-- dump date 20240506_011742 -- class Genbank::Contig -- table contig_comment -- id comment NC_019793.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003382.1.REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: ChileREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desertREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in ChileREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30CREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistantREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003382.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019789.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003383.1.REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: ChileREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desertREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in ChileREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30CREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistantREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003383.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019790.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003384.1.REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: ChileREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desertREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in ChileREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30CREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistantREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003384.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087340 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Deinococcus peraridilitoris DSM 19664 collection_date :: 2007 lat_lon :: -24.60 -69.53 depth :: Missing alt_elev :: Missing country :: Chile environment :: Soil num_replicons :: 3 ref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: 17625166 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04183 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Arid soil collected from a coastal desert north of Antofagasta in Chile Cell Shape :: Coccus-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 30C pH :: 6.5 - 8.0 Gram Staining :: Gram+ Phenotypes :: Radiation resistant ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/03/2023 01:25:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,428 CDSs (total) :: 4,365 Genes (coding) :: 4,294 CDSs (with protein) :: 4,294 Genes (RNA) :: 63 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 71 CDSs (without protein) :: 71 Pseudo Genes (ambiguous residues) :: 0 of 71 Pseudo Genes (frameshifted) :: 27 of 71 Pseudo Genes (incomplete) :: 51 of 71 Pseudo Genes (internal stop) :: 11 of 71 Pseudo Genes (multiple problems) :: 16 of 71 ##Genome-Annotation-Data-END## COMPLETENESS: full length.