595 YP_696613.1 CDS hisS NC_008261.1 2429144 2430391 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2429144..2430391) Clostridium perfringens ATCC 13124 4201377 YP_696614.1 CDS CPF_2190 NC_008261.1 2430423 2431865 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2430423..2431865) Clostridium perfringens ATCC 13124 4203305 YP_696615.1 CDS CPF_2191 NC_008261.1 2431855 2432475 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(2431855..2432475) Clostridium perfringens ATCC 13124 4203831 YP_696616.1 CDS dtd NC_008261.1 2432635 2433084 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(2432635..2433084) Clostridium perfringens ATCC 13124 4201163 YP_696617.1 CDS relA NC_008261.1 2433099 2435279 R identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(2433099..2435279) Clostridium perfringens ATCC 13124 4202739 YP_696618.1 CDS apt NC_008261.1 2435431 2435949 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2435431..2435949) Clostridium perfringens ATCC 13124 4203608 YP_696619.1 CDS CPF_2195 NC_008261.1 2435993 2436847 R identified by match to protein family HMM PF01368; DHH domain-containing protein complement(2435993..2436847) Clostridium perfringens ATCC 13124 4201990 YP_696620.1 CDS secF NC_008261.1 2437047 2437916 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2437047..2437916) Clostridium perfringens ATCC 13124 4201221 YP_696621.1 CDS secD NC_008261.1 2437909 2439168 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2437909..2439168) Clostridium perfringens ATCC 13124 4202501 YP_696622.1 CDS CPF_2198 NC_008261.1 2439266 2440639 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2439266..2440639) Clostridium perfringens ATCC 13124 4202442 YP_696623.1 CDS CPF_2199 NC_008261.1 2440709 2440849 R hypothetical protein complement(2440709..2440849) Clostridium perfringens ATCC 13124 4201847 YP_696624.1 CDS yajC NC_008261.1 2441045 2441314 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2441045..2441314) Clostridium perfringens ATCC 13124 4202855 YP_696625.1 CDS tgt NC_008261.1 2441353 2442495 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2441353..2442495) Clostridium perfringens ATCC 13124 4202383 YP_696626.1 CDS queA NC_008261.1 2442519 2443544 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2442519..2443544) Clostridium perfringens ATCC 13124 4203527 YP_696627.1 CDS ruvB NC_008261.1 2443566 2444606 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2443566..2444606) Clostridium perfringens ATCC 13124 4201457 YP_696628.1 CDS ruvA NC_008261.1 2444620 2445225 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2444620..2445225) Clostridium perfringens ATCC 13124 4203360 YP_696629.1 CDS CPF_2205 NC_008261.1 2445454 2446047 R identified by similarity to PIR:T44357; hypothetical protein complement(2445454..2446047) Clostridium perfringens ATCC 13124 4202304 YP_696630.1 CDS CPF_2206 NC_008261.1 2446345 2449890 R in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein complement(2446345..2449890) Clostridium perfringens ATCC 13124 4203148 YP_696631.1 CDS CPF_2207 NC_008261.1 2450140 2453787 R in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein complement(2450140..2453787) Clostridium perfringens ATCC 13124 4201898 YP_696632.1 CDS CPF_2208 NC_008261.1 2454036 2455034 R identified by similarity to GB:AAP10275.1; hypothetical protein complement(2454036..2455034) Clostridium perfringens ATCC 13124 4202408 YP_696633.1 CDS vhb NC_008261.1 2455509 2455943 R identified by similarity to SP:P04252; match to protein family HMM PF00042; hemoglobin complement(2455509..2455943) Clostridium perfringens ATCC 13124 4203523 YP_696634.1 CDS CPF_2210 NC_008261.1 2456370 2457107 R identified by similarity to SP:Q9ZNK0; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(2456370..2457107) Clostridium perfringens ATCC 13124 4201100 YP_696635.1 CDS CPF_2211 NC_008261.1 2457233 2457886 R identified by similarity to GB:AAO36701.1; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(2457233..2457886) Clostridium perfringens ATCC 13124 4203279 YP_696636.1 CDS CPF_2212 NC_008261.1 2457892 2459298 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2457892..2459298) Clostridium perfringens ATCC 13124 4202735 YP_696637.1 CDS CPF_2213 NC_008261.1 2459313 2460215 R identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(2459313..2460215) Clostridium perfringens ATCC 13124 4203753 YP_696638.1 CDS CPF_2214 NC_008261.1 2460257 2460730 R hypothetical protein complement(2460257..2460730) Clostridium perfringens ATCC 13124 4202927 YP_696639.1 CDS CPF_2215 NC_008261.1 2460862 2462655 R identified by match to protein family HMM PF01926; GTP binding protein complement(2460862..2462655) Clostridium perfringens ATCC 13124 4203873 YP_696640.1 CDS hpt NC_008261.1 2462762 2463286 D identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 2462762..2463286 Clostridium perfringens ATCC 13124 4202462 YP_696641.1 CDS yunB NC_008261.1 2463320 2464009 R identified by similarity to PIR:T44346; match to protein family HMM TIGR02832; sporulation protein YunB complement(2463320..2464009) Clostridium perfringens ATCC 13124 4203465 YP_696642.1 CDS CPF_2218 NC_008261.1 2464146 2466638 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 2464146..2466638 Clostridium perfringens ATCC 13124 4203594 YP_696643.1 CDS CPF_2219 NC_008261.1 2466932 2468332 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 2466932..2468332 Clostridium perfringens ATCC 13124 4203618 YP_696644.1 CDS CPF_2220 NC_008261.1 2468369 2468761 R hypothetical protein complement(2468369..2468761) Clostridium perfringens ATCC 13124 4202536 YP_696645.1 CDS CPF_2221 NC_008261.1 2468809 2469774 R identified by match to protein family HMM PF00583; acetyltransferase complement(2468809..2469774) Clostridium perfringens ATCC 13124 4201135 YP_696646.1 CDS CPF_2222 NC_008261.1 2470211 2470750 D identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 2470211..2470750 Clostridium perfringens ATCC 13124 4203293 YP_696647.1 CDS potA NC_008261.1 2470782 2471831 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding protein 2470782..2471831 Clostridium perfringens ATCC 13124 4202578 YP_696648.1 CDS potB NC_008261.1 2471834 2472679 D identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 2471834..2472679 Clostridium perfringens ATCC 13124 4201714 YP_696649.1 CDS potC NC_008261.1 2472673 2473473 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC 2472673..2473473 Clostridium perfringens ATCC 13124 4203794 YP_696650.1 CDS potD NC_008261.1 2473475 2474557 D identified by similarity to SP:P23861; match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 2473475..2474557 Clostridium perfringens ATCC 13124 4201049 YP_696651.1 CDS CPF_2227 NC_008261.1 2474812 2475243 R identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase complement(2474812..2475243) Clostridium perfringens ATCC 13124 4203247 YP_696652.1 CDS CPF_2228 NC_008261.1 2475428 2475697 D identified by similarity to SP:O35031; match to protein family HMM PF00708; acylphosphatase 2475428..2475697 Clostridium perfringens ATCC 13124 4202524 YP_696653.1 CDS CPF_2229 NC_008261.1 2475837 2475992 R hypothetical protein complement(2475837..2475992) Clostridium perfringens ATCC 13124 4202316 YP_696654.1 CDS CPF_2230 NC_008261.1 2476160 2476726 R hypothetical protein complement(2476160..2476726) Clostridium perfringens ATCC 13124 4202708 YP_696655.1 CDS CPF_2231 NC_008261.1 2476905 2478176 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2476905..2478176 Clostridium perfringens ATCC 13124 4202850 YP_696656.1 CDS CPF_2232 NC_008261.1 2478231 2478875 R hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX complement(2478231..2478875) Clostridium perfringens ATCC 13124 4203389 YP_696657.1 CDS asnA NC_008261.1 2479465 2480475 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 2479465..2480475 Clostridium perfringens ATCC 13124 4202640 YP_696658.1 CDS CPF_2234 NC_008261.1 2480601 2481419 D identified by match to protein family HMM PF00515; hypothetical protein 2480601..2481419 Clostridium perfringens ATCC 13124 4203807 YP_696659.1 CDS CPF_2235 NC_008261.1 2481531 2481908 D identified by match to protein family HMM PF03788; LrgA family protein 2481531..2481908 Clostridium perfringens ATCC 13124 4201407 YP_696660.1 CDS CPF_2236 NC_008261.1 2481901 2482611 D identified by match to protein family HMM PF04172; lrgB-like family protein 2481901..2482611 Clostridium perfringens ATCC 13124 4202381 YP_696661.1 CDS CPF_2237 NC_008261.1 2482709 2483164 D hypothetical protein 2482709..2483164 Clostridium perfringens ATCC 13124 4202129 YP_696662.1 CDS CPF_2238 NC_008261.1 2483377 2485539 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase complement(2483377..2485539) Clostridium perfringens ATCC 13124 4203879 YP_696663.1 CDS CPF_2239 NC_008261.1 2485767 2486924 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase complement(2485767..2486924) Clostridium perfringens ATCC 13124 4202973 YP_696664.1 CDS CPF_2240 NC_008261.1 2487087 2487584 R identified by similarity to GB:AAF24291.1; match to protein family HMM PF03073; TspO/MBR family protein complement(2487087..2487584) Clostridium perfringens ATCC 13124 4202476 YP_696665.1 CDS CPF_2241 NC_008261.1 2487630 2489666 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2487630..2489666) Clostridium perfringens ATCC 13124 4201688 YP_696666.1 CDS CPF_2242 NC_008261.1 2489656 2491518 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2489656..2491518) Clostridium perfringens ATCC 13124 4202642 YP_696667.1 CDS CPF_2243 NC_008261.1 2491663 2492598 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(2491663..2492598) Clostridium perfringens ATCC 13124 4201899 YP_696668.1 CDS CPF_2244 NC_008261.1 2492719 2493639 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(2492719..2493639) Clostridium perfringens ATCC 13124 4202886 YP_696669.1 CDS CPF_2245 NC_008261.1 2493762 2494358 R identified by similarity to PIR:H97195; hypothetical protein complement(2493762..2494358) Clostridium perfringens ATCC 13124 4201730 YP_696670.1 CDS CPF_2247 NC_008261.1 2494644 2495759 R identified by match to protein family HMM PF01270; glycosyl hydrolase complement(2494644..2495759) Clostridium perfringens ATCC 13124 4201691 YP_696671.1 CDS CPF_2248 NC_008261.1 2495811 2496356 R identified by match to protein family HMM PF01464; Slt family transglycosylase complement(2495811..2496356) Clostridium perfringens ATCC 13124 4203598 YP_696672.1 CDS coaE NC_008261.1 2496366 2496965 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(2496366..2496965) Clostridium perfringens ATCC 13124 4203466 YP_696673.1 CDS polA NC_008261.1 2496982 2499582 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(2496982..2499582) Clostridium perfringens ATCC 13124 4202541 YP_696674.1 CDS CPF_2251 NC_008261.1 2499939 2500856 R catalyzes the formation of glutamate from glutamine; glutaminase complement(2499939..2500856) Clostridium perfringens ATCC 13124 4201858 YP_696675.1 CDS CPF_2252 NC_008261.1 2501095 2501610 D hypothetical protein 2501095..2501610 Clostridium perfringens ATCC 13124 4201735 YP_696676.1 CDS CPF_2253 NC_008261.1 2501693 2502928 D identified by similarity to SP:P24828; match to protein family HMM PF02073; aminopeptidase 2501693..2502928 Clostridium perfringens ATCC 13124 4203656 YP_696677.1 CDS CPF_2254 NC_008261.1 2503141 2504190 R identified by similarity to GB:AAO35390.1; hypothetical protein complement(2503141..2504190) Clostridium perfringens ATCC 13124 4201050 YP_696678.1 CDS CPF_2255 NC_008261.1 2504207 2505217 R identified by similarity to GB:AAO35389.1; hypothetical protein complement(2504207..2505217) Clostridium perfringens ATCC 13124 4202718 YP_696679.1 CDS CPF_2256 NC_008261.1 2505426 2505539 R hypothetical protein complement(2505426..2505539) Clostridium perfringens ATCC 13124 4201997 YP_696680.1 CDS CPF_2257 NC_008261.1 2506128 2506385 R hypothetical protein complement(2506128..2506385) Clostridium perfringens ATCC 13124 4202543 YP_696681.1 CDS CPF_2258 NC_008261.1 2506548 2507237 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2506548..2507237) Clostridium perfringens ATCC 13124 4202212 YP_696682.1 CDS CPF_2259 NC_008261.1 2507255 2507812 R hypothetical protein complement(2507255..2507812) Clostridium perfringens ATCC 13124 4203276 YP_696683.1 CDS CPF_2260 NC_008261.1 2507831 2508811 R identified by similarity to SP:P33022; match to protein family HMM PF01156; IUNH family nucleoside hydrolase complement(2507831..2508811) Clostridium perfringens ATCC 13124 4201625 YP_696684.1 CDS CPF_2261 NC_008261.1 2509325 2510113 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; NIF3 family protein complement(2509325..2510113) Clostridium perfringens ATCC 13124 4203495 YP_696685.1 CDS CPF_2262 NC_008261.1 2510113 2510802 R identified by similarity to PIR:F97060; match to protein family HMM PF04816; hypothetical protein complement(2510113..2510802) Clostridium perfringens ATCC 13124 4202944 YP_696686.1 CDS CPF_2263 NC_008261.1 2510816 2511703 R hypothetical protein complement(2510816..2511703) Clostridium perfringens ATCC 13124 4203928 YP_696687.1 CDS rpoD NC_008261.1 2511938 2513038 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(2511938..2513038) Clostridium perfringens ATCC 13124 4202727 YP_696688.1 CDS dnaG NC_008261.1 2513065 2514852 R synthesizes RNA primers at the replication forks; DNA primase complement(2513065..2514852) Clostridium perfringens ATCC 13124 4203208 YP_696689.1 CDS CPF_2266 NC_008261.1 2515021 2516049 R dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2515021..2516049) Clostridium perfringens ATCC 13124 4201261 YP_696690.1 CDS CPF_2267 NC_008261.1 2516254 2517333 D identified by similarity to SP:P46914; match to protein family HMM TIGR02906; spore coat protein 2516254..2517333 Clostridium perfringens ATCC 13124 4201958 YP_696691.1 CDS ppdK NC_008261.1 2517385 2520015 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2517385..2520015) Clostridium perfringens ATCC 13124 4202425 YP_696692.1 CDS CPF_2269 NC_008261.1 2520116 2520748 R identified by match to protein family HMM PF00571; hypothetical protein complement(2520116..2520748) Clostridium perfringens ATCC 13124 4202822 YP_696693.1 CDS CPF_2270 NC_008261.1 2520953 2521579 R identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein complement(2520953..2521579) Clostridium perfringens ATCC 13124 4201583 YP_696694.1 CDS recO NC_008261.1 2521585 2522262 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2521585..2522262) Clostridium perfringens ATCC 13124 4202376 YP_696695.1 CDS era NC_008261.1 2522338 2523228 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2522338..2523228) Clostridium perfringens ATCC 13124 4201145 YP_696696.1 CDS cdd NC_008261.1 2523237 2523635 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(2523237..2523635) Clostridium perfringens ATCC 13124 4203602 YP_696697.1 CDS CPF_2274 NC_008261.1 2523679 2524377 R identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase/PAP2 family protein complement(2523679..2524377) Clostridium perfringens ATCC 13124 4203436 YP_696698.1 CDS CPF_2275 NC_008261.1 2524405 2524911 R identified by similarity to SP:Q8RB52; match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(2524405..2524911) Clostridium perfringens ATCC 13124 4203895 YP_696699.1 CDS CPF_2276 NC_008261.1 2524913 2526967 R identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; hydrolase complement(2524913..2526967) Clostridium perfringens ATCC 13124 4202339 YP_696700.1 CDS CPF_2277 NC_008261.1 2527004 2528140 R identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876; stage IV sporulation protein complement(2527004..2528140) Clostridium perfringens ATCC 13124 4201466 YP_696701.1 CDS yqfC NC_008261.1 2528142 2528438 R identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856; sporulation protein YqfC complement(2528142..2528438) Clostridium perfringens ATCC 13124 4203090 YP_696702.1 CDS CPF_2279 NC_008261.1 2528659 2529108 R identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein complement(2528659..2529108) Clostridium perfringens ATCC 13124 4202105 YP_696703.1 CDS rpsU NC_008261.1 2529158 2529334 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2529158..2529334) Clostridium perfringens ATCC 13124 4203347 YP_696704.1 CDS CPF_2281 NC_008261.1 2529454 2529798 R identified by match to protein family HMM PF01230; HIT family protein complement(2529454..2529798) Clostridium perfringens ATCC 13124 4201715 YP_696705.1 CDS CPF_2282 NC_008261.1 2529867 2531171 R identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme complement(2529867..2531171) Clostridium perfringens ATCC 13124 4201914 YP_696706.1 CDS CPF_2283 NC_008261.1 2531171 2531923 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2531171..2531923) Clostridium perfringens ATCC 13124 4202222 YP_696707.1 CDS prmA NC_008261.1 2531946 2532887 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(2531946..2532887) Clostridium perfringens ATCC 13124 4203626 YP_696708.1 CDS CPF_2285 NC_008261.1 2533113 2533469 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2533113..2533469) Clostridium perfringens ATCC 13124 4203681 YP_696709.1 CDS CPF_2286 NC_008261.1 2533471 2534649 R hypothetical protein complement(2533471..2534649) Clostridium perfringens ATCC 13124 4201301 YP_696710.1 CDS CPF_2287 NC_008261.1 2534665 2535492 R hypothetical protein complement(2534665..2535492) Clostridium perfringens ATCC 13124 4201862 YP_696711.1 CDS CPF_2288 NC_008261.1 2535479 2536171 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2535479..2536171) Clostridium perfringens ATCC 13124 4202157 YP_696712.1 CDS dnaJ NC_008261.1 2536347 2537510 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(2536347..2537510) Clostridium perfringens ATCC 13124 4201485 YP_696713.1 CDS dnaK NC_008261.1 2537624 2539483 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2537624..2539483) Clostridium perfringens ATCC 13124 4203457 YP_696714.1 CDS grpE NC_008261.1 2539540 2540166 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2539540..2540166) Clostridium perfringens ATCC 13124 4202666 YP_696715.1 CDS hrcA NC_008261.1 2540197 2541216 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(2540197..2541216) Clostridium perfringens ATCC 13124 4201108 YP_696716.1 CDS CPF_2293 NC_008261.1 2541413 2542546 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2541413..2542546) Clostridium perfringens ATCC 13124 4201936 YP_696717.1 CDS CPF_2294 NC_008261.1 2542816 2543085 R hypothetical protein complement(2542816..2543085) Clostridium perfringens ATCC 13124 4203939 YP_696718.1 CDS lepA NC_008261.1 2543342 2545144 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2543342..2545144) Clostridium perfringens ATCC 13124 4201955 YP_696719.1 CDS CPF_2296 NC_008261.1 2545265 2545627 R hypothetical protein complement(2545265..2545627) Clostridium perfringens ATCC 13124 4201572 YP_696720.1 CDS CPF_2297 NC_008261.1 2545682 2546767 R identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867; stage II sporulation protein P complement(2545682..2546767) Clostridium perfringens ATCC 13124 4202218 YP_696721.1 CDS gpr NC_008261.1 2546916 2547893 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(2546916..2547893) Clostridium perfringens ATCC 13124 4201287 YP_696722.1 CDS rpsT NC_008261.1 2548089 2548352 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2548089..2548352 Clostridium perfringens ATCC 13124 4202171 YP_696723.1 CDS holA NC_008261.1 2548448 2549494 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(2548448..2549494) Clostridium perfringens ATCC 13124 4201210 YP_696724.1 CDS CPF_2301 NC_008261.1 2549538 2551193 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence family protein complement(2549538..2551193) Clostridium perfringens ATCC 13124 4201719 YP_696725.1 CDS spoVAE NC_008261.1 2551245 2551610 R identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839; stage V sporulation protein AE complement(2551245..2551610) Clostridium perfringens ATCC 13124 4202005 YP_696726.1 CDS spoVAD NC_008261.1 2551666 2552685 R identified by similarity to SP:P40869; match to protein family HMM PF07451; match to protein family HMM TIGR02845; stage V sporulation protein AD complement(2551666..2552685) Clostridium perfringens ATCC 13124 4201597 YP_696727.1 CDS spoVAC NC_008261.1 2552691 2553158 R identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838; stage V sporulation protein AC complement(2552691..2553158) Clostridium perfringens ATCC 13124 4203771 YP_696728.1 CDS sigF NC_008261.1 2553296 2554051 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF complement(2553296..2554051) Clostridium perfringens ATCC 13124 4201171 YP_696729.1 CDS spoIIAB NC_008261.1 2554069 2554491 R binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor complement(2554069..2554491) Clostridium perfringens ATCC 13124 4203005 YP_696730.1 CDS spoIIAA NC_008261.1 2554505 2554840 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886; anti-sigma F factor antagonist complement(2554505..2554840) Clostridium perfringens ATCC 13124 4203474 YP_696731.1 CDS CPF_2308 NC_008261.1 2554974 2557259 R identified by match to protein family HMM PF05362; ATP-dependent protease complement(2554974..2557259) Clostridium perfringens ATCC 13124 4202347 YP_696732.1 CDS deoC NC_008261.1 2557460 2558134 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(2557460..2558134) Clostridium perfringens ATCC 13124 4203643 YP_696733.1 CDS CPF_2310 NC_008261.1 2558391 2558798 D identified by similarity to GB:AAO36186.1; hypothetical protein 2558391..2558798 Clostridium perfringens ATCC 13124 4202748 YP_696734.1 CDS CPF_2311 NC_008261.1 2559002 2561551 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P complement(2559002..2561551) Clostridium perfringens ATCC 13124 4201028 YP_696735.1 CDS CPF_2312 NC_008261.1 2561796 2563445 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2561796..2563445 Clostridium perfringens ATCC 13124 4203824 YP_696736.1 CDS CPF_2313 NC_008261.1 2563488 2564129 R identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase complement(2563488..2564129) Clostridium perfringens ATCC 13124 4203266 YP_696737.1 CDS CPF_2314 NC_008261.1 2564213 2564587 R identified by similarity to PIR:F97174; hypothetical protein complement(2564213..2564587) Clostridium perfringens ATCC 13124 4203531 YP_696738.1 CDS CPF_2315 NC_008261.1 2564797 2566191 R identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; glutamate decarboxylase complement(2564797..2566191) Clostridium perfringens ATCC 13124 4202384 YP_696739.1 CDS CPF_2316 NC_008261.1 2566777 2567832 R hypothetical protein complement(2566777..2567832) Clostridium perfringens ATCC 13124 4203433 YP_696740.1 CDS CPF_2317 NC_008261.1 2567952 2569370 R identified by match to protein family HMM PF00324; glutamate:gamma aminobutyrate antiporter family protein complement(2567952..2569370) Clostridium perfringens ATCC 13124 4201105 YP_696741.1 CDS nifJ NC_008261.1 2570072 2573587 R identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780; match to protein family HMM TIGR02176; pyruvate-flavodoxin oxidoreductase complement(2570072..2573587) Clostridium perfringens ATCC 13124 4203301 YP_696742.1 CDS CPF_2319 NC_008261.1 2573692 2574117 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(2573692..2574117) Clostridium perfringens ATCC 13124 4202364 YP_696743.2 CDS murG NC_008261.1 2574324 2575397 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(2574324..2575397) Clostridium perfringens ATCC 13124 4203621 YP_696744.1 CDS sspC1 NC_008261.1 2575582 2575761 D identified by similarity to PIR:JN0082; match to protein family HMM PF00269; small, acid-soluble spore protein 2575582..2575761 Clostridium perfringens ATCC 13124 4201333 YP_696745.1 CDS recJ NC_008261.1 2575882 2577660 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(2575882..2577660) Clostridium perfringens ATCC 13124 4202919 YP_696746.1 CDS CPF_2323 NC_008261.1 2577672 2578883 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(2577672..2578883) Clostridium perfringens ATCC 13124 4202090 YP_696747.1 CDS CPF_2324 NC_008261.1 2579096 2579671 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein complement(2579096..2579671) Clostridium perfringens ATCC 13124 4203067 YP_696748.1 CDS gyrA NC_008261.1 2579683 2582622 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2579683..2582622) Clostridium perfringens ATCC 13124 4202991 YP_696749.1 CDS CPF_2326 NC_008261.1 2582636 2584582 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2582636..2584582) Clostridium perfringens ATCC 13124 4202466 YP_696750.1 CDS CPF_2327 NC_008261.1 2584572 2585642 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(2584572..2585642) Clostridium perfringens ATCC 13124 4203734 YP_696751.1 CDS CPF_2328 NC_008261.1 2585888 2587288 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2585888..2587288) Clostridium perfringens ATCC 13124 4203878 YP_696752.1 CDS uvsE NC_008261.1 2588139 2589377 D identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629; UV damage endonuclease 2588139..2589377 Clostridium perfringens ATCC 13124 4202450 YP_696753.1 CDS ytaF NC_008261.1 2589462 2590070 D identified by match to protein family HMM TIGR02840; sporulation protein YtaF 2589462..2590070 Clostridium perfringens ATCC 13124 4202147 YP_696754.1 CDS CPF_2331 NC_008261.1 2590240 2591409 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(2590240..2591409) Clostridium perfringens ATCC 13124 4201530 YP_696755.1 CDS CPF_2332 NC_008261.1 2591647 2593137 R identified by match to protein family HMM PF00324; amino acid permease complement(2591647..2593137) Clostridium perfringens ATCC 13124 4203855 YP_696756.1 CDS CPF_2333 NC_008261.1 2593484 2595724 R identified by similarity to SP:Q9F234; match to protein family HMM PF01055; alpha-glucosidase complement(2593484..2595724) Clostridium perfringens ATCC 13124 4203265 YP_696757.1 CDS CPF_2334 NC_008261.1 2595773 2596666 R identified by match to protein family HMM PF00480; ROK family protein complement(2595773..2596666) Clostridium perfringens ATCC 13124 4202738 YP_696758.1 CDS CPF_2335 NC_008261.1 2596807 2598255 R identified by similarity to SP:P37966; match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(2596807..2598255) Clostridium perfringens ATCC 13124 4202670 YP_696759.1 CDS CPF_2336 NC_008261.1 2598640 2599134 D hypothetical protein 2598640..2599134 Clostridium perfringens ATCC 13124 4202856 YP_696760.1 CDS CPF_2337 NC_008261.1 2599202 2602336 R identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748; alpha-mannosidase complement(2599202..2602336) Clostridium perfringens ATCC 13124 4201561 YP_696761.1 CDS CPF_2338 NC_008261.1 2602643 2603599 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2602643..2603599) Clostridium perfringens ATCC 13124 4203229 YP_696762.1 CDS CPF_2339 NC_008261.1 2603617 2604585 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2603617..2604585) Clostridium perfringens ATCC 13124 4201045 YP_696763.1 CDS moaC NC_008261.1 2604813 2605289 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(2604813..2605289) Clostridium perfringens ATCC 13124 4202445 YP_696764.1 CDS modB NC_008261.1 2605328 2605984 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease complement(2605328..2605984) Clostridium perfringens ATCC 13124 4202460 YP_696765.1 CDS modA NC_008261.1 2605988 2606758 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter molybdate-binding protein complement(2605988..2606758) Clostridium perfringens ATCC 13124 4201123 YP_696766.1 CDS CPF_2343 NC_008261.1 2606743 2607234 R identified by similarity to PDB:1O8N_A; match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor synthesis protein complement(2606743..2607234) Clostridium perfringens ATCC 13124 4201154 YP_696767.1 CDS CPF_2344 NC_008261.1 2607576 2609099 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator complement(2607576..2609099) Clostridium perfringens ATCC 13124 4201956 YP_696768.1 CDS CPF_2345 NC_008261.1 2609104 2610840 R identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase complement(2609104..2610840) Clostridium perfringens ATCC 13124 4201025 YP_696769.1 CDS CPF_2346 NC_008261.1 2611062 2611739 D hypothetical protein 2611062..2611739 Clostridium perfringens ATCC 13124 4202392 YP_696770.1 CDS CPF_2347 NC_008261.1 2612006 2613343 D identified by match to protein family HMM PF02388; FemAB family protein 2612006..2613343 Clostridium perfringens ATCC 13124 4203694 YP_696771.1 CDS CPF_2348 NC_008261.1 2613709 2614014 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2613709..2614014 Clostridium perfringens ATCC 13124 4202274 YP_696772.1 CDS CPF_2349 NC_008261.1 2614061 2614798 R identified by similarity to SP:P54954; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(2614061..2614798) Clostridium perfringens ATCC 13124 4202511 YP_696773.1 CDS CPF_2350 NC_008261.1 2614817 2616325 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter amino acid-binding protein/permease complement(2614817..2616325) Clostridium perfringens ATCC 13124 4201129 YP_696774.1 CDS CPF_2351 NC_008261.1 2616498 2617277 D identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2616498..2617277 Clostridium perfringens ATCC 13124 4203150 YP_696775.1 CDS CPF_2352 NC_008261.1 2617410 2617826 R identified by similarity to PIR:A75034; match to protein family HMM PF01934; hypothetical protein complement(2617410..2617826) Clostridium perfringens ATCC 13124 4202474 YP_696776.1 CDS CPF_2353 NC_008261.1 2618333 2619154 R hypothetical protein complement(2618333..2619154) Clostridium perfringens ATCC 13124 4203252 YP_696777.1 CDS CPF_2354 NC_008261.1 2619173 2620429 R hypothetical protein complement(2619173..2620429) Clostridium perfringens ATCC 13124 4202990 YP_696778.1 CDS virJ NC_008261.1 2620546 2621994 R identified by similarity to GB:BAA78774.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2620546..2621994) Clostridium perfringens ATCC 13124 4203361 YP_696779.1 CDS virI NC_008261.1 2621984 2622682 R identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2621984..2622682) Clostridium perfringens ATCC 13124 4202884 YP_696780.1 CDS CPF_2357 NC_008261.1 2622885 2623280 R hypothetical protein complement(2622885..2623280) Clostridium perfringens ATCC 13124 4202113 YP_696781.1 CDS CPF_2358 NC_008261.1 2623413 2623703 R identified by similarity to PIR:A96991; match to protein family HMM PF04456; hypothetical protein complement(2623413..2623703) Clostridium perfringens ATCC 13124 4201791 YP_696782.1 CDS CPF_2359 NC_008261.1 2623715 2625472 R identified by match to protein family HMM PF00271; helicase complement(2623715..2625472) Clostridium perfringens ATCC 13124 4203788 YP_696783.1 CDS CPF_2360 NC_008261.1 2625734 2626594 D identified by match to protein family HMM PF05175; match to protein family HMM PF06325; 50S ribosomal protein L11 methyltransferase 2625734..2626594 Clostridium perfringens ATCC 13124 4203055 YP_696784.1 CDS CPF_2361 NC_008261.1 2627002 2627517 R identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456; hypothetical protein complement(2627002..2627517) Clostridium perfringens ATCC 13124 4203536 YP_696785.1 CDS CPF_2362 NC_008261.1 2627535 2627909 R identified by similarity to GB:AAM25615.1; match to protein family HMM PF07009; hypothetical protein complement(2627535..2627909) Clostridium perfringens ATCC 13124 4203145 YP_696786.1 CDS CPF_2363 NC_008261.1 2627910 2628941 R identified by similarity to SP:P41780; match to protein family HMM PF02424; thiamin biosynthesis lipoprotein ApbE complement(2627910..2628941) Clostridium perfringens ATCC 13124 4202567 YP_696787.1 CDS CPF_2364 NC_008261.1 2629113 2632358 R identified by similarity to GB:AAO36386.1; match to protein family HMM PF07550; hypothetical protein complement(2629113..2632358) Clostridium perfringens ATCC 13124 4203382 YP_696788.1 CDS CPF_2365 NC_008261.1 2632371 2633417 R hypothetical protein complement(2632371..2633417) Clostridium perfringens ATCC 13124 4202011 YP_696789.1 CDS CPF_2366 NC_008261.1 2633617 2634066 R identified by similarity to GB:AAO81374.1; hypothetical protein complement(2633617..2634066) Clostridium perfringens ATCC 13124 4202300 YP_696790.1 CDS CPF_2367 NC_008261.1 2634354 2635775 D identified by match to protein family HMM PF07690; major facilitator family transporter 2634354..2635775 Clostridium perfringens ATCC 13124 4203209 YP_696791.1 CDS CPF_2368 NC_008261.1 2635900 2637654 R identified by match to protein family HMM PF00082; subtilase complement(2635900..2637654) Clostridium perfringens ATCC 13124 4202078 YP_696792.2 CDS CPF_2369 NC_008261.1 2637656 2639266 R identified by match to protein family HMM PF00082; subtilase complement(2637656..2639266) Clostridium perfringens ATCC 13124 4201054 YP_696793.1 CDS rumA NC_008261.1 2639725 2641080 R identified by match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(2639725..2641080) Clostridium perfringens ATCC 13124 4203218 YP_696794.1 CDS CPF_2371 NC_008261.1 2641108 2641557 R hypothetical protein complement(2641108..2641557) Clostridium perfringens ATCC 13124 4202929 YP_696795.1 CDS selB NC_008261.1 2641744 2643651 R identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor complement(2641744..2643651) Clostridium perfringens ATCC 13124 4203391 YP_696796.1 CDS selA NC_008261.1 2643652 2645040 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(2643652..2645040) Clostridium perfringens ATCC 13124 4201265 YP_696797.1 CDS selD NC_008261.1 2645057 2646088 R Selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase complement(2645057..2646088) Clostridium perfringens ATCC 13124 4203499 YP_696798.1 CDS CPF_2375 NC_008261.1 2646133 2646897 R identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426; comE operon protein 1 complement(2646133..2646897) Clostridium perfringens ATCC 13124 4203074 YP_696799.1 CDS dacF NC_008261.1 2647093 2648427 D identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 2647093..2648427 Clostridium perfringens ATCC 13124 4203925 YP_696800.1 CDS CPF_2377 NC_008261.1 2648459 2649355 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(2648459..2649355) Clostridium perfringens ATCC 13124 4202892 YP_696801.1 CDS CPF_2378 NC_008261.1 2649352 2650665 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator complement(2649352..2650665) Clostridium perfringens ATCC 13124 4203032 YP_696802.1 CDS CPF_2379 NC_008261.1 2650688 2651257 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; HD domain-containing protein complement(2650688..2651257) Clostridium perfringens ATCC 13124 4203549 YP_696803.1 CDS nadD NC_008261.1 2651260 2651868 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(2651260..2651868) Clostridium perfringens ATCC 13124 4201618 YP_696804.1 CDS CPF_2381 NC_008261.1 2651870 2652172 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; RNA-binding protein complement(2651870..2652172) Clostridium perfringens ATCC 13124 4201151 YP_696805.1 CDS obgE NC_008261.1 2652190 2653476 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2652190..2653476) Clostridium perfringens ATCC 13124 4201168 YP_696806.1 CDS rpmA NC_008261.1 2653643 2653945 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2653643..2653945) Clostridium perfringens ATCC 13124 4202261 YP_696807.1 CDS CPF_2384 NC_008261.1 2653949 2654320 R identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327; hypothetical protein complement(2653949..2654320) Clostridium perfringens ATCC 13124 4203275 YP_696808.1 CDS rplU NC_008261.1 2654330 2654641 R identified by similarity to SP:P26908; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(2654330..2654641) Clostridium perfringens ATCC 13124 4201803 YP_696809.1 CDS CPF_2386 NC_008261.1 2654767 2656209 R identified by similarity to SP:P25537; match to protein family HMM TIGR00757; ribonuclease complement(2654767..2656209) Clostridium perfringens ATCC 13124 4201684 YP_696810.1 CDS CPF_2387 NC_008261.1 2656226 2656933 R identified by similarity to GB:AAO36563.1; hypothetical protein complement(2656226..2656933) Clostridium perfringens ATCC 13124 4201346 YP_696811.1 CDS CPF_2388 NC_008261.1 2656911 2658764 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2656911..2658764) Clostridium perfringens ATCC 13124 4202490 YP_696812.1 CDS CPF_2389 NC_008261.1 2658896 2659750 R identified by match to protein family HMM PF02163; M50 family peptidase complement(2658896..2659750) Clostridium perfringens ATCC 13124 4201494 YP_696813.1 CDS CPF_2390 NC_008261.1 2659747 2660589 R M23 peptidase domain-containing protein complement(2659747..2660589) Clostridium perfringens ATCC 13124 4201189 YP_696814.1 CDS CPF_2391 NC_008261.1 2660742 2661866 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell cycle protein FtsW complement(2660742..2661866) Clostridium perfringens ATCC 13124 4203126 YP_696815.1 CDS minE NC_008261.1 2662014 2662286 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2662014..2662286) Clostridium perfringens ATCC 13124 4202825 YP_696816.1 CDS minD NC_008261.1 2662297 2663094 R identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD complement(2662297..2663094) Clostridium perfringens ATCC 13124 4201681 YP_696817.1 CDS minC NC_008261.1 2663123 2663758 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2663123..2663758) Clostridium perfringens ATCC 13124 4202514 YP_696818.1 CDS CPF_2395 NC_008261.1 2664005 2667076 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(2664005..2667076) Clostridium perfringens ATCC 13124 4202160 YP_696819.1 CDS mreD NC_008261.1 2667085 2667582 R identified by match to protein family HMM PF04093; rod shape-determining protein MreD complement(2667085..2667582) Clostridium perfringens ATCC 13124 4203813 YP_696820.1 CDS mreC NC_008261.1 2667598 2668449 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2667598..2668449) Clostridium perfringens ATCC 13124 4201571 YP_696821.1 CDS mreB NC_008261.1 2668453 2669481 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2668453..2669481) Clostridium perfringens ATCC 13124 4203262 YP_696822.1 CDS radC NC_008261.1 2669501 2670184 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(2669501..2670184) Clostridium perfringens ATCC 13124 4203766 YP_696823.1 CDS maf NC_008261.1 2670231 2670809 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2670231..2670809) Clostridium perfringens ATCC 13124 4203827 YP_696824.1 CDS CPF_2401 NC_008261.1 2671035 2671838 R identified by similarity to GB:AAO36576.1; match to protein family HMM PF05036; hypothetical protein complement(2671035..2671838) Clostridium perfringens ATCC 13124 4202093 YP_696825.1 CDS CPF_2402 NC_008261.1 2672100 2672918 R identified by similarity to GB:AAM71574.1; match to protein family HMM PF02811; hypothetical protein complement(2672100..2672918) Clostridium perfringens ATCC 13124 4203169 YP_696826.1 CDS pepD NC_008261.1 2673232 2674683 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(2673232..2674683) Clostridium perfringens ATCC 13124 4203488 YP_696827.1 CDS pyk NC_008261.1 2674816 2676240 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 2674816..2676240 Clostridium perfringens ATCC 13124 4201759 YP_696828.1 CDS rpsA NC_008261.1 2676482 2677618 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2676482..2677618) Clostridium perfringens ATCC 13124 4203377 YP_696829.1 CDS CPF_2406 NC_008261.1 2677764 2677967 R identified by match to protein family HMM PF00403; heavy metal binding protein complement(2677764..2677967) Clostridium perfringens ATCC 13124 4202503 YP_696830.1 CDS CPF_2407 NC_008261.1 2678072 2678836 R identified by match to protein family HMM PF03883; hypothetical protein complement(2678072..2678836) Clostridium perfringens ATCC 13124 4203484 YP_696831.1 CDS CPF_2408 NC_008261.1 2679002 2679412 R identified by match to protein family HMM PF00571; hypothetical protein complement(2679002..2679412) Clostridium perfringens ATCC 13124 4202355 YP_696832.1 CDS CPF_2409 NC_008261.1 2679498 2680400 R identified by match to protein family HMM PF00929; exonuclease complement(2679498..2680400) Clostridium perfringens ATCC 13124 4203083 YP_696833.1 CDS CPF_2410 NC_008261.1 2680655 2682409 R identified by similarity to GB:BAD77579.1; match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein complement(2680655..2682409) Clostridium perfringens ATCC 13124 4201465 YP_696834.1 CDS CPF_2411 NC_008261.1 2682582 2684369 R identified by match to protein family HMM PF00488; MutS domain-containing protein complement(2682582..2684369) Clostridium perfringens ATCC 13124 4203573 YP_696835.1 CDS ptsG NC_008261.1 2684693 2686222 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002; PTS system, glucose-specific IIBC component complement(2684693..2686222) Clostridium perfringens ATCC 13124 4203550 YP_696836.1 CDS CPF_2413 NC_008261.1 2686393 2687289 R identified by similarity to SP:Q8CWN2; match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(2686393..2687289) Clostridium perfringens ATCC 13124 4203105 YP_696837.1 CDS CPF_2414 NC_008261.1 2687401 2687508 R hypothetical protein complement(2687401..2687508) Clostridium perfringens ATCC 13124 4201181 YP_696838.1 CDS CPF_2415 NC_008261.1 2687515 2690283 R identified by similarity to SP:P62134; hypothetical protein complement(2687515..2690283) Clostridium perfringens ATCC 13124 4201024 YP_696839.1 CDS CPF_2416 NC_008261.1 2690273 2691412 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(2690273..2691412) Clostridium perfringens ATCC 13124 4202894 YP_696840.1 CDS CPF_2417 NC_008261.1 2691692 2691874 R identified by similarity to SP:P41371; match to protein family HMM PF00269; small, acid-soluble spore protein 1 complement(2691692..2691874) Clostridium perfringens ATCC 13124 4202060 YP_696841.1 CDS CPF_2418 NC_008261.1 2692014 2694188 R identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167; Ser/Thr protein phosphatase complement(2692014..2694188) Clostridium perfringens ATCC 13124 4202487 YP_696842.1 CDS CPF_2421 NC_008261.1 2694788 2695408 R identified by match to protein family HMM PF00571; hypothetical protein complement(2694788..2695408) Clostridium perfringens ATCC 13124 4203814 YP_696843.1 CDS CPF_2422 NC_008261.1 2695708 2696172 D identified by similarity to PIR:C97249; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 2695708..2696172 Clostridium perfringens ATCC 13124 4203826 YP_696844.1 CDS CPF_2423 NC_008261.1 2696166 2696870 D identified by match to protein family HMM PF00814; glycoprotease 2696166..2696870 Clostridium perfringens ATCC 13124 4201909 YP_696845.1 CDS rimI NC_008261.1 2696870 2697316 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 2696870..2697316 Clostridium perfringens ATCC 13124 4200948 YP_696846.1 CDS CPF_2425 NC_008261.1 2697410 2698006 R hypothetical protein complement(2697410..2698006) Clostridium perfringens ATCC 13124 4202672 YP_696847.1 CDS CPF_2426 NC_008261.1 2698353 2700515 R identified by match to protein family HMM PF00575; RNA-binding protein complement(2698353..2700515) Clostridium perfringens ATCC 13124 4202441 YP_696848.1 CDS CPF_2427 NC_008261.1 2700627 2701970 D identified by match to protein family HMM PF04389; peptidase 2700627..2701970 Clostridium perfringens ATCC 13124 4202801 YP_696849.1 CDS prfB NC_008261.1 2702218 2703307 R catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 complement(join(2702218..2703234,2703236..2703307)) Clostridium perfringens ATCC 13124 4201900 YP_696850.1 CDS secA NC_008261.1 2703566 2706088 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2703566..2706088) Clostridium perfringens ATCC 13124 4201799 YP_696851.1 CDS raiA NC_008261.1 2706323 2706862 R identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein complement(2706323..2706862) Clostridium perfringens ATCC 13124 4201203 YP_696852.1 CDS CPF_2431 NC_008261.1 2707314 2707973 R competence protein FC complement(2707314..2707973) Clostridium perfringens ATCC 13124 4203680 YP_696853.1 CDS CPF_2432 NC_008261.1 2707949 2708911 R hypothetical protein complement(2707949..2708911) Clostridium perfringens ATCC 13124 4202245 YP_696854.1 CDS CPF_2433 NC_008261.1 2708929 2711163 R identified by match to protein family HMM TIGR01448; recombinase D complement(2708929..2711163) Clostridium perfringens ATCC 13124 4202799 YP_696855.1 CDS nagA NC_008261.1 2711300 2712436 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 2711300..2712436 Clostridium perfringens ATCC 13124 4202492 YP_696856.1 CDS metK NC_008261.1 2712572 2713747 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2712572..2713747) Clostridium perfringens ATCC 13124 4203392 YP_696857.1 CDS CPF_2443 NC_008261.1 2714966 2715610 R hypothetical protein complement(2714966..2715610) Clostridium perfringens ATCC 13124 4201563 YP_696858.1 CDS yyaC NC_008261.1 2715716 2716246 D identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841; sporulation protein YyaC 2715716..2716246 Clostridium perfringens ATCC 13124 4200978 YP_696859.1 CDS mbl NC_008261.1 2716285 2717322 R identified by similarity to SP:P39751; match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl complement(2716285..2717322) Clostridium perfringens ATCC 13124 4201255 YP_696860.1 CDS spoIIID NC_008261.1 2717413 2717664 R identified by similarity to SP:P15281; match to protein family HMM TIGR02844; stage III sporulation protein D complement(2717413..2717664) Clostridium perfringens ATCC 13124 4203767 YP_696861.1 CDS CPF_2447 NC_008261.1 2717741 2718511 R identified by match to protein family HMM PF01551; peptidase complement(2717741..2718511) Clostridium perfringens ATCC 13124 4201284 YP_696862.1 CDS spoIID NC_008261.1 2718621 2719643 R identified by similarity to SP:P07372; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870; stage II sporulation protein D complement(2718621..2719643) Clostridium perfringens ATCC 13124 4201785 YP_696863.1 CDS murA NC_008261.1 2719755 2721020 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2719755..2721020) Clostridium perfringens ATCC 13124 4202068 YP_696864.1 CDS CPF_2450 NC_008261.1 2721043 2721687 R identified by similarity to PIR:C97252; hypothetical protein complement(2721043..2721687) Clostridium perfringens ATCC 13124 4203422 YP_696865.1 CDS atpC NC_008261.1 2721869 2722270 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon complement(2721869..2722270) Clostridium perfringens ATCC 13124 4203551 YP_696866.1 CDS atpD NC_008261.1 2722286 2723683 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(2722286..2723683) Clostridium perfringens ATCC 13124 4201603 YP_696867.1 CDS atpG NC_008261.1 2723697 2724548 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(2723697..2724548) Clostridium perfringens ATCC 13124 4203883 YP_696868.1 CDS atpA NC_008261.1 2724613 2726121 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(2724613..2726121) Clostridium perfringens ATCC 13124 4203916 YP_696869.1 CDS atpH NC_008261.1 2726132 2726671 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(2726132..2726671) Clostridium perfringens ATCC 13124 4203059 YP_696870.1 CDS atpF NC_008261.1 2726674 2727153 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B complement(2726674..2727153) Clostridium perfringens ATCC 13124 4201148 YP_696871.1 CDS atpE NC_008261.1 2727253 2727471 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(2727253..2727471) Clostridium perfringens ATCC 13124 4201186 YP_696872.1 CDS atpB NC_008261.1 2727532 2728206 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(2727532..2728206) Clostridium perfringens ATCC 13124 4201781 YP_696873.1 CDS CPF_2459 NC_008261.1 2728272 2728628 R hypothetical protein complement(2728272..2728628) Clostridium perfringens ATCC 13124 4201413 YP_696874.1 CDS CPF_2460 NC_008261.1 2729310 2730488 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2729310..2730488) Clostridium perfringens ATCC 13124 4201344 YP_696875.1 CDS mnaA NC_008261.1 2730756 2731910 R identified by similarity to SP:P39131; match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase complement(2730756..2731910) Clostridium perfringens ATCC 13124 4201784 YP_696876.1 CDS upp NC_008261.1 2731974 2732603 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2731974..2732603) Clostridium perfringens ATCC 13124 4201005 YP_696877.1 CDS rpiB NC_008261.1 2732648 2733097 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(2732648..2733097) Clostridium perfringens ATCC 13124 4201818 YP_696878.1 CDS CPF_2464 NC_008261.1 2733361 2734413 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(2733361..2734413) Clostridium perfringens ATCC 13124 4203922 YP_696879.1 CDS CPF_2465 NC_008261.1 2734436 2735026 R identified by similarity to PIR:G97254; hypothetical protein complement(2734436..2735026) Clostridium perfringens ATCC 13124 4201267 YP_696880.1 CDS prfA NC_008261.1 2735105 2736187 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2735105..2736187) Clostridium perfringens ATCC 13124 4202688 YP_696881.1 CDS CPF_2467 NC_008261.1 2736244 2738007 R identified by match to protein family HMM PF05175; match to protein family HMM PF07136; match to protein family HMM TIGR00536; HemK family methyltransferase complement(2736244..2738007) Clostridium perfringens ATCC 13124 4201793 YP_696882.1 CDS tdk NC_008261.1 2738033 2738632 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2738033..2738632) Clostridium perfringens ATCC 13124 4203803 YP_696883.1 CDS rpmE NC_008261.1 2738788 2738994 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2738788..2738994 Clostridium perfringens ATCC 13124 4201562 YP_696884.1 CDS CPF_2470 NC_008261.1 2739103 2740227 D identified by match to protein family HMM PF06925; monogalactosyldiacylglycerol synthase 2739103..2740227 Clostridium perfringens ATCC 13124 4202834 YP_696885.2 CDS rho NC_008261.1 2740270 2741739 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2740270..2741739) Clostridium perfringens ATCC 13124 4203781 YP_696886.1 CDS pyrG NC_008261.1 2741994 2743601 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2741994..2743601) Clostridium perfringens ATCC 13124 4203868 YP_696887.1 CDS CPF_2473 NC_008261.1 2743942 2744361 R identified by similarity to GB:AAO34936.1; hypothetical protein complement(2743942..2744361) Clostridium perfringens ATCC 13124 4200972 YP_696888.1 CDS CPF_2474 NC_008261.1 2744384 2745364 R identified by match to protein family HMM PF02568; thiamin biosynthesis protein ThiI complement(2744384..2745364) Clostridium perfringens ATCC 13124 4203085 YP_696889.1 CDS CPF_2475 NC_008261.1 2745410 2746039 R identified by similarity to SP:P39151; match to protein family HMM TIGR02837; stage II sporulation protein R complement(2745410..2746039) Clostridium perfringens ATCC 13124 4202020 YP_696890.1 CDS ipk NC_008261.1 2746109 2746975 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2746109..2746975) Clostridium perfringens ATCC 13124 4203615 YP_696891.1 CDS cphA NC_008261.1 2747111 2749735 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(2747111..2749735) Clostridium perfringens ATCC 13124 4201752 YP_696892.1 CDS cphB NC_008261.1 2749722 2750558 R identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069; cyanophycinase complement(2749722..2750558) Clostridium perfringens ATCC 13124 4201134 YP_696893.1 CDS CPF_2479 NC_008261.1 2750649 2752211 R identified by match to protein family HMM PF01476; lysM domain-containing protein complement(2750649..2752211) Clostridium perfringens ATCC 13124 4203754 YP_696894.1 CDS CPF_2480 NC_008261.1 2752571 2752807 R identified by match to protein family HMM PF06257; hypothetical protein complement(2752571..2752807) Clostridium perfringens ATCC 13124 4202358 YP_696895.1 CDS CPF_2481 NC_008261.1 2752970 2753857 R identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855; peptidase complement(2752970..2753857) Clostridium perfringens ATCC 13124 4203885 YP_696896.1 CDS cotS NC_008261.1 2754056 2755060 R identified by similarity to SP:P46914; match to protein family HMM PF01636; match to protein family HMM TIGR02906; spore coat protein CotS complement(2754056..2755060) Clostridium perfringens ATCC 13124 4201762 YP_696897.1 CDS mtfB NC_008261.1 2755169 2756296 D identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534; mannosyltransferase 2755169..2756296 Clostridium perfringens ATCC 13124 4202186 YP_696898.1 CDS CPF_2484 NC_008261.1 2756479 2757507 R identified by similarity to SP:P46914; match to protein family HMM PF01633; match to protein family HMM TIGR02906; spore coat protein complement(2756479..2757507) Clostridium perfringens ATCC 13124 4203272 YP_696899.1 CDS CPF_2485 NC_008261.1 2757523 2758206 R identified by similarity to GB:AAO34914.1; hypothetical protein complement(2757523..2758206) Clostridium perfringens ATCC 13124 4201916 YP_696900.1 CDS CPF_2486 NC_008261.1 2758214 2759221 R identified by similarity to SP:P46914; match to protein family HMM TIGR02906; spore coat protein complement(2758214..2759221) Clostridium perfringens ATCC 13124 4201110 YP_696901.1 CDS CPF_2487 NC_008261.1 2759350 2760495 D identified by match to protein family HMM PF00534; mannosyltransferase 2759350..2760495 Clostridium perfringens ATCC 13124 4202164 YP_696902.1 CDS CPF_2488 NC_008261.1 2760729 2761259 R identified by similarity to GB:AAO35611.1; match to protein family HMM PF07456; hypothetical protein complement(2760729..2761259) Clostridium perfringens ATCC 13124 4202291 YP_696903.1 CDS CPF_2489 NC_008261.1 2761452 2761823 R identified by similarity to GB:CAC98014.1; match to protein family HMM PF07009; hypothetical protein complement(2761452..2761823) Clostridium perfringens ATCC 13124 4202428 YP_696904.1 CDS CPF_2490 NC_008261.1 2761964 2762407 D identified by similarity to SP:P16055; match to protein family HMM PF04205; lipoprotein 2761964..2762407 Clostridium perfringens ATCC 13124 4202625 YP_696905.1 CDS CPF_2491 NC_008261.1 2762442 2763470 D identified by match to protein family HMM PF02424; ApbE family protein 2762442..2763470 Clostridium perfringens ATCC 13124 4201896 YP_696906.1 CDS CPF_2492 NC_008261.1 2763593 2764717 R identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH complement(2763593..2764717) Clostridium perfringens ATCC 13124 4202485 YP_696907.1 CDS CPF_2493 NC_008261.1 2764880 2765209 R identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB complement(2764880..2765209) Clostridium perfringens ATCC 13124 4201821 YP_696908.1 CDS CPF_2494 NC_008261.1 2765439 2766818 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease complement(2765439..2766818) Clostridium perfringens ATCC 13124 4203306 YP_696909.1 CDS CPF_2495 NC_008261.1 2766935 2767918 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(2766935..2767918) Clostridium perfringens ATCC 13124 4203923 YP_696910.1 CDS gcp NC_008261.1 2767969 2768988 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(2767969..2768988) Clostridium perfringens ATCC 13124 4201125 YP_696911.1 CDS CPF_2497 NC_008261.1 2769130 2769762 D identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 2769130..2769762 Clostridium perfringens ATCC 13124 4203125 YP_696912.1 CDS CPF_2498 NC_008261.1 2769771 2770331 D identified by similarity to SP:P29679; match to protein family HMM PF00657; acyl-CoA thioesterase 2769771..2770331 Clostridium perfringens ATCC 13124 4201111 YP_696913.1 CDS CPF_2499 NC_008261.1 2770468 2771430 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase complement(2770468..2771430) Clostridium perfringens ATCC 13124 4203519 YP_696914.1 CDS CPF_2500 NC_008261.1 2771462 2772034 R identified by similarity to GB:AAM25067.1; match to protein family HMM PF01206; hypothetical protein complement(2771462..2772034) Clostridium perfringens ATCC 13124 4202978 YP_696915.1 CDS CPF_2501 NC_008261.1 2772216 2774105 D identified by match to protein family HMM PF00884; sulfatase 2772216..2774105 Clostridium perfringens ATCC 13124 4201937 YP_696916.1 CDS CPF_2502 NC_008261.1 2774242 2775765 R lipoprotein complement(2774242..2775765) Clostridium perfringens ATCC 13124 4201087 YP_696917.1 CDS CPF_2503 NC_008261.1 2775782 2777197 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2775782..2777197) Clostridium perfringens ATCC 13124 4203033 YP_696918.1 CDS CPF_2504 NC_008261.1 2777378 2778061 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2777378..2778061) Clostridium perfringens ATCC 13124 4203399 YP_696919.1 CDS CPF_2508 NC_008261.1 2783830 2784399 R identified by match to protein family HMM PF02417; chromate transport protein complement(2783830..2784399) Clostridium perfringens ATCC 13124 4201355 YP_696920.1 CDS CPF_2509 NC_008261.1 2784386 2784937 R identified by match to protein family HMM PF02417; chromate transport protein complement(2784386..2784937) Clostridium perfringens ATCC 13124 4202268 YP_696921.1 CDS CPF_2510 NC_008261.1 2785365 2786078 D identified by similarity to GB:AAP09835.1; lipoprotein 2785365..2786078 Clostridium perfringens ATCC 13124 4202586 YP_696922.1 CDS CPF_2511 NC_008261.1 2786062 2786223 D hypothetical protein 2786062..2786223 Clostridium perfringens ATCC 13124 4201992 YP_696923.1 CDS pepD NC_008261.1 2786410 2787861 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(2786410..2787861) Clostridium perfringens ATCC 13124 4200941 YP_696924.1 CDS CPF_2534 NC_008261.1 2790232 2790702 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; Ser/Thr protein phosphatase complement(2790232..2790702) Clostridium perfringens ATCC 13124 4203258 YP_696925.1 CDS CPF_2535 NC_008261.1 2790714 2791328 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(2790714..2791328) Clostridium perfringens ATCC 13124 4201974 YP_696926.1 CDS rph NC_008261.1 2791330 2792076 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(2791330..2792076) Clostridium perfringens ATCC 13124 4201488 YP_696927.1 CDS CPF_2537 NC_008261.1 2792289 2794001 D identified by similarity to PIR:B97228; hypothetical protein 2792289..2794001 Clostridium perfringens ATCC 13124 4201931 YP_696928.1 CDS CPF_2538 NC_008261.1 2794270 2795790 R identified by match to protein family HMM PF00496; solute-binding family 5 protein complement(2794270..2795790) Clostridium perfringens ATCC 13124 4202527 YP_696929.1 CDS CPF_2539 NC_008261.1 2796948 2797412 R hypothetical protein complement(2796948..2797412) Clostridium perfringens ATCC 13124 4202561 YP_696930.1 CDS CPF_2540 NC_008261.1 2797536 2797859 D identified by similarity to PIR:D97228; hypothetical protein 2797536..2797859 Clostridium perfringens ATCC 13124 4201149 YP_696931.1 CDS ligA NC_008261.1 2797896 2799884 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2797896..2799884) Clostridium perfringens ATCC 13124 4202605 YP_696932.1 CDS pcrA NC_008261.1 2799922 2802177 R identified by similarity to SP:P56255; match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(2799922..2802177) Clostridium perfringens ATCC 13124 4202456 YP_696933.1 CDS CPF_2543 NC_008261.1 2802389 2803177 R hypothetical protein complement(2802389..2803177) Clostridium perfringens ATCC 13124 4203445 YP_696934.1 CDS CPF_2544 NC_008261.1 2803194 2803742 R hypothetical protein complement(2803194..2803742) Clostridium perfringens ATCC 13124 4203073 YP_696935.1 CDS CPF_2545 NC_008261.1 2803744 2804415 R identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; anchor protein complement(2803744..2804415) Clostridium perfringens ATCC 13124 4201003 YP_696936.1 CDS CPF_2546 NC_008261.1 2804968 2805687 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; 16S pseudouridylate synthase complement(2804968..2805687) Clostridium perfringens ATCC 13124 4201980 YP_696937.1 CDS CPF_2547 NC_008261.1 2806061 2808121 R identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein complement(2806061..2808121) Clostridium perfringens ATCC 13124 4203127 YP_696938.1 CDS CPF_2548 NC_008261.1 2808494 2808943 R hypothetical protein complement(2808494..2808943) Clostridium perfringens ATCC 13124 4202074 YP_696939.1 CDS pgi NC_008261.1 2809141 2810493 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2809141..2810493) Clostridium perfringens ATCC 13124 4202200 YP_696940.1 CDS CPF_2550 NC_008261.1 2810523 2810732 R identified by similarity to GB:BAD71068.1; hypothetical protein complement(2810523..2810732) Clostridium perfringens ATCC 13124 4201948 YP_696941.1 CDS CPF_2551 NC_008261.1 2810934 2811902 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(2810934..2811902) Clostridium perfringens ATCC 13124 4201121 YP_696942.1 CDS CPF_2552 NC_008261.1 2811903 2812880 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(2811903..2812880) Clostridium perfringens ATCC 13124 4202901 YP_696943.1 CDS CPF_2553 NC_008261.1 2812894 2813808 R identified by similarity to SP:P94312; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(2812894..2813808) Clostridium perfringens ATCC 13124 4203107 YP_696944.1 CDS CPF_2554 NC_008261.1 2813823 2814788 R identified by similarity to SP:P42062; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(2813823..2814788) Clostridium perfringens ATCC 13124 4201585 YP_696945.1 CDS CPF_2555 NC_008261.1 2814863 2816605 R identified by similarity to SP:P42061; match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein complement(2814863..2816605) Clostridium perfringens ATCC 13124 4202848 YP_696946.1 CDS CPF_2556 NC_008261.1 2817237 2818529 D identified by match to protein family HMM PF07690; major facilitator family transporter 2817237..2818529 Clostridium perfringens ATCC 13124 4202563 YP_696947.1 CDS guaA NC_008261.1 2818882 2820411 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2818882..2820411) Clostridium perfringens ATCC 13124 4202459 YP_696948.1 CDS guaB NC_008261.1 2820518 2821972 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2820518..2821972) Clostridium perfringens ATCC 13124 4203566 YP_696949.1 CDS CPF_2559 NC_008261.1 2822682 2825303 R hypothetical protein complement(2822682..2825303) Clostridium perfringens ATCC 13124 4201230 YP_696950.1 CDS CPF_2560 NC_008261.1 2825327 2825887 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein complement(2825327..2825887) Clostridium perfringens ATCC 13124 4203397 YP_696951.1 CDS CPF_2561 NC_008261.1 2825913 2828021 R hypothetical protein complement(2825913..2828021) Clostridium perfringens ATCC 13124 4203682 YP_696952.1 CDS CPF_2562 NC_008261.1 2828026 2829027 R hypothetical protein complement(2828026..2829027) Clostridium perfringens ATCC 13124 4203117 YP_696953.1 CDS CPF_2563 NC_008261.1 2829048 2830265 R hypothetical protein complement(2829048..2830265) Clostridium perfringens ATCC 13124 4203052 YP_696954.1 CDS CPF_2564 NC_008261.1 2830255 2830821 R hypothetical protein complement(2830255..2830821) Clostridium perfringens ATCC 13124 4201461 YP_696955.1 CDS CPF_2565 NC_008261.1 2830836 2831951 R identified by similarity to PIR:S77726; match to protein family HMM TIGR01175; type IV pilus assembly protein PilM complement(2830836..2831951) Clostridium perfringens ATCC 13124 4202103 YP_696956.1 CDS CPF_2566 NC_008261.1 2832064 2832564 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(2832064..2832564) Clostridium perfringens ATCC 13124 4202467 YP_696957.1 CDS CPF_2567 NC_008261.1 2832577 2833041 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(2832577..2833041) Clostridium perfringens ATCC 13124 4201200 YP_696958.1 CDS CPF_2568 NC_008261.1 2833099 2833626 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(2833099..2833626) Clostridium perfringens ATCC 13124 4201268 YP_696959.1 CDS CPF_2569 NC_008261.1 2833642 2834847 R identified by match to protein family HMM PF00482; type II secretion system protein F complement(2833642..2834847) Clostridium perfringens ATCC 13124 4203820 YP_696960.1 CDS CPF_2570 NC_008261.1 2834874 2836562 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; secretion system protein E complement(2834874..2836562) Clostridium perfringens ATCC 13124 4203497 YP_696961.1 CDS CPF_2571 NC_008261.1 2836632 2837375 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; Type IV leader peptidase complement(2836632..2837375) Clostridium perfringens ATCC 13124 4202724 YP_696962.1 CDS CPF_2572 NC_008261.1 2837652 2838074 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(2837652..2838074) Clostridium perfringens ATCC 13124 4202104 YP_696963.1 CDS groEL NC_008261.1 2838740 2840359 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(2838740..2840359) Clostridium perfringens ATCC 13124 4201796 YP_696964.1 CDS groES NC_008261.1 2840414 2840698 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2840414..2840698) Clostridium perfringens ATCC 13124 4203708 YP_696965.1 CDS CPF_2575 NC_008261.1 2841071 2841721 D identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein 2841071..2841721 Clostridium perfringens ATCC 13124 4201555 YP_696966.1 CDS CPF_2576 NC_008261.1 2841870 2842175 D identified by similarity to GB:AAV96664.1; hypothetical protein 2841870..2842175 Clostridium perfringens ATCC 13124 4203439 YP_696967.1 CDS CPF_2577 NC_008261.1 2842298 2843236 R identified by match to protein family HMM PF00730; match to protein family HMM PF07934; 8-oxoguanine DNA glycosylase complement(2842298..2843236) Clostridium perfringens ATCC 13124 4203162 YP_696968.1 CDS CPF_2578 NC_008261.1 2843246 2843650 R identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909; hypothetical protein complement(2843246..2843650) Clostridium perfringens ATCC 13124 4203111 YP_696969.1 CDS CPF_2579 NC_008261.1 2843892 2844392 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228; signal peptidase I complement(2843892..2844392) Clostridium perfringens ATCC 13124 4203530 YP_696970.1 CDS CPF_2580 NC_008261.1 2844534 2846234 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2844534..2846234) Clostridium perfringens ATCC 13124 4202066 YP_696971.1 CDS hbd NC_008261.1 2846494 2847342 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(2846494..2847342) Clostridium perfringens ATCC 13124 4202695 YP_696972.1 CDS CPF_2582 NC_008261.1 2847456 2848463 R identified by match to protein family HMM PF00766; match to protein family HMM PF01012; 3-hydroxybutyryl-CoA dehydrogenase complement(2847456..2848463) Clostridium perfringens ATCC 13124 4202469 YP_696973.1 CDS CPF_2583 NC_008261.1 2848485 2849264 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein complement(2848485..2849264) Clostridium perfringens ATCC 13124 4203356 YP_696974.1 CDS bcd NC_008261.1 2849283 2850422 R identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase complement(2849283..2850422) Clostridium perfringens ATCC 13124 4203286 YP_696975.1 CDS crt NC_008261.1 2850469 2851251 R catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase complement(2850469..2851251) Clostridium perfringens ATCC 13124 4201220 YP_696976.1 CDS CPF_2586 NC_008261.1 2851514 2852152 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2851514..2852152) Clostridium perfringens ATCC 13124 4203900 YP_696977.1 CDS cadA NC_008261.1 2852618 2854834 R identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase complement(2852618..2854834) Clostridium perfringens ATCC 13124 4201614 YP_696978.1 CDS CPF_2588 NC_008261.1 2854850 2855209 R identified by similarity to SP:Q56405; match to protein family HMM PF01022; cadmium resistance transcriptional regulator CadC complement(2854850..2855209) Clostridium perfringens ATCC 13124 4202210 YP_696979.1 CDS CPF_2589 NC_008261.1 2855344 2855964 R identified by match to protein family HMM PF00392; match to protein family HMM PF02080; GntR family transcriptional regulator complement(2855344..2855964) Clostridium perfringens ATCC 13124 4201843 YP_696980.1 CDS CPF_2590 NC_008261.1 2856054 2856632 R identified by similarity to PIR:B97000; hypothetical protein complement(2856054..2856632) Clostridium perfringens ATCC 13124 4202477 YP_696981.1 CDS CPF_2591 NC_008261.1 2857017 2857463 R hypothetical protein complement(2857017..2857463) Clostridium perfringens ATCC 13124 4203410 YP_696982.1 CDS CPF_2592 NC_008261.1 2857812 2858300 R identified by similarity to SP:Q07024; mannose-6-phosphate isomerase complement(2857812..2858300) Clostridium perfringens ATCC 13124 4203253 YP_696983.1 CDS CPF_2593 NC_008261.1 2858295 2858726 D identified by similarity to GB:AAL94212.1; hypothetical protein 2858295..2858726 Clostridium perfringens ATCC 13124 4201615 YP_696984.1 CDS CPF_2594 NC_008261.1 2858899 2859681 R identified by similarity to GB:CAD77645.1; hypothetical protein complement(2858899..2859681) Clostridium perfringens ATCC 13124 4202584 YP_696985.1 CDS CPF_2595 NC_008261.1 2859714 2860430 R identified by similarity to GB:AAP24370.1; match to protein family HMM PF01863; hypothetical protein complement(2859714..2860430) Clostridium perfringens ATCC 13124 4202352 YP_696986.1 CDS hsdR NC_008261.1 2860476 2863655 R identified by similarity to GB:AAM00850.1; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit complement(2860476..2863655) Clostridium perfringens ATCC 13124 4202108 YP_696987.1 CDS CPF_2597 NC_008261.1 2864026 2865114 R identified by similarity to GB:AAS39764.1; hypothetical protein complement(2864026..2865114) Clostridium perfringens ATCC 13124 4202481 YP_696988.1 CDS hsdS NC_008261.1 2865161 2866414 R identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit complement(2865161..2866414) Clostridium perfringens ATCC 13124 4201421 YP_696989.1 CDS hsdM NC_008261.1 2866431 2867948 R identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(2866431..2867948) Clostridium perfringens ATCC 13124 4201458 YP_696990.1 CDS CPF_2600 NC_008261.1 2868111 2869184 D hypothetical protein 2868111..2869184 Clostridium perfringens ATCC 13124 4203238 YP_696991.1 CDS CPF_2601 NC_008261.1 2869248 2869631 D identified by similarity to SP:P06533; match to protein family HMM PF01381; transcriptional regulator 2869248..2869631 Clostridium perfringens ATCC 13124 4201987 YP_696992.1 CDS CPF_2602 NC_008261.1 2869842 2870000 D hypothetical protein 2869842..2870000 Clostridium perfringens ATCC 13124 4202645 YP_696993.1 CDS CPF_2603 NC_008261.1 2869990 2871759 D identified by match to protein family HMM PF00239; resolvase 2869990..2871759 Clostridium perfringens ATCC 13124 4201041 YP_696994.1 CDS CPF_2604 NC_008261.1 2871743 2873401 D identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 2871743..2873401 Clostridium perfringens ATCC 13124 4203956 YP_696995.1 CDS CPF_2605 NC_008261.1 2873469 2873642 D hypothetical protein 2873469..2873642 Clostridium perfringens ATCC 13124 4202685 YP_696996.1 CDS CPF_2606 NC_008261.1 2873655 2875259 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase site-specific recombinase 2873655..2875259 Clostridium perfringens ATCC 13124 4202145 YP_696997.1 CDS CPF_2608 NC_008261.1 2875271 2876059 D identified by match to protein family HMM PF02163; membrane-associated zinc metalloprotease 2875271..2876059 Clostridium perfringens ATCC 13124 4202242 YP_696998.1 CDS CPF_2607 NC_008261.1 2875963 2876772 R identified by match to protein family HMM PF00483; nucleotidyl transferase complement(2875963..2876772) Clostridium perfringens ATCC 13124 4201295 YP_696999.1 CDS CPF_2609 NC_008261.1 2877009 2878388 R identified by match to protein family HMM PF00232; glycosyl hydrolase complement(2877009..2878388) Clostridium perfringens ATCC 13124 4201906 YP_697000.1 CDS CPF_2610 NC_008261.1 2879085 2880461 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(2879085..2880461) Clostridium perfringens ATCC 13124 4201262 YP_697001.1 CDS CPF_2611 NC_008261.1 2880612 2881322 R identified by similarity to GB:AAO36364.1; hypothetical protein complement(2880612..2881322) Clostridium perfringens ATCC 13124 4203043 YP_697002.1 CDS CPF_2612 NC_008261.1 2881431 2882372 D identified by similarity to GB:AAP11025.1; hypothetical protein 2881431..2882372 Clostridium perfringens ATCC 13124 4202430 YP_697003.1 CDS CPF_2613 NC_008261.1 2882619 2883515 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase complement(2882619..2883515) Clostridium perfringens ATCC 13124 4201765 YP_697004.1 CDS CPF_2614 NC_008261.1 2883537 2884550 R hypothetical protein complement(2883537..2884550) Clostridium perfringens ATCC 13124 4201353 YP_697005.1 CDS CPF_2615 NC_008261.1 2884611 2885288 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(2884611..2885288) Clostridium perfringens ATCC 13124 4202035 YP_697006.1 CDS ispF NC_008261.1 2885638 2886108 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2885638..2886108 Clostridium perfringens ATCC 13124 4203168 YP_697007.1 CDS CPF_2617 NC_008261.1 2886284 2887597 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(2886284..2887597) Clostridium perfringens ATCC 13124 4203077 YP_697008.1 CDS CPF_2618 NC_008261.1 2887935 2888777 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(2887935..2888777) Clostridium perfringens ATCC 13124 4201434 YP_697009.1 CDS CPF_2623 NC_008261.1 2889451 2890143 R hypothetical protein complement(2889451..2890143) Clostridium perfringens ATCC 13124 4203207 YP_697010.1 CDS CPF_2624 NC_008261.1 2890333 2890737 D identified by similarity to PIR:F97027; hypothetical protein 2890333..2890737 Clostridium perfringens ATCC 13124 4203668 YP_697011.1 CDS CPF_2625 NC_008261.1 2890796 2892205 R identified by match to protein family HMM PF00657; hypothetical protein complement(2890796..2892205) Clostridium perfringens ATCC 13124 4201763 YP_697012.1 CDS thrS NC_008261.1 2893473 2895404 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2893473..2895404 Clostridium perfringens ATCC 13124 4201920 YP_697013.1 CDS CPF_2632 NC_008261.1 2895873 2897567 R identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289; M3 family oligoendopeptidase complement(2895873..2897567) Clostridium perfringens ATCC 13124 4201307 YP_697014.1 CDS CPF_2633 NC_008261.1 2897663 2898241 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(2897663..2898241) Clostridium perfringens ATCC 13124 4202322 YP_697015.1 CDS CPF_2634 NC_008261.1 2898467 2899279 R identified by similarity to PIR:B97349; hypothetical protein complement(2898467..2899279) Clostridium perfringens ATCC 13124 4202399 YP_697016.1 CDS CPF_2635 NC_008261.1 2899493 2899663 R hypothetical protein complement(2899493..2899663) Clostridium perfringens ATCC 13124 4201422 YP_697017.1 CDS glmS NC_008261.1 2899683 2901515 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2899683..2901515) Clostridium perfringens ATCC 13124 4202209 YP_697018.1 CDS CPF_2637 NC_008261.1 2902307 2902831 D identified by match to protein family HMM PF02915; hypothetical protein 2902307..2902831 Clostridium perfringens ATCC 13124 4202053 YP_697019.1 CDS glmM NC_008261.1 2902981 2904327 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2902981..2904327) Clostridium perfringens ATCC 13124 4202526 YP_697020.1 CDS CPF_2639 NC_008261.1 2904800 2906092 D identified by similarity to GB:AAO79146.1; hypothetical protein 2904800..2906092 Clostridium perfringens ATCC 13124 4201925 YP_697021.1 CDS CPF_2640 NC_008261.1 2906353 2907285 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2906353..2907285) Clostridium perfringens ATCC 13124 4202419 YP_697022.1 CDS CPF_2642 NC_008261.1 2908599 2908916 R identified by similarity to PIR:A96964; match to protein family HMM PF07561; hypothetical protein complement(2908599..2908916) Clostridium perfringens ATCC 13124 4203388 YP_697023.1 CDS CPF_2643 NC_008261.1 2908982 2909281 R identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; TrpR-like protein YerC/YecD complement(2908982..2909281) Clostridium perfringens ATCC 13124 4203003 YP_697024.1 CDS CPF_2644 NC_008261.1 2909421 2910260 R identified by similarity to GB:AAM05996.1; match to protein family HMM PF01987; hypothetical protein complement(2909421..2910260) Clostridium perfringens ATCC 13124 4203955 YP_697025.1 CDS CPF_2645 NC_008261.1 2910377 2912395 R identified by match to protein family HMM PF06202; match to protein family HMM TIGR01561; glycogen debranching enzyme, type complement(2910377..2912395) Clostridium perfringens ATCC 13124 4201441 YP_697026.1 CDS glgP NC_008261.1 2912754 2915117 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen/starch/alpha-glucan phosphorylase complement(2912754..2915117) Clostridium perfringens ATCC 13124 4201703 YP_697027.1 CDS malQ NC_008261.1 2915110 2916603 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(2915110..2916603) Clostridium perfringens ATCC 13124 4201910 YP_697028.1 CDS CPF_2648 NC_008261.1 2916625 2918772 R identified by match to protein family HMM PF01055; glycosyl hydrolase complement(2916625..2918772) Clostridium perfringens ATCC 13124 4201665 YP_697029.1 CDS CPF_2649 NC_008261.1 2918796 2919809 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator complement(2918796..2919809) Clostridium perfringens ATCC 13124 4201721 YP_697030.1 CDS CPF_2650 NC_008261.1 2920104 2920997 R identified by similarity to SP:Q04699; match to protein family HMM PF00528; maltose/maltodextrin ABC transporter permease complement(2920104..2920997) Clostridium perfringens ATCC 13124 4202028 YP_697031.1 CDS CPF_2651 NC_008261.1 2920999 2921952 R identified by similarity to SP:P02916; match to protein family HMM PF00528; maltose/maltodextrin ABC transporter permease complement(2920999..2921952) Clostridium perfringens ATCC 13124 4201666 YP_697032.1 CDS CPF_2652 NC_008261.1 2922039 2923265 R identified by similarity to SP:P19576; match to protein family HMM PF01547; maltose/maltodextrin ABC transporter maltose/maltodextrin-binding protein complement(2922039..2923265) Clostridium perfringens ATCC 13124 4202317 YP_697033.1 CDS CPF_2653 NC_008261.1 2923723 2924664 R identified by similarity to PIR:H97297; hypothetical protein complement(2923723..2924664) Clostridium perfringens ATCC 13124 4203092 YP_697034.1 CDS CPF_2654 NC_008261.1 2924699 2925808 R identified by similarity to SP:P77481; match to protein family HMM PF00005; match to protein family HMM PF03459; maltose/maltodextrin ABC transporter ATP-binding protein complement(2924699..2925808) Clostridium perfringens ATCC 13124 4201118 YP_697035.1 CDS hydA NC_008261.1 2926027 2927745 R identified by similarity to GB:BAD29951.1; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; iron hydrogenase complement(2926027..2927745) Clostridium perfringens ATCC 13124 4202993 YP_697036.1 CDS buk NC_008261.1 2927971 2929041 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(2927971..2929041) Clostridium perfringens ATCC 13124 4202880 YP_697037.1 CDS ptb NC_008261.1 2929065 2929973 R catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase complement(2929065..2929973) Clostridium perfringens ATCC 13124 4202122 YP_697038.1 CDS CPF_2658 NC_008261.1 2930156 2931757 R identified by similarity to PIR:F97278; match to protein family HMM PF01266; match to protein family HMM PF07992; hypothetical protein complement(2930156..2931757) Clostridium perfringens ATCC 13124 4201013 YP_697039.1 CDS CPF_2659 NC_008261.1 2931833 2933158 R identified by similarity to PIR:G97278; match to protein family HMM PF07949; hypothetical protein complement(2931833..2933158) Clostridium perfringens ATCC 13124 4203064 YP_697040.1 CDS CPF_2660 NC_008261.1 2933125 2933982 R identified by similarity to PIR:H97278; match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(2933125..2933982) Clostridium perfringens ATCC 13124 4203834 YP_697041.1 CDS CPF_2661 NC_008261.1 2934143 2935105 D identified by similarity to PIR:A97279; hypothetical protein 2934143..2935105 Clostridium perfringens ATCC 13124 4201923 YP_697042.1 CDS CPF_2662 NC_008261.1 2935176 2935778 D identified by similarity to SP:P50739; match to protein family HMM PF07486; spore-cortex-lytic enzyme 2935176..2935778 Clostridium perfringens ATCC 13124 4201319 YP_697043.1 CDS CPF_2663 NC_008261.1 2935810 2936670 R identified by match to protein family HMM PF01134; match to protein family HMM PF07992; thioredoxin reductase complement(2935810..2936670) Clostridium perfringens ATCC 13124 4202629 YP_697044.1 CDS trx NC_008261.1 2936697 2937011 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(2936697..2937011) Clostridium perfringens ATCC 13124 4201375 YP_697045.1 CDS iadA NC_008261.1 2937128 2938297 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975; isoaspartyl dipeptidase complement(2937128..2938297) Clostridium perfringens ATCC 13124 4202058 YP_697046.1 CDS ptsI NC_008261.1 2938462 2940081 R identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(2938462..2940081) Clostridium perfringens ATCC 13124 4202338 YP_697047.1 CDS CPF_2667 NC_008261.1 2940556 2942562 D identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sigma-54 dependent transcriptional regulator/sensory box protein 2940556..2942562 Clostridium perfringens ATCC 13124 4202205 YP_697048.1 CDS rpsD NC_008261.1 2942733 2943326 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2942733..2943326) Clostridium perfringens ATCC 13124 4203009 YP_697049.1 CDS CPF_2669 NC_008261.1 2943583 2943717 D hypothetical protein 2943583..2943717 Clostridium perfringens ATCC 13124 4202258 YP_697050.1 CDS nrdF NC_008261.1 2943727 2944761 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(2943727..2944761) Clostridium perfringens ATCC 13124 4201574 YP_697051.1 CDS nrdA NC_008261.1 2944857 2947088 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2944857..2947088) Clostridium perfringens ATCC 13124 4201544 YP_697052.1 CDS CPF_2672 NC_008261.1 2947372 2947728 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family protein complement(2947372..2947728) Clostridium perfringens ATCC 13124 4203673 YP_697053.1 CDS CPF_2673 NC_008261.1 2947900 2949651 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2947900..2949651) Clostridium perfringens ATCC 13124 4203166 YP_697054.1 CDS drrA NC_008261.1 2949704 2950402 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2949704..2950402) Clostridium perfringens ATCC 13124 4202086 YP_697055.1 CDS CPF_2675 NC_008261.1 2950656 2951513 D identified by similarity to GB:AAM24676.1; match to protein family HMM PF02588; hypothetical protein 2950656..2951513 Clostridium perfringens ATCC 13124 4202815 YP_697056.1 CDS cwlD NC_008261.1 2951774 2952445 R identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883; N-acetylmuramoyl-L-alanine amidase complement(2951774..2952445) Clostridium perfringens ATCC 13124 4203691 YP_697057.1 CDS CPF_2677 NC_008261.1 2952636 2954249 R identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein complement(2952636..2954249) Clostridium perfringens ATCC 13124 4202032 YP_697058.1 CDS rpsI NC_008261.1 2954640 2955032 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2954640..2955032) Clostridium perfringens ATCC 13124 4201142 YP_697059.1 CDS rplM NC_008261.1 2955059 2955493 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2955059..2955493) Clostridium perfringens ATCC 13124 4201152 YP_697060.1 CDS truA NC_008261.1 2955640 2956374 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2955640..2956374) Clostridium perfringens ATCC 13124 4202055 YP_697061.1 CDS CPF_2681 NC_008261.1 2956532 2957338 R identified by match to protein family HMM PF02361; cobalt ABC transporter permease complement(2956532..2957338) Clostridium perfringens ATCC 13124 4203669 YP_697062.1 CDS cbiO NC_008261.1 2957354 2958211 R with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2957354..2958211) Clostridium perfringens ATCC 13124 4201086 YP_697063.1 CDS CPF_2683 NC_008261.1 2958196 2959041 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2958196..2959041) Clostridium perfringens ATCC 13124 4201035 YP_697064.1 CDS rplQ NC_008261.1 2959464 2959805 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2959464..2959805) Clostridium perfringens ATCC 13124 4203541 YP_697065.1 CDS rpoA NC_008261.1 2959822 2960769 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2959822..2960769) Clostridium perfringens ATCC 13124 4201297 YP_697066.1 CDS rpsD NC_008261.1 2960854 2961474 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2960854..2961474) Clostridium perfringens ATCC 13124 4201907 YP_697067.1 CDS rpsK NC_008261.1 2961498 2961893 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2961498..2961893) Clostridium perfringens ATCC 13124 4202027 YP_697068.1 CDS rpsM NC_008261.1 2961910 2962275 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2961910..2962275) Clostridium perfringens ATCC 13124 4203461 YP_697069.1 CDS rpmJ NC_008261.1 2962512 2962625 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2962512..2962625) Clostridium perfringens ATCC 13124 4202344 YP_697070.1 CDS infA NC_008261.1 2962638 2962856 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2962638..2962856) Clostridium perfringens ATCC 13124 4202457 YP_697071.1 CDS CPF_2691 NC_008261.1 2962864 2963172 R identified by similarity to PIR:G97282; hypothetical protein complement(2962864..2963172) Clostridium perfringens ATCC 13124 4202196 YP_697072.1 CDS map NC_008261.1 2963231 2963980 R identified by similarity to SP:P19994; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(2963231..2963980) Clostridium perfringens ATCC 13124 4201264 YP_697073.1 CDS adk NC_008261.1 2963980 2964630 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2963980..2964630) Clostridium perfringens ATCC 13124 4203848 YP_697074.1 CDS secY NC_008261.1 2964657 2965934 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2964657..2965934) Clostridium perfringens ATCC 13124 4201269 YP_697075.1 CDS rplO NC_008261.1 2965937 2966377 R late assembly protein; 50S ribosomal protein L15 complement(2965937..2966377) Clostridium perfringens ATCC 13124 4200960 YP_697076.1 CDS rpmD NC_008261.1 2966411 2966584 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2966411..2966584) Clostridium perfringens ATCC 13124 4201451 YP_697077.1 CDS rpsE NC_008261.1 2966596 2967093 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2966596..2967093) Clostridium perfringens ATCC 13124 4202375 YP_697078.1 CDS rplR NC_008261.1 2967114 2967473 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2967114..2967473) Clostridium perfringens ATCC 13124 4202493 YP_697079.1 CDS rplF NC_008261.1 2967504 2968043 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2967504..2968043) Clostridium perfringens ATCC 13124 4201332 YP_697080.1 CDS rpsH NC_008261.1 2968140 2968538 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2968140..2968538) Clostridium perfringens ATCC 13124 4203886 YP_697081.1 CDS rpsN NC_008261.1 2968572 2968757 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2968572..2968757) Clostridium perfringens ATCC 13124 4201608 YP_697082.1 CDS rplE NC_008261.1 2968774 2969313 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2968774..2969313) Clostridium perfringens ATCC 13124 4201476 YP_697083.1 CDS rplX NC_008261.1 2969336 2969650 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2969336..2969650) Clostridium perfringens ATCC 13124 4203804 YP_697084.1 CDS rplN NC_008261.1 2969674 2970042 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2969674..2970042) Clostridium perfringens ATCC 13124 4201539 YP_697085.1 CDS rpsQ NC_008261.1 2970073 2970327 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2970073..2970327) Clostridium perfringens ATCC 13124 4202768 YP_697086.1 CDS rpmC NC_008261.1 2970349 2970558 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2970349..2970558) Clostridium perfringens ATCC 13124 4201364 YP_697087.1 CDS rplP NC_008261.1 2970558 2970992 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2970558..2970992) Clostridium perfringens ATCC 13124 4201383 YP_697088.1 CDS rpsC NC_008261.1 2971023 2971691 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2971023..2971691) Clostridium perfringens ATCC 13124 4202001 YP_697089.1 CDS rplV NC_008261.1 2971712 2972047 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2971712..2972047) Clostridium perfringens ATCC 13124 4203954 YP_697090.1 CDS rpsS NC_008261.1 2972075 2972356 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2972075..2972356) Clostridium perfringens ATCC 13124 4203345 YP_697091.1 CDS rplB NC_008261.1 2972427 2973260 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2972427..2973260) Clostridium perfringens ATCC 13124 4203717 YP_697092.1 CDS rplW NC_008261.1 2973315 2973608 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2973315..2973608) Clostridium perfringens ATCC 13124 4202310 YP_697093.1 CDS rplD NC_008261.1 2973608 2974222 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2973608..2974222) Clostridium perfringens ATCC 13124 4203864 YP_697094.1 CDS rplC NC_008261.1 2974247 2974876 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2974247..2974876) Clostridium perfringens ATCC 13124 4202163 YP_697095.1 CDS rpsJ NC_008261.1 2974959 2975267 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2974959..2975267) Clostridium perfringens ATCC 13124 4203188 YP_697096.1 CDS tuf NC_008261.1 2975963 2977156 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2975963..2977156) Clostridium perfringens ATCC 13124 4201584 YP_697097.1 CDS fusA NC_008261.1 2977229 2979295 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2977229..2979295) Clostridium perfringens ATCC 13124 4203800 YP_697098.1 CDS rpsG NC_008261.1 2979376 2979846 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2979376..2979846) Clostridium perfringens ATCC 13124 4203748 YP_697099.1 CDS rpsL NC_008261.1 2980006 2980386 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2980006..2980386) Clostridium perfringens ATCC 13124 4202846 YP_697100.1 CDS CPF_2720 NC_008261.1 2980444 2980683 R ribosomal protein L7AE family protein complement(2980444..2980683) Clostridium perfringens ATCC 13124 4201177 YP_697101.1 CDS rpoC NC_008261.1 2980796 2984332 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2980796..2984332) Clostridium perfringens ATCC 13124 4203197 YP_697102.1 CDS rpoB NC_008261.1 2984412 2988116 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2984412..2988116) Clostridium perfringens ATCC 13124 4201802 YP_697103.1 CDS rplL NC_008261.1 2988421 2988786 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(2988421..2988786) Clostridium perfringens ATCC 13124 4203099 YP_697104.1 CDS rplJ NC_008261.1 2988841 2989341 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(2988841..2989341) Clostridium perfringens ATCC 13124 4203355 YP_697105.1 CDS rplA NC_008261.1 2989558 2990247 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(2989558..2990247) Clostridium perfringens ATCC 13124 4201132 YP_697106.1 CDS rplK NC_008261.1 2990305 2990730 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(2990305..2990730) Clostridium perfringens ATCC 13124 4201631 YP_697107.1 CDS nusG NC_008261.1 2990805 2991326 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(2990805..2991326) Clostridium perfringens ATCC 13124 4203772 YP_697108.1 CDS secE NC_008261.1 2991364 2991588 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(2991364..2991588) Clostridium perfringens ATCC 13124 4201541 YP_697109.1 CDS rpmG NC_008261.1 2991642 2991791 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(2991642..2991791) Clostridium perfringens ATCC 13124 4202232 YP_697110.1 CDS tuf NC_008261.1 2991974 2993167 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2991974..2993167) Clostridium perfringens ATCC 13124 4203723 YP_697111.1 CDS sigH NC_008261.1 2993392 2994039 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(2993392..2994039) Clostridium perfringens ATCC 13124 4202433 YP_697112.1 CDS CPF_2733 NC_008261.1 2994120 2994629 R identified by similarity to GB:AAO37069.1; match to protein family HMM PF05991; hypothetical protein complement(2994120..2994629) Clostridium perfringens ATCC 13124 4203098 YP_697113.1 CDS CPF_2734 NC_008261.1 2994645 2995514 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase complement(2994645..2995514) Clostridium perfringens ATCC 13124 4201711 YP_697114.1 CDS thyX NC_008261.1 2995537 2996274 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(2995537..2996274) Clostridium perfringens ATCC 13124 4203220 YP_697115.2 CDS CPF_2736 NC_008261.1 2996290 2996700 R identified by similarity to PIR:B97288; match to protein family HMM PF00636; hypothetical protein complement(2996290..2996700) Clostridium perfringens ATCC 13124 4201040 YP_697116.1 CDS cysS NC_008261.1 2996927 2998327 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2996927..2998327) Clostridium perfringens ATCC 13124 4203390 YP_697117.1 CDS proS NC_008261.1 2998432 3000144 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(2998432..3000144) Clostridium perfringens ATCC 13124 4203146 YP_697118.1 CDS ispD NC_008261.1 3000499 3001176 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3000499..3001176) Clostridium perfringens ATCC 13124 4202885 YP_697119.1 CDS CPF_2740 NC_008261.1 3001190 3002296 R identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein complement(3001190..3002296) Clostridium perfringens ATCC 13124 4203477 YP_697120.1 CDS CPF_2741 NC_008261.1 3002608 3003009 D identified by similarity to GB:AAO37078.1; hypothetical protein 3002608..3003009 Clostridium perfringens ATCC 13124 4203110 YP_697121.1 CDS radA NC_008261.1 3004125 3005486 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3004125..3005486) Clostridium perfringens ATCC 13124 4201257 YP_697122.1 CDS nagB NC_008261.1 3005737 3006465 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(3005737..3006465) Clostridium perfringens ATCC 13124 4202037 YP_697123.1 CDS CPF_2745 NC_008261.1 3006462 3007184 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3006462..3007184) Clostridium perfringens ATCC 13124 4203538 YP_697124.1 CDS CPF_2746 NC_008261.1 3007384 3007548 D hypothetical protein 3007384..3007548 Clostridium perfringens ATCC 13124 4201096 YP_697125.1 CDS CPF_2747 NC_008261.1 3007642 3007869 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; YruB family glutaredoxin-like protein 3007642..3007869 Clostridium perfringens ATCC 13124 4202131 YP_697126.1 CDS gapN NC_008261.1 3007991 3009439 R identified by similarity to SP:Q59931; match to protein family HMM PF00171; glyceraldehyde-3-phosphate dehydrogenase complement(3007991..3009439) Clostridium perfringens ATCC 13124 4203182 YP_697127.1 CDS CPF_2749 NC_008261.1 3009456 3009689 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; YruB family glutaredoxin-like protein complement(3009456..3009689) Clostridium perfringens ATCC 13124 4202155 YP_697128.1 CDS trxB NC_008261.1 3009692 3010630 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; thioredoxin-disulfide reductase complement(3009692..3010630) Clostridium perfringens ATCC 13124 4202622 YP_697129.1 CDS clpC NC_008261.1 3010907 3013351 R identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence MecB/ClpC complement(3010907..3013351) Clostridium perfringens ATCC 13124 4203713 YP_697130.1 CDS CPF_2752 NC_008261.1 3013376 3014389 R identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase complement(3013376..3014389) Clostridium perfringens ATCC 13124 4202687 YP_697131.1 CDS CPF_2753 NC_008261.1 3014373 3014909 R identified by similarity to PIR:E97292; hypothetical protein complement(3014373..3014909) Clostridium perfringens ATCC 13124 4201774 YP_697132.1 CDS CPF_2754 NC_008261.1 3014920 3015375 R identified by match to protein family HMM PF05848; transcriptional repressor complement(3014920..3015375) Clostridium perfringens ATCC 13124 4203318 YP_697133.1 CDS CPF_2755 NC_008261.1 3015592 3016245 D zinc-dependent hydrolase 3015592..3016245 Clostridium perfringens ATCC 13124 4202034 YP_697134.1 CDS CPF_2756 NC_008261.1 3016296 3017978 R identified by similarity to GB:AAL56990.1; match to protein family HMM PF02875; Mur ligase complement(3016296..3017978) Clostridium perfringens ATCC 13124 4201417 YP_697135.1 CDS CPF_2757 NC_008261.1 3018096 3018266 R identified by similarity to SP:P22846; match to protein family HMM PF00037; ferredoxin complement(3018096..3018266) Clostridium perfringens ATCC 13124 4202402 YP_697136.1 CDS CPF_2758 NC_008261.1 3018435 3019340 R identified by match to protein family HMM PF04468; PSP1 domain-containing protein complement(3018435..3019340) Clostridium perfringens ATCC 13124 4203332 YP_697137.1 CDS CPF_2759 NC_008261.1 3019343 3020266 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(3019343..3020266) Clostridium perfringens ATCC 13124 4201991 YP_697138.1 CDS CPF_2760 NC_008261.1 3020288 3020617 R identified by similarity to PIR:E96936; match to protein family HMM PF06153; hypothetical protein complement(3020288..3020617) Clostridium perfringens ATCC 13124 4201985 YP_697139.1 CDS CPF_2761 NC_008261.1 3020774 3020929 R hypothetical protein complement(3020774..3020929) Clostridium perfringens ATCC 13124 4201795 YP_697140.1 CDS CPF_2762 NC_008261.1 3020946 3021536 R identified by similarity to PIR:D96936; guanylate kinase complement(3020946..3021536) Clostridium perfringens ATCC 13124 4203853 YP_697141.2 CDS CPF_2763 NC_008261.1 3021783 3023213 R identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase complement(3021783..3023213) Clostridium perfringens ATCC 13124 4203854 YP_697142.1 CDS CPF_2764 NC_008261.1 3023231 3023407 R identified by similarity to SP:P37534; csfB protein complement(3023231..3023407) Clostridium perfringens ATCC 13124 4202297 YP_697143.1 CDS CPF_2765 NC_008261.1 3023563 3024732 D amidohydrolase 3023563..3024732 Clostridium perfringens ATCC 13124 4200984 YP_697144.1 CDS CPF_2766 NC_008261.1 3024761 3025258 R identified by similarity to GB:AAO34865.1; hypothetical protein complement(3024761..3025258) Clostridium perfringens ATCC 13124 4202064 YP_697145.1 CDS CPF_2767 NC_008261.1 3025533 3026477 D identified by match to protein family HMM PF01544; cation transporter 3025533..3026477 Clostridium perfringens ATCC 13124 4203426 YP_697146.1 CDS CPF_2768 NC_008261.1 3026569 3027450 D identified by match to protein family HMM PF02016; LD-carboxypeptidase 3026569..3027450 Clostridium perfringens ATCC 13124 4203082 YP_697147.1 CDS murD NC_008261.1 3034751 3036127 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3034751..3036127) Clostridium perfringens ATCC 13124 4201746 YP_697148.1 CDS CPF_2775 NC_008261.1 3036438 3037481 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 3036438..3037481 Clostridium perfringens ATCC 13124 4202697 YP_697149.1 CDS CPF_2776 NC_008261.1 3037723 3038964 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(3037723..3038964) Clostridium perfringens ATCC 13124 4203177 YP_697150.1 CDS CPF_2777 NC_008261.1 3039056 3039925 R identified by match to protein family HMM PF02016; LD-carboxypeptidase complement(3039056..3039925) Clostridium perfringens ATCC 13124 4201839 YP_697151.1 CDS CPF_2778 NC_008261.1 3040098 3041216 R identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883; peptidase T-like protein complement(3040098..3041216) Clostridium perfringens ATCC 13124 4201322 YP_697152.1 CDS glyS NC_008261.1 3041404 3042807 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(3041404..3042807) Clostridium perfringens ATCC 13124 4202137 YP_697153.1 CDS lysS NC_008261.1 3043495 3045000 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3043495..3045000) Clostridium perfringens ATCC 13124 4202360 YP_697154.1 CDS greA NC_008261.1 3045026 3045502 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(3045026..3045502) Clostridium perfringens ATCC 13124 4202837 YP_697155.1 CDS CPF_2783 NC_008261.1 3045781 3046761 R identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase complement(3045781..3046761) Clostridium perfringens ATCC 13124 4200963 YP_697156.1 CDS CPF_2784 NC_008261.1 3046768 3047547 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(3046768..3047547) Clostridium perfringens ATCC 13124 4201464 YP_697157.1 CDS fhs NC_008261.1 3047750 3049420 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(3047750..3049420) Clostridium perfringens ATCC 13124 4203898 YP_697158.1 CDS ftsH NC_008261.1 3049622 3051427 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH complement(3049622..3051427) Clostridium perfringens ATCC 13124 4203350 YP_697159.1 CDS hpt NC_008261.1 3051502 3052053 R identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(3051502..3052053) Clostridium perfringens ATCC 13124 4203312 YP_697160.2 CDS tilS NC_008261.1 3052056 3053465 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase complement(3052056..3053465) Clostridium perfringens ATCC 13124 4201894 YP_697161.1 CDS spoIIE NC_008261.1 3053682 3056072 R identified by similarity to SP:P37475; match to protein family HMM PF07228; match to protein family HMM TIGR02865; stage II sporulation protein E complement(3053682..3056072) Clostridium perfringens ATCC 13124 4203810 YP_697162.1 CDS CPF_2797 NC_008261.1 3057379 3057783 R identified by match to protein family HMM PF00575; hypothetical protein complement(3057379..3057783) Clostridium perfringens ATCC 13124 4203012 YP_697163.1 CDS CPF_2798 NC_008261.1 3057843 3058163 R identified by match to protein family HMM PF04977; cell division protein FtsL complement(3057843..3058163) Clostridium perfringens ATCC 13124 4203442 YP_697164.1 CDS yabQ NC_008261.1 3058259 3058633 R identified by similarity to PIR:E97294; match to protein family HMM TIGR02893; spore cortex biosynthesis protein YabQ complement(3058259..3058633) Clostridium perfringens ATCC 13124 4203630 YP_697165.1 CDS yabP NC_008261.1 3058643 3058942 R identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892; sporulation protein YabP complement(3058643..3058942) Clostridium perfringens ATCC 13124 4203773 YP_697166.1 CDS CPF_2801 NC_008261.1 3059073 3059333 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(3059073..3059333) Clostridium perfringens ATCC 13124 4202859 YP_697167.1 CDS hup NC_008261.1 3059441 3059716 R identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU complement(3059441..3059716) Clostridium perfringens ATCC 13124 4201638 YP_697168.1 CDS CPF_2803 NC_008261.1 3059933 3061384 R identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein complement(3059933..3061384) Clostridium perfringens ATCC 13124 4201180 YP_697169.1 CDS spoVB NC_008261.1 3061414 3062946 R identified by match to protein family HMM PF01943; stage V sporulation protein B complement(3061414..3062946) Clostridium perfringens ATCC 13124 4203213 YP_697170.1 CDS spoVT NC_008261.1 3063139 3063687 R identified by similarity to SP:P37554; match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851; stage V sprulation protein T complement(3063139..3063687) Clostridium perfringens ATCC 13124 4203454 YP_697171.1 CDS prsA NC_008261.1 3063880 3064908 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase complement(3063880..3064908) Clostridium perfringens ATCC 13124 4202546 YP_697172.1 CDS mfd NC_008261.1 3065009 3068497 R identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(3065009..3068497) Clostridium perfringens ATCC 13124 4203160 YP_697173.1 CDS pth NC_008261.1 3068546 3069112 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3068546..3069112) Clostridium perfringens ATCC 13124 4202173 YP_697174.1 CDS CPF_2809 NC_008261.1 3069238 3070395 R identified by match to protein family HMM PF00595; PDZ domain-containing protein complement(3069238..3070395) Clostridium perfringens ATCC 13124 4203353 YP_697175.1 CDS CPF_2811 NC_008261.1 3071824 3072510 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(3071824..3072510) Clostridium perfringens ATCC 13124 4203749 YP_697176.1 CDS prsA NC_008261.1 3072782 3073741 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(3072782..3073741) Clostridium perfringens ATCC 13124 4200964 YP_697177.1 CDS glmU NC_008261.1 3073798 3075162 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3073798..3075162) Clostridium perfringens ATCC 13124 4201782 YP_697178.1 CDS CPF_2814 NC_008261.1 3075372 3075644 R stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG complement(3075372..3075644) Clostridium perfringens ATCC 13124 4201495 YP_697179.1 CDS purR NC_008261.1 3075755 3076558 R identified by similarity to SP:P37551; match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor complement(3075755..3076558) Clostridium perfringens ATCC 13124 4203811 YP_697180.2 CDS murC NC_008261.1 3076892 3078292 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3076892..3078292 Clostridium perfringens ATCC 13124 4201340 YP_697181.1 CDS CPF_2817 NC_008261.1 3078504 3079523 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 3078504..3079523 Clostridium perfringens ATCC 13124 4202986 YP_697182.1 CDS punA NC_008261.1 3079639 3080457 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3079639..3080457 Clostridium perfringens ATCC 13124 4201229 YP_697183.1 CDS CPF_2819 NC_008261.1 3080537 3081763 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter 3080537..3081763 Clostridium perfringens ATCC 13124 4201940 YP_697184.2 CDS CPF_2820 NC_008261.1 3081839 3082915 R identified by match to protein family HMM PF00557; M24 family metallopeptidase complement(3081839..3082915) Clostridium perfringens ATCC 13124 4202940 YP_697185.1 CDS CPF_2821 NC_008261.1 3083083 3083781 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; Ser/Thr protein phosphatase 3083083..3083781 Clostridium perfringens ATCC 13124 4201529 YP_697186.1 CDS CPF_2822 NC_008261.1 3083918 3085132 R identified by match to protein family HMM PF00173; heme/steroid binding domain-containing protein complement(3083918..3085132) Clostridium perfringens ATCC 13124 4201689 YP_697187.1 CDS asnC NC_008261.1 3085544 3086941 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 3085544..3086941 Clostridium perfringens ATCC 13124 4202179 YP_697188.1 CDS CPF_2824 NC_008261.1 3087255 3088736 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(3087255..3088736) Clostridium perfringens ATCC 13124 4203475 YP_697189.1 CDS CPF_2825 NC_008261.1 3088885 3089436 R hypothetical protein complement(3088885..3089436) Clostridium perfringens ATCC 13124 4203609 YP_697190.1 CDS nrdG NC_008261.1 3089566 3090075 R identified by similarity to GB:AAD00216.1; match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3089566..3090075) Clostridium perfringens ATCC 13124 4202195 YP_697191.1 CDS CPF_2827 NC_008261.1 3090184 3090792 D identified by match to protein family HMM PF01966; HD domain-containing protein 3090184..3090792 Clostridium perfringens ATCC 13124 4201586 YP_697192.1 CDS CPF_2828 NC_008261.1 3090850 3092241 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(3090850..3092241) Clostridium perfringens ATCC 13124 4200969 YP_697193.1 CDS add NC_008261.1 3092624 3093622 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(3092624..3093622) Clostridium perfringens ATCC 13124 4201385 YP_697194.1 CDS nrdD NC_008261.1 3094013 3096130 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3094013..3096130) Clostridium perfringens ATCC 13124 4201886 YP_697195.1 CDS CPF_2831 NC_008261.1 3096390 3097457 D identified by similarity to GB:BAC12708.1; hypothetical protein 3096390..3097457 Clostridium perfringens ATCC 13124 4202040 YP_697196.1 CDS CPF_2832 NC_008261.1 3097717 3098562 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 3097717..3098562 Clostridium perfringens ATCC 13124 4201277 YP_697197.1 CDS CPF_2833 NC_008261.1 3098565 3099005 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3098565..3099005 Clostridium perfringens ATCC 13124 4201777 YP_697198.1 CDS CPF_2834 NC_008261.1 3099057 3099245 R identified by similarity to SP:P29604; ferredoxin complement(3099057..3099245) Clostridium perfringens ATCC 13124 4202004 YP_697199.1 CDS CPF_2835 NC_008261.1 3099389 3100243 R identified by similarity to SP:P53381; ATPase complement(3099389..3100243) Clostridium perfringens ATCC 13124 4201808 YP_697200.1 CDS CPF_2836 NC_008261.1 3100264 3101103 R identified by similarity to GB:AAO34898.1; lipoprotein complement(3100264..3101103) Clostridium perfringens ATCC 13124 4201004 YP_697201.1 CDS lgt NC_008261.1 3101093 3101863 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3101093..3101863) Clostridium perfringens ATCC 13124 4201176 YP_697202.1 CDS CPF_2838 NC_008261.1 3101966 3102556 R identified by similarity to GB:AAO34896.1; hypothetical protein complement(3101966..3102556) Clostridium perfringens ATCC 13124 4201786 YP_697203.1 CDS CPF_2839 NC_008261.1 3102687 3104309 R identified by similarity to PIR:C97267; hypothetical protein complement(3102687..3104309) Clostridium perfringens ATCC 13124 4200953 YP_697204.1 CDS ksgA NC_008261.1 3104409 3105266 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(3104409..3105266) Clostridium perfringens ATCC 13124 4202275 YP_697205.1 CDS CPF_2841 NC_008261.1 3105278 3105826 R identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein complement(3105278..3105826) Clostridium perfringens ATCC 13124 4201628 YP_697206.1 CDS CPF_2842 NC_008261.1 3105967 3106989 R identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein complement(3105967..3106989) Clostridium perfringens ATCC 13124 4203581 YP_697207.1 CDS CPF_2843 NC_008261.1 3107233 3108003 R identified by match to protein family HMM PF01026; match to protein family HMM PF04909; match to protein family HMM TIGR00010; TatD family hydrolase complement(3107233..3108003) Clostridium perfringens ATCC 13124 4203039 YP_697208.1 CDS CPF_2844 NC_008261.1 3108022 3109521 R identified by similarity to PIR:AC1723; match to protein family HMM PF04286; hypothetical protein complement(3108022..3109521) Clostridium perfringens ATCC 13124 4203770 YP_697209.1 CDS CPF_2845 NC_008261.1 3109623 3110303 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 3109623..3110303 Clostridium perfringens ATCC 13124 4203444 YP_697210.1 CDS metG NC_008261.1 3110567 3112111 R identified by match to protein family HMM TIGR00398; methionyl-tRNA synthetase complement(3110567..3112111) Clostridium perfringens ATCC 13124 4201537 YP_697211.1 CDS metG NC_008261.1 3112212 3114149 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(3112212..3114149) Clostridium perfringens ATCC 13124 4201026 YP_697212.1 CDS CPF_2848 NC_008261.1 3114638 3115219 D identified by similarity to GB:AAO35783.1; hypothetical protein 3114638..3115219 Clostridium perfringens ATCC 13124 4202899 YP_697213.1 CDS CPF_2849 NC_008261.1 3115254 3115763 D hypothetical protein 3115254..3115763 Clostridium perfringens ATCC 13124 4202647 YP_697214.1 CDS CPF_2850 NC_008261.1 3115893 3117608 R identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(3115893..3117608) Clostridium perfringens ATCC 13124 4200992 YP_697215.1 CDS CPF_2851 NC_008261.1 3117817 3117954 R hypothetical protein complement(3117817..3117954) Clostridium perfringens ATCC 13124 4201082 YP_697216.1 CDS CPF_2852 NC_008261.1 3118034 3119647 R identified by match to protein family HMM PF03109; hypothetical protein complement(3118034..3119647) Clostridium perfringens ATCC 13124 4201611 YP_697217.1 CDS CPF_2853 NC_008261.1 3119787 3120125 R identified by similarity to PIR:B96904; hypothetical protein complement(3119787..3120125) Clostridium perfringens ATCC 13124 4202644 YP_697218.1 CDS pepP NC_008261.1 3120233 3121477 R identified by match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase complement(3120233..3121477) Clostridium perfringens ATCC 13124 4201533 YP_697219.1 CDS adhE NC_008261.1 3121625 3124222 R identified by similarity to SP:P33744; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(3121625..3124222) Clostridium perfringens ATCC 13124 4202720 YP_697220.1 CDS CPF_2856 NC_008261.1 3124651 3125169 R identified by similarity to SP:P35158; match to protein family HMM PF07670; spore maturation protein B complement(3124651..3125169) Clostridium perfringens ATCC 13124 4203034 YP_697221.1 CDS CPF_2857 NC_008261.1 3125181 3125759 R identified by similarity to SP:P35157; match to protein family HMM PF07670; spore maturation protein A complement(3125181..3125759) Clostridium perfringens ATCC 13124 4203776 YP_697222.1 CDS CPF_2858 NC_008261.1 3125874 3126053 D identified by similarity to GB:BAB67566.1; hypothetical protein 3125874..3126053 Clostridium perfringens ATCC 13124 4203646 YP_697223.1 CDS CPF_2859 NC_008261.1 3126093 3127460 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(3126093..3127460) Clostridium perfringens ATCC 13124 4202836 YP_697224.1 CDS CPF_2860 NC_008261.1 3127649 3128281 R hypothetical protein complement(3127649..3128281) Clostridium perfringens ATCC 13124 4203616 YP_697225.1 CDS CPF_2861 NC_008261.1 3128394 3129086 R identified by match to protein family HMM PF02683; membrane protein complement(3128394..3129086) Clostridium perfringens ATCC 13124 4201817 YP_697226.1 CDS CPF_2862 NC_008261.1 3129090 3129518 R hypothetical protein complement(3129090..3129518) Clostridium perfringens ATCC 13124 4202507 YP_697227.1 CDS CPF_2863 NC_008261.1 3129623 3130621 R identified by similarity to SP:P25144; match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein A complement(3129623..3130621) Clostridium perfringens ATCC 13124 4201806 YP_697228.1 CDS CPF_2864 NC_008261.1 3130953 3131282 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 3130953..3131282 Clostridium perfringens ATCC 13124 4203599 YP_697229.1 CDS ileS NC_008261.1 3131328 3134447 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(3131328..3134447) Clostridium perfringens ATCC 13124 4203554 YP_697230.1 CDS CPF_2866 NC_008261.1 3135114 3135329 D identified by match to protein family HMM PF04324; (2Fe-2S)-binding protein 3135114..3135329 Clostridium perfringens ATCC 13124 4203373 YP_697231.1 CDS CPF_2867 NC_008261.1 3135494 3136102 R hypothetical protein complement(3135494..3136102) Clostridium perfringens ATCC 13124 4203424 YP_697232.1 CDS CPF_2868 NC_008261.1 3136266 3138194 R identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein complement(3136266..3138194) Clostridium perfringens ATCC 13124 4202357 YP_697233.1 CDS CPF_2869 NC_008261.1 3138325 3138930 R identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357; hypothetical protein complement(3138325..3138930) Clostridium perfringens ATCC 13124 4203093 YP_697234.1 CDS tenA NC_008261.1 3138930 3139595 R identified by similarity to SP:P25052; match to protein family HMM PF03070; transcriptional activator TenA complement(3138930..3139595) Clostridium perfringens ATCC 13124 4201109 YP_697235.1 CDS CPF_2871 NC_008261.1 3140020 3140334 R hypothetical protein complement(3140020..3140334) Clostridium perfringens ATCC 13124 4201493 YP_697236.1 CDS CPF_2872 NC_008261.1 3140496 3141671 D identified by match to protein family HMM PF01170; methyltransferase 3140496..3141671 Clostridium perfringens ATCC 13124 4203625 YP_697237.1 CDS CPF_2873 NC_008261.1 3142044 3142391 R identified by similarity to PIR:B97063; match to protein family HMM PF07892; hypothetical protein complement(3142044..3142391) Clostridium perfringens ATCC 13124 4202795 YP_697238.1 CDS CPF_2874 NC_008261.1 3142394 3143647 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase complement(3142394..3143647) Clostridium perfringens ATCC 13124 4202843 YP_697239.1 CDS CPF_2875 NC_008261.1 3143660 3145090 R identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase complement(3143660..3145090) Clostridium perfringens ATCC 13124 4203750 YP_697240.1 CDS glpK NC_008261.1 3145256 3146758 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(3145256..3146758) Clostridium perfringens ATCC 13124 4200961 YP_697241.1 CDS glpP NC_008261.1 3146778 3147338 R identified by similarity to SP:P30300; match to protein family HMM PF04309; glycerol uptake operon antiterminator complement(3146778..3147338) Clostridium perfringens ATCC 13124 4201447 YP_697242.1 CDS glpF NC_008261.1 3147380 3148087 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(3147380..3148087) Clostridium perfringens ATCC 13124 4201826 YP_697243.1 CDS CPF_2879 NC_008261.1 3148162 3148278 R hypothetical protein complement(3148162..3148278) Clostridium perfringens ATCC 13124 4201578 YP_697244.1 CDS CPF_2880 NC_008261.1 3148353 3148796 R hypothetical protein complement(3148353..3148796) Clostridium perfringens ATCC 13124 4202014 YP_697245.1 CDS comB NC_008261.1 3149057 3149800 R catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase complement(3149057..3149800) Clostridium perfringens ATCC 13124 4203455 YP_697246.1 CDS CPF_2882 NC_008261.1 3149827 3150762 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein complement(3149827..3150762) Clostridium perfringens ATCC 13124 4200979 YP_697247.1 CDS CPF_2883 NC_008261.1 3150855 3151940 R lipoprotein complement(3150855..3151940) Clostridium perfringens ATCC 13124 4203158 YP_697248.1 CDS CPF_2884 NC_008261.1 3152100 3153158 D hypothetical protein 3152100..3153158 Clostridium perfringens ATCC 13124 4203534 YP_697249.1 CDS sleC NC_008261.1 3153204 3154520 R identified by similarity to PIR:I40824; match to protein family HMM PF01471; spore cortex-lytic enzyme SleC complement(3153204..3154520) Clostridium perfringens ATCC 13124 4201361 YP_697250.1 CDS cspC NC_008261.1 3154643 3156391 R identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082; serine protease C complement(3154643..3156391) Clostridium perfringens ATCC 13124 4202413 YP_697251.1 CDS cspB NC_008261.1 3156394 3158091 R identified by similarity to GB:BAB60712.1; match to protein family HMM PF00082; protease CspB complement(3156394..3158091) Clostridium perfringens ATCC 13124 4201610 YP_697252.1 CDS cspA NC_008261.1 3158107 3159843 R identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082; serine protease A complement(3158107..3159843) Clostridium perfringens ATCC 13124 4203031 YP_697253.1 CDS CPF_2889 NC_008261.1 3159984 3160655 R identified by match to protein family HMM PF00717; match to protein family HMM PF01381; DNA-binding protein complement(3159984..3160655) Clostridium perfringens ATCC 13124 4200995 YP_697254.1 CDS CPF_2890 NC_008261.1 3160657 3161031 R hypothetical protein complement(3160657..3161031) Clostridium perfringens ATCC 13124 4201209 YP_697255.1 CDS CPF_2891 NC_008261.1 3161060 3161572 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(3161060..3161572) Clostridium perfringens ATCC 13124 4200944 YP_697256.1 CDS CPF_2892 NC_008261.1 3161813 3162082 R identified by similarity to PIR:A97230; hypothetical protein complement(3161813..3162082) Clostridium perfringens ATCC 13124 4202312 YP_697257.1 CDS murI NC_008261.1 3162318 3163100 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(3162318..3163100) Clostridium perfringens ATCC 13124 4203366 YP_697258.1 CDS CPF_2894 NC_008261.1 3163406 3165307 D identified by match to protein family HMM PF00120; glutamine synthetase 3163406..3165307 Clostridium perfringens ATCC 13124 4203450 YP_697259.1 CDS CPF_2895 NC_008261.1 3165397 3165681 R identified by similarity to PIR:H96953; hypothetical protein complement(3165397..3165681) Clostridium perfringens ATCC 13124 4202133 YP_697260.1 CDS CPF_2896 NC_008261.1 3165921 3166562 R identified by match to protein family HMM PF04892; vanZ family protein complement(3165921..3166562) Clostridium perfringens ATCC 13124 4201014 YP_697261.1 CDS carB NC_008261.1 3167173 3170376 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(3167173..3170376) Clostridium perfringens ATCC 13124 4201549 YP_697262.1 CDS carA NC_008261.1 3170389 3171438 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3170389..3171438) Clostridium perfringens ATCC 13124 4201725 YP_697263.1 CDS CPF_2899 NC_008261.1 3172096 3172752 D identified by similarity to GB:AAO35287.1; hypothetical protein 3172096..3172752 Clostridium perfringens ATCC 13124 4203469 YP_697264.1 CDS CPF_2900 NC_008261.1 3173007 3174479 R identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase complement(3173007..3174479) Clostridium perfringens ATCC 13124 4202905 YP_697265.1 CDS CPF_2901 NC_008261.1 3174548 3175165 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(3174548..3175165) Clostridium perfringens ATCC 13124 4203380 YP_697266.1 CDS CPF_2902 NC_008261.1 3175478 3175789 R identified by match to protein family HMM PF02255; PTS system protein complement(3175478..3175789) Clostridium perfringens ATCC 13124 4201750 YP_697267.1 CDS proA NC_008261.1 3175890 3177137 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3175890..3177137) Clostridium perfringens ATCC 13124 4201846 YP_697268.1 CDS proB NC_008261.1 3177140 3177949 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3177140..3177949) Clostridium perfringens ATCC 13124 4203403 YP_697269.1 CDS CPF_2905 NC_008261.1 3178036 3178914 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase complement(3178036..3178914) Clostridium perfringens ATCC 13124 4202075 YP_697270.1 CDS CPF_2906 NC_008261.1 3178978 3179751 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(3178978..3179751) Clostridium perfringens ATCC 13124 4201279 YP_697271.1 CDS CPF_2907 NC_008261.1 3179937 3181229 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 3179937..3181229 Clostridium perfringens ATCC 13124 4203282 YP_697272.1 CDS CPF_2908 NC_008261.1 3181320 3181547 D hypothetical protein 3181320..3181547 Clostridium perfringens ATCC 13124 4201905 YP_697273.1 CDS CPF_2909 NC_008261.1 3181613 3183256 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(3181613..3183256) Clostridium perfringens ATCC 13124 4201918 YP_697274.2 CDS CPF_2910 NC_008261.1 3183567 3184916 D identified by match to protein family HMM PF07670; nucleoside recognition domain-containing protein 3183567..3184916 Clostridium perfringens ATCC 13124 4201994 YP_697275.1 CDS CPF_2911 NC_008261.1 3184958 3185746 R identified by similarity to PIR:G97319; hypothetical protein complement(3184958..3185746) Clostridium perfringens ATCC 13124 4202653 YP_697276.1 CDS maa NC_008261.1 3185879 3186466 D identified by match to protein family HMM PF00132; maltose transacetylase 3185879..3186466 Clostridium perfringens ATCC 13124 4201668 YP_697277.1 CDS msrA NC_008261.1 3186518 3186991 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 3186518..3186991 Clostridium perfringens ATCC 13124 4201503 YP_697278.1 CDS CPF_2914 NC_008261.1 3186993 3188477 R identified by match to protein family HMM PF02384; N-6 DNA methylase complement(3186993..3188477) Clostridium perfringens ATCC 13124 4202744 YP_697279.1 CDS CPF_2915 NC_008261.1 3188606 3190762 R identified by similarity to SP:P49022; phage infection protein complement(3188606..3190762) Clostridium perfringens ATCC 13124 4201897 YP_697280.1 CDS CPF_2916 NC_008261.1 3190785 3192950 R identified by similarity to SP:P49022; phage infection protein complement(3190785..3192950) Clostridium perfringens ATCC 13124 4202009 YP_697281.1 CDS CPF_2917 NC_008261.1 3193302 3193640 R identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; phnA family protein complement(3193302..3193640) Clostridium perfringens ATCC 13124 4201710 YP_697282.1 CDS CPF_2918 NC_008261.1 3193854 3194660 R hypothetical protein complement(3193854..3194660) Clostridium perfringens ATCC 13124 4201293 YP_697283.1 CDS CPF_2919 NC_008261.1 3194797 3195828 R identified by similarity to GB:BAC60887.1; hypothetical protein complement(3194797..3195828) Clostridium perfringens ATCC 13124 4201917 YP_697284.1 CDS CPF_2920 NC_008261.1 3195952 3197385 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(3195952..3197385) Clostridium perfringens ATCC 13124 4202523 YP_697285.1 CDS CPF_2921 NC_008261.1 3197638 3198006 R identified by similarity to PIR:H97140; hypothetical protein complement(3197638..3198006) Clostridium perfringens ATCC 13124 4202407 YP_697286.1 CDS CPF_2922 NC_008261.1 3198543 3198941 D identified by similarity to GB:AAS40903.1; hypothetical protein 3198543..3198941 Clostridium perfringens ATCC 13124 4201321 YP_697287.1 CDS CPF_2923 NC_008261.1 3199025 3201265 R identified by match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(3199025..3201265) Clostridium perfringens ATCC 13124 4202294 YP_697288.1 CDS CPF_2924 NC_008261.1 3201509 3201646 R hypothetical protein complement(3201509..3201646) Clostridium perfringens ATCC 13124 4203619 YP_697289.1 CDS CPF_2925 NC_008261.1 3201879 3202769 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase oxidoreductase 3201879..3202769 Clostridium perfringens ATCC 13124 4203381 YP_697290.2 CDS CPF_2926 NC_008261.1 3202927 3203085 R identified by similarity to PIR:A96978; hypothetical protein complement(3202927..3203085) Clostridium perfringens ATCC 13124 4201010 YP_697291.1 CDS CPF_2927 NC_008261.1 3203450 3203929 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(3203450..3203929) Clostridium perfringens ATCC 13124 4201779 YP_697292.1 CDS CPF_2928 NC_008261.1 3204175 3204546 R identified by similarity to GB:AAO75282.1; hypothetical protein complement(3204175..3204546) Clostridium perfringens ATCC 13124 4202440 YP_697293.1 CDS CPF_2929 NC_008261.1 3204776 3205417 R identified by similarity to PIR:C97100; match to protein family HMM PF06555; hypothetical protein complement(3204776..3205417) Clostridium perfringens ATCC 13124 4202181 YP_697294.1 CDS CPF_2930 NC_008261.1 3205524 3206024 R identified by match to protein family HMM PF02810; hypothetical protein complement(3205524..3206024) Clostridium perfringens ATCC 13124 4203906 YP_697295.1 CDS CPF_2931 NC_008261.1 3206168 3206722 R lipoprotein complement(3206168..3206722) Clostridium perfringens ATCC 13124 4203671 YP_697296.1 CDS CPF_2932 NC_008261.1 3206738 3207529 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(3206738..3207529) Clostridium perfringens ATCC 13124 4201018 YP_697297.1 CDS murA NC_008261.1 3207552 3208805 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3207552..3208805) Clostridium perfringens ATCC 13124 4201248 YP_697298.1 CDS CPF_2934 NC_008261.1 3209145 3209690 D identified by similarity to GB:AAO34821.1; hypothetical protein 3209145..3209690 Clostridium perfringens ATCC 13124 4202969 YP_697299.1 CDS CPF_2935 NC_008261.1 3209885 3210364 D identified by similarity to GB:AAO34793.1; hypothetical protein 3209885..3210364 Clostridium perfringens ATCC 13124 4201922 YP_697300.1 CDS CPF_2936 NC_008261.1 3210420 3210851 D identified by match to protein family HMM PF04657; hypothetical protein 3210420..3210851 Clostridium perfringens ATCC 13124 4203386 YP_697301.1 CDS CPF_2937 NC_008261.1 3210918 3212114 D identified by match to protein family HMM PF00082; subtilase 3210918..3212114 Clostridium perfringens ATCC 13124 4202301 YP_697302.1 CDS CPF_2938 NC_008261.1 3212117 3213169 R identified by match to protein family HMM PF01551; match to protein family HMM PF07501; M24/M37 family peptidase complement(3212117..3213169) Clostridium perfringens ATCC 13124 4203423 YP_697303.1 CDS CPF_2939 NC_008261.1 3213399 3214400 D identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 3213399..3214400 Clostridium perfringens ATCC 13124 4202328 YP_697304.1 CDS CPF_2940 NC_008261.1 3214397 3215392 D acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3214397..3215392 Clostridium perfringens ATCC 13124 4203537 YP_697305.1 CDS CPF_2951 NC_008261.1 3216512 3217081 R hypothetical protein complement(3216512..3217081) Clostridium perfringens ATCC 13124 4203416 YP_697306.1 CDS CPF_2952 NC_008261.1 3217277 3218524 D identified by match to protein family HMM PF03486; match to protein family HMM PF07992; hypothetical protein 3217277..3218524 Clostridium perfringens ATCC 13124 4201337 YP_697307.1 CDS CPF_2953 NC_008261.1 3218641 3219399 R identified by match to protein family HMM PF01643; acyl-ACP thioesterase complement(3218641..3219399) Clostridium perfringens ATCC 13124 4203002 YP_697308.1 CDS CPF_2954 NC_008261.1 3219422 3220162 R identified by match to protein family HMM PF01643; acyl-ACP thioesterase complement(3219422..3220162) Clostridium perfringens ATCC 13124 4202495 YP_697309.1 CDS CPF_2955 NC_008261.1 3220295 3220837 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin complement(3220295..3220837) Clostridium perfringens ATCC 13124 4203712 YP_697310.1 CDS CPF_2956 NC_008261.1 3221152 3221343 R hypothetical protein complement(3221152..3221343) Clostridium perfringens ATCC 13124 4202051 YP_697311.1 CDS CPF_2957 NC_008261.1 3221453 3221932 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(3221453..3221932) Clostridium perfringens ATCC 13124 4203198 YP_697312.1 CDS purA NC_008261.1 3222060 3223346 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3222060..3223346) Clostridium perfringens ATCC 13124 4202387 YP_697313.1 CDS sdhB NC_008261.1 3223827 3224507 D identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 3223827..3224507 Clostridium perfringens ATCC 13124 4201700 YP_697314.1 CDS sdhA NC_008261.1 3224508 3225389 D identified by similarity to SP:P33073; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 3224508..3225389 Clostridium perfringens ATCC 13124 4203000 YP_697315.1 CDS CPF_2961 NC_008261.1 3225625 3226797 D identified by match to protein family HMM PF01380; sugar isomerase 3225625..3226797 Clostridium perfringens ATCC 13124 4201753 YP_697316.1 CDS gatY NC_008261.1 3226817 3227674 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3226817..3227674 Clostridium perfringens ATCC 13124 4203504 YP_697317.1 CDS CPF_2963 NC_008261.1 3227731 3228456 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(3227731..3228456) Clostridium perfringens ATCC 13124 4202065 YP_697318.1 CDS CPF_2964 NC_008261.1 3228593 3228856 R preprotein translocase subunit complement(3228593..3228856) Clostridium perfringens ATCC 13124 4203897 YP_697319.1 CDS CPF_2965 NC_008261.1 3228873 3229277 R identified by match to protein family HMM PF03610; PTS system transporter subunit IIA complement(3228873..3229277) Clostridium perfringens ATCC 13124 4201094 YP_697320.1 CDS CPF_2966 NC_008261.1 3229450 3230256 R identified by similarity to SP:P08188; match to protein family HMM PF03613; PTS system transporter subunit IID complement(3229450..3230256) Clostridium perfringens ATCC 13124 4201329 YP_697321.1 CDS CPF_2967 NC_008261.1 3230256 3231047 R identified by similarity to SP:P08187; match to protein family HMM PF03609; PTS system transporter subunit IIC complement(3230256..3231047) Clostridium perfringens ATCC 13124 4201979 YP_697322.1 CDS CPF_2968 NC_008261.1 3231094 3231582 R identified by match to protein family HMM PF03830; PTS system transporter subunit IIB complement(3231094..3231582) Clostridium perfringens ATCC 13124 4201106 YP_697323.1 CDS proC NC_008261.1 3231860 3232660 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(3231860..3232660) Clostridium perfringens ATCC 13124 4203520 YP_697324.1 CDS dnaB NC_008261.1 3232838 3234172 R unwinds double stranded DNA; replicative DNA helicase complement(3232838..3234172) Clostridium perfringens ATCC 13124 4203173 YP_697325.1 CDS CPF_2971 NC_008261.1 3234588 3236447 R identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903; ATP-dependent protease complement(3234588..3236447) Clostridium perfringens ATCC 13124 4201430 YP_697326.1 CDS rplI NC_008261.1 3236502 3236948 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3236502..3236948) Clostridium perfringens ATCC 13124 4201766 YP_697327.1 CDS CPF_2973 NC_008261.1 3236950 3238908 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(3236950..3238908) Clostridium perfringens ATCC 13124 4203503 YP_697328.1 CDS CPF_2974 NC_008261.1 3238941 3239936 R hypothetical protein complement(3238941..3239936) Clostridium perfringens ATCC 13124 4201159 YP_697329.1 CDS CPF_2975 NC_008261.1 3239954 3240271 R identified by similarity to PIR:E97356; hypothetical protein complement(3239954..3240271) Clostridium perfringens ATCC 13124 4202832 YP_697330.1 CDS rpsR NC_008261.1 3240554 3240796 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3240554..3240796) Clostridium perfringens ATCC 13124 4203115 YP_697331.1 CDS ssb NC_008261.1 3240827 3241279 R identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(3240827..3241279) Clostridium perfringens ATCC 13124 4202041 YP_697332.1 CDS rpsF NC_008261.1 3241293 3241580 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3241293..3241580) Clostridium perfringens ATCC 13124 4202504 YP_697333.1 CDS CPF_2979 NC_008261.1 3241724 3241936 R identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107; hypothetical protein complement(3241724..3241936) Clostridium perfringens ATCC 13124 4203302 YP_697334.1 CDS CPF_2980 NC_008261.1 3241973 3242833 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(3241973..3242833) Clostridium perfringens ATCC 13124 4201425 YP_697335.1 CDS CPF_2981 NC_008261.1 3242866 3243099 R identified by similarity to GB:AAM24878.1; hypothetical protein complement(3242866..3243099) Clostridium perfringens ATCC 13124 4203779 YP_697336.1 CDS CPF_2982 NC_008261.1 3243259 3243906 D identified by match to protein family HMM PF01810; LysE family translocator protein 3243259..3243906 Clostridium perfringens ATCC 13124 4202417 YP_697337.1 CDS CPF_2983 NC_008261.1 3243918 3245078 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977; cysteine desulfurase 3243918..3245078 Clostridium perfringens ATCC 13124 4201704 YP_697338.1 CDS ytvI NC_008261.1 3245090 3246154 D identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872; sporulation integral membrane protein YtvI 3245090..3246154 Clostridium perfringens ATCC 13124 4202116 YP_697339.1 CDS yyaC NC_008261.1 3246204 3246794 D identified by similarity to GB:AAO34757.1; match to protein family HMM PF06866; match to protein family HMM TIGR02841; sporulation protein YyaC 3246204..3246794 Clostridium perfringens ATCC 13124 4202872 YP_697340.1 CDS CPF_2986 NC_008261.1 3246944 3247441 R identified by similarity to GB:AAO34756.1; hypothetical protein complement(3246944..3247441) Clostridium perfringens ATCC 13124 4202435 YP_697341.1 CDS CPF_2987 NC_008261.1 3247490 3248350 R identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J complement(3247490..3248350) Clostridium perfringens ATCC 13124 4203084 YP_697342.1 CDS soj NC_008261.1 3248351 3249124 R identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj complement(3248351..3249124) Clostridium perfringens ATCC 13124 4202169 YP_697343.1 CDS gidB NC_008261.1 3249374 3250093 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3249374..3250093) Clostridium perfringens ATCC 13124 4203784 YP_697344.1 CDS CPF_2990 NC_008261.1 3250112 3250240 R hypothetical protein complement(3250112..3250240) Clostridium perfringens ATCC 13124 4202371 YP_697345.1 CDS gidA NC_008261.1 3250270 3252162 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3250270..3252162) Clostridium perfringens ATCC 13124 4203024 YP_697346.1 CDS trmE NC_008261.1 3252177 3253553 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3252177..3253553) Clostridium perfringens ATCC 13124 4203662 YP_697347.1 CDS CPF_2993 NC_008261.1 3253895 3254518 R identified by similarity to SP:Q01620; match to protein family HMM PF01424; R3H domain-containing protein complement(3253895..3254518) Clostridium perfringens ATCC 13124 4202980 YP_697348.1 CDS oxaA NC_008261.1 3254560 3255276 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(3254560..3255276) Clostridium perfringens ATCC 13124 4201950 YP_697349.1 CDS CPF_2995 NC_008261.1 3255310 3255519 R identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(3255310..3255519) Clostridium perfringens ATCC 13124 4201249 YP_697350.1 CDS rnpA NC_008261.1 3255491 3255868 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3255491..3255868) Clostridium perfringens ATCC 13124 4202614 YP_697351.1 CDS rpmH NC_008261.1 3255929 3256063 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3255929..3256063) Clostridium perfringens ATCC 13124 4203010 CPF_0008 tRNA CPF_0008 NC_008261.1 14992 15068 D tRNA-Met 14992..15068 Clostridium perfringens ATCC 13124 4201071 CPF_0009 tRNA CPF_0009 NC_008261.1 15074 15149 D tRNA-Ala 15074..15149 Clostridium perfringens ATCC 13124 4202771 CPF_0016 tRNA CPF_0016 NC_008261.1 23280 23370 D tRNA-Ser 23280..23370 Clostridium perfringens ATCC 13124 4201518 CPF_0017 tRNA CPF_0017 NC_008261.1 23404 23494 D tRNA-Ser 23404..23494 Clostridium perfringens ATCC 13124 4203035 CPF_0019 tRNA CPF_0019 NC_008261.1 24130 24220 D tRNA-Ser 24130..24220 Clostridium perfringens ATCC 13124 4201646 CPF_0020 tRNA CPF_0020 NC_008261.1 24226 24316 D tRNA-Ser 24226..24316 Clostridium perfringens ATCC 13124 4203037 CPF_0031 tRNA CPF_0031 NC_008261.1 39585 39661 D tRNA-Arg 39585..39661 Clostridium perfringens ATCC 13124 4202773 CPF_0035 tRNA CPF_0035 NC_008261.1 42757 42831 D tRNA-Arg 42757..42831 Clostridium perfringens ATCC 13124 4202786 CPF_0048 tRNA CPF_0048 NC_008261.1 54210 54299 D tRNA-Ser 54210..54299 Clostridium perfringens ATCC 13124 4201643 CPF_0068 tRNA CPF_0068 NC_008261.1 77330 77405 D tRNA-Lys 77330..77405 Clostridium perfringens ATCC 13124 4201655 CPF_0073 tRNA CPF_0073 NC_008261.1 87165 87239 D tRNA-Asn 87165..87239 Clostridium perfringens ATCC 13124 4201522 CPF_0193 tRNA CPF_0193 NC_008261.1 236219 236294 D tRNA-Phe 236219..236294 Clostridium perfringens ATCC 13124 4202777 CPF_0229 tRNA CPF_0229 NC_008261.1 279286 279361 R tRNA-Met complement(279286..279361) Clostridium perfringens ATCC 13124 4201650 CPF_0260 tRNA CPF_0260 NC_008261.1 315485 315560 D tRNA-Phe 315485..315560 Clostridium perfringens ATCC 13124 4202780 CPF_0272 tRNA CPF_0272 NC_008261.1 328323 328398 R tRNA-Pro complement(328323..328398) Clostridium perfringens ATCC 13124 4201507 CPF_0489 tRNA CPF_0489 NC_008261.1 580328 580403 D tRNA-Met 580328..580403 Clostridium perfringens ATCC 13124 4201402 CPF_0573 tRNA CPF_0573 NC_008261.1 687930 688004 D tRNA-Glu 687930..688004 Clostridium perfringens ATCC 13124 4201653 CPF_0679 tRNA CPF_0679 NC_008261.1 810869 810957 R tRNA-Leu complement(810869..810957) Clostridium perfringens ATCC 13124 4201509 CPF_0944 tRNA CPF_0944 NC_008261.1 1098850 1098933 R tRNA-Gly complement(1098850..1098933) Clostridium perfringens ATCC 13124 4201510 CPF_0946 tRNA CPF_0946 NC_008261.1 1099769 1099843 D tRNA-Trp 1099769..1099843 Clostridium perfringens ATCC 13124 4202775 CPF_1633 tRNA CPF_1633 NC_008261.1 1850167 1850253 R tRNA-Leu complement(1850167..1850253) Clostridium perfringens ATCC 13124 4201648 CPF_2120 tRNA CPF_2120 NC_008261.1 2351711 2351801 D tRNA-Sec 2351711..2351801 Clostridium perfringens ATCC 13124 4201403 CPF_2153 tRNA CPF_2153 NC_008261.1 2394610 2394684 R tRNA-Cys complement(2394610..2394684) Clostridium perfringens ATCC 13124 4201065 CPF_2154 tRNA CPF_2154 NC_008261.1 2394690 2394763 R tRNA-Gly complement(2394690..2394763) Clostridium perfringens ATCC 13124 4201058 CPF_2155 tRNA CPF_2155 NC_008261.1 2394767 2394841 R tRNA-Gly complement(2394767..2394841) Clostridium perfringens ATCC 13124 4202787 CPF_2156 tRNA CPF_2156 NC_008261.1 2394847 2394922 R tRNA-Phe complement(2394847..2394922) Clostridium perfringens ATCC 13124 4202772 CPF_2246 tRNA CPF_2246 NC_008261.1 2494499 2494584 R tRNA-Leu complement(2494499..2494584) Clostridium perfringens ATCC 13124 4201641 CPF_2419 tRNA CPF_2419 NC_008261.1 2694346 2694421 R tRNA-Trp complement(2694346..2694421) Clostridium perfringens ATCC 13124 4201388 CPF_2420 tRNA CPF_2420 NC_008261.1 2694450 2694525 R tRNA-Trp complement(2694450..2694525) Clostridium perfringens ATCC 13124 4203036 CPF_2436 tRNA CPF_2436 NC_008261.1 2714178 2714263 R tRNA-Tyr complement(2714178..2714263) Clostridium perfringens ATCC 13124 4202788 CPF_2437 tRNA CPF_2437 NC_008261.1 2714269 2714344 R tRNA-Thr complement(2714269..2714344) Clostridium perfringens ATCC 13124 4201506 CPF_2438 tRNA CPF_2438 NC_008261.1 2714370 2714455 R tRNA-Tyr complement(2714370..2714455) Clostridium perfringens ATCC 13124 4201657 CPF_2439 tRNA CPF_2439 NC_008261.1 2714461 2714536 R tRNA-Thr complement(2714461..2714536) Clostridium perfringens ATCC 13124 4201508 CPF_2440 tRNA CPF_2440 NC_008261.1 2714555 2714630 R tRNA-Val complement(2714555..2714630) Clostridium perfringens ATCC 13124 4201400 CPF_2441 tRNA CPF_2441 NC_008261.1 2714635 2714720 R tRNA-Tyr complement(2714635..2714720) Clostridium perfringens ATCC 13124 4201394 CPF_2442 tRNA CPF_2442 NC_008261.1 2714726 2714801 R tRNA-Thr complement(2714726..2714801) Clostridium perfringens ATCC 13124 4201517 CPF_2505 tRNA CPF_2505 NC_008261.1 2778383 2778457 R tRNA-Asn complement(2778383..2778457) Clostridium perfringens ATCC 13124 4202785 CPF_2506 tRNA CPF_2506 NC_008261.1 2781517 2781593 R tRNA-Ile complement(2781517..2781593) Clostridium perfringens ATCC 13124 4201642 CPF_2507 tRNA CPF_2507 NC_008261.1 2781599 2781674 R tRNA-Ala complement(2781599..2781674) Clostridium perfringens ATCC 13124 4201396 CPF_2513 tRNA CPF_2513 NC_008261.1 2788043 2788119 R tRNA-Arg complement(2788043..2788119) Clostridium perfringens ATCC 13124 4201395 CPF_2514 tRNA CPF_2514 NC_008261.1 2788170 2788243 R tRNA-Gly complement(2788170..2788243) Clostridium perfringens ATCC 13124 4201063 CPF_2515 tRNA CPF_2515 NC_008261.1 2788247 2788321 R tRNA-Gly complement(2788247..2788321) Clostridium perfringens ATCC 13124 4201505 CPF_2516 tRNA CPF_2516 NC_008261.1 2788345 2788428 R tRNA-Leu complement(2788345..2788428) Clostridium perfringens ATCC 13124 4201515 CPF_2517 tRNA CPF_2517 NC_008261.1 2788439 2788514 R tRNA-Lys complement(2788439..2788514) Clostridium perfringens ATCC 13124 4201651 CPF_2518 tRNA CPF_2518 NC_008261.1 2788522 2788596 R tRNA-Gln complement(2788522..2788596) Clostridium perfringens ATCC 13124 4201404 CPF_2519 tRNA CPF_2519 NC_008261.1 2788602 2788677 R tRNA-His complement(2788602..2788677) Clostridium perfringens ATCC 13124 4201656 CPF_2520 tRNA CPF_2520 NC_008261.1 2788682 2788758 R tRNA-Arg complement(2788682..2788758) Clostridium perfringens ATCC 13124 4201393 CPF_2521 tRNA CPF_2521 NC_008261.1 2788794 2788867 R tRNA-Gly complement(2788794..2788867) Clostridium perfringens ATCC 13124 4201391 CPF_2522 tRNA CPF_2522 NC_008261.1 2788872 2788947 R tRNA-Pro complement(2788872..2788947) Clostridium perfringens ATCC 13124 4201401 CPF_2523 tRNA CPF_2523 NC_008261.1 2788953 2789029 R tRNA-Arg complement(2788953..2789029) Clostridium perfringens ATCC 13124 4201064 CPF_2524 tRNA CPF_2524 NC_008261.1 2789105 2789178 R tRNA-Gly complement(2789105..2789178) Clostridium perfringens ATCC 13124 4202776 CPF_2525 tRNA CPF_2525 NC_008261.1 2789183 2789257 R tRNA-Gly complement(2789183..2789257) Clostridium perfringens ATCC 13124 4201061 CPF_2526 tRNA CPF_2526 NC_008261.1 2789284 2789367 R tRNA-Leu complement(2789284..2789367) Clostridium perfringens ATCC 13124 4201647 CPF_2527 tRNA CPF_2527 NC_008261.1 2789378 2789453 R tRNA-Lys complement(2789378..2789453) Clostridium perfringens ATCC 13124 4201398 CPF_2528 tRNA CPF_2528 NC_008261.1 2789473 2789548 R tRNA-Lys complement(2789473..2789548) Clostridium perfringens ATCC 13124 4201512 CPF_2529 tRNA CPF_2529 NC_008261.1 2789555 2789629 R tRNA-Gln complement(2789555..2789629) Clostridium perfringens ATCC 13124 4201389 CPF_2530 tRNA CPF_2530 NC_008261.1 2789633 2789708 R tRNA-His complement(2789633..2789708) Clostridium perfringens ATCC 13124 4201649 CPF_2531 tRNA CPF_2531 NC_008261.1 2789713 2789789 R tRNA-Arg complement(2789713..2789789) Clostridium perfringens ATCC 13124 4202783 CPF_2532 tRNA CPF_2532 NC_008261.1 2789869 2789942 R tRNA-Gly complement(2789869..2789942) Clostridium perfringens ATCC 13124 4201070 CPF_2533 tRNA CPF_2533 NC_008261.1 2789947 2790022 R tRNA-Pro complement(2789947..2790022) Clostridium perfringens ATCC 13124 4201519 CPF_2619 tRNA CPF_2619 NC_008261.1 2888912 2888987 R tRNA-Lys complement(2888912..2888987) Clostridium perfringens ATCC 13124 4201516 CPF_2620 tRNA CPF_2620 NC_008261.1 2889032 2889105 R tRNA-Gly complement(2889032..2889105) Clostridium perfringens ATCC 13124 4201405 CPF_2621 tRNA CPF_2621 NC_008261.1 2889171 2889245 R tRNA-Gln complement(2889171..2889245) Clostridium perfringens ATCC 13124 4201069 CPF_2622 tRNA CPF_2622 NC_008261.1 2889249 2889325 R tRNA-Arg complement(2889249..2889325) Clostridium perfringens ATCC 13124 4201511 CPF_2626 tRNA CPF_2626 NC_008261.1 2892507 2892582 R tRNA-Lys complement(2892507..2892582) Clostridium perfringens ATCC 13124 4201520 CPF_2627 tRNA CPF_2627 NC_008261.1 2892601 2892674 R tRNA-Gly complement(2892601..2892674) Clostridium perfringens ATCC 13124 4201066 CPF_2628 tRNA CPF_2628 NC_008261.1 2892680 2892754 R tRNA-Gly complement(2892680..2892754) Clostridium perfringens ATCC 13124 4201068 CPF_2629 tRNA CPF_2629 NC_008261.1 2892772 2892845 R tRNA-Gly complement(2892772..2892845) Clostridium perfringens ATCC 13124 4202774 CPF_2630 tRNA CPF_2630 NC_008261.1 2892851 2892934 R tRNA-Leu complement(2892851..2892934) Clostridium perfringens ATCC 13124 4201387 CPF_2731 tRNA CPF_2731 NC_008261.1 2993234 2993309 R tRNA-Thr complement(2993234..2993309) Clostridium perfringens ATCC 13124 4201513 CPF_2769 tRNA CPF_2769 NC_008261.1 3027823 3027897 R tRNA-Cys complement(3027823..3027897) Clostridium perfringens ATCC 13124 4202778 CPF_2770 tRNA CPF_2770 NC_008261.1 3027902 3027977 R tRNA-Phe complement(3027902..3027977) Clostridium perfringens ATCC 13124 4203038 CPF_2771 tRNA CPF_2771 NC_008261.1 3029161 3029235 R tRNA-Asn complement(3029161..3029235) Clostridium perfringens ATCC 13124 4201652 CPF_2772 tRNA CPF_2772 NC_008261.1 3032414 3032490 R tRNA-Ile complement(3032414..3032490) Clostridium perfringens ATCC 13124 4201059 CPF_2773 tRNA CPF_2773 NC_008261.1 3032496 3032571 R tRNA-Ala complement(3032496..3032571) Clostridium perfringens ATCC 13124 4201060 CPF_2780 tRNA CPF_2780 NC_008261.1 3043265 3043339 R tRNA-Asn complement(3043265..3043339) Clostridium perfringens ATCC 13124 4202784 CPF_2790 tRNA CPF_2790 NC_008261.1 3056396 3056484 R tRNA-Leu complement(3056396..3056484) Clostridium perfringens ATCC 13124 4202781 CPF_2791 tRNA CPF_2791 NC_008261.1 3056501 3056577 R tRNA-Met complement(3056501..3056577) Clostridium perfringens ATCC 13124 4201654 CPF_2792 tRNA CPF_2792 NC_008261.1 3056581 3056656 R tRNA-Met complement(3056581..3056656) Clostridium perfringens ATCC 13124 4201392 CPF_2793 tRNA CPF_2793 NC_008261.1 3056664 3056752 R tRNA-Leu complement(3056664..3056752) Clostridium perfringens ATCC 13124 4201640 CPF_2794 tRNA CPF_2794 NC_008261.1 3056769 3056845 R tRNA-Met complement(3056769..3056845) Clostridium perfringens ATCC 13124 4201514 CPF_2795 tRNA CPF_2795 NC_008261.1 3056849 3056924 R tRNA-Met complement(3056849..3056924) Clostridium perfringens ATCC 13124 4201390 CPF_2796 tRNA CPF_2796 NC_008261.1 3056931 3057019 R tRNA-Leu complement(3056931..3057019) Clostridium perfringens ATCC 13124 4202782 CPF_2941 tRNA CPF_2941 NC_008261.1 3215484 3215559 R tRNA-Thr complement(3215484..3215559) Clostridium perfringens ATCC 13124 4202789 CPF_2942 tRNA CPF_2942 NC_008261.1 3215563 3215639 R tRNA-Asp complement(3215563..3215639) Clostridium perfringens ATCC 13124 4201067 CPF_2943 tRNA CPF_2943 NC_008261.1 3215651 3215726 R tRNA-Val complement(3215651..3215726) Clostridium perfringens ATCC 13124 4201397 CPF_2944 tRNA CPF_2944 NC_008261.1 3215734 3215808 R tRNA-Glu complement(3215734..3215808) Clostridium perfringens ATCC 13124 4201399 CPF_2945 tRNA CPF_2945 NC_008261.1 3215814 3215890 R tRNA-Asp complement(3215814..3215890) Clostridium perfringens ATCC 13124 4202779 CPF_2946 tRNA CPF_2946 NC_008261.1 3215905 3215980 R tRNA-Val complement(3215905..3215980) Clostridium perfringens ATCC 13124 4201644 CPF_2947 tRNA CPF_2947 NC_008261.1 3215987 3216061 R tRNA-Glu complement(3215987..3216061) Clostridium perfringens ATCC 13124 4201062 CPF_2948 tRNA CPF_2948 NC_008261.1 3216069 3216145 R tRNA-Asp complement(3216069..3216145) Clostridium perfringens ATCC 13124 4201645 CPF_2949 tRNA CPF_2949 NC_008261.1 3216159 3216234 R tRNA-Val complement(3216159..3216234) Clostridium perfringens ATCC 13124 4201521 CPF_2950 tRNA CPF_2950 NC_008261.1 3216239 3216313 R tRNA-Glu complement(3216239..3216313) Clostridium perfringens ATCC 13124 4201072 CPF_2998 rRNA rrsA NC_008261.1 10167 11688 D 16S ribosomal RNA 10167..11688 Clostridium perfringens ATCC 13124 4202954 CPF_2999 rRNA rrlA NC_008261.1 11869 14777 D 23S ribosomal RNA 11869..14777 Clostridium perfringens ATCC 13124 4202960 CPF_3000 rRNA rrfA NC_008261.1 14869 14996 D 5S ribosomal RNA 14869..14996 Clostridium perfringens ATCC 13124 4201073 CPF_3001 rRNA rrsB NC_008261.1 72550 74066 D 16S ribosomal RNA 72550..74066 Clostridium perfringens ATCC 13124 4201074 CPF_3002 rRNA rrlB NC_008261.1 74252 77159 D 23S ribosomal RNA 74252..77159 Clostridium perfringens ATCC 13124 4202948 CPF_3003 rRNA rrfB NC_008261.1 77208 77334 D 5S ribosomal RNA 77208..77334 Clostridium perfringens ATCC 13124 4202962 CPF_3004 rRNA rrsC NC_008261.1 82381 83902 D 16S ribosomal RNA 82381..83902 Clostridium perfringens ATCC 13124 4202959 CPF_3005 rRNA rrlC NC_008261.1 84083 86990 D 23S ribosomal RNA 84083..86990 Clostridium perfringens ATCC 13124 4202964 CPF_3006 rRNA rrfC NC_008261.1 87039 87165 D 5S ribosomal RNA 87039..87165 Clostridium perfringens ATCC 13124 4202956 CPF_3007 rRNA rrsD NC_008261.1 231432 232953 D 16S ribosomal RNA 231432..232953 Clostridium perfringens ATCC 13124 4202961 CPF_3008 rRNA rrlD NC_008261.1 233134 236041 D 23S ribosomal RNA 233134..236041 Clostridium perfringens ATCC 13124 4202963 CPF_3009 rRNA rrfD NC_008261.1 236091 236217 D 5S ribosomal RNA 236091..236217 Clostridium perfringens ATCC 13124 4202950 CPF_3010 rRNA rrsE NC_008261.1 310698 312219 D 16S ribosomal RNA 310698..312219 Clostridium perfringens ATCC 13124 4202955 CPF_3011 rRNA rrlE NC_008261.1 312400 315307 D 23S ribosomal RNA 312400..315307 Clostridium perfringens ATCC 13124 4202947 CPF_3012 rRNA rrfE NC_008261.1 315357 315483 D 5S ribosomal RNA 315357..315483 Clostridium perfringens ATCC 13124 4202953 CPF_3013 rRNA rrsF NC_008261.1 683148 684669 D 16S ribosomal RNA 683148..684669 Clostridium perfringens ATCC 13124 4202949 CPF_3014 rRNA rrlF NC_008261.1 684850 687757 D 23S ribosomal RNA 684850..687757 Clostridium perfringens ATCC 13124 4201075 CPF_3015 rRNA rrfF NC_008261.1 687807 687933 D 5S ribosomal RNA 687807..687933 Clostridium perfringens ATCC 13124 4202952 CPF_3017 rRNA rrlG NC_008261.1 2778510 2781417 R 23S ribosomal RNA complement(2778510..2781417) Clostridium perfringens ATCC 13124 4201076 CPF_3018 rRNA rrsG NC_008261.1 2781835 2783352 R 16S ribosomal RNA complement(2781835..2783352) Clostridium perfringens ATCC 13124 4202958 CPF_3019 rRNA rrfH NC_008261.1 3029234 3029360 R 5S ribosomal RNA complement(3029234..3029360) Clostridium perfringens ATCC 13124 4202946 CPF_3020 rRNA rrlH NC_008261.1 3029408 3032314 R 23S ribosomal RNA complement(3029408..3032314) Clostridium perfringens ATCC 13124 4202951 CPF_3021 rRNA rrsH NC_008261.1 3032732 3034249 R 16S ribosomal RNA complement(3032732..3034249) Clostridium perfringens ATCC 13124 4202957