-- dump date 20140619_045805 -- class Genbank::CDS -- table cds_note -- id note YP_266783.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_266784.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_266785.1 identified by similarity to SP:P13456; match to protein family HMM PF02463; match to protein family HMM TIGR00611 YP_266786.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_266787.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_266788.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_266789.1 identified by similarity to OMNI:NTL02AT0888 YP_266790.1 identified by similarity to OMNI:SO3280; match to protein family HMM PF04325 YP_266791.1 identified by similarity to SP:P26844; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_266792.1 identified by similarity to SP:P37618; match to protein family HMM PF01206 YP_266793.1 identified by similarity to GP:5822332; match to protein family HMM PF01464 YP_266795.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_266796.1 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_266797.1 identified by similarity to SP:P21166; match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_266799.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_266800.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_266801.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_266802.1 identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_266803.1 identified by similarity to OMNI:SO0033; match to protein family HMM PF01476 YP_266804.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_266805.1 identified by similarity to SP:P30853; match to protein family HMM PF04361 YP_266806.1 identified by similarity to SP:P39814; match to protein family HMM PF01396 YP_266807.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_266808.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway YP_266809.1 identified by similarity to GP:13096287; match to protein family HMM PF01300 YP_266811.1 identified by match to protein family HMM PF03922 YP_266812.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_266814.1 identified by similarity to OMNI:VC0058 YP_266817.1 identified by similarity to GB:AAN66393.1; match to protein family HMM PF00072 YP_266818.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_266823.1 identified by match to protein family HMM PF03899 YP_266824.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_266825.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_266826.1 identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144 YP_266827.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145 YP_266828.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962 YP_266829.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_266830.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_266831.1 identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_266833.1 identified by similarity to SP:P31215; match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_266834.1 identified by similarity to OMNI:SO2714 YP_266835.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_266836.1 identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_266837.1 identified by match to protein family HMM PF01839 YP_266838.1 identified by similarity to GP:1536827 YP_266840.1 identified by similarity to SP:P09127; match to protein family HMM PF04375 YP_266841.1 identified by similarity to SP:P09126; match to protein family HMM PF02602 YP_266842.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_266843.1 identified by similarity to SP:P27838; match to protein family HMM PF01491 YP_266844.1 identified by similarity to OMNI:NTL01SS02679 YP_266845.1 identified by similarity to SP:P46357; match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_266846.1 identified by similarity to OMNI:SO4307; match to protein family HMM PF04340 YP_266847.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_266848.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_266849.1 identified by similarity to GP:27361327; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_266850.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_266851.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_266854.1 identified by similarity to SP:P27028; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_266855.1 identified by similarity to GP:5257178; match to protein family HMM PF06934 YP_266856.1 identified by match to protein family HMM PF00903 YP_266857.1 identified by match to protein family HMM PF00903 YP_266858.1 identified by similarity to OMNI:SO3585 YP_266859.1 identified by similarity to OMNI:SO3584 YP_266860.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_266862.1 identified by similarity to GP:29895288; match to protein family HMM PF00892 YP_266863.1 identified by similarity to OMNI:NTL02SC5439 YP_266864.1 identified by similarity to SP:P71016; match to protein family HMM PF00171 YP_266866.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_266867.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_266868.1 identified by similarity to SP:P77559; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_266871.1 identified by similarity to SP:P31133; similarity to GB:AAK15487.1; match to protein family HMM PF01547 YP_266872.1 identified by match to protein family HMM PF00924 YP_266873.1 identified by similarity to GP:27359325 YP_266874.1 identified by similarity to GP:28809591; match to protein family HMM PF04337 YP_266875.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_266877.1 identified by similarity to GP:27355774 YP_266878.1 identified by match to protein family HMM TIGR01409 YP_266879.1 identified by similarity to OMNI:NTL01XF01490 YP_266880.1 identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 YP_266881.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_266885.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_266886.1 identified by similarity to SP:P23282; match to protein family HMM PF04413 YP_266887.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_266888.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_266889.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_266890.1 identified by similarity to SP:P09390; match to protein family HMM PF00581 YP_266891.1 identified by similarity to SP:P44783; match to protein family HMM PF01694 YP_266892.1 identified by match to protein family HMM PF03748 YP_266893.1 identified by similarity to SP:P26602; match to protein family HMM PF04345 YP_266894.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474 YP_266895.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_266897.1 identified by match to protein family HMM PF03480 YP_266898.1 identified by match to protein family HMM PF04290 YP_266899.1 identified by similarity to GP:28806901; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_266901.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_266902.1 identified by match to protein family HMM PF01936 YP_266903.1 identified by similarity to OMNI:SO4689 YP_266905.1 identified by match to protein family HMM PF00436 YP_266906.1 identified by similarity to GP:28805055; match to protein family HMM PF04445 YP_266907.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_266909.1 identified by similarity to OMNI:SO4640; match to protein family HMM PF00578 YP_266910.1 identified by similarity to SP:P23887; match to protein family HMM PF00210 YP_266911.1 identified by similarity to SP:P16244; match to protein family HMM PF00486 YP_266912.1 identified by similarity to OMNI:SO4018 YP_266913.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_266915.1 identified by match to protein family HMM PF00561 YP_266916.1 identified by similarity to SP:Q47130; match to protein family HMM PF00313; match to protein family HMM PF06961 YP_266917.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00560 YP_266919.1 identified by similarity to OMNI:SO3512 YP_266921.1 identified by similarity to SP:P32680 YP_266922.1 identified by match to protein family HMM PF00144 YP_266923.1 identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_266924.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_266925.1 identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_266927.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_266928.1 identified by match to protein family HMM PF02687 YP_266929.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_266930.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_266931.1 identified by similarity to SP:P25895; match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_266932.1 identified by similarity to SP:O69415; match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_266933.1 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_266934.1 identified by similarity to OMNI:SO4205 YP_266935.1 identified by similarity to SP:P27859; match to protein family HMM PF01026 YP_266936.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_266937.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_266938.1 identified by match to protein family HMM PF02798 YP_266939.1 identified by match to protein family HMM PF00440 YP_266941.1 identified by similarity to SP:P25552; match to protein family HMM PF02541 YP_266942.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_266943.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_266944.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_266945.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_266946.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin YP_266947.1 identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_266948.1 identified by similarity to SP:P15288; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_266949.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_266950.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_266951.1 The radC gene has been interrupted by a phage insertion; identified by similarity to SP:P25531 YP_266952.1 identified by match to protein family HMM PF00589 YP_266953.1 identified by match to protein family HMM PF00589 YP_266956.1 identified by similarity to GP:28809634 YP_266957.1 identified by similarity to GP:5123475 YP_266966.1 identified by similarity to SP:P09162 YP_266967.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_266973.1 identified by similarity to OMNI:SO2807 YP_266974.1 identified by match to protein family HMM PF01656 YP_266975.1 identified by similarity to OMNI:SO2809 YP_266976.1 identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_266977.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_266979.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577 YP_266980.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_266981.1 identified by match to protein family HMM PF00440 YP_266982.1 identified by similarity to OMNI:SO2439 YP_266983.1 identified by similarity to OMNI:PP0367 YP_266984.1 identified by similarity to SP:P13001; match to protein family HMM PF00561; match to protein family HMM TIGR01738 YP_266985.1 identified by similarity to SP:P31773 YP_266987.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_266989.1 identified by similarity to GP:29340958 YP_266992.1 identified by match to protein family HMM PF01522 YP_266995.1 identified by similarity to OMNI:SO4615; match to protein family HMM PF02630 YP_266996.1 converts protoheme IX and farnesyl diphosphate to heme O YP_266997.1 identified by match to protein family HMM PF02628 YP_266998.1 identified by similarity to GP:27358560 YP_266999.1 identified by similarity to OMNI:SO4611 YP_267000.1 identified by match to protein family HMM PF00510 YP_267001.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_267002.1 identified by similarity to SP:P31833; match to protein family HMM PF00115 YP_267003.1 identified by similarity to SP:P08306; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790 YP_267004.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498 YP_267005.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_267006.1 identified by similarity to GP:1710898 YP_267010.1 identified by similarity to SP:P23484; match to protein family HMM PF04542 YP_267011.1 identified by similarity to SP:P23485; match to protein family HMM PF04773 YP_267012.1 identified by similarity to SP:P09098; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_267014.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_267015.1 identified by similarity to OMNI:NTL01BMA0365; match to protein family HMM PF05962 YP_267017.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_267018.1 identified by match to protein family HMM PF01266 YP_267019.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_267020.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_267021.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_267022.1 identified by similarity to SP:P87014 YP_267024.1 identified by similarity to GP:28808561 YP_267025.1 identified by match to protein family HMM PF00578 YP_267026.1 identified by similarity to OMNI:PSPTO4246 YP_267027.1 identified by similarity to GP:27358284 YP_267028.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_267029.1 identified by similarity to OMNI:NTL01XC3548 YP_267030.1 identified by similarity to OMNI:NTL01XA0270; match to protein family HMM PF03929 YP_267031.1 identified by similarity to OMNI:NTL01XC0250 YP_267032.1 identified by similarity to OMNI:SO2846; match to protein family HMM PF01925 YP_267035.1 identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969 YP_267036.1 identified by match to protein family HMM PF00165 YP_267039.1 identified by similarity to SP:Q06475 YP_267040.1 identified by match to protein family HMM PF00037 YP_267041.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_267044.1 identified by similarity to SP:Q51698; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_267045.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_267046.1 identified by similarity to OMNI:PP2483 YP_267047.1 identified by similarity to OMNI:PP2480; match to protein family HMM PF02625 YP_267048.1 identified by similarity to SP:P43671 YP_267049.1 identified by match to protein family HMM PF00034 YP_267050.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_267051.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204 YP_267052.1 identified by match to protein family HMM PF00753 YP_267053.1 identified by similarity to OMNI:SO0013 YP_267054.1 identified by match to protein family HMM PF00873 YP_267055.1 identified by match to protein family HMM TIGR01730 YP_267056.1 identified by match to protein family HMM PF00440 YP_267057.1 identified by match to protein family HMM PF00583 YP_267058.1 identified by similarity to OMNI:VCA0042 YP_267059.1 identified by similarity to GP:28806154 YP_267060.1 identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_267061.1 identified by similarity to OMNI:NTL02YP0443; match to protein family HMM PF06843 YP_267062.1 identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982 YP_267066.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01074 YP_267067.1 identified by similarity to OMNI:VC0163; match to protein family HMM PF04380 YP_267068.1 identified by similarity to SP:P26341; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_267071.1 identified by similarity to OMNI:DR1053 YP_267074.1 identified by similarity to SP:P27829; match to protein family HMM PF00984; match to protein family HMM PF02350; match to protein family HMM PF03721; match to protein family HMM TIGR00236 YP_267075.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_267076.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_267079.1 identified by similarity to SP:P82903; match to protein family HMM PF00034 YP_267081.1 identified by similarity to OMNI:NTL01SM00856; match to protein family HMM PF04463 YP_267083.1 identified by similarity to OMNI:SO2792; match to protein family HMM PF06945 YP_267085.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_267086.1 identified by similarity to GP:28809528; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_267087.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_267088.1 identified by similarity to SP:P26365; match to protein family HMM PF01476; match to protein family HMM PF01520 YP_267089.1 identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 YP_267090.1 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174 YP_267091.1 identified by similarity to SP:P25521; match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_267092.1 identified by similarity to SP:P25519 YP_267093.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_267094.1 identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_267095.1 identified by similarity to OMNI:SO0321 YP_267096.1 identified by similarity to SP:P12283; match to protein family HMM PF00709; match to protein family HMM TIGR00184 YP_267097.1 identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949 YP_267098.1 identified by similarity to OMNI:SO0720 YP_267099.1 identified by similarity to OMNI:CC0476 YP_267100.1 catalyzes the conversion of NADPH to NADH YP_267101.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_267102.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_267104.1 identified by match to protein family HMM PF00076 YP_267111.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_267112.1 identified by match to protein family HMM PF00589 YP_267119.1 identified by similarity to SP:P38442; match to protein family HMM PF05707 YP_267125.1 identified by match to protein family HMM PF02486 YP_267128.1 identified by match to protein family HMM PF00717 YP_267135.1 identified by similarity to SP:Q45968; match to protein family HMM PF02371 YP_267138.1 identified by match to protein family HMM PF00583 YP_267142.1 identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_267144.1 identified by similarity to GP:27355226 YP_267145.1 identified by similarity to GP:16209569; match to protein family HMM PF00171 YP_267146.1 identified by match to protein family HMM PF00324 YP_267147.1 identified by similarity to OMNI:NTL03PA04807; match to protein family HMM PF00196 YP_267148.1 identified by similarity to OMNI:NTL02SC5439 YP_267149.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_267150.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_267151.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_267152.1 identified by similarity to OMNI:NTL01BS1343; match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267153.1 identified by similarity to OMNI:SO3722 YP_267155.1 identified by similarity to SP:P41789; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818 YP_267156.1 identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267157.1 identified by similarity to GP:6174690 YP_267158.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme YP_267162.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_267163.1 identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_267165.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_267166.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_267167.1 identified by match to protein family HMM PF04509 YP_267169.1 identified by similarity to GP:5524752 YP_267170.1 identified by similarity to SP:P32692 YP_267171.1 identified by similarity to GP:29340934 YP_267172.1 identified by similarity to OMNI:SO0942 YP_267173.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_267174.1 binds single-stranded DNA at the primosome assembly site YP_267175.1 identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_267176.1 identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_267178.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267179.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267180.1 identified by similarity to GP:27362381 YP_267181.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_267182.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_267183.1 identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 YP_267186.1 identified by similarity to OMNI:SO0620 YP_267187.1 identified by similarity to OMNI:NTL01YP0167; match to protein family HMM PF06794 YP_267190.1 identified by similarity to GP:26111560 YP_267191.1 identified by match to protein family HMM PF00005 YP_267192.1 identified by similarity to OMNI:NTL01YP0178; match to protein family HMM TIGR02443 YP_267193.1 identified by similarity to SP:P30857; match to protein family HMM PF04102 YP_267194.1 identified by similarity to GP:2160521; match to protein family HMM PF00400 YP_267195.1 identified by similarity to SP:P45523; match to protein family HMM PF00254; match to protein family HMM PF01346 YP_267198.1 identified by similarity to GP:28809765; match to protein family HMM PF03061 YP_267200.1 identified by similarity to GP:4704563 YP_267202.1 identified by similarity to SP:P80735 YP_267204.1 identified by similarity to OMNI:SO4561 YP_267206.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_267207.1 identified by match to protein family HMM PF00392 YP_267208.1 identified by match to protein family HMM PF00005 YP_267209.1 identified by similarity to GP:29541373 YP_267210.1 identified by similarity to OMNI:VCA0939; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_267212.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_267213.1 identified by similarity to SP:P00935; match to protein family HMM PF01053; match to protein family HMM TIGR02080 YP_267214.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_267216.1 identified by similarity to OMNI:PSPTO2580 YP_267217.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_267218.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_267219.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_267220.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_267221.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_267222.1 catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA YP_267223.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_267224.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_267225.1 identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175 YP_267226.1 identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137 YP_267227.1 identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350 YP_267228.1 identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351 YP_267229.1 identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_267230.1 identified by similarity to SP:P24167; match to protein family HMM PF01202 YP_267231.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_267232.1 identified by similarity to GP:27360923 YP_267233.1 identified by similarity to SP:P00475; match to protein family HMM PF02086; match to protein family HMM TIGR00571 YP_267234.1 identified by similarity to OMNI:PP2374 YP_267235.1 identified by similarity to OMNI:SO0291 YP_267236.1 identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001 YP_267237.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_267238.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_267239.1 identified by similarity to OMNI:NTL01BL0696; match to protein family HMM PF00498 YP_267240.1 identified by similarity to SP:Q92743; match to protein family HMM PF00089 YP_267241.1 identified by similarity to SP:P14489; match to protein family HMM PF00905 YP_267242.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267243.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267247.1 identified by similarity to GP:29609247; match to protein family HMM PF04237 YP_267248.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_267251.1 identified by similarity to GP:28809629 YP_267256.1 identified by similarity to OMNI:NTL01SF0469; match to protein family HMM PF04237 YP_267259.1 identified by similarity to PIR:S37734; match to protein family HMM PF01555 YP_267260.1 identified by similarity to OMNI:NTL01RC0850 YP_267263.1 identified by similarity to GP:29896478 YP_267264.1 identified by similarity to SP:P33910; match to protein family HMM PF00128 YP_267265.1 identified by similarity to OMNI:NTL01HS00220 YP_267266.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate YP_267267.1 identified by similarity to OMNI:CC2910 YP_267270.1 identified by similarity to OMNI:NTL01MM2874 YP_267271.1 identified by similarity to OMNI:CT2083 YP_267272.1 identified by similarity to GP:28809962; match to protein family HMM TIGR02450 YP_267275.1 identified by similarity to OMNI:SO0771; match to protein family HMM PF04134 YP_267276.1 identified by similarity to OMNI:EF0357 YP_267278.1 identified by similarity to GP:27352037 YP_267279.1 identified by similarity to OMNI:CC2910 YP_267281.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_267284.1 identified by match to protein family HMM PF01565 YP_267286.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_267289.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267290.1 identified by match to protein family HMM PF00903 YP_267293.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_267294.1 identified by match to protein family HMM PF00849 YP_267295.1 identified by match to protein family HMM TIGR01470 YP_267296.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_267298.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_267299.1 identified by similarity to OMNI:SO1480; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267302.1 identified by similarity to GP:29898619 YP_267304.1 identified by similarity to SP:P38097; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267306.1 identified by match to protein family HMM PF00583 YP_267308.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_267309.1 identified by similarity to SP:P11028; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_267310.1 involved in de novo purine biosynthesis YP_267312.1 identified by similarity to OMNI:NTL01NSA0344 YP_267313.1 identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877 YP_267321.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_267322.1 identified by match to protein family HMM TIGR01730 YP_267323.1 identified by match to protein family HMM PF00005 YP_267324.1 identified by match to protein family HMM PF02687 YP_267325.1 identified by match to protein family HMM PF02687 YP_267326.1 identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_267327.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267328.1 identified by similarity to SP:Q46629; match to protein family HMM PF02563 YP_267329.1 identified by similarity to SP:P75880; match to protein family HMM PF01451 YP_267330.1 identified by similarity to SP:P38134; match to protein family HMM PF02706 YP_267332.1 identified by similarity to SP:P37746; match to protein family HMM PF01943 YP_267336.1 identified by similarity to GP:3413449; match to protein family HMM PF00534 YP_267338.1 identified by match to protein family HMM PF00534 YP_267339.1 identified by similarity to SP:Q56623; match to protein family HMM PF07993 YP_267340.1 identified by similarity to GP:1929427; match to protein family HMM PF02397 YP_267341.1 identified by similarity to SP:P76373; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_267342.1 identified by similarity to GP:3093975; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_267343.1 identified by similarity to SP:P25520; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_267344.1 identified by match to protein family HMM PF02719; match to protein family HMM PF07993 YP_267345.1 identified by similarity to OMNI:SO2622 YP_267346.1 identified by similarity to OMNI:SO1060 YP_267347.1 identified by similarity to OMNI:VC1895 YP_267348.1 identified by match to protein family HMM PF04141; match to protein family HMM PF07719 YP_267349.1 identified by similarity to SP:P22365; match to protein family HMM PF00127 YP_267350.1 identified by similarity to SP:Q52527; match to protein family HMM PF00034 YP_267351.1 identified by similarity to SP:P98008; match to protein family HMM PF00115 YP_267353.1 identified by match to protein family HMM PF00450 YP_267355.1 identified by similarity to OMNI:SO4465; match to protein family HMM PF03781 YP_267356.1 identified by similarity to SP:P32132; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_267358.1 identified by similarity to OMNI:SO4402 YP_267359.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_267360.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_267361.1 identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067 YP_267362.1 identified by similarity to SP:P02425; match to protein family HMM PF00467; match to protein family HMM TIGR01079 YP_267363.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_267364.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_267365.1 identified by similarity to SP:P02361; match to protein family HMM PF00410 YP_267366.1 identified by similarity to SP:P02390; match to protein family HMM PF00347 YP_267367.1 identified by similarity to SP:P02419; match to protein family HMM PF00861; match to protein family HMM TIGR00060 YP_267368.1 identified by similarity to SP:P02356; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 YP_267369.1 identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308 YP_267370.1 identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071 YP_267371.1 identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967 YP_267372.1 identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022 YP_267373.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_267374.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_267375.1 identified by similarity to SP:P02354; match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 YP_267376.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_267377.1 is a component of the macrolide binding site in the peptidyl transferase center YP_267378.1 identified by similarity to SP:P37307; match to protein family HMM PF00485 YP_267379.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267380.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_267381.1 identified by similarity to OMNI:NTL01ST3363; match to protein family HMM PF02566 YP_267382.1 identified by similarity to OMNI:SO2891 YP_267383.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_267384.1 identified by similarity to SP:P76217; match to protein family HMM PF00171 YP_267385.1 identified by similarity to SP:P76218; match to protein family HMM PF04958 YP_267386.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_267387.1 identified by similarity to OMNI:SO0615 YP_267388.1 identified by similarity to PIR:A01122; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_267389.1 identified by similarity to OMNI:CC0608 YP_267391.1 identified by similarity to SP:P05826; match to protein family HMM PF00543 YP_267392.1 identified by match to protein family HMM PF00909 YP_267393.1 identified by similarity to SP:P20752; match to protein family HMM PF00160 YP_267394.1 identified by similarity to GP:28807037 YP_267395.1 identified by similarity to OMNI:NTL01AA00564 YP_267397.1 identified by match to protein family HMM PF04023 YP_267398.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_267399.1 identified by similarity to SP:O34529; match to protein family HMM PF00365 YP_267400.1 identified by similarity to SP:P35164; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_267401.1 identified by similarity to SP:P13792; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_267402.1 identified by similarity to GP:28809920 YP_267403.1 identified by similarity to GP:28809921 YP_267405.1 identified by similarity to OMNI:SO0364 YP_267406.1 identified by match to protein family HMM PF00378 YP_267407.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_267408.1 identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_267409.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_267410.1 identified by similarity to SP:P25549; match to protein family HMM PF00884 YP_267411.1 identified by match to protein family HMM PF00501 YP_267412.1 identified by match to protein family HMM PF00165 YP_267413.1 identified by similarity to GP:29608559 YP_267414.1 identified by similarity to OMNI:NTL02LI3606; match to protein family HMM PF01575 YP_267415.1 identified by similarity to SP:P51831; match to protein family HMM PF00106 YP_267416.1 identified by similarity to SP:P45857; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_267417.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267418.1 identified by match to protein family HMM PF02515 YP_267419.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803 YP_267420.1 identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199 YP_267421.1 identified by similarity to OMNI:NTL01RS2043 YP_267423.1 identified by match to protein family HMM PF00378 YP_267424.1 identified by similarity to OMNI:SO1500; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_267425.1 identified by similarity to OMNI:SO0355; match to protein family HMM PF00501 YP_267427.1 identified by match to protein family HMM PF00583 YP_267428.1 identified by similarity to OMNI:SO2050; match to protein family HMM PF06080 YP_267429.1 identified by similarity to OMNI:PSPTO4092; match to protein family HMM PF04339 YP_267430.1 identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267431.1 identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_267434.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267435.1 identified by similarity to GP:27361783 YP_267436.1 identified by similarity to GP:24251273; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267437.1 identified by similarity to OMNI:CC1353 YP_267438.1 identified by similarity to SP:P23234; match to protein family HMM PF02776 YP_267439.1 identified by similarity to OMNI:NTL01NS4790 YP_267442.1 identified by similarity to OMNI:SO1075 YP_267443.1 identified by similarity to GP:29339792 YP_267447.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_267448.1 identified by similarity to SP:P10384; match to protein family HMM PF03349 YP_267449.1 identified by similarity to OMNI:NTL01AA00635; match to protein family HMM PF03794 YP_267450.1 identified by similarity to OMNI:NT01MC0272 YP_267451.1 identified by similarity to SP:O67062 YP_267452.1 identified by match to protein family HMM PF01557 YP_267453.1 identified by similarity to SP:Q9KUB7 YP_267454.1 identified by similarity to OMNI:NTL03PA00357 YP_267456.1 identified by similarity to SP:P36670; match to protein family HMM PF07690 YP_267458.1 identified by similarity to OMNI:SO3813 YP_267459.1 identified by similarity to SP:P20752; match to protein family HMM PF00160 YP_267460.1 identified by similarity to OMNI:SO3811 YP_267461.1 identified by similarity to SP:P42596; match to protein family HMM PF05175 YP_267462.1 identified by similarity to SP:P15298; match to protein family HMM PF01722 YP_267463.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_267465.1 identified by similarity to SP:P00903 YP_267467.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_267468.1 identified by similarity to SP:P36997; match to protein family HMM PF00313 YP_267469.1 identified by similarity to SP:P35157; similarity to SP:P35158; match to protein family HMM PF07670 YP_267470.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_267471.1 identified by match to protein family HMM PF00036 YP_267472.1 identified by match to protein family HMM PF00561 YP_267473.1 identified by similarity to SP:P46903; match to protein family HMM PF00005 YP_267474.1 identified by similarity to SP:P46904 YP_267475.1 identified by similarity to SP:Q06198; match to protein family HMM PF04542 YP_267478.1 identified by similarity to SP:P00477; match to protein family HMM PF00464 YP_267479.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_267480.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_267481.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_267482.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_267483.1 identified by similarity to OMNI:SO0835 YP_267487.1 identified by similarity to SP:P36996; match to protein family HMM PF00313 YP_267488.1 identified by similarity to SP:P07118; match to protein family HMM PF00133; match to protein family HMM TIGR00422 YP_267489.1 identified by similarity to SP:P28905; match to protein family HMM PF04364 YP_267490.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_267491.1 identified by similarity to SP:P39340; match to protein family HMM PF03739 YP_267493.1 identified by similarity to SP:P39341; match to protein family HMM PF03739 YP_267494.1 identified by similarity to OMNI:SO1371; match to protein family HMM PF06271 YP_267495.1 identified by match to protein family HMM PF00873 YP_267496.1 identified by match to protein family HMM TIGR01730 YP_267497.1 identified by similarity to PIR:E83180; match to protein family HMM PF00440 YP_267498.1 identified by similarity to SP:P39159; match to protein family HMM PF00639 YP_267500.1 identified by similarity to GP:2921857; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04151 YP_267502.1 identified by similarity to GP:2921857; match to protein family HMM PF00082; match to protein family HMM PF02225 YP_267503.1 identified by similarity to GP:13540819; match to protein family HMM PF00082 YP_267504.1 identified by similarity to OMNI:NTL03CP1512; match to protein family HMM PF00990; match to protein family HMM PF07494; match to protein family HMM PF07495 YP_267505.1 identified by similarity to GP:29341441; match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_267509.1 identified by similarity to OMNI:NTL02ML2480; match to protein family HMM PF03458 YP_267510.1 identified by similarity to SP:P55037; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898 YP_267511.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_267512.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_267516.1 identified by match to protein family HMM PF03547 YP_267517.1 identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_267518.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_267519.1 identified by similarity to OMNI:VC1049; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267520.1 identified by match to protein family HMM PF00857 YP_267523.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_267524.1 identified by match to protein family HMM PF00005 YP_267525.1 identified by match to protein family HMM PF02687 YP_267527.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_267528.1 identified by similarity to GP:29338160; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267529.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_267530.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_267533.1 identified by match to protein family HMM PF00588 YP_267535.1 identified by match to protein family HMM PF02163 YP_267536.1 identified by similarity to SP:Q56897 YP_267537.1 identified by similarity to GP:1683629; match to protein family HMM PF00082 YP_267543.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545 YP_267544.1 identified by similarity to OMNI:NTL01BH3501 YP_267545.1 identified by similarity to GP:27359991 YP_267546.1 identified by similarity to GP:1045438; match to protein family HMM PF01553 YP_267547.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267549.1 identified by similarity to OMNI:CC0158 YP_267550.1 identified by similarity to GB:BAB50398.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267551.1 identified by match to protein family HMM PF01965 YP_267552.1 identified by match to protein family HMM PF00903 YP_267553.1 identified by match to protein family HMM PF01047 YP_267554.1 identified by similarity to SP:Q9VG96; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_267557.1 identified by similarity to OMNI:PP4634 YP_267558.1 identified by similarity to GP:28808043; match to protein family HMM PF07681 YP_267559.1 identified by similarity to OMNI:CC3256 YP_267560.1 identified by similarity to GP:28808041 YP_267562.1 identified by match to protein family HMM PF00085 YP_267563.1 identified by similarity to OMNI:VCA0647 YP_267564.1 identified by similarity to SP:P77379; match to protein family HMM PF00165 YP_267565.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267566.1 identified by similarity to SP:P25437; match to protein family HMM PF00107 YP_267568.1 identified by match to protein family HMM PF00756 YP_267569.1 identified by similarity to SP:P77302; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267570.1 identified by similarity to GP:18077135 YP_267572.1 identified by similarity to GB:AAP10345.1; match to protein family HMM PF01638 YP_267573.1 identified by match to protein family HMM PF00106 YP_267575.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_267576.1 identified by similarity to SP:P39811 YP_267577.1 identified by match to protein family HMM PF00561 YP_267578.1 identified by match to protein family HMM PF00462 YP_267580.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267581.1 identified by similarity to OMNI:VC1867 YP_267582.1 identified by similarity to GP:27352653 YP_267583.1 identified by match to protein family HMM PF00326 YP_267587.1 identified by similarity to SP:P55690; match to protein family HMM PF00266 YP_267588.1 identified by match to protein family HMM PF01758 YP_267589.1 identified by similarity to SP:P36547; match to protein family HMM PF00165 YP_267590.1 identified by similarity to SP:P51691; match to protein family HMM PF00884 YP_267591.1 identified by match to protein family HMM PF02368 YP_267595.1 identified by similarity to GP:28808041; match to protein family HMM PF05114 YP_267596.1 identified by similarity to OMNI:CC3256 YP_267597.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_267598.1 identified by match to protein family HMM PF05940 YP_267600.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_267602.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267603.1 identified by similarity to GP:25992569; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_267606.1 identified by similarity to SP:P27507; match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_267607.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone YP_267608.1 Required in the synthesis of PPQ, but its exact function is unknown YP_267610.1 possibly involved in transport of pyrroloquinoline quinone transport YP_267611.1 identified by match to protein family HMM PF08042; match to protein family HMM TIGR02107 YP_267612.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_267613.1 identified by similarity to SP:P02373; match to protein family HMM PF00366 YP_267614.1 identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012 YP_267615.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_267616.1 identified by similarity to SP:P02352; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009 YP_267617.1 identified by similarity to SP:P02423; match to protein family HMM PF00237; match to protein family HMM TIGR01044 YP_267618.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_267619.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_267620.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_267621.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_267622.1 identified by similarity to SP:P02386; match to protein family HMM PF00297 YP_267623.1 identified by similarity to SP:P02364; match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_267624.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_267630.1 identified by match to protein family HMM PF05707 YP_267636.1 identified by match to protein family HMM PF02486 YP_267643.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_267644.1 identified by match to protein family HMM PF01527 YP_267649.1 identified by match to protein family HMM PF00589 YP_267651.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02447 YP_267652.1 identified by similarity to OMNI:SO3336 YP_267653.1 identified by similarity to OMNI:SO2861 YP_267655.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207 YP_267657.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_267658.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_267659.1 identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_267660.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_267661.1 identified by similarity to GP:27358553 YP_267662.1 identified by similarity to OMNI:PSPTO4208; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267664.1 identified by match to protein family HMM PF03009 YP_267665.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_267666.1 identified by similarity to SP:P77495; match to protein family HMM PF00501 YP_267667.1 identified by match to protein family HMM PF01381 YP_267669.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_267671.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_267672.1 identified by similarity to OMNI:NTL03PA00039; match to protein family HMM PF07311 YP_267673.1 identified by similarity to OMNI:NTL03PA01027 YP_267674.1 identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_267675.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_267676.1 identified by similarity to OMNI:SO0306 YP_267677.1 identified by similarity to GP:2353713 YP_267678.1 identified by similarity to OMNI:NTL01MM2393; match to protein family HMM PF03061 YP_267679.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_267680.1 identified by match to protein family HMM PF00107 YP_267682.1 identified by similarity to OMNI:PSPTO3545; match to protein family HMM PF01965 YP_267683.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267684.1 identified by similarity to SP:P52090; match to protein family HMM TIGR01840 YP_267685.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267686.1 identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_267687.1 identified by similarity to GP:27361756 YP_267688.1 identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267689.1 identified by match to protein family HMM PF07690 YP_267690.1 identified by similarity to GP:2853612; match to protein family HMM PF07859 YP_267691.1 identified by similarity to OMNI:NTL03PA01036 YP_267692.1 identified by similarity to SP:O86034; match to protein family HMM PF00106 YP_267694.1 identified by similarity to OMNI:NMB1825 YP_267695.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_267696.1 identified by similarity to SP:P02905; match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_267697.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_267699.1 identified by similarity to GP:27361086 YP_267701.1 identified by similarity to GP:6759486; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267702.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_267703.1 identified by similarity to SP:P36654; match to protein family HMM PF03091 YP_267704.1 identified by similarity to SP:P37147; match to protein family HMM PF04186 YP_267705.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_267706.1 identified by similarity to SP:P06139; match to protein family HMM PF00118; match to protein family HMM TIGR02348 YP_267707.1 identified by match to protein family HMM PF00691 YP_267710.1 identified by similarity to OMNI:NTL03PA01776; match to protein family HMM PF05552 YP_267711.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression YP_267714.1 identified by match to protein family HMM PF00691 YP_267716.1 identified by similarity to OMNI:SO1717 YP_267717.1 identified by similarity to OMNI:SO0554 YP_267718.1 identified by match to protein family HMM PF00924 YP_267719.1 identified by similarity to OMNI:SO0556 YP_267720.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_267721.1 identified by similarity to SP:P33398; match to protein family HMM PF01132; match to protein family HMM TIGR00038 YP_267723.1 identified by match to protein family HMM PF00532 YP_267724.1 identified by similarity to OMNI:NTL01NM01971; match to protein family HMM PF07690 YP_267725.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_267726.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267727.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_267728.1 identified by similarity to SP:P71447; match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009 YP_267729.1 identified by match to protein family HMM PF03632; match to protein family HMM PF03633 YP_267730.1 identified by match to protein family HMM PF07690 YP_267731.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_267732.1 identified by match to protein family HMM PF01055 YP_267733.1 identified by match to protein family HMM PF00128 YP_267734.1 identified by similarity to SP:Q05884; match to protein family HMM PF00128 YP_267735.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_267736.1 identified by match to protein family HMM PF00440 YP_267737.1 identified by similarity to GP:6740923; match to protein family HMM PF00171 YP_267738.1 identified by similarity to OMNI:NTL04PA2461 YP_267739.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267740.1 identified by match to protein family HMM PF00107 YP_267741.1 identified by similarity to GP:1710898; match to protein family HMM PF04820 YP_267742.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_267744.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267745.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02103 YP_267746.1 identified by match to protein family HMM PF01553 YP_267747.1 identified by match to protein family HMM PF00498 YP_267748.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_267753.1 identified by similarity to SP:P36879; match to protein family HMM PF00005 YP_267754.1 identified by similarity to SP:P36880; match to protein family HMM PF01061 YP_267756.1 identified by match to protein family HMM PF00282 YP_267757.1 identified by similarity to SP:O35000; match to protein family HMM PF01182; match to protein family HMM TIGR00502 YP_267758.1 identified by similarity to OMNI:SO3337; match to protein family HMM PF01590 YP_267759.1 identified by similarity to OMNI:SO3587 YP_267760.1 identified by match to protein family HMM PF01925 YP_267761.1 identified by match to protein family HMM PF01547 YP_267762.1 identified by match to protein family HMM PF00528 YP_267763.1 identified by match to protein family HMM PF00005 YP_267764.1 identified by similarity to OMNI:NTL01XA3918; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_267765.1 identified by similarity to SP:P26647; match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_267766.1 identified by similarity to SP:Q08019 YP_267768.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_267769.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_267770.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_267771.1 identified by similarity to GP:1710898 YP_267772.1 identified by similarity to GP:1710898; match to protein family HMM PF04820 YP_267773.1 identified by similarity to OMNI:SO3512 YP_267774.1 identified by similarity to SP:Q04786; match to protein family HMM PF00728; match to protein family HMM PF02838; match to protein family HMM PF03173; match to protein family HMM PF03174 YP_267775.1 identified by match to protein family HMM PF01869 YP_267776.1 identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_267777.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272 YP_267779.1 identified by similarity to SP:P33928; match to protein family HMM PF03100 YP_267780.1 identified by similarity to SP:P36770; match to protein family HMM PF04995 YP_267781.1 identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_267782.1 identified by similarity to SP:P33930; match to protein family HMM PF03379; match to protein family HMM TIGR01190 YP_267783.1 ATP-binding protein; required for proper cytochrome c maturation YP_267784.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353 YP_267785.1 identified by similarity to SP:P33926; match to protein family HMM TIGR00385 YP_267786.1 identified by similarity to SP:P33925; match to protein family HMM PF03918 YP_267787.1 identified by similarity to GB:AAC44229.1; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_267788.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_267789.1 identified by similarity to SP:Q47155; match to protein family HMM PF00817 YP_267790.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_267791.1 identified by similarity to SP:P31803; match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_267792.1 identified by match to protein family HMM PF04277; match to protein family HMM TIGR01195 YP_267793.1 catalyzes the formation of pyruvate from oxaloacetate YP_267794.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109 YP_267796.1 identified by match to protein family HMM PF01435 YP_267797.1 identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558 YP_267799.1 identified by similarity to SP:Q56352; match to protein family HMM PF03264; match to protein family HMM TIGR02161 YP_267800.1 identified by similarity to SP:P39186; match to protein family HMM PF03892 YP_267801.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_267802.1 identified by similarity to SP:P33938 YP_267803.1 identified by similarity to SP:P33939; match to protein family HMM PF00037; match to protein family HMM TIGR00402 YP_267804.1 identified by similarity to SP:Q56348; match to protein family HMM PF06796 YP_267805.1 identified by similarity to GP:27359124; match to protein family HMM PF05127 YP_267810.1 identified by match to protein family HMM PF00005 YP_267811.1 identified by match to protein family HMM PF01061 YP_267812.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_267815.1 identified by match to protein family HMM PF04977 YP_267816.1 identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453 YP_267817.1 identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151 YP_267818.1 identified by similarity to OMNI:SO3436; match to protein family HMM PF01142; match to protein family HMM TIGR00094 YP_267819.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_267820.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_267821.1 identified by similarity to SP:P36684; match to protein family HMM PF00597 YP_267822.1 identified by similarity to SP:P33648; match to protein family HMM PF01476; match to protein family HMM PF01551 YP_267823.1 identified by similarity to SP:P13445; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02394 YP_267824.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_267825.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_267826.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_267827.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_267828.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_267829.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_267830.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_267831.1 identified by similarity to OMNI:VC2288; match to protein family HMM PF04400 YP_267832.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_267833.1 identified by similarity to SP:P22939; match to protein family HMM PF00348 YP_267834.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_267836.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_267837.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella YP_267838.1 Required for the synthesis of the thiazole moiety YP_267839.1 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745 YP_267840.1 identified by similarity to OMNI:SO3816 YP_267842.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_267843.1 identified by similarity to OMNI:PSPTO2644 YP_267844.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_267845.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_267847.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_267848.1 identified by similarity to GP:1753197; match to protein family HMM PF00326; match to protein family HMM PF00930 YP_267849.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_267850.1 identified by similarity to OMNI:SO1225 YP_267851.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_267853.1 identified by match to protein family HMM PF01026 YP_267854.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_267855.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_267858.1 identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_267861.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_267862.1 identified by similarity to SP:P21516; match to protein family HMM PF02547; match to protein family HMM TIGR00113 YP_267863.1 identified by similarity to SP:Q54177; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_267864.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_267865.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_267866.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_267868.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_267869.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_267871.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_267872.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_267873.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_267874.1 identified by similarity to GP:23345066; match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 YP_267875.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR02006 YP_267876.1 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_267877.1 identified by similarity to GP:23345069; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_267878.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_267879.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_267880.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_267881.1 identified by similarity to OMNI:SO0427; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_267882.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_267885.1 identified by similarity to SP:P21633 YP_267886.1 identified by match to protein family HMM PF03186 YP_267887.1 identified by match to protein family HMM PF00300 YP_267889.1 identified by similarity to OMNI:NTL01XC3017 YP_267890.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379 YP_267891.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_267893.1 identified by match to protein family HMM PF01810 YP_267894.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_267895.1 identified by similarity to GP:28806984 YP_267896.1 identified by similarity to OMNI:SO1333; match to protein family HMM PF01925 YP_267897.1 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_267898.1 identified by match to protein family HMM PF01136 YP_267899.1 identified by similarity to OMNI:PP2023 YP_267900.1 identified by match to protein family HMM PF00293 YP_267902.1 identified by match to protein family HMM PF01381 YP_267905.1 identified by similarity to SP:P06129; match to protein family HMM PF00593; match to protein family HMM PF07715 YP_267906.1 identified by match to protein family HMM PF01497 YP_267907.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_267908.1 identified by match to protein family HMM PF01032 YP_267909.1 identified by match to protein family HMM PF00005 YP_267910.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_267911.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_267912.1 identified by similarity to SP:P13655; match to protein family HMM PF04324 YP_267913.1 identified by similarity to GP:2804580; match to protein family HMM PF01431; match to protein family HMM PF05649 YP_267914.1 identified by match to protein family HMM PF06738 YP_267915.1 identified by similarity to SP:Q9HYH5; match to protein family HMM PF00596 YP_267916.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_267917.1 identified by similarity to OMNI:NTL01SMB00680 YP_267918.1 identified by match to protein family HMM PF00106 YP_267919.1 identified by similarity to OMNI:SO2839 YP_267920.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_267922.1 identified by similarity to SP:P02378; match to protein family HMM PF01649; match to protein family HMM TIGR00029 YP_267923.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_267924.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_267925.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_267926.1 identified by similarity to SP:P00804; match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_267927.1 identified by similarity to SP:P22563; match to protein family HMM PF00254 YP_267928.1 identified by match to protein family HMM PF00814 YP_267930.1 identified by similarity to GP:21666982; match to protein family HMM PF00561 YP_267932.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_267934.1 identified by match to protein family HMM PF00106 YP_267935.1 identified by similarity to OMNI:SO2934 YP_267936.1 SohB; periplasmic protein; member of the peptidase S49 family YP_267937.1 identified by similarity to SP:P21345; match to protein family HMM PF00375 YP_267939.1 identified by similarity to SP:P37819; match to protein family HMM PF00491 YP_267940.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_267941.1 identified by similarity to OMNI:SO0792 YP_267942.1 identified by similarity to OMNI:SO2650 YP_267943.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_267944.1 identified by match to protein family HMM PF00037 YP_267945.1 identified by similarity to SP:P76403; match to protein family HMM PF01136 YP_267946.1 identified by similarity to OMNI:NTL03PA00759 YP_267947.1 Required for efficient pilin antigenic variation YP_267948.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_267949.1 identified by match to protein family HMM PF00267 YP_267951.1 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_267952.1 identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_267953.1 identified by similarity to GP:29338631; match to protein family HMM TIGR02136 YP_267954.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_267956.1 identified by similarity to OMNI:SO3528; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532 YP_267957.1 identified by similarity to OMNI:SO3527; match to protein family HMM TIGR02532 YP_267958.1 identified by similarity to OMNI:SO3526 YP_267960.1 identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_267962.1 identified by similarity to OMNI:SO3520 YP_267964.1 identified by similarity to SP:Q02286; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01797 YP_267965.1 identified by similarity to OMNI:SO3708 YP_267966.1 identified by similarity to SP:P15558; match to protein family HMM PF01804 YP_267971.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_267972.1 identified by match to protein family HMM PF04172 YP_267973.1 identified by match to protein family HMM PF03788 YP_267974.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267975.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_267976.1 identified by similarity to OMNI:SO0934 YP_267977.1 identified by match to protein family HMM TIGR01730 YP_267978.1 identified by match to protein family HMM PF00873 YP_267979.1 identified by match to protein family HMM PF01022 YP_267980.1 identified by similarity to OMNI:VCA0643 YP_267981.1 identified by similarity to GP:21913212 YP_267982.1 identified by similarity to GP:21886598; match to protein family HMM PF01323 YP_267983.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_267986.1 identified by match to protein family HMM PF03358 YP_267987.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_267988.1 identified by similarity to GP:28806905 YP_267989.1 identified by similarity to OMNI:NTL03PA04326 YP_267990.1 identified by similarity to SP:O05156; match to protein family HMM PF01551 YP_267991.1 identified by match to protein family HMM PF01061 YP_267992.1 identified by match to protein family HMM PF00005 YP_267993.1 identified by similarity to GP:28808656 YP_267994.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_267995.1 identified by similarity to OMNI:VC0467; match to protein family HMM PF02622 YP_267996.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_267997.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_267999.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_268000.1 identified by similarity to OMNI:PP0736; match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_268001.1 identified by similarity to SP:P31126; match to protein family HMM PF07690 YP_268002.1 identified by similarity to OMNI:VCA0211; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_268003.1 identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_268004.1 identified by similarity to GP:13641465; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_268006.1 identified by similarity to OMNI:SO1411 YP_268007.1 identified by match to protein family HMM PF03480 YP_268008.1 identified by match to protein family HMM PF04290 YP_268009.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_268010.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_268011.1 identified by similarity to OMNI:NTL01YP0864; match to protein family HMM PF05164 YP_268013.1 identified by similarity to OMNI:NTL01EC02845; match to protein family HMM PF03695 YP_268014.1 identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195 YP_268015.1 identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988 YP_268016.1 identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_268017.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_268018.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_268019.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_268024.1 identified by match to protein family HMM PF00753 YP_268025.1 identified by similarity to SP:P10151; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268026.1 identified by similarity to OMNI:VC1865 YP_268027.1 identified by match to protein family HMM PF00753 YP_268028.1 identified by similarity to OMNI:NTL01XF01138; match to protein family HMM PF01965 YP_268029.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_268030.1 identified by match to protein family HMM PF00149 YP_268031.1 identified by similarity to OMNI:NTL01TT1009; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268032.1 identified by similarity to OMNI:NTL01RS0578; match to protein family HMM PF00665 YP_268033.1 identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_268034.1 identified by similarity to OMNI:NTL01SS00280; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268038.1 identified by similarity to SP:Q9XBR7; match to protein family HMM PF02678 YP_268039.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_268041.1 identified by similarity to SP:P16680; match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_268043.1 identified by similarity to OMNI:SO1502; match to protein family HMM PF02492 YP_268044.1 identified by similarity to OMNI:SO0748 YP_268045.1 identified by match to protein family HMM PF00271 YP_268047.1 identified by similarity to SP:P75804; match to protein family HMM PF07995 YP_268048.1 identified by match to protein family HMM PF00440 YP_268050.1 identified by similarity to OMNI:NTL03PA03036; match to protein family HMM PF01243 YP_268051.1 identified by match to protein family HMM PF03372 YP_268053.1 identified by similarity to GP:27359008 YP_268055.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_268056.1 identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_268059.1 identified by similarity to OMNI:SO1994; match to protein family HMM PF01471; match to protein family HMM TIGR02283 YP_268060.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268061.1 identified by similarity to GP:14270966; match to protein family HMM PF04199 YP_268062.1 identified by match to protein family HMM PF01638 YP_268064.1 identified by similarity to GP:6635357; match to protein family HMM PF00171 YP_268067.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_268068.1 identified by similarity to GB:AAO54868.1; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268069.1 identified by similarity to SP:P20370; match to protein family HMM PF02627 YP_268072.1 identified by similarity to SP:P87051; match to protein family HMM PF00160 YP_268075.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_268076.1 catalyzes the formation of betaine from betaine aldehyde YP_268077.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_268079.1 identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001 YP_268080.1 identified by similarity to GP:28806898; match to protein family HMM PF01047 YP_268081.1 identified by similarity to SP:P30949; match to protein family HMM PF00202 YP_268082.1 identified by similarity to SP:O87778; match to protein family HMM PF00226 YP_268084.1 identified by similarity to OMNI:SO1848 YP_268086.1 identified by similarity to SP:P14532; match to protein family HMM PF03150 YP_268087.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_268089.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268090.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268091.1 identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969 YP_268092.1 identified by match to protein family HMM PF00571 YP_268095.1 identified by similarity to GP:28806135 YP_268097.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_268098.1 identified by similarity to GP:13539232; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_268099.1 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_268101.1 identified by similarity to OMNI:NTL01XC0233; match to protein family HMM PF00440 YP_268102.1 catalyzes the formation of inosine from adenosine YP_268103.1 identified by match to protein family HMM PF04055 YP_268106.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_268108.1 identified by match to protein family HMM PF03466 YP_268109.1 identified by similarity to SP:P75790; match to protein family HMM PF00005 YP_268114.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_268116.1 identified by similarity to OMNI:SO3377 YP_268117.1 identified by similarity to GP:28806113 YP_268118.1 identified by similarity to GP:451132; match to protein family HMM PF02469 YP_268120.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_268121.1 identified by similarity to SP:P40685; match to protein family HMM TIGR02451 YP_268122.1 identified by similarity to OMNI:SO3386 YP_268123.1 identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_268124.1 identified by similarity to OMNI:SO3383 YP_268125.1 identified by match to protein family HMM PF00106 YP_268126.1 identified by similarity to OMNI:SO3381 YP_268127.1 identified by similarity to OMNI:SO3380; match to protein family HMM PF07103 YP_268128.1 identified by similarity to SP:P30010; match to protein family HMM PF02353 YP_268129.1 identified by similarity to OMNI:SO4645 YP_268130.1 identified by similarity to OMNI:SO4646 YP_268131.1 identified by similarity to SP:P23836; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_268132.1 identified by similarity to SP:P23837; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_268134.1 identified by match to protein family HMM PF00107 YP_268135.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268136.1 identified by similarity to OMNI:SO4649 YP_268137.1 identified by similarity to SP:P37403; match to protein family HMM PF01037 YP_268138.1 identified by match to protein family HMM PF07670 YP_268139.1 identified by match to protein family HMM PF00440 YP_268140.1 identified by match to protein family HMM PF00724 YP_268141.1 identified by similarity to OMNI:NTL02SC0586 YP_268144.1 identified by similarity to OMNI:SO1411 YP_268145.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_268146.1 identified by match to protein family HMM PF04290 YP_268147.1 identified by match to protein family HMM PF03480 YP_268148.1 identified by similarity to SP:P13799; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_268149.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_268150.1 identified by match to protein family HMM PF00582 YP_268151.1 identified by similarity to GP:24460066; match to protein family HMM PF00801; match to protein family HMM PF01447 YP_268152.1 identified by similarity to SP:P14707; match to protein family HMM PF01548; match to protein family HMM PF02371 YP_268153.1 identified by match to protein family HMM PF00440 YP_268154.1 identified by match to protein family HMM PF05494 YP_268156.1 identified by similarity to GP:27362574 YP_268157.1 identified by match to protein family HMM PF00144 YP_268158.1 identified by similarity to OMNI:SO1991 YP_268161.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_268162.1 identified by match to protein family HMM PF00924 YP_268163.1 identified by similarity to OMNI:SO3852; match to protein family HMM PF07308 YP_268167.1 identified by similarity to OMNI:SO3593 YP_268169.1 identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_268170.1 identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_268172.1 identified by match to protein family HMM PF02515 YP_268173.1 identified by match to protein family HMM PF00378 YP_268174.1 identified by match to protein family HMM PF00465 YP_268175.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_268176.1 identified by match to protein family HMM PF01614 YP_268177.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_268178.1 identified by match to protein family HMM PF01810 YP_268179.1 identified by similarity to SP:P08367; match to protein family HMM PF05981 YP_268181.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07676 YP_268182.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_268183.1 identified by similarity to GP:2804580; match to protein family HMM PF01431; match to protein family HMM PF05649 YP_268184.1 identified by similarity to OMNI:SO3857; match to protein family HMM PF01569 YP_268185.1 identified by similarity to GP:28807257 YP_268189.1 identified by similarity to SP:P29011; match to protein family HMM PF01266 YP_268191.1 identified by match to protein family HMM PF00701 YP_268192.1 identified by similarity to GP:6900003; match to protein family HMM PF05544 YP_268193.1 identified by similarity to SP:Q56694; match to protein family HMM PF00171 YP_268194.1 identified by match to protein family HMM PF07690 YP_268195.1 identified by similarity to GP:6900003; match to protein family HMM PF05544 YP_268196.1 identified by similarity to GP:1915907; match to protein family HMM PF00557 YP_268197.1 catalyzes the formation of L-proline from L-ornithine YP_268199.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268200.1 identified by similarity to SP:P43154; match to protein family HMM PF01752 YP_268201.1 identified by match to protein family HMM PF00557 YP_268204.1 identified by similarity to OMNI:NTL01NS4731; match to protein family HMM PF01243 YP_268205.1 identified by similarity to OMNI:VC1867 YP_268207.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein YP_268209.1 identified by match to protein family HMM PF00246 YP_268213.1 identified by similarity to GP:23092307; match to protein family HMM PF05130 YP_268214.1 identified by similarity to SP:P26477; match to protein family HMM PF04316 YP_268215.1 identified by match to protein family HMM PF03240 YP_268216.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_268218.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_268219.1 identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396 YP_268220.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395 YP_268221.1 identified by similarity to SP:P75936; match to protein family HMM PF03963 YP_268222.1 identified by similarity to SP:P16322; match to protein family HMM PF00460; match to protein family HMM PF06429 YP_268223.1 identified by similarity to SP:P16323; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02490 YP_268224.1 makes up the distal portion of the flagellar basal body rod YP_268225.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_268226.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_268227.1 identified by similarity to SP:P15931; match to protein family HMM PF01832; match to protein family HMM TIGR02541 YP_268228.1 identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_268229.1 identified by similarity to GP:2443634; match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_268230.1 identified by similarity to SP:P72151; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_268231.1 identified by similarity to OMNI:PSPTO0262; match to protein family HMM PF07605 YP_268232.1 identified by similarity to SP:P72151; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_268233.1 identified by match to protein family HMM PF03646 YP_268234.1 identified by similarity to SP:P24216; match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_268238.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_268240.1 identified by similarity to GP:2338727; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_268241.1 identified by similarity to OMNI:VC2136; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_268242.1 identified by similarity to GP:2352978; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_268243.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_268244.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_268245.1 One of three proteins involved in switching the direction of the flagellar rotation YP_268246.1 binds to and inhibits the function of flagella specific ATPase FliI YP_268247.1 involved in type III protein export during flagellum assembly YP_268248.1 identified by similarity to SP:P26463; match to protein family HMM TIGR02473 YP_268249.1 identified by match to protein family HMM PF02120 YP_268250.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_268251.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_268252.1 One of three proteins involved in switching the direction of the flagellar rotation YP_268253.1 identified by match to protein family HMM PF04347 YP_268254.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_268255.1 identified by similarity to SP:P33134; match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_268256.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_268257.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_268258.1 membrane protein involved in the flagellar export apparatus YP_268259.1 positive regulator of class III flagellar genes YP_268260.1 identified by similarity to GP:6952812; match to protein family HMM PF01656 YP_268261.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_268262.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072 YP_268263.1 identified by similarity to SP:Q51434; match to protein family HMM PF04344 YP_268264.1 identified by similarity to GP:3493635; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_268265.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_268266.1 identified by similarity to SP:P28611; match to protein family HMM PF01618 YP_268267.1 identified by similarity to SP:P28612; match to protein family HMM PF00691 YP_268268.2 identified by match to protein family HMM PF01656 YP_268269.1 identified by match to protein family HMM PF01584 YP_268270.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_268271.1 identified by similarity to GP:6952821 YP_268272.1 identified by match to protein family HMM PF04333 YP_268273.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_268274.1 identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_268275.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_268276.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_268277.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_268278.1 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_268279.1 identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_268280.1 identified by similarity to GP:28809279 YP_268282.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_268283.1 identified by match to protein family HMM PF03969 YP_268284.1 identified by similarity to GP:12382240 YP_268285.1 identified by match to protein family HMM PF03942 YP_268286.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_268287.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_268290.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_268291.1 identified by similarity to SP:P27249; match to protein family HMM PF01842; match to protein family HMM PF01909; match to protein family HMM PF01966; match to protein family HMM TIGR01693 YP_268292.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_268294.1 identified by similarity to GP:28808201 YP_268295.1 identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011 YP_268296.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_268297.1 Catalyzes the phosphorylation of UMP to UDP YP_268298.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_268299.1 identified by similarity to SP:Q47675; match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_268300.1 identified by similarity to SP:P06466; match to protein family HMM PF01148 YP_268301.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_268302.1 identified by similarity to SP:P37764; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_268303.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_268304.1 identified by similarity to OMNI:SO1638; match to protein family HMM PF03938 YP_268305.1 identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 YP_268306.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_268307.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_268310.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_268311.1 identified by similarity to SP:P10442; match to protein family HMM PF01351 YP_268312.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_268313.1 identified by similarity to SP:P30867; match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_268314.1 identified by similarity to SP:P52097; similarity to GP:28374025; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_268315.1 involved in the import of serine and threonine coupled with the import of sodium YP_268316.1 identified by similarity to OMNI:SO1581; match to protein family HMM PF03831 YP_268317.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer YP_268318.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_268319.1 identified by similarity to OMNI:NTL01SF0579 YP_268320.1 identified by similarity to OMNI:SO2332 YP_268321.1 identified by match to protein family HMM PF00561 YP_268322.1 negative modulator of the initiation of chromosome replication YP_268323.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_268324.1 identified by similarity to SP:P12694; match to protein family HMM PF00676 YP_268325.1 identified by similarity to SP:P09061; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_268326.1 identified by similarity to SP:P11182; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_268327.1 identified by match to protein family HMM PF01401 YP_268328.1 identified by match to protein family HMM PF00440 YP_268332.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_268333.1 identified by similarity to OMNI:SO1990 YP_268334.1 identified by similarity to OMNI:PSPTO1739; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_268335.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_268336.1 identified by similarity to OMNI:SO3155; match to protein family HMM PF01734 YP_268338.1 identified by similarity to OMNI:SO3645 YP_268339.1 identified by similarity to GP:4007785; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_268340.1 identified by similarity to GP:4007784; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_268341.1 identified by similarity to SP:P13703; match to protein family HMM PF00682 YP_268342.1 identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_268343.1 identified by match to protein family HMM PF00378 YP_268344.1 identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039 YP_268345.1 identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_268346.1 identified by match to protein family HMM PF00376 YP_268347.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_268349.1 identified by match to protein family HMM PF00378 YP_268350.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_268354.1 identified by match to protein family HMM PF00857 YP_268355.1 identified by match to protein family HMM PF00165 YP_268356.1 identified by similarity to GP:28806770; match to protein family HMM PF01381 YP_268357.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00376; match to protein family HMM TIGR01764 YP_268358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_268359.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229 YP_268360.1 identified by similarity to OMNI:SO1500; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268363.1 identified by similarity to OMNI:NTL01NS3429 YP_268372.1 identified by similarity to OMNI:NTL02SC2964 YP_268373.1 identified by similarity to SP:P04153; match to protein family HMM PF00717 YP_268374.1 identified by similarity to SP:P04152; match to protein family HMM PF00817 YP_268375.1 identified by match to protein family HMM PF00583 YP_268377.1 identified by similarity to OMNI:NTL02ML0954 YP_268378.1 identified by match to protein family HMM PF00583 YP_268379.1 identified by match to protein family HMM PF01381 YP_268389.1 identified by match to protein family HMM PF00440 YP_268391.1 identified by similarity to GP:27361834 YP_268392.1 identified by similarity to GP:28806276 YP_268393.1 identified by match to protein family HMM PF00850 YP_268394.1 identified by similarity to SP:P38942; match to protein family HMM PF00583; match to protein family HMM PF02550 YP_268395.1 identified by similarity to OMNI:SO0366 YP_268396.1 identified by similarity to SP:Q08015 YP_268398.1 identified by similarity to OMNI:NTL01CG0485 YP_268399.1 identified by similarity to GP:29896421; match to protein family HMM PF08002 YP_268400.1 identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_268401.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_268404.1 identified by match to protein family HMM PF00753 YP_268405.1 identified by match to protein family HMM PF00753 YP_268406.1 identified by similarity to SP:Q03520; match to protein family HMM PF02798 YP_268408.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268410.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268411.1 identified by similarity to OMNI:NTL02ML6200; match to protein family HMM PF07045 YP_268412.1 identified by similarity to OMNI:NTL01NSB0023 YP_268415.1 identified by match to protein family HMM PF00753 YP_268416.1 identified by similarity to OMNI:PSPTO0163 YP_268417.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_268418.1 identified by match to protein family HMM PF00106 YP_268419.1 identified by similarity to OMNI:NTL03ST1095; match to protein family HMM PF00440 YP_268422.1 identified by similarity to OMNI:NTL03CP0451; match to protein family HMM PF00903 YP_268423.1 identified by match to protein family HMM PF01527 YP_268424.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_268431.1 identified by similarity to OMNI:CC2287; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_268432.1 identified by match to protein family HMM PF02922; match to protein family HMM TIGR02103 YP_268434.1 identified by similarity to OMNI:SO1486; match to protein family HMM PF03061 YP_268435.1 identified by similarity to SP:P40777 YP_268437.1 identified by similarity to GP:28809299 YP_268438.1 identified by match to protein family HMM PF07690 YP_268439.1 identified by match to protein family HMM PF00075 YP_268440.1 identified by similarity to GP:27355226 YP_268441.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_268442.1 identified by similarity to OMNI:VC2075; match to protein family HMM PF01230 YP_268443.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01328 YP_268444.1 identified by similarity to GP:1518779; match to protein family HMM PF00158; match to protein family HMM PF01842 YP_268445.1 identified by match to protein family HMM PF00069 YP_268446.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268447.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_268448.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_268449.1 identified by similarity to OMNI:SO1163; match to protein family HMM PF04359 YP_268450.1 identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_268451.1 identified by similarity to OMNI:SO1165; match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_268452.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_268453.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_268454.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_268455.1 identified by similarity to OMNI:SO1170; match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_268456.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_268458.1 identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128 YP_268459.1 identified by similarity to SP:P10101; match to protein family HMM PF04390 YP_268460.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_268461.1 identified by similarity to OMNI:VC0957 YP_268462.1 identified by match to protein family HMM PF05362 YP_268464.1 identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_268465.1 identified by similarity to OMNI:VC1840; match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_268466.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_268467.1 identified by similarity to SP:P05829; match to protein family HMM PF02472 YP_268468.1 identified by similarity to SP:P19934; match to protein family HMM PF06519 YP_268469.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_268470.1 identified by similarity to SP:P07176; match to protein family HMM PF00691 YP_268471.1 identified by similarity to OMNI:VC1834; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_268472.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_268474.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268475.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481 YP_268476.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_268477.1 identified by match to protein family HMM PF00924 YP_268478.1 identified by similarity to OMNI:NT01MC1898 YP_268480.1 identified by similarity to SP:P08336; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_268481.1 identified by similarity to SP:P16244; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_268482.1 identified by similarity to GP:27360801 YP_268483.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_268484.1 identified by match to protein family HMM PF00860 YP_268485.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_268487.1 identified by similarity to OMNI:PP3620; match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_268488.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_268489.1 identified by similarity to OMNI:SO2281 YP_268492.1 identified by similarity to SP:P45522; match to protein family HMM PF02254 YP_268494.1 identified by match to protein family HMM PF03783 YP_268496.1 identified by similarity to OMNI:NTL02YP1488; match to protein family HMM PF07719 YP_268499.1 identified by similarity to OMNI:NTL01SS02717 YP_268500.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268501.1 identified by similarity to OMNI:PSPTO2257; match to protein family HMM PF07681 YP_268502.1 identified by similarity to SP:O00625; match to protein family HMM PF02678; match to protein family HMM PF05726 YP_268505.1 identified by match to protein family HMM PF07681 YP_268506.1 identified by similarity to OMNI:NTL01SM02370 YP_268508.1 identified by similarity to SP:P31060; match to protein family HMM PF00005 YP_268509.1 identified by similarity to SP:P77258; match to protein family HMM PF00724 YP_268510.1 identified by similarity to OMNI:SO1958 YP_268511.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268512.1 identified by match to protein family HMM PF01764 YP_268514.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_268515.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_268518.1 identified by similarity to SP:P75802; match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_268519.1 identified by similarity to GP:27358382; match to protein family HMM PF01575 YP_268520.1 identified by similarity to SP:Q58911 YP_268525.1 identified by similarity to GP:18072166 YP_268526.1 identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724 YP_268528.1 identified by match to protein family HMM PF07053 YP_268529.1 identified by similarity to GP:8051696; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07724 YP_268531.1 identified by similarity to SP:Q57334; match to protein family HMM PF01797 YP_268534.1 identified by similarity to SP:P26844; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_268535.1 identified by similarity to GP:18072166 YP_268540.1 identified by similarity to GP:4063015; match to protein family HMM PF00353 YP_268542.1 identified by match to protein family HMM PF02687 YP_268543.1 identified by match to protein family HMM PF00005 YP_268544.1 identified by similarity to OMNI:NTL03PA05424 YP_268545.1 identified by similarity to OMNI:NTL03PA05536; match to protein family HMM PF02492; match to protein family HMM PF07683 YP_268546.1 identified by similarity to OMNI:PSPTO5525 YP_268547.1 identified by similarity to GP:28805284 YP_268548.1 identified by similarity to OMNI:NTL01XA0275 YP_268549.1 identified by similarity to SP:P33356; match to protein family HMM PF00072 YP_268550.1 identified by similarity to SP:P76523; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_268551.1 identified by similarity to SP:P75920; match to protein family HMM PF01757 YP_268554.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_268556.1 identified by similarity to SP:P39453; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_268557.1 periplasmic sensory protein associated with the TorRS two-component regulatory system YP_268558.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes YP_268559.1 identified by similarity to OMNI:SO4694; match to protein family HMM TIGR02001 YP_268561.1 identified by similarity to GP:3327029; match to protein family HMM PF06796 YP_268562.1 identified by similarity to GP:3413832; match to protein family HMM PF03264 YP_268563.1 identified by similarity to SP:O87948; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164 YP_268564.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor YP_268565.1 identified by match to protein family HMM PF00089 YP_268566.1 identified by similarity to OMNI:CC2512 YP_268569.1 identified by match to protein family HMM PF02321 YP_268571.1 identified by similarity to OMNI:VC1608 YP_268572.1 identified by similarity to GP:27362183 YP_268574.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_268575.1 identified by similarity to OMNI:SO4562; match to protein family HMM PF07049 YP_268576.1 identified by match to protein family HMM PF00903 YP_268577.1 identified by similarity to OMNI:NTL01RS2317; match to protein family HMM PF06821 YP_268578.1 identified by match to protein family HMM PF00873 YP_268579.1 identified by match to protein family HMM TIGR01730 YP_268580.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_268581.1 identified by similarity to OMNI:NTL03PA00200 YP_268582.1 identified by match to protein family HMM PF02472 YP_268583.1 identified by match to protein family HMM PF01618 YP_268584.1 identified by similarity to GP:1729783; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_268585.1 identified by similarity to GP:28808295; match to protein family HMM PF03929 YP_268586.1 identified by similarity to GP:28808296 YP_268587.1 identified by similarity to OMNI:SO1190 YP_268588.1 identified by similarity to GB:AAG23395.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785 YP_268589.1 identified by match to protein family HMM PF00034 YP_268590.1 identified by match to protein family HMM PF03150 YP_268593.1 identified by similarity to GP:24250763; match to protein family HMM PF00535 YP_268594.1 identified by match to protein family HMM PF02366 YP_268595.1 identified by similarity to GP:1729783; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_268596.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_268597.1 identified by similarity to OMNI:NTL01OI1051; match to protein family HMM PF05742 YP_268598.1 identified by similarity to PIR:A43577 YP_268599.1 identified by similarity to SP:P39377; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975 YP_268600.1 identified by similarity to SP:P73832; similarity to GP:21744227; match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_268601.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_268602.1 identified by match to protein family HMM PF01225 YP_268603.1 identified by match to protein family HMM PF00216 YP_268604.1 identified by similarity to OMNI:PP4704; match to protein family HMM PF05359 YP_268605.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_268606.1 identified by similarity to SP:Q09049; match to protein family HMM PF01654 YP_268607.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_268608.1 identified by similarity to OMNI:SO3284; match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_268609.1 identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_268610.1 identified by similarity to SP:P23886; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_268611.1 identified by similarity to OMNI:NT01MC2058 YP_268612.1 identified by similarity to OMNI:NTL03PA01976; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_268613.1 identified by similarity to OMNI:NTL03PA01975 YP_268614.1 identified by similarity to SP:Q00790; match to protein family HMM PF04205 YP_268615.1 identified by match to protein family HMM PF00171 YP_268617.1 identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011 YP_268619.1 identified by similarity to OMNI:PP2676 YP_268620.1 identified by similarity to GP:3928679; match to protein family HMM PF00034 YP_268621.1 identified by similarity to GP:27354466 YP_268622.1 identified by similarity to GP:25989532; match to protein family HMM TIGR02276 YP_268623.1 identified by match to protein family HMM PF00005 YP_268624.1 identified by match to protein family HMM PF01061 YP_268625.1 identified by match to protein family HMM PF00583 YP_268626.1 identified by similarity to OMNI:NTL01RS0578; match to protein family HMM PF00665 YP_268631.1 identified by similarity to OMNI:NTL01CG0026 YP_268632.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268633.1 identified by similarity to SP:P39812; match to protein family HMM PF01645 YP_268634.1 identified by match to protein family HMM PF00753 YP_268635.1 identified by similarity to SP:Q03520; match to protein family HMM PF02798 YP_268636.1 identified by match to protein family HMM PF01292 YP_268637.1 identified by match to protein family HMM PF00126 YP_268638.1 identified by similarity to SP:P94501; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268639.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_268640.1 identified by similarity to SP:P32105; match to protein family HMM PF02798 YP_268641.1 identified by similarity to GP:28806781 YP_268645.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_268646.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_268648.1 identified by match to protein family HMM PF00510 YP_268649.1 identified by similarity to GP:11344607 YP_268650.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_268652.1 identified by match to protein family HMM PF00034 YP_268653.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_268656.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268657.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268658.1 identified by similarity to GP:27354477 YP_268659.1 identified by similarity to SP:P40401; match to protein family HMM PF00528 YP_268660.1 identified by similarity to SP:P97027; match to protein family HMM PF00005 YP_268661.1 identified by similarity to OMNI:PP2662 YP_268662.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_268663.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268664.1 identified by match to protein family HMM PF00924 YP_268667.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_268668.1 identified by similarity to OMNI:SO2540; match to protein family HMM PF00072; match to protein family HMM PF00376; match to protein family HMM TIGR01764 YP_268669.1 identified by similarity to GP:9857983; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR02481 YP_268670.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563 YP_268671.1 identified by match to protein family HMM PF01292 YP_268673.1 identified by similarity to SP:P94177; match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_268675.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF00196 YP_268677.1 identified by match to protein family HMM PF00378 YP_268678.1 identified by match to protein family HMM PF02629 YP_268679.1 identified by similarity to OMNI:PP0386; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_268680.1 identified by match to protein family HMM PF00571 YP_268681.1 identified by similarity to GP:28805799 YP_268682.1 identified by similarity to GP:28805798; match to protein family HMM PF07556 YP_268683.1 identified by similarity to GP:27359796; match to protein family HMM PF07556 YP_268684.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_268685.1 identified by match to protein family HMM PF00376 YP_268686.1 identified by match to protein family HMM PF01545 YP_268687.1 identified by similarity to SP:P13509; match to protein family HMM PF02321 YP_268689.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_268690.1 identified by similarity to SP:P00631; match to protein family HMM PF02253 YP_268691.1 identified by match to protein family HMM PF00873 YP_268692.1 identified by similarity to SP:P76397; match to protein family HMM TIGR01730 YP_268693.1 identified by similarity to GP:5020414; match to protein family HMM PF00245 YP_268694.1 identified by match to protein family HMM PF03372 YP_268695.1 identified by match to protein family HMM PF00440 YP_268698.1 identified by similarity to SP:P17315; similarity to SP:P38370 YP_268699.1 identified by similarity to SP:P19079; match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_268700.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_268701.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_268702.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_268703.1 identified by match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_268704.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_268706.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_268707.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268708.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_268709.1 catalyzes the formation of inosine from adenosine YP_268710.1 identified by match to protein family HMM PF03372 YP_268711.1 identified by similarity to OMNI:NTL01RS1150 YP_268712.1 identified by match to protein family HMM PF03171 YP_268713.1 identified by match to protein family HMM PF03746 YP_268714.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_268715.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_268716.1 with UspC and UspD is involved in resistance to UV irradiation YP_268717.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_268718.1 identified by similarity to GP:28806528 YP_268719.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847 YP_268720.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_268721.1 identified by similarity to OMNI:SO2360 YP_268722.1 identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782 YP_268723.1 identified by similarity to GP:21702710; match to protein family HMM PF05545 YP_268724.1 identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781 YP_268725.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780 YP_268726.1 identified by similarity to SP:P47200; match to protein family HMM PF00027; match to protein family HMM PF00325 YP_268727.1 identified by similarity to OMNI:SO2365 YP_268728.1 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 YP_268729.1 identified by similarity to SP:Q47677; match to protein family HMM PF00753 YP_268730.1 identified by similarity to OMNI:VC2235 YP_268731.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_268732.1 identified by similarity to GP:28806020; match to protein family HMM PF02698 YP_268733.1 identified by similarity to SP:P17447; similarity to SP:P54417; match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_268734.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_268735.1 identified by match to protein family HMM PF01047 YP_268736.1 identified by match to protein family HMM PF00255 YP_268737.1 identified by similarity to SP:P23523; match to protein family HMM PF03446 YP_268739.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_268740.1 identified by match to protein family HMM PF00267 YP_268742.1 identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_268743.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_268744.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_268745.1 identified by match to protein family HMM PF00589 YP_268747.1 identified by similarity to OMNI:NTL03EC1578; match to protein family HMM PF05930 YP_268748.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_268752.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_268753.1 identified by match to protein family HMM PF00202 YP_268755.1 identified by similarity to OMNI:NTL02ML5433 YP_268756.1 identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001 YP_268757.1 identified by similarity to SP:P33016; match to protein family HMM PF00324 YP_268758.1 identified by match to protein family HMM PF00795 YP_268759.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_268760.1 identified by similarity to OMNI:NTL02SA1888; match to protein family HMM PF02518 YP_268761.1 identified by similarity to SP:P07027; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_268762.1 identified by similarity to OMNI:NTL02ML4239 YP_268763.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00970; match to protein family HMM PF03473; match to protein family HMM PF08030 YP_268764.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_268765.1 identified by similarity to SP:P23859; match to protein family HMM PF00528 YP_268766.1 identified by similarity to SP:P23860; match to protein family HMM PF00528 YP_268767.1 identified by similarity to SP:P23858; match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_268768.1 identified by similarity to SP:O06005; match to protein family HMM PF00324 YP_268769.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001 YP_268770.1 identified by match to protein family HMM PF00583 YP_268771.1 identified by match to protein family HMM PF07690 YP_268772.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892 YP_268773.1 identified by similarity to OMNI:PP3572; match to protein family HMM PF06267 YP_268774.1 identified by match to protein family HMM PF01042 YP_268775.1 identified by match to protein family HMM PF03241 YP_268776.1 identified by similarity to OMNI:NTL03PA05394 YP_268777.1 identified by similarity to OMNI:NTL01SM00775 YP_268778.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_268779.1 identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF03949 YP_268780.1 catalyzes the formation of fumarate from aspartate YP_268781.1 identified by match to protein family HMM PF00171 YP_268782.1 identified by match to protein family HMM PF00202 YP_268783.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_268784.1 identified by similarity to GP:3724143; match to protein family HMM PF01257 YP_268785.1 identified by similarity to GP:3724144; match to protein family HMM PF01512 YP_268786.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_268787.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_268789.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_268790.1 identified by match to protein family HMM PF00589 YP_268791.1 identified by similarity to SP:P02341; match to protein family HMM PF00216 YP_268796.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_268801.1 identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969 YP_268802.1 identified by similarity to GP:28805614; match to protein family HMM PF07969 YP_268805.1 identified by similarity to OMNI:SOA0099; match to protein family HMM PF07969 YP_268806.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_268807.1 identified by match to protein family HMM PF00920 YP_268809.1 identified by similarity to GP:13516509; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_268810.1 identified by match to protein family HMM PF01070 YP_268811.1 identified by similarity to OMNI:PSPTO4539; match to protein family HMM PF00196 YP_268812.1 identified by match to protein family HMM PF00027 YP_268813.1 identified by match to protein family HMM PF00144 YP_268815.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_268817.1 identified by similarity to GP:5566006; match to protein family HMM PF02706 YP_268818.1 identified by similarity to SP:P24235; match to protein family HMM PF00953; match to protein family HMM TIGR02380 YP_268819.1 identified by match to protein family HMM PF02719; match to protein family HMM PF07993 YP_268820.1 identified by similarity to GP:5616171; match to protein family HMM PF01041 YP_268821.1 identified by similarity to GP:4741793; match to protein family HMM PF02348 YP_268822.1 identified by similarity to GP:5616173 YP_268823.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL01RS1320 YP_268824.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102 YP_268827.1 identified by match to protein family HMM PF01943 YP_268829.1 identified by match to protein family HMM PF00535 YP_268831.1 identified by match to protein family HMM PF00534 YP_268832.1 identified by match to protein family HMM PF00535 YP_268833.1 identified by similarity to SP:P25520; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_268834.1 identified by match to protein family HMM PF00342 YP_268835.1 identified by similarity to OMNI:PP2344 YP_268836.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_268837.1 identified by match to protein family HMM PF08003; match to protein family HMM TIGR00452 YP_268838.1 identified by match to protein family HMM TIGR00740 YP_268839.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_268840.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_268841.1 identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228 YP_268842.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084 YP_268843.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_268844.1 identified by match to protein family HMM TIGR01730 YP_268845.1 identified by match to protein family HMM PF00005 YP_268846.1 identified by match to protein family HMM PF02687 YP_268847.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_268848.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_268850.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_268851.1 identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_268852.1 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 YP_268853.1 identified by similarity to OMNI:SO2800; match to protein family HMM PF03966 YP_268854.1 identified by similarity to SP:P04951; match to protein family HMM PF02348; match to protein family HMM TIGR00466 YP_268855.1 identified by match to protein family HMM PF02036 YP_268857.1 identified by similarity to GP:26110166; match to protein family HMM PF01136 YP_268858.1 identified by match to protein family HMM PF01136 YP_268859.1 identified by similarity to OMNI:NTL01ST1194; match to protein family HMM PF08007 YP_268860.1 identified by similarity to SP:P35559; match to protein family HMM PF00675; match to protein family HMM PF05193 YP_268861.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_268862.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF06844 YP_268864.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_268865.1 identified by similarity to GP:29895165 YP_268866.1 identified by similarity to SP:P39694; match to protein family HMM TIGR00426 YP_268867.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_268868.1 identified by similarity to SP:P23845; match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR02034 YP_268869.1 identified by similarity to SP:P72958; match to protein family HMM PF02080 YP_268870.1 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_268871.1 identified by similarity to GP:28807861 YP_268872.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_268873.1 identified by similarity to OMNI:SO2504 YP_268874.1 identified by match to protein family HMM PF03942 YP_268875.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_268877.1 identified by match to protein family HMM PF03160 YP_268878.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_268879.1 identified by match to protein family HMM PF00561 YP_268880.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_268881.1 identified by similarity to SP:Q15738; match to protein family HMM PF01073; match to protein family HMM PF07993 YP_268882.1 identified by similarity to GP:6691653; match to protein family HMM PF03061 YP_268883.1 identified by similarity to SP:P40288; match to protein family HMM PF00106 YP_268887.1 identified by similarity to GP:15822607 YP_268888.1 identified by similarity to OMNI:NTL01ATA1056; match to protein family HMM PF03690 YP_268889.1 identified by similarity to OMNI:NTL03PA01645 YP_268893.1 identified by similarity to OMNI:NTL03PA03663; match to protein family HMM PF03692 YP_268895.1 identified by similarity to GP:28808247 YP_268896.1 identified by similarity to GP:28809001 YP_268897.1 identified by match to protein family HMM PF02371 YP_268898.1 identified by similarity to SP:Q08790; match to protein family HMM PF00061 YP_268904.1 identified by match to protein family HMM PF00583 YP_268906.1 identified by match to protein family HMM PF00583 YP_268910.1 identified by similarity to OMNI:SO3361; match to protein family HMM PF05960 YP_268912.1 identified by match to protein family HMM PF00583 YP_268913.1 identified by match to protein family HMM PF04389 YP_268914.1 identified by similarity to OMNI:SO3107 YP_268915.1 identified by similarity to GP:2239081; match to protein family HMM PF00266 YP_268916.1 identified by similarity to SP:Q59384; match to protein family HMM PF00903 YP_268918.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_268919.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_268920.1 identified by similarity to SP:P97054; match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_268921.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_268922.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_268923.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_268924.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_268925.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_268926.1 identified by similarity to GP:28807456; match to protein family HMM PF02576 YP_268927.1 identified by similarity to SP:P03003; match to protein family HMM PF00575; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954 YP_268928.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_268929.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_268930.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_268931.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_268932.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_268933.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_268936.1 identified by similarity to SP:P77444; match to protein family HMM PF00266; match to protein family HMM PF02657; match to protein family HMM TIGR01979 YP_268937.1 identified by match to protein family HMM PF00899 YP_268939.1 identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798 YP_268940.1 identified by similarity to SP:P10446; match to protein family HMM PF01127 YP_268941.1 identified by similarity to SP:P10445 YP_268942.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_268943.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_268944.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_268945.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 YP_268946.1 catalyzes the interconversion of succinyl-CoA and succinate YP_268947.1 identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_268949.1 identified by match to protein family HMM PF00132 YP_268951.1 identified by match to protein family HMM PF02517 YP_268957.1 identified by similarity to GP:27359133 YP_268961.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_268962.1 identified by similarity to SP:P43154; match to protein family HMM PF01752 YP_268964.1 identified by similarity to GP:27352943; match to protein family HMM PF00892 YP_268967.1 identified by match to protein family HMM PF00571 YP_268968.1 identified by similarity to SP:P43329; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_268969.1 identified by similarity to OMNI:NTL03PA02799 YP_268972.1 identified by similarity to OMNI:SO1149 YP_268973.1 catalyzes the hydrolysis of acylphosphate YP_268974.1 identified by similarity to OMNI:PP2138; match to protein family HMM PF07866 YP_268975.1 identified by similarity to OMNI:SO2917 YP_268976.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_268977.1 identified by similarity to OMNI:SO0923; match to protein family HMM PF03724 YP_268978.1 identified by similarity to OMNI:SO3776 YP_268980.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 YP_268981.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_268983.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_268984.1 identified by similarity to OMNI:PP1497; match to protein family HMM PF00440 YP_268985.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_268986.1 identified by match to protein family HMM PF00310 YP_268988.1 identified by similarity to OMNI:VC1614; match to protein family HMM PF05971 YP_268989.1 identified by similarity to GP:28806858 YP_268990.1 identified by similarity to OMNI:SO4035 YP_268992.1 helicase involved in DNA repair and perhaps also replication YP_268993.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_268994.1 catalyzes the formation of L-homocysteine from cystathionine YP_268996.1 identified by similarity to GP:27361548; match to protein family HMM PF01230 YP_268997.1 identified by similarity to GP:27316477; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_268998.1 identified by similarity to OMNI:VCA0850; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_268999.1 identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_269000.1 Represses the expression of the zwf, eda, glp and gap YP_269001.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_269002.1 identified by match to protein family HMM TIGR01198 YP_269003.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_269004.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_269009.1 identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_269010.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_269011.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_269012.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_269013.1 identified by similarity to GP:28807052; match to protein family HMM PF02620 YP_269014.1 identified by similarity to SP:P02435; match to protein family HMM PF01783; match to protein family HMM TIGR01031 YP_269015.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_269016.1 identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_269017.1 identified by similarity to SP:P25716; match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_269018.1 identified by similarity to SP:P02901; match to protein family HMM PF00550; match to protein family HMM TIGR00517 YP_269019.1 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_269020.1 identified by similarity to SP:P28305; match to protein family HMM PF01063 YP_269021.1 identified by similarity to OMNI:VC2017; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_269022.1 identified by similarity to GB:BAA35905.1; match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_269023.1 identified by similarity to SP:P28631 YP_269024.1 identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238 YP_269025.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_269026.1 identified by similarity to SP:P03819 YP_269028.1 identified by match to protein family HMM PF00657 YP_269029.1 identified by match to protein family HMM PF00005 YP_269030.1 identified by match to protein family HMM PF02687 YP_269031.1 identified by match to protein family HMM PF01594 YP_269034.1 identified by similarity to OMNI:SO2920 YP_269036.1 identified by match to protein family HMM PF03795 YP_269037.1 identified by match to protein family HMM PF04279; match to protein family HMM TIGR00997 YP_269039.1 identified by similarity to SP:Q51481; match to protein family HMM PF07728 YP_269040.1 identified by similarity to GP:11344608; match to protein family HMM PF00510 YP_269041.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269044.1 identified by match to protein family HMM PF00092 YP_269045.1 identified by similarity to OMNI:NTL03PA00527 YP_269046.1 identified by similarity to SP:P75824; match to protein family HMM PF00111 YP_269047.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_269048.1 Catalyzes the rate-limiting step in dNTP synthesis YP_269049.1 identified by similarity to SP:P17993 YP_269050.1 Involved in ubiquinone biosynthesis YP_269051.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_269052.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_269053.1 identified by similarity to SP:P07637; match to protein family HMM PF00275; match to protein family HMM TIGR01356 YP_269054.1 identified by similarity to SP:P23863; match to protein family HMM PF02224; match to protein family HMM TIGR00017 YP_269055.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_269056.1 identified by match to protein family HMM PF00216; match to protein family HMM TIGR00988 YP_269058.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_269059.1 identified by similarity to SP:P08244; match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_269060.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_269061.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_269062.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_269063.1 identified by similarity to GP:28807148 YP_269064.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_269065.1 identified by similarity to OMNI:SO0974 YP_269066.1 identified by similarity to GP:3228385; match to protein family HMM PF04358 YP_269067.1 identified by similarity to GP:3228384 YP_269068.1 identified by similarity to SP:O87897; match to protein family HMM PF02635 YP_269069.1 identified by similarity to SP:O87896; match to protein family HMM PF02635 YP_269070.1 identified by match to protein family HMM PF01027 YP_269071.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_269073.1 identified by similarity to PIR:C85822; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_269076.1 identified by similarity to SP:P22304; match to protein family HMM PF00884 YP_269077.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_269078.1 identified by match to protein family HMM PF00036 YP_269080.1 identified by match to protein family HMM PF00150 YP_269081.1 identified by similarity to GP:27362249 YP_269082.1 identified by match to protein family HMM PF00884 YP_269083.1 identified by similarity to GP:7259476; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_269084.1 identified by match to protein family HMM PF00657 YP_269085.1 identified by similarity to GP:8101027; match to protein family HMM PF00884 YP_269086.1 identified by similarity to GP:8101027; match to protein family HMM PF00884 YP_269087.1 identified by match to protein family HMM PF00331 YP_269088.1 identified by match to protein family HMM PF00331 YP_269089.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_269092.1 identified by match to protein family HMM PF00150 YP_269093.1 identified by similarity to GP:3046314; match to protein family HMM PF00884 YP_269094.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_269095.1 identified by match to protein family HMM PF00331 YP_269096.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_269097.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_269099.1 identified by match to protein family HMM PF00884 YP_269102.1 identified by match to protein family HMM PF00873 YP_269103.1 identified by match to protein family HMM TIGR01730 YP_269104.1 identified by similarity to SP:P77211; match to protein family HMM PF02321 YP_269105.1 identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269106.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269107.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272 YP_269108.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_269109.1 identified by similarity to OMNI:NTL01ATA1756 YP_269110.1 identified by similarity to GP:27355707 YP_269111.1 identified by similarity to OMNI:NTL01AA00024; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_269116.1 identified by match to protein family HMM PF00656 YP_269124.1 identified by match to protein family HMM PF01764 YP_269125.1 identified by similarity to GB:AAL21968.1 YP_269126.1 identified by match to protein family HMM PF01527 YP_269127.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269128.1 identified by similarity to SP:P23171 YP_269129.1 identified by match to protein family HMM PF02810 YP_269132.1 identified by match to protein family HMM PF01396 YP_269133.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269134.1 identified by match to protein family HMM PF00580 YP_269136.1 identified by similarity to OMNI:PSPTO4436; match to protein family HMM PF04134 YP_269137.1 identified by similarity to OMNI:NTL01SM00184 YP_269138.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269139.1 identified by similarity to OMNI:VC0131 YP_269140.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_269141.1 identified by match to protein family HMM PF01323 YP_269143.1 identified by match to protein family HMM PF00664 YP_269144.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_269145.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_269146.1 This protein, the longest in Colwellia psychrerythraea 34H, consists largely of 19 copies of a repeat of approx. 100 amino acids; identified by match to protein family HMM TIGR01965 YP_269149.1 identified by match to protein family HMM PF02368 YP_269152.1 identified by similarity to GP:3891593; match to protein family HMM PF02798 YP_269156.1 identified by match to protein family HMM TIGR00688 YP_269157.1 identified by similarity to SP:O68146; match to protein family HMM PF00199 YP_269158.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269162.1 identified by similarity to OMNI:SO2846; match to protein family HMM PF01925 YP_269164.1 identified by match to protein family HMM PF00440 YP_269165.1 identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_269168.1 identified by match to protein family HMM PF03773 YP_269169.1 identified by match to protein family HMM PF01022 YP_269170.1 identified by similarity to SP:P15038; match to protein family HMM PF00580; match to protein family HMM PF01396 YP_269172.1 identified by similarity to SP:P25519 YP_269174.1 identified by similarity to GP:28806271; match to protein family HMM PF01906 YP_269177.1 identified by similarity to GP:28806645; match to protein family HMM PF01925 YP_269178.1 identified by similarity to GP:28806358 YP_269180.1 identified by match to protein family HMM PF00583 YP_269181.1 identified by similarity to GP:27353840; match to protein family HMM PF07883 YP_269184.1 identified by similarity to GP:609234; match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_269185.1 identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063 YP_269186.1 identified by match to protein family HMM PF00497 YP_269187.1 identified by match to protein family HMM PF03315 YP_269188.1 identified by match to protein family HMM PF00267 YP_269189.1 identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269191.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_269192.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931 YP_269193.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_269194.1 identified by similarity to SP:P40875; match to protein family HMM TIGR01373 YP_269195.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374 YP_269196.1 identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_269197.1 identified by similarity to SP:Q46338; match to protein family HMM PF04268 YP_269198.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_269199.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_269200.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_269203.1 identified by match to protein family HMM PF00583 YP_269205.1 identified by match to protein family HMM PF00583 YP_269206.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF07883 YP_269208.1 identified by similarity to OMNI:NTL01SS01112 YP_269211.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_269213.1 identified by similarity to OMNI:CC2071 YP_269214.1 identified by similarity to OMNI:SO1615 YP_269215.1 identified by match to protein family HMM PF01965 YP_269217.1 identified by similarity to OMNI:NTL01MM3128 YP_269220.1 identified by match to protein family HMM PF00583 YP_269221.1 identified by match to protein family HMM PF03734 YP_269223.1 identified by similarity to OMNI:PP4199 YP_269224.1 identified by match to protein family HMM PF01810 YP_269225.1 identified by similarity to SP:P45409 YP_269226.1 identified by match to protein family HMM PF00440 YP_269227.1 identified by match to protein family HMM PF04982 YP_269228.1 identified by similarity to OMNI:SO0788 YP_269230.1 identified by similarity to OMNI:PP0426 YP_269233.1 identified by similarity to OMNI:PP4314; match to protein family HMM PF04828 YP_269234.1 identified by similarity to OMNI:SO4330 YP_269235.1 identified by similarity to GP:27361412 YP_269236.1 identified by similarity to OMNI:NTL01SS00738 YP_269237.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269238.1 identified by similarity to SP:P42086; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_269239.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269240.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269242.1 identified by match to protein family HMM PF02687 YP_269243.1 identified by match to protein family HMM PF00005 YP_269244.1 identified by similarity to SP:P52046; match to protein family HMM PF00378 YP_269245.1 identified by similarity to OMNI:NTL02ML4083 YP_269246.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269247.1 identified by similarity to OMNI:SO2113; match to protein family HMM PF04357 YP_269248.1 identified by similarity to OMNI:SO2114; match to protein family HMM PF01103; match to protein family HMM PF07244 YP_269250.1 identified by similarity to GP:27361794 YP_269251.1 identified by similarity to SP:P54563 YP_269255.1 identified by match to protein family HMM PF00583 YP_269259.1 identified by similarity to GP:3659895 YP_269261.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_269263.1 identified by similarity to OMNI:VCA0432 YP_269267.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF03692 YP_269269.1 identified by similarity to GP:4877698; match to protein family HMM PF01546; match to protein family HMM PF04389 YP_269270.1 identified by match to protein family HMM PF00583 YP_269273.1 identified by match to protein family HMM PF00246 YP_269274.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_269275.1 identified by match to protein family HMM PF00165 YP_269276.1 identified by similarity to OMNI:PP3145 YP_269277.1 identified by match to protein family HMM TIGR01730 YP_269278.1 identified by match to protein family HMM PF00873 YP_269279.1 identified by similarity to OMNI:SO2423 YP_269280.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269283.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269286.1 identified by similarity to SP:P21861; match to protein family HMM PF00583 YP_269288.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07676 YP_269289.1 identified by similarity to OMNI:NTL02ML1735 YP_269290.1 identified by similarity to GP:21685493 YP_269291.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_269292.1 identified by match to protein family HMM PF00165 YP_269294.1 identified by similarity to OMNI:PSPTO0468 YP_269295.1 identified by similarity to OMNI:NTL01PM1724; match to protein family HMM PF05164 YP_269296.1 blocks the formation of polar Z-ring septums YP_269297.1 identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_269298.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215 YP_269299.1 converts asparagine to aspartate and ammonia YP_269300.1 identified by similarity to OMNI:NTL01EC01734; match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706 YP_269301.1 identified by match to protein family HMM PF07681 YP_269302.1 identified by similarity to OMNI:NTL03PA02101; match to protein family HMM PF00892 YP_269305.1 identified by match to protein family HMM PF00881 YP_269306.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_269308.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508 YP_269309.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_269310.1 identified by match to protein family HMM PF00155 YP_269311.1 identified by similarity to SP:P12999; match to protein family HMM TIGR02072 YP_269312.1 identified by match to protein family HMM TIGR00347 YP_269313.1 identified by similarity to OMNI:PSPTO1635 YP_269314.1 identified by similarity to SP:P06138; match to protein family HMM PF00091; match to protein family HMM PF03953 YP_269315.1 identified by match to protein family HMM PF00563 YP_269316.1 identified by match to protein family HMM PF00578 YP_269317.1 identified by similarity to GB:AAO07221.1 YP_269320.1 identified by match to protein family HMM PF00126 YP_269322.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07494; match to protein family HMM PF07495; match to protein family HMM TIGR00254 YP_269324.1 identified by similarity to OMNI:NTL01YP1193 YP_269325.1 identified by similarity to OMNI:NTL01SF2126; match to protein family HMM PF07208 YP_269326.1 identified by similarity to SP:P33920; match to protein family HMM PF04245 YP_269327.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_269328.1 identified by similarity to OMNI:SO2179 YP_269329.1 identified by match to protein family HMM PF01551 YP_269331.1 identified by similarity to OMNI:SO4007 YP_269332.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269333.1 with TehA confers resistance to tellurite YP_269336.1 identified by match to protein family HMM PF00582 YP_269337.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_269338.1 identified by similarity to OMNI:SO0733 YP_269339.1 catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA YP_269340.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_269342.1 identified by similarity to OMNI:NTL01NS3385 YP_269343.1 identified by match to protein family HMM PF00589 YP_269348.1 This is a extracellular ribonuclease/nuclease fusion protein; identified by similarity to PIR:T31332; match to protein family HMM PF03372; match to protein family HMM PF04231 YP_269350.1 identified by match to protein family HMM PF00892 YP_269352.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae YP_269354.1 identified by match to protein family HMM PF00005 YP_269355.1 identified by match to protein family HMM PF02687 YP_269357.1 identified by match to protein family HMM PF00583 YP_269359.1 identified by match to protein family HMM TIGR01352 YP_269360.1 identified by match to protein family HMM PF00754; match to protein family HMM PF00801 YP_269361.1 identified by similarity to OMNI:NTL01XA1535; match to protein family HMM PF07221 YP_269362.1 identified by match to protein family HMM PF00294 YP_269363.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272 YP_269364.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_269365.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_269366.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_269367.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_269368.1 identified by match to protein family HMM PF00801 YP_269369.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269370.1 identified by match to protein family HMM PF05257 YP_269372.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_269374.1 identified by match to protein family HMM PF00015 YP_269376.1 identified by match to protein family HMM PF00563 YP_269378.1 identified by similarity to GP:27361667; match to protein family HMM PF07804; match to protein family HMM PF07805 YP_269379.1 identified by match to protein family HMM PF01381 YP_269380.1 identified by similarity to SP:P76397; match to protein family HMM TIGR01730 YP_269381.1 identified by match to protein family HMM PF00873 YP_269382.1 identified by similarity to OMNI:VCA0634 YP_269383.1 identified by similarity to SP:P33596; match to protein family HMM PF02631 YP_269384.1 identified by similarity to GP:29898988 YP_269385.1 identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013 YP_269386.1 identified by similarity to OMNI:CC2974 YP_269387.1 identified by similarity to SP:P39100; match to protein family HMM PF02798 YP_269388.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269389.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_269390.1 identified by similarity to SP:P80449; match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_269391.1 identified by match to protein family HMM PF00106 YP_269392.1 identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063 YP_269396.1 identified by similarity to SP:P04152; match to protein family HMM PF00817 YP_269397.1 identified by similarity to SP:P04153; match to protein family HMM PF00717 YP_269398.1 identified by match to protein family HMM PF01957 YP_269399.1 identified by match to protein family HMM PF01145 YP_269401.1 identified by similarity to OMNI:SO3335; match to protein family HMM PF06167 YP_269405.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_269406.1 identified by match to protein family HMM PF00246 YP_269407.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_269408.1 identified by match to protein family HMM PF05088 YP_269410.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_269411.1 identified by similarity to SP:P19933; match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_269412.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269413.1 identified by match to protein family HMM PF01323 YP_269414.1 identified by match to protein family HMM PF02600 YP_269415.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_269416.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_269417.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269418.1 identified by similarity to OMNI:NTL01RS1878 YP_269420.1 identified by match to protein family HMM PF00795 YP_269423.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269425.1 identified by similarity to OMNI:PP5384; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_269426.1 identified by similarity to SP:P45337; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269427.1 identified by similarity to SP:P00556; match to protein family HMM PF01219 YP_269428.1 identified by match to protein family HMM PF00884 YP_269429.1 identified by match to protein family HMM PF00884; match to protein family HMM PF08019 YP_269430.1 identified by match to protein family HMM PF00165 YP_269431.1 identified by similarity to SP:P45857; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_269432.1 identified by similarity to GP:13310127; match to protein family HMM PF00106 YP_269434.1 identified by similarity to SP:Q9UHK6; match to protein family HMM PF02515 YP_269435.1 identified by match to protein family HMM PF03929 YP_269436.1 identified by similarity to SP:P16869; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_269440.1 identified by similarity to GP:29608450 YP_269441.1 identified by similarity to SP:P77567; match to protein family HMM PF00797 YP_269442.1 identified by match to protein family HMM PF00892 YP_269443.1 identified by match to protein family HMM PF00027 YP_269445.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_269447.1 identified by similarity to OMNI:NMB0783 YP_269450.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF04229 YP_269451.1 identified by match to protein family HMM PF01389 YP_269454.1 identified by similarity to GP:151307; match to protein family HMM PF01548; match to protein family HMM PF02371 YP_269458.1 identified by match to protein family HMM PF01266 YP_269459.1 catalyzes the formation of L-proline from L-ornithine YP_269460.1 identified by match to protein family HMM PF00165 YP_269461.1 identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_269463.1 identified by similarity to OMNI:NTL03PA01898 YP_269464.1 identified by match to protein family HMM PF00583 YP_269467.1 identified by similarity to SP:P09156; match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_269468.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_269469.1 identified by match to protein family HMM PF00004 YP_269470.1 identified by similarity to SP:P39178; match to protein family HMM PF03548; match to protein family HMM TIGR00547 YP_269471.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_269472.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_269473.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_269474.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_269475.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_269476.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_269477.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_269478.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269479.1 identified by match to protein family HMM TIGR01447 YP_269480.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_269481.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_269483.1 identified by match to protein family HMM PF00501 YP_269484.1 identified by similarity to SP:Q99ZA8 YP_269486.1 identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_269487.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269488.1 identified by match to protein family HMM PF01841 YP_269489.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF01882 YP_269490.1 identified by similarity to OMNI:NTL01RSA0109; match to protein family HMM PF07726 YP_269491.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_269492.1 identified by similarity to OMNI:SO2181 YP_269493.1 identified by similarity to OMNI:SO2929 YP_269496.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269497.1 identified by similarity to SP:P30844; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269498.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269499.1 identified by match to protein family HMM PF02424 YP_269500.1 identified by similarity to OMNI:SO2102 YP_269502.1 identified by similarity to SP:P33926 YP_269504.1 identified by similarity to GP:3123728 YP_269506.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_269507.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_269508.1 identified by match to protein family HMM PF01292 YP_269509.1 identified by similarity to OMNI:NTL03PA04580 YP_269510.1 identified by similarity to OMNI:PP0679 YP_269511.1 identified by similarity to SP:P00142; match to protein family HMM PF01322 YP_269512.1 identified by similarity to SP:P05021; match to protein family HMM PF01180; match to protein family HMM TIGR01036 YP_269514.1 identified by match to protein family HMM PF05088 YP_269517.1 identified by similarity to OMNI:SO2596; match to protein family HMM PF07044 YP_269518.1 identified by similarity to OMNI:SO2597; match to protein family HMM PF06980 YP_269519.1 identified by similarity to OMNI:VC1493 YP_269520.1 identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_269521.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931 YP_269522.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_269523.1 affects solute and DNA transport through an unknown mechanism YP_269525.1 identified by similarity to OMNI:NTL03EC2549 YP_269527.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269528.1 identified by similarity to GP:805008; similarity to SP:P23484; match to protein family HMM PF04542 YP_269529.1 identified by match to protein family HMM PF04773 YP_269530.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_269531.1 identified by similarity to GP:28806636; match to protein family HMM PF04303; match to protein family HMM TIGR02334 YP_269532.1 Catalyzes the conversion of citrate to isocitrate YP_269533.1 identified by similarity to SP:P31660; match to protein family HMM PF00285; match to protein family HMM TIGR01800 YP_269534.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_269535.1 identified by similarity to SP:P06957; match to protein family HMM PF00392; match to protein family HMM PF07729 YP_269536.1 identified by similarity to GP:28808249; match to protein family HMM PF06041 YP_269537.1 identified by match to protein family HMM PF00903 YP_269538.1 identified by similarity to OMNI:PP2305; match to protein family HMM PF01734 YP_269539.1 identified by match to protein family HMM PF04828 YP_269541.1 identified by similarity to OMNI:SO2351; match to protein family HMM TIGR01826 YP_269542.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_269543.1 identified by similarity to SP:P21590 YP_269544.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_269545.1 identified by similarity to SP:P28633 YP_269546.1 identified by similarity to SP:P28634; match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_269548.1 identified by similarity to SP:P25397 YP_269551.1 identified by similarity to SP:P30856; match to protein family HMM PF00254 YP_269552.1 identified by match to protein family HMM PF00892 YP_269553.1 identified by match to protein family HMM TIGR00618 YP_269554.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity YP_269555.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269556.1 identified by similarity to SP:P43531; match to protein family HMM PF07690 YP_269558.1 identified by match to protein family HMM PF06063 YP_269559.1 identified by match to protein family HMM PF03591 YP_269560.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR01563 YP_269562.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_269563.1 identified by match to protein family HMM PF01527 YP_269568.1 identified by similarity to SP:P27457 YP_269570.1 identified by similarity to GP:20095134 YP_269571.1 identified by similarity to OMNI:CC2702 YP_269572.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_269573.1 identified by match to protein family HMM TIGR01730 YP_269576.1 identified by similarity to GP:2921857; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04151 YP_269577.1 identified by match to protein family HMM PF03171 YP_269578.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269580.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_269584.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_269586.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_269587.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_269588.1 identified by match to protein family HMM PF04055 YP_269590.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_269591.1 identified by similarity to OMNI:SO4126 YP_269592.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_269593.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_269594.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_269595.1 identified by similarity to SP:Q8XG13; match to protein family HMM PF02617 YP_269596.1 identified by similarity to SP:P24245; match to protein family HMM PF00313; match to protein family HMM TIGR02381 YP_269597.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183 YP_269598.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_269599.1 identified by similarity to SP:P75966; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_269600.1 identified by match to protein family HMM PF00293 YP_269601.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_269602.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_269603.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_269604.1 identified by similarity to OMNI:SO2637 YP_269605.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_269606.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_269607.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_269608.1 identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_269609.1 identified by similarity to SP:P02999; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_269610.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_269612.1 identified by similarity to GP:27359278 YP_269613.1 identified by similarity to SP:P08811; match to protein family HMM PF00037 YP_269614.1 identified by similarity to SP:Q9H479; match to protein family HMM PF03881 YP_269615.1 identified by similarity to OMNI:SO2297 YP_269616.1 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_269617.1 identified by match to protein family HMM PF00589 YP_269620.1 identified by match to protein family HMM PF01546 YP_269621.1 identified by match to protein family HMM PF00733 YP_269623.1 identified by match to protein family HMM PF01522 YP_269625.1 identified by similarity to OMNI:NTL01MK1386 YP_269626.1 identified by similarity to GP:5107542; match to protein family HMM PF00590 YP_269627.1 identified by similarity to OMNI:NTL02MA4168; match to protein family HMM PF03781 YP_269628.1 identified by similarity to OMNI:NTL02SC0765 YP_269629.1 identified by match to protein family HMM PF00583 YP_269630.1 identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063 YP_269631.1 identified by similarity to OMNI:SO1990 YP_269633.1 identified by match to protein family HMM PF01242 YP_269634.1 identified by similarity to GP:16505890 YP_269637.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_269641.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_269645.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_269646.1 identified by match to protein family HMM PF00176 YP_269648.1 identified by similarity to OMNI:VC1809 YP_269649.1 identified by similarity to OMNI:SO1451 YP_269650.1 identified by similarity to SP:P12552; match to protein family HMM PF05930 YP_269651.1 identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_269652.1 identified by similarity to OMNI:SO1451 YP_269653.1 identified by match to protein family HMM PF00589 YP_269654.1 identified by similarity to OMNI:SO1443 YP_269658.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_269659.1 identified by match to protein family HMM PF01527 YP_269662.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_269663.1 identified by match to protein family HMM PF01527 YP_269666.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM TIGR02595 YP_269669.1 identified by match to protein family HMM PF07690 YP_269670.1 identified by match to protein family HMM PF00571 YP_269671.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269672.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_269673.1 identified by similarity to OMNI:VCA0582 YP_269674.1 identified by match to protein family HMM PF01171 YP_269675.1 identified by similarity to SP:P27297; match to protein family HMM PF01832 YP_269677.1 identified by match to protein family HMM PF01810 YP_269679.1 identified by similarity to OMNI:SO1715 YP_269680.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_269681.1 identified by similarity to GP:8886019; match to protein family HMM PF01663 YP_269682.1 identified by match to protein family HMM PF00165 YP_269683.1 identified by similarity to EGAD:56693; match to protein family HMM PF00884 YP_269684.1 identified by similarity to SP:P25549; match to protein family HMM PF00884 YP_269685.1 identified by similarity to SP:P25549; match to protein family HMM PF00884 YP_269686.1 identified by similarity to GP:27358184; match to protein family HMM PF03781 YP_269687.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_269688.1 identified by similarity to OMNI:NTL03PA03070; match to protein family HMM PF07726 YP_269689.1 identified by similarity to GP:28808921; match to protein family HMM PF01882 YP_269691.1 identified by match to protein family HMM PF00092 YP_269693.1 identified by match to protein family HMM PF00216; match to protein family HMM TIGR00987 YP_269694.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_269695.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_269697.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_269703.1 identified by match to protein family HMM PF04945 YP_269706.1 identified by similarity to SP:P56947 YP_269708.1 identified by similarity to OMNI:VCA0649 YP_269709.1 identified by similarity to GP:27359990 YP_269710.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_269712.1 identified by similarity to OMNI:SO2645; match to protein family HMM PF03618 YP_269713.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_269714.1 identified by similarity to SP:P53433; match to protein family HMM PF01451 YP_269715.1 identified by similarity to OMNI:NTL01RS1767 YP_269716.1 identified by similarity to GP:29603944 YP_269717.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269719.1 identified by match to protein family HMM PF02096 YP_269720.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269721.1 identified by match to protein family HMM PF01389 YP_269723.1 identified by similarity to SP:P39345 YP_269725.1 identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_269728.1 identified by match to protein family HMM PF00529 YP_269729.1 identified by similarity to GP:28809881 YP_269730.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269731.1 identified by similarity to SP:P25549; match to protein family HMM PF00884 YP_269732.1 identified by similarity to SP:P10151; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269737.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269738.1 identified by match to protein family HMM PF00614 YP_269741.1 identified by match to protein family HMM PF00015 YP_269742.1 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_269743.1 identified by similarity to SP:O69415; match to protein family HMM TIGR01410 YP_269744.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_269745.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269746.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_269747.1 identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_269748.1 identified by similarity to GP:27359573 YP_269749.1 identified by similarity to SP:P27746; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_269750.1 identified by similarity to GP:472326; match to protein family HMM PF00676 YP_269751.1 identified by similarity to GP:6648630 YP_269752.1 identified by match to protein family HMM TIGR01409 YP_269755.1 identified by match to protein family HMM PF00903 YP_269757.1 identified by similarity to SP:P14707; match to protein family HMM PF01548; match to protein family HMM PF02371 YP_269763.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269764.1 identified by similarity to GP:27358757; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269766.1 identified by match to protein family HMM PF01625 YP_269767.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_269768.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_269769.1 identified by similarity to OMNI:NTL03PA00919 YP_269772.1 identified by similarity to GP:595862 YP_269773.1 identified by match to protein family HMM PF00165 YP_269774.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155 YP_269775.1 identified by similarity to SP:P43671 YP_269776.1 identified by match to protein family HMM PF03886 YP_269781.1 identified by similarity to SP:P36880; match to protein family HMM PF01061 YP_269782.1 identified by similarity to SP:P36879; match to protein family HMM PF00005 YP_269783.1 identified by match to protein family HMM PF01979 YP_269784.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269785.1 identified by match to protein family HMM PF01810 YP_269787.1 identified by similarity to OMNI:NTL03PA00576; match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_269788.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_269789.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_269791.1 identified by similarity to OMNI:CT1379 YP_269792.1 identified by match to protein family HMM PF03061 YP_269794.1 identified by match to protein family HMM PF05724 YP_269795.1 identified by match to protein family HMM PF05163 YP_269797.1 identified by similarity to GP:6691657 YP_269799.1 identified by match to protein family HMM PF01541 YP_269800.1 identified by similarity to GP:6691656; match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM PF07977 YP_269801.1 identified by similarity to GP:6691655; match to protein family HMM PF02801 YP_269802.1 identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_269803.1 identified by similarity to PIR:T30182 YP_269804.1 identified by similarity to GP:6635394; match to protein family HMM PF01648 YP_269805.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269806.1 identified by similarity to OMNI:NTL03PA02095 YP_269808.1 identified by similarity to SP:P77258; match to protein family HMM PF00724 YP_269809.1 identified by match to protein family HMM PF00465 YP_269811.1 identified by match to protein family HMM PF00583 YP_269812.1 identified by match to protein family HMM PF00149 YP_269813.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_269818.1 identified by match to protein family HMM PF01527 YP_269819.1 identified by similarity to SP:P05822; match to protein family HMM PF00665 YP_269826.1 identified by match to protein family HMM PF00583 YP_269827.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_269828.1 identified by match to protein family HMM PF03167 YP_269829.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF06042 YP_269830.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_269832.1 identified by similarity to OMNI:VC0802 YP_269834.1 identified by match to protein family HMM PF02566 YP_269835.1 identified by match to protein family HMM PF00376 YP_269836.1 identified by match to protein family HMM PF02627 YP_269839.1 identified by match to protein family HMM PF01810 YP_269840.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_269843.1 identified by match to protein family HMM PF02659 YP_269844.1 identified by match to protein family HMM PF00903 YP_269845.1 identified by similarity to SP:P23857; match to protein family HMM PF00581 YP_269846.1 identified by similarity to SP:Q47142; match to protein family HMM PF07690 YP_269847.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_269848.1 involved in methylation of ribosomal protein L3 YP_269850.1 identified by match to protein family HMM PF01713 YP_269851.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_269852.1 identified by similarity to GP:184556; match to protein family HMM PF00675; match to protein family HMM PF05193 YP_269853.2 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate YP_269854.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_269856.1 identified by similarity to OMNI:NTL03PA03070; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_269857.1 identified by similarity to OMNI:SO3091; match to protein family HMM PF01882 YP_269858.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269859.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_269860.1 identified by similarity to GP:4838141 YP_269861.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_269862.1 identified by similarity to OMNI:SO3097 YP_269863.1 identified by match to protein family HMM PF00326 YP_269864.1 identified by similarity to SP:Q9CKJ8 YP_269865.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269866.1 identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269868.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269869.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_269870.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth YP_269871.1 identified by similarity to SP:Q9KT06 YP_269872.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_269873.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_269874.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_269875.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_269876.1 identified by match to protein family HMM PF02557 YP_269878.1 identified by match to protein family HMM PF06804 YP_269881.1 identified by similarity to SP:P23483 YP_269882.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine YP_269883.1 identified by similarity to SP:P77406; match to protein family HMM PF01594 YP_269886.1 identified by similarity to SP:P76568; match to protein family HMM PF01435 YP_269887.1 identified by similarity to SP:P44589; match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_269890.1 identified by similarity to SP:P76570 YP_269891.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269892.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_269893.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_269894.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269898.1 identified by similarity to OMNI:SO1831; match to protein family HMM PF05960 YP_269899.1 identified by match to protein family HMM PF04055 YP_269900.1 identified by similarity to SP:P75790; match to protein family HMM PF00005 YP_269901.1 identified by match to protein family HMM PF04378 YP_269902.1 identified by match to protein family HMM PF01645 YP_269903.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269906.1 identified by match to protein family HMM PF03412 YP_269910.1 identified by match to protein family HMM PF00486 YP_269911.1 identified by similarity to SP:P21507; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_269912.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_269917.1 identified by similarity to GP:15822607 YP_269918.1 identified by similarity to OMNI:VCA0582 YP_269919.1 identified by match to protein family HMM PF00583 YP_269920.1 identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 YP_269922.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_269923.1 identified by similarity to GP:28805913 YP_269926.1 identified by similarity to SP:P40811; match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_269927.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_269928.1 identified by similarity to OMNI:SO2830 YP_269929.1 identified by match to protein family HMM PF01464 YP_269930.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_269931.1 identified by match to protein family HMM PF00072 YP_269932.1 identified by similarity to GP:27361780 YP_269933.1 identified by match to protein family HMM PF00535 YP_269934.1 identified by match to protein family HMM PF01943 YP_269935.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_269937.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_269938.1 identified by similarity to SP:Q04664; match to protein family HMM PF02397 YP_269939.1 identified by match to protein family HMM PF02563 YP_269940.1 identified by similarity to OMNI:NTL01NS2290 YP_269942.1 identified by similarity to GP:6601342 YP_269944.1 identified by match to protein family HMM PF00535 YP_269945.1 identified by match to protein family HMM PF01757 YP_269947.1 identified by match to protein family HMM PF01360 YP_269948.1 identified by similarity to OMNI:SO1500; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_269949.1 identified by similarity to OMNI:PP2945; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_269950.1 identified by similarity to OMNI:NT01MC0853 YP_269951.1 identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_269952.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_269953.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system YP_269956.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_269957.1 identified by similarity to SP:P22986; match to protein family HMM PF04957 YP_269958.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_269959.1 identified by similarity to SP:P43672; match to protein family HMM PF00005 YP_269960.1 identified by similarity to OMNI:NTL03PA03033 YP_269961.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_269962.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_269964.1 identified by similarity to OMNI:NTL03PA01858; match to protein family HMM PF05661 YP_269965.1 identified by match to protein family HMM PF00107 YP_269967.1 identified by similarity to OMNI:SO0721 YP_269969.1 identified by similarity to OMNI:NTL01YP0562 YP_269971.1 identified by similarity to OMNI:SO1984 YP_269972.1 identified by similarity to SP:P03807; match to protein family HMM PF00582 YP_269973.1 identified by similarity to OMNI:CC2074 YP_269974.1 identified by similarity to OMNI:CC1455; match to protein family HMM PF07728 YP_269976.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_269978.1 identified by match to protein family HMM PF03150 YP_269980.1 identified by similarity to SP:P30847; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_269981.1 identified by similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_269983.1 identified by similarity to GP:27358331 YP_269985.1 identified by similarity to SP:P16682; match to protein family HMM TIGR01098 YP_269986.1 identified by match to protein family HMM PF00005 YP_269987.1 identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_269988.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli YP_269990.1 identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184 YP_269991.1 identified by similarity to GP:2642138; match to protein family HMM PF00528 YP_269992.1 identified by similarity to SP:P38043 YP_269993.1 identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_269995.1 identified by similarity to SP:P52046; match to protein family HMM PF00378 YP_269996.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_269997.1 identified by similarity to SP:P14707; match to protein family HMM PF01548; match to protein family HMM PF02371 YP_269998.1 identified by similarity to GP:18250263 YP_269999.1 identified by similarity to GP:2668499 YP_270004.1 identified by match to protein family HMM PF00199 YP_270005.1 identified by similarity to GP:29541645; match to protein family HMM PF07681 YP_270006.1 identified by similarity to SP:O68390; match to protein family HMM PF02566 YP_270007.1 identified by match to protein family HMM PF01047 YP_270010.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05922 YP_270012.1 identified by similarity to OMNI:NTL01NSC0064 YP_270013.1 identified by similarity to SP:Q9Z3Q0 YP_270015.1 identified by similarity to OMNI:SO2827 YP_270016.1 identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932 YP_270017.1 identified by match to protein family HMM PF00440 YP_270018.1 identified by match to protein family HMM PF01925 YP_270019.1 identified by similarity to GP:216374; match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_270020.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270021.1 identified by similarity to GP:11595497; match to protein family HMM PF00501 YP_270022.1 identified by match to protein family HMM PF00378 YP_270023.1 identified by similarity to SP:O06493; match to protein family HMM PF00474 YP_270026.1 identified by match to protein family HMM PF00753 YP_270028.1 identified by match to protein family HMM PF00892 YP_270029.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_270030.1 identified by match to protein family HMM PF07690 YP_270031.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_270033.1 identified by match to protein family HMM PF03773 YP_270034.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01451 YP_270035.1 identified by match to protein family HMM PF00171 YP_270036.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_270039.1 identified by similarity to GP:28809540 YP_270043.1 identified by similarity to SP:P14930; match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00401 YP_270045.1 identified by match to protein family HMM PF00854; match to protein family HMM TIGR00924 YP_270046.1 identified by similarity to SP:P22630; match to protein family HMM PF00128 YP_270047.1 identified by match to protein family HMM PF01575 YP_270048.1 identified by similarity to SP:P72958; match to protein family HMM PF02080 YP_270049.1 identified by match to protein family HMM PF00850 YP_270050.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_270051.1 identified by match to protein family HMM PF01609 YP_270052.1 identified by match to protein family HMM PF06863 YP_270053.1 identified by match to protein family HMM PF06742; match to protein family HMM PF06863 YP_270055.1 identified by match to protein family HMM PF00092 YP_270056.1 identified by match to protein family HMM PF04203 YP_270057.1 identified by similarity to OMNI:NTL01RS0939 YP_270059.1 identified by match to protein family HMM PF00440 YP_270063.1 identified by similarity to GP:27355583; match to protein family HMM PF04828 YP_270065.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_270066.1 identified by match to protein family HMM PF00892 YP_270068.1 identified by match to protein family HMM PF00155 YP_270069.1 identified by similarity to OMNI:NTL01SMA01044 YP_270070.1 identified by match to protein family HMM PF07681 YP_270071.1 identified by match to protein family HMM PF00085 YP_270072.1 identified by similarity to OMNI:VCA0647 YP_270073.1 identified by match to protein family HMM PF00165 YP_270074.1 identified by match to protein family HMM PF00903 YP_270075.1 identified by similarity to OMNI:SO1758 YP_270076.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_270079.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434 YP_270080.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:CC2905 YP_270081.1 identified by similarity to OMNI:CC2906; match to protein family HMM PF05114 YP_270083.1 identified by similarity to OMNI:NTL03PA03887; match to protein family HMM PF00999 YP_270084.1 identified by match to protein family HMM PF00857 YP_270085.1 identified by similarity to OMNI:PG1174; match to protein family HMM PF03061 YP_270086.1 identified by similarity to GP:6715111 YP_270087.1 identified by similarity to OMNI:PP2753; match to protein family HMM PF00005 YP_270088.1 identified by similarity to OMNI:NTL01EC03383 YP_270089.1 identified by match to protein family HMM PF02653 YP_270090.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_270091.1 identified by match to protein family HMM PF00501 YP_270092.1 identified by match to protein family HMM PF00005 YP_270093.1 identified by similarity to OMNI:SO1411 YP_270094.1 identified by similarity to OMNI:SO2742; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_270095.1 identified by similarity to SP:P29369; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_270096.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270098.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_270099.1 identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692 YP_270100.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_270101.1 identified by match to protein family HMM PF03171 YP_270102.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_270103.1 identified by similarity to GP:6740923; match to protein family HMM PF00171 YP_270106.1 identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199 YP_270107.1 identified by similarity to OMNI:PP0765; match to protein family HMM PF06980 YP_270108.1 identified by similarity to OMNI:NTL03PA03922; match to protein family HMM PF07044 YP_270109.1 identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199 YP_270111.1 identified by match to protein family HMM PF03595 YP_270114.1 identified by similarity to SP:P00082; match to protein family HMM PF00034 YP_270117.1 identified by match to protein family HMM PF01758 YP_270118.1 identified by similarity to OMNI:CC2921; match to protein family HMM PF00196 YP_270119.1 identified by match to protein family HMM PF01292 YP_270121.1 identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_270122.1 identified by similarity to SP:P04790; match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_270123.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 YP_270125.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_270126.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_270127.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit YP_270128.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_270129.1 identified by similarity to OMNI:NTL01XC1114 YP_270130.1 identified by match to protein family HMM PF01145 YP_270131.1 identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_270132.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_270133.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_270134.1 identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_270136.1 identified by similarity to SP:P39311; match to protein family HMM PF00254; match to protein family HMM PF01346 YP_270137.1 identified by similarity to SP:O06493; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_270138.1 identified by match to protein family HMM PF00563 YP_270139.1 identified by match to protein family HMM PF03553 YP_270140.1 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_270141.1 identified by similarity to SP:P77173; match to protein family HMM PF04354; match to protein family HMM TIGR02205 YP_270142.1 role in sulfur assimilation YP_270144.1 identified by match to protein family HMM PF01433 YP_270145.1 identified by similarity to SP:P46233; match to protein family HMM PF00691 YP_270147.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_270148.1 identified by match to protein family HMM PF00578 YP_270149.1 identified by match to protein family HMM TIGR00365 YP_270150.1 identified by similarity to SP:P09213; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_270151.1 identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_270152.1 identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_270153.1 identified by similarity to SP:P75956; match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_270154.1 identified by similarity to GP:28805963 YP_270156.1 identified by similarity to SP:P39159; match to protein family HMM PF00639 YP_270157.1 identified by similarity to GP:14277936; match to protein family HMM PF00484 YP_270158.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_270159.1 identified by similarity to GP:27361572; match to protein family HMM PF06798 YP_270160.1 identified by similarity to SP:P59352; match to protein family HMM PF04285 YP_270161.1 identified by match to protein family HMM PF04293 YP_270162.1 Multifunctional regulator of fatty acid metabolism YP_270163.1 identified by similarity to OMNI:NTL02LI3912 YP_270166.1 identified by match to protein family HMM PF00903 YP_270170.1 identified by match to protein family HMM PF00892 YP_270171.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270172.1 identified by match to protein family HMM PF01042 YP_270175.1 identified by match to protein family HMM PF04199 YP_270177.1 This gene assignment is based partly on a clustalw alignment; identified by similarity to OMNI:CC3003 YP_270178.1 identified by match to protein family HMM PF00756 YP_270179.1 identified by match to protein family HMM PF02687 YP_270180.1 identified by match to protein family HMM PF00005 YP_270181.1 identified by match to protein family HMM TIGR01730 YP_270182.1 identified by match to protein family HMM PF00486 YP_270183.1 identified by similarity to OMNI:NTL01XC0042; match to protein family HMM PF01965 YP_270185.1 identified by match to protein family HMM PF00326 YP_270186.1 identified by similarity to GP:3123728 YP_270187.1 identified by similarity to SP:P30018; match to protein family HMM PF02600 YP_270188.1 identified by match to protein family HMM PF00892 YP_270189.1 identified by similarity to OMNI:SO2573 YP_270190.1 identified by similarity to OMNI:PSPTO4817; match to protein family HMM TIGR02283 YP_270191.1 identified by similarity to SP:P76003; match to protein family HMM PF05166 YP_270192.1 identified by similarity to SP:P09155; match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_270193.1 identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_270194.1 identified by similarity to OMNI:VC1178; match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_270195.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_270196.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_270197.1 identified by similarity to SP:P00904; similarity to SP:P00906; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_270198.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245 YP_270199.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_270200.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_270201.1 identified by similarity to SP:P00928; match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_270203.1 identified by similarity to OMNI:PSPTO2748 YP_270205.1 identified by similarity to OMNI:SO1611 YP_270206.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function YP_270207.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_270210.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270211.1 identified by match to protein family HMM PF03641 YP_270212.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups YP_270213.1 identified by similarity to OMNI:SO1548 YP_270214.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_270215.1 identified by similarity to OMNI:NTL01YP0978 YP_270216.1 identified by similarity to GP:28805680; match to protein family HMM PF04241 YP_270217.1 identified by similarity to GP:27359899 YP_270218.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_270221.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_270222.1 identified by match to protein family HMM PF05684 YP_270223.1 identified by similarity to GP:4887120 YP_270224.1 identified by match to protein family HMM PF04247 YP_270225.1 identified by similarity to SP:P37186; match to protein family HMM TIGR00536 YP_270226.1 identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 YP_270228.1 identified by match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035 YP_270229.1 identified by match to protein family HMM PF03550; match to protein family HMM TIGR00548 YP_270230.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 YP_270231.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_270232.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_270233.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_270234.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_270236.1 identified by similarity to SP:P75728; match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_270237.1 identified by similarity to OMNI:SO0141; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_270240.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_270241.1 identified by similarity to SP:P77349; match to protein family HMM PF02562 YP_270242.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_270243.1 identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471 YP_270244.1 identified by similarity to SP:P23930; match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_270245.1 identified by similarity to OMNI:SO0569; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270246.1 identified by similarity to OMNI:SO0570; match to protein family HMM PF00072 YP_270247.1 identified by match to protein family HMM PF00578 YP_270248.1 identified by similarity to SP:P29209; match to protein family HMM PF00011 YP_270250.1 identified by match to protein family HMM PF01360 YP_270251.1 identified by match to protein family HMM PF01035 YP_270252.1 identified by similarity to GP:27361345; match to protein family HMM PF02639 YP_270253.1 identified by match to protein family HMM PF00520 YP_270254.1 identified by match to protein family HMM PF00753 YP_270255.1 identified by match to protein family HMM PF00209 YP_270257.1 identified by similarity to GP:29541794; match to protein family HMM PF02646 YP_270258.1 identified by similarity to SP:Q52154; match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_270259.1 identified by similarity to GP:4007784; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_270260.1 identified by similarity to SP:Q01104; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_270261.1 identified by similarity to SP:P23893; match to protein family HMM PF00202 YP_270262.1 identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; match to protein family HMM TIGR02430 YP_270263.1 identified by match to protein family HMM PF00293 YP_270264.1 identified by match to protein family HMM PF01638 YP_270265.1 identified by similarity to SP:P35163; match to protein family HMM PF00072 YP_270266.1 identified by similarity to OMNI:NTL03PA00424; match to protein family HMM PF04264 YP_270267.1 identified by match to protein family HMM PF01292 YP_270268.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270269.1 identified by match to protein family HMM PF07690 YP_270270.1 identified by match to protein family HMM PF00165 YP_270271.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270272.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270274.1 identified by match to protein family HMM PF05656 YP_270276.1 identified by similarity to OMNI:VCA0719; match to protein family HMM PF02518 YP_270277.1 identified by similarity to OMNI:VCA0720; match to protein family HMM PF02830 YP_270278.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270279.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270281.1 identified by similarity to SP:P14407; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_270282.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_270283.1 identified by match to protein family HMM PF00293 YP_270285.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_270286.1 identified by similarity to GP:28809398 YP_270288.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_270289.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_270290.1 identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_270291.1 identified by match to protein family HMM PF01925 YP_270292.1 identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_270293.1 hydrolyzes diadenosine polyphosphate YP_270294.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_270295.1 identified by match to protein family HMM PF01263 YP_270296.1 identified by similarity to OMNI:SO0428; match to protein family HMM PF01734 YP_270297.1 identified by match to protein family HMM PF01979 YP_270298.1 identified by match to protein family HMM PF01979 YP_270299.1 identified by similarity to OMNI:VC1216; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481 YP_270300.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_270301.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_270302.1 identified by similarity to GP:28808715 YP_270304.1 identified by similarity to SP:P39159; match to protein family HMM PF00639 YP_270305.1 identified by match to protein family HMM PF01384 YP_270306.1 identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153 YP_270307.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon YP_270308.1 identified by similarity to SP:P07655; match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_270309.1 identified by similarity to GP:1369911; match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_270310.1 identified by similarity to GP:28809862; match to protein family HMM PF00528 YP_270311.1 identified by similarity to SP:Q57664; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_270312.1 identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_270313.1 identified by match to protein family HMM PF02563 YP_270315.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_270316.1 identified by match to protein family HMM PF01812 YP_270317.1 identified by similarity to SP:Q46918; match to protein family HMM PF00849 YP_270318.1 identified by similarity to OMNI:SO1619 YP_270319.1 identified by similarity to GP:27361348 YP_270320.1 identified by similarity to GP:28807323 YP_270321.1 identified by similarity to OMNI:SO0362 YP_270323.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_270324.1 identified by match to protein family HMM PF00300 YP_270325.1 identified by similarity to SP:P29931; match to protein family HMM PF02283 YP_270326.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_270327.1 identified by similarity to GP:28373433; match to protein family HMM PF02277 YP_270329.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_270330.1 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_270331.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_270332.1 identified by match to protein family HMM PF01089; match to protein family HMM TIGR00112 YP_270333.1 identified by match to protein family HMM PF02325 YP_270334.1 identified by similarity to OMNI:SO3357 YP_270335.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_270336.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_270337.1 identified by match to protein family HMM PF00383 YP_270338.1 identified by match to protein family HMM PF00069 YP_270339.1 identified by match to protein family HMM PF00481 YP_270342.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_270343.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_270344.1 identified by match to protein family HMM PF00881 YP_270345.1 identified by similarity to OMNI:SO1588 YP_270346.1 identified by similarity to OMNI:NTL01XA4203 YP_270347.1 identified by match to protein family HMM PF00849 YP_270348.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_270350.1 identified by similarity to OMNI:NTL02SP1756; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_270352.1 identified by similarity to OMNI:SO0826; match to protein family HMM PF03961 YP_270353.1 identified by similarity to GP:12382240 YP_270354.1 identified by similarity to SP:Q16134; match to protein family HMM PF05187 YP_270355.1 identified by match to protein family HMM PF01012 YP_270356.1 identified by match to protein family HMM PF00766 YP_270357.1 identified by match to protein family HMM PF01253 YP_270358.1 identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_270360.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_270363.1 identified by match to protein family HMM TIGR01313 YP_270365.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_270366.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_270367.1 identified by similarity to GP:1710898 YP_270368.1 identified by similarity to GP:1710898; match to protein family HMM PF04820 YP_270369.1 identified by similarity to OMNI:NTL01LM2153 YP_270372.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272 YP_270373.1 identified by similarity to SP:P12614; match to protein family HMM PF00232 YP_270374.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_270375.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_270376.1 identified by similarity to SP:P03024; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_270377.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_270378.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_270379.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_270381.1 identified by match to protein family HMM PF02055 YP_270383.1 identified by match to protein family HMM PF00722; match to protein family HMM PF02018; match to protein family HMM PF02412 YP_270385.1 identified by match to protein family HMM PF00072 YP_270386.1 identified by similarity to SP:P33357; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_270389.1 identified by similarity to GP:27359243 YP_270390.1 identified by similarity to SP:P45798; match to protein family HMM PF00722 YP_270392.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_270393.1 identified by similarity to SP:P23903; match to protein family HMM PF00722 YP_270394.1 identified by match to protein family HMM PF00106 YP_270395.1 identified by match to protein family HMM PF00903 YP_270396.1 identified by match to protein family HMM PF01522 YP_270399.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_270401.1 identified by similarity to GP:1710898; match to protein family HMM PF04820 YP_270404.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_270405.1 identified by match to protein family HMM PF07690 YP_270406.1 identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_270407.1 identified by similarity to GP:43409; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_270410.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_270411.1 The +1 reading frame of the dnaX gene produces the tau subunit. A -1 programmed frameshift at the slippery site AAAAAGTCCAGTGA results in a premature stop and generates the gamma subunit; identified by similarity to SP:P06710; match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_270412.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_270414.1 identified by match to protein family HMM PF00072 YP_270416.1 identified by similarity to OMNI:NTL02EC2897; match to protein family HMM PF07308 YP_270418.1 identified by match to protein family HMM PF00515 YP_270419.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_270420.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472 YP_270421.1 identified by match to protein family HMM PF01618 YP_270422.1 identified by match to protein family HMM PF01618 YP_270423.1 identified by similarity to OMNI:SO1824 YP_270424.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270425.1 identified by similarity to SP:P23862 YP_270426.1 identified by similarity to OMNI:SO1814 YP_270427.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270428.1 identified by similarity to OMNI:SO4365 YP_270429.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_270430.1 identified by match to protein family HMM PF01557 YP_270431.1 identified by similarity to SP:P07604; match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR01199 YP_270432.1 identified by match to protein family HMM PF01329 YP_270433.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_270435.1 identified by match to protein family HMM TIGR01620 YP_270436.1 identified by similarity to GP:10719748; match to protein family HMM PF04317 YP_270437.1 identified by similarity to SP:P23855; match to protein family HMM PF04024 YP_270438.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding YP_270439.1 identified by similarity to SP:P23853; match to protein family HMM PF04012 YP_270441.1 identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_270442.1 identified by similarity to SP:P36634; match to protein family HMM PF00496 YP_270443.1 identified by similarity to SP:P36668; match to protein family HMM PF00528 YP_270444.1 identified by similarity to SP:P36669; match to protein family HMM PF00528 YP_270445.1 identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_270446.1 identified by similarity to SP:P36638; match to protein family HMM PF00005 YP_270447.1 identified by similarity to SP:P77241; match to protein family HMM PF00639 YP_270448.1 identified by similarity to SP:P02341; match to protein family HMM PF00216 YP_270450.1 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_270451.1 binds and unfolds substrates as part of the ClpXP protease YP_270452.1 identified by similarity to SP:P19245; match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_270453.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_270454.1 identified by similarity to SP:P24186; match to protein family HMM PF00763; match to protein family HMM PF02882 YP_270455.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_270456.1 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_270457.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01854 YP_270458.1 identified by similarity to SP:Q08015; match to protein family HMM PF06175 YP_270461.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_270462.1 identified by similarity to SP:P08550; match to protein family HMM PF02674 YP_270463.1 identified by similarity to SP:P09549; match to protein family HMM PF05036 YP_270464.1 identified by similarity to SP:P08192; match to protein family HMM TIGR01499 YP_270465.1 identified by similarity to SP:P08193; match to protein family HMM TIGR00515 YP_270466.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_270467.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270468.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_270469.1 identified by similarity to SP:P05459; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_270470.1 identified by similarity to SP:P14926; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_270471.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05430 YP_270473.1 identified by similarity to GP:28807191 YP_270474.1 identified by match to protein family HMM PF01513 YP_270475.1 identified by similarity to OMNI:VC2113 YP_270476.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_270477.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_270478.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_270479.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_270480.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_270481.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_270482.1 identified by match to protein family HMM PF01037 YP_270483.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349 YP_270484.1 identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_270486.1 identified by similarity to SP:P09372; match to protein family HMM PF01025 YP_270487.1 identified by match to protein family HMM PF01513 YP_270488.1 identified by match to protein family HMM TIGR00634 YP_270489.1 identified by match to protein family HMM PF04355 YP_270490.1 identified by similarity to GP:28805632; match to protein family HMM PF03658 YP_270491.1 identified by match to protein family HMM PF03364 YP_270492.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_270493.1 identified by similarity to OMNI:SO2929 YP_270495.1 identified by similarity to GP:28806291 YP_270496.1 identified by similarity to SP:Q02522 YP_270499.1 identified by match to protein family HMM PF01654 YP_270500.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_270501.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_270503.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_270504.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_270505.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_270506.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_270507.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_270508.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_270509.1 identified by match to protein family HMM PF00267 YP_270510.1 identified by match to protein family HMM PF00254 YP_270514.1 identified by similarity to SP:O05404; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_270515.1 identified by similarity to SP:P12311; match to protein family HMM PF00107 YP_270516.1 identified by similarity to OMNI:SO1412 YP_270518.1 identified by match to protein family HMM PF01925 YP_270520.1 identified by match to protein family HMM PF01042 YP_270522.1 identified by match to protein family HMM PF02028 YP_270523.1 identified by match to protein family HMM PF01244 YP_270524.1 identified by match to protein family HMM PF00171 YP_270525.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270526.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_270529.1 identified by similarity to OMNI:PP2691 YP_270531.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_270532.1 identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701 YP_270533.1 identified by similarity to OMNI:NTL01SS00228; match to protein family HMM PF00512; match to protein family HMM PF03924 YP_270534.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_270535.1 catalyzes the formation of 4-phosphoerythronate from D-erythrose 4-phosphate YP_270536.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_270538.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_270539.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270541.1 identified by similarity to SP:P39174 YP_270545.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_270546.1 identified by similarity to OMNI:SO1227 YP_270547.1 identified by match to protein family HMM PF01842 YP_270548.1 identified by similarity to SP:P54394 YP_270551.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_270552.1 identified by similarity to SP:P10370; match to protein family HMM PF00815; match to protein family HMM TIGR00069 YP_270553.1 identified by similarity to SP:P10369; match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_270554.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_270555.1 identified by similarity to SP:P44340; match to protein family HMM PF00117; match to protein family HMM TIGR01855 YP_270556.1 identified by similarity to SP:P10371; match to protein family HMM PF00977; match to protein family HMM TIGR00007 YP_270557.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_270558.1 identified by similarity to SP:P06989; match to protein family HMM PF01502; match to protein family HMM PF01503 YP_270559.1 identified by similarity to GP:27359311 YP_270561.1 identified by match to protein family HMM PF00583 YP_270562.1 identified by similarity to GB:CAA82801.1; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 YP_270563.1 molecular chaperone YP_270567.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225 YP_270570.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270571.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_270572.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_270573.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA YP_270574.1 identified by match to protein family HMM PF03696 YP_270575.1 identified by similarity to SP:P05826; match to protein family HMM PF00543 YP_270576.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_270577.1 identified by similarity to OMNI:SO3520; match to protein family HMM TIGR02532 YP_270578.1 identified by match to protein family HMM PF00076 YP_270579.1 identified by similarity to SP:Q05354 YP_270580.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270581.1 identified by similarity to SP:P77334; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_270582.1 identified by similarity to OMNI:SO0141; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_270583.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_270584.1 identified by match to protein family HMM PF00873 YP_270585.1 identified by match to protein family HMM TIGR01730 YP_270587.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229 YP_270588.1 identified by similarity to SP:P08732; match to protein family HMM PF01292 YP_270589.1 identified by similarity to OMNI:PSPTO1001 YP_270590.1 identified by similarity to GP:28738; match to protein family HMM PF00245 YP_270591.1 identified by similarity to GP:28738; match to protein family HMM PF00245 YP_270593.1 identified by match to protein family HMM PF00392 YP_270594.1 identified by match to protein family HMM PF00583 YP_270595.1 identified by similarity to OMNI:NTL03PA04182 YP_270596.1 identified by similarity to OMNI:SO3298 YP_270597.1 identified by similarity to SP:O05617; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF01243 YP_270598.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; match to protein family HMM TIGR01926 YP_270599.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270601.1 identified by similarity to OMNI:BR0558 YP_270603.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270608.1 identified by similarity to OMNI:SO0545; match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270609.1 identified by match to protein family HMM PF00072 YP_270610.1 identified by similarity to OMNI:SO0544; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03924 YP_270611.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_270612.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_270613.1 identified by similarity to SP:P27550; match to protein family HMM PF00501; match to protein family HMM TIGR02188 YP_270615.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270616.1 identified by similarity to SP:P23485; match to protein family HMM PF04773 YP_270617.1 identified by similarity to SP:Q06198; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_270618.1 identified by similarity to SP:P49008; match to protein family HMM PF00728; match to protein family HMM PF02838 YP_270619.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270622.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_270623.1 identified by similarity to GP:4761129 YP_270624.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646 YP_270625.1 identified by similarity to OMNI:NTL02LI2298 YP_270626.1 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02073 YP_270627.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703 YP_270630.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_270631.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472 YP_270632.1 identified by match to protein family HMM PF01618 YP_270633.1 identified by match to protein family HMM PF01618 YP_270634.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27360409 YP_270635.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270636.1 identified by match to protein family HMM PF00724 YP_270638.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_270639.1 identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_270640.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_270642.1 identified by match to protein family HMM PF00691 YP_270645.1 identified by match to protein family HMM PF00149 YP_270646.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_270648.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270649.1 identified by match to protein family HMM PF00165 YP_270650.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL01NS3189; match to protein family HMM PF02586 YP_270651.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270653.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_270654.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_270655.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27358518 YP_270659.1 identified by similarity to GP:4106643; match to protein family HMM PF07676 YP_270660.1 identified by similarity to OMNI:NTL01XC3898; match to protein family HMM PF07676 YP_270661.1 identified by similarity to SP:P09185; match to protein family HMM PF00892 YP_270662.1 identified by similarity to GP:29605081; match to protein family HMM PF00440 YP_270663.1 identified by match to protein family HMM PF01738 YP_270664.1 identified by similarity to OMNI:SO3298 YP_270665.1 identified by match to protein family HMM PF01047 YP_270666.1 identified by similarity to OMNI:SO0547; match to protein family HMM TIGR02001 YP_270668.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_270669.1 catalyzes the formation of betaine from betaine aldehyde YP_270670.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_270671.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_270672.1 identified by similarity to OMNI:PP0313 YP_270673.1 identified by match to protein family HMM PF00766 YP_270674.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_270675.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992 YP_270676.1 identified by similarity to OMNI:NTL03PA05398 YP_270677.1 identified by match to protein family HMM PF01244 YP_270679.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_270680.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor YP_270681.1 identified by similarity to GP:3724144; match to protein family HMM PF01512 YP_270682.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_270683.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_270685.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_270687.1 identified by match to protein family HMM PF00355 YP_270688.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_270689.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_270690.1 identified by match to protein family HMM TIGR01373 YP_270691.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374 YP_270692.1 identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_270693.1 identified by similarity to SP:Q46338; match to protein family HMM PF04268 YP_270694.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_270695.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_270697.1 identified by similarity to SP:P46154; match to protein family HMM PF00107 YP_270698.1 identified by similarity to SP:Q59765; match to protein family HMM PF02233 YP_270699.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_270700.1 identified by similarity to GP:927438; match to protein family HMM PF00296 YP_270701.1 identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915 YP_270702.1 identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916 YP_270703.1 identified by similarity to OMNI:NTL01MT00610; match to protein family HMM PF01983 YP_270704.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) YP_270705.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_270706.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis along with cofH YP_270707.1 identified by match to protein family HMM PF00892 YP_270708.1 identified by match to protein family HMM PF00892 YP_270709.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270710.1 identified by similarity to OMNI:PSPTO3671 YP_270711.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_270712.1 identified by match to protein family HMM PF02133 YP_270714.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_270715.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_270716.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_270717.1 identified by match to protein family HMM PF00440 YP_270718.1 identified by similarity to OMNI:EF0115 YP_270721.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_270722.1 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_270723.1 Essential for efficient processing of 16S rRNA YP_270724.1 identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_270726.1 identified by similarity to OMNI:NTL03PA01728; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270728.1 identified by similarity to SP:P07019; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_270729.1 identified by match to protein family HMM PF03773 YP_270730.1 identified by match to protein family HMM PF01578 YP_270731.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_270733.1 identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434 YP_270734.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_270735.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR01621 YP_270736.1 identified by match to protein family HMM PF00209 YP_270737.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_270738.1 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_270739.1 identified by similarity to OMNI:CC2160; match to protein family HMM TIGR01841 YP_270740.1 identified by match to protein family HMM TIGR01841 YP_270741.1 identified by match to protein family HMM TIGR01841 YP_270742.1 identified by match to protein family HMM PF07879 YP_270743.1 identified by similarity to SP:O66392; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_270745.1 identified by similarity to GP:3641686; match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_270746.1 identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963 YP_270747.1 identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_270748.1 identified by match to protein family HMM PF03649 YP_270749.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_270750.1 identified by similarity to SP:P21892 YP_270751.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic YP_270752.2 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_270754.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_270757.1 identified by similarity to GP:28805487; match to protein family HMM PF03883 YP_270759.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_270760.1 identified by similarity to OMNI:NTL03PA01622 YP_270761.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_270763.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_270766.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:VC1052; match to protein family HMM PF04304 YP_270768.1 identified by match to protein family HMM PF00588 YP_270769.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_270770.1 identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_270771.1 identified by similarity to SP:P55135; match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_270772.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system YP_270774.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_270775.1 identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613 YP_270776.1 identified by similarity to SP:P06616; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650 YP_270777.1 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_270778.1 identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_270779.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_270781.1 identified by similarity to SP:P46187; match to protein family HMM PF04246 YP_270782.1 identified by similarity to SP:P46186; match to protein family HMM PF03888 YP_270783.1 identified by similarity to SP:P38106; match to protein family HMM PF03872 YP_270784.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_270785.1 catalyzes the formation of oxaloacetate from L-aspartate YP_270786.1 identified by match to protein family HMM PF03937 YP_270787.1 identified by match to protein family HMM PF01571 YP_270788.1 identified by similarity to SP:P30856; match to protein family HMM PF00254 YP_270789.1 identified by similarity to SP:P45383; match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_270790.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_270791.1 identified by match to protein family HMM PF01810 YP_270792.1 This protein performs the mismatch recognition step during the DNA repair process YP_270794.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL03ST1482; match to protein family HMM PF06945 YP_270795.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_270796.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_270797.1 identified by match to protein family HMM PF00089 YP_270800.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 YP_270801.1 identified by similarity to OMNI:NTL02EC3797; match to protein family HMM PF04320 YP_270802.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_270803.1 identified by similarity to OMNI:SO3369; match to protein family HMM PF04362 YP_270805.1 identified by match to protein family HMM PF00106 YP_270806.1 identified by match to protein family HMM PF00165 YP_270807.1 identified by match to protein family HMM PF00106 YP_270808.1 identified by similarity to SP:Q06475; match to protein family HMM PF00510 YP_270810.1 identified by similarity to GP:11071578 YP_270812.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270815.1 identified by similarity to SP:P27303; similarity to SP:P32716; match to protein family HMM PF00529 YP_270816.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_270817.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_270818.1 identified by match to protein family HMM PF00072 YP_270819.1 identified by match to protein family HMM PF00375 YP_270820.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270821.1 identified by similarity to GP:28808149; match to protein family HMM PF01709 YP_270822.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_270823.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270824.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270826.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270827.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_270828.1 identified by similarity to OMNI:SO3900; match to protein family HMM PF05728 YP_270829.1 identified by similarity to SP:P44685; match to protein family HMM PF00149 YP_270830.1 identified by similarity to OMNI:NTL03ST2966 YP_270831.1 identified by similarity to SP:P36651; match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_270832.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell YP_270833.1 identified by similarity to SP:Q9R9N2; match to protein family HMM PF00534 YP_270834.1 identified by similarity to SP:P24187; match to protein family HMM PF03279; match to protein family HMM TIGR02207 YP_270836.1 identified by similarity to SP:P30870; match to protein family HMM PF03710 YP_270840.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_270841.1 identified by similarity to OMNI:SO3764 YP_270842.1 identified by match to protein family HMM PF04012 YP_270843.1 identified by similarity to OMNI:SO3766 YP_270844.1 identified by similarity to OMNI:SO3767 YP_270845.1 identified by similarity to SP:P02940 YP_270846.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734 YP_270847.1 identified by match to protein family HMM PF01928 YP_270848.1 identified by similarity to GP:27360197 YP_270849.1 identified by similarity to GP:4808595; match to protein family HMM PF01531 YP_270850.1 identified by similarity to SP:P32054; match to protein family HMM PF01370; match to protein family HMM TIGR01472 YP_270851.1 identified by similarity to GP:18266408 YP_270852.1 identified by similarity to GP:11464539; match to protein family HMM PF01041 YP_270853.1 identified by match to protein family HMM PF00534 YP_270855.1 identified by similarity to SP:P27623; match to protein family HMM PF01467; match to protein family HMM TIGR00125 YP_270856.1 identified by match to protein family HMM PF04464 YP_270858.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_270859.1 identified by similarity to SP:P37412; match to protein family HMM PF00180; match to protein family HMM TIGR00169 YP_270860.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_270861.1 identified by similarity to SP:P30126; match to protein family HMM PF00694; match to protein family HMM TIGR00171 YP_270862.1 identified by similarity to SP:P45754 YP_270863.1 identified by similarity to SP:P14542; match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270865.1 identified by similarity to SP:P06961; match to protein family HMM PF01743; match to protein family HMM PF01966 YP_270867.1 identified by match to protein family HMM PF03171 YP_270868.1 identified by similarity to GP:28808750 YP_270869.1 identified by similarity to SP:P24038; match to protein family HMM PF03264 YP_270870.1 identified by similarity to SP:P24040; match to protein family HMM PF00034; match to protein family HMM PF02239 YP_270871.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_270872.1 identified by similarity to SP:Q51479 YP_270873.1 identified by similarity to SP:Q51480; match to protein family HMM PF02239 YP_270874.1 identified by similarity to OMNI:NTL03PA00515 YP_270875.1 identified by similarity to SP:Q52522 YP_270876.1 identified by similarity to SP:Q52525 YP_270877.1 identified by similarity to OMNI:NTL03PA00512; match to protein family HMM PF04055 YP_270878.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_270879.1 identified by similarity to OMNI:NTL03PA00510; match to protein family HMM PF00034; match to protein family HMM PF02239 YP_270881.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_270883.1 identified by match to protein family HMM PF01040 YP_270884.1 identified by similarity to OMNI:NTL02LI0129; match to protein family HMM PF05960 YP_270885.1 identified by match to protein family HMM PF00892 YP_270886.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_270887.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_270888.1 identified by similarity to GP:27352404; match to protein family HMM PF02696 YP_270889.1 identified by similarity to OMNI:NTL03PA03855 YP_270890.1 identified by match to protein family HMM PF01042 YP_270891.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_270892.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_270894.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_270895.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270896.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270897.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_270899.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis YP_270900.1 identified by similarity to OMNI:SO3310 YP_270901.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_270902.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_270903.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270904.1 identified by similarity to GP:1162960; match to protein family HMM PF00515; match to protein family HMM PF01476; match to protein family HMM TIGR02521 YP_270905.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_270906.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_270909.1 identified by match to protein family HMM PF00501 YP_270910.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_270911.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_270912.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_270913.1 identified by similarity to OMNI:SO2271; match to protein family HMM PF04384 YP_270914.1 identified by match to protein family HMM PF01037 YP_270916.1 identified by similarity to OMNI:NTL01YP2107 YP_270917.1 identified by similarity to SP:P24171; match to protein family HMM PF01432 YP_270920.1 identified by similarity to SP:P52101; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_270922.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_270925.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719 YP_270926.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_270928.1 identified by similarity to SP:Q53547; match to protein family HMM PF02230 YP_270929.1 identified by similarity to GP:28809924; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_270931.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_270933.1 identified by match to protein family HMM PF05940 YP_270934.1 identified by similarity to SP:Q59516; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_270935.1 identified by match to protein family HMM PF00583 YP_270938.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_270939.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_270940.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_270941.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_270942.1 identified by match to protein family HMM TIGR02077 YP_270943.1 identified by similarity to OMNI:SO0569; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_270944.1 identified by similarity to SP:P40403 YP_270945.1 identified by similarity to SP:P24072; match to protein family HMM PF00072 YP_270947.1 identified by similarity to OMNI:SO0379; match to protein family HMM PF01863 YP_270948.1 identified by similarity to OMNI:NTL01YP1678 YP_270951.1 identified by similarity to SP:P02919; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02071 YP_270952.1 identified by similarity to SP:P37024; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 YP_270955.1 identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230 YP_270956.1 identified by similarity to SP:P18274; match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_270957.1 identified by match to protein family HMM PF00749 YP_270958.1 identified by match to protein family HMM PF00106 YP_270959.1 identified by similarity to OMNI:SO0140 YP_270960.1 identified by similarity to SP:P13685; match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_270961.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_270962.1 identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222 YP_270963.1 identified by match to protein family HMM PF02569; match to protein family HMM TIGR00018 YP_270964.1 identified by match to protein family HMM PF00583 YP_270965.1 identified by match to protein family HMM PF03253 YP_270966.1 identified by similarity to OMNI:NTL01OI2236 YP_270968.1 identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_270969.1 identified by similarity to SP:P25532; match to protein family HMM PF00156; match to protein family HMM TIGR01091 YP_270970.1 identified by match to protein family HMM PF01564 YP_270972.1 identified by similarity to SP:P75757; match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_270973.1 identified by similarity to OMNI:NTL03PA01299; match to protein family HMM PF02583 YP_270974.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_270975.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_270976.1 identified by match to protein family HMM PF02321 YP_270977.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_270978.1 identified by match to protein family HMM PF00028 YP_270982.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_270983.1 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393 YP_270984.1 identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_270985.1 identified by match to protein family HMM PF02637 YP_270986.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_270987.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_270988.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_270989.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_270990.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_270991.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_270992.1 identified by match to protein family HMM PF00085 YP_270993.1 identified by match to protein family HMM PF03969 YP_270994.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF06295 YP_270995.1 identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_270996.1 identified by similarity to SP:P31137; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_270997.1 identified by similarity to SP:P32557; match to protein family HMM PF01323 YP_270998.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_270999.1 identified by match to protein family HMM PF00037 YP_271001.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_271002.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_271004.1 identified by match to protein family HMM PF00462; match to protein family HMM PF00578 YP_271005.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO2827 YP_271006.1 identified by similarity to SP:Q46339; match to protein family HMM PF00551; match to protein family HMM TIGR00655 YP_271007.1 identified by match to protein family HMM PF00903 YP_271008.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271009.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_271010.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_271011.1 identified by similarity to OMNI:SO3842 YP_271012.1 identified by similarity to OMNI:SO3841 YP_271013.1 identified by similarity to SP:Q06198; match to protein family HMM PF04542 YP_271014.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_271015.1 identified by similarity to SP:P17888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595 YP_271016.1 identified by similarity to SP:P29131; match to protein family HMM PF05036 YP_271018.1 heat shock protein involved in degradation of misfolded proteins YP_271019.1 heat shock protein involved in degradation of misfolded proteins YP_271020.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_271021.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271022.1 identified by similarity to GP:27354141; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_271023.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_271024.1 identified by similarity to GP:27358554; match to protein family HMM PF00563; match to protein family HMM PF00990 YP_271027.1 identified by similarity to OMNI:SO4732; match to protein family HMM PF05960 YP_271028.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_271029.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_271030.1 identified by similarity to SP:P10740; match to protein family HMM PF02666; match to protein family HMM TIGR00163 YP_271031.1 identified by similarity to SP:P18415 YP_271032.1 identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352 YP_271033.1 identified by similarity to SP:P07000; match to protein family HMM PF00561 YP_271034.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_271035.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_271036.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_271037.1 identified by similarity to SP:P15040; match to protein family HMM PF02556; match to protein family HMM TIGR00809 YP_271038.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_271039.1 identified by match to protein family HMM PF00581 YP_271040.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_271041.1 identified by match to protein family HMM PF01551 YP_271042.1 identified by similarity to OMNI:SO0046; match to protein family HMM PF04748 YP_271043.1 identified by match to protein family HMM PF00089 YP_271044.1 identified by match to protein family HMM PF00278 YP_271046.1 identified by match to protein family HMM PF01565 YP_271047.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_271048.1 identified by similarity to OMNI:SO1718 YP_271049.1 identified by match to protein family HMM PF00472 YP_271050.1 identified by match to protein family HMM PF01541 YP_271051.1 identified by similarity to OMNI:SO4011 YP_271053.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_271054.1 identified by similarity to GP:28806175 YP_271055.1 identified by similarity to SP:P45320; match to protein family HMM PF00209 YP_271056.1 identified by similarity to OMNI:VCA0034 YP_271057.1 identified by similarity to SP:Q44333; match to protein family HMM PF01037 YP_271059.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_271060.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_271062.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_271064.1 identified by match to protein family HMM TIGR01730 YP_271065.1 identified by match to protein family HMM PF00005 YP_271066.1 identified by similarity to PIR:AG0166; match to protein family HMM PF02687 YP_271067.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_271068.1 identified by similarity to GP:29338778; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_271069.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_271071.1 identified by similarity to SP:P42251 YP_271072.1 identified by match to protein family HMM PF00583 YP_271073.1 identified by similarity to OMNI:NTL02ML3419; match to protein family HMM PF07484 YP_271074.1 identified by match to protein family HMM TIGR01409 YP_271077.1 identified by similarity to OMNI:SO0180 YP_271078.1 identified by match to protein family HMM PF05118 YP_271079.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_271080.1 identified by similarity to OMNI:VC0581 YP_271081.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_271082.1 identified by similarity to SP:P51001; match to protein family HMM PF01380; match to protein family HMM TIGR00441 YP_271083.1 identified by match to protein family HMM PF04972 YP_271084.1 identified by similarity to SP:P25663; match to protein family HMM PF04386 YP_271085.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation YP_271086.1 identified by similarity to SP:O31216; match to protein family HMM PF02167 YP_271087.1 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033 YP_271088.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 YP_271090.1 identified by similarity to SP:P02363; match to protein family HMM PF00380 YP_271091.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_271092.1 identified by similarity to GP:4098982; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271094.1 identified by similarity to OMNI:NTL01RS2966; match to protein family HMM PF07605 YP_271095.1 identified by similarity to GP:151065; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538 YP_271096.1 identified by similarity to GP:151066; match to protein family HMM PF00482 YP_271097.1 identified by similarity to SP:P45794; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_271098.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_271099.1 identified by similarity to OMNI:NTL01YP3227; match to protein family HMM PF07072 YP_271100.1 identified by similarity to PIR:B64161; match to protein family HMM PF03884 YP_271101.1 identified by similarity to SP:P08337; match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_271102.1 identified by similarity to SP:P10408; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 YP_271103.1 identified by match to protein family HMM PF01551 YP_271105.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_271107.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_271108.1 identified by similarity to OMNI:NTL01PH00004 YP_271109.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_271110.1 identified by similarity to SP:P06136; match to protein family HMM PF03799 YP_271111.1 identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205 YP_271112.1 identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 YP_271113.1 identified by similarity to SP:P17443; match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133 YP_271114.1 identified by similarity to SP:P16457; match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_271115.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 YP_271116.1 identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_271117.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_271118.1 identified by similarity to SP:P22188; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 YP_271119.1 identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_271120.1 identified by similarity to SP:P22187; match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_271121.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_271122.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_271124.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_271127.1 identified by similarity to GP:6648543; match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_271129.1 identified by similarity to OMNI:NTL01SS01420; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00515; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF07719 YP_271131.1 identified by match to protein family HMM PF00873 YP_271132.1 identified by similarity to SP:P43505; match to protein family HMM TIGR01730 YP_271135.1 identified by similarity to OMNI:SO1868 YP_271136.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_271138.1 identified by similarity to OMNI:VCA0738 YP_271139.1 identified by similarity to OMNI:SO3985; match to protein family HMM PF04952 YP_271140.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_271141.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_271142.1 identified by similarity to SP:P39406; match to protein family HMM PF05175 YP_271143.1 identified by similarity to GP:27358467; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_271144.1 identified by similarity to SP:P03026; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_271145.1 identified by similarity to SP:P22763; match to protein family HMM PF01627 YP_271146.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_271149.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_271150.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_271153.1 identified by similarity to SP:P00379; match to protein family HMM PF00186 YP_271154.1 identified by similarity to SP:P22520; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_271157.1 identified by similarity to SP:P22519 YP_271158.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_271159.1 involved in the peptidyltransferase reaction during translation YP_271160.1 identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_271161.1 identified by similarity to SP:P19641; match to protein family HMM PF00348 YP_271162.1 oxidizes malate to oxaloacetate YP_271163.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_271164.1 identified by similarity to OMNI:SO0577; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_271166.1 identified by match to protein family HMM PF02562 YP_271167.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_271168.1 identified by similarity to SP:P39219; match to protein family HMM PF00849 YP_271170.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_271171.1 identified by similarity to SP:P31554; match to protein family HMM PF04453 YP_271172.1 identified by similarity to SP:P21202; match to protein family HMM PF00639 YP_271173.1 identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557 YP_271174.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_271175.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_271176.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271177.1 identified by similarity to SP:P36997; match to protein family HMM PF00313 YP_271178.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072 YP_271179.1 identified by match to protein family HMM PF01722 YP_271180.1 identified by match to protein family HMM PF01740 YP_271181.1 identified by match to protein family HMM PF05494 YP_271182.1 identified by match to protein family HMM PF02470 YP_271183.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_271184.1 identified by match to protein family HMM PF00005 YP_271185.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_271186.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_271187.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis YP_271188.1 identified by similarity to OMNI:SO3958; match to protein family HMM PF06835 YP_271189.1 identified by match to protein family HMM PF03968 YP_271190.1 identified by match to protein family HMM PF00005 YP_271191.1 identified by similarity to SP:Q9S0L2; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395 YP_271192.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_271193.1 identified by similarity to SP:P31222; match to protein family HMM PF00359 YP_271194.1 identified by similarity to OMNI:NTL01ST3228; match to protein family HMM PF03668 YP_271195.1 identified by similarity to SP:P33996; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_271197.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_271199.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_271200.1 identified by similarity to OMNI:NTL02YP0170 YP_271201.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_271202.1 identified by match to protein family HMM PF00795 YP_271203.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO4093; match to protein family HMM TIGR02099 YP_271204.1 involved in the processing of the 5'end of 16S rRNA YP_271205.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_271206.1 identified by similarity to SP:P16927; match to protein family HMM PF04093 YP_271207.1 identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219 YP_271209.1 functions in MreBCD complex in some organisms YP_271211.1 identified by similarity to OMNI:SO4101 YP_271214.1 identified by similarity to OMNI:VC0412; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271215.1 identified by similarity to OMNI:SO4103; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271216.1 identified by similarity to OMNI:VC0410; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271217.1 identified by similarity to OMNI:SO4105; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271218.1 identified by similarity to OMNI:SO4106; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_271220.1 identified by similarity to OMNI:VC0406; match to protein family HMM PF00482 YP_271221.1 identified by similarity to OMNI:SO4109; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_271222.1 identified by similarity to OMNI:VC0404 YP_271223.1 identified by similarity to OMNI:VC0403 YP_271224.1 identified by similarity to OMNI:VC0402; match to protein family HMM PF00263; match to protein family HMM TIGR02519 YP_271226.1 identified by similarity to GP:27360964 YP_271227.1 identified by similarity to SP:P76316 YP_271228.1 identified by match to protein family HMM PF01203 YP_271229.1 identified by match to protein family HMM PF04612 YP_271230.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_271231.1 identified by similarity to GP:4139244; match to protein family HMM PF03934 YP_271232.1 identified by similarity to SP:Q00517; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532 YP_271233.1 identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_271234.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_271235.1 identified by similarity to GP:4139240; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_271236.1 identified by similarity to GP:4139238; match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_271237.1 identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_271238.1 identified by similarity to SP:P31780; similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_271239.1 identified by similarity to GP:609624; match to protein family HMM TIGR01713 YP_271240.1 identified by similarity to SP:P45802; match to protein family HMM PF01479 YP_271241.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_271242.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_271243.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR YP_271244.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_271246.1 identified by similarity to SP:P43221 YP_271248.1 identified by similarity to OMNI:NTL01RS0610 YP_271249.1 identified by similarity to SP:O67300 YP_271250.1 identified by match to protein family HMM PF00924 YP_271251.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_271252.1 identified by match to protein family HMM PF00903 YP_271254.1 identified by match to protein family HMM PF07885 YP_271255.1 identified by similarity to GP:28809985; match to protein family HMM PF01594 YP_271256.1 identified by similarity to GP:3426176; match to protein family HMM PF00933 YP_271257.1 identified by similarity to SP:P26428; match to protein family HMM PF01965 YP_271258.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_271259.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_271260.1 identified by match to protein family HMM PF00892 YP_271261.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_271263.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_271264.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_271265.1 identified by similarity to GP:507737 YP_271266.1 identified by match to protein family HMM PF01966 YP_271267.1 identified by match to protein family HMM PF00873 YP_271268.1 identified by match to protein family HMM TIGR01730 YP_271269.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_271270.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_271271.1 identified by match to protein family HMM PF00654 YP_271272.1 identified by match to protein family HMM PF03653 YP_271274.1 identified by match to protein family HMM PF00089; match to protein family HMM PF02225 YP_271275.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate YP_271276.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_271279.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_271280.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_271281.1 identified by similarity to OMNI:NTL01XC1971 YP_271282.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_271283.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_271284.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_271285.1 identified by match to protein family HMM PF02391 YP_271286.1 identified by similarity to SP:P37734; match to protein family HMM TIGR01256 YP_271287.1 identified by similarity to SP:P37731; match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_271288.1 identified by similarity to SP:P37732; match to protein family HMM PF00005; match to protein family HMM TIGR02142 YP_271289.1 identified by similarity to SP:P30138; match to protein family HMM PF00899; match to protein family HMM PF05237 YP_271290.1 identified by similarity to OMNI:NTL03PA02954; match to protein family HMM PF06938 YP_271291.1 identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_271293.1 identified by similarity to SP:P77211; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_271294.1 identified by match to protein family HMM TIGR01730 YP_271295.1 identified by match to protein family HMM PF00873 YP_271296.1 identified by match to protein family HMM PF01389 YP_271297.1 identified by match to protein family HMM PF04073 YP_271298.1 identified by similarity to OMNI:NTL01XA1857; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_271299.1 identified by match to protein family HMM PF00165 YP_271301.1 identified by similarity to OMNI:SO3395 YP_271302.1 regulates the synthesis and expression of the dsdXA operon and dadA gene YP_271303.1 catalyzes the formation of pyruvate from serine YP_271304.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate YP_271305.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution YP_271306.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271307.1 identified by match to protein family HMM PF00202 YP_271308.1 identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_271309.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_271310.1 identified by similarity to OMNI:PP0595; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271311.1 identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_271312.1 identified by match to protein family HMM PF02515 YP_271313.1 identified by match to protein family HMM PF00171 YP_271315.1 identified by similarity to SP:P31133; match to protein family HMM PF01547 YP_271316.1 identified by similarity to SP:P31134; match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_271317.1 identified by similarity to SP:P31135; match to protein family HMM PF00528 YP_271318.1 identified by similarity to SP:P31136; match to protein family HMM PF00528 YP_271319.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271320.1 identified by similarity to SP:P37906; match to protein family HMM PF01266 YP_271321.1 identified by match to protein family HMM PF00120 YP_271322.1 identified by similarity to OMNI:SO1267; match to protein family HMM PF07722 YP_271323.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_271324.1 identified by similarity to OMNI:SO3502; match to protein family HMM TIGR02001 YP_271325.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07494; match to protein family HMM PF07495; match to protein family HMM TIGR00254 YP_271328.1 identified by similarity to OMNI:NTL01BH2237; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_271330.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_271331.1 identified by similarity to GP:27358777; match to protein family HMM PF02589 YP_271332.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_271333.1 identified by similarity to GP:27358775; match to protein family HMM PF02754 YP_271334.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_271335.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271336.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271337.1 identified by match to protein family HMM TIGR00778 YP_271338.1 identified by match to protein family HMM PF00165 YP_271339.1 identified by similarity to OMNI:NTL01TT0238; match to protein family HMM PF00072; match to protein family HMM TIGR02481 YP_271340.1 identified by similarity to OMNI:PSPTO0536; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_271342.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_271343.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271344.1 identified by match to protein family HMM PF02687 YP_271345.1 identified by match to protein family HMM PF00005 YP_271346.1 identified by match to protein family HMM TIGR01730 YP_271348.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_271349.1 identified by similarity to SP:P23222; match to protein family HMM PF00989; match to protein family HMM PF02518 YP_271350.1 identified by match to protein family HMM PF00400 YP_271354.1 identified by match to protein family HMM TIGR01777 YP_271355.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271356.1 identified by similarity to OMNI:SO2062 YP_271360.1 identified by similarity to SP:O06465; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_271361.1 identified by similarity to SP:P19479; match to protein family HMM PF00578 YP_271362.1 identified by similarity to SP:P11721; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271363.1 identified by match to protein family HMM PF01810 YP_271366.1 identified by match to protein family HMM PF01112 YP_271367.1 identified by match to protein family HMM PF03553 YP_271369.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_271370.1 identified by match to protein family HMM PF01551 YP_271371.1 identified by similarity to SP:P41256; match to protein family HMM PF00579; match to protein family HMM TIGR00234 YP_271372.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches. YP_271373.1 catalyzes the formation of glutamate from glutamine YP_271375.1 identified by similarity to SP:Q00790; match to protein family HMM PF04205 YP_271376.1 reduces nitrous oxide to nitrogen YP_271377.1 identified by similarity to SP:P19843; match to protein family HMM PF05048 YP_271378.1 identified by similarity to SP:P19844; match to protein family HMM PF00005 YP_271379.1 identified by similarity to SP:P19845 YP_271381.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF07446 YP_271382.1 identified by similarity to OMNI:SO3343 YP_271383.1 identified by similarity to OMNI:SO1836 YP_271384.1 identified by similarity to SP:O25903; match to protein family HMM PF01553 YP_271385.1 identified by match to protein family HMM PF03458 YP_271386.1 identified by match to protein family HMM PF03186 YP_271387.1 identified by similarity to SP:O32028; match to protein family HMM PF01048; match to protein family HMM TIGR01704 YP_271388.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_271389.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_271390.1 identified by match to protein family HMM PF02873; match to protein family HMM TIGR00179 YP_271391.1 identified by match to protein family HMM PF00881 YP_271392.1 identified by match to protein family HMM PF00107 YP_271393.1 identified by match to protein family HMM PF00440 YP_271395.1 identified by similarity to SP:P23853; match to protein family HMM PF04012 YP_271396.1 identified by similarity to SP:P23855; match to protein family HMM PF04024 YP_271398.1 identified by match to protein family HMM PF00378 YP_271399.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by match to protein family HMM PF04314 YP_271400.1 identified by similarity to OMNI:SO3906 YP_271401.1 identified by similarity to OMNI:SO3905 YP_271402.1 identified by match to protein family HMM PF01464 YP_271403.1 identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931 YP_271404.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_271405.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_271406.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_271407.1 identified by match to protein family HMM PF00152; match to protein family HMM TIGR00462 YP_271408.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_271409.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_271410.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_271411.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_271412.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_271413.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_271414.1 identified by similarity to SP:P02392; match to protein family HMM PF00542; match to protein family HMM TIGR00855 YP_271415.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_271416.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_271417.1 binds directly to 23S ribosomal RNA YP_271418.1 identified by match to protein family HMM PF00691 YP_271419.1 identified by match to protein family HMM PF00520 YP_271420.1 identified by match to protein family HMM PF00759; match to protein family HMM PF02927 YP_271421.1 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_271422.1 identified by similarity to SP:P16920; match to protein family HMM PF00584; match to protein family HMM TIGR00964 YP_271423.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_271425.1 identified by similarity to GB:AAC02795.1 YP_271426.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_271427.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_271428.1 identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_271429.1 identified by match to protein family HMM PF00892 YP_271430.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_271431.1 decatenates replicating daughter chromosomes YP_271433.1 identified by similarity to SP:Q54397 YP_271434.1 identified by match to protein family HMM PF01163 YP_271435.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07676 YP_271437.1 identified by match to protein family HMM PF00581 YP_271439.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_271441.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_271443.1 identified by match to protein family HMM TIGR01352 YP_271444.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_271445.1 identified by similarity to SP:P06959; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348 YP_271447.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_271448.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex YP_271449.1 involved in regulation of beta-lactamase; signaling protein YP_271450.1 identified by similarity to GP:14625828; match to protein family HMM PF01510 YP_271451.1 identified by similarity to OMNI:NTL03PA04966; match to protein family HMM TIGR02281 YP_271452.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_271453.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL01XA3765 YP_271456.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_271457.1 identified by similarity to GP:7025917; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_271458.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_271459.1 identified by similarity to OMNI:SO2929 YP_271460.1 identified by similarity to OMNI:SO3326 YP_271461.1 identified by similarity to SP:P22986; match to protein family HMM PF04957 YP_271462.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_271463.1 identified by similarity to OMNI:SO4729 YP_271464.1 identified by similarity to OMNI:SO4728 YP_271466.1 identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189 YP_271467.1 identified by similarity to OMNI:SO1353; match to protein family HMM PF06127 YP_271468.1 identified by match to protein family HMM PF00924 YP_271469.1 identified by match to protein family HMM PF01553 YP_271471.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_271472.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_271473.1 identified by similarity to OMNI:PP3510 YP_271474.1 identified by similarity to SP:P36928 YP_271475.1 identified by similarity to GP:21328621 YP_271476.1 identified by match to protein family HMM PF01145 YP_271477.1 identified by similarity to OMNI:NTL02LI0972; match to protein family HMM PF06865 YP_271478.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_271479.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_271480.1 identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_271482.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_271483.1 identified by similarity to SP:P13048 YP_271484.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_271485.1 identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110 YP_271486.1 identified by match to protein family HMM PF00291; match to protein family HMM PF00585; match to protein family HMM TIGR01124 YP_271487.1 identified by similarity to OMNI:SO0462 YP_271489.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_271491.1 identified by similarity to SP:P14707; match to protein family HMM PF01548; match to protein family HMM PF02371 YP_271494.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO4594 YP_271496.1 identified by similarity to SP:P77239; match to protein family HMM TIGR01730 YP_271497.1 identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_271500.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:468278 YP_271503.1 identified by similarity to GP:2956674; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450 YP_271504.1 identified by similarity to GP:18655921; match to protein family HMM PF01315; match to protein family HMM PF02738 YP_271505.1 identified by similarity to GP:4741723; match to protein family HMM PF02625 YP_271506.1 identified by similarity to SP:P77671; match to protein family HMM PF01979; match to protein family HMM PF07969 YP_271507.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_271508.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:29607047 YP_271509.1 identified by similarity to SP:P76341; match to protein family HMM PF00576 YP_271510.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_271511.1 Catalyzes the deamination of guanine YP_271513.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_271515.1 identified by match to protein family HMM PF00440 YP_271516.1 identified by similarity to SP:P39066; match to protein family HMM PF00571 YP_271517.1 identified by match to protein family HMM PF00266 YP_271518.1 This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:PSPTO3671 YP_271520.1 identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949 YP_271521.1 identified by similarity to GP:29604104; match to protein family HMM PF07883 YP_271522.1 identified by match to protein family HMM PF03929 YP_271523.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_271524.1 identified by match to protein family HMM PF00583 YP_271525.1 identified by similarity to SP:P09773; match to protein family HMM PF02423 YP_271526.1 identified by similarity to GP:3299792; match to protein family HMM PF01168 YP_271527.1 identified by similarity to SP:P05792; match to protein family HMM PF00291 YP_271530.1 identified by match to protein family HMM PF01614 YP_271532.1 identified by match to protein family HMM PF03928 YP_271534.1 identified by match to protein family HMM PF04069 YP_271535.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_271537.1 identified by match to protein family HMM PF00583 YP_271540.1 identified by match to protein family HMM PF00165 YP_271541.1 identified by similarity to OMNI:VCA0948 YP_271542.1 identified by similarity to OMNI:NTL03PA00941 YP_271544.1 identified by similarity to OMNI:NTL01SF2537 YP_271545.1 identified by match to protein family HMM PF03473 YP_271547.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_271548.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_271549.1 identified by similarity to OMNI:SO1412 YP_271550.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_271551.1 identified by match to protein family HMM PF00892 YP_271552.1 identified by similarity to SP:P46545; match to protein family HMM PF00557 YP_271553.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_271554.1 identified by match to protein family HMM PF04290 YP_271555.1 identified by similarity to GP:18031990; match to protein family HMM PF03480 YP_271556.1 identified by similarity to GP:535810; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_271557.1 identified by match to protein family HMM PF01177 YP_271558.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_271559.1 identified by match to protein family HMM PF00248 YP_271560.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_271562.1 identified by match to protein family HMM PF03171 YP_271563.1 identified by match to protein family HMM PF00072 YP_271564.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_271565.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00376; match to protein family HMM TIGR01764 YP_271566.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_271567.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_271568.1 identified by similarity to GP:7595279; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409 YP_271569.1 identified by match to protein family HMM PF00034 YP_271570.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_271571.1 identified by similarity to OMNI:SO1399 YP_271572.1 identified by similarity to GP:8650111; match to protein family HMM PF04069 YP_271573.1 identified by similarity to GP:8650112; match to protein family HMM PF00528 YP_271574.1 identified by similarity to OMNI:NTL01SM02702; match to protein family HMM PF00005 YP_271575.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_271576.1 identified by match to protein family HMM PF00106 YP_271580.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_271581.1 identified by similarity to SP:P17169; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_271582.1 identified by match to protein family HMM PF00455 YP_271583.1 identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_271584.1 identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_271585.1 identified by similarity to SP:P23675; match to protein family HMM TIGR02378 YP_271586.1 identified by similarity to SP:P08201; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_271587.1 identified by similarity to OMNI:PSPTO4631; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_271588.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00481 YP_271589.1 identified by similarity to GP:6007443; match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_271591.1 identified by match to protein family HMM PF00474 YP_271592.1 identified by similarity to GP:27360790 YP_271593.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03445 YP_271594.1 identified by match to protein family HMM PF00929 YP_271595.1 identified by match to protein family HMM PF00883 YP_271596.1 identified by match to protein family HMM PF00326 YP_271598.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_271599.1 identified by match to protein family HMM PF00756 YP_271600.1 identified by match to protein family HMM PF00015 YP_271601.1 identified by similarity to OMNI:SO1411 YP_271603.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_271604.1 identified by similarity to SP:Q45388; match to protein family HMM PF00575 YP_271605.1 identified by similarity to SP:P30128; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01461 YP_271607.1 identified by similarity to SP:P35137; match to protein family HMM PF00160 YP_271608.1 identified by similarity to OMNI:SO2794 YP_271609.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_271610.1 identified by similarity to SP:P24234; match to protein family HMM PF00625 YP_271611.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_271612.1 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_271613.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_271614.1 specifically modifies tRNA at position G18 YP_271615.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM TIGR00643 YP_271617.1 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_271619.1 identified by similarity to OMNI:PSPTO5295 YP_271623.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_271624.1 identified by similarity to OMNI:SO0341; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF07494; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_271625.1 identified by similarity to SP:P27298; match to protein family HMM PF01432 YP_271626.1 identified by similarity to GP:27361786 YP_271627.1 identified by similarity to SP:P29956; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_271628.1 identified by similarity to OMNI:NTL01CA1475 YP_271629.1 identified by similarity to OMNI:NTL01NS0496; match to protein family HMM TIGR02602 YP_271630.1 identified by similarity to OMNI:NTL01NS5198 YP_271635.1 identified by match to protein family HMM PF03372 YP_271636.1 identified by match to protein family HMM PF03372 YP_271638.1 identified by match to protein family HMM PF00534 YP_271639.1 identified by match to protein family HMM PF00733 YP_271640.1 identified by match to protein family HMM PF00534 YP_271641.1 identified by match to protein family HMM PF01757 YP_271643.1 identified by match to protein family HMM PF04932 YP_271644.1 identified by match to protein family HMM PF01757 YP_271645.1 identified by similarity to GP:27354583 YP_271648.1 identified by similarity to GP:1545849; match to protein family HMM PF01757 YP_271649.1 identified by match to protein family HMM PF02388 YP_271650.1 identified by similarity to OMNI:NTL03CP1869 YP_271651.1 identified by match to protein family HMM PF01943 YP_271654.1 identified by similarity to SP:P39860 YP_271655.1 identified by match to protein family HMM PF00534 YP_271656.1 identified by match to protein family HMM PF01522 YP_271657.1 identified by match to protein family HMM PF00534 YP_271659.1 identified by match to protein family HMM PF00535 YP_271661.1 identified by match to protein family HMM PF01522 YP_271662.1 identified by match to protein family HMM PF02397 YP_271664.1 identified by similarity to SP:P76388; match to protein family HMM PF02563 YP_271665.1 identified by match to protein family HMM PF02706 YP_271666.1 identified by similarity to SP:P39851 YP_271668.1 identified by similarity to SP:P45754 YP_271669.1 identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_271670.1 identified by similarity to SP:Q06067; match to protein family HMM PF02518 YP_271671.1 identified by match to protein family HMM PF00873 YP_271672.1 identified by match to protein family HMM TIGR01730 YP_271673.1 identified by similarity to OMNI:NTL01ATA0312 YP_271675.1 identified by match to protein family HMM PF00691 YP_271678.1 identified by match to protein family HMM PF00005 YP_271679.1 identified by match to protein family HMM PF02687 YP_271680.1 identified by match to protein family HMM PF02687 YP_271681.1 identified by similarity to GP:28808723 YP_271682.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_271683.1 identified by match to protein family HMM PF01656 YP_271684.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_271685.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_271686.1 identified by similarity to SP:P03817; match to protein family HMM PF00258 YP_271687.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_271688.1 identified by match to protein family HMM PF02096 YP_271689.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_271690.1 identified by similarity to SP:P06277; match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_271691.1 identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030