-- dump date 20240506_000809 -- class Genbank::Contig -- table contig_comment -- id comment NC_010002.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000884.1.REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David SchleheckREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatmentREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterialREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners ofREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). TheREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of theREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [ComamonasREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism ParvibaculumREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into manyREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some ofREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set ofREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs.REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32 Pseudo Genes (internal stop) :: 8 of 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 5 of 32REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 5 of 32 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 5 of 32 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000884.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002762 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ: DSM 14801 (http://www.dsmz.de) Delftia acidovorans SPH-1 was isolated from a sewage treatment plant in Germany and is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate (LAS) surfactants (reference 1). The community genome was kindly established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4003071 [Parvibaculum lavamentivorans DS-1] and 4002763 [Comamonas testosteroni KF-1]). The first-tier organism Parvibaculum lavamentivorans converts LAS surfactants into many sulfophenylcarboxylates (SPCs), and Delftia acidovorans SPH-1 represents a second-tier organism by completely degrading some of these SPCs; Comamonas testosteroni degrades a different set of SPCs. Contacts: David Schleheck (david.schleheck@unsw.edu.au) Staffan Kjelleberg (s.kjelleberg@unsw.edu.au) Alasdair Cook (alasdair.cook@uni-konstanz.de) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/15/2023 02:27:54 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,261 CDSs (total) :: 6,163 Genes (coding) :: 6,131 CDSs (with protein) :: 6,131 Genes (RNA) :: 98 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 80 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 11 of 32 Pseudo Genes (incomplete) :: 19 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 5 of 32 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.