-- dump date 20140619_060659 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 398578000001 SEQ_END SEQ_END NC_010002.1 6767514 6767514 DR NC_010002.1; contig end 6767514..6767514 Delftia acidovorans SPH-1 YP_001561033.1 CDS dnaA NC_010002.1 16 1422 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 16..1422 Delftia acidovorans SPH-1 5751690 YP_001561034.1 CDS Daci_0002 NC_010002.1 1544 2662 D KEGG: aav:Aave_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1544..2662 Delftia acidovorans SPH-1 5745538 YP_001561035.1 CDS Daci_0003 NC_010002.1 2865 5444 D KEGG: ajs:Ajs_4146 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 2865..5444 Delftia acidovorans SPH-1 5745539 YP_001561036.1 CDS Daci_0004 NC_010002.1 5770 6699 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_4576 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5770..6699) Delftia acidovorans SPH-1 5745540 YP_001561037.1 CDS Daci_0005 NC_010002.1 6915 7727 D PFAM: LamB/YcsF family protein; KEGG: vei:Veis_4577 LamB/YcsF family protein; hypothetical protein 6915..7727 Delftia acidovorans SPH-1 5745541 YP_001561038.1 CDS Daci_0006 NC_010002.1 7781 8029 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vei:Veis_4578 biotin/lipoyl attachment domain-containing protein; hypothetical protein 7781..8029 Delftia acidovorans SPH-1 5745542 YP_001561039.1 CDS Daci_0007 NC_010002.1 8040 9437 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: vei:Veis_4579 carbamoyl-phosphate synthase L chain, ATP-binding; acetyl-CoA carboxylase, biotin carboxylase 8040..9437 Delftia acidovorans SPH-1 5745543 YP_001561040.1 CDS Daci_0008 NC_010002.1 9434 10345 D PFAM: Allophanate hydrolase subunit 1; KEGG: bur:Bcep18194_A6283 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 9434..10345 Delftia acidovorans SPH-1 5745544 YP_001561041.1 CDS Daci_0009 NC_010002.1 10335 11312 D KEGG: vei:Veis_4581 UreA amidolyase related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 10335..11312 Delftia acidovorans SPH-1 5745545 YP_001561042.1 CDS Daci_0010 NC_010002.1 11432 12595 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A3377 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F complement(11432..12595) Delftia acidovorans SPH-1 5745546 YP_001561043.1 CDS Daci_0011 NC_010002.1 12690 13610 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A3376 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(12690..13610) Delftia acidovorans SPH-1 5745547 YP_001561044.1 CDS Daci_0012 NC_010002.1 13737 14708 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3811 uncharacterized protein UPF0065; hypothetical protein 13737..14708 Delftia acidovorans SPH-1 5745548 YP_001561045.1 CDS Daci_0013 NC_010002.1 14720 15184 D PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3812 MaoC-like dehydratase; dehydratase 14720..15184 Delftia acidovorans SPH-1 5745549 YP_001561046.1 CDS Daci_0014 NC_010002.1 15195 15713 D PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_4149 protein of unknown function UPF0153; hypothetical protein 15195..15713 Delftia acidovorans SPH-1 5745550 YP_001561047.1 CDS Daci_0015 NC_010002.1 15884 17290 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mms:mma_0288 two-component sensor histidine kinase; histidine kinase complement(15884..17290) Delftia acidovorans SPH-1 5745551 YP_001561048.1 CDS Daci_0016 NC_010002.1 17295 18083 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mms:mma_0289 two-components system response regulator; two component transcriptional regulator complement(17295..18083) Delftia acidovorans SPH-1 5745552 YP_001561049.1 CDS Daci_0017 NC_010002.1 18230 19651 R PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_7436 outer membrane efflux protein; outer membrane efflux protein complement(18230..19651) Delftia acidovorans SPH-1 5745553 YP_001561050.1 CDS Daci_0018 NC_010002.1 19638 22742 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_7437 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(19638..22742) Delftia acidovorans SPH-1 5745554 YP_001561051.1 CDS Daci_0019 NC_010002.1 22764 23912 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mxa:MXAN_7438 putative cobalt-zinc-cadmium resistance protein; RND family efflux transporter MFP subunit complement(22764..23912) Delftia acidovorans SPH-1 5745555 YP_001561052.1 CDS Daci_0020 NC_010002.1 24333 24644 D hypothetical protein 24333..24644 Delftia acidovorans SPH-1 5745556 YP_001561053.1 CDS dinG NC_010002.1 24810 26888 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 24810..26888 Delftia acidovorans SPH-1 5745557 YP_001561054.1 CDS Daci_0022 NC_010002.1 28449 29111 R KEGG: aav:Aave_0023 hypothetical protein; hypothetical protein complement(28449..29111) Delftia acidovorans SPH-1 5745558 YP_001561055.1 CDS Daci_0023 NC_010002.1 29287 29841 R KEGG: ajs:Ajs_0007 hypothetical protein; hypothetical protein complement(29287..29841) Delftia acidovorans SPH-1 5745559 YP_001561056.1 CDS rdgC NC_010002.1 30152 31207 D Required for efficient pilin antigenic variation; recombination associated protein 30152..31207 Delftia acidovorans SPH-1 5745560 YP_001561057.1 CDS Daci_0025 NC_010002.1 31268 32455 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(31268..32455) Delftia acidovorans SPH-1 5745561 YP_001561058.1 CDS Daci_0026 NC_010002.1 32555 33343 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_4068 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(32555..33343) Delftia acidovorans SPH-1 5745562 YP_001561059.1 CDS Daci_0027 NC_010002.1 33353 35188 R PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_4067 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(33353..35188) Delftia acidovorans SPH-1 5745563 YP_001561060.1 CDS Daci_0028 NC_010002.1 35334 36152 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_4066 ABC transporter related; ABC transporter-like protein complement(35334..36152) Delftia acidovorans SPH-1 5745564 YP_001561061.1 CDS Daci_0029 NC_010002.1 36178 37359 R PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(36178..37359) Delftia acidovorans SPH-1 5745565 YP_001561062.1 CDS Daci_0030 NC_010002.1 37397 38434 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4064 inner-membrane translocator; inner-membrane translocator complement(37397..38434) Delftia acidovorans SPH-1 5745566 YP_001561063.1 CDS Daci_0031 NC_010002.1 38457 39338 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4063 inner-membrane translocator; inner-membrane translocator complement(38457..39338) Delftia acidovorans SPH-1 5745567 YP_001561064.1 CDS Daci_0032 NC_010002.1 39335 40219 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2037 high-affinity branched-chain amino acid transport ATP-binding protein; ABC transporter-like protein complement(39335..40219) Delftia acidovorans SPH-1 5745568 YP_001561065.1 CDS Daci_0033 NC_010002.1 40350 41120 D PFAM: regulatory protein TetR; KEGG: rfr:Rfer_4061 transcriptional regulator, TetR family; TetR family transcriptional regulator 40350..41120 Delftia acidovorans SPH-1 5745569 YP_001561066.1 CDS Daci_0034 NC_010002.1 41147 41581 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ajs:Ajs_0017 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(41147..41581) Delftia acidovorans SPH-1 5745570 YP_001561067.1 CDS Daci_0035 NC_010002.1 41626 41820 R PFAM: Heavy metal transport/detoxification protein; KEGG: vei:Veis_1021 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(41626..41820) Delftia acidovorans SPH-1 5745571 YP_001561068.1 CDS Daci_0036 NC_010002.1 42121 43824 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0035 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 42121..43824 Delftia acidovorans SPH-1 5745572 YP_001561069.1 CDS Daci_0037 NC_010002.1 43930 45048 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ajs:Ajs_0022 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(43930..45048) Delftia acidovorans SPH-1 5745573 YP_001561070.1 CDS Daci_0038 NC_010002.1 45130 45711 R PFAM: NADPH-dependent FMN reductase; KEGG: azo:azo2988 probable chromate reductase; NADPH-dependent FMN reductase complement(45130..45711) Delftia acidovorans SPH-1 5745574 YP_001561071.1 CDS Daci_0039 NC_010002.1 45716 46690 R PFAM: conserved hypothetical protein; KEGG: bja:blr3080 hypothetical protein; hypothetical protein complement(45716..46690) Delftia acidovorans SPH-1 5745575 YP_001561072.1 CDS Daci_0040 NC_010002.1 46791 47342 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_06420 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(46791..47342) Delftia acidovorans SPH-1 5745576 YP_001561073.1 CDS Daci_0041 NC_010002.1 47355 47741 R PFAM: NIPSNAP family containing protein; KEGG: rsh:Rsph17029_3880 NIPSNAP family containing protein; NIPSNAP family protein complement(47355..47741) Delftia acidovorans SPH-1 5745577 YP_001561074.1 CDS Daci_0042 NC_010002.1 47755 48510 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_1570 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(47755..48510) Delftia acidovorans SPH-1 5745578 YP_001561075.1 CDS Daci_0043 NC_010002.1 48625 49398 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein; IclR family transcriptional regulator 48625..49398 Delftia acidovorans SPH-1 5745579 YP_001561076.1 CDS Daci_0044 NC_010002.1 49470 50120 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0023 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein complement(49470..50120) Delftia acidovorans SPH-1 5745580 YP_001561077.1 CDS Daci_0045 NC_010002.1 50174 50761 R PFAM: NADPH-dependent FMN reductase; KEGG: aav:Aave_0050 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(50174..50761) Delftia acidovorans SPH-1 5745581 YP_001561078.1 CDS Daci_0046 NC_010002.1 51062 53041 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 51062..53041 Delftia acidovorans SPH-1 5745582 YP_001561079.1 CDS gidB NC_010002.1 53038 53697 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 53038..53697 Delftia acidovorans SPH-1 5745583 YP_001561080.1 CDS Daci_0048 NC_010002.1 53804 54418 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0028 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 53804..54418 Delftia acidovorans SPH-1 5745584 YP_001561081.1 CDS Daci_0049 NC_010002.1 54432 55202 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_0029 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 54432..55202 Delftia acidovorans SPH-1 5745585 YP_001561082.1 CDS Daci_0050 NC_010002.1 55374 55934 D PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_0055 protein of unknown function DUF1234; hypothetical protein 55374..55934 Delftia acidovorans SPH-1 5745586 YP_001561083.1 CDS Daci_0051 NC_010002.1 55948 56883 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 ParB-like partition protein; parB-like partition protein 55948..56883 Delftia acidovorans SPH-1 5745587 YP_001561084.1 CDS Daci_0052 NC_010002.1 57079 58113 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aav:Aave_0066 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 57079..58113 Delftia acidovorans SPH-1 5745588 YP_001561085.1 CDS Daci_0053 NC_010002.1 58302 59123 D KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase 58302..59123 Delftia acidovorans SPH-1 5745589 YP_001561086.1 CDS Daci_0054 NC_010002.1 59137 59484 R KEGG: ajs:Ajs_0034 cytochrome c, class I; class I cytochrome c complement(59137..59484) Delftia acidovorans SPH-1 5745590 YP_001561087.1 CDS Daci_0055 NC_010002.1 59571 60824 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: ajs:Ajs_0035 oxidoreductase, molybdopterin binding; molybdopterin-binding oxidoreductase complement(59571..60824) Delftia acidovorans SPH-1 5745591 YP_001561088.1 CDS Daci_0056 NC_010002.1 60896 61483 R hypothetical protein complement(60896..61483) Delftia acidovorans SPH-1 5745592 YP_001561089.1 CDS Daci_0057 NC_010002.1 61480 62070 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_0037 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(61480..62070) Delftia acidovorans SPH-1 5745593 YP_001561090.1 CDS Daci_0058 NC_010002.1 62127 63056 R PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_0082 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(62127..63056) Delftia acidovorans SPH-1 5745594 YP_001561091.1 CDS Daci_0059 NC_010002.1 63263 64516 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0083 major facilitator superfamily MFS_1; major facilitator transporter 63263..64516 Delftia acidovorans SPH-1 5745595 YP_001561092.1 CDS Daci_0060 NC_010002.1 64674 65963 D catalyzes the release of C-terminal glutamate residues from N-acylating moieties; glutamate carboxypeptidase 64674..65963 Delftia acidovorans SPH-1 5745596 YP_001561093.1 CDS Daci_0061 NC_010002.1 66152 67153 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_1755 twin-arginine translocation pathway signal; hypothetical protein complement(66152..67153) Delftia acidovorans SPH-1 5745597 YP_001561094.1 CDS Daci_0062 NC_010002.1 67225 68433 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_1756 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(67225..68433) Delftia acidovorans SPH-1 5745598 YP_001561095.1 CDS Daci_0063 NC_010002.1 68563 69468 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_1757 transcriptional regulator, LysR family; LysR family transcriptional regulator 68563..69468 Delftia acidovorans SPH-1 5745599 YP_001561096.1 CDS Daci_0064 NC_010002.1 69458 70882 R PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_0095 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(69458..70882) Delftia acidovorans SPH-1 5745600 YP_001561097.1 CDS Daci_0065 NC_010002.1 70965 71333 R KEGG: ajs:Ajs_0042 calcium-binding EF-hand-containing protein; signal transduction protein complement(70965..71333) Delftia acidovorans SPH-1 5745601 YP_001561098.1 CDS Daci_0066 NC_010002.1 71515 72087 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ajs:Ajs_0043 ATP--cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 71515..72087 Delftia acidovorans SPH-1 5745602 YP_001561099.1 CDS Daci_0067 NC_010002.1 72141 73046 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1935 transcriptional regulator, LysR family; LysR family transcriptional regulator 72141..73046 Delftia acidovorans SPH-1 5745603 YP_001561100.1 CDS Daci_0068 NC_010002.1 73214 74146 D KEGG: mag:amb0959 uncharacterized membrane-bound protein; hypothetical protein 73214..74146 Delftia acidovorans SPH-1 5745604 YP_001561101.1 CDS Daci_0069 NC_010002.1 74836 76071 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1999 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(74836..76071) Delftia acidovorans SPH-1 5745605 YP_001561102.1 CDS Daci_0070 NC_010002.1 76294 77175 D PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_4737 extracellular solute-binding protein, family 3; extracellular solute-binding protein 76294..77175 Delftia acidovorans SPH-1 5745606 YP_001561103.1 CDS Daci_0071 NC_010002.1 77190 77951 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4736 aspartate racemase; aspartate racemase 77190..77951 Delftia acidovorans SPH-1 5745607 YP_001561104.1 CDS Daci_0072 NC_010002.1 77945 79264 R TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vei:Veis_0734 oxidoreductase FAD/NAD(P)-binding domain protein; benzoyl-CoA oxygenase/reductase, BoxA protein complement(77945..79264) Delftia acidovorans SPH-1 5745608 YP_001561105.1 CDS Daci_0073 NC_010002.1 79291 80718 R KEGG: pna:Pnap_2943 benzoyl-CoA oxygenase component B; benzoyl-CoA oxygenase component B complement(79291..80718) Delftia acidovorans SPH-1 5745609 YP_001561106.1 CDS Daci_0074 NC_010002.1 80757 82427 R cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase complement(80757..82427) Delftia acidovorans SPH-1 5745610 YP_001561107.1 CDS Daci_0075 NC_010002.1 82621 83535 R consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator complement(82621..83535) Delftia acidovorans SPH-1 5745611 YP_001561108.1 CDS Daci_0076 NC_010002.1 83710 85266 D TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1918 benzoate-coenzyme A ligase; benzoate-CoA ligase family protein 83710..85266 Delftia acidovorans SPH-1 5745612 YP_001561109.1 CDS Daci_0077 NC_010002.1 85325 86488 D PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_2950 extracellular ligand-binding receptor; extracellular ligand-binding receptor 85325..86488 Delftia acidovorans SPH-1 5745613 YP_001561110.1 CDS Daci_0078 NC_010002.1 86539 87411 D PFAM: inner-membrane translocator; KEGG: reh:H16_A1415 ABC-type transporter, permease component: HAAT family; inner-membrane translocator 86539..87411 Delftia acidovorans SPH-1 5745614 YP_001561111.1 CDS Daci_0079 NC_010002.1 87415 88500 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; inner-membrane translocator 87415..88500 Delftia acidovorans SPH-1 5745615 YP_001561112.1 CDS Daci_0080 NC_010002.1 88493 89251 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2953 ABC transporter related; ABC transporter-like protein 88493..89251 Delftia acidovorans SPH-1 5745616 YP_001561113.1 CDS Daci_0081 NC_010002.1 89244 89957 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2954 ABC transporter related; ABC transporter-like protein 89244..89957 Delftia acidovorans SPH-1 5745617 YP_001561114.1 CDS Daci_0082 NC_010002.1 89990 90835 R PFAM: Domain of unknown function DUF1814; KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein complement(89990..90835) Delftia acidovorans SPH-1 5745618 YP_001561115.1 CDS Daci_0083 NC_010002.1 90832 91446 R KEGG: xom:XOO_2998 hypothetical protein; hypothetical protein complement(90832..91446) Delftia acidovorans SPH-1 5745619 YP_001561116.1 CDS Daci_0084 NC_010002.1 91554 92027 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 uncharacterized domain 1; thioesterase superfamily protein complement(91554..92027) Delftia acidovorans SPH-1 5745620 YP_001561117.1 CDS Daci_0085 NC_010002.1 92166 93680 R KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(92166..93680) Delftia acidovorans SPH-1 5745621 YP_001561118.1 CDS Daci_0086 NC_010002.1 93888 95195 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ajs:Ajs_0048 uracil-xanthine permease; uracil-xanthine permease complement(93888..95195) Delftia acidovorans SPH-1 5745622 YP_001561119.1 CDS Daci_0087 NC_010002.1 95340 97454 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 95340..97454 Delftia acidovorans SPH-1 5745623 YP_001561120.1 CDS Daci_0088 NC_010002.1 97543 98700 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 97543..98700 Delftia acidovorans SPH-1 5745624 YP_001561121.1 CDS Daci_0089 NC_010002.1 98869 99897 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_4039 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 98869..99897 Delftia acidovorans SPH-1 5745625 YP_001561122.1 CDS Daci_0090 NC_010002.1 99921 100709 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 99921..100709 Delftia acidovorans SPH-1 5745626 YP_001561123.1 CDS Daci_0091 NC_010002.1 100809 101624 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: aav:Aave_0124 septum site-determining protein MinC; septum site-determining protein MinC 100809..101624 Delftia acidovorans SPH-1 5745627 YP_001561124.1 CDS Daci_0092 NC_010002.1 101674 102486 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aav:Aave_0125 septum site-determining protein MinD; septum site-determining protein MinD 101674..102486 Delftia acidovorans SPH-1 5745628 YP_001561125.1 CDS Daci_0093 NC_010002.1 102493 102756 D TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: ajs:Ajs_0067 cell division topological specificity factor MinE; cell division topological specificity factor MinE 102493..102756 Delftia acidovorans SPH-1 5745629 YP_001561126.1 CDS Daci_0094 NC_010002.1 102986 104047 R PFAM: amino acid permease-associated region; KEGG: pfl:PFL_0408 amino acid transporter; amino acid permease-associated protein complement(102986..104047) Delftia acidovorans SPH-1 5745630 YP_001561127.1 CDS Daci_0096 NC_010002.1 104602 105105 R PFAM: flavin reductase domain protein FMN-binding; KEGG: vei:Veis_5008 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(104602..105105) Delftia acidovorans SPH-1 5745632 YP_001561128.1 CDS Daci_0097 NC_010002.1 105296 105931 R KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(105296..105931) Delftia acidovorans SPH-1 5745633 YP_001561129.1 CDS Daci_0098 NC_010002.1 105976 106476 R TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bra:BRADO2596 putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like; MarR family transcriptional regulator complement(105976..106476) Delftia acidovorans SPH-1 5745634 YP_001561130.1 CDS Daci_0099 NC_010002.1 106551 107372 R KEGG: rha:RHA1_ro10138 4-hydroxy-2-oxovalerate aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(106551..107372) Delftia acidovorans SPH-1 5745635 YP_001561131.1 CDS Daci_0100 NC_010002.1 107391 108845 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: eba:ebA2996 succinate-semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(107391..108845) Delftia acidovorans SPH-1 5745636 YP_001561132.1 CDS Daci_0101 NC_010002.1 108891 109724 R KEGG: bbr:BB0739 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase complement(108891..109724) Delftia acidovorans SPH-1 5745637 YP_001561133.1 CDS Daci_0102 NC_010002.1 109726 110160 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbr:BB0738 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(109726..110160) Delftia acidovorans SPH-1 5745638 YP_001561134.1 CDS Daci_0103 NC_010002.1 110161 110979 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: swi:Swit_4311 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B complement(110161..110979) Delftia acidovorans SPH-1 5745639 YP_001561135.1 CDS Daci_0104 NC_010002.1 110981 111307 R PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: swi:Swit_4310 hypothetical protein; extradiol ring-cleavage dioxygenase LigAB LigA subunit complement(110981..111307) Delftia acidovorans SPH-1 5745640 YP_001561136.1 CDS Daci_0105 NC_010002.1 111328 112320 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0143 uncharacterized protein UPF0065; hypothetical protein complement(111328..112320) Delftia acidovorans SPH-1 5745641 YP_001561137.1 CDS Daci_0106 NC_010002.1 112366 113823 R TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bbr:BB0736 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase complement(112366..113823) Delftia acidovorans SPH-1 5745642 YP_001561138.1 CDS Daci_0107 NC_010002.1 113852 114613 R KEGG: bcy:Bcer98_0972 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 complement(113852..114613) Delftia acidovorans SPH-1 5745643 YP_001561139.1 CDS Daci_0108 NC_010002.1 114610 115290 R KEGG: bte:BTH_II1735 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1 complement(114610..115290) Delftia acidovorans SPH-1 5745644 YP_001561140.1 CDS Daci_0109 NC_010002.1 115464 119141 R PFAM: Fibronectin type III domain protein; KEGG: ava:Ava_4728 endonuclease/exonuclease/phosphatase; fibronectin type III domain-containing protein complement(115464..119141) Delftia acidovorans SPH-1 5745645 YP_001561141.1 CDS Daci_0110 NC_010002.1 119345 119767 R PFAM: UspA domain protein; KEGG: ajs:Ajs_0074 UspA domain protein; UspA domain-containing protein complement(119345..119767) Delftia acidovorans SPH-1 5745646 YP_001561142.1 CDS Daci_0111 NC_010002.1 119831 120730 R PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase; metallophosphoesterase complement(119831..120730) Delftia acidovorans SPH-1 5745647 YP_001561143.1 CDS Daci_0112 NC_010002.1 120779 121738 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(120779..121738) Delftia acidovorans SPH-1 5745648 YP_001561144.1 CDS Daci_0113 NC_010002.1 121880 122299 D KEGG: ajs:Ajs_0077 hypothetical protein; hypothetical protein 121880..122299 Delftia acidovorans SPH-1 5745649 YP_001561145.1 CDS Daci_0114 NC_010002.1 122441 124306 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(122441..124306) Delftia acidovorans SPH-1 5745650 YP_001561146.1 CDS Daci_0115 NC_010002.1 124632 124784 R KEGG: rfr:Rfer_0345 hypothetical protein; hypothetical protein complement(124632..124784) Delftia acidovorans SPH-1 5745651 YP_001561147.1 CDS Daci_0116 NC_010002.1 124875 126122 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(124875..126122) Delftia acidovorans SPH-1 5745652 YP_001561148.1 CDS Daci_0117 NC_010002.1 126210 127238 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_1692 transcriptional regulator, AraC family; AraC family transcriptional regulator 126210..127238 Delftia acidovorans SPH-1 5745653 YP_001561149.1 CDS Daci_0118 NC_010002.1 127377 128489 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: oan:Oant_1901 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 127377..128489 Delftia acidovorans SPH-1 5745654 YP_001561150.1 CDS Daci_0119 NC_010002.1 128511 130031 R PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_A3296 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(128511..130031) Delftia acidovorans SPH-1 5745655 YP_001561151.1 CDS Daci_0120 NC_010002.1 130077 131771 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(130077..131771) Delftia acidovorans SPH-1 5745656 YP_001561152.1 CDS Daci_0121 NC_010002.1 131868 132476 D PFAM: regulatory protein TetR; KEGG: bam:Bamb_0108 transcriptional regulator, TetR family; TetR family transcriptional regulator 131868..132476 Delftia acidovorans SPH-1 5745657 YP_001561153.1 CDS Daci_0122 NC_010002.1 132518 133696 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4320 histidine kinase; histidine kinase complement(132518..133696) Delftia acidovorans SPH-1 5745658 YP_001561154.1 CDS Daci_0123 NC_010002.1 133681 134406 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4321 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(133681..134406) Delftia acidovorans SPH-1 5745659 YP_001561155.1 CDS Daci_0124 NC_010002.1 134540 135544 R PFAM: Fimbrial protein; KEGG: kpn:KPN_03276 putative fimbrial-like protein; fimbrial protein complement(134540..135544) Delftia acidovorans SPH-1 5745660 YP_001561156.1 CDS Daci_0125 NC_010002.1 135577 137361 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_4322 transcriptional regulator, fis family; RND efflux system outer membrane lipoprotein 135577..137361 Delftia acidovorans SPH-1 5745661 YP_001561157.1 CDS Daci_0126 NC_010002.1 137358 138512 D PFAM: protein of unknown function DUF214; KEGG: aav:Aave_4323 protein of unknown function DUF214; hypothetical protein 137358..138512 Delftia acidovorans SPH-1 5745662 YP_001561158.1 CDS Daci_0127 NC_010002.1 138528 139286 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4324 ABC transporter-related protein; ABC transporter-like protein 138528..139286 Delftia acidovorans SPH-1 5745663 YP_001561159.1 CDS Daci_0128 NC_010002.1 139283 140227 D PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_4325 secretion protein HlyD family protein; secretion protein HlyD family protein 139283..140227 Delftia acidovorans SPH-1 5745664 YP_001561160.1 CDS Daci_0129 NC_010002.1 140220 140924 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 140220..140924 Delftia acidovorans SPH-1 5745665 YP_001561161.1 CDS Daci_0130 NC_010002.1 140921 141862 D PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_4327 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 140921..141862 Delftia acidovorans SPH-1 5745666 YP_001561162.1 CDS Daci_0131 NC_010002.1 141852 142220 D KEGG: aav:Aave_4328 hypothetical protein; hypothetical protein 141852..142220 Delftia acidovorans SPH-1 5745667 YP_001561163.1 CDS Daci_0132 NC_010002.1 142385 142879 D KEGG: aav:Aave_4329 hypothetical protein; hypothetical protein 142385..142879 Delftia acidovorans SPH-1 5745668 YP_001561164.1 CDS Daci_0133 NC_010002.1 142872 144098 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: aav:Aave_4330 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 142872..144098 Delftia acidovorans SPH-1 5745669 YP_001561165.1 CDS Daci_0134 NC_010002.1 144061 145383 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_3871 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(144061..145383) Delftia acidovorans SPH-1 5745670 YP_001561166.1 CDS Daci_0135 NC_010002.1 145461 146372 R KEGG: aav:Aave_4331 hypothetical protein; hypothetical protein complement(145461..146372) Delftia acidovorans SPH-1 5745671 YP_001561167.1 CDS Daci_0136 NC_010002.1 146354 147427 R KEGG: aav:Aave_4332 hypothetical protein; hypothetical protein complement(146354..147427) Delftia acidovorans SPH-1 5745672 YP_001561168.1 CDS Daci_0137 NC_010002.1 147435 149063 R PFAM: aminotransferase class-III; KEGG: aav:Aave_4333 aminotransferase class-III; class III aminotransferase complement(147435..149063) Delftia acidovorans SPH-1 5745673 YP_001561169.1 CDS Daci_0138 NC_010002.1 149086 151518 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 149086..151518 Delftia acidovorans SPH-1 5745674 YP_001561170.1 CDS Daci_0139 NC_010002.1 151691 152179 D KEGG: ccr:CC_2193 hypothetical protein; hypothetical protein 151691..152179 Delftia acidovorans SPH-1 5745675 YP_001561171.1 CDS Daci_0140 NC_010002.1 152186 152995 D KEGG: xcb:XC_1336 hypothetical protein; hypothetical protein 152186..152995 Delftia acidovorans SPH-1 5745676 YP_001561172.1 CDS Daci_0141 NC_010002.1 153096 155129 R KEGG: aav:Aave_0181 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(153096..155129) Delftia acidovorans SPH-1 5745677 YP_001561173.1 CDS Daci_0142 NC_010002.1 155248 156399 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B0975 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(155248..156399) Delftia acidovorans SPH-1 5745678 YP_001561174.1 CDS Daci_0143 NC_010002.1 156410 157651 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B0974 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F complement(156410..157651) Delftia acidovorans SPH-1 5745679 YP_001561175.1 CDS Daci_0144 NC_010002.1 157746 158636 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A0487 transcriptional regulator, LysR-family; LysR family transcriptional regulator 157746..158636 Delftia acidovorans SPH-1 5745680 YP_001561176.1 CDS Daci_0145 NC_010002.1 158911 159885 D KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 158911..159885 Delftia acidovorans SPH-1 5745681 YP_001561177.1 CDS Daci_0146 NC_010002.1 159898 160788 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 159898..160788 Delftia acidovorans SPH-1 5745682 YP_001561178.1 CDS Daci_0147 NC_010002.1 160788 161567 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1045 ABC transporter related; ABC transporter-like protein 160788..161567 Delftia acidovorans SPH-1 5745683 YP_001561179.1 CDS Daci_0148 NC_010002.1 161577 162365 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aav:Aave_2966 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 161577..162365 Delftia acidovorans SPH-1 5745684 YP_001561180.1 CDS Daci_0149 NC_010002.1 162479 164050 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 162479..164050 Delftia acidovorans SPH-1 5745685 YP_001561181.1 CDS Daci_0150 NC_010002.1 164090 165823 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 164090..165823 Delftia acidovorans SPH-1 5745686 YP_001561182.1 CDS Daci_0151 NC_010002.1 165829 166407 D PFAM: protein of unknown function DUF886; KEGG: aav:Aave_2962 protein of unknown function DUF886; hypothetical protein 165829..166407 Delftia acidovorans SPH-1 5745687 YP_001561183.1 CDS Daci_0152 NC_010002.1 166437 167732 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 166437..167732 Delftia acidovorans SPH-1 5745688 YP_001561184.1 CDS Daci_0153 NC_010002.1 167743 169131 D PFAM: FAD linked oxidase domain protein; KEGG: bxe:Bxe_B1817 putative oxidoreductase; FAD linked oxidase domain-containing protein 167743..169131 Delftia acidovorans SPH-1 5745689 YP_001561185.1 CDS Daci_0154 NC_010002.1 169128 170273 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate and L-glutamate from L-histidinol phosphate and 2-oxoglutarate; histidinol-phosphate aminotransferase 169128..170273 Delftia acidovorans SPH-1 5745690 YP_001561186.1 CDS Daci_0155 NC_010002.1 170270 171670 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 170270..171670 Delftia acidovorans SPH-1 5745691 YP_001561187.1 CDS Daci_0156 NC_010002.1 171685 172548 D PFAM: N-formylglutamate amidohydrolase; KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 171685..172548 Delftia acidovorans SPH-1 5745692 YP_001561188.1 CDS Daci_0157 NC_010002.1 172549 173052 R TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bte:BTH_II1612 redox-sensitive transcriptional activator SoxR; MerR family transcriptional regulator complement(172549..173052) Delftia acidovorans SPH-1 5745693 YP_001561189.1 CDS Daci_0158 NC_010002.1 173156 173659 D KEGG: pap:PSPA7_4422 hypothetical protein; hypothetical protein 173156..173659 Delftia acidovorans SPH-1 5745694 YP_001561190.1 CDS Daci_0159 NC_010002.1 173691 174524 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pap:PSPA7_4421 putative HTH-type transcriptional regulator YeaM; AraC family transcriptional regulator 173691..174524 Delftia acidovorans SPH-1 5745695 YP_001561191.1 CDS Daci_0160 NC_010002.1 174545 176521 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: hch:HCH_03958 retron-type reverse transcriptase; RNA-directed DNA polymerase complement(174545..176521) Delftia acidovorans SPH-1 5745696 YP_001561192.1 CDS Daci_0161 NC_010002.1 176829 178556 R PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain; zinc finger SWIM domain-containing protein complement(176829..178556) Delftia acidovorans SPH-1 5745697 YP_001561193.1 CDS Daci_0162 NC_010002.1 178588 181731 R KEGG: hch:HCH_03961 probable DNA binding protein containing WGR domain; hypothetical protein complement(178588..181731) Delftia acidovorans SPH-1 5745698 YP_001561194.1 CDS Daci_0163 NC_010002.1 182181 183395 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bch:Bcen2424_4746 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 182181..183395 Delftia acidovorans SPH-1 5745699 YP_001561195.1 CDS Daci_0164 NC_010002.1 183409 186603 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bch:Bcen2424_4745 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 family protein 183409..186603 Delftia acidovorans SPH-1 5745700 YP_001561196.1 CDS Daci_0165 NC_010002.1 186596 188029 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bch:Bcen2424_4744 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 186596..188029 Delftia acidovorans SPH-1 5745701 YP_001561197.1 CDS Daci_0166 NC_010002.1 188179 189336 D PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0805 FAD dependent oxidoreductase; FAD dependent oxidoreductase 188179..189336 Delftia acidovorans SPH-1 5745702 YP_001561198.1 CDS Daci_0167 NC_010002.1 189398 190483 D KEGG: pfl:PFL_0803 hypothetical protein; hypothetical protein 189398..190483 Delftia acidovorans SPH-1 5745703 YP_001561199.1 CDS Daci_0168 NC_010002.1 190537 191220 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_1469 transcriptional regulator, XRE family; XRE family transcriptional regulator 190537..191220 Delftia acidovorans SPH-1 5745704 YP_001561200.1 CDS Daci_0169 NC_010002.1 191412 192518 D PFAM: homocysteine S-methyltransferase; KEGG: aav:Aave_0174 methionine synthase; homocysteine S-methyltransferase 191412..192518 Delftia acidovorans SPH-1 5745705 YP_001561201.1 CDS Daci_0170 NC_010002.1 192541 193977 D KEGG: aav:Aave_0187 putative Fe-S oxidoreductase; putative Fe-S oxidoreductase 192541..193977 Delftia acidovorans SPH-1 5745706 YP_001561202.1 CDS Daci_0171 NC_010002.1 194297 195295 D PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type; porin 194297..195295 Delftia acidovorans SPH-1 5745707 YP_001561203.1 CDS Daci_0172 NC_010002.1 195296 196948 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mms:mma_0161 methyl-accepting chemotaxis transducer transmembrane protein; methyl-accepting chemotaxis sensory transducer complement(195296..196948) Delftia acidovorans SPH-1 5745708 YP_001561204.1 CDS Daci_0173 NC_010002.1 197543 198844 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0133 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(197543..198844) Delftia acidovorans SPH-1 5745709 YP_001561205.1 CDS Daci_0174 NC_010002.1 199007 199921 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0132 transcriptional regulator, LysR family; LysR family transcriptional regulator 199007..199921 Delftia acidovorans SPH-1 5745710 YP_001561206.1 CDS Daci_0175 NC_010002.1 199958 200386 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0131 uncharacterized domain 1; thioesterase superfamily protein complement(199958..200386) Delftia acidovorans SPH-1 5745711 YP_001561207.1 CDS Daci_0176 NC_010002.1 200383 201540 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0130 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(200383..201540) Delftia acidovorans SPH-1 5745712 YP_001561208.1 CDS Daci_0177 NC_010002.1 201563 202774 R KEGG: ajs:Ajs_0129 thiolase; thiolase complement(201563..202774) Delftia acidovorans SPH-1 5745713 YP_001561209.1 CDS Daci_0178 NC_010002.1 202771 203175 R PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 protein of unknown function DUF35; hypothetical protein complement(202771..203175) Delftia acidovorans SPH-1 5745714 YP_001561210.1 CDS Daci_0179 NC_010002.1 203540 204772 D PFAM: Acetamidase/Formamidase; KEGG: pol:Bpro_0569 formamidase; formamidase 203540..204772 Delftia acidovorans SPH-1 5745715 YP_001561211.1 CDS Daci_0180 NC_010002.1 204790 205143 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pol:Bpro_0570 regulatory protein, putative; FmdB family regulatory protein 204790..205143 Delftia acidovorans SPH-1 5745716 YP_001561212.1 CDS Daci_0181 NC_010002.1 205290 206315 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0127 uncharacterized protein UPF0065; hypothetical protein 205290..206315 Delftia acidovorans SPH-1 5745717 YP_001561213.1 CDS Daci_0182 NC_010002.1 206462 207703 D PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_1640 putative UreA/short-chain amide ABC transporter; extracellular ligand-binding receptor 206462..207703 Delftia acidovorans SPH-1 5745718 YP_001561214.1 CDS Daci_0183 NC_010002.1 207700 208830 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc03929 putative zinc-type alcohol dehydrogenase transmembrane protein; alcohol dehydrogenase 207700..208830 Delftia acidovorans SPH-1 5745719 YP_001561215.1 CDS Daci_0184 NC_010002.1 208894 210336 R PFAM: Amidase; KEGG: rrs:RoseRS_3083 amidase; amidase complement(208894..210336) Delftia acidovorans SPH-1 5745720 YP_001561216.1 CDS Daci_0185 NC_010002.1 210507 211478 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein complement(210507..211478) Delftia acidovorans SPH-1 5745721 YP_001561217.1 CDS Daci_0186 NC_010002.1 211834 213345 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0126 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(211834..213345) Delftia acidovorans SPH-1 5745722 YP_001561218.1 CDS Daci_0187 NC_010002.1 213360 214358 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0125 uncharacterized protein UPF0065; hypothetical protein complement(213360..214358) Delftia acidovorans SPH-1 5745723 YP_001561219.1 CDS Daci_0188 NC_010002.1 214514 215578 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_4850 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(214514..215578) Delftia acidovorans SPH-1 5745724 YP_001561220.1 CDS Daci_0189 NC_010002.1 215624 216832 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2003 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 215624..216832 Delftia acidovorans SPH-1 5745725 YP_001561221.1 CDS Daci_0190 NC_010002.1 216889 217908 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_B2004 NADPH:quinone reductase or related Zn-dependent oxidoreductase; alcohol dehydrogenase 216889..217908 Delftia acidovorans SPH-1 5745726 YP_001561222.1 CDS Daci_0191 NC_010002.1 217905 218912 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B2005 probable extra-cytoplasmic solute receptor; hypothetical protein 217905..218912 Delftia acidovorans SPH-1 5745727 YP_001561223.1 CDS Daci_0192 NC_010002.1 219150 220358 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(219150..220358) Delftia acidovorans SPH-1 5745728 YP_001561224.1 CDS Daci_0193 NC_010002.1 220394 221695 R KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase complement(220394..221695) Delftia acidovorans SPH-1 5745729 YP_001561225.1 CDS Daci_0194 NC_010002.1 221692 222489 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0122 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(221692..222489) Delftia acidovorans SPH-1 5745730 YP_001561226.1 CDS Daci_0195 NC_010002.1 222541 223488 R PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_0121 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(222541..223488) Delftia acidovorans SPH-1 5745731 YP_001561227.1 CDS Daci_0196 NC_010002.1 223606 224610 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0120 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(223606..224610) Delftia acidovorans SPH-1 5745732 YP_001561228.1 CDS Daci_0197 NC_010002.1 224731 225636 D KEGG: ajs:Ajs_0119 hypothetical protein; hypothetical protein 224731..225636 Delftia acidovorans SPH-1 5745733 YP_001561229.1 CDS Daci_0198 NC_010002.1 225667 226833 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B1367 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 225667..226833 Delftia acidovorans SPH-1 5745734 YP_001561230.1 CDS Daci_0199 NC_010002.1 226844 228046 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 226844..228046 Delftia acidovorans SPH-1 5745735 YP_001561231.1 CDS Daci_0200 NC_010002.1 228088 229452 D PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein; MmgE/PrpD family protein 228088..229452 Delftia acidovorans SPH-1 5745736 YP_001561232.1 CDS Daci_0201 NC_010002.1 229556 230563 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0115 uncharacterized protein UPF0065; hypothetical protein 229556..230563 Delftia acidovorans SPH-1 5745737 YP_001561233.1 CDS Daci_0202 NC_010002.1 230587 231459 D PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_0114 HpcH/HpaI aldolase; HpcH/HpaI aldolase 230587..231459 Delftia acidovorans SPH-1 5745738 YP_001561234.1 CDS Daci_0203 NC_010002.1 231646 232713 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0101 uncharacterized protein UPF0065; hypothetical protein 231646..232713 Delftia acidovorans SPH-1 5745739 YP_001561235.1 CDS Daci_0204 NC_010002.1 232852 233397 D hypothetical protein 232852..233397 Delftia acidovorans SPH-1 5745740 YP_001561236.1 CDS Daci_0205 NC_010002.1 233475 234017 R KEGG: aav:Aave_1934 hypothetical protein; hypothetical protein complement(233475..234017) Delftia acidovorans SPH-1 5745741 YP_001561237.1 CDS Daci_0206 NC_010002.1 234050 234460 R KEGG: stm:STM0283 putative inner membrane protein; hypothetical protein complement(234050..234460) Delftia acidovorans SPH-1 5745742 YP_001561238.1 CDS Daci_0207 NC_010002.1 234499 234981 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0100 uncharacterized domain 1; thioesterase superfamily protein complement(234499..234981) Delftia acidovorans SPH-1 5745743 YP_001561239.1 CDS Daci_0208 NC_010002.1 234978 235985 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0099 uncharacterized protein UPF0065; hypothetical protein complement(234978..235985) Delftia acidovorans SPH-1 5745744 YP_001561240.1 CDS Daci_0209 NC_010002.1 235982 237562 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(235982..237562) Delftia acidovorans SPH-1 5745745 YP_001561241.1 CDS Daci_0210 NC_010002.1 237592 238560 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0097 uncharacterized protein UPF0065; hypothetical protein complement(237592..238560) Delftia acidovorans SPH-1 5745746 YP_001561242.1 CDS Daci_0211 NC_010002.1 238881 240185 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: aav:Aave_0188 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase complement(238881..240185) Delftia acidovorans SPH-1 5745747 YP_001561243.1 CDS Daci_0212 NC_010002.1 240362 241180 D KEGG: reh:H16_B1174 hypothetical protein; hypothetical protein 240362..241180 Delftia acidovorans SPH-1 5745748 YP_001561244.1 CDS Daci_0213 NC_010002.1 241205 242077 R PFAM: protein of unknown function DUF344; KEGG: aav:Aave_0190 protein of unknown function DUF344; hypothetical protein complement(241205..242077) Delftia acidovorans SPH-1 5745749 YP_001561245.1 CDS Daci_0214 NC_010002.1 242106 242519 R hypothetical protein complement(242106..242519) Delftia acidovorans SPH-1 5745750 YP_001561246.1 CDS Daci_0215 NC_010002.1 242516 244165 R KEGG: rso:RS01899 probable hemagglutinin-related transmembrane protein; putative hemagglutinin-like transmembrane protein complement(242516..244165) Delftia acidovorans SPH-1 5745751 YP_001561247.1 CDS Daci_0216 NC_010002.1 244318 245229 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0137 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(244318..245229) Delftia acidovorans SPH-1 5745752 YP_001561248.1 CDS Daci_0217 NC_010002.1 245304 245798 D PFAM: transmembrane pair domain protein; KEGG: ajs:Ajs_0138 transmembrane pair domain protein; transmembrane pair domain-containing protein 245304..245798 Delftia acidovorans SPH-1 5745753 YP_001561249.1 CDS Daci_0218 NC_010002.1 245771 246790 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pol:Bpro_0562 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(245771..246790) Delftia acidovorans SPH-1 5745754 YP_001561250.1 CDS Daci_0219 NC_010002.1 246783 250283 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0563 periplasmic sensor hybrid histidine kinase; histidine kinase complement(246783..250283) Delftia acidovorans SPH-1 5745755 YP_001561251.1 CDS Daci_0220 NC_010002.1 250498 251763 D TIGRFAM: urea ABC transporter, urea binding protein; KEGG: mpt:Mpe_A3587 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea-binding protein 250498..251763 Delftia acidovorans SPH-1 5745756 YP_001561252.1 CDS Daci_0221 NC_010002.1 251874 252788 D TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3588 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtB 251874..252788 Delftia acidovorans SPH-1 5745757 YP_001561253.1 CDS Daci_0222 NC_010002.1 252860 254050 D TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A3589 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtC 252860..254050 Delftia acidovorans SPH-1 5745758 YP_001561254.1 CDS Daci_0223 NC_010002.1 254070 254813 D TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: mpt:Mpe_A3590 branched-chain amino acid ABC transporter, ATP-binding protein; urea ABC transporter ATP-binding protein UrtD 254070..254813 Delftia acidovorans SPH-1 5745759 YP_001561255.1 CDS Daci_0224 NC_010002.1 254834 255523 D KEGG: mpt:Mpe_A3591 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 254834..255523 Delftia acidovorans SPH-1 5745760 YP_001561256.1 CDS Daci_0225 NC_010002.1 255560 256789 D PFAM: Acetamidase/Formamidase; KEGG: bxe:Bxe_B1706 formamidase (FmdA); formamidase 255560..256789 Delftia acidovorans SPH-1 5745761 YP_001561257.1 CDS Daci_0226 NC_010002.1 256836 257195 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mpt:Mpe_A3593 regulatory protein, putative; FmdB family regulatory protein 256836..257195 Delftia acidovorans SPH-1 5745762 YP_001561258.1 CDS Daci_0227 NC_010002.1 257266 258012 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2106 probable amino-acid ATP-binding ABC transporter protein; ABC transporter-like protein complement(257266..258012) Delftia acidovorans SPH-1 5745763 YP_001561259.1 CDS Daci_0228 NC_010002.1 257999 258652 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_0209 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein complement(257999..258652) Delftia acidovorans SPH-1 5745764 YP_001561260.1 CDS Daci_0229 NC_010002.1 258649 259377 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2104 probable amino-acid transmembrane ABC transporter protein; polar amino acid ABC transporter inner membrane protein complement(258649..259377) Delftia acidovorans SPH-1 5745765 YP_001561261.1 CDS Daci_0230 NC_010002.1 259409 260215 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: aav:Aave_0211 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(259409..260215) Delftia acidovorans SPH-1 5745766 YP_001561262.1 CDS Daci_0231 NC_010002.1 260212 261018 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rso:RSc2102 probable transcription regulator protein; GntR family transcriptional regulator complement(260212..261018) Delftia acidovorans SPH-1 5745767 YP_001561263.1 CDS Daci_0232 NC_010002.1 261450 264206 D KEGG: aav:Aave_0214 methionine synthase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; methionine synthase 261450..264206 Delftia acidovorans SPH-1 5745768 YP_001561264.1 CDS Daci_0233 NC_010002.1 264389 264733 R KEGG: bov:BOV_A0145 hypothetical protein; hypothetical protein complement(264389..264733) Delftia acidovorans SPH-1 5745769 YP_001561265.1 CDS Daci_0234 NC_010002.1 264762 265268 R KEGG: bpa:BPP0722 hypothetical protein; hypothetical protein complement(264762..265268) Delftia acidovorans SPH-1 5745770 YP_001561266.1 CDS Daci_0235 NC_010002.1 265592 266950 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(265592..266950) Delftia acidovorans SPH-1 5745771 YP_001561267.1 CDS Daci_0236 NC_010002.1 267107 267793 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aav:Aave_1099 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(267107..267793) Delftia acidovorans SPH-1 5745772 YP_001561268.1 CDS Daci_0237 NC_010002.1 267790 269133 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(267790..269133) Delftia acidovorans SPH-1 5745773 YP_001561269.1 CDS Daci_0238 NC_010002.1 269452 270765 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr0239 probable citrate-proton symporter; major facilitator transporter complement(269452..270765) Delftia acidovorans SPH-1 5745774 YP_001561270.1 CDS Daci_0239 NC_010002.1 270807 272093 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 270807..272093 Delftia acidovorans SPH-1 5745775 YP_001561271.1 CDS Daci_0240 NC_010002.1 272174 272587 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: rfr:Rfer_3747 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 272174..272587 Delftia acidovorans SPH-1 5745776 YP_001561272.1 CDS Daci_0241 NC_010002.1 272590 273621 D hypothetical protein 272590..273621 Delftia acidovorans SPH-1 5745777 YP_001561273.1 CDS Daci_0242 NC_010002.1 273618 274253 R PFAM: pseudouridine synthase; KEGG: ajs:Ajs_2497 pseudouridine synthase; pseudouridine synthase complement(273618..274253) Delftia acidovorans SPH-1 5745778 YP_001561274.1 CDS Daci_0243 NC_010002.1 274258 275166 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpd:BURPS668_0024 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(274258..275166) Delftia acidovorans SPH-1 5745779 YP_001561275.1 CDS Daci_0244 NC_010002.1 275243 275716 D PFAM: LrgA family protein; KEGG: cvi:CV_1151 probable murein hydrolase exporter; LrgA family protein 275243..275716 Delftia acidovorans SPH-1 5745780 YP_001561276.1 CDS Daci_0245 NC_010002.1 275722 276414 D PFAM: LrgB family protein; KEGG: spe:Spro_4427 LrgB family protein; LrgB family protein 275722..276414 Delftia acidovorans SPH-1 5745781 YP_001561277.1 CDS Daci_0246 NC_010002.1 277305 277619 D KEGG: rso:RSc1866 hypothetical protein; hypothetical protein 277305..277619 Delftia acidovorans SPH-1 5745782 YP_001561278.1 CDS Daci_0247 NC_010002.1 277724 279172 R PFAM: Aldehyde Dehydrogenase_; KEGG: ajs:Ajs_1126 aldehyde dehydrogenase; aldehyde dehydrogenase complement(277724..279172) Delftia acidovorans SPH-1 5745783 YP_001561279.1 CDS Daci_0248 NC_010002.1 279209 280546 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1990 glucarate dehydratase; glucarate dehydratase complement(279209..280546) Delftia acidovorans SPH-1 5745784 YP_001561280.1 CDS Daci_0249 NC_010002.1 280591 281577 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(280591..281577) Delftia acidovorans SPH-1 5745785 YP_001561281.1 CDS Daci_0250 NC_010002.1 281683 282642 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1992 uncharacterized protein UPF0065; hypothetical protein complement(281683..282642) Delftia acidovorans SPH-1 5745786 YP_001561282.1 CDS Daci_0251 NC_010002.1 282701 283612 R catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase complement(282701..283612) Delftia acidovorans SPH-1 5745787 YP_001561283.1 CDS Daci_0252 NC_010002.1 283659 284636 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_2588 uncharacterized protein UPF0065; hypothetical protein complement(283659..284636) Delftia acidovorans SPH-1 5745788 YP_001561284.1 CDS Daci_0253 NC_010002.1 284785 285573 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_1995 GntR domain protein; GntR family transcriptional regulator complement(284785..285573) Delftia acidovorans SPH-1 5745789 YP_001561285.1 CDS Daci_0254 NC_010002.1 285656 286972 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1996 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 285656..286972 Delftia acidovorans SPH-1 5745790 YP_001561286.1 CDS Daci_0255 NC_010002.1 287023 288021 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1997 uncharacterized protein UPF0065; hypothetical protein 287023..288021 Delftia acidovorans SPH-1 5745791 YP_001561287.1 CDS Daci_0256 NC_010002.1 288195 289760 D KEGG: ajs:Ajs_1998 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 288195..289760 Delftia acidovorans SPH-1 5745792 YP_001561288.1 CDS Daci_0257 NC_010002.1 289777 290829 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase; gluconolactonase 289777..290829 Delftia acidovorans SPH-1 5745793 YP_001561289.1 CDS Daci_0258 NC_010002.1 290899 291894 D PFAM: ribonuclease BN; KEGG: aav:Aave_0221 ribonuclease BN; ribonuclease BN 290899..291894 Delftia acidovorans SPH-1 5745794 YP_001561290.1 CDS Daci_0259 NC_010002.1 291965 292957 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3911 transcriptional regulator, LysR family; LysR family transcriptional regulator 291965..292957 Delftia acidovorans SPH-1 5745795 YP_001561291.1 CDS Daci_0260 NC_010002.1 293194 294057 D PFAM: inner-membrane translocator; KEGG: reh:H16_B2037 ABC-type transporter, permease component: HAAT family; inner-membrane translocator 293194..294057 Delftia acidovorans SPH-1 5745796 YP_001561292.1 CDS Daci_0261 NC_010002.1 294058 295032 D PFAM: inner-membrane translocator; KEGG: reh:H16_B2038 ABC-type transporter, permease component: HAAT family; inner-membrane translocator 294058..295032 Delftia acidovorans SPH-1 5745797 YP_001561293.1 CDS Daci_0262 NC_010002.1 295019 295783 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B3658 ABC transporter related; ABC transporter-like protein 295019..295783 Delftia acidovorans SPH-1 5745798 YP_001561294.1 CDS Daci_0263 NC_010002.1 295770 296477 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B2040 ABC-type transporter, ATPase component: HAAT family; ABC transporter-like protein 295770..296477 Delftia acidovorans SPH-1 5745799 YP_001561295.1 CDS Daci_0264 NC_010002.1 296655 297830 D PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_3976 extracellular ligand-binding receptor; extracellular ligand-binding receptor 296655..297830 Delftia acidovorans SPH-1 5745800 YP_001561296.1 CDS Daci_0265 NC_010002.1 297871 298209 R KEGG: xft:PD0997 hypothetical protein; hypothetical protein complement(297871..298209) Delftia acidovorans SPH-1 5745801 YP_001561297.1 CDS Daci_0266 NC_010002.1 298329 299102 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1763 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(298329..299102) Delftia acidovorans SPH-1 5745802 YP_001561298.1 CDS Daci_0267 NC_010002.1 299247 300053 R PFAM: regulatory protein IclR; KEGG: reh:H16_A2948 transcriptional regulator, IclR-family; IclR family transcriptional regulator complement(299247..300053) Delftia acidovorans SPH-1 5745803 YP_001561299.1 CDS Daci_0268 NC_010002.1 300098 300871 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; oxidoreductase FAD-binding subunit complement(300098..300871) Delftia acidovorans SPH-1 5745804 YP_001561300.1 CDS Daci_0269 NC_010002.1 301132 302145 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(301132..302145) Delftia acidovorans SPH-1 5745805 YP_001561301.1 CDS Daci_0270 NC_010002.1 302161 302952 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0159 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 302161..302952 Delftia acidovorans SPH-1 5745806 YP_001561302.1 CDS Daci_0271 NC_010002.1 302970 303251 R KEGG: pfo:Pfl_0928 hypothetical protein; hypothetical protein complement(302970..303251) Delftia acidovorans SPH-1 5745807 YP_001561303.1 CDS Daci_0272 NC_010002.1 303248 304975 R PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_3524 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein complement(303248..304975) Delftia acidovorans SPH-1 5745808 YP_001561304.1 CDS Daci_0273 NC_010002.1 304972 305298 R KEGG: rpc:RPC_2857 hypothetical protein; hypothetical protein complement(304972..305298) Delftia acidovorans SPH-1 5745809 YP_001561305.1 CDS Daci_0274 NC_010002.1 305443 306303 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_4138 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(305443..306303) Delftia acidovorans SPH-1 5745810 YP_001561306.1 CDS Daci_0275 NC_010002.1 306334 307014 D KEGG: vei:Veis_4137 hypothetical protein; hypothetical protein 306334..307014 Delftia acidovorans SPH-1 5745811 YP_001561307.1 CDS Daci_0276 NC_010002.1 307146 308717 D PFAM: Rhodanese domain protein; KEGG: vei:Veis_4136 rhodanese domain protein; rhodanese domain-containing protein 307146..308717 Delftia acidovorans SPH-1 5745812 YP_001561308.1 CDS Daci_0277 NC_010002.1 308911 309909 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_4135 uncharacterized protein UPF0065; hypothetical protein 308911..309909 Delftia acidovorans SPH-1 5745813 YP_001561309.1 CDS Daci_0278 NC_010002.1 309909 311126 D TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: vei:Veis_4134 cystathionine beta-lyase; cystathionine beta-lyase 309909..311126 Delftia acidovorans SPH-1 5745814 YP_001561310.1 CDS Daci_0279 NC_010002.1 311140 312213 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: reu:Reut_B5128 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(311140..312213) Delftia acidovorans SPH-1 5745815 YP_001561311.1 CDS Daci_0280 NC_010002.1 312248 313435 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: mms:mma_1602 transporter of the MFS superfamily; major facilitator transporter complement(312248..313435) Delftia acidovorans SPH-1 5745816 YP_001561312.1 CDS Daci_0281 NC_010002.1 313552 314475 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_1603 transcriptional regulator, LysR family; LysR family transcriptional regulator 313552..314475 Delftia acidovorans SPH-1 5745817 YP_001561313.1 CDS Daci_0282 NC_010002.1 314479 315834 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bam:Bamb_4540 HipA domain protein; HipA domain-containing protein complement(314479..315834) Delftia acidovorans SPH-1 5745818 YP_001561314.1 CDS Daci_0283 NC_010002.1 315842 316141 R PFAM: helix-turn-helix domain protein; KEGG: bam:Bamb_4541 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(315842..316141) Delftia acidovorans SPH-1 5745819 YP_001561315.1 CDS Daci_0284 NC_010002.1 316313 317962 R KEGG: vei:Veis_3316 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(316313..317962) Delftia acidovorans SPH-1 5745820 YP_001561316.1 CDS Daci_0285 NC_010002.1 318129 319511 R KEGG: ppf:Pput_3076 hypothetical protein; hypothetical protein complement(318129..319511) Delftia acidovorans SPH-1 5745821 YP_001561317.1 CDS Daci_0286 NC_010002.1 319513 319938 R KEGG: ppf:Pput_3075 hypothetical protein; hypothetical protein complement(319513..319938) Delftia acidovorans SPH-1 5745822 YP_001561318.1 CDS Daci_0287 NC_010002.1 319980 321269 R TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bch:Bcen2424_3505 hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative complement(319980..321269) Delftia acidovorans SPH-1 5745823 YP_001561319.1 CDS Daci_0288 NC_010002.1 321388 322794 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bch:Bcen2424_3504 transcriptional regulator, GntR family; transcriptional regulator 321388..322794 Delftia acidovorans SPH-1 5745824 YP_001561320.1 CDS Daci_0289 NC_010002.1 322782 323801 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B1032 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(322782..323801) Delftia acidovorans SPH-1 5745825 YP_001561321.1 CDS Daci_0290 NC_010002.1 323988 325301 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1492 major facilitator superfamily MFS_1; major facilitator transporter 323988..325301 Delftia acidovorans SPH-1 5745826 YP_001561322.1 CDS Daci_0291 NC_010002.1 325307 326518 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_1493 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 325307..326518 Delftia acidovorans SPH-1 5745827 YP_001561323.1 CDS Daci_0292 NC_010002.1 326530 327339 D PFAM: HpcH/HpaI aldolase; KEGG: csa:Csal_2517 2-dehydro-3-deoxyglucarate aldolase; 2-dehydro-3-deoxyglucarate aldolase 326530..327339 Delftia acidovorans SPH-1 5745828 YP_001561324.1 CDS Daci_0293 NC_010002.1 327356 328789 D PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A0361 lactaldehyde dehydrogenase; aldehyde dehydrogenase 327356..328789 Delftia acidovorans SPH-1 5745829 YP_001561325.1 CDS Daci_0294 NC_010002.1 328811 329326 R PFAM: regulatory protein MarR; KEGG: aav:Aave_4468 transcriptional regulator, TrmB; MarR family transcriptional regulator complement(328811..329326) Delftia acidovorans SPH-1 5745830 YP_001561326.1 CDS Daci_0295 NC_010002.1 329429 330406 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B0482 probable extra-cytoplasmic solute receptor; hypothetical protein 329429..330406 Delftia acidovorans SPH-1 5745831 YP_001561327.1 CDS Daci_0296 NC_010002.1 330492 331820 D PFAM: sulfatase; KEGG: aav:Aave_4466 sulfatase; sulfatase 330492..331820 Delftia acidovorans SPH-1 5745832 YP_001561328.1 CDS Daci_0297 NC_010002.1 331889 332752 R KEGG: sse:Ssed_0851 hypothetical protein; hypothetical protein complement(331889..332752) Delftia acidovorans SPH-1 5745833 YP_001561329.1 CDS Daci_0298 NC_010002.1 333618 333899 R KEGG: rso:RS06029 hypothetical protein; hypothetical protein complement(333618..333899) Delftia acidovorans SPH-1 5745834 YP_001561330.1 CDS Daci_0299 NC_010002.1 333949 338526 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_4283 YD repeat protein; YD repeat-containing protein complement(333949..338526) Delftia acidovorans SPH-1 5745835 YP_001561331.1 CDS Daci_0300 NC_010002.1 338605 340989 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: aav:Aave_2735 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(338605..340989) Delftia acidovorans SPH-1 5745836 YP_001561332.1 CDS Daci_0301 NC_010002.1 341464 342195 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0162 hypothetical protein; hypothetical protein 341464..342195 Delftia acidovorans SPH-1 5745837 YP_001561333.1 CDS Daci_0302 NC_010002.1 342219 342557 D PFAM: nitrogen regulatory protein P-II; KEGG: pna:Pnap_0120 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 342219..342557 Delftia acidovorans SPH-1 5745838 YP_001561334.1 CDS Daci_0303 NC_010002.1 342589 343962 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ajs:Ajs_0164 ammonium transporter; ammonium transporter 342589..343962 Delftia acidovorans SPH-1 5745839 YP_001561335.1 CDS Daci_0304 NC_010002.1 344041 345309 D PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3312 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 344041..345309 Delftia acidovorans SPH-1 5745840 YP_001561336.1 CDS Daci_0305 NC_010002.1 345335 346117 D PFAM: protein of unknown function DUF1275; KEGG: ajs:Ajs_0167 protein of unknown function DUF1275; hypothetical protein 345335..346117 Delftia acidovorans SPH-1 5745841 YP_001561337.1 CDS glcF NC_010002.1 346179 347429 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit 346179..347429 Delftia acidovorans SPH-1 5745842 YP_001561338.1 CDS Daci_0307 NC_010002.1 347514 348380 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 347514..348380 Delftia acidovorans SPH-1 5745843 YP_001561339.1 CDS Daci_0308 NC_010002.1 348610 349188 D PFAM: AmiS/UreI transporter; KEGG: har:HEAR1450 putative transporter protein AmiS; AmiS/UreI transporter 348610..349188 Delftia acidovorans SPH-1 5745844 YP_001561340.1 CDS Daci_0309 NC_010002.1 349216 350115 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0174 protein of unknown function DUF6, transmembrane; hypothetical protein complement(349216..350115) Delftia acidovorans SPH-1 5745845 YP_001561341.1 CDS Daci_0310 NC_010002.1 350314 351615 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0175 major facilitator superfamily MFS_1; lysophospholipid transporter LplT complement(350314..351615) Delftia acidovorans SPH-1 5745846 YP_001561342.1 CDS Daci_0311 NC_010002.1 351750 352853 D KEGG: ajs:Ajs_0176 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 351750..352853 Delftia acidovorans SPH-1 5745847 YP_001561343.1 CDS Daci_0312 NC_010002.1 352854 353294 R PFAM: regulatory protein MarR; KEGG: sit:TM1040_1546 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(352854..353294) Delftia acidovorans SPH-1 5745848 YP_001561344.1 CDS Daci_0313 NC_010002.1 353391 354203 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: reh:H16_B1184 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 353391..354203 Delftia acidovorans SPH-1 5745849 YP_001561345.1 CDS Daci_0314 NC_010002.1 354447 355877 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 354447..355877 Delftia acidovorans SPH-1 5745851 YP_001561346.1 CDS Daci_0315 NC_010002.1 355957 356394 D KEGG: aav:Aave_0263 hypothetical protein; hypothetical protein 355957..356394 Delftia acidovorans SPH-1 5745852 YP_001561347.1 CDS Daci_0316 NC_010002.1 356439 357377 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 356439..357377 Delftia acidovorans SPH-1 5745853 YP_001561348.1 CDS Daci_0317 NC_010002.1 357413 357622 D KEGG: aav:Aave_0265 hypothetical protein; hypothetical protein 357413..357622 Delftia acidovorans SPH-1 5745854 YP_001561349.1 CDS Daci_0318 NC_010002.1 357654 358598 R KEGG: aav:Aave_0266 hypothetical protein; hypothetical protein complement(357654..358598) Delftia acidovorans SPH-1 5745855 YP_001561350.1 CDS Daci_0319 NC_010002.1 358652 359920 D PFAM: O-antigen polymerase; KEGG: aav:Aave_0267 O-antigen polymerase; O-antigen polymerase 358652..359920 Delftia acidovorans SPH-1 5745856 YP_001561351.1 CDS Daci_0320 NC_010002.1 359917 361038 D PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1; glycosyl transferase group 1 protein 359917..361038 Delftia acidovorans SPH-1 5745857 YP_001561352.1 CDS Daci_0321 NC_010002.1 361035 362063 D PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0186 glycosyl transferase, family 2; glycosyl transferase family protein 361035..362063 Delftia acidovorans SPH-1 5745858 YP_001561353.1 CDS Daci_0322 NC_010002.1 362060 363013 D KEGG: aav:Aave_0270 mannosyltransferase OCH1-related enzyme; mannosyltransferase OCH1-like enzyme 362060..363013 Delftia acidovorans SPH-1 5745859 YP_001561354.1 CDS Daci_0323 NC_010002.1 363036 363455 R KEGG: pen:PSEEN3249 hypothetical protein; hypothetical protein complement(363036..363455) Delftia acidovorans SPH-1 5745860 YP_001561355.1 CDS Daci_0324 NC_010002.1 363427 364815 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3248 transporter, MFS family; major facilitator transporter complement(363427..364815) Delftia acidovorans SPH-1 5745861 YP_001561356.1 CDS Daci_0325 NC_010002.1 364905 365816 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3247 transcriptional regulator, LysR family; LysR family transcriptional regulator 364905..365816 Delftia acidovorans SPH-1 5745862 YP_001561357.1 CDS Daci_0326 NC_010002.1 366191 366628 D hypothetical protein 366191..366628 Delftia acidovorans SPH-1 5745863 YP_001561358.1 CDS Daci_0327 NC_010002.1 366644 367870 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0193 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(366644..367870) Delftia acidovorans SPH-1 5745864 YP_001561359.1 CDS Daci_0328 NC_010002.1 367878 368636 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_0194 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(367878..368636) Delftia acidovorans SPH-1 5745865 YP_001561360.1 CDS Daci_0329 NC_010002.1 368741 370177 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0276 major facilitator superfamily MFS_1; major facilitator transporter complement(368741..370177) Delftia acidovorans SPH-1 5745866 YP_001561361.1 CDS Daci_0330 NC_010002.1 370198 370926 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_0200 cupin 2, conserved barrel domain protein; AraC family transcriptional regulator 370198..370926 Delftia acidovorans SPH-1 5745867 YP_001561362.1 CDS Daci_0331 NC_010002.1 370999 371970 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 protein of unknown function DUF6, transmembrane; hypothetical protein 370999..371970 Delftia acidovorans SPH-1 5745868 YP_001561363.1 CDS Daci_0332 NC_010002.1 372016 372933 D PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_0280 peptidase M48, Ste24p; peptidase M48 Ste24p 372016..372933 Delftia acidovorans SPH-1 5745869 YP_001561364.1 CDS Daci_0333 NC_010002.1 372944 374401 R PFAM: Aldehyde Dehydrogenase_; KEGG: pla:Plav_1859 aldehyde dehydrogenase; aldehyde dehydrogenase complement(372944..374401) Delftia acidovorans SPH-1 5745870 YP_001561365.1 CDS Daci_0334 NC_010002.1 374517 375155 R PFAM: beta-lactamase domain protein; KEGG: aav:Aave_0282 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(374517..375155) Delftia acidovorans SPH-1 5745871 YP_001561366.1 CDS Daci_0335 NC_010002.1 375241 375471 R KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein complement(375241..375471) Delftia acidovorans SPH-1 5745872 YP_001561367.1 CDS Daci_0336 NC_010002.1 375801 376916 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ajs:Ajs_3954 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase 375801..376916 Delftia acidovorans SPH-1 5745873 YP_001561368.1 CDS Daci_0337 NC_010002.1 376918 377262 D KEGG: ajs:Ajs_3952 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 376918..377262 Delftia acidovorans SPH-1 5745874 YP_001561369.1 CDS Daci_0338 NC_010002.1 377259 378683 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: mpt:Mpe_A3571 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 377259..378683 Delftia acidovorans SPH-1 5745875 YP_001561370.1 CDS Daci_0339 NC_010002.1 378736 379539 R KEGG: aav:Aave_0288 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(378736..379539) Delftia acidovorans SPH-1 5745876 YP_001561371.1 CDS pyrE NC_010002.1 379556 380251 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 379556..380251 Delftia acidovorans SPH-1 5745877 YP_001561372.1 CDS Daci_0341 NC_010002.1 380259 380927 D KEGG: aav:Aave_0290 hypothetical protein; hypothetical protein 380259..380927 Delftia acidovorans SPH-1 5745878 YP_001561373.1 CDS Daci_0342 NC_010002.1 381139 383745 D TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: aav:Aave_0411 pyrrolo-quinoline quinone; PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 381139..383745 Delftia acidovorans SPH-1 5745879 YP_001561374.1 CDS Daci_0343 NC_010002.1 383776 384264 R hypothetical protein complement(383776..384264) Delftia acidovorans SPH-1 5745880 YP_001561375.1 CDS Daci_0344 NC_010002.1 384284 384499 D hypothetical protein 384284..384499 Delftia acidovorans SPH-1 5745881 YP_001561376.1 CDS Daci_0345 NC_010002.1 384565 385203 R PFAM: nitroreductase; KEGG: psb:Psyr_1566 nitroreductase; nitroreductase complement(384565..385203) Delftia acidovorans SPH-1 5745882 YP_001561377.1 CDS Daci_0346 NC_010002.1 385178 386140 R hypothetical protein complement(385178..386140) Delftia acidovorans SPH-1 5745883 YP_001561378.1 CDS Daci_0347 NC_010002.1 386499 387728 D PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: aav:Aave_3649 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 386499..387728 Delftia acidovorans SPH-1 5745884 YP_001561379.1 CDS Daci_0348 NC_010002.1 387793 389055 R PFAM: CBS domain containing protein; HPP family protein?; KEGG: rsh:Rsph17029_2488 CBS domain containing protein; hypothetical protein complement(387793..389055) Delftia acidovorans SPH-1 5745885 YP_001561380.1 CDS Daci_0349 NC_010002.1 389093 390316 R PFAM: beta-lactamase; KEGG: rpb:RPB_2265 beta-lactamase; beta-lactamase complement(389093..390316) Delftia acidovorans SPH-1 5745886 YP_001561381.1 CDS Daci_0350 NC_010002.1 390405 391415 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_2466 uncharacterized protein UPF0065; hypothetical protein 390405..391415 Delftia acidovorans SPH-1 5745887 YP_001561382.1 CDS Daci_0351 NC_010002.1 391461 392906 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: ajs:Ajs_0236 glutamyl-tRNA(Gln) amidotransferase, B subunit; glutamyl-tRNA(Gln) amidotransferase subunit B complement(391461..392906) Delftia acidovorans SPH-1 5745888 YP_001561383.1 CDS gatA NC_010002.1 392913 394409 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(392913..394409) Delftia acidovorans SPH-1 5745889 YP_001561384.1 CDS gatC NC_010002.1 394462 394761 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(394462..394761) Delftia acidovorans SPH-1 5745890 YP_001561385.1 CDS Daci_0354 NC_010002.1 394974 396017 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 394974..396017 Delftia acidovorans SPH-1 5745891 YP_001561386.1 CDS Daci_0355 NC_010002.1 396202 397272 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: aav:Aave_0295 rod shape-determining protein MreC; rod shape-determining protein MreC 396202..397272 Delftia acidovorans SPH-1 5745892 YP_001561387.1 CDS Daci_0356 NC_010002.1 397269 397787 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: vei:Veis_1608 putative rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD 397269..397787 Delftia acidovorans SPH-1 5745893 YP_001561388.1 CDS Daci_0357 NC_010002.1 397801 399846 D KEGG: ajs:Ajs_0242 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 397801..399846 Delftia acidovorans SPH-1 5745894 YP_001561389.1 CDS Daci_0358 NC_010002.1 399915 400673 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0244 ABC transporter related; ABC transporter-like protein complement(399915..400673) Delftia acidovorans SPH-1 5745895 YP_001561390.1 CDS Daci_0359 NC_010002.1 400670 401452 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0245 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein complement(400670..401452) Delftia acidovorans SPH-1 5745896 YP_001561391.1 CDS Daci_0360 NC_010002.1 401518 402288 R PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_0301 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(401518..402288) Delftia acidovorans SPH-1 5745897 YP_001561392.1 CDS Daci_0361 NC_010002.1 402540 403298 R PFAM: protein of unknown function DUF81; KEGG: ajs:Ajs_0248 protein of unknown function DUF81; hypothetical protein complement(402540..403298) Delftia acidovorans SPH-1 5745898 YP_001561393.1 CDS Daci_0362 NC_010002.1 403596 404597 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reh:H16_B0517 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase complement(403596..404597) Delftia acidovorans SPH-1 5745899 YP_001561394.1 CDS Daci_0363 NC_010002.1 404724 405647 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0516 transcriptional regulator, LysR-family; LysR family transcriptional regulator 404724..405647 Delftia acidovorans SPH-1 5745900 YP_001561395.1 CDS Daci_0364 NC_010002.1 405644 407500 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: aav:Aave_0305 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(405644..407500) Delftia acidovorans SPH-1 5745901 YP_001561396.1 CDS Daci_0365 NC_010002.1 407693 408823 D PFAM: protein of unknown function DUF140; KEGG: vei:Veis_0920 protein of unknown function DUF140; hypothetical protein 407693..408823 Delftia acidovorans SPH-1 5745902 YP_001561397.1 CDS Daci_0366 NC_010002.1 408823 409626 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_0307 ABC transporter-related protein; ABC transporter-like protein 408823..409626 Delftia acidovorans SPH-1 5745903 YP_001561398.1 CDS Daci_0367 NC_010002.1 409826 410788 D PFAM: Mammalian cell entry related domain protein; KEGG: vei:Veis_0922 mammalian cell entry related domain protein; hypothetical protein 409826..410788 Delftia acidovorans SPH-1 5745904 YP_001561399.1 CDS Daci_0368 NC_010002.1 410803 411471 D KEGG: ajs:Ajs_0253 putative lipoprotein; putative lipoprotein 410803..411471 Delftia acidovorans SPH-1 5745905 YP_001561400.1 CDS Daci_0369 NC_010002.1 412129 412347 D PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; CsbD family protein 412129..412347 Delftia acidovorans SPH-1 5745906 YP_001561401.1 CDS Daci_0370 NC_010002.1 412492 413079 D KEGG: ajs:Ajs_0255 hypothetical protein; hypothetical protein 412492..413079 Delftia acidovorans SPH-1 5745907 YP_001561402.1 CDS Daci_0371 NC_010002.1 413326 413826 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pna:Pnap_1243 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein 413326..413826 Delftia acidovorans SPH-1 5745908 YP_001561403.1 CDS Daci_0372 NC_010002.1 413870 414517 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: aav:Aave_0319 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein complement(413870..414517) Delftia acidovorans SPH-1 5745909 YP_001561404.1 CDS Daci_0373 NC_010002.1 414707 415399 D PFAM: dienelactone hydrolase; KEGG: ajs:Ajs_0260 carboxymethylenebutenolidase; carboxymethylenebutenolidase 414707..415399 Delftia acidovorans SPH-1 5745910 YP_001561405.1 CDS Daci_0374 NC_010002.1 415400 415717 R hypothetical protein complement(415400..415717) Delftia acidovorans SPH-1 5745911 YP_001561406.1 CDS Daci_0375 NC_010002.1 416080 416724 R KEGG: pol:Bpro_1655 hypothetical protein; hypothetical protein complement(416080..416724) Delftia acidovorans SPH-1 5745912 YP_001561407.1 CDS Daci_0376 NC_010002.1 416721 419333 R KEGG: nha:Nham_3087 outer membrane autotransporter barrel; hypothetical protein complement(416721..419333) Delftia acidovorans SPH-1 5745913 YP_001561408.1 CDS Daci_0377 NC_010002.1 419553 420290 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pna:Pnap_4084 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 419553..420290 Delftia acidovorans SPH-1 5745914 YP_001561409.1 CDS Daci_0378 NC_010002.1 420310 422268 D PFAM: ATP-binding region ATPase domain protein; KEGG: pna:Pnap_4085 integral membrane sensor signal transduction histidine kinase; putative signal transduction histidine kinase 420310..422268 Delftia acidovorans SPH-1 5745915 YP_001561410.1 CDS Daci_0379 NC_010002.1 422265 423458 R PFAM: Mg2 transporter protein CorA family protein; KEGG: aav:Aave_0326 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein complement(422265..423458) Delftia acidovorans SPH-1 5745916 YP_001561411.1 CDS Daci_0380 NC_010002.1 423463 424530 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(423463..424530) Delftia acidovorans SPH-1 5745917 YP_001561412.1 CDS Daci_0381 NC_010002.1 424594 425022 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0268 conserved hypothetical protein 701; hypothetical protein 424594..425022 Delftia acidovorans SPH-1 5745918 YP_001561413.1 CDS Daci_0382 NC_010002.1 425054 426187 D PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein; VanZ family protein 425054..426187 Delftia acidovorans SPH-1 5745919 YP_001561414.1 CDS Daci_0383 NC_010002.1 426198 426572 D KEGG: ajs:Ajs_0270 ferredoxin-like protein; ferredoxin-like protein 426198..426572 Delftia acidovorans SPH-1 5745920 YP_001561415.1 CDS Daci_0384 NC_010002.1 426653 427288 D KEGG: ajs:Ajs_0271 putative transmembrane protein; putative transmembrane protein 426653..427288 Delftia acidovorans SPH-1 5745921 YP_001561416.1 CDS Daci_0385 NC_010002.1 427381 428550 D PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: aav:Aave_0332 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 427381..428550 Delftia acidovorans SPH-1 5745922 YP_001561417.1 CDS rpsL NC_010002.1 428708 429085 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 428708..429085 Delftia acidovorans SPH-1 5745923 YP_001561418.1 CDS Daci_0387 NC_010002.1 429246 429719 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 429246..429719 Delftia acidovorans SPH-1 5745924 YP_001561419.1 CDS Daci_0388 NC_010002.1 429868 431976 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 429868..431976 Delftia acidovorans SPH-1 5745925 YP_001561420.1 CDS Daci_0389 NC_010002.1 432152 433342 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 432152..433342 Delftia acidovorans SPH-1 5745926 YP_001561421.1 CDS rpsJ NC_010002.1 433367 433678 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 433367..433678 Delftia acidovorans SPH-1 5745927 YP_001561422.1 CDS rplC NC_010002.1 433889 434563 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 433889..434563 Delftia acidovorans SPH-1 5745928 YP_001561423.1 CDS rplD NC_010002.1 434563 435183 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 434563..435183 Delftia acidovorans SPH-1 5745929 YP_001561424.1 CDS rplW NC_010002.1 435180 435494 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 435180..435494 Delftia acidovorans SPH-1 5745930 YP_001561425.1 CDS rplB NC_010002.1 435497 436321 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 435497..436321 Delftia acidovorans SPH-1 5745931 YP_001561426.1 CDS rpsS NC_010002.1 436332 436607 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 436332..436607 Delftia acidovorans SPH-1 5745932 YP_001561427.1 CDS rplV NC_010002.1 436618 436950 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 436618..436950 Delftia acidovorans SPH-1 5745933 YP_001561428.1 CDS rpsC NC_010002.1 436967 437839 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 436967..437839 Delftia acidovorans SPH-1 5745934 YP_001561429.1 CDS rplP NC_010002.1 437842 438258 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 437842..438258 Delftia acidovorans SPH-1 5745935 YP_001561430.1 CDS Daci_0399 NC_010002.1 438269 438466 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 438269..438466 Delftia acidovorans SPH-1 5745936 YP_001561431.1 CDS rpsQ NC_010002.1 438480 438749 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 438480..438749 Delftia acidovorans SPH-1 5745937 YP_001561432.1 CDS Daci_0401 NC_010002.1 438796 439374 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_0288 redoxin domain protein; redoxin domain-containing protein 438796..439374 Delftia acidovorans SPH-1 5745938 YP_001561433.1 CDS Daci_0402 NC_010002.1 439486 440076 R PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_0349 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(439486..440076) Delftia acidovorans SPH-1 5745939 YP_001561434.1 CDS Daci_0403 NC_010002.1 440043 440801 R PFAM: cytochrome B561; KEGG: ajs:Ajs_0290 cytochrome b561; cytochrome B561 complement(440043..440801) Delftia acidovorans SPH-1 5745940 YP_001561435.1 CDS Daci_0404 NC_010002.1 440966 441376 D PFAM: cytochrome c prime; KEGG: ajs:Ajs_0291 cytochrome c, class II; cytochrome c prime 440966..441376 Delftia acidovorans SPH-1 5745941 YP_001561436.1 CDS Daci_0405 NC_010002.1 441449 442060 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aav:Aave_0350 redoxin domain protein; redoxin domain-containing protein complement(441449..442060) Delftia acidovorans SPH-1 5745942 YP_001561437.1 CDS Daci_0406 NC_010002.1 442076 442693 D KEGG: ajs:Ajs_0293 hypothetical protein; hypothetical protein 442076..442693 Delftia acidovorans SPH-1 5745943 YP_001561438.1 CDS Daci_0407 NC_010002.1 442741 443280 D PFAM: PTS system fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 442741..443280 Delftia acidovorans SPH-1 5745944 YP_001561439.1 CDS Daci_0408 NC_010002.1 443249 443518 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: aav:Aave_0353 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 443249..443518 Delftia acidovorans SPH-1 5745945 YP_001561440.1 CDS Daci_0409 NC_010002.1 443636 445411 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: aav:Aave_0354 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 443636..445411 Delftia acidovorans SPH-1 5745946 YP_001561441.1 CDS Daci_0410 NC_010002.1 445806 446786 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(445806..446786) Delftia acidovorans SPH-1 5745947 YP_001561442.1 CDS Daci_0411 NC_010002.1 446797 447522 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(446797..447522) Delftia acidovorans SPH-1 5745948 YP_001561443.1 CDS Daci_0412 NC_010002.1 447519 447836 R PFAM: protein of unknown function DUF493; KEGG: aav:Aave_0364 protein of unknown function DUF493; hypothetical protein complement(447519..447836) Delftia acidovorans SPH-1 5745949 YP_001561444.1 CDS Daci_0413 NC_010002.1 448122 448604 D KEGG: ajs:Ajs_0301 putative ATP synthase protein I; putative ATP synthase protein I 448122..448604 Delftia acidovorans SPH-1 5745950 YP_001561445.1 CDS Daci_0414 NC_010002.1 448626 449489 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 448626..449489 Delftia acidovorans SPH-1 5745951 YP_001561446.1 CDS Daci_0415 NC_010002.1 449541 449789 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 449541..449789 Delftia acidovorans SPH-1 5745952 YP_001561447.1 CDS Daci_0416 NC_010002.1 449825 450295 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 449825..450295 Delftia acidovorans SPH-1 5745953 YP_001561448.1 CDS Daci_0417 NC_010002.1 450308 450847 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 450308..450847 Delftia acidovorans SPH-1 5745954 YP_001561449.1 CDS Daci_0418 NC_010002.1 450896 452449 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 450896..452449 Delftia acidovorans SPH-1 5745955 YP_001561450.1 CDS Daci_0419 NC_010002.1 452468 453340 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 452468..453340 Delftia acidovorans SPH-1 5745956 YP_001561451.1 CDS Daci_0420 NC_010002.1 453375 454784 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 453375..454784 Delftia acidovorans SPH-1 5745957 YP_001561452.1 CDS atpC NC_010002.1 454945 455361 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 454945..455361 Delftia acidovorans SPH-1 5745958 YP_001561453.1 CDS Daci_0422 NC_010002.1 455427 455687 R hypothetical protein complement(455427..455687) Delftia acidovorans SPH-1 5745959 YP_001561454.1 CDS Daci_0423 NC_010002.1 455796 456338 R PFAM: protein of unknown function DUF477; KEGG: aav:Aave_0379 protein of unknown function DUF477; hypothetical protein complement(455796..456338) Delftia acidovorans SPH-1 5745960 YP_001561455.1 CDS Daci_0424 NC_010002.1 456340 457212 R PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 protein of unknown function DUF477; hypothetical protein complement(456340..457212) Delftia acidovorans SPH-1 5745961 YP_001561456.1 CDS Daci_0425 NC_010002.1 457246 457833 R PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein; LemA family protein complement(457246..457833) Delftia acidovorans SPH-1 5745962 YP_001561457.1 CDS Daci_0426 NC_010002.1 457982 458968 D KEGG: aav:Aave_0383 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 457982..458968 Delftia acidovorans SPH-1 5745963 YP_001561458.1 CDS Daci_0427 NC_010002.1 458974 459525 D KEGG: pna:Pnap_0262 hypothetical protein; hypothetical protein 458974..459525 Delftia acidovorans SPH-1 5745964 YP_001561459.1 CDS Daci_0428 NC_010002.1 459805 460050 R KEGG: rme:Rmet_1560 hypothetical protein; hypothetical protein complement(459805..460050) Delftia acidovorans SPH-1 5745965 YP_001561460.1 CDS Daci_0429 NC_010002.1 460047 461321 R PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein; conjugation TrbI family protein complement(460047..461321) Delftia acidovorans SPH-1 5745966 YP_001561461.1 CDS Daci_0430 NC_010002.1 461324 462313 R TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein; P-type conjugative transfer protein TrbG complement(461324..462313) Delftia acidovorans SPH-1 5745967 YP_001561462.1 CDS Daci_0431 NC_010002.1 462310 463014 R PFAM: Conjugal transfer protein; KEGG: ajs:Ajs_2904 conjugal transfer protein; conjugal transfer protein TrbF complement(462310..463014) Delftia acidovorans SPH-1 5745968 YP_001561463.1 CDS Daci_0432 NC_010002.1 463033 464406 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(463033..464406) Delftia acidovorans SPH-1 5745969 YP_001561464.1 CDS Daci_0433 NC_010002.1 464403 464702 R KEGG: ajs:Ajs_2906 putative lipoprotein; putative lipoprotein complement(464403..464702) Delftia acidovorans SPH-1 5745970 YP_001561465.1 CDS Daci_0434 NC_010002.1 464715 465440 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pau:PA14_30900 TrbJ-like protein; conjugal transfer protein TrbJ complement(464715..465440) Delftia acidovorans SPH-1 5745971 YP_001561466.1 CDS Daci_0435 NC_010002.1 465437 467890 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(465437..467890) Delftia acidovorans SPH-1 5745972 YP_001561467.1 CDS Daci_0436 NC_010002.1 467906 468178 R KEGG: rme:Rmet_1552 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein complement(467906..468178) Delftia acidovorans SPH-1 5745973 YP_001561468.1 CDS Daci_0437 NC_010002.1 468175 468558 R PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(468175..468558) Delftia acidovorans SPH-1 5745974 YP_001561469.1 CDS Daci_0438 NC_010002.1 468555 469616 R TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: rme:Rmet_1550 type II secretion system protein E; P-type conjugative transfer ATPase TrbB complement(468555..469616) Delftia acidovorans SPH-1 5745975 YP_001561470.1 CDS Daci_0439 NC_010002.1 469613 470077 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein; CopG/DNA-binding domain-containing protein complement(469613..470077) Delftia acidovorans SPH-1 5745976 YP_001561471.1 CDS Daci_0440 NC_010002.1 470074 472095 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(470074..472095) Delftia acidovorans SPH-1 5745977 YP_001561472.1 CDS Daci_0441 NC_010002.1 472313 472531 R KEGG: bte:BTH_I0809 hypothetical protein; hypothetical protein complement(472313..472531) Delftia acidovorans SPH-1 5745978 YP_001561473.1 CDS Daci_0442 NC_010002.1 472554 473480 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1278 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(472554..473480) Delftia acidovorans SPH-1 5745979 YP_001561474.1 CDS Daci_0443 NC_010002.1 473628 473867 R KEGG: ajs:Ajs_2717 hypothetical protein; hypothetical protein complement(473628..473867) Delftia acidovorans SPH-1 5745980 YP_001561475.1 CDS Daci_0444 NC_010002.1 474041 474967 R PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 probable copper resistance D transmembrane protein; copper resistance D domain-containing protein complement(474041..474967) Delftia acidovorans SPH-1 5745981 YP_001561476.1 CDS Daci_0445 NC_010002.1 474972 475358 R PFAM: copper resistance protein CopC; KEGG: rme:Rmet_6114 copper resistance protein CopC; copper resistance protein CopC complement(474972..475358) Delftia acidovorans SPH-1 5745982 YP_001561477.1 CDS Daci_0446 NC_010002.1 475500 477980 R KEGG: neu:NE1216 haloacid dehalogenase/epoxide hydrolase family:E1-E2 ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase complement(475500..477980) Delftia acidovorans SPH-1 5745983 YP_001561478.1 CDS Daci_0447 NC_010002.1 478093 478365 R KEGG: pna:Pnap_4518 hypothetical protein; hypothetical protein complement(478093..478365) Delftia acidovorans SPH-1 5745984 YP_001561479.1 CDS Daci_0448 NC_010002.1 478399 478884 R PFAM: protein of unknown function DUF411; KEGG: pna:Pnap_1259 protein of unknown function DUF411; hypothetical protein complement(478399..478884) Delftia acidovorans SPH-1 5745985 YP_001561480.1 CDS Daci_0449 NC_010002.1 478922 479902 R PFAM: copper resistance B precursor; KEGG: ajs:Ajs_1234 copper resistance B precursor; copper resistance B complement(478922..479902) Delftia acidovorans SPH-1 5745986 YP_001561481.1 CDS Daci_0450 NC_010002.1 479928 481829 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_1235 copper-resistance protein, CopA family; CopA family copper resistance protein complement(479928..481829) Delftia acidovorans SPH-1 5745987 YP_001561482.1 CDS Daci_0451 NC_010002.1 482085 482777 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_1236 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 482085..482777 Delftia acidovorans SPH-1 5745988 YP_001561483.1 CDS Daci_0452 NC_010002.1 482749 484182 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: har:HEAR0537 sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions; heavy metal sensor signal transduction histidine kinase 482749..484182 Delftia acidovorans SPH-1 5745989 YP_001561484.1 CDS Daci_0453 NC_010002.1 484259 486295 R KEGG: rme:Rmet_1489 hypothetical protein; hypothetical protein complement(484259..486295) Delftia acidovorans SPH-1 5745990 YP_001561485.1 CDS Daci_0454 NC_010002.1 486690 487277 R KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein complement(486690..487277) Delftia acidovorans SPH-1 5745991 YP_001561486.1 CDS Daci_0455 NC_010002.1 487274 487831 R KEGG: rme:Rmet_1487 hypothetical protein; hypothetical protein complement(487274..487831) Delftia acidovorans SPH-1 5745992 YP_001561487.1 CDS Daci_0456 NC_010002.1 487828 488103 R KEGG: aav:Aave_0688 hypothetical protein; hypothetical protein complement(487828..488103) Delftia acidovorans SPH-1 5745993 YP_001561488.1 CDS Daci_0457 NC_010002.1 488100 488738 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(488100..488738) Delftia acidovorans SPH-1 5745994 YP_001561489.1 CDS Daci_0458 NC_010002.1 488992 489849 R KEGG: ajs:Ajs_2933 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein complement(488992..489849) Delftia acidovorans SPH-1 5745995 YP_001561490.1 CDS Daci_0459 NC_010002.1 490250 491023 R KEGG: ajs:Ajs_2651 hypothetical protein; hypothetical protein complement(490250..491023) Delftia acidovorans SPH-1 5745996 YP_001561491.1 CDS Daci_0460 NC_010002.1 491367 491714 R KEGG: rme:Rmet_1482 putative lipoprotein; putative lipoprotein complement(491367..491714) Delftia acidovorans SPH-1 5745997 YP_001561492.1 CDS Daci_0461 NC_010002.1 491931 492224 D PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1481 transcriptional regulator, XRE family; XRE family transcriptional regulator 491931..492224 Delftia acidovorans SPH-1 5745998 YP_001561493.1 CDS Daci_0462 NC_010002.1 492589 493620 R PFAM: protein of unknown function DUF736; KEGG: pau:PA14_31180 hypothetical protein; hypothetical protein complement(492589..493620) Delftia acidovorans SPH-1 5745999 YP_001561494.1 CDS Daci_0463 NC_010002.1 493694 494086 R PFAM: protein of unknown function DUF1232; KEGG: bbr:BB1021 hypothetical protein; hypothetical protein complement(493694..494086) Delftia acidovorans SPH-1 5746000 YP_001561495.1 CDS Daci_0464 NC_010002.1 494083 495036 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pde:Pden_3353 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(494083..495036) Delftia acidovorans SPH-1 5746001 YP_001561496.1 CDS Daci_0465 NC_010002.1 495083 495355 R PFAM: protein of unknown function DUF156; KEGG: pde:Pden_3352 protein of unknown function DUF156; hypothetical protein complement(495083..495355) Delftia acidovorans SPH-1 5746002 YP_001561497.1 CDS Daci_0466 NC_010002.1 495616 495825 R KEGG: rme:Rmet_3032 hypothetical protein; hypothetical protein complement(495616..495825) Delftia acidovorans SPH-1 5746003 YP_001561498.1 CDS Daci_0467 NC_010002.1 495889 497952 R PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease; nuclease complement(495889..497952) Delftia acidovorans SPH-1 5746004 YP_001561499.1 CDS Daci_0468 NC_010002.1 498017 498841 R PFAM: protein of unknown function DUF932; KEGG: ajs:Ajs_2944 protein of unknown function DUF932; hypothetical protein complement(498017..498841) Delftia acidovorans SPH-1 5746005 YP_001561500.1 CDS Daci_0469 NC_010002.1 499552 499830 R KEGG: pau:PA14_31220 hypothetical protein; hypothetical protein complement(499552..499830) Delftia acidovorans SPH-1 5746006 YP_001561501.1 CDS Daci_0470 NC_010002.1 499896 500246 R KEGG: rme:Rmet_3038 hypothetical protein; hypothetical protein complement(499896..500246) Delftia acidovorans SPH-1 5746007 YP_001561502.1 CDS Daci_0471 NC_010002.1 500712 501149 R KEGG: pol:Bpro_3490 hypothetical protein; hypothetical protein complement(500712..501149) Delftia acidovorans SPH-1 5746008 YP_001561503.1 CDS Daci_0472 NC_010002.1 501257 501673 R hypothetical protein complement(501257..501673) Delftia acidovorans SPH-1 5746009 YP_001561504.1 CDS Daci_0473 NC_010002.1 501982 505152 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3491 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(501982..505152) Delftia acidovorans SPH-1 5746010 YP_001561505.1 CDS Daci_0474 NC_010002.1 505149 506786 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3492 secretion protein HlyD; RND family efflux transporter MFP subunit complement(505149..506786) Delftia acidovorans SPH-1 5746011 YP_001561506.1 CDS Daci_0475 NC_010002.1 506807 508120 R KEGG: mpt:Mpe_A1625 putative outer membrane cation efflux protein; putative outer membrane cation efflux protein complement(506807..508120) Delftia acidovorans SPH-1 5746012 YP_001561507.1 CDS Daci_0476 NC_010002.1 508255 508728 R KEGG: rme:Rmet_5030 hypothetical protein; hypothetical protein complement(508255..508728) Delftia acidovorans SPH-1 5746013 YP_001561508.1 CDS Daci_0477 NC_010002.1 508725 509246 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: azo:azo1354 putative regulatory protein; MerR family transcriptional regulator complement(508725..509246) Delftia acidovorans SPH-1 5746014 YP_001561509.1 CDS Daci_0478 NC_010002.1 509410 509850 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: vei:Veis_2831 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(509410..509850) Delftia acidovorans SPH-1 5746015 YP_001561510.1 CDS Daci_0479 NC_010002.1 510137 512956 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pla:Plav_3390 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 510137..512956 Delftia acidovorans SPH-1 5746016 YP_001561511.1 CDS Daci_0480 NC_010002.1 512973 513452 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: pla:Plav_3391 lipoprotein signal peptidase; lipoprotein signal peptidase 512973..513452 Delftia acidovorans SPH-1 5746017 YP_001561512.1 CDS Daci_0481 NC_010002.1 513540 514343 D KEGG: cvi:CV_1327 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 513540..514343 Delftia acidovorans SPH-1 5746018 YP_001561513.1 CDS Daci_0482 NC_010002.1 514575 516524 D PFAM: cytochrome c class I; iron permease FTR1; KEGG: ajs:Ajs_1240 iron permease FTR1; iron permease FTR1 514575..516524 Delftia acidovorans SPH-1 5746019 YP_001561514.1 CDS Daci_0483 NC_010002.1 516588 518276 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1298 mercuric reductase; putative mercuric reductase complement(516588..518276) Delftia acidovorans SPH-1 5746020 YP_001561515.1 CDS Daci_0484 NC_010002.1 518288 518566 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1299 mercuric transport protein periplasmic component; mercuric transport protein periplasmic protein complement(518288..518566) Delftia acidovorans SPH-1 5746021 YP_001561516.1 CDS Daci_0485 NC_010002.1 518579 518929 R PFAM: Mercuric transport protein MerT; KEGG: ajs:Ajs_1300 mercuric transport protein MerT; putative mercuric transport protein complement(518579..518929) Delftia acidovorans SPH-1 5746022 YP_001561517.1 CDS Daci_0486 NC_010002.1 519001 519408 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ajs:Ajs_1301 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 519001..519408 Delftia acidovorans SPH-1 5746023 YP_001561518.1 CDS Daci_0487 NC_010002.1 519566 519913 D SMART: regulatory protein ArsR; KEGG: mpt:Mpe_A2347 TC repressor; ArsR family transcriptional regulator 519566..519913 Delftia acidovorans SPH-1 5746024 YP_001561519.1 CDS Daci_0488 NC_010002.1 519926 520396 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A2346 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 519926..520396 Delftia acidovorans SPH-1 5746025 YP_001561520.1 CDS Daci_0489 NC_010002.1 520409 520906 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mpt:Mpe_A2345 arsenate reductase, putative; protein tyrosine phosphatase 520409..520906 Delftia acidovorans SPH-1 5746026 YP_001561521.1 CDS Daci_0490 NC_010002.1 520917 522002 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: har:HEAR1962 arsenite efflux pump ACR3; arsenical-resistance protein 520917..522002 Delftia acidovorans SPH-1 5746027 YP_001561522.1 CDS Daci_0491 NC_010002.1 522017 522439 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: har:HEAR1960 arsenate reductase (glutaredoxin); arsenate reductase 522017..522439 Delftia acidovorans SPH-1 5746028 YP_001561523.1 CDS Daci_0492 NC_010002.1 522432 523154 D TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: ajs:Ajs_1284 NADPH-dependent FMN reductase; arsenical resistance protein ArsH 522432..523154 Delftia acidovorans SPH-1 5746029 YP_001561524.1 CDS Daci_0493 NC_010002.1 523250 523681 D hypothetical protein 523250..523681 Delftia acidovorans SPH-1 5746030 YP_001561525.1 CDS Daci_0494 NC_010002.1 523720 523911 R KEGG: ajs:Ajs_2957 putative transcriptional regulator; hypothetical protein complement(523720..523911) Delftia acidovorans SPH-1 5746031 YP_001561526.1 CDS Daci_0495 NC_010002.1 523911 524435 R KEGG: rme:Rmet_1467 prophage CP4-57 regulatory; prophage CP4-57 regulatory complement(523911..524435) Delftia acidovorans SPH-1 5746032 YP_001561527.1 CDS Daci_0496 NC_010002.1 524440 524718 R KEGG: rme:Rmet_1466 hypothetical protein; hypothetical protein complement(524440..524718) Delftia acidovorans SPH-1 5746033 YP_001561528.1 CDS Daci_0497 NC_010002.1 524894 526132 R PFAM: integrase family protein; KEGG: rme:Rmet_3045 phage integrase; integrase family protein complement(524894..526132) Delftia acidovorans SPH-1 5746034 YP_001561529.1 CDS Daci_0498 NC_010002.1 526318 526860 R PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I; class I cytochrome c complement(526318..526860) Delftia acidovorans SPH-1 5746035 YP_001561530.1 CDS Daci_0499 NC_010002.1 527079 528536 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_0387 transcriptional regulator, fis family; RND efflux system outer membrane lipoprotein complement(527079..528536) Delftia acidovorans SPH-1 5746036 YP_001561531.1 CDS Daci_0500 NC_010002.1 528529 531684 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 family protein complement(528529..531684) Delftia acidovorans SPH-1 5746037 YP_001561532.1 CDS Daci_0501 NC_010002.1 531700 532992 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_2887 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(531700..532992) Delftia acidovorans SPH-1 5746038 YP_001561533.1 CDS Daci_0502 NC_010002.1 533152 533817 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: aav:Aave_0390 transcriptional regulator, TetR family; TetR family transcriptional regulator 533152..533817 Delftia acidovorans SPH-1 5746039 YP_001561534.1 CDS Daci_0503 NC_010002.1 534475 535665 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 534475..535665 Delftia acidovorans SPH-1 5746044 YP_001561535.1 CDS secE NC_010002.1 535837 536220 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 535837..536220 Delftia acidovorans SPH-1 5746046 YP_001561536.1 CDS Daci_0505 NC_010002.1 536220 536804 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: ajs:Ajs_3902 NusG antitermination factor; NusG antitermination factor 536220..536804 Delftia acidovorans SPH-1 5746047 YP_001561537.1 CDS rplK NC_010002.1 536946 537377 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 536946..537377 Delftia acidovorans SPH-1 5746048 YP_001561538.1 CDS rplA NC_010002.1 537378 538073 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 537378..538073 Delftia acidovorans SPH-1 5746049 YP_001561539.1 CDS rplJ NC_010002.1 538300 538827 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 538300..538827 Delftia acidovorans SPH-1 5746050 YP_001561540.1 CDS rplL NC_010002.1 538865 539242 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 538865..539242 Delftia acidovorans SPH-1 5746051 YP_001561541.1 CDS rpoB NC_010002.1 539519 543631 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 539519..543631 Delftia acidovorans SPH-1 5746052 YP_001561542.1 CDS Daci_0511 NC_010002.1 543655 547884 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 543655..547884 Delftia acidovorans SPH-1 5746053 YP_001561543.1 CDS Daci_0512 NC_010002.1 547966 548649 D KEGG: aav:Aave_4529 LemA; hypothetical protein 547966..548649 Delftia acidovorans SPH-1 5746054 YP_001561544.1 CDS Daci_0513 NC_010002.1 548646 550034 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: vei:Veis_2266 sun protein; sun protein 548646..550034 Delftia acidovorans SPH-1 5746055 YP_001561545.1 CDS Daci_0514 NC_010002.1 550099 550662 D KEGG: aav:Aave_4527 putative proline rich signal peptide protein; putative proline rich signal peptide protein 550099..550662 Delftia acidovorans SPH-1 5746056 YP_001561546.1 CDS Daci_0515 NC_010002.1 550659 553001 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4526 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 550659..553001 Delftia acidovorans SPH-1 5746057 YP_001561547.1 CDS Daci_0516 NC_010002.1 553043 553714 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: aav:Aave_4525 two component transcriptional regulator, fis family; two component Fis family transcriptional regulator 553043..553714 Delftia acidovorans SPH-1 5746058 YP_001561548.1 CDS Daci_0517 NC_010002.1 553958 554287 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: mms:mma_3216 hypothetical protein; cupin complement(553958..554287) Delftia acidovorans SPH-1 5746060 YP_001561549.1 CDS Daci_0518 NC_010002.1 554572 555012 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1866 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 554572..555012 Delftia acidovorans SPH-1 5746061 YP_001561550.1 CDS Daci_0519 NC_010002.1 555009 555461 D KEGG: net:Neut_0622 protein of unknown function DUF474; hypothetical protein 555009..555461 Delftia acidovorans SPH-1 5746062 YP_001561551.1 CDS Daci_0520 NC_010002.1 555532 559056 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: pau:PA14_55690 exodeoxyribonuclease V gamma chain; exodeoxyribonuclease V subunit gamma 555532..559056 Delftia acidovorans SPH-1 5746063 YP_001561552.1 CDS Daci_0521 NC_010002.1 559053 562877 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pmy:Pmen_1986 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 559053..562877 Delftia acidovorans SPH-1 5746064 YP_001561553.1 CDS Daci_0522 NC_010002.1 562874 565081 D KEGG: pmy:Pmen_1987 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 562874..565081 Delftia acidovorans SPH-1 5746065 YP_001561554.1 CDS Daci_0523 NC_010002.1 565100 565762 R PFAM: Glutathione S-transferase domain; KEGG: vei:Veis_4930 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(565100..565762) Delftia acidovorans SPH-1 5746066 YP_001561555.1 CDS Daci_0524 NC_010002.1 565882 566241 D KEGG: ajs:Ajs_3342 hypothetical protein; hypothetical protein 565882..566241 Delftia acidovorans SPH-1 5746067 YP_001561556.1 CDS Daci_0525 NC_010002.1 566338 566850 D PFAM: protein of unknown function DUF461; KEGG: pna:Pnap_1514 protein of unknown function DUF461; hypothetical protein 566338..566850 Delftia acidovorans SPH-1 5746068 YP_001561557.1 CDS Daci_0526 NC_010002.1 566993 567949 D KEGG: ajs:Ajs_3888 hypothetical protein; hypothetical protein 566993..567949 Delftia acidovorans SPH-1 5746069 YP_001561558.1 CDS Daci_0527 NC_010002.1 568026 569261 D KEGG: aav:Aave_4508 domain of unknown function DUF1745; hypothetical protein 568026..569261 Delftia acidovorans SPH-1 5746070 YP_001561559.1 CDS Daci_0528 NC_010002.1 569285 570616 R PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_3886 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(569285..570616) Delftia acidovorans SPH-1 5746071 YP_001561560.1 CDS Daci_0529 NC_010002.1 571464 581093 D PFAM: Ig domain protein group 1 domain protein; KEGG: mmu:239611 mucin 19; Ig domain-containing protein 571464..581093 Delftia acidovorans SPH-1 5746072 YP_001561561.1 CDS Daci_0530 NC_010002.1 581400 584057 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: aav:Aave_4788 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 581400..584057 Delftia acidovorans SPH-1 5746073 YP_001561562.1 CDS Daci_0531 NC_010002.1 584210 585370 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: aav:Aave_4506 uncharacterized peroxidase-related enzyme; hypothetical protein complement(584210..585370) Delftia acidovorans SPH-1 5746074 YP_001561563.1 CDS Daci_0532 NC_010002.1 585378 586859 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aav:Aave_4505 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase complement(585378..586859) Delftia acidovorans SPH-1 5746075 YP_001561564.1 CDS Daci_0533 NC_010002.1 586925 587959 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_4503 uncharacterized protein UPF0065; hypothetical protein complement(586925..587959) Delftia acidovorans SPH-1 5746076 YP_001561565.1 CDS Daci_0534 NC_010002.1 588095 588484 R KEGG: ajs:Ajs_3882 hypothetical protein; hypothetical protein complement(588095..588484) Delftia acidovorans SPH-1 5746077 YP_001561566.1 CDS Daci_0535 NC_010002.1 588667 589407 R SMART: helix-turn-helix domain protein; KEGG: aav:Aave_4499 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(588667..589407) Delftia acidovorans SPH-1 5746078 YP_001561567.1 CDS Daci_0536 NC_010002.1 589522 590346 D KEGG: vei:Veis_1658 hypothetical protein; hypothetical protein 589522..590346 Delftia acidovorans SPH-1 5746079 YP_001561568.1 CDS Daci_0537 NC_010002.1 590358 592322 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 590358..592322 Delftia acidovorans SPH-1 5746080 YP_001561569.1 CDS Daci_0538 NC_010002.1 592319 593503 R PFAM: Saccharopine dehydrogenase; KEGG: pat:Patl_0966 saccharopine dehydrogenase; saccharopine dehydrogenase complement(592319..593503) Delftia acidovorans SPH-1 5746081 YP_001561570.1 CDS Daci_0539 NC_010002.1 593814 594287 D PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein; YiaAB two helix domain-containing protein 593814..594287 Delftia acidovorans SPH-1 5746082 YP_001561571.1 CDS Daci_0540 NC_010002.1 594325 594795 D KEGG: ajs:Ajs_3874 hypothetical protein; hypothetical protein 594325..594795 Delftia acidovorans SPH-1 5746083 YP_001561572.1 CDS Daci_0541 NC_010002.1 594804 595622 D KEGG: aav:Aave_4488 hypothetical protein; hypothetical protein 594804..595622 Delftia acidovorans SPH-1 5746084 YP_001561573.1 CDS Daci_0542 NC_010002.1 595690 596814 D KEGG: ajs:Ajs_3872 hypothetical protein; hypothetical protein 595690..596814 Delftia acidovorans SPH-1 5746085 YP_001561574.1 CDS Daci_0543 NC_010002.1 596924 598186 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rca:Rcas_2750 diguanylate cyclase; diguanylate cyclase 596924..598186 Delftia acidovorans SPH-1 5746086 YP_001561575.1 CDS Daci_0544 NC_010002.1 598230 599474 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bra:BRADO2669 conserved hypothetical protein; putative membrane protein; putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 598230..599474 Delftia acidovorans SPH-1 5746087 YP_001561576.1 CDS Daci_0545 NC_010002.1 599595 600365 D KEGG: mlo:mll7009 hypothetical protein; hypothetical protein 599595..600365 Delftia acidovorans SPH-1 5746088 YP_001561577.1 CDS Daci_0546 NC_010002.1 600395 601393 R PFAM: conserved hypothetical protein; KEGG: reh:H16_A0091 probable extra-cytoplasmic solute receptor; hypothetical protein complement(600395..601393) Delftia acidovorans SPH-1 5746089 YP_001561578.1 CDS Daci_0547 NC_010002.1 601390 602520 R KEGG: bch:Bcen2424_6217 hypothetical protein; hypothetical protein complement(601390..602520) Delftia acidovorans SPH-1 5746090 YP_001561579.1 CDS Daci_0548 NC_010002.1 602632 603582 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_6218 transcriptional regulator, LysR family; LysR family transcriptional regulator 602632..603582 Delftia acidovorans SPH-1 5746091 YP_001561580.1 CDS tgt NC_010002.1 603619 604791 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(603619..604791) Delftia acidovorans SPH-1 5746092 YP_001561581.1 CDS Daci_0550 NC_010002.1 604927 605397 D PFAM: UspA domain protein; KEGG: ajs:Ajs_3869 UspA domain protein; UspA domain-containing protein 604927..605397 Delftia acidovorans SPH-1 5746093 YP_001561582.1 CDS Daci_0551 NC_010002.1 605421 605873 R KEGG: ajs:Ajs_3868 hypothetical protein; hypothetical protein complement(605421..605873) Delftia acidovorans SPH-1 5746094 YP_001561583.1 CDS Daci_0552 NC_010002.1 606041 607261 R PFAM: phospholipase A1; KEGG: aav:Aave_4476 phospholipase A1; phospholipase A1 complement(606041..607261) Delftia acidovorans SPH-1 5746095 YP_001561584.1 CDS Daci_0553 NC_010002.1 607350 607796 R KEGG: ajs:Ajs_3866 hypothetical protein; hypothetical protein complement(607350..607796) Delftia acidovorans SPH-1 5746096 YP_001561585.1 CDS Daci_0554 NC_010002.1 607856 609973 R PFAM: UvrD/REP helicase; KEGG: ajs:Ajs_3865 UvrD/REP helicase; UvrD/REP helicase complement(607856..609973) Delftia acidovorans SPH-1 5746097 YP_001561586.1 CDS Daci_0555 NC_010002.1 610207 610953 D hypothetical protein 610207..610953 Delftia acidovorans SPH-1 5746098 YP_001561587.1 CDS Daci_0556 NC_010002.1 610950 611513 D PFAM: Miro domain protein; KEGG: dno:DNO_0146 hypothetical protein; Miro domain-containing protein 610950..611513 Delftia acidovorans SPH-1 5746099 YP_001561588.1 CDS Daci_0557 NC_010002.1 611510 611911 D KEGG: dno:DNO_0145 hypothetical protein; hypothetical protein 611510..611911 Delftia acidovorans SPH-1 5746100 YP_001561589.1 CDS Daci_0558 NC_010002.1 612011 612370 D KEGG: dno:DNO_0148 hypothetical protein; hypothetical protein 612011..612370 Delftia acidovorans SPH-1 5746101 YP_001561590.1 CDS Daci_0559 NC_010002.1 612499 613449 D PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier; auxin efflux carrier 612499..613449 Delftia acidovorans SPH-1 5746102 YP_001561591.1 CDS Daci_0560 NC_010002.1 613551 615170 D KEGG: rpb:RPB_0468 hypothetical protein; glycosyltransferase 613551..615170 Delftia acidovorans SPH-1 5746103 YP_001561592.1 CDS Daci_0561 NC_010002.1 615167 616171 D PFAM: glycosyl transferase family 2; KEGG: aav:Aave_0599 glycosyl transferase, family 2; glycosyl transferase family protein 615167..616171 Delftia acidovorans SPH-1 5746104 YP_001561593.1 CDS Daci_0562 NC_010002.1 616174 616596 D PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein; GtrA family protein 616174..616596 Delftia acidovorans SPH-1 5746105 YP_001561594.1 CDS Daci_0563 NC_010002.1 616593 617459 D PFAM: YdjC family protein; KEGG: aav:Aave_0597 hypothetical protein; hypothetical protein 616593..617459 Delftia acidovorans SPH-1 5746106 YP_001561595.1 CDS Daci_0564 NC_010002.1 617643 618779 R KEGG: aav:Aave_4182 L-asparaginases, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase I complement(617643..618779) Delftia acidovorans SPH-1 5746107 YP_001561596.1 CDS Daci_0565 NC_010002.1 619003 621291 R KEGG: aav:Aave_4471 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' complement(619003..621291) Delftia acidovorans SPH-1 5746108 YP_001561597.1 CDS hemE NC_010002.1 621740 622852 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(621740..622852) Delftia acidovorans SPH-1 5746109 YP_001561598.1 CDS Daci_0567 NC_010002.1 623030 624019 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2295 uncharacterized protein UPF0065; hypothetical protein 623030..624019 Delftia acidovorans SPH-1 5746110 YP_001561599.1 CDS Daci_0568 NC_010002.1 624251 625033 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 putative enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 624251..625033 Delftia acidovorans SPH-1 5746111 YP_001561600.1 CDS Daci_0569 NC_010002.1 625045 625512 D TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: azo:azo0302 phenylacetic acid degradation protein PaaI; phenylacetic acid degradation protein PaaD 625045..625512 Delftia acidovorans SPH-1 5746112 YP_001561601.1 CDS Daci_0570 NC_010002.1 625524 626828 D TIGRFAM: phenylacetate-CoA ligase; KEGG: mpt:Mpe_A0986 phenylacetate--CoA ligase; phenylacetate-CoA ligase 625524..626828 Delftia acidovorans SPH-1 5746113 YP_001561602.1 CDS Daci_0571 NC_010002.1 626846 627505 D PFAM: regulatory protein TetR; KEGG: vei:Veis_3950 transcriptional regulator, TetR family; TetR family transcriptional regulator 626846..627505 Delftia acidovorans SPH-1 5746114 YP_001561603.1 CDS Daci_0572 NC_010002.1 627541 628692 D PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_3951 extracellular ligand-binding receptor; extracellular ligand-binding receptor 627541..628692 Delftia acidovorans SPH-1 5746115 YP_001561604.1 CDS Daci_0573 NC_010002.1 628776 629804 D PFAM: inner-membrane translocator; KEGG: vei:Veis_3952 inner-membrane translocator; inner-membrane translocator 628776..629804 Delftia acidovorans SPH-1 5746116 YP_001561605.1 CDS Daci_0574 NC_010002.1 629801 631693 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3953 ABC transporter related; ABC transporter-like protein 629801..631693 Delftia acidovorans SPH-1 5746117 YP_001561606.1 CDS Daci_0575 NC_010002.1 631690 632436 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3560 amino-acid composite ATP-binding transmembrane ABC transporter protein; ABC transporter-like protein 631690..632436 Delftia acidovorans SPH-1 5746118 YP_001561607.1 CDS Daci_0576 NC_010002.1 632450 632833 D hypothetical protein 632450..632833 Delftia acidovorans SPH-1 5746119 YP_001561608.1 CDS Daci_0577 NC_010002.1 633469 634557 R hypothetical protein complement(633469..634557) Delftia acidovorans SPH-1 5746120 YP_001561609.1 CDS Daci_0578 NC_010002.1 635590 636573 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4537 uncharacterized protein UPF0065; hypothetical protein complement(635590..636573) Delftia acidovorans SPH-1 5746121 YP_001561610.1 CDS Daci_0579 NC_010002.1 637064 638740 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_4535 monooxygenase, FAD-binding; FAD-dependent oxidoreductase complement(637064..638740) Delftia acidovorans SPH-1 5746122 YP_001561611.1 CDS Daci_0580 NC_010002.1 638874 639839 R PFAM: beta-lactamase domain protein; KEGG: vei:Veis_4551 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(638874..639839) Delftia acidovorans SPH-1 5746123 YP_001561612.1 CDS Daci_0581 NC_010002.1 639914 640807 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_4674 putative transcriptional regulatory protein; IclR family transcriptional regulator 639914..640807 Delftia acidovorans SPH-1 5746124 YP_001561613.1 CDS Daci_0582 NC_010002.1 640827 642659 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_1100 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(640827..642659) Delftia acidovorans SPH-1 5746125 YP_001561614.1 CDS Daci_0583 NC_010002.1 642838 643800 D KEGG: pol:Bpro_2243 hypothetical protein; putative hemolysin-like protein 642838..643800 Delftia acidovorans SPH-1 5746126 YP_001561615.1 CDS Daci_0584 NC_010002.1 644057 644584 R KEGG: ajs:Ajs_3857 CoA-binding domain protein; CoA-binding domain-containing protein complement(644057..644584) Delftia acidovorans SPH-1 5746127 YP_001561616.1 CDS Daci_0585 NC_010002.1 644553 645824 R PFAM: Na+/H+ antiporter NhaA; KEGG: ajs:Ajs_3856 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(644553..645824) Delftia acidovorans SPH-1 5746128 YP_001561617.1 CDS Daci_0586 NC_010002.1 646060 646593 R hypothetical protein complement(646060..646593) Delftia acidovorans SPH-1 5746129 YP_001561618.1 CDS Daci_0587 NC_010002.1 646787 649183 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aav:Aave_4456 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane region complement(646787..649183) Delftia acidovorans SPH-1 5746130 YP_001561619.1 CDS Daci_0588 NC_010002.1 649272 650249 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5616 uncharacterized protein UPF0065; hypothetical protein 649272..650249 Delftia acidovorans SPH-1 5746131 YP_001561620.1 CDS Daci_0589 NC_010002.1 650291 651154 D PFAM: Creatininase; KEGG: ajs:Ajs_3852 creatininase; creatininase 650291..651154 Delftia acidovorans SPH-1 5746132 YP_001561621.1 CDS Daci_0590 NC_010002.1 651513 652487 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4316 uncharacterized protein UPF0065; hypothetical protein complement(651513..652487) Delftia acidovorans SPH-1 5746133 YP_001561622.1 CDS Daci_0591 NC_010002.1 652607 653290 R PFAM: Phosphoglycerate mutase; KEGG: aav:Aave_4443 phosphoglycerate mutase; phosphoglycerate mutase complement(652607..653290) Delftia acidovorans SPH-1 5746134 YP_001561623.1 CDS Daci_0592 NC_010002.1 653378 654337 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pol:Bpro_4242 phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein complement(653378..654337) Delftia acidovorans SPH-1 5746135 YP_001561624.1 CDS Daci_0593 NC_010002.1 654562 655914 R PFAM: aminotransferase class I and II; KEGG: aav:Aave_4437 putative transcriptional regulator, GntR family; GntR family transcriptional regulator complement(654562..655914) Delftia acidovorans SPH-1 5746136 YP_001561625.1 CDS Daci_0594 NC_010002.1 655975 656577 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3843 hypothetical protein; lysine exporter protein LysE/YggA complement(655975..656577) Delftia acidovorans SPH-1 5746137 YP_001561626.1 CDS Daci_0595 NC_010002.1 656795 658246 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: aav:Aave_4434 transcriptional regulator, GntR family; transcriptional regulator 656795..658246 Delftia acidovorans SPH-1 5746138 YP_001561627.1 CDS Daci_0596 NC_010002.1 658460 659173 R KEGG: ajs:Ajs_3823 RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG complement(658460..659173) Delftia acidovorans SPH-1 5746139 YP_001561628.1 CDS Daci_0597 NC_010002.1 659179 660060 R KEGG: ajs:Ajs_3822 hypothetical protein; hypothetical protein complement(659179..660060) Delftia acidovorans SPH-1 5746140 YP_001561629.1 CDS Daci_0598 NC_010002.1 660053 661699 R PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: aav:Aave_4414 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle complement(660053..661699) Delftia acidovorans SPH-1 5746141 YP_001561630.1 CDS Daci_0599 NC_010002.1 661696 663795 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: ajs:Ajs_3820 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(661696..663795) Delftia acidovorans SPH-1 5746142 YP_001561631.1 CDS Daci_0600 NC_010002.1 663792 664967 R PFAM: type III secretion exporter; KEGG: ajs:Ajs_3819 type III secretion exporter; type III secretion exporter complement(663792..664967) Delftia acidovorans SPH-1 5746143 YP_001561632.1 CDS Daci_0601 NC_010002.1 665189 665803 R PFAM: Chemotaxis phosphatase CheZ; KEGG: aav:Aave_4411 chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ complement(665189..665803) Delftia acidovorans SPH-1 5746144 YP_001561633.1 CDS Daci_0602 NC_010002.1 665814 666200 R PFAM: response regulator receiver; KEGG: aav:Aave_4410 response regulator receiver protein; response regulator receiver protein complement(665814..666200) Delftia acidovorans SPH-1 5746145 YP_001561634.1 CDS Daci_0603 NC_010002.1 666325 667362 R PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_4409 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(666325..667362) Delftia acidovorans SPH-1 5746146 YP_001561635.1 CDS Daci_0604 NC_010002.1 667387 668247 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3815 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(667387..668247) Delftia acidovorans SPH-1 5746147 YP_001561636.1 CDS Daci_0605 NC_010002.1 668623 670284 D SMART: Tetratricopeptide domain protein; KEGG: mfa:Mfla_2639 tetratricopeptide TPR_2; hypothetical protein 668623..670284 Delftia acidovorans SPH-1 5746148 YP_001561637.1 CDS Daci_0606 NC_010002.1 670281 671486 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mfa:Mfla_2640 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 670281..671486 Delftia acidovorans SPH-1 5746149 YP_001561638.1 CDS Daci_0607 NC_010002.1 671524 672108 R KEGG: mfa:Mfla_2647 hypothetical protein; hypothetical protein complement(671524..672108) Delftia acidovorans SPH-1 5746150 YP_001561639.1 CDS Daci_0608 NC_010002.1 672157 673125 R hypothetical protein complement(672157..673125) Delftia acidovorans SPH-1 5746151 YP_001561640.1 CDS Daci_0609 NC_010002.1 673128 673793 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein; type 11 methyltransferase complement(673128..673793) Delftia acidovorans SPH-1 5746152 YP_001561641.1 CDS Daci_0610 NC_010002.1 673829 674974 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: mfa:Mfla_2646 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(673829..674974) Delftia acidovorans SPH-1 5746153 YP_001561642.1 CDS Daci_0611 NC_010002.1 674979 675629 R KEGG: xac:XAC1961 acetyltransferase; acetyltransferase complement(674979..675629) Delftia acidovorans SPH-1 5746154 YP_001561643.1 CDS Daci_0612 NC_010002.1 675629 676366 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mfa:Mfla_2644 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(675629..676366) Delftia acidovorans SPH-1 5746155 YP_001561644.1 CDS Daci_0613 NC_010002.1 676363 677124 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC1963 3-oxoacyl-[ACP] reductase; short-chain dehydrogenase/reductase SDR complement(676363..677124) Delftia acidovorans SPH-1 5746156 YP_001561645.1 CDS Daci_0614 NC_010002.1 677121 678158 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mfa:Mfla_2642 3-oxoacyl-(acyl-carrier protein) synthase; beta-ketoacyl-acyl-carrier-protein synthase I complement(677121..678158) Delftia acidovorans SPH-1 5746157 YP_001561646.1 CDS Daci_0615 NC_010002.1 678164 678388 R KEGG: pfl:PFL_1656 acyl carrier protein-related protein; acyl carrier protein-like protein complement(678164..678388) Delftia acidovorans SPH-1 5746158 YP_001561647.1 CDS Daci_0616 NC_010002.1 678625 681549 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I3210 TPR domain protein; hypothetical protein 678625..681549 Delftia acidovorans SPH-1 5746159 YP_001561648.1 CDS Daci_0617 NC_010002.1 681798 682649 D PFAM: flagellin domain protein; KEGG: ajs:Ajs_3813 flagellin domain protein; flagellin domain-containing protein 681798..682649 Delftia acidovorans SPH-1 5746160 YP_001561649.1 CDS Daci_0618 NC_010002.1 682941 683813 D PFAM: flagellin domain protein; KEGG: ajs:Ajs_3812 flagellin domain protein; flagellin domain-containing protein 682941..683813 Delftia acidovorans SPH-1 5746161 YP_001561650.1 CDS Daci_0619 NC_010002.1 683995 685416 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: ajs:Ajs_3811 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 683995..685416 Delftia acidovorans SPH-1 5746162 YP_001561651.1 CDS Daci_0620 NC_010002.1 685521 685934 D PFAM: flagellar protein FliS; KEGG: ajs:Ajs_3810 flagellar protein FliS; flagellar protein FliS 685521..685934 Delftia acidovorans SPH-1 5746163 YP_001561652.1 CDS Daci_0621 NC_010002.1 685937 686236 D KEGG: ajs:Ajs_3809 flagellar protein FliT; flagellar protein FliT 685937..686236 Delftia acidovorans SPH-1 5746164 YP_001561653.1 CDS Daci_0622 NC_010002.1 686380 687672 R PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein; putative signal transduction protein complement(686380..687672) Delftia acidovorans SPH-1 5746165 YP_001561654.1 CDS Daci_0623 NC_010002.1 687694 688893 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like; flagellar hook-associated protein 3 complement(687694..688893) Delftia acidovorans SPH-1 5746166 YP_001561655.1 CDS Daci_0624 NC_010002.1 688917 690845 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aav:Aave_4430 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(688917..690845) Delftia acidovorans SPH-1 5746167 YP_001561656.1 CDS Daci_0625 NC_010002.1 690893 691855 R KEGG: aav:Aave_4429 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(690893..691855) Delftia acidovorans SPH-1 5746168 YP_001561657.1 CDS flgI NC_010002.1 691852 693000 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(691852..693000) Delftia acidovorans SPH-1 5746169 YP_001561658.1 CDS Daci_0627 NC_010002.1 693021 693728 R PFAM: flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein; flagellar L-ring protein complement(693021..693728) Delftia acidovorans SPH-1 5746170 YP_001561659.1 CDS Daci_0628 NC_010002.1 693930 694712 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: aav:Aave_4425 flagellar basal-body rod protein FlgG; flagellar basal-body rod protein FlgG complement(693930..694712) Delftia acidovorans SPH-1 5746171 YP_001561660.1 CDS Daci_0629 NC_010002.1 694735 695475 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: aav:Aave_4424 transcriptional regulator, fis family; flagellar basal-body rod protein FlgF complement(694735..695475) Delftia acidovorans SPH-1 5746172 YP_001561661.1 CDS Daci_0630 NC_010002.1 695505 696776 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: vei:Veis_0566 flagellar basal body FlaE domain protein; flagellar basal body FlaE domain-containing protein complement(695505..696776) Delftia acidovorans SPH-1 5746173 YP_001561662.1 CDS Daci_0631 NC_010002.1 696817 697479 R PFAM: flagellar hook capping protein; KEGG: aav:Aave_4422 flagellar hook capping protein; flagellar hook capping protein complement(696817..697479) Delftia acidovorans SPH-1 5746174 YP_001561663.1 CDS Daci_0632 NC_010002.1 697514 697918 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ajs:Ajs_3828 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(697514..697918) Delftia acidovorans SPH-1 5746175 YP_001561664.1 CDS Daci_0633 NC_010002.1 697949 698431 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB complement(697949..698431) Delftia acidovorans SPH-1 5746176 YP_001561665.1 CDS Daci_0634 NC_010002.1 698597 699361 D KEGG: aav:Aave_4419 SAF domain; SAF domain-containing protein 698597..699361 Delftia acidovorans SPH-1 5746177 YP_001561666.1 CDS Daci_0635 NC_010002.1 699440 699760 D KEGG: aav:Aave_4418 anti-sigma-28 factor, FlgM; putative anti-sigma-28 factor FlgM 699440..699760 Delftia acidovorans SPH-1 5746178 YP_001561667.1 CDS Daci_0636 NC_010002.1 699837 700208 D KEGG: vei:Veis_0572 hypothetical protein; hypothetical protein 699837..700208 Delftia acidovorans SPH-1 5746179 YP_001561668.1 CDS Daci_0637 NC_010002.1 700653 700982 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aav:Aave_4396 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(700653..700982) Delftia acidovorans SPH-1 5746180 YP_001561669.1 CDS Daci_0638 NC_010002.1 701148 702848 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: aav:Aave_4395 flagellar M-ring protein FliF; flagellar M-ring protein FliF 701148..702848 Delftia acidovorans SPH-1 5746181 YP_001561670.1 CDS Daci_0639 NC_010002.1 702876 703871 D PFAM: flagellar motor switch protein FliG; KEGG: aav:Aave_4394 flagellar motor switch protein FliG; flagellar motor switch protein FliG 702876..703871 Delftia acidovorans SPH-1 5746182 YP_001561671.1 CDS Daci_0640 NC_010002.1 703864 704775 D PFAM: flagellar assembly protein FliH; KEGG: aav:Aave_4393 flagellar assembly protein FliH; flagellar assembly protein FliH 703864..704775 Delftia acidovorans SPH-1 5746183 YP_001561672.1 CDS Daci_0641 NC_010002.1 704765 706207 D KEGG: aav:Aave_4392 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 704765..706207 Delftia acidovorans SPH-1 5746184 YP_001561673.1 CDS Daci_0642 NC_010002.1 706273 706737 D TIGRFAM: flagellar export protein FliJ; KEGG: aav:Aave_4391 flagellar export protein FliJ; flagellar export protein FliJ 706273..706737 Delftia acidovorans SPH-1 5746185 YP_001561674.1 CDS Daci_0643 NC_010002.1 706741 708252 D PFAM: flagellar hook-length control protein; KEGG: ajs:Ajs_3802 flagellar hook-length control protein; flagellar hook-length control protein 706741..708252 Delftia acidovorans SPH-1 5746186 YP_001561675.1 CDS Daci_0644 NC_010002.1 708506 709081 D PFAM: flagellar basal body-associated protein FliL; KEGG: ajs:Ajs_3801 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 708506..709081 Delftia acidovorans SPH-1 5746187 YP_001561676.1 CDS Daci_0645 NC_010002.1 709100 710104 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: ajs:Ajs_3800 flagellar motor switch protein FliM; flagellar motor switch protein FliM 709100..710104 Delftia acidovorans SPH-1 5746188 YP_001561677.1 CDS Daci_0646 NC_010002.1 710094 710525 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: aav:Aave_4387 flagellar motor switch protein FliN; flagellar motor switch protein FliN 710094..710525 Delftia acidovorans SPH-1 5746189 YP_001561678.1 CDS Daci_0647 NC_010002.1 710536 710871 D PFAM: flagellar biosynthesis protein FliO; KEGG: ajs:Ajs_3798 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 710536..710871 Delftia acidovorans SPH-1 5746190 YP_001561679.1 CDS fliP NC_010002.1 710864 711649 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 710864..711649 Delftia acidovorans SPH-1 5746191 YP_001561680.1 CDS Daci_0649 NC_010002.1 711677 711946 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 711677..711946 Delftia acidovorans SPH-1 5746192 YP_001561681.1 CDS Daci_0650 NC_010002.1 711976 712746 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 711976..712746 Delftia acidovorans SPH-1 5746193 YP_001561682.1 CDS Daci_0651 NC_010002.1 712795 713424 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_4382 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(712795..713424) Delftia acidovorans SPH-1 5746194 YP_001561683.1 CDS Daci_0652 NC_010002.1 713464 714612 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase complement(713464..714612) Delftia acidovorans SPH-1 5746195 YP_001561684.1 CDS Daci_0653 NC_010002.1 714732 715178 D KEGG: ajs:Ajs_3792 hypothetical protein; hypothetical protein 714732..715178 Delftia acidovorans SPH-1 5746196 YP_001561685.1 CDS Daci_0654 NC_010002.1 715231 715593 D PFAM: response regulator receiver; KEGG: vei:Veis_2177 response regulator receiver protein; response regulator receiver protein 715231..715593 Delftia acidovorans SPH-1 5746197 YP_001561686.1 CDS Daci_0655 NC_010002.1 715633 717831 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_4378 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase 715633..717831 Delftia acidovorans SPH-1 5746198 YP_001561687.1 CDS Daci_0656 NC_010002.1 717947 718435 D PFAM: CheW domain protein; KEGG: vei:Veis_2175 putative CheW protein; CheW protein 717947..718435 Delftia acidovorans SPH-1 5746199 YP_001561688.1 CDS Daci_0657 NC_010002.1 718462 719352 D PFAM: MCP methyltransferase CheR-type; KEGG: rfr:Rfer_0569 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 718462..719352 Delftia acidovorans SPH-1 5746200 YP_001561689.1 CDS Daci_0658 NC_010002.1 719386 720123 D stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 719386..720123 Delftia acidovorans SPH-1 5746201 YP_001561690.1 CDS Daci_0659 NC_010002.1 720139 721272 D PFAM: CheB methylesterase; response regulator receiver; KEGG: aav:Aave_4374 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 720139..721272 Delftia acidovorans SPH-1 5746202 YP_001561691.1 CDS Daci_0660 NC_010002.1 721348 723228 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3785 ABC transporter related; ABC transporter-like protein complement(721348..723228) Delftia acidovorans SPH-1 5746203 YP_001561692.1 CDS Daci_0661 NC_010002.1 734915 735682 R PFAM: glutamine amidotransferase class-II; KEGG: aav:Aave_0403 glutamine amidotransferase, class-II; class II glutamine amidotransferase complement(734915..735682) Delftia acidovorans SPH-1 5746214 YP_001561693.1 CDS Daci_0662 NC_010002.1 735923 736450 D KEGG: bte:BTH_I2428 hypothetical protein; hypothetical protein 735923..736450 Delftia acidovorans SPH-1 5746215 YP_001561694.1 CDS Daci_0663 NC_010002.1 736514 736702 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(736514..736702) Delftia acidovorans SPH-1 5746216 YP_001561695.1 CDS Daci_0664 NC_010002.1 736720 736974 R KEGG: aav:Aave_0406 hypothetical protein; hypothetical protein complement(736720..736974) Delftia acidovorans SPH-1 5746217 YP_001561696.1 CDS Daci_0665 NC_010002.1 737055 739247 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(737055..739247) Delftia acidovorans SPH-1 5746218 YP_001561697.1 CDS Daci_0666 NC_010002.1 739513 740487 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0339 transcriptional regulator, LysR family; LysR family transcriptional regulator 739513..740487 Delftia acidovorans SPH-1 5746219 YP_001561698.1 CDS Daci_0667 NC_010002.1 740516 741121 D KEGG: aav:Aave_0410 hypothetical protein; hypothetical protein 740516..741121 Delftia acidovorans SPH-1 5746220 YP_001561699.1 CDS Daci_0668 NC_010002.1 741229 741675 D KEGG: aav:Aave_0412 putative transmembrane protein; putative transmembrane protein 741229..741675 Delftia acidovorans SPH-1 5746221 YP_001561700.1 CDS argS NC_010002.1 741730 743427 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 741730..743427 Delftia acidovorans SPH-1 5746222 YP_001561701.1 CDS Daci_0670 NC_010002.1 743448 744137 D PFAM: Sporulation domain protein; KEGG: aav:Aave_0415 sporulation domain protein; sporulation domain-containing protein 743448..744137 Delftia acidovorans SPH-1 5746223 YP_001561702.1 CDS Daci_0671 NC_010002.1 744219 744869 D PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0345 DsbA oxidoreductase; DSBA oxidoreductase 744219..744869 Delftia acidovorans SPH-1 5746224 YP_001561703.1 CDS Daci_0672 NC_010002.1 745017 745703 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: ajs:Ajs_0346 OstA family protein; lipopolysaccharide transport periplasmic protein LptA 745017..745703 Delftia acidovorans SPH-1 5746225 YP_001561704.1 CDS Daci_0673 NC_010002.1 745700 746488 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_0418 ABC transporter-related protein; ABC transporter-like protein 745700..746488 Delftia acidovorans SPH-1 5746226 YP_001561705.1 CDS Daci_0674 NC_010002.1 746543 748159 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ajs:Ajs_0348 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma 54 subunit RpoN 746543..748159 Delftia acidovorans SPH-1 5746227 YP_001561706.1 CDS Daci_0675 NC_010002.1 748198 749805 R PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; SMART: AAA ATPase; KEGG: pna:Pnap_0497 regulator of RNA terminal phosphate cyclase; regulator of RNA terminal phosphate cyclase complement(748198..749805) Delftia acidovorans SPH-1 5746228 YP_001561707.1 CDS Daci_0676 NC_010002.1 750503 751642 D PFAM: band 7 protein; KEGG: pol:Bpro_1471 band 7 protein; hypothetical protein 750503..751642 Delftia acidovorans SPH-1 5746230 YP_001561708.1 CDS Daci_0677 NC_010002.1 751714 752559 D KEGG: sdy:SDY_3647 hypothetical protein; hypothetical protein 751714..752559 Delftia acidovorans SPH-1 5746231 YP_001561709.1 CDS Daci_0678 NC_010002.1 752592 753830 D PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027; hypothetical protein 752592..753830 Delftia acidovorans SPH-1 5746232 YP_001561710.1 CDS Daci_0679 NC_010002.1 753989 754804 D KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein; nucleotidyltransferase-like protein 753989..754804 Delftia acidovorans SPH-1 5746233 YP_001561711.1 CDS Daci_0680 NC_010002.1 754814 755857 D KEGG: pna:Pnap_0499 RNA-3'-phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-phosphate cyclase 754814..755857 Delftia acidovorans SPH-1 5746234 YP_001561712.1 CDS Daci_0681 NC_010002.1 755864 756829 R TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: aav:Aave_0120 arginase; arginase complement(755864..756829) Delftia acidovorans SPH-1 5746235 YP_001561713.1 CDS Daci_0682 NC_010002.1 756847 757920 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(756847..757920) Delftia acidovorans SPH-1 5746236 YP_001561714.1 CDS Daci_0683 NC_010002.1 758036 759316 D PFAM: putative RNA methylase; THUMP domain protein; KEGG: aav:Aave_0422 putative RNA methylase; putative RNA methylase 758036..759316 Delftia acidovorans SPH-1 5746237 YP_001561715.1 CDS Daci_0684 NC_010002.1 759313 759801 D KEGG: aav:Aave_0423 PilT protein domain protein; PilT domain-containing protein 759313..759801 Delftia acidovorans SPH-1 5746238 YP_001561716.1 CDS Daci_0685 NC_010002.1 759992 760309 D PFAM: small multidrug resistance protein; KEGG: swi:Swit_3611 small multidrug resistance protein; small multidrug resistance protein 759992..760309 Delftia acidovorans SPH-1 5746239 YP_001561717.1 CDS Daci_0686 NC_010002.1 760322 760873 R PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2696 IAA acetyltransferase; N-acetyltransferase GCN5 complement(760322..760873) Delftia acidovorans SPH-1 5746240 YP_001561718.1 CDS Daci_0687 NC_010002.1 761274 763658 R PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; ferredoxin complement(761274..763658) Delftia acidovorans SPH-1 5746241 YP_001561719.1 CDS Daci_0688 NC_010002.1 763686 764666 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B1280 probable extra-cytoplasmic solute receptor; hypothetical protein complement(763686..764666) Delftia acidovorans SPH-1 5746242 YP_001561720.1 CDS Daci_0689 NC_010002.1 764827 765651 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B5276 regulatory protein, IclR; IclR family transcriptional regulator 764827..765651 Delftia acidovorans SPH-1 5746243 YP_001561721.1 CDS Daci_0690 NC_010002.1 765693 766709 R KEGG: aav:Aave_0425 hypothetical protein; hypothetical protein complement(765693..766709) Delftia acidovorans SPH-1 5746244 YP_001561722.1 CDS Daci_0691 NC_010002.1 766712 767494 D PFAM: regulatory protein IclR; KEGG: ajs:Ajs_0111 regulatory proteins, IclR; IclR family transcriptional regulator 766712..767494 Delftia acidovorans SPH-1 5746245 YP_001561723.1 CDS Daci_0692 NC_010002.1 767496 768620 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(767496..768620) Delftia acidovorans SPH-1 5746246 YP_001561724.1 CDS Daci_0693 NC_010002.1 768642 769604 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0108 uncharacterized protein UPF0065; hypothetical protein complement(768642..769604) Delftia acidovorans SPH-1 5746247 YP_001561725.1 CDS Daci_0694 NC_010002.1 769645 770424 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(769645..770424) Delftia acidovorans SPH-1 5746248 YP_001561726.1 CDS Daci_0695 NC_010002.1 770447 771625 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0105 acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase complement(770447..771625) Delftia acidovorans SPH-1 5746249 YP_001561727.1 CDS Daci_0696 NC_010002.1 771789 773354 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 771789..773354 Delftia acidovorans SPH-1 5746250 YP_001561728.1 CDS Daci_0697 NC_010002.1 773403 774545 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 773403..774545 Delftia acidovorans SPH-1 5746251 YP_001561729.1 CDS Daci_0698 NC_010002.1 774815 777193 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_3486 rhs element Vgr protein; ImpA family type VI secretion-associated protein 774815..777193 Delftia acidovorans SPH-1 5746252 YP_001561730.1 CDS Daci_0699 NC_010002.1 777209 777550 D PFAM: PAAR repeat-containing protein; KEGG: ppr:PBPRA3102 hypothetical protein; PAAR repeat-containing protein 777209..777550 Delftia acidovorans SPH-1 5746253 YP_001561731.1 CDS Daci_0700 NC_010002.1 777557 778165 D KEGG: mxa:MXAN_4169 hypothetical protein; hypothetical protein 777557..778165 Delftia acidovorans SPH-1 5746254 YP_001561732.1 CDS Daci_0701 NC_010002.1 778162 778566 D hypothetical protein 778162..778566 Delftia acidovorans SPH-1 5746255 YP_001561733.1 CDS Daci_0702 NC_010002.1 778563 779318 D KEGG: bps:BPSS1058 bacteriophage GP30 protein; hypothetical protein 778563..779318 Delftia acidovorans SPH-1 5746256 YP_001561734.1 CDS Daci_0703 NC_010002.1 779351 780445 D hypothetical protein 779351..780445 Delftia acidovorans SPH-1 5746257 YP_001561735.1 CDS Daci_0704 NC_010002.1 780465 781574 D KEGG: mxa:MXAN_6136 hypothetical protein; hypothetical protein 780465..781574 Delftia acidovorans SPH-1 5746258 YP_001561736.1 CDS Daci_0705 NC_010002.1 781575 782108 D KEGG: aav:Aave_4007 hypothetical protein; hypothetical protein 781575..782108 Delftia acidovorans SPH-1 5746259 YP_001561737.1 CDS Daci_0706 NC_010002.1 782147 783091 D TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif; yecA family protein 782147..783091 Delftia acidovorans SPH-1 5746260 YP_001561738.1 CDS Daci_0707 NC_010002.1 783125 783439 D PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_0591 transcriptional regulator, XRE family; XRE family transcriptional regulator 783125..783439 Delftia acidovorans SPH-1 5746261 YP_001561739.1 CDS Daci_0708 NC_010002.1 783420 783911 R PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain protein; CinA domain-containing protein complement(783420..783911) Delftia acidovorans SPH-1 5746262 YP_001561740.1 CDS Daci_0709 NC_010002.1 783922 784422 R PFAM: phosphatidylglycerophosphatase A; KEGG: ajs:Ajs_0355 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A complement(783922..784422) Delftia acidovorans SPH-1 5746263 YP_001561741.1 CDS Daci_0710 NC_010002.1 784553 786205 R KEGG: aav:Aave_0431 hypothetical protein; hypothetical protein complement(784553..786205) Delftia acidovorans SPH-1 5746264 YP_001561742.1 CDS Daci_0711 NC_010002.1 786244 787209 R KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(786244..787209) Delftia acidovorans SPH-1 5746265 YP_001561743.1 CDS Daci_0712 NC_010002.1 787275 788174 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1817 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(787275..788174) Delftia acidovorans SPH-1 5746266 YP_001561744.1 CDS Daci_0713 NC_010002.1 788245 789693 D PFAM: protein of unknown function DUF1446; KEGG: ajs:Ajs_1818 protein of unknown function DUF1446; hypothetical protein 788245..789693 Delftia acidovorans SPH-1 5746267 YP_001561745.1 CDS Daci_0714 NC_010002.1 789690 790061 D KEGG: ajs:Ajs_1819 hypothetical protein; hypothetical protein 789690..790061 Delftia acidovorans SPH-1 5746268 YP_001561746.1 CDS Daci_0715 NC_010002.1 790110 791093 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1820 uncharacterized protein UPF0065; hypothetical protein 790110..791093 Delftia acidovorans SPH-1 5746269 YP_001561747.1 CDS Daci_0716 NC_010002.1 791202 793322 D KEGG: aav:Aave_3389 hypothetical protein; hypothetical protein 791202..793322 Delftia acidovorans SPH-1 5746270 YP_001561748.1 CDS Daci_0717 NC_010002.1 793385 794131 R hypothetical protein complement(793385..794131) Delftia acidovorans SPH-1 5746271 YP_001561749.1 CDS Daci_0718 NC_010002.1 794485 795615 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(794485..795615) Delftia acidovorans SPH-1 5746272 YP_001561750.1 CDS Daci_0719 NC_010002.1 795599 796861 R PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(795599..796861) Delftia acidovorans SPH-1 5746273 YP_001561751.1 CDS Daci_0720 NC_010002.1 797060 799027 R KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein complement(797060..799027) Delftia acidovorans SPH-1 5746274 YP_001561752.1 CDS apaG NC_010002.1 799080 799550 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(799080..799550) Delftia acidovorans SPH-1 5746275 YP_001561753.1 CDS Daci_0722 NC_010002.1 799604 800287 D PFAM: ribulose-phosphate 3-epimerase; KEGG: ajs:Ajs_0361 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 799604..800287 Delftia acidovorans SPH-1 5746276 YP_001561754.1 CDS Daci_0723 NC_010002.1 800355 800681 R hypothetical protein complement(800355..800681) Delftia acidovorans SPH-1 5746277 YP_001561755.1 CDS Daci_0724 NC_010002.1 800841 801887 R KEGG: vei:Veis_4644 porin, gram-negative type; porin complement(800841..801887) Delftia acidovorans SPH-1 5746278 YP_001561756.1 CDS Daci_0725 NC_010002.1 802253 803788 D PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 802253..803788 Delftia acidovorans SPH-1 5746279 YP_001561757.1 CDS Daci_0726 NC_010002.1 803822 804514 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfo:Pfl_3855 two component heavy metal response transcriptional regulator, winged helix family; two component transcriptional regulator 803822..804514 Delftia acidovorans SPH-1 5746280 YP_001561758.1 CDS Daci_0727 NC_010002.1 804567 805574 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: pol:Bpro_1462 transketolase, central region; transketolase central region complement(804567..805574) Delftia acidovorans SPH-1 5746281 YP_001561759.1 CDS Daci_0728 NC_010002.1 805571 806431 R PFAM: Transketolase domain protein; KEGG: pol:Bpro_1461 transketolase-like; transketolase domain-containing protein complement(805571..806431) Delftia acidovorans SPH-1 5746282 YP_001561760.1 CDS Daci_0729 NC_010002.1 806465 807724 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(806465..807724) Delftia acidovorans SPH-1 5746283 YP_001561761.1 CDS Daci_0730 NC_010002.1 807738 808292 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_1456 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(807738..808292) Delftia acidovorans SPH-1 5746284 YP_001561762.1 CDS Daci_0731 NC_010002.1 808310 809296 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(808310..809296) Delftia acidovorans SPH-1 5746285 YP_001561763.1 CDS Daci_0732 NC_010002.1 809359 810108 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_1454 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(809359..810108) Delftia acidovorans SPH-1 5746286 YP_001561764.1 CDS Daci_0733 NC_010002.1 810213 811184 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1453 transcriptional regulator, LysR family; LysR family transcriptional regulator 810213..811184 Delftia acidovorans SPH-1 5746287 YP_001561765.1 CDS Daci_0734 NC_010002.1 811382 814027 D KEGG: cvi:CV_2953 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 811382..814027 Delftia acidovorans SPH-1 5746288 YP_001561766.1 CDS Daci_0735 NC_010002.1 814072 816597 R KEGG: aav:Aave_2236 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(814072..816597) Delftia acidovorans SPH-1 5746289 YP_001561767.1 CDS Daci_0736 NC_010002.1 816628 817467 R PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0499 putative cyclohexadienyl dehydratase; extracellular solute-binding protein complement(816628..817467) Delftia acidovorans SPH-1 5746290 YP_001561768.1 CDS Daci_0737 NC_010002.1 817477 818241 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: shw:Sputw3181_0802 response regulator receiver modulated metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(817477..818241) Delftia acidovorans SPH-1 5746291 YP_001561769.1 CDS Daci_0738 NC_010002.1 818241 818612 R PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein; response regulator receiver protein complement(818241..818612) Delftia acidovorans SPH-1 5746292 YP_001561770.1 CDS Daci_0739 NC_010002.1 818881 820116 R KEGG: aav:Aave_0592 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(818881..820116) Delftia acidovorans SPH-1 5746293 YP_001561771.1 CDS Daci_0740 NC_010002.1 820191 821888 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bvi:Bcep1808_5173 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(820191..821888) Delftia acidovorans SPH-1 5746294 YP_001561772.1 CDS Daci_0741 NC_010002.1 822221 822703 D PFAM: CheW domain protein; KEGG: rfr:Rfer_0924 CheW protein; CheW protein 822221..822703 Delftia acidovorans SPH-1 5746295 YP_001561773.1 CDS Daci_0742 NC_010002.1 822775 824520 D PFAM: chemotaxis sensory transducer; KEGG: bte:BTH_I2374 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 822775..824520 Delftia acidovorans SPH-1 5746296 YP_001561774.1 CDS Daci_0743 NC_010002.1 824673 825350 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_0363 phosphoglycolate phosphatase; phosphoglycolate phosphatase 824673..825350 Delftia acidovorans SPH-1 5746297 YP_001561775.1 CDS Daci_0744 NC_010002.1 825503 826798 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 825503..826798 Delftia acidovorans SPH-1 5746298 YP_001561776.1 CDS Daci_0745 NC_010002.1 827142 827735 D KEGG: aav:Aave_2543 hypothetical protein; hypothetical protein 827142..827735 Delftia acidovorans SPH-1 5746299 YP_001561777.1 CDS Daci_0746 NC_010002.1 828300 829070 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bch:Bcen2424_3439 two component transcriptional regulator, winged helix family; two component transcriptional regulator 828300..829070 Delftia acidovorans SPH-1 5746300 YP_001561778.1 CDS Daci_0747 NC_010002.1 829039 830454 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bch:Bcen2424_3440 periplasmic sensor signal transduction histidine kinase; histidine kinase 829039..830454 Delftia acidovorans SPH-1 5746301 YP_001561779.1 CDS Daci_0748 NC_010002.1 830429 831025 R KEGG: ajs:Ajs_0365 putative lipoprotein transmembrane; putative lipoprotein transmembrane complement(830429..831025) Delftia acidovorans SPH-1 5746302 YP_001561780.1 CDS Daci_0749 NC_010002.1 831389 832369 R PFAM: Patatin; KEGG: swi:Swit_5143 patatin; patatin complement(831389..832369) Delftia acidovorans SPH-1 5746303 YP_001561781.1 CDS Daci_0750 NC_010002.1 832369 832818 R hypothetical protein complement(832369..832818) Delftia acidovorans SPH-1 5746304 YP_001561782.1 CDS Daci_0751 NC_010002.1 832815 833210 R hypothetical protein complement(832815..833210) Delftia acidovorans SPH-1 5746305 YP_001561783.1 CDS Daci_0752 NC_010002.1 833568 835067 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 833568..835067 Delftia acidovorans SPH-1 5746306 YP_001561784.1 CDS Daci_0753 NC_010002.1 835064 835414 D PFAM: Chorismate mutase; KEGG: aav:Aave_0443 chorismate mutase; chorismate mutase 835064..835414 Delftia acidovorans SPH-1 5746307 YP_001561785.1 CDS Daci_0754 NC_010002.1 835411 836643 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: pla:Plav_3453 acetate kinase; acetate kinase complement(835411..836643) Delftia acidovorans SPH-1 5746308 YP_001561786.1 CDS Daci_0755 NC_010002.1 836640 838118 R PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: pla:Plav_3451 phosphate butyryltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase complement(836640..838118) Delftia acidovorans SPH-1 5746309 YP_001561787.1 CDS Daci_0756 NC_010002.1 838115 840574 R KEGG: pla:Plav_3450 hypothetical protein; hypothetical protein complement(838115..840574) Delftia acidovorans SPH-1 5746310 YP_001561788.1 CDS Daci_0757 NC_010002.1 840712 841221 R KEGG: pla:Plav_3448 hypothetical protein; hypothetical protein complement(840712..841221) Delftia acidovorans SPH-1 5746311 YP_001561789.1 CDS Daci_0758 NC_010002.1 841275 842405 R PFAM: ABC-2 type transporter; KEGG: pla:Plav_3447 ABC-2 type transporter; ABC-2 type transporter complement(841275..842405) Delftia acidovorans SPH-1 5746312 YP_001561790.1 CDS Daci_0759 NC_010002.1 842407 845163 R PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related; ABC transporter-like protein complement(842407..845163) Delftia acidovorans SPH-1 5746313 YP_001561791.1 CDS Daci_0760 NC_010002.1 845160 846251 R PFAM: secretion protein HlyD family protein; KEGG: pla:Plav_3445 secretion protein HlyD family protein; secretion protein HlyD family protein complement(845160..846251) Delftia acidovorans SPH-1 5746314 YP_001561792.1 CDS Daci_0761 NC_010002.1 846269 847744 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pla:Plav_3444 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(846269..847744) Delftia acidovorans SPH-1 5746315 YP_001561793.1 CDS Daci_0762 NC_010002.1 847778 848545 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(847778..848545) Delftia acidovorans SPH-1 5746316 YP_001561794.1 CDS Daci_0763 NC_010002.1 849107 850603 D KEGG: mms:mma_1885 hypothetical protein; hypothetical protein 849107..850603 Delftia acidovorans SPH-1 5746317 YP_001561795.1 CDS Daci_0764 NC_010002.1 850799 851911 D KEGG: fra:Francci3_2920 hypothetical protein; hypothetical protein 850799..851911 Delftia acidovorans SPH-1 5746318 YP_001561796.1 CDS Daci_0765 NC_010002.1 851934 853178 D PFAM: toxic anion resistance family protein; KEGG: prw:PsycPRwf_2138 toxic anion resistance family protein; toxic anion resistance family protein 851934..853178 Delftia acidovorans SPH-1 5746319 YP_001561797.1 CDS Daci_0766 NC_010002.1 853181 854791 D PFAM: von Willebrand factor type A; KEGG: fra:Francci3_2918 von Willebrand factor, type A; von Willebrand factor type A 853181..854791 Delftia acidovorans SPH-1 5746320 YP_001561798.1 CDS Daci_0767 NC_010002.1 854820 855443 D KEGG: mca:MCA1631 hypothetical protein; hypothetical protein 854820..855443 Delftia acidovorans SPH-1 5746321 YP_001561799.1 CDS Daci_0768 NC_010002.1 855842 856429 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pna:Pnap_3652 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 855842..856429 Delftia acidovorans SPH-1 5746322 YP_001561800.1 CDS trpD NC_010002.1 856458 857492 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 856458..857492 Delftia acidovorans SPH-1 5746323 YP_001561801.1 CDS trpC NC_010002.1 857543 858346 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 857543..858346 Delftia acidovorans SPH-1 5746324 YP_001561802.1 CDS Daci_0771 NC_010002.1 858532 859278 D KEGG: bja:bll6026 probable outer membrane protein B; putative outer membrane protein B 858532..859278 Delftia acidovorans SPH-1 5746325 YP_001561803.1 CDS Daci_0772 NC_010002.1 859297 860790 D PFAM: Fibronectin type III domain protein; KEGG: aav:Aave_4710 ubiquitin; fibronectin type III domain-containing protein 859297..860790 Delftia acidovorans SPH-1 5746326 YP_001561804.1 CDS Daci_0773 NC_010002.1 860855 861679 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 860855..861679 Delftia acidovorans SPH-1 5746327 YP_001561805.1 CDS Daci_0774 NC_010002.1 861673 863706 R PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein; beta-lactamase domain-containing protein complement(861673..863706) Delftia acidovorans SPH-1 5746328 YP_001561806.1 CDS Daci_0775 NC_010002.1 863796 864509 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: aav:Aave_2665 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 863796..864509 Delftia acidovorans SPH-1 5746329 YP_001561807.1 CDS Daci_0776 NC_010002.1 864694 865242 R PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: nmc:NMC1671 hypothetical protein; hypothetical protein complement(864694..865242) Delftia acidovorans SPH-1 5746330 YP_001561808.1 CDS Daci_0777 NC_010002.1 865235 865894 R hypothetical protein complement(865235..865894) Delftia acidovorans SPH-1 5746331 YP_001561809.1 CDS Daci_0778 NC_010002.1 866348 867268 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_0178 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(866348..867268) Delftia acidovorans SPH-1 5746332 YP_001561810.1 CDS Daci_0779 NC_010002.1 867422 868429 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_0179 uncharacterized protein UPF0065; hypothetical protein 867422..868429 Delftia acidovorans SPH-1 5746333 YP_001561811.1 CDS Daci_0780 NC_010002.1 868492 870198 D PFAM: gamma-glutamyltranspeptidase; KEGG: aav:Aave_0589 gamma-glutamyltransferase; gamma-glutamyltransferase 868492..870198 Delftia acidovorans SPH-1 5746334 YP_001561812.1 CDS Daci_0781 NC_010002.1 870221 870862 R KEGG: rha:RHA1_ro03885 hypothetical protein; hypothetical protein complement(870221..870862) Delftia acidovorans SPH-1 5746335 YP_001561813.1 CDS Daci_0782 NC_010002.1 870859 871728 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_3271 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(870859..871728) Delftia acidovorans SPH-1 5746336 YP_001561814.1 CDS Daci_0783 NC_010002.1 871725 872762 R PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_3268 carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein; monosaccharide-transporting ATPase complement(871725..872762) Delftia acidovorans SPH-1 5746337 YP_001561815.1 CDS Daci_0784 NC_010002.1 872759 873793 R PFAM: inner-membrane translocator; KEGG: rle:pRL120193 putative permease component of ABC transporter; monosaccharide-transporting ATPase complement(872759..873793) Delftia acidovorans SPH-1 5746338 YP_001561816.1 CDS Daci_0785 NC_010002.1 873786 875285 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80086 putative ATP-binding component of ABC transporter; ABC transporter-like protein complement(873786..875285) Delftia acidovorans SPH-1 5746339 YP_001561817.1 CDS Daci_0786 NC_010002.1 875299 876288 R KEGG: sme:SMb20484 putative ABC transporter periplasmic sugar-binding protein; putative ABC transporter periplasmic sugar-binding protein complement(875299..876288) Delftia acidovorans SPH-1 5746340 YP_001561818.1 CDS Daci_0787 NC_010002.1 876355 877482 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsh:Rsph17029_3435 regulatory protein, LacI; LacI family transcriptional regulator 876355..877482 Delftia acidovorans SPH-1 5746341 YP_001561819.1 CDS Daci_0788 NC_010002.1 877704 878708 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II0814 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(877704..878708) Delftia acidovorans SPH-1 5746342 YP_001561820.1 CDS Daci_0789 NC_010002.1 878712 880007 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bpl:BURPS1106A_A2112 dehydrogenase, FMN-dependent family; FMN-dependent alpha-hydroxy acid dehydrogenase 878712..880007 Delftia acidovorans SPH-1 5746343 YP_001561821.1 CDS Daci_0790 NC_010002.1 880059 881045 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1312 uncharacterized protein UPF0065; hypothetical protein 880059..881045 Delftia acidovorans SPH-1 5746344 YP_001561822.1 CDS Daci_0791 NC_010002.1 881183 881686 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2923 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 881183..881686 Delftia acidovorans SPH-1 5746345 YP_001561823.1 CDS Daci_0792 NC_010002.1 881702 882682 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4073 uncharacterized protein UPF0065; hypothetical protein complement(881702..882682) Delftia acidovorans SPH-1 5746346 YP_001561824.1 CDS Daci_0793 NC_010002.1 882725 883936 R TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain protein; CitB domain-containing protein complement(882725..883936) Delftia acidovorans SPH-1 5746347 YP_001561825.1 CDS Daci_0794 NC_010002.1 883933 885357 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(883933..885357) Delftia acidovorans SPH-1 5746348 YP_001561826.1 CDS Daci_0795 NC_010002.1 885445 886407 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4069 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(885445..886407) Delftia acidovorans SPH-1 5746349 YP_001561827.1 CDS Daci_0796 NC_010002.1 886464 887270 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rme:Rmet_5383 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(886464..887270) Delftia acidovorans SPH-1 5746350 YP_001561828.1 CDS Daci_0797 NC_010002.1 887291 888451 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065; hypothetical protein 887291..888451 Delftia acidovorans SPH-1 5746351 YP_001561829.1 CDS Daci_0798 NC_010002.1 888508 890007 D PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5381 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 888508..890007 Delftia acidovorans SPH-1 5746352 YP_001561830.1 CDS Daci_0799 NC_010002.1 890039 890824 D KEGG: rme:Rmet_5380 hypothetical protein; citrate synthase 890039..890824 Delftia acidovorans SPH-1 5746353 YP_001561831.1 CDS Daci_0800 NC_010002.1 890864 892039 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB1217 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 890864..892039 Delftia acidovorans SPH-1 5746354 YP_001561832.1 CDS Daci_0801 NC_010002.1 892076 893089 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B2533 probable extra-cytoplasmic solute receptor; hypothetical protein 892076..893089 Delftia acidovorans SPH-1 5746355 YP_001561833.1 CDS Daci_0802 NC_010002.1 893101 893889 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 893101..893889 Delftia acidovorans SPH-1 5746356 YP_001561834.1 CDS Daci_0803 NC_010002.1 893892 894818 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1219 LysR-family transcriptional regulator; LysR family transcriptional regulator complement(893892..894818) Delftia acidovorans SPH-1 5746357 YP_001561835.1 CDS mnmA NC_010002.1 894920 896038 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 894920..896038 Delftia acidovorans SPH-1 5746358 YP_001561836.1 CDS Daci_0805 NC_010002.1 896170 897729 D PFAM: beta-lactamase; KEGG: reh:H16_A2128 beta-lactamase class C; beta-lactamase 896170..897729 Delftia acidovorans SPH-1 5746359 YP_001561837.1 CDS Daci_0806 NC_010002.1 897698 900463 R PFAM: ATP-binding region ATPase domain protein; KEGG: rme:Rmet_5166 putative signal transduction histidine kinase; histidine kinase complement(897698..900463) Delftia acidovorans SPH-1 5746360 YP_001561838.1 CDS Daci_0807 NC_010002.1 900576 901211 D PFAM: regulatory protein TetR; KEGG: vei:Veis_3950 transcriptional regulator, TetR family; TetR family transcriptional regulator 900576..901211 Delftia acidovorans SPH-1 5746361 YP_001561839.1 CDS Daci_0808 NC_010002.1 901227 902885 R TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase_; KEGG: eba:ebA3541 PaaZ protein involved in aerobic phenylacetate metabolism; phenylacetic acid degradation protein paaN complement(901227..902885) Delftia acidovorans SPH-1 5746362 YP_001561840.1 CDS Daci_0809 NC_010002.1 903034 904353 D KEGG: mpt:Mpe_A0986 phenylacetate--CoA ligase; TIGRFAM: phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate-CoA ligase 903034..904353 Delftia acidovorans SPH-1 5746363 YP_001561841.1 CDS paaA NC_010002.1 904399 905421 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 904399..905421 Delftia acidovorans SPH-1 5746364 YP_001561842.1 CDS paaB NC_010002.1 905418 905723 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 905418..905723 Delftia acidovorans SPH-1 5746365 YP_001561843.1 CDS Daci_0812 NC_010002.1 905737 906519 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: vei:Veis_3947 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI 905737..906519 Delftia acidovorans SPH-1 5746366 YP_001561844.1 CDS Daci_0813 NC_010002.1 906519 907088 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A0990 putative ring oxidation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ 906519..907088 Delftia acidovorans SPH-1 5746367 YP_001561845.1 CDS Daci_0814 NC_010002.1 907085 908182 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK 907085..908182 Delftia acidovorans SPH-1 5746368 YP_001561846.1 CDS Daci_0815 NC_010002.1 908213 909667 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aav:Aave_0427 sulphate transporter; sulfate transporter complement(908213..909667) Delftia acidovorans SPH-1 5746369 YP_001561847.1 CDS Daci_0816 NC_010002.1 910001 910498 R hypothetical protein complement(910001..910498) Delftia acidovorans SPH-1 5746370 YP_001561848.1 CDS Daci_0817 NC_010002.1 910585 911151 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aav:Aave_4713 single-strand binding protein; ssDNA-binding protein complement(910585..911151) Delftia acidovorans SPH-1 5746371 YP_001561849.1 CDS Daci_0818 NC_010002.1 911312 912601 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_4065 major facilitator superfamily MFS_1; major facilitator transporter complement(911312..912601) Delftia acidovorans SPH-1 5746372 YP_001561850.1 CDS Daci_0819 NC_010002.1 912751 915864 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: aav:Aave_4708 excinuclease ABC, A subunit; excinuclease ABC subunit A 912751..915864 Delftia acidovorans SPH-1 5746373 YP_001561851.1 CDS Daci_0820 NC_010002.1 915873 917027 D PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_2431 FAD dependent oxidoreductase; FAD dependent oxidoreductase 915873..917027 Delftia acidovorans SPH-1 5746374 YP_001561852.1 CDS Daci_0821 NC_010002.1 917049 918026 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ajs:Ajs_4061 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(917049..918026) Delftia acidovorans SPH-1 5746375 YP_001561853.1 CDS Daci_0822 NC_010002.1 918177 919304 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4060 uncharacterized protein UPF0065; hypothetical protein complement(918177..919304) Delftia acidovorans SPH-1 5746376 YP_001561854.1 CDS Daci_0823 NC_010002.1 919316 920221 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_4698 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(919316..920221) Delftia acidovorans SPH-1 5746377 YP_001561855.1 CDS pyrF NC_010002.1 920242 921069 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(920242..921069) Delftia acidovorans SPH-1 5746378 YP_001561856.1 CDS Daci_0825 NC_010002.1 921188 922039 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_4057 protein of unknown function DUF6, transmembrane; hypothetical protein 921188..922039 Delftia acidovorans SPH-1 5746379 YP_001561857.1 CDS Daci_0826 NC_010002.1 922114 922713 R KEGG: mfa:Mfla_2213 hypothetical protein; hypothetical protein complement(922114..922713) Delftia acidovorans SPH-1 5746380 YP_001561858.1 CDS Daci_0827 NC_010002.1 922710 923249 R KEGG: ajs:Ajs_2887 hypothetical protein; hypothetical protein complement(922710..923249) Delftia acidovorans SPH-1 5746381 YP_001561859.1 CDS Daci_0828 NC_010002.1 923370 924686 R PFAM: phosphoglycerate kinase; KEGG: ajs:Ajs_4056 phosphoglycerate kinase; phosphoglycerate kinase complement(923370..924686) Delftia acidovorans SPH-1 5746382 YP_001561860.1 CDS Daci_0829 NC_010002.1 924757 925092 R PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport; branched-chain amino acid transport complement(924757..925092) Delftia acidovorans SPH-1 5746383 YP_001561861.1 CDS Daci_0830 NC_010002.1 925092 925955 R PFAM: AzlC family protein; KEGG: ajs:Ajs_4054 AzlC family protein; AzlC family protein complement(925092..925955) Delftia acidovorans SPH-1 5746384 YP_001561862.1 CDS Daci_0831 NC_010002.1 925952 926935 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(925952..926935) Delftia acidovorans SPH-1 5746385 YP_001561863.1 CDS Daci_0832 NC_010002.1 926971 927510 R KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane; putative lipoprotein transmembrane complement(926971..927510) Delftia acidovorans SPH-1 5746386 YP_001561864.1 CDS Daci_0833 NC_010002.1 927507 928019 R KEGG: ajs:Ajs_4051 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(927507..928019) Delftia acidovorans SPH-1 5746387 YP_001561865.1 CDS Daci_0834 NC_010002.1 928219 929424 D PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_4687 peptidoglycan-binding LysM; peptidoglycan-binding LysM 928219..929424 Delftia acidovorans SPH-1 5746388 YP_001561866.1 CDS Daci_0835 NC_010002.1 929450 930667 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ajs:Ajs_4049 transcriptional regulator, fis family; DNA protecting protein DprA 929450..930667 Delftia acidovorans SPH-1 5746389 YP_001561867.1 CDS Daci_0836 NC_010002.1 930811 933216 R KEGG: ajs:Ajs_4003 hypothetical protein; hypothetical protein complement(930811..933216) Delftia acidovorans SPH-1 5746390 YP_001561868.1 CDS secF NC_010002.1 933256 934206 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(933256..934206) Delftia acidovorans SPH-1 5746391 YP_001561869.1 CDS secD NC_010002.1 934220 936142 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(934220..936142) Delftia acidovorans SPH-1 5746392 YP_001561870.1 CDS Daci_0839 NC_010002.1 936234 936569 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mpt:Mpe_A0276 preprotein translocase YajC subunit; preprotein translocase subunit YajC complement(936234..936569) Delftia acidovorans SPH-1 5746393 YP_001561871.1 CDS Daci_0840 NC_010002.1 936901 940482 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(936901..940482) Delftia acidovorans SPH-1 5746394 YP_001561872.1 CDS Daci_0841 NC_010002.1 940671 941174 D PFAM: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_4009 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 940671..941174 Delftia acidovorans SPH-1 5746395 YP_001561873.1 CDS Daci_0842 NC_010002.1 941336 943096 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; hypothetical protein 941336..943096 Delftia acidovorans SPH-1 5746396 YP_001561874.1 CDS Daci_0843 NC_010002.1 943344 944594 R PFAM: MltA domain protein; 3D domain protein; KEGG: ajs:Ajs_4013 MltA domain protein; MltA domain-containing protein complement(943344..944594) Delftia acidovorans SPH-1 5746397 YP_001561875.1 CDS Daci_0844 NC_010002.1 944844 945578 D PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_4652 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 944844..945578 Delftia acidovorans SPH-1 5746398 YP_001561876.1 CDS Daci_0845 NC_010002.1 945684 946958 D KEGG: rso:RSp1185 probable D-serine deaminase (d-serine dehydratase) protein; putative D-serine deaminase (d-serine dehydratase) protein 945684..946958 Delftia acidovorans SPH-1 5746399 YP_001561877.1 CDS Daci_0846 NC_010002.1 946964 947593 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: vei:Veis_4829 response regulator receiver protein; two component LuxR family transcriptional regulator complement(946964..947593) Delftia acidovorans SPH-1 5746400 YP_001561878.1 CDS Daci_0847 NC_010002.1 947610 949679 R KEGG: aav:Aave_4654 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(947610..949679) Delftia acidovorans SPH-1 5746401 YP_001561879.1 CDS Daci_0848 NC_010002.1 949697 950512 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aav:Aave_4655 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(949697..950512) Delftia acidovorans SPH-1 5746402 YP_001561880.1 CDS Daci_0849 NC_010002.1 950509 954663 R KEGG: aav:Aave_4656 hypothetical protein; hypothetical protein complement(950509..954663) Delftia acidovorans SPH-1 5746403 YP_001561881.1 CDS Daci_0850 NC_010002.1 954767 957532 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: ajs:Ajs_4019 (glutamate--ammonia-ligase) adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 954767..957532 Delftia acidovorans SPH-1 5746404 YP_001561882.1 CDS Daci_0851 NC_010002.1 957907 958527 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_4025 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(957907..958527) Delftia acidovorans SPH-1 5746405 YP_001561883.1 CDS Daci_0852 NC_010002.1 958577 960022 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 958577..960022 Delftia acidovorans SPH-1 5746406 YP_001561884.1 CDS Daci_0853 NC_010002.1 960027 961103 D PFAM: acyltransferase 3; KEGG: xom:XOO_0713 putative O-antigen acetylase; acyltransferase 3 960027..961103 Delftia acidovorans SPH-1 5746407 YP_001561885.1 CDS Daci_0854 NC_010002.1 961131 961691 D PFAM: YaeQ family protein; KEGG: ajs:Ajs_4027 YaeQ family protein; YaeQ family protein 961131..961691 Delftia acidovorans SPH-1 5746408 YP_001561886.1 CDS Daci_0855 NC_010002.1 961718 962431 R KEGG: rme:Rmet_4803 hypothetical protein; hypothetical protein complement(961718..962431) Delftia acidovorans SPH-1 5746409 YP_001561887.1 CDS Daci_0856 NC_010002.1 962843 963274 R PFAM: protein of unknown function DUF1289; KEGG: vei:Veis_2838 protein of unknown function DUF1289; hypothetical protein complement(962843..963274) Delftia acidovorans SPH-1 5746410 YP_001561888.1 CDS Daci_0857 NC_010002.1 963786 964526 D PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4030 integral membrane protein TerC; integral membrane protein TerC 963786..964526 Delftia acidovorans SPH-1 5746411 YP_001561889.1 CDS Daci_0858 NC_010002.1 964662 965120 D KEGG: aav:Aave_4674 hypothetical protein; hypothetical protein 964662..965120 Delftia acidovorans SPH-1 5746412 YP_001561890.1 CDS Daci_0859 NC_010002.1 965273 965620 D PFAM: membrane protein of unknown function; KEGG: vei:Veis_0393 membrane protein of unknown function; hypothetical protein 965273..965620 Delftia acidovorans SPH-1 5746413 YP_001561891.1 CDS Daci_0860 NC_010002.1 965594 967219 R PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_4033 peptidase M48, Ste24p; peptidase M48 Ste24p complement(965594..967219) Delftia acidovorans SPH-1 5746414 YP_001561892.1 CDS Daci_0861 NC_010002.1 967372 967842 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ajs:Ajs_4034 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 967372..967842 Delftia acidovorans SPH-1 5746415 YP_001561893.1 CDS Daci_0862 NC_010002.1 967920 968222 D hypothetical protein 967920..968222 Delftia acidovorans SPH-1 5746416 YP_001561894.1 CDS Daci_0863 NC_010002.1 968239 970182 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU2601 TPR domain/SEC-C motif domain protein; hypothetical protein 968239..970182 Delftia acidovorans SPH-1 5746417 YP_001561895.1 CDS Daci_0864 NC_010002.1 970388 970879 R KEGG: mpt:Mpe_A0065 pilin; pilin complement(970388..970879) Delftia acidovorans SPH-1 5746418 YP_001561896.1 CDS Daci_0865 NC_010002.1 971104 971817 R PFAM: Forkhead-associated protein; KEGG: aav:Aave_4680 FHA domain containing protein; FHA domain-containing protein complement(971104..971817) Delftia acidovorans SPH-1 5746419 YP_001561897.1 CDS Daci_0866 NC_010002.1 972061 972942 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: mpt:Mpe_A0068 serine/threonine specific protein phosphatase (putative); protein serine/threonine phosphatase complement(972061..972942) Delftia acidovorans SPH-1 5746420 YP_001561898.1 CDS Daci_0867 NC_010002.1 973139 973831 R PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4045 integral membrane protein TerC; integral membrane protein TerC complement(973139..973831) Delftia acidovorans SPH-1 5746421 YP_001561899.1 CDS Daci_0868 NC_010002.1 973998 974891 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(973998..974891) Delftia acidovorans SPH-1 5746422 YP_001561900.1 CDS sucC NC_010002.1 974912 976072 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(974912..976072) Delftia acidovorans SPH-1 5746423 YP_001561901.1 CDS Daci_0870 NC_010002.1 976509 977441 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 976509..977441 Delftia acidovorans SPH-1 5746424 YP_001561902.1 CDS Daci_0871 NC_010002.1 977438 979324 D KEGG: vei:Veis_0689 hypothetical protein; hypothetical protein 977438..979324 Delftia acidovorans SPH-1 5746425 YP_001561903.1 CDS Daci_0872 NC_010002.1 979347 980267 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: esa:ESA_02149 hypothetical protein; hypothetical protein 979347..980267 Delftia acidovorans SPH-1 5746426 YP_001561904.1 CDS Daci_0873 NC_010002.1 980264 980740 R KEGG: aav:Aave_4641 regulatory protein RecX; regulatory protein RecX complement(980264..980740) Delftia acidovorans SPH-1 5746427 YP_001561905.1 CDS Daci_0874 NC_010002.1 980943 982046 R KEGG: ajs:Ajs_4001 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein complement(980943..982046) Delftia acidovorans SPH-1 5746428 YP_001561906.1 CDS Daci_0875 NC_010002.1 982194 982694 D PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family; MarR family transcriptional regulator 982194..982694 Delftia acidovorans SPH-1 5746429 YP_001561907.1 CDS Daci_0876 NC_010002.1 982794 983468 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_3999 two component transcriptional regulator, winged helix family; two component transcriptional regulator 982794..983468 Delftia acidovorans SPH-1 5746430 YP_001561908.1 CDS Daci_0877 NC_010002.1 983563 985065 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: aav:Aave_4637 integral membrane sensor signal transduction histidine kinase; histidine kinase 983563..985065 Delftia acidovorans SPH-1 5746431 YP_001561909.1 CDS Daci_0878 NC_010002.1 985022 986032 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3997 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(985022..986032) Delftia acidovorans SPH-1 5746432 YP_001561910.1 CDS Daci_0879 NC_010002.1 986142 987110 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3996 uncharacterized protein UPF0065; hypothetical protein 986142..987110 Delftia acidovorans SPH-1 5746433 YP_001561911.1 CDS Daci_0880 NC_010002.1 987278 988210 D PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_3995 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 987278..988210 Delftia acidovorans SPH-1 5746434 YP_001561912.1 CDS Daci_0881 NC_010002.1 988286 989041 R PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein; sporulation domain-containing protein complement(988286..989041) Delftia acidovorans SPH-1 5746435 YP_001561913.1 CDS Daci_0882 NC_010002.1 989076 989906 R TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: aav:Aave_4629 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase complement(989076..989906) Delftia acidovorans SPH-1 5746436 YP_001561914.1 CDS Daci_0883 NC_010002.1 989903 990661 R PFAM: nuclear protein SET; KEGG: ajs:Ajs_3991 nuclear protein SET; nuclear protein SET complement(989903..990661) Delftia acidovorans SPH-1 5746437 YP_001561915.1 CDS Daci_0884 NC_010002.1 990694 993621 D decatenates replicating daughter chromosomes; DNA topoisomerase III 990694..993621 Delftia acidovorans SPH-1 5746438 YP_001561916.1 CDS Daci_0885 NC_010002.1 993777 994604 D KEGG: aav:Aave_4511 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase 993777..994604 Delftia acidovorans SPH-1 5746439 YP_001561917.1 CDS Daci_0886 NC_010002.1 995110 996297 D PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit 995110..996297 Delftia acidovorans SPH-1 5746440 YP_001561918.1 CDS Daci_0887 NC_010002.1 996639 999164 R PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rme:Rmet_4835 glycosyl transferase, family 51; peptidoglycan glycosyltransferase complement(996639..999164) Delftia acidovorans SPH-1 5746441 YP_001561919.1 CDS Daci_0888 NC_010002.1 999329 999913 R PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: aav:Aave_3866 ferritin, Dps family protein; ferritin Dps family protein complement(999329..999913) Delftia acidovorans SPH-1 5746442 YP_001561920.1 CDS Daci_0889 NC_010002.1 1000140 1000646 D PFAM: glutathione peroxidase; KEGG: ajs:Ajs_0173 glutathione peroxidase; glutathione peroxidase 1000140..1000646 Delftia acidovorans SPH-1 5746443 YP_001561921.1 CDS Daci_0890 NC_010002.1 1000776 1001840 D PFAM: Asparaginase/glutaminase; KEGG: har:HEAR1103 putative L-asparaginase; putative signal peptide protein; asparaginase 1000776..1001840 Delftia acidovorans SPH-1 5746444 YP_001561922.1 CDS Daci_0891 NC_010002.1 1001954 1002412 D PFAM: RDD domain containing protein; KEGG: aav:Aave_4623 RDD domain containing protein; RDD domain-containing protein 1001954..1002412 Delftia acidovorans SPH-1 5746445 YP_001561923.1 CDS Daci_0892 NC_010002.1 1002450 1002893 R KEGG: aav:Aave_0036 hypothetical protein; hypothetical protein complement(1002450..1002893) Delftia acidovorans SPH-1 5746446 YP_001561924.1 CDS Daci_0893 NC_010002.1 1003087 1003695 R hypothetical protein complement(1003087..1003695) Delftia acidovorans SPH-1 5746447 YP_001561925.1 CDS Daci_0894 NC_010002.1 1003951 1007448 R PFAM: SMC domain protein; KEGG: dar:Daro_1919 SMC protein, N-terminal; SMC domain-containing protein complement(1003951..1007448) Delftia acidovorans SPH-1 5746448 YP_001561926.1 CDS Daci_0895 NC_010002.1 1007445 1008722 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD complement(1007445..1008722) Delftia acidovorans SPH-1 5746449 YP_001561927.1 CDS Daci_0896 NC_010002.1 1008862 1009248 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1008862..1009248 Delftia acidovorans SPH-1 5746450 YP_001561928.1 CDS Daci_0897 NC_010002.1 1009388 1009828 R hypothetical protein complement(1009388..1009828) Delftia acidovorans SPH-1 5746451 YP_001561929.1 CDS Daci_0898 NC_010002.1 1010132 1010428 R KEGG: aav:Aave_4248 N-acetylmuramoyl-L-alanine amidase, family 2; hypothetical protein complement(1010132..1010428) Delftia acidovorans SPH-1 5746452 YP_001561930.1 CDS Daci_0899 NC_010002.1 1010795 1011442 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11; type 12 methyltransferase 1010795..1011442 Delftia acidovorans SPH-1 5746453 YP_001561931.1 CDS Daci_0900 NC_010002.1 1011451 1012296 D PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein; DTW domain-containing protein 1011451..1012296 Delftia acidovorans SPH-1 5746454 YP_001561932.1 CDS Daci_0901 NC_010002.1 1012807 1013955 D PFAM: acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3; acyltransferase 3 1012807..1013955 Delftia acidovorans SPH-1 5746455 YP_001561933.1 CDS Daci_0902 NC_010002.1 1014037 1014684 R PFAM: protein of unknown function DUF924; KEGG: tbd:Tbd_0861 hypothetical protein; hypothetical protein complement(1014037..1014684) Delftia acidovorans SPH-1 5746456 YP_001561934.1 CDS Daci_0903 NC_010002.1 1014884 1016272 R PFAM: HipA domain protein; KEGG: mxa:MXAN_0015 hypothetical protein; hypothetical protein complement(1014884..1016272) Delftia acidovorans SPH-1 5746457 YP_001561935.1 CDS Daci_0904 NC_010002.1 1016553 1017635 R PFAM: porin Gram-negative type; KEGG: pol:Bpro_4315 putative transmembrane outer membrane porin signal peptide protein; porin complement(1016553..1017635) Delftia acidovorans SPH-1 5746458 YP_001561936.1 CDS Daci_0905 NC_010002.1 1017855 1018478 D KEGG: ajs:Ajs_3969 hypothetical protein; hypothetical protein 1017855..1018478 Delftia acidovorans SPH-1 5746459 YP_001561937.1 CDS Daci_0906 NC_010002.1 1018518 1019504 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4203 uncharacterized protein UPF0065; hypothetical protein complement(1018518..1019504) Delftia acidovorans SPH-1 5746460 YP_001561938.1 CDS Daci_0907 NC_010002.1 1019647 1020369 D PFAM: Glutathione S-transferase domain; KEGG: cvi:CV_2745 probable glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 1019647..1020369 Delftia acidovorans SPH-1 5746461 YP_001561939.1 CDS Daci_0908 NC_010002.1 1020502 1021548 D PFAM: Pirin domain protein; KEGG: ajs:Ajs_3965 pirin domain protein domain protein; pirin domain-containing protein 1020502..1021548 Delftia acidovorans SPH-1 5746462 YP_001561940.1 CDS Daci_0909 NC_010002.1 1021575 1022027 R PFAM: Carboxymuconolactone decarboxylase; KEGG: mpt:Mpe_A3531 hydrolase or acyltransferase-like protein; carboxymuconolactone decarboxylase complement(1021575..1022027) Delftia acidovorans SPH-1 5746463 YP_001561941.1 CDS Daci_0910 NC_010002.1 1022044 1023420 R PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase; fumarate lyase complement(1022044..1023420) Delftia acidovorans SPH-1 5746464 YP_001561942.1 CDS Daci_0911 NC_010002.1 1023437 1024453 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_1233 uncharacterized protein UPF0065; hypothetical protein complement(1023437..1024453) Delftia acidovorans SPH-1 5746465 YP_001561943.1 CDS Daci_0912 NC_010002.1 1024545 1025456 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3047 transcriptional regulator, LysR family; LysR family transcriptional regulator 1024545..1025456 Delftia acidovorans SPH-1 5746466 YP_001561944.1 CDS Daci_0913 NC_010002.1 1025514 1026038 D KEGG: ajs:Ajs_3964 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1025514..1026038 Delftia acidovorans SPH-1 5746467 YP_001561945.1 CDS Daci_0914 NC_010002.1 1026126 1026971 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(1026126..1026971) Delftia acidovorans SPH-1 5746468 YP_001561946.1 CDS Daci_0915 NC_010002.1 1027019 1027360 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(1027019..1027360) Delftia acidovorans SPH-1 5746469 YP_001561947.1 CDS Daci_0916 NC_010002.1 1027437 1028456 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_2735 transcriptional regulator, LysR family; LysR family transcriptional regulator 1027437..1028456 Delftia acidovorans SPH-1 5746470 YP_001561948.1 CDS Daci_0917 NC_010002.1 1028358 1029239 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: ajs:Ajs_3963 peptidase C26; peptidase C26 complement(1028358..1029239) Delftia acidovorans SPH-1 5746471 YP_001561949.1 CDS Daci_0918 NC_010002.1 1029612 1029992 D KEGG: aav:Aave_4596 ribosomal subunit interface protein, putative; ribosomal subunit interface protein 1029612..1029992 Delftia acidovorans SPH-1 5746472 YP_001561950.1 CDS Daci_0919 NC_010002.1 1030093 1031109 R PFAM: Pirin domain protein; KEGG: csa:Csal_1778 pirin-like protein; pirin domain-containing protein complement(1030093..1031109) Delftia acidovorans SPH-1 5746473 YP_001561951.1 CDS Daci_0920 NC_010002.1 1031238 1031534 D hypothetical protein 1031238..1031534 Delftia acidovorans SPH-1 5746474 YP_001561952.1 CDS Daci_0921 NC_010002.1 1031616 1032026 R PFAM: OsmC family protein; KEGG: acb:A1S_1522 predicted redox disulfide bond formation protein OsmC-like protein; OsmC family protein complement(1031616..1032026) Delftia acidovorans SPH-1 5746475 YP_001561953.1 CDS Daci_0922 NC_010002.1 1032083 1032979 R PFAM: beta-lactamase domain protein; KEGG: rpa:RPA0365 beta-lactamase-like; beta-lactamase domain-containing protein complement(1032083..1032979) Delftia acidovorans SPH-1 5746476 YP_001561954.1 CDS Daci_0923 NC_010002.1 1033065 1033382 D PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: rme:Rmet_2370 transcriptional regulator, ArsR family; transcriptional regulator TrmB 1033065..1033382 Delftia acidovorans SPH-1 5746477 YP_001561955.1 CDS Daci_0924 NC_010002.1 1033410 1033940 D PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein; rhodanese domain-containing protein 1033410..1033940 Delftia acidovorans SPH-1 5746478 YP_001561956.1 CDS Daci_0925 NC_010002.1 1034040 1035422 D PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: ajs:Ajs_3957 peptidase M24; peptidase M24 1034040..1035422 Delftia acidovorans SPH-1 5746479 YP_001561957.1 CDS Daci_0926 NC_010002.1 1035415 1036233 D KEGG: csa:Csal_2373 abortive infection protein; abortive infection protein 1035415..1036233 Delftia acidovorans SPH-1 5746480 YP_001561958.1 CDS Daci_0927 NC_010002.1 1036236 1037501 R KEGG: rha:RHA1_ro07024 hypothetical protein; hypothetical protein complement(1036236..1037501) Delftia acidovorans SPH-1 5746481 YP_001561959.1 CDS Daci_0928 NC_010002.1 1037693 1039354 R PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4454 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(1037693..1039354) Delftia acidovorans SPH-1 5746482 YP_001561960.1 CDS Daci_0929 NC_010002.1 1039351 1040334 R KEGG: rme:Rmet_4455 hypothetical protein; hypothetical protein complement(1039351..1040334) Delftia acidovorans SPH-1 5746483 YP_001561961.1 CDS Daci_0930 NC_010002.1 1040708 1042144 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1040708..1042144 Delftia acidovorans SPH-1 5746484 YP_001561962.1 CDS Daci_0931 NC_010002.1 1042220 1042789 R PFAM: phosphoesterase PA-phosphatase related; KEGG: aav:Aave_4580 phosphoesterase, PA-phosphatase related protein; phosphoesterase PA-phosphatase-like protein complement(1042220..1042789) Delftia acidovorans SPH-1 5746485 YP_001561963.1 CDS Daci_0932 NC_010002.1 1042802 1043578 R KEGG: vei:Veis_0197 PAP2 (acid phosphatase) superfamily protein-like protein; PAP2 (acid phosphatase) superfamily protein-like protein complement(1042802..1043578) Delftia acidovorans SPH-1 5746486 YP_001561964.1 CDS Daci_0933 NC_010002.1 1043609 1044370 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4578 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1043609..1044370 Delftia acidovorans SPH-1 5746487 YP_001561965.1 CDS Daci_0934 NC_010002.1 1044367 1045737 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4577 histidine kinase; histidine kinase 1044367..1045737 Delftia acidovorans SPH-1 5746488 YP_001561966.1 CDS Daci_0935 NC_010002.1 1045819 1046931 D KEGG: aav:Aave_4576 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase 1045819..1046931 Delftia acidovorans SPH-1 5746489 YP_001561967.1 CDS Daci_0936 NC_010002.1 1046988 1047824 R KEGG: bbr:BB1856 putative integral membrane protein; putative integral membrane protein complement(1046988..1047824) Delftia acidovorans SPH-1 5746490 YP_001561968.1 CDS Daci_0937 NC_010002.1 1047957 1048775 R PFAM: Nucleotidyl transferase; KEGG: aav:Aave_4583 nucleotidyl transferase; nucleotidyl transferase complement(1047957..1048775) Delftia acidovorans SPH-1 5746491 YP_001561969.1 CDS Daci_0938 NC_010002.1 1048860 1050905 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ajs:Ajs_3959 transketolase; transketolase 1048860..1050905 Delftia acidovorans SPH-1 5746492 YP_001561970.1 CDS Daci_0939 NC_010002.1 1051015 1052016 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase 1051015..1052016 Delftia acidovorans SPH-1 5746493 YP_001561971.1 CDS Daci_0940 NC_010002.1 1052141 1052677 D KEGG: xac:XAC3665 hypothetical protein; hypothetical protein 1052141..1052677 Delftia acidovorans SPH-1 5746494 YP_001561972.1 CDS Daci_0941 NC_010002.1 1052732 1053118 D TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: mfa:Mfla_1103 secretion chaperone CsaA; export-like chaperone CsaA 1052732..1053118 Delftia acidovorans SPH-1 5746495 YP_001561973.1 CDS Daci_0942 NC_010002.1 1053119 1054093 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3412 uncharacterized protein UPF0065; hypothetical protein complement(1053119..1054093) Delftia acidovorans SPH-1 5746496 YP_001561974.1 CDS Daci_0943 NC_010002.1 1054090 1055343 R KEGG: rme:Rmet_3159 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(1054090..1055343) Delftia acidovorans SPH-1 5746497 YP_001561975.1 CDS Daci_0944 NC_010002.1 1055486 1056379 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_4004 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1055486..1056379) Delftia acidovorans SPH-1 5746498 YP_001561976.1 CDS Daci_0945 NC_010002.1 1056520 1057341 D PFAM: aldo/keto reductase; KEGG: esa:ESA_03132 hypothetical protein; aldo/keto reductase 1056520..1057341 Delftia acidovorans SPH-1 5746499 YP_001561977.1 CDS Daci_0946 NC_010002.1 1057498 1059177 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 1057498..1059177 Delftia acidovorans SPH-1 5746500 YP_001561978.1 CDS Daci_0947 NC_010002.1 1059246 1059392 R hypothetical protein complement(1059246..1059392) Delftia acidovorans SPH-1 5746501 YP_001561979.1 CDS Daci_0948 NC_010002.1 1059413 1059778 D PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator; AsnC family transcriptional regulator 1059413..1059778 Delftia acidovorans SPH-1 5746502 YP_001561980.1 CDS Daci_0949 NC_010002.1 1059964 1060494 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_3691 cupin 2, conserved barrel; cupin 1059964..1060494 Delftia acidovorans SPH-1 5746503 YP_001561981.1 CDS Daci_0950 NC_010002.1 1060509 1061363 D PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3690 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1060509..1061363 Delftia acidovorans SPH-1 5746504 YP_001561982.1 CDS Daci_0951 NC_010002.1 1061386 1062192 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_3689 transcriptional regulator, IclR family; IclR family transcriptional regulator 1061386..1062192 Delftia acidovorans SPH-1 5746505 YP_001561983.1 CDS Daci_0952 NC_010002.1 1062241 1063044 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 1062241..1063044 Delftia acidovorans SPH-1 5746506 YP_001561984.1 CDS Daci_0953 NC_010002.1 1063156 1063911 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1063156..1063911 Delftia acidovorans SPH-1 5746507 YP_001561985.1 CDS Daci_0954 NC_010002.1 1064136 1065323 D PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit 1064136..1065323 Delftia acidovorans SPH-1 5746508 YP_001561986.1 CDS Daci_0955 NC_010002.1 1065602 1065877 R KEGG: rso:RSc1866 hypothetical protein; hypothetical protein complement(1065602..1065877) Delftia acidovorans SPH-1 5746509 YP_001561987.1 CDS Daci_0956 NC_010002.1 1066710 1067480 D member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria; short chain dehydrogenase 1066710..1067480 Delftia acidovorans SPH-1 5746510 YP_001561988.1 CDS Daci_0957 NC_010002.1 1067493 1068380 D PFAM: regulatory protein MarR; regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_3689 transcriptional regulator, IclR family; IclR family transcriptional regulator 1067493..1068380 Delftia acidovorans SPH-1 5746511 YP_001561989.1 CDS Daci_0958 NC_010002.1 1068373 1069170 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3688 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 1068373..1069170 Delftia acidovorans SPH-1 5746512 YP_001561990.1 CDS Daci_0959 NC_010002.1 1069205 1070911 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: reu:Reut_B3575 hypothetical protein; hypothetical protein 1069205..1070911 Delftia acidovorans SPH-1 5746513 YP_001561991.1 CDS Daci_0960 NC_010002.1 1070947 1072422 D PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_3685 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 1070947..1072422 Delftia acidovorans SPH-1 5746514 YP_001561992.1 CDS Daci_0961 NC_010002.1 1072435 1073409 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3684 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1072435..1073409 Delftia acidovorans SPH-1 5746515 YP_001561993.1 CDS Daci_0962 NC_010002.1 1073460 1074437 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3683 twin-arginine translocation pathway signal; hypothetical protein 1073460..1074437 Delftia acidovorans SPH-1 5746516 YP_001561994.1 CDS Daci_0963 NC_010002.1 1074622 1074843 D KEGG: pol:Bpro_3682 hypothetical protein; hypothetical protein 1074622..1074843 Delftia acidovorans SPH-1 5746517 YP_001561995.1 CDS Daci_0964 NC_010002.1 1074868 1075893 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3681 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 1074868..1075893 Delftia acidovorans SPH-1 5746518 YP_001561996.1 CDS Daci_0965 NC_010002.1 1075890 1076849 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3680 ferredoxin; ferredoxin 1075890..1076849 Delftia acidovorans SPH-1 5746519 YP_001561997.1 CDS Daci_0966 NC_010002.1 1076929 1077996 D PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type; porin 1076929..1077996 Delftia acidovorans SPH-1 5746520 YP_001561998.1 CDS Daci_0967 NC_010002.1 1078026 1079321 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1; major facilitator transporter 1078026..1079321 Delftia acidovorans SPH-1 5746521 YP_001561999.1 CDS Daci_0968 NC_010002.1 1079329 1080237 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB0448 probable transcriptional regulator; LysR family transcriptional regulator complement(1079329..1080237) Delftia acidovorans SPH-1 5746522 YP_001562000.1 CDS Daci_0969 NC_010002.1 1080310 1080987 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpe:BP0523 probable haloacid dehalogenase; HAD family hydrolase 1080310..1080987 Delftia acidovorans SPH-1 5746523 YP_001562001.1 CDS Daci_0970 NC_010002.1 1081054 1082067 D PFAM: conserved hypothetical protein; KEGG: rpc:RPC_3267 uncharacterized protein UPF0065; hypothetical protein 1081054..1082067 Delftia acidovorans SPH-1 5746524 YP_001562002.1 CDS Daci_0971 NC_010002.1 1082087 1083229 D PFAM: alanine racemase domain protein; KEGG: bpe:BP0522 putative metal-activated pyridoxal enzyme; alanine racemase domain-containing protein 1082087..1083229 Delftia acidovorans SPH-1 5746525 YP_001562003.1 CDS Daci_0972 NC_010002.1 1083219 1083614 D PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB0442 hypothetical protein; endoribonuclease L-PSP 1083219..1083614 Delftia acidovorans SPH-1 5746526 YP_001562004.1 CDS Daci_0973 NC_010002.1 1083649 1084635 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: ajs:Ajs_3948 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(1083649..1084635) Delftia acidovorans SPH-1 5746527 YP_001562005.1 CDS Daci_0974 NC_010002.1 1084809 1085771 R KEGG: aav:Aave_4571 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(1084809..1085771) Delftia acidovorans SPH-1 5746528 YP_001562006.1 CDS Daci_0975 NC_010002.1 1085762 1086211 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_4570 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(1085762..1086211) Delftia acidovorans SPH-1 5746529 YP_001562007.1 CDS Daci_0976 NC_010002.1 1086283 1087134 R PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(1086283..1087134) Delftia acidovorans SPH-1 5746530 YP_001562008.1 CDS Daci_0977 NC_010002.1 1087249 1088661 D KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1087249..1088661 Delftia acidovorans SPH-1 5746531 YP_001562009.1 CDS Daci_0978 NC_010002.1 1088914 1090047 D PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_4567 phospholipase/lecithinase/hemolysin-like protein; GDSL family lipase 1088914..1090047 Delftia acidovorans SPH-1 5746532 YP_001562010.1 CDS Daci_0979 NC_010002.1 1090079 1090750 D PFAM: OmpW family protein; KEGG: aav:Aave_4566 OmpW family protein; OmpW family protein 1090079..1090750 Delftia acidovorans SPH-1 5746533 YP_001562011.1 CDS Daci_0980 NC_010002.1 1090815 1092353 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1090815..1092353) Delftia acidovorans SPH-1 5746534 YP_001562012.1 CDS Daci_0981 NC_010002.1 1092436 1093410 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5829 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 1092436..1093410 Delftia acidovorans SPH-1 5746535 YP_001562013.1 CDS Daci_0982 NC_010002.1 1093424 1094404 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B1814 probable extra-cytoplasmic solute receptor; hypothetical protein complement(1093424..1094404) Delftia acidovorans SPH-1 5746536 YP_001562014.1 CDS Daci_0983 NC_010002.1 1094447 1095466 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_0062 uncharacterized protein UPF0065; hypothetical protein complement(1094447..1095466) Delftia acidovorans SPH-1 5746537 YP_001562015.1 CDS Daci_0984 NC_010002.1 1095511 1096314 R PFAM: Myo-inositol catabolism IolB domain protein; KEGG: vei:Veis_0068 myo-inositol catabolism IolB domain protein; myo-inositol catabolism IolB domain-containing protein complement(1095511..1096314) Delftia acidovorans SPH-1 5746538 YP_001562016.1 CDS Daci_0985 NC_010002.1 1096311 1098290 R PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein; ribokinase-like domain-containing protein complement(1096311..1098290) Delftia acidovorans SPH-1 5746539 YP_001562017.1 CDS Daci_0986 NC_010002.1 1098385 1099284 D PFAM: sugar isomerase (SIS); KEGG: vei:Veis_4368 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1098385..1099284 Delftia acidovorans SPH-1 5746540 YP_001562018.1 CDS Daci_0987 NC_010002.1 1099321 1100025 R KEGG: ppr:PBPRC0042 hypothetical protein; hypothetical protein complement(1099321..1100025) Delftia acidovorans SPH-1 5746541 YP_001562019.1 CDS Daci_0988 NC_010002.1 1100225 1101223 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: ajs:Ajs_3936 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(1100225..1101223) Delftia acidovorans SPH-1 5746542 YP_001562020.1 CDS Daci_0989 NC_010002.1 1101235 1102398 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1101235..1102398) Delftia acidovorans SPH-1 5746543 YP_001562021.1 CDS Daci_0990 NC_010002.1 1102395 1102892 R KEGG: ajs:Ajs_3934 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1102395..1102892) Delftia acidovorans SPH-1 5746544 YP_001562022.1 CDS Daci_0991 NC_010002.1 1102976 1104364 R KEGG: mpt:Mpe_A0314 hypothetical protein; hypothetical protein complement(1102976..1104364) Delftia acidovorans SPH-1 5746545 YP_001562023.1 CDS Daci_0992 NC_010002.1 1104361 1105347 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0313 ABC-type multidrug transport system ATPase component-like protein; ABC transporter-like protein complement(1104361..1105347) Delftia acidovorans SPH-1 5746546 YP_001562024.1 CDS Daci_0993 NC_010002.1 1105623 1106579 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ajs:Ajs_3931 thioredoxin; thioredoxin 1105623..1106579 Delftia acidovorans SPH-1 5746547 YP_001562025.1 CDS Daci_0994 NC_010002.1 1106644 1107462 R KEGG: bur:Bcep18194_A5272 hypothetical protein; hypothetical protein complement(1106644..1107462) Delftia acidovorans SPH-1 5746548 YP_001562026.1 CDS Daci_0995 NC_010002.1 1107547 1108458 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A5271 transcriptional regulator, LysR family; LysR family transcriptional regulator 1107547..1108458 Delftia acidovorans SPH-1 5746549 YP_001562027.1 CDS Daci_0996 NC_010002.1 1108462 1109358 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1047 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1108462..1109358) Delftia acidovorans SPH-1 5746550 YP_001562028.1 CDS Daci_0997 NC_010002.1 1109453 1110313 D KEGG: pol:Bpro_4689 protein of unknown function DUF6, transmembrane; hypothetical protein 1109453..1110313 Delftia acidovorans SPH-1 5746551 YP_001562029.1 CDS Daci_0998 NC_010002.1 1110343 1110927 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: ajs:Ajs_3932 intracellular protease, PfpI family; PfpI family intracellular peptidase complement(1110343..1110927) Delftia acidovorans SPH-1 5746552 YP_001562030.1 CDS Daci_0999 NC_010002.1 1111086 1112009 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1111086..1112009) Delftia acidovorans SPH-1 5746553 YP_001562031.1 CDS Daci_1000 NC_010002.1 1112374 1112733 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ajs:Ajs_3927 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 1112374..1112733 Delftia acidovorans SPH-1 5746554 YP_001562032.1 CDS Daci_1001 NC_010002.1 1112829 1113362 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: aav:Aave_4557 putative PTS IIA-like nitrogen-regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 1112829..1113362 Delftia acidovorans SPH-1 5746555 YP_001562033.1 CDS Daci_1002 NC_010002.1 1113403 1114359 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1113403..1114359 Delftia acidovorans SPH-1 5746556 YP_001562034.1 CDS Daci_1003 NC_010002.1 1114513 1116789 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN4326 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor 1114513..1116789 Delftia acidovorans SPH-1 5746557 YP_001562035.1 CDS Daci_1004 NC_010002.1 1116794 1118569 D PFAM: putative esterase; KEGG: bur:Bcep18194_A5450 putative esterase; putative esterase 1116794..1118569 Delftia acidovorans SPH-1 5746558 YP_001562036.1 CDS Daci_1005 NC_010002.1 1118569 1119594 D PFAM: periplasmic binding protein; KEGG: oan:Oant_3797 periplasmic binding protein; periplasmic-binding protein 1118569..1119594 Delftia acidovorans SPH-1 5746559 YP_001562037.1 CDS Daci_1006 NC_010002.1 1119575 1120624 D PFAM: transport system permease protein; KEGG: bov:BOV_A0633 iron compound ABC transporter, permease protein; transport system permease 1119575..1120624 Delftia acidovorans SPH-1 5746560 YP_001562038.1 CDS Daci_1007 NC_010002.1 1120621 1121619 D PFAM: transport system permease protein; KEGG: atc:AGR_C_4491 ferrichrome ABC transporter (permease) homolog; transport system permease 1120621..1121619 Delftia acidovorans SPH-1 5746561 YP_001562039.1 CDS Daci_1008 NC_010002.1 1121616 1122374 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_3854 putative iron ABC transporter, ATP-binding protein; ABC transporter-like protein 1121616..1122374 Delftia acidovorans SPH-1 5746562 YP_001562040.1 CDS Daci_1009 NC_010002.1 1122555 1123721 R TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: ajs:Ajs_0374 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase complement(1122555..1123721) Delftia acidovorans SPH-1 5746563 YP_001562041.1 CDS Daci_1010 NC_010002.1 1123754 1125013 R KEGG: aav:Aave_0592 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(1123754..1125013) Delftia acidovorans SPH-1 5746564 YP_001562042.1 CDS Daci_1011 NC_010002.1 1125208 1127448 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1125208..1127448 Delftia acidovorans SPH-1 5746565 YP_001562043.1 CDS Daci_1012 NC_010002.1 1127785 1128558 D PFAM: MHYT domain protein; KEGG: bbr:BB1820 hypothetical protein; putative integral membrane sensor protein 1127785..1128558 Delftia acidovorans SPH-1 5746566 YP_001562044.1 CDS Daci_1013 NC_010002.1 1128785 1129750 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0377 transcriptional regulator, LysR family; LysR family transcriptional regulator 1128785..1129750 Delftia acidovorans SPH-1 5746567 YP_001562045.1 CDS Daci_1014 NC_010002.1 1129871 1130476 D PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; ferritin Dps family protein 1129871..1130476 Delftia acidovorans SPH-1 5746568 YP_001562046.1 CDS Daci_1015 NC_010002.1 1130536 1131333 D PFAM: phosphoesterase PA-phosphatase related; KEGG: aav:Aave_3491 phosphoesterase, PA-phosphatase related protein; phosphoesterase PA-phosphatase-like protein 1130536..1131333 Delftia acidovorans SPH-1 5746569 YP_001562047.1 CDS Daci_1016 NC_010002.1 1131435 1132328 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: ajs:Ajs_0380 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate polyprenyltransferase 1131435..1132328 Delftia acidovorans SPH-1 5746570 YP_001562048.1 CDS Daci_1017 NC_010002.1 1132401 1133240 R KEGG: ajs:Ajs_0381 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(1132401..1133240) Delftia acidovorans SPH-1 5746571 YP_001562049.1 CDS Daci_1018 NC_010002.1 1133273 1134064 R KEGG: rpa:RPA2648 hypothetical protein; hypothetical protein complement(1133273..1134064) Delftia acidovorans SPH-1 5746572 YP_001562050.1 CDS Daci_1019 NC_010002.1 1134104 1135096 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5038 uncharacterized protein UPF0065; hypothetical protein complement(1134104..1135096) Delftia acidovorans SPH-1 5746573 YP_001562051.1 CDS Daci_1020 NC_010002.1 1135161 1136858 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: reh:H16_B0313 acetolactate synthase large subunit (TPP dependent); thiamine pyrophosphate-binding domain-containing protein complement(1135161..1136858) Delftia acidovorans SPH-1 5746574 YP_001562052.1 CDS Daci_1021 NC_010002.1 1136955 1137650 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_B0314 transcriptional regulator, GntR-family; GntR family transcriptional regulator 1136955..1137650 Delftia acidovorans SPH-1 5746575 YP_001562053.1 CDS Daci_1022 NC_010002.1 1137658 1138863 R KEGG: aav:Aave_3774 hypothetical protein; hypothetical protein complement(1137658..1138863) Delftia acidovorans SPH-1 5746576 YP_001562054.1 CDS Daci_1023 NC_010002.1 1138832 1140328 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: ajs:Ajs_0382 glycerol kinase; glycerol kinase complement(1138832..1140328) Delftia acidovorans SPH-1 5746577 YP_001562055.1 CDS Daci_1024 NC_010002.1 1140402 1141166 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: aav:Aave_0603 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(1140402..1141166) Delftia acidovorans SPH-1 5746578 YP_001562056.1 CDS Daci_1025 NC_010002.1 1141353 1142516 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_0604 ABC transporter-related protein; ABC transporter-like protein 1141353..1142516 Delftia acidovorans SPH-1 5746579 YP_001562057.1 CDS Daci_1026 NC_010002.1 1142518 1143600 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_0605 ABC transporter-related protein; ABC transporter-like protein 1142518..1143600 Delftia acidovorans SPH-1 5746580 YP_001562058.1 CDS Daci_1027 NC_010002.1 1143597 1144490 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_0606 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1143597..1144490 Delftia acidovorans SPH-1 5746581 YP_001562059.1 CDS Daci_1028 NC_010002.1 1144566 1145381 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0387 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1144566..1145381 Delftia acidovorans SPH-1 5746582 YP_001562060.1 CDS Daci_1029 NC_010002.1 1145542 1145850 D KEGG: ajs:Ajs_0388 putative integral membrane protein; putative integral membrane protein 1145542..1145850 Delftia acidovorans SPH-1 5746583 YP_001562061.1 CDS Daci_1030 NC_010002.1 1145951 1147684 D KEGG: aav:Aave_0609 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1145951..1147684 Delftia acidovorans SPH-1 5746584 YP_001562062.1 CDS Daci_1031 NC_010002.1 1148029 1149618 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: aav:Aave_0610 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1148029..1149618 Delftia acidovorans SPH-1 5746585 YP_001562063.1 CDS Daci_1032 NC_010002.1 1150307 1150675 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: vei:Veis_2315 ribosomal protein L14; 50S ribosomal protein L14 1150307..1150675 Delftia acidovorans SPH-1 5746586 YP_001562064.1 CDS rplX NC_010002.1 1150686 1151006 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1150686..1151006 Delftia acidovorans SPH-1 5746587 YP_001562065.1 CDS rplE NC_010002.1 1151017 1151556 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1151017..1151556 Delftia acidovorans SPH-1 5746588 YP_001562066.1 CDS rpsN NC_010002.1 1151565 1151870 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1151565..1151870 Delftia acidovorans SPH-1 5746589 YP_001562067.1 CDS rpsH NC_010002.1 1151891 1152286 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1151891..1152286 Delftia acidovorans SPH-1 5746590 YP_001562068.1 CDS rplF NC_010002.1 1152311 1152844 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1152311..1152844 Delftia acidovorans SPH-1 5746591 YP_001562069.1 CDS rplR NC_010002.1 1152856 1153221 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1152856..1153221 Delftia acidovorans SPH-1 5746592 YP_001562070.1 CDS rpsE NC_010002.1 1153237 1153758 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1153237..1153758 Delftia acidovorans SPH-1 5746593 YP_001562071.1 CDS rpmD NC_010002.1 1153773 1153955 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1153773..1153955 Delftia acidovorans SPH-1 5746594 YP_001562072.1 CDS rplO NC_010002.1 1153967 1154398 D late assembly protein; 50S ribosomal protein L15 1153967..1154398 Delftia acidovorans SPH-1 5746595 YP_001562073.1 CDS secY NC_010002.1 1154423 1155742 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1154423..1155742 Delftia acidovorans SPH-1 5746596 YP_001562074.1 CDS rpsM NC_010002.1 1156011 1156376 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1156011..1156376 Delftia acidovorans SPH-1 5746598 YP_001562075.1 CDS Daci_1045 NC_010002.1 1156395 1156799 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1156395..1156799 Delftia acidovorans SPH-1 5746599 YP_001562076.1 CDS rpsD NC_010002.1 1156890 1157513 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1156890..1157513 Delftia acidovorans SPH-1 5746600 YP_001562077.1 CDS Daci_1047 NC_010002.1 1157626 1158624 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1157626..1158624 Delftia acidovorans SPH-1 5746601 YP_001562078.1 CDS Daci_1048 NC_010002.1 1158811 1159203 D PFAM: ribosomal protein L17; KEGG: ajs:Ajs_0407 ribosomal protein L17; 50S ribosomal protein L17 1158811..1159203 Delftia acidovorans SPH-1 5746602 YP_001562079.1 CDS Daci_1049 NC_010002.1 1159384 1159701 R KEGG: rso:RS02287 hypothetical protein; hypothetical protein complement(1159384..1159701) Delftia acidovorans SPH-1 5746604 YP_001562080.1 CDS Daci_1050 NC_010002.1 1159996 1161501 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: rme:Rmet_4303 anion transporter; anion transporter 1159996..1161501 Delftia acidovorans SPH-1 5746605 YP_001562081.1 CDS Daci_1051 NC_010002.1 1161514 1162101 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll6900 hypothetical protein; hypothetical protein complement(1161514..1162101) Delftia acidovorans SPH-1 5746606 YP_001562082.1 CDS Daci_1052 NC_010002.1 1162098 1162793 R KEGG: bbt:BBta_4849 hypothetical protein; hypothetical protein complement(1162098..1162793) Delftia acidovorans SPH-1 5746607 YP_001562083.1 CDS Daci_1053 NC_010002.1 1162790 1163920 R PFAM: luciferase family protein; KEGG: bbt:BBta_4850 hypothetical protein; luciferase family protein complement(1162790..1163920) Delftia acidovorans SPH-1 5746608 YP_001562084.1 CDS Daci_1054 NC_010002.1 1163901 1165592 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0072 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1163901..1165592) Delftia acidovorans SPH-1 5746609 YP_001562085.1 CDS Daci_1055 NC_010002.1 1165589 1166545 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4852 putative ABC transporter (permease protein); binding-protein-dependent transport system inner membrane protein complement(1165589..1166545) Delftia acidovorans SPH-1 5746610 YP_001562086.1 CDS Daci_1056 NC_010002.1 1166542 1167489 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0074 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(1166542..1167489) Delftia acidovorans SPH-1 5746611 YP_001562087.1 CDS Daci_1057 NC_010002.1 1167518 1169191 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0075 ABC-type transporter, substrate binding protein; extracellular solute-binding protein complement(1167518..1169191) Delftia acidovorans SPH-1 5746612 YP_001562088.1 CDS Daci_1058 NC_010002.1 1169393 1169995 D PFAM: OsmC family protein; KEGG: bur:Bcep18194_C7506 hypothetical protein; OsmC family protein 1169393..1169995 Delftia acidovorans SPH-1 5746613 YP_001562089.1 CDS Daci_1059 NC_010002.1 1170021 1170845 D KEGG: rpa:RPA2648 hypothetical protein; hypothetical protein 1170021..1170845 Delftia acidovorans SPH-1 5746614 YP_001562090.1 CDS Daci_1060 NC_010002.1 1170887 1172218 D KEGG: aav:Aave_0628 molecular chaperone, HSP70 class; molecular chaperone, HSP70 class 1170887..1172218 Delftia acidovorans SPH-1 5746615 YP_001562091.1 CDS Daci_1061 NC_010002.1 1172344 1173285 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aav:Aave_0629 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(1172344..1173285) Delftia acidovorans SPH-1 5746616 YP_001562092.1 CDS Daci_1062 NC_010002.1 1173285 1173701 D PFAM: protein of unknown function UPF0102; KEGG: aav:Aave_0630 protein of unknown function UPF0102; hypothetical protein 1173285..1173701 Delftia acidovorans SPH-1 5746617 YP_001562093.1 CDS Daci_1063 NC_010002.1 1173775 1174383 D KEGG: ajs:Ajs_0415 phosphoheptose isomerase; phosphoheptose isomerase 1173775..1174383 Delftia acidovorans SPH-1 5746618 YP_001562094.1 CDS Daci_1064 NC_010002.1 1174380 1175111 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: vei:Veis_0628 transport-associated; transport-associated protein 1174380..1175111 Delftia acidovorans SPH-1 5746619 YP_001562095.1 CDS Daci_1065 NC_010002.1 1175311 1176222 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_0417 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(1175311..1176222) Delftia acidovorans SPH-1 5746620 YP_001562096.1 CDS Daci_1066 NC_010002.1 1176348 1177484 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aav:Aave_0635 twitching motility protein; twitching motility protein complement(1176348..1177484) Delftia acidovorans SPH-1 5746621 YP_001562097.1 CDS Daci_1067 NC_010002.1 1177606 1178238 R PFAM: cyclic nucleotide-binding; KEGG: aav:Aave_0636 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(1177606..1178238) Delftia acidovorans SPH-1 5746622 YP_001562098.1 CDS Daci_1068 NC_010002.1 1178270 1179313 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aav:Aave_0637 twitching motility protein; twitching motility protein complement(1178270..1179313) Delftia acidovorans SPH-1 5746623 YP_001562099.1 CDS Daci_1069 NC_010002.1 1179351 1180076 D PFAM: alanine racemase domain protein; KEGG: aav:Aave_0638 alanine racemase domain protein; alanine racemase domain-containing protein 1179351..1180076 Delftia acidovorans SPH-1 5746624 YP_001562100.1 CDS Daci_1070 NC_010002.1 1180115 1181398 R PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_1685 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1180115..1181398) Delftia acidovorans SPH-1 5746625 YP_001562101.1 CDS Daci_1071 NC_010002.1 1181425 1182147 R PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3897 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1181425..1182147) Delftia acidovorans SPH-1 5746626 YP_001562102.1 CDS Daci_1072 NC_010002.1 1182307 1183905 D PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1683 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 1182307..1183905 Delftia acidovorans SPH-1 5746627 YP_001562103.1 CDS Daci_1073 NC_010002.1 1184052 1187345 D PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: vei:Veis_1682 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L 1184052..1187345 Delftia acidovorans SPH-1 5746628 YP_001562104.1 CDS Daci_1074 NC_010002.1 1187446 1188588 D PFAM: aminotransferase class V; KEGG: ajs:Ajs_0422 aminotransferase, class V; class V aminotransferase 1187446..1188588 Delftia acidovorans SPH-1 5746629 YP_001562105.1 CDS Daci_1075 NC_010002.1 1188622 1189041 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ajs:Ajs_1935 peptidylprolyl isomerase, FKBP-type; peptidyl-prolyl isomerase 1188622..1189041 Delftia acidovorans SPH-1 5746630 YP_001562106.1 CDS Daci_1076 NC_010002.1 1189130 1190044 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0410 protein of unknown function DUF6, transmembrane; hypothetical protein 1189130..1190044 Delftia acidovorans SPH-1 5746631 YP_001562107.1 CDS Daci_1077 NC_010002.1 1190054 1191235 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pde:Pden_3305 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(1190054..1191235) Delftia acidovorans SPH-1 5746632 YP_001562108.1 CDS Daci_1078 NC_010002.1 1191360 1192931 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(1191360..1192931) Delftia acidovorans SPH-1 5746633 YP_001562109.1 CDS Daci_1079 NC_010002.1 1193052 1194278 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 1193052..1194278 Delftia acidovorans SPH-1 5746634 YP_001562110.1 CDS Daci_1080 NC_010002.1 1194358 1196268 R KEGG: aav:Aave_0649 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1194358..1196268) Delftia acidovorans SPH-1 5746635 YP_001562111.1 CDS purU NC_010002.1 1196312 1197235 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1196312..1197235 Delftia acidovorans SPH-1 5746636 YP_001562112.1 CDS Daci_1082 NC_010002.1 1197255 1198178 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0647 transcriptional regulator, LysR family; LysR family transcriptional regulator 1197255..1198178 Delftia acidovorans SPH-1 5746637 YP_001562113.1 CDS Daci_1083 NC_010002.1 1198279 1199832 D PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_0645 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1198279..1199832 Delftia acidovorans SPH-1 5746638 YP_001562114.1 CDS Daci_1084 NC_010002.1 1199909 1200931 R KEGG: cfa:482083 plectin 1, intermediate filament binding protein 500kDa; hypothetical protein complement(1199909..1200931) Delftia acidovorans SPH-1 5746639 YP_001562115.1 CDS Daci_1085 NC_010002.1 1201095 1201472 D KEGG: aav:Aave_0643 hypothetical protein; hypothetical protein 1201095..1201472 Delftia acidovorans SPH-1 5746640 YP_001562116.1 CDS Daci_1086 NC_010002.1 1201535 1201885 R KEGG: ajs:Ajs_2662 hypothetical protein; hypothetical protein complement(1201535..1201885) Delftia acidovorans SPH-1 5746641 YP_001562117.1 CDS Daci_1087 NC_010002.1 1202095 1205280 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1849 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(1202095..1205280) Delftia acidovorans SPH-1 5746642 YP_001562118.1 CDS Daci_1088 NC_010002.1 1205292 1206671 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mms:mma_1793 cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit complement(1205292..1206671) Delftia acidovorans SPH-1 5746643 YP_001562119.1 CDS Daci_1089 NC_010002.1 1206702 1208036 R PFAM: outer membrane efflux protein; KEGG: har:HEAR1614 cobalt-zinc-cadmium resistance protein CzcC precursor (cation efflux system protein CzcC); outer membrane efflux protein complement(1206702..1208036) Delftia acidovorans SPH-1 5746644 YP_001562120.1 CDS Daci_1090 NC_010002.1 1208204 1208620 R KEGG: ajs:Ajs_1846 hypothetical protein; hypothetical protein complement(1208204..1208620) Delftia acidovorans SPH-1 5746645 YP_001562121.1 CDS Daci_1091 NC_010002.1 1208765 1209463 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A1629 two-component response regulator; two component heavy metal response transcriptional regulator 1208765..1209463 Delftia acidovorans SPH-1 5746646 YP_001562122.1 CDS Daci_1092 NC_010002.1 1209460 1210854 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1630 putative two-component sensor; heavy metal sensor signal transduction histidine kinase 1209460..1210854 Delftia acidovorans SPH-1 5746647 YP_001562123.1 CDS Daci_1093 NC_010002.1 1210890 1211318 D hypothetical protein 1210890..1211318 Delftia acidovorans SPH-1 5746648 YP_001562124.1 CDS Daci_1094 NC_010002.1 1211326 1211763 R PFAM: thioesterase superfamily protein; KEGG: reh:H16_A0241 uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase superfamily protein complement(1211326..1211763) Delftia acidovorans SPH-1 5746649 YP_001562125.1 CDS Daci_1095 NC_010002.1 1211760 1211984 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vei:Veis_0828 biotin/lipoyl attachment domain-containing protein; biotin/lipoyl attachment domain-containing protein complement(1211760..1211984) Delftia acidovorans SPH-1 5746650 YP_001562126.1 CDS Daci_1096 NC_010002.1 1211996 1213357 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bbr:BB2689 biotin carboxylase; carbamoyl-phosphate synthase subunit L complement(1211996..1213357) Delftia acidovorans SPH-1 5746651 YP_001562127.1 CDS Daci_1097 NC_010002.1 1213354 1215462 R PFAM: CoA-binding domain protein; KEGG: vei:Veis_0829 CoA-binding domain protein; CoA-binding domain-containing protein complement(1213354..1215462) Delftia acidovorans SPH-1 5746652 YP_001562128.1 CDS Daci_1098 NC_010002.1 1215473 1216492 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4969 uncharacterized protein UPF0065; hypothetical protein complement(1215473..1216492) Delftia acidovorans SPH-1 5746653 YP_001562129.1 CDS Daci_1099 NC_010002.1 1216522 1218069 R PFAM: carboxyl transferase; KEGG: reu:Reut_B3891 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(1216522..1218069) Delftia acidovorans SPH-1 5746654 YP_001562130.1 CDS Daci_1100 NC_010002.1 1218214 1219974 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B3890 helix-turn-helix, fis-type; putative sigma-54 specific transcriptional regulator 1218214..1219974 Delftia acidovorans SPH-1 5746655 YP_001562131.1 CDS Daci_1101 NC_010002.1 1220102 1221073 D PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2614 putative efflux protein; bile acid:sodium symporter 1220102..1221073 Delftia acidovorans SPH-1 5746656 YP_001562132.1 CDS Daci_1102 NC_010002.1 1221074 1222402 R PFAM: protein of unknown function DUF445; KEGG: aav:Aave_0641 protein of unknown function DUF445; hypothetical protein complement(1221074..1222402) Delftia acidovorans SPH-1 5746657 YP_001562133.1 CDS Daci_1103 NC_010002.1 1222500 1222757 D KEGG: aav:Aave_0028 hypothetical protein; hypothetical protein 1222500..1222757 Delftia acidovorans SPH-1 5746658 YP_001562134.1 CDS Daci_1104 NC_010002.1 1222809 1223684 R KEGG: ajs:Ajs_0430 hypothetical protein; hypothetical protein complement(1222809..1223684) Delftia acidovorans SPH-1 5746659 YP_001562135.1 CDS Daci_1105 NC_010002.1 1223846 1225744 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ajs:Ajs_0432 multi-sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 1223846..1225744 Delftia acidovorans SPH-1 5746660 YP_001562136.1 CDS Daci_1106 NC_010002.1 1225773 1226444 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: ajs:Ajs_0433 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1225773..1226444 Delftia acidovorans SPH-1 5746661 YP_001562137.1 CDS Daci_1107 NC_010002.1 1226870 1228192 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0659 major facilitator superfamily MFS_1; major facilitator transporter 1226870..1228192 Delftia acidovorans SPH-1 5746662 YP_001562138.1 CDS Daci_1108 NC_010002.1 1228209 1229669 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0660 nitrite transporter; nitrite transporter 1228209..1229669 Delftia acidovorans SPH-1 5746663 YP_001562139.1 CDS Daci_1109 NC_010002.1 1229737 1233576 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_0436 nitrate reductase, alpha subunit; nitrate reductase subunit alpha 1229737..1233576 Delftia acidovorans SPH-1 5746664 YP_001562140.1 CDS Daci_1110 NC_010002.1 1233754 1235295 D TIGRFAM: nitrate reductase, beta subunit; KEGG: ajs:Ajs_0437 nitrate reductase, beta subunit; nitrate reductase subunit beta 1233754..1235295 Delftia acidovorans SPH-1 5746665 YP_001562141.1 CDS Daci_1111 NC_010002.1 1235307 1236020 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: ajs:Ajs_0438 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 1235307..1236020 Delftia acidovorans SPH-1 5746666 YP_001562142.1 CDS Daci_1112 NC_010002.1 1236017 1236754 D KEGG: ajs:Ajs_0439 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 1236017..1236754 Delftia acidovorans SPH-1 5746667 YP_001562143.1 CDS Daci_1113 NC_010002.1 1236765 1237667 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_0440 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1236765..1237667 Delftia acidovorans SPH-1 5746668 YP_001562144.1 CDS Daci_1114 NC_010002.1 1237676 1238368 D PFAM: carbonic anhydrase; KEGG: ajs:Ajs_0441 carbonate dehydratase; carbonate dehydratase 1237676..1238368 Delftia acidovorans SPH-1 5746669 YP_001562145.1 CDS Daci_1115 NC_010002.1 1238346 1240868 D KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase 1238346..1240868 Delftia acidovorans SPH-1 5746670 YP_001562146.1 CDS Daci_1116 NC_010002.1 1240865 1241443 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aav:Aave_0669 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 1240865..1241443 Delftia acidovorans SPH-1 5746671 YP_001562147.1 CDS Daci_1117 NC_010002.1 1241515 1242609 D TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: pol:Bpro_0442 putative ammonia monooxygenase; membrane protein AbrB 1241515..1242609 Delftia acidovorans SPH-1 5746672 YP_001562148.1 CDS Daci_1118 NC_010002.1 1242618 1243184 R KEGG: reh:H16_B1196 transcriptional regulator, GlpP-family; GlpP family transcriptional regulator complement(1242618..1243184) Delftia acidovorans SPH-1 5746673 YP_001562149.1 CDS Daci_1119 NC_010002.1 1243186 1244736 R PFAM: FAD linked oxidase domain protein; KEGG: reh:H16_B1197 alkyldihydroxyacetonephosphate synthase; FAD linked oxidase domain-containing protein complement(1243186..1244736) Delftia acidovorans SPH-1 5746674 YP_001562150.1 CDS Daci_1120 NC_010002.1 1244730 1246412 R PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_B2081 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1244730..1246412) Delftia acidovorans SPH-1 5746675 YP_001562151.1 CDS Daci_1121 NC_010002.1 1246409 1247950 R PFAM: carbohydrate kinase FGGY; KEGG: rme:Rmet_5445 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(1246409..1247950) Delftia acidovorans SPH-1 5746676 YP_001562152.1 CDS Daci_1122 NC_010002.1 1247964 1249412 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1200 putative MFS transporter; major facilitator transporter complement(1247964..1249412) Delftia acidovorans SPH-1 5746677 YP_001562153.1 CDS Daci_1123 NC_010002.1 1249654 1249947 R KEGG: vei:Veis_0989 hypothetical protein; hypothetical protein complement(1249654..1249947) Delftia acidovorans SPH-1 5746678 YP_001562154.1 CDS Daci_1124 NC_010002.1 1250153 1251349 R KEGG: ajs:Ajs_0447 hypothetical protein; hypothetical protein complement(1250153..1251349) Delftia acidovorans SPH-1 5746679 YP_001562155.1 CDS Daci_1125 NC_010002.1 1251478 1252257 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: aav:Aave_0741 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1251478..1252257) Delftia acidovorans SPH-1 5746680 YP_001562156.1 CDS Daci_1126 NC_010002.1 1252384 1253406 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_0742 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1252384..1253406 Delftia acidovorans SPH-1 5746681 YP_001562157.1 CDS Daci_1127 NC_010002.1 1253403 1254416 D PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein; GumN family protein 1253403..1254416 Delftia acidovorans SPH-1 5746682 YP_001562158.1 CDS Daci_1128 NC_010002.1 1254498 1255472 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_0744 uncharacterized protein UPF0065; hypothetical protein 1254498..1255472 Delftia acidovorans SPH-1 5746683 YP_001562159.1 CDS Daci_1129 NC_010002.1 1255637 1257397 R PFAM: ABC-1 domain protein; KEGG: spe:Spro_2799 ABC-1 domain protein; hypothetical protein complement(1255637..1257397) Delftia acidovorans SPH-1 5746684 YP_001562160.1 CDS Daci_1130 NC_010002.1 1257488 1259671 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: aav:Aave_0767 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(1257488..1259671) Delftia acidovorans SPH-1 5746685 YP_001562161.1 CDS Daci_1131 NC_010002.1 1259765 1260922 D PFAM: Extracellular ligand-binding receptor; KEGG: aav:Aave_0768 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1259765..1260922 Delftia acidovorans SPH-1 5746686 YP_001562162.1 CDS Daci_1132 NC_010002.1 1260949 1262157 D KEGG: aav:Aave_0770 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1260949..1262157 Delftia acidovorans SPH-1 5746687 YP_001562163.1 CDS Daci_1133 NC_010002.1 1262219 1262998 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kpn:KPN_01887 putative ABC transporter substrate binding protein; ABC transporter-like protein 1262219..1262998 Delftia acidovorans SPH-1 5746688 YP_001562164.1 CDS Daci_1134 NC_010002.1 1263114 1263368 D PFAM: acyl-coA-binding protein ACBP; KEGG: ajs:Ajs_0455 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein 1263114..1263368 Delftia acidovorans SPH-1 5746689 YP_001562165.1 CDS Daci_1135 NC_010002.1 1263596 1264618 R PFAM: 2OG-Fe(II) oxygenase; KEGG: aav:Aave_1085 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(1263596..1264618) Delftia acidovorans SPH-1 5746690 YP_001562166.1 CDS Daci_1136 NC_010002.1 1265189 1266244 D PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_1084 Tat (twin-arginine translocation) pathway signal sequence domain protein; NMT1/THI5-like domain-containing protein 1265189..1266244 Delftia acidovorans SPH-1 5746691 YP_001562167.1 CDS Daci_1137 NC_010002.1 1266255 1266770 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aav:Aave_1083 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase 1266255..1266770 Delftia acidovorans SPH-1 5746692 YP_001562168.1 CDS Daci_1138 NC_010002.1 1266826 1267863 D PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_1093 twin-arginine translocation pathway signal; NMT1/THI5-like domain-containing protein 1266826..1267863 Delftia acidovorans SPH-1 5746693 YP_001562169.1 CDS Daci_1139 NC_010002.1 1267932 1268774 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1092 ABC transporter-related protein; ABC transporter-like protein 1267932..1268774 Delftia acidovorans SPH-1 5746694 YP_001562170.1 CDS Daci_1140 NC_010002.1 1268791 1269558 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1091 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1268791..1269558 Delftia acidovorans SPH-1 5746695 YP_001562171.1 CDS Daci_1141 NC_010002.1 1269573 1270097 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mpt:Mpe_A0774 hypothetical protein; CMP/dCMP deaminase 1269573..1270097 Delftia acidovorans SPH-1 5746696 YP_001562172.1 CDS Daci_1142 NC_010002.1 1270122 1271873 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase complement(1270122..1271873) Delftia acidovorans SPH-1 5746697 YP_001562173.1 CDS Daci_1143 NC_010002.1 1272009 1272683 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_1953 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1272009..1272683 Delftia acidovorans SPH-1 5746698 YP_001562174.1 CDS Daci_1144 NC_010002.1 1272676 1274103 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1952 integral membrane sensor signal transduction histidine kinase; histidine kinase 1272676..1274103 Delftia acidovorans SPH-1 5746699 YP_001562175.1 CDS Daci_1145 NC_010002.1 1274055 1275383 R KEGG: aav:Aave_0774 putative zinc protease protein; putative zinc protease protein complement(1274055..1275383) Delftia acidovorans SPH-1 5746700 YP_001562176.1 CDS Daci_1146 NC_010002.1 1275472 1275957 D KEGG: aav:Aave_3620 hypothetical protein; hypothetical protein 1275472..1275957 Delftia acidovorans SPH-1 5746701 YP_001562177.1 CDS Daci_1147 NC_010002.1 1275983 1277311 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_0777 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1275983..1277311 Delftia acidovorans SPH-1 5746702 YP_001562178.1 CDS Daci_1148 NC_010002.1 1277345 1277674 D PFAM: Domain of unknown function DUF1840; KEGG: aav:Aave_0778 hypothetical protein; hypothetical protein 1277345..1277674 Delftia acidovorans SPH-1 5746703 YP_001562179.1 CDS Daci_1149 NC_010002.1 1277697 1278779 R PFAM: aldo/keto reductase; KEGG: sil:SPOA0345 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(1277697..1278779) Delftia acidovorans SPH-1 5746704 YP_001562180.1 CDS Daci_1150 NC_010002.1 1278829 1279731 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: asa:ASA_1236 transcriptional regulator, LysR family; LysR family transcriptional regulator 1278829..1279731 Delftia acidovorans SPH-1 5746705 YP_001562181.1 CDS Daci_1151 NC_010002.1 1279796 1280311 D hypothetical protein 1279796..1280311 Delftia acidovorans SPH-1 5746706 YP_001562182.1 CDS Daci_1152 NC_010002.1 1280420 1281409 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_0780 uncharacterized protein UPF0065; hypothetical protein complement(1280420..1281409) Delftia acidovorans SPH-1 5746707 YP_001562183.1 CDS Daci_1153 NC_010002.1 1281651 1282898 R KEGG: ajs:Ajs_0464 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase complement(1281651..1282898) Delftia acidovorans SPH-1 5746708 YP_001562184.1 CDS Daci_1154 NC_010002.1 1282952 1283797 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_0782 ABC transporter-related protein; ABC transporter-like protein complement(1282952..1283797) Delftia acidovorans SPH-1 5746709 YP_001562185.1 CDS Daci_1155 NC_010002.1 1283959 1285275 R KEGG: aav:Aave_0783 hypothetical protein; hypothetical protein complement(1283959..1285275) Delftia acidovorans SPH-1 5746710 YP_001562186.1 CDS Daci_1156 NC_010002.1 1285355 1286419 R PFAM: inner-membrane translocator; KEGG: aav:Aave_0784 inner-membrane translocator; inner-membrane translocator complement(1285355..1286419) Delftia acidovorans SPH-1 5746711 YP_001562187.1 CDS Daci_1157 NC_010002.1 1286441 1287370 R PFAM: inner-membrane translocator; KEGG: aav:Aave_0785 inner-membrane translocator; inner-membrane translocator complement(1286441..1287370) Delftia acidovorans SPH-1 5746712 YP_001562188.1 CDS Daci_1158 NC_010002.1 1287528 1288313 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0469 ABC transporter related; ABC transporter-like protein complement(1287528..1288313) Delftia acidovorans SPH-1 5746713 YP_001562189.1 CDS Daci_1159 NC_010002.1 1288328 1290265 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(1288328..1290265) Delftia acidovorans SPH-1 5746714 YP_001562190.1 CDS Daci_1160 NC_010002.1 1290585 1291313 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: ajs:Ajs_0473 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1290585..1291313 Delftia acidovorans SPH-1 5746715 YP_001562191.1 CDS Daci_1161 NC_010002.1 1291475 1292212 D KEGG: rme:Rmet_1561 hypothetical protein; hypothetical protein 1291475..1292212 Delftia acidovorans SPH-1 5746716 YP_001562192.1 CDS Daci_1162 NC_010002.1 1292209 1293123 D PFAM: Domain of unknown function DUF1814; KEGG: rme:Rmet_1562 hypothetical protein; hypothetical protein 1292209..1293123 Delftia acidovorans SPH-1 5746717 YP_001562193.1 CDS Daci_1163 NC_010002.1 1293142 1294350 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2499 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(1293142..1294350) Delftia acidovorans SPH-1 5746718 YP_001562194.1 CDS Daci_1164 NC_010002.1 1294350 1295348 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065; hypothetical protein complement(1294350..1295348) Delftia acidovorans SPH-1 5746719 YP_001562195.1 CDS Daci_1165 NC_010002.1 1295363 1296532 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_1816 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein complement(1295363..1296532) Delftia acidovorans SPH-1 5746720 YP_001562196.1 CDS Daci_1166 NC_010002.1 1296590 1297456 D PFAM: regulatory protein IclR; KEGG: reu:Reut_B3701 regulatory protein, IclR; IclR family transcriptional regulator 1296590..1297456 Delftia acidovorans SPH-1 5746721 YP_001562197.1 CDS Daci_1167 NC_010002.1 1297474 1298013 R hypothetical protein complement(1297474..1298013) Delftia acidovorans SPH-1 5746722 YP_001562198.1 CDS Daci_1168 NC_010002.1 1298392 1300167 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bur:Bcep18194_A5332 pseudouridine synthase, Rsu; pseudouridine synthase 1298392..1300167 Delftia acidovorans SPH-1 5746723 YP_001562199.1 CDS Daci_1169 NC_010002.1 1300297 1300860 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcb:XC_0556 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1300297..1300860 Delftia acidovorans SPH-1 5746724 YP_001562200.1 CDS Daci_1170 NC_010002.1 1300860 1301930 D PFAM: FecR protein; KEGG: xcb:XC_0557 transmembrane sensor; anti-FecI sigma factor FecR 1300860..1301930 Delftia acidovorans SPH-1 5746725 YP_001562201.1 CDS Daci_1171 NC_010002.1 1302049 1304460 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 1302049..1304460 Delftia acidovorans SPH-1 5746726 YP_001562202.1 CDS Daci_1172 NC_010002.1 1304485 1305165 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pla:Plav_0377 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(1304485..1305165) Delftia acidovorans SPH-1 5746727 YP_001562203.1 CDS Daci_1173 NC_010002.1 1305298 1307523 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1305298..1307523) Delftia acidovorans SPH-1 5746728 YP_001562204.1 CDS Daci_1174 NC_010002.1 1307739 1308443 R TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sme:SMc01870 probable aquaporin Z (bacterial nodulin-like intrinsic) transmembrane protein; MIP family channel protein complement(1307739..1308443) Delftia acidovorans SPH-1 5746729 YP_001562205.1 CDS Daci_1175 NC_010002.1 1308687 1310639 D molecular chaperone; heat shock protein 90 1308687..1310639 Delftia acidovorans SPH-1 5746730 YP_001562206.1 CDS Daci_1176 NC_010002.1 1311005 1314613 D TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: aav:Aave_4277 conserved repeat domain; hypothetical protein 1311005..1314613 Delftia acidovorans SPH-1 5746731 YP_001562207.1 CDS Daci_1177 NC_010002.1 1314688 1315314 D KEGG: aav:Aave_4282 hypothetical protein; hypothetical protein 1314688..1315314 Delftia acidovorans SPH-1 5746732 YP_001562208.1 CDS Daci_1178 NC_010002.1 1315325 1316080 D KEGG: aav:Aave_4281 hypothetical protein; hypothetical protein 1315325..1316080 Delftia acidovorans SPH-1 5746733 YP_001562209.1 CDS Daci_1179 NC_010002.1 1316100 1316741 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: pnu:Pnuc_1190 urease accessory protein UreG; urease accessory protein UreG complement(1316100..1316741) Delftia acidovorans SPH-1 5746734 YP_001562210.1 CDS Daci_1180 NC_010002.1 1316762 1317478 R PFAM: Urease accessory protein UreF; KEGG: reu:Reut_A0997 urease accessory protein UreF; urease accessory protein UreF complement(1316762..1317478) Delftia acidovorans SPH-1 5746735 YP_001562211.1 CDS Daci_1181 NC_010002.1 1317471 1318121 R PFAM: UreE urease accessory domain protein; KEGG: bte:BTH_I1495 urease accessory protein UreE; UreE urease accessory domain-containing protein complement(1317471..1318121) Delftia acidovorans SPH-1 5746736 YP_001562212.1 CDS ureC NC_010002.1 1318129 1319832 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(1318129..1319832) Delftia acidovorans SPH-1 5746737 YP_001562213.1 CDS Daci_1183 NC_010002.1 1319998 1320315 R KEGG: bxe:Bxe_A3693 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; urease subunit beta complement(1319998..1320315) Delftia acidovorans SPH-1 5746738 YP_001562214.1 CDS Daci_1184 NC_010002.1 1320331 1320942 R PFAM: HupE/UreJ protein; KEGG: pna:Pnap_0976 HupE/UreJ protein; HupE/UreJ protein complement(1320331..1320942) Delftia acidovorans SPH-1 5746739 YP_001562215.1 CDS Daci_1185 NC_010002.1 1320954 1321256 R KEGG: reh:H16_A1081 UreA amidohydrolase (urease) gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; urease subunit gamma complement(1320954..1321256) Delftia acidovorans SPH-1 5746740 YP_001562216.1 CDS Daci_1186 NC_010002.1 1321274 1322191 R PFAM: Urease accessory protein UreD; KEGG: reh:H16_A1080 UreA amidohydrolase (urease) accessory protein UreD; urease accessory protein UreD complement(1321274..1322191) Delftia acidovorans SPH-1 5746741 YP_001562217.1 CDS Daci_1187 NC_010002.1 1322391 1323656 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2274 major facilitator superfamily MFS_1; major facilitator transporter complement(1322391..1323656) Delftia acidovorans SPH-1 5746742 YP_001562218.1 CDS Daci_1188 NC_010002.1 1323703 1324230 R PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_B2318 ribonuclease; endoribonuclease L-PSP complement(1323703..1324230) Delftia acidovorans SPH-1 5746743 YP_001562219.1 CDS Daci_1189 NC_010002.1 1324360 1324830 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: reh:H16_B2319 transcriptional regulator, SoxR-family; MerR family transcriptional regulator 1324360..1324830 Delftia acidovorans SPH-1 5746744 YP_001562220.1 CDS Daci_1190 NC_010002.1 1324854 1326023 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2346 major facilitator superfamily MFS_1; major facilitator transporter complement(1324854..1326023) Delftia acidovorans SPH-1 5746745 YP_001562221.1 CDS Daci_1191 NC_010002.1 1326344 1326823 D KEGG: ajs:Ajs_2291 hypothetical protein; hypothetical protein 1326344..1326823 Delftia acidovorans SPH-1 5746746 YP_001562222.1 CDS Daci_1192 NC_010002.1 1326875 1327825 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase complement(1326875..1327825) Delftia acidovorans SPH-1 5746747 YP_001562223.1 CDS Daci_1193 NC_010002.1 1327942 1329006 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(1327942..1329006) Delftia acidovorans SPH-1 5746748 YP_001562224.1 CDS Daci_1194 NC_010002.1 1329071 1329808 D KEGG: azo:azo0068 hypothetical protein; hypothetical protein 1329071..1329808 Delftia acidovorans SPH-1 5746749 YP_001562225.1 CDS Daci_1195 NC_010002.1 1329809 1330225 R PFAM: OsmC family protein; KEGG: aav:Aave_4272 OsmC family protein; OsmC family protein complement(1329809..1330225) Delftia acidovorans SPH-1 5746750 YP_001562226.1 CDS Daci_1196 NC_010002.1 1330290 1330757 R PFAM: regulatory protein MarR; KEGG: ajs:Ajs_0483 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1330290..1330757) Delftia acidovorans SPH-1 5746751 YP_001562227.1 CDS Daci_1197 NC_010002.1 1330851 1331666 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2841 probable enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1330851..1331666) Delftia acidovorans SPH-1 5746752 YP_001562228.1 CDS Daci_1198 NC_010002.1 1331765 1332613 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(1331765..1332613) Delftia acidovorans SPH-1 5746753 YP_001562229.1 CDS Daci_1199 NC_010002.1 1332770 1334362 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: ajs:Ajs_3717 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 1332770..1334362 Delftia acidovorans SPH-1 5746754 YP_001562230.1 CDS Daci_1200 NC_010002.1 1334359 1335627 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_4247 diguanylate cyclase; diguanylate cyclase complement(1334359..1335627) Delftia acidovorans SPH-1 5746755 YP_001562231.1 CDS Daci_1201 NC_010002.1 1335690 1337186 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(1335690..1337186) Delftia acidovorans SPH-1 5746756 YP_001562232.1 CDS Daci_1202 NC_010002.1 1337190 1339268 R KEGG: ajs:Ajs_3708 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1337190..1339268) Delftia acidovorans SPH-1 5746757 YP_001562233.1 CDS Daci_1203 NC_010002.1 1339441 1340031 R PFAM: protein of unknown function DUF336; KEGG: pol:Bpro_4102 protein of unknown function DUF336; hypothetical protein complement(1339441..1340031) Delftia acidovorans SPH-1 5746758 YP_001562234.1 CDS Daci_1204 NC_010002.1 1340105 1340746 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pol:Bpro_4101 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1340105..1340746) Delftia acidovorans SPH-1 5746759 YP_001562235.1 CDS Daci_1205 NC_010002.1 1340743 1342389 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4100 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(1340743..1342389) Delftia acidovorans SPH-1 5746760 YP_001562236.1 CDS Daci_1206 NC_010002.1 1342430 1343380 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1342430..1343380 Delftia acidovorans SPH-1 5746761 YP_001562237.1 CDS Daci_1207 NC_010002.1 1343377 1343847 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1343377..1343847 Delftia acidovorans SPH-1 5746762 YP_001562238.1 CDS Daci_1208 NC_010002.1 1343970 1345745 D KEGG: rme:Rmet_4890 peptidase M20A, peptidase V; TIGRFAM: dipeptidase,; PFAM: peptidase M20; peptidase dimerisation domain protein; hypothetical protein 1343970..1345745 Delftia acidovorans SPH-1 5746763 YP_001562239.1 CDS Daci_1209 NC_010002.1 1345861 1346874 D TIGRFAM: CRISPR-associated protein Cas1; KEGG: ajs:Ajs_0489 CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 1345861..1346874 Delftia acidovorans SPH-1 5746764 YP_001562240.1 CDS Daci_1211 NC_010002.1 1350361 1350672 R TIGRFAM: addiction module antidote protein, HigA family; KEGG: dno:DNO_0272 virulence-associated protein VapI; XRE family plasmid maintenance system antidote protein complement(1350361..1350672) Delftia acidovorans SPH-1 5746766 YP_001562241.1 CDS Daci_1212 NC_010002.1 1350751 1351032 R PFAM: plasmid maintenance system killer; KEGG: ppf:Pput_4191 plasmid maintenance system killer; plasmid maintenance system killer protein complement(1350751..1351032) Delftia acidovorans SPH-1 5746767 YP_001562242.1 CDS Daci_1213 NC_010002.1 1351203 1352600 D TIGRFAM: CRISPR-associated protein, Csy1 family; PFAM: CRISPR-associated protein Csy1; KEGG: vei:Veis_1458 CRISPR-associated protein, Csy1 family; CRISPR-associated Csy1 family protein 1351203..1352600 Delftia acidovorans SPH-1 5746768 YP_001562243.1 CDS Daci_1214 NC_010002.1 1352597 1353685 D TIGRFAM: CRISPR-associated protein, Csy2 family; PFAM: CRISPR-associated protein Csy2; KEGG: ajs:Ajs_0486 CRISPR-associated protein, Csy2 family; CRISPR-associated Csy2 family protein 1352597..1353685 Delftia acidovorans SPH-1 5746769 YP_001562244.1 CDS Daci_1215 NC_010002.1 1353740 1354768 D TIGRFAM: CRISPR-associated protein, Csy3 family; PFAM: CRISPR-associated protein Csy3; KEGG: vei:Veis_1456 CRISPR-associated protein, Csy3 family; CRISPR-associated Csy3 family protein 1353740..1354768 Delftia acidovorans SPH-1 5746770 YP_001562245.1 CDS Daci_1216 NC_010002.1 1354768 1355340 D TIGRFAM: CRISPR-associated protein, Csy4 family; PFAM: CRISPR-associated protein Csy4; KEGG: ajs:Ajs_0484 CRISPR-associated protein, Csy4 family; CRISPR-associated Csy4 family protein 1354768..1355340 Delftia acidovorans SPH-1 5746771 YP_001562246.1 CDS Daci_1217 NC_010002.1 1359174 1359560 R hypothetical protein complement(1359174..1359560) Delftia acidovorans SPH-1 5746772 YP_001562247.1 CDS Daci_1218 NC_010002.1 1359996 1360241 D hypothetical protein 1359996..1360241 Delftia acidovorans SPH-1 5746773 YP_001562248.1 CDS Daci_1219 NC_010002.1 1360454 1361212 R PFAM: protein of unknown function DUF81; KEGG: ajs:Ajs_3704 protein of unknown function DUF81; hypothetical protein complement(1360454..1361212) Delftia acidovorans SPH-1 5746774 YP_001562249.1 CDS Daci_1220 NC_010002.1 1361403 1362392 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_0434 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1361403..1362392) Delftia acidovorans SPH-1 5746775 YP_001562250.1 CDS Daci_1221 NC_010002.1 1362466 1363413 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_0435 uncharacterized protein UPF0065; hypothetical protein 1362466..1363413 Delftia acidovorans SPH-1 5746776 YP_001562251.1 CDS Daci_1222 NC_010002.1 1363436 1364692 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_0218 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1363436..1364692 Delftia acidovorans SPH-1 5746777 YP_001562252.1 CDS Daci_1223 NC_010002.1 1364734 1365720 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1210 alcohol dehydrogenase GroES domain protein; quinone oxidoreductase 1364734..1365720 Delftia acidovorans SPH-1 5746778 YP_001562253.1 CDS Daci_1224 NC_010002.1 1365735 1366193 R PFAM: protein of unknown function UPF0054; KEGG: ajs:Ajs_3702 protein of unknown function UPF0054; hypothetical protein complement(1365735..1366193) Delftia acidovorans SPH-1 5746779 YP_001562254.1 CDS Daci_1225 NC_010002.1 1366258 1367229 R PFAM: PhoH family protein; KEGG: aav:Aave_4241 PhoH family protein; PhoH family protein complement(1366258..1367229) Delftia acidovorans SPH-1 5746780 YP_001562255.1 CDS Daci_1226 NC_010002.1 1367355 1367927 D KEGG: ajs:Ajs_3700 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 1367355..1367927 Delftia acidovorans SPH-1 5746781 YP_001562256.1 CDS ruvB NC_010002.1 1367935 1369020 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1367935..1369020 Delftia acidovorans SPH-1 5746782 YP_001562257.1 CDS Daci_1228 NC_010002.1 1369028 1369744 R PFAM: MgtC/SapB transporter; KEGG: aav:Aave_0651 MgtC/SapB transporter; MgtC/SapB transporter complement(1369028..1369744) Delftia acidovorans SPH-1 5746783 YP_001562258.1 CDS Daci_1229 NC_010002.1 1369785 1372544 R P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA complement(1369785..1372544) Delftia acidovorans SPH-1 5746784 YP_001562259.1 CDS Daci_1230 NC_010002.1 1372563 1372775 R hypothetical protein complement(1372563..1372775) Delftia acidovorans SPH-1 5746785 YP_001562260.1 CDS Daci_1231 NC_010002.1 1373186 1373422 R hypothetical protein complement(1373186..1373422) Delftia acidovorans SPH-1 5746786 YP_001562261.1 CDS Daci_1232 NC_010002.1 1373674 1375554 R PFAM: fatty acid hydroxylase; YhhN family protein; KEGG: ajs:Ajs_3693 YhhN family protein; hypothetical protein complement(1373674..1375554) Delftia acidovorans SPH-1 5746787 YP_001562262.1 CDS Daci_1233 NC_010002.1 1375659 1376798 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2519 uncharacterized protein UPF0065; hypothetical protein 1375659..1376798 Delftia acidovorans SPH-1 5746788 YP_001562263.1 CDS Daci_1234 NC_010002.1 1376974 1378140 D KEGG: rme:Rmet_5702 hypothetical protein; hypothetical protein 1376974..1378140 Delftia acidovorans SPH-1 5746789 YP_001562264.1 CDS Daci_1235 NC_010002.1 1378131 1379270 D KEGG: rme:Rmet_5701 hypothetical protein; hypothetical protein 1378131..1379270 Delftia acidovorans SPH-1 5746790 YP_001562265.1 CDS Daci_1236 NC_010002.1 1379418 1380080 D KEGG: rme:Rmet_5700 hypothetical protein; hypothetical protein 1379418..1380080 Delftia acidovorans SPH-1 5746791 YP_001562266.1 CDS Daci_1237 NC_010002.1 1380107 1381561 D KEGG: rme:Rmet_5699 hypothetical protein; hypothetical protein 1380107..1381561 Delftia acidovorans SPH-1 5746792 YP_001562267.1 CDS Daci_1238 NC_010002.1 1381612 1382253 R PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_0491 phosphoglycerate mutase; phosphoglycerate mutase complement(1381612..1382253) Delftia acidovorans SPH-1 5746793 YP_001562268.1 CDS Daci_1239 NC_010002.1 1382400 1382885 R KEGG: ajs:Ajs_0492 hypothetical protein; hypothetical protein complement(1382400..1382885) Delftia acidovorans SPH-1 5746794 YP_001562269.1 CDS Daci_1240 NC_010002.1 1383241 1384833 D PFAM: extracellular solute-binding protein family 5; KEGG: sit:TM1040_3144 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1383241..1384833 Delftia acidovorans SPH-1 5746795 YP_001562270.1 CDS Daci_1241 NC_010002.1 1384840 1385805 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3142 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1384840..1385805 Delftia acidovorans SPH-1 5746796 YP_001562271.1 CDS Daci_1242 NC_010002.1 1385802 1386740 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2223 peptide ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 1385802..1386740 Delftia acidovorans SPH-1 5746797 YP_001562272.1 CDS Daci_1243 NC_010002.1 1386737 1388464 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bbr:BB4911 probable ABC transporter, ATP-binding protein; ABC transporter-like protein 1386737..1388464 Delftia acidovorans SPH-1 5746798 YP_001562273.1 CDS Daci_1244 NC_010002.1 1388492 1388815 R KEGG: pna:Pnap_0085 putative transcriptional regulator; putative transcriptional regulator complement(1388492..1388815) Delftia acidovorans SPH-1 5746799 YP_001562274.1 CDS Daci_1245 NC_010002.1 1388812 1389171 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pna:Pnap_0084 protein of unknown function DUF891; addiction module killer protein complement(1388812..1389171) Delftia acidovorans SPH-1 5746800 YP_001562275.1 CDS Daci_1246 NC_010002.1 1389318 1390013 R KEGG: aav:Aave_4232 hypothetical protein; hypothetical protein complement(1389318..1390013) Delftia acidovorans SPH-1 5746801 YP_001562276.1 CDS Daci_1247 NC_010002.1 1390091 1391032 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(1390091..1391032) Delftia acidovorans SPH-1 5746802 YP_001562277.1 CDS Daci_1248 NC_010002.1 1391045 1391890 R PFAM: fatty acid hydroxylase; KEGG: ana:all2658 hypothetical protein; fatty acid hydroxylase complement(1391045..1391890) Delftia acidovorans SPH-1 5746803 YP_001562278.1 CDS Daci_1249 NC_010002.1 1392031 1392402 R PFAM: dihydroneopterin aldolase; KEGG: ajs:Ajs_0495 dihydroneopterin aldolase; dihydroneopterin aldolase complement(1392031..1392402) Delftia acidovorans SPH-1 5746804 YP_001562279.1 CDS Daci_1250 NC_010002.1 1392445 1393230 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0496 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1392445..1393230) Delftia acidovorans SPH-1 5746805 YP_001562280.1 CDS Daci_1251 NC_010002.1 1393347 1394360 D PFAM: protein of unknown function DUF185; KEGG: ajs:Ajs_0497 protein of unknown function DUF185; hypothetical protein 1393347..1394360 Delftia acidovorans SPH-1 5746806 YP_001562281.1 CDS Daci_1252 NC_010002.1 1394387 1395400 R KEGG: azo:azo3831 conserved hypothetical secreted protein; hypothetical protein complement(1394387..1395400) Delftia acidovorans SPH-1 5746807 YP_001562282.1 CDS Daci_1253 NC_010002.1 1395429 1395623 D KEGG: ajs:Ajs_0499 hypothetical protein; hypothetical protein 1395429..1395623 Delftia acidovorans SPH-1 5746808 YP_001562283.1 CDS Daci_1254 NC_010002.1 1395698 1396132 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ajs:Ajs_0504 thioredoxin; thioredoxin 1395698..1396132 Delftia acidovorans SPH-1 5746809 YP_001562284.1 CDS Daci_1255 NC_010002.1 1396176 1396859 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mms:mma_2821 two-components system response regulator; two component transcriptional regulator complement(1396176..1396859) Delftia acidovorans SPH-1 5746810 YP_001562285.1 CDS Daci_1256 NC_010002.1 1396928 1398886 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; KEGG: bur:Bcep18194_B1562 periplasmic sensor signal transduction histidine kinase; histidine kinase 1396928..1398886 Delftia acidovorans SPH-1 5746811 YP_001562286.1 CDS Daci_1257 NC_010002.1 1398912 1400165 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_0505 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1398912..1400165) Delftia acidovorans SPH-1 5746812 YP_001562287.1 CDS Daci_1258 NC_010002.1 1400260 1401801 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: eca:ECA1988 putative peptidase; peptidase dimerisation domain-containing protein 1400260..1401801 Delftia acidovorans SPH-1 5746813 YP_001562288.1 CDS Daci_1259 NC_010002.1 1401834 1402523 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0507 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(1401834..1402523) Delftia acidovorans SPH-1 5746814 YP_001562289.1 CDS Daci_1260 NC_010002.1 1402612 1403370 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pna:Pnap_0636 ExsB protein; exsB protein 1402612..1403370 Delftia acidovorans SPH-1 5746815 YP_001562290.1 CDS Daci_1261 NC_010002.1 1403512 1404084 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: vei:Veis_1472 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(1403512..1404084) Delftia acidovorans SPH-1 5746816 YP_001562291.1 CDS Daci_1262 NC_010002.1 1404100 1406079 D PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_4203 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1404100..1406079 Delftia acidovorans SPH-1 5746817 YP_001562292.1 CDS Daci_1263 NC_010002.1 1406187 1406750 D KEGG: hch:HCH_06720 hypothetical protein; hypothetical protein 1406187..1406750 Delftia acidovorans SPH-1 5746818 YP_001562293.1 CDS Daci_1264 NC_010002.1 1406899 1407858 R PFAM: beta-lactamase domain protein; KEGG: aav:Aave_4202 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(1406899..1407858) Delftia acidovorans SPH-1 5746819 YP_001562294.1 CDS Daci_1265 NC_010002.1 1407945 1409645 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(1407945..1409645) Delftia acidovorans SPH-1 5746820 YP_001562295.1 CDS Daci_1266 NC_010002.1 1409816 1410814 D KEGG: ajs:Ajs_0517 PGAP1 family protein; PGAP1 family protein 1409816..1410814 Delftia acidovorans SPH-1 5746821 YP_001562296.1 CDS phhA NC_010002.1 1410763 1411653 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(1410763..1411653) Delftia acidovorans SPH-1 5746822 YP_001562297.1 CDS Daci_1268 NC_010002.1 1411718 1412800 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0519 uncharacterized protein UPF0065; hypothetical protein complement(1411718..1412800) Delftia acidovorans SPH-1 5746823 YP_001562298.1 CDS Daci_1269 NC_010002.1 1413176 1413658 D PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_4188 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1413176..1413658 Delftia acidovorans SPH-1 5746824 YP_001562299.1 CDS Daci_1270 NC_010002.1 1413850 1414521 D PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1413850..1414521 Delftia acidovorans SPH-1 5746825 YP_001562300.1 CDS Daci_1271 NC_010002.1 1414585 1415508 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: pol:Bpro_4209 CBS domain; hypothetical protein 1414585..1415508 Delftia acidovorans SPH-1 5746826 YP_001562301.1 CDS Daci_1272 NC_010002.1 1415583 1417235 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1415583..1417235 Delftia acidovorans SPH-1 5746827 YP_001562302.1 CDS Daci_1273 NC_010002.1 1417414 1417938 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1417414..1417938 Delftia acidovorans SPH-1 5746828 YP_001562303.1 CDS Daci_1274 NC_010002.1 1417935 1419158 D PFAM: Beta-ketoacyl synthase; KEGG: ajs:Ajs_0526 beta-ketoacyl synthase; beta-ketoacyl synthase 1417935..1419158 Delftia acidovorans SPH-1 5746829 YP_001562304.1 CDS Daci_1275 NC_010002.1 1419323 1420393 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1419323..1420393 Delftia acidovorans SPH-1 5746830 YP_001562305.1 CDS Daci_1276 NC_010002.1 1420390 1421292 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1420390..1421292 Delftia acidovorans SPH-1 5746831 YP_001562306.1 CDS Daci_1277 NC_010002.1 1421334 1422224 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1421334..1422224 Delftia acidovorans SPH-1 5746832 YP_001562307.1 CDS Daci_1278 NC_010002.1 1422221 1422769 D KEGG: ajs:Ajs_0540 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1422221..1422769 Delftia acidovorans SPH-1 5746833 YP_001562308.1 CDS Daci_1279 NC_010002.1 1422776 1423657 R TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5518 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1422776..1423657) Delftia acidovorans SPH-1 5746834 YP_001562309.1 CDS Daci_1280 NC_010002.1 1423871 1425322 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pol:Bpro_3578 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1423871..1425322 Delftia acidovorans SPH-1 5746835 YP_001562310.1 CDS Daci_1281 NC_010002.1 1425333 1426082 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_1419 transcriptional regulator, GntR family; GntR family transcriptional regulator 1425333..1426082 Delftia acidovorans SPH-1 5746836 YP_001562311.1 CDS Daci_1282 NC_010002.1 1426281 1427324 D TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: reh:H16_B0111 ABC-type transporter, periplasmic component: BIT family; 2-aminoethylphosphonate ABC transporter substrate-binding protein 1426281..1427324 Delftia acidovorans SPH-1 5746837 YP_001562312.1 CDS Daci_1283 NC_010002.1 1427339 1428412 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smd:Smed_4878 ABC transporter related; ABC transporter-like protein 1427339..1428412 Delftia acidovorans SPH-1 5746838 YP_001562313.1 CDS Daci_1284 NC_010002.1 1428409 1430187 D TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_03086 ABC-type Fe3+ transport system, permease component; 2-aminoethylphosphonate ABC transporter permease 1428409..1430187 Delftia acidovorans SPH-1 5746839 YP_001562314.1 CDS Daci_1285 NC_010002.1 1430220 1431335 D TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6735 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1430220..1431335 Delftia acidovorans SPH-1 5746840 YP_001562315.1 CDS Daci_1286 NC_010002.1 1431351 1432523 R KEGG: aba:Acid345_4150 hypothetical protein; hypothetical protein complement(1431351..1432523) Delftia acidovorans SPH-1 5746841 YP_001562316.1 CDS Daci_1287 NC_010002.1 1432603 1433718 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: tfu:Tfu_2818 hypothetical protein; DNA-binding domain-containing protein complement(1432603..1433718) Delftia acidovorans SPH-1 5746842 YP_001562317.1 CDS glyQ NC_010002.1 1434077 1435015 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1434077..1435015 Delftia acidovorans SPH-1 5746843 YP_001562318.1 CDS Daci_1289 NC_010002.1 1435050 1437164 D KEGG: aav:Aave_4177 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1435050..1437164 Delftia acidovorans SPH-1 5746844 YP_001562319.1 CDS Daci_1290 NC_010002.1 1437220 1437789 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: vei:Veis_2164 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein 1437220..1437789 Delftia acidovorans SPH-1 5746845 YP_001562320.1 CDS Daci_1291 NC_010002.1 1437940 1438680 D PFAM: phospholipid/glycerol acyltransferase; KEGG: aav:Aave_4174 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1437940..1438680 Delftia acidovorans SPH-1 5746846 YP_001562321.1 CDS Daci_1292 NC_010002.1 1438697 1439623 D PFAM: protein of unknown function DUF45; KEGG: aav:Aave_4173 protein of unknown function DUF45; hypothetical protein 1438697..1439623 Delftia acidovorans SPH-1 5746847 YP_001562322.1 CDS Daci_1293 NC_010002.1 1439714 1440154 D SMART: Rhodanese domain protein; KEGG: vei:Veis_2167 rhodanese domain protein; rhodanese domain-containing protein 1439714..1440154 Delftia acidovorans SPH-1 5746848 YP_001562323.1 CDS Daci_1294 NC_010002.1 1440177 1441112 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A2109 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1440177..1441112) Delftia acidovorans SPH-1 5746849 YP_001562324.1 CDS Daci_1295 NC_010002.1 1441218 1442192 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2118 uncharacterized protein UPF0065; hypothetical protein 1441218..1442192 Delftia acidovorans SPH-1 5746850 YP_001562325.1 CDS Daci_1296 NC_010002.1 1442194 1442952 D PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4205 Asp/Glu racemase; Asp/Glu/hydantoin racemase 1442194..1442952 Delftia acidovorans SPH-1 5746851 YP_001562326.1 CDS Daci_1297 NC_010002.1 1443122 1443592 R PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; transport-associated protein complement(1443122..1443592) Delftia acidovorans SPH-1 5746852 YP_001562327.1 CDS Daci_1298 NC_010002.1 1443736 1444590 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1443736..1444590 Delftia acidovorans SPH-1 5746853 YP_001562328.1 CDS Daci_1299 NC_010002.1 1444741 1446468 D KEGG: aav:Aave_4160 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; general secretory pathway protein E 1444741..1446468 Delftia acidovorans SPH-1 5746854 YP_001562329.1 CDS Daci_1300 NC_010002.1 1446461 1447678 D PFAM: type II secretion system protein; KEGG: aav:Aave_4159 type II secretion system protein; type II secretion system protein 1446461..1447678 Delftia acidovorans SPH-1 5746855 YP_001562330.1 CDS Daci_1301 NC_010002.1 1447711 1448151 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_4158 general secretion pathway protein G; general secretion pathway protein G 1447711..1448151 Delftia acidovorans SPH-1 5746856 YP_001562331.1 CDS Daci_1302 NC_010002.1 1448210 1448656 D TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_0685 general secretion pathway protein H; general secretion pathway protein H 1448210..1448656 Delftia acidovorans SPH-1 5746857 YP_001562332.1 CDS Daci_1303 NC_010002.1 1448656 1449060 D KEGG: vei:Veis_0684 general secretion pathway protein I; general secretion pathway protein I 1448656..1449060 Delftia acidovorans SPH-1 5746858 YP_001562333.1 CDS Daci_1304 NC_010002.1 1449057 1449737 D KEGG: aav:Aave_4155 general secretion pathway protein J; general secretion pathway protein J 1449057..1449737 Delftia acidovorans SPH-1 5746859 YP_001562334.1 CDS Daci_1305 NC_010002.1 1449734 1450522 D KEGG: vei:Veis_0682 general secretory pathway protein K; general secretory pathway protein K 1449734..1450522 Delftia acidovorans SPH-1 5746860 YP_001562335.1 CDS Daci_1306 NC_010002.1 1450685 1451740 D PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein; fimbrial assembly family protein 1450685..1451740 Delftia acidovorans SPH-1 5746861 YP_001562336.1 CDS Daci_1307 NC_010002.1 1451737 1452312 D KEGG: aav:Aave_4152 general secretion pathway protein M; general secretion pathway protein M 1451737..1452312 Delftia acidovorans SPH-1 5746862 YP_001562337.1 CDS Daci_1308 NC_010002.1 1452309 1452977 D KEGG: aav:Aave_4151 hypothetical protein; hypothetical protein 1452309..1452977 Delftia acidovorans SPH-1 5746863 YP_001562338.1 CDS Daci_1309 NC_010002.1 1452998 1455457 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_4150 general secretion pathway protein D; general secretion pathway protein D 1452998..1455457 Delftia acidovorans SPH-1 5746864 YP_001562339.1 CDS Daci_1310 NC_010002.1 1455499 1455921 D KEGG: vei:Veis_0677 hypothetical protein; hypothetical protein 1455499..1455921 Delftia acidovorans SPH-1 5746865 YP_001562340.1 CDS Daci_1311 NC_010002.1 1456445 1458064 D KEGG: aav:Aave_4148 hypothetical protein; hypothetical protein 1456445..1458064 Delftia acidovorans SPH-1 5746866 YP_001562341.1 CDS Daci_1312 NC_010002.1 1458145 1459080 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: aav:Aave_4147 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1458145..1459080 Delftia acidovorans SPH-1 5746867 YP_001562342.1 CDS Daci_1313 NC_010002.1 1459226 1460026 D PFAM: ABC-2 type transporter; KEGG: aav:Aave_4146 ABC-2 type transporter; ABC-2 type transporter 1459226..1460026 Delftia acidovorans SPH-1 5746868 YP_001562343.1 CDS Daci_1314 NC_010002.1 1460023 1461297 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4145 ABC transporter-related protein; ABC transporter-like protein 1460023..1461297 Delftia acidovorans SPH-1 5746869 YP_001562344.1 CDS Daci_1315 NC_010002.1 1461294 1462187 D KEGG: aav:Aave_4144 hypothetical protein; hypothetical protein 1461294..1462187 Delftia acidovorans SPH-1 5746870 YP_001562345.1 CDS Daci_1316 NC_010002.1 1462208 1463089 D PFAM: Methyltransferase type 12; KEGG: aav:Aave_4143 methyltransferase type 12; type 12 methyltransferase 1462208..1463089 Delftia acidovorans SPH-1 5746871 YP_001562346.1 CDS Daci_1317 NC_010002.1 1463134 1465815 R KEGG: efa:EF2179 hypothetical protein; hypothetical protein complement(1463134..1465815) Delftia acidovorans SPH-1 5746872 YP_001562347.1 CDS Daci_1318 NC_010002.1 1465840 1469784 R PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2; glycosyl transferase family protein complement(1465840..1469784) Delftia acidovorans SPH-1 5746873 YP_001562348.1 CDS Daci_1319 NC_010002.1 1469940 1470713 D KEGG: vei:Veis_1228 glycosyl transferase, family 2; glycosyl transferase family protein 1469940..1470713 Delftia acidovorans SPH-1 5746874 YP_001562349.1 CDS Daci_1320 NC_010002.1 1470719 1471822 D PFAM: glycosyl transferase family 4; KEGG: vei:Veis_1227 glycosyl transferase, family 4; glycosyl transferase family protein 1470719..1471822 Delftia acidovorans SPH-1 5746875 YP_001562350.1 CDS Daci_1321 NC_010002.1 1471932 1472822 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1471932..1472822 Delftia acidovorans SPH-1 5746876 YP_001562351.1 CDS Daci_1322 NC_010002.1 1472944 1473663 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4138 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1472944..1473663 Delftia acidovorans SPH-1 5746877 YP_001562352.1 CDS Daci_1323 NC_010002.1 1473701 1475188 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4137 integral membrane sensor signal transduction histidine kinase; histidine kinase 1473701..1475188 Delftia acidovorans SPH-1 5746878 YP_001562353.1 CDS slmA NC_010002.1 1475271 1475966 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 1475271..1475966 Delftia acidovorans SPH-1 5746879 YP_001562354.1 CDS Daci_1325 NC_010002.1 1476070 1476582 R KEGG: aav:Aave_4135 hypothetical protein; hypothetical protein complement(1476070..1476582) Delftia acidovorans SPH-1 5746880 YP_001562355.1 CDS Daci_1326 NC_010002.1 1476729 1477343 D PFAM: peptidase S24 and S26 domain protein; KEGG: ppd:Ppro_0272 putative phage repressor; putative phage repressor 1476729..1477343 Delftia acidovorans SPH-1 5746881 YP_001562356.1 CDS Daci_1327 NC_010002.1 1477592 1478269 D KEGG: aav:Aave_4101 hypothetical protein; hypothetical protein 1477592..1478269 Delftia acidovorans SPH-1 5746882 YP_001562357.1 CDS Daci_1328 NC_010002.1 1478399 1479325 D KEGG: rsq:Rsph17025_2092 hypothetical protein; hypothetical protein 1478399..1479325 Delftia acidovorans SPH-1 5746883 YP_001562358.1 CDS Daci_1329 NC_010002.1 1479369 1479824 D hypothetical protein 1479369..1479824 Delftia acidovorans SPH-1 5746884 YP_001562359.1 CDS Daci_1330 NC_010002.1 1479854 1480144 D PFAM: Protein of unknown function DUF1799 phage-related; KEGG: pap:PSPA7_2416 phage protein; hypothetical protein 1479854..1480144 Delftia acidovorans SPH-1 5746885 YP_001562360.1 CDS Daci_1331 NC_010002.1 1480215 1485182 D KEGG: aav:Aave_1628 prophage tail length tape measure; hypothetical protein 1480215..1485182 Delftia acidovorans SPH-1 5746886 YP_001562361.1 CDS Daci_1332 NC_010002.1 1485179 1486114 D KEGG: aav:Aave_1629 carbohydrate-binding family V/XII; hypothetical protein 1485179..1486114 Delftia acidovorans SPH-1 5746887 YP_001562362.1 CDS Daci_1333 NC_010002.1 1486092 1486793 D KEGG: sit:TM1040_1609 hypothetical protein; hypothetical protein 1486092..1486793 Delftia acidovorans SPH-1 5746888 YP_001562363.1 CDS Daci_1334 NC_010002.1 1486784 1487896 D hypothetical protein 1486784..1487896 Delftia acidovorans SPH-1 5746889 YP_001562364.1 CDS Daci_1335 NC_010002.1 1487893 1488435 D hypothetical protein 1487893..1488435 Delftia acidovorans SPH-1 5746890 YP_001562365.1 CDS Daci_1336 NC_010002.1 1488585 1489292 D PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0591 transcriptional regulator, TetR family; TetR family transcriptional regulator 1488585..1489292 Delftia acidovorans SPH-1 5746891 YP_001562366.1 CDS Daci_1337 NC_010002.1 1489356 1491161 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_4089 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1489356..1491161 Delftia acidovorans SPH-1 5746892 YP_001562367.1 CDS Daci_1338 NC_010002.1 1491242 1491682 D KEGG: ajs:Ajs_0593 hypothetical protein; hypothetical protein 1491242..1491682 Delftia acidovorans SPH-1 5746893 YP_001562368.1 CDS Daci_1339 NC_010002.1 1491736 1494138 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 1491736..1494138 Delftia acidovorans SPH-1 5746894 YP_001562369.1 CDS Daci_1340 NC_010002.1 1494162 1495358 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1494162..1495358 Delftia acidovorans SPH-1 5746895 YP_001562370.1 CDS Daci_1341 NC_010002.1 1495463 1496365 D KEGG: ajs:Ajs_0596 putative hydrolase; putative hydrolase 1495463..1496365 Delftia acidovorans SPH-1 5746896 YP_001562371.1 CDS Daci_1342 NC_010002.1 1496403 1497233 D KEGG: vei:Veis_1900 hypothetical protein; hypothetical protein 1496403..1497233 Delftia acidovorans SPH-1 5746897 YP_001562372.1 CDS Daci_1343 NC_010002.1 1497250 1498044 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1497250..1498044 Delftia acidovorans SPH-1 5746898 YP_001562373.1 CDS Daci_1344 NC_010002.1 1498038 1498538 D PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0599 uncharacterized domain 1; hypothetical protein 1498038..1498538 Delftia acidovorans SPH-1 5746899 YP_001562374.1 CDS Daci_1345 NC_010002.1 1498579 1499958 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpb:RPB_1675 MATE efflux family protein; multi anti extrusion protein MatE complement(1498579..1499958) Delftia acidovorans SPH-1 5746900 YP_001562375.1 CDS Daci_1346 NC_010002.1 1499955 1500422 R PFAM: regulatory protein MarR; KEGG: mca:MCA2812 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1499955..1500422) Delftia acidovorans SPH-1 5746901 YP_001562376.1 CDS Daci_1347 NC_010002.1 1500641 1501306 D PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0600 protein of unknown function DUF583; hypothetical protein 1500641..1501306 Delftia acidovorans SPH-1 5746902 YP_001562377.1 CDS Daci_1348 NC_010002.1 1501382 1501858 R PFAM: thioesterase superfamily protein; KEGG: aav:Aave_4080 thioesterase superfamily protein; thioesterase superfamily protein complement(1501382..1501858) Delftia acidovorans SPH-1 5746903 YP_001562378.1 CDS Daci_1349 NC_010002.1 1501900 1503726 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3493 ABC transporter related; ABC transporter-like protein 1501900..1503726 Delftia acidovorans SPH-1 5746904 YP_001562379.1 CDS Daci_1350 NC_010002.1 1503787 1505754 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: bbr:BB3096 putative peptidase; peptidase S9 prolyl oligopeptidase complement(1503787..1505754) Delftia acidovorans SPH-1 5746905 YP_001562380.1 CDS Daci_1351 NC_010002.1 1505910 1506668 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pna:Pnap_2731 transcriptional regulator, GntR family; GntR family transcriptional regulator 1505910..1506668 Delftia acidovorans SPH-1 5746906 YP_001562381.1 CDS Daci_1352 NC_010002.1 1506763 1507854 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pna:Pnap_2725 Rieske (2Fe-2S) domain protein; vanillate monooxygenase 1506763..1507854 Delftia acidovorans SPH-1 5746907 YP_001562382.1 CDS Daci_1353 NC_010002.1 1507953 1508426 D PFAM: regulatory protein MarR; KEGG: rfr:Rfer_0279 transcriptional regulator, MarR family; MarR family transcriptional regulator 1507953..1508426 Delftia acidovorans SPH-1 5746908 YP_001562383.1 CDS Daci_1354 NC_010002.1 1508681 1510033 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ppu:PP_3740 major facilitator family transporter; major facilitator transporter 1508681..1510033 Delftia acidovorans SPH-1 5746909 YP_001562384.1 CDS Daci_1355 NC_010002.1 1510064 1511140 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_4593 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 1510064..1511140 Delftia acidovorans SPH-1 5746910 YP_001562385.1 CDS Daci_1356 NC_010002.1 1511173 1512135 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin; phthalate 4,5-dioxygenase 1511173..1512135 Delftia acidovorans SPH-1 5746911 YP_001562386.1 CDS Daci_1357 NC_010002.1 1512242 1513189 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_5796 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1512242..1513189 Delftia acidovorans SPH-1 5746912 YP_001562387.1 CDS Daci_1358 NC_010002.1 1513198 1513623 R KEGG: xcb:XC_0350 hypothetical protein; hypothetical protein complement(1513198..1513623) Delftia acidovorans SPH-1 5746913 YP_001562388.1 CDS Daci_1359 NC_010002.1 1513755 1514411 D PFAM: regulatory protein TetR; KEGG: aav:Aave_3134 transcriptional regulator, TetR family; TetR family transcriptional regulator 1513755..1514411 Delftia acidovorans SPH-1 5746914 YP_001562389.1 CDS Daci_1360 NC_010002.1 1514568 1515611 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1514568..1515611) Delftia acidovorans SPH-1 5746915 YP_001562390.1 CDS Daci_1361 NC_010002.1 1515644 1516942 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1515644..1516942) Delftia acidovorans SPH-1 5746916 YP_001562391.1 CDS Daci_1362 NC_010002.1 1516939 1517484 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aav:Aave_4076 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1516939..1517484) Delftia acidovorans SPH-1 5746917 YP_001562392.1 CDS Daci_1363 NC_010002.1 1517802 1518746 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0607 transcriptional regulator, LysR family; LysR family transcriptional regulator 1517802..1518746 Delftia acidovorans SPH-1 5746918 YP_001562393.1 CDS Daci_1364 NC_010002.1 1519190 1520089 D PFAM: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0609 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1519190..1520089 Delftia acidovorans SPH-1 5746919 YP_001562394.1 CDS Daci_1365 NC_010002.1 1520202 1520954 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein 1520202..1520954 Delftia acidovorans SPH-1 5746920 YP_001562395.1 CDS Daci_1366 NC_010002.1 1520956 1521627 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein 1520956..1521627 Delftia acidovorans SPH-1 5746921 YP_001562396.1 CDS Daci_1367 NC_010002.1 1521778 1522515 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0612 ABC transporter related; ABC transporter-like protein 1521778..1522515 Delftia acidovorans SPH-1 5746922 YP_001562397.1 CDS Daci_1368 NC_010002.1 1522571 1523515 R PFAM: sugar isomerase (SIS); KEGG: aav:Aave_1915 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(1522571..1523515) Delftia acidovorans SPH-1 5746923 YP_001562398.1 CDS Daci_1369 NC_010002.1 1523593 1524777 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_1914 peptidase M20; peptidase dimerisation domain-containing protein 1523593..1524777 Delftia acidovorans SPH-1 5746924 YP_001562399.1 CDS Daci_1370 NC_010002.1 1524792 1525808 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1913 uncharacterized protein UPF0065; hypothetical protein 1524792..1525808 Delftia acidovorans SPH-1 5746925 YP_001562400.1 CDS Daci_1371 NC_010002.1 1525885 1526913 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1913 uncharacterized protein UPF0065; hypothetical protein 1525885..1526913 Delftia acidovorans SPH-1 5746926 YP_001562401.1 CDS Daci_1372 NC_010002.1 1526938 1527927 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5161 uncharacterized protein UPF0065; hypothetical protein complement(1526938..1527927) Delftia acidovorans SPH-1 5746927 YP_001562402.1 CDS Daci_1373 NC_010002.1 1527979 1529232 R PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like; beta-lactamase domain-containing protein complement(1527979..1529232) Delftia acidovorans SPH-1 5746928 YP_001562403.1 CDS Daci_1374 NC_010002.1 1529229 1530566 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3898 protein of unknown function DUF1214:protein of unknown function DUF1254; hypothetical protein complement(1529229..1530566) Delftia acidovorans SPH-1 5746929 YP_001562404.1 CDS Daci_1375 NC_010002.1 1530563 1531960 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3704 protein of unknown function DUF1214:protein of unknown function DUF1254; hypothetical protein complement(1530563..1531960) Delftia acidovorans SPH-1 5746930 YP_001562405.1 CDS Daci_1376 NC_010002.1 1531985 1533007 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3913 uncharacterized protein UPF0065; hypothetical protein complement(1531985..1533007) Delftia acidovorans SPH-1 5746931 YP_001562406.1 CDS Daci_1377 NC_010002.1 1533004 1535121 R PFAM: CoA-binding domain protein; KEGG: rme:Rmet_3916 CoA-binding; CoA-binding domain-containing protein complement(1533004..1535121) Delftia acidovorans SPH-1 5746932 YP_001562407.1 CDS Daci_1378 NC_010002.1 1535131 1536195 R PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type; porin complement(1535131..1536195) Delftia acidovorans SPH-1 5746933 YP_001562408.1 CDS Daci_1379 NC_010002.1 1536349 1537086 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: abo:ABO_1600 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 1536349..1537086 Delftia acidovorans SPH-1 5746934 YP_001562409.1 CDS Daci_1380 NC_010002.1 1537103 1538032 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psb:Psyr_3111 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1537103..1538032) Delftia acidovorans SPH-1 5746935 YP_001562410.1 CDS Daci_1381 NC_010002.1 1538070 1539134 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_2905 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1538070..1539134 Delftia acidovorans SPH-1 5746936 YP_001562411.1 CDS Daci_1382 NC_010002.1 1539158 1539853 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: smd:Smed_5904 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 1539158..1539853 Delftia acidovorans SPH-1 5746937 YP_001562412.1 CDS Daci_1383 NC_010002.1 1539921 1540898 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_2904 uncharacterized protein UPF0065; hypothetical protein 1539921..1540898 Delftia acidovorans SPH-1 5746938 YP_001562413.1 CDS Daci_1384 NC_010002.1 1540901 1542136 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bte:BTH_II0813 dehydrogenase, FMN-dependent family; L-lactate dehydrogenase 1540901..1542136 Delftia acidovorans SPH-1 5746939 YP_001562414.1 CDS Daci_1385 NC_010002.1 1542209 1543249 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1542209..1543249 Delftia acidovorans SPH-1 5746940 YP_001562415.1 CDS Daci_1386 NC_010002.1 1543283 1544194 D PFAM: protein of unknown function DUF88; KEGG: aav:Aave_4318 protein of unknown function DUF88; hypothetical protein 1543283..1544194 Delftia acidovorans SPH-1 5746941 YP_001562416.1 CDS Daci_1387 NC_010002.1 1544191 1545000 D KEGG: aav:Aave_4317 putative transmembrane protein; putative transmembrane protein 1544191..1545000 Delftia acidovorans SPH-1 5746942 YP_001562417.1 CDS Daci_1388 NC_010002.1 1544997 1545962 D putative metalloprotease; heat shock protein HtpX 1544997..1545962 Delftia acidovorans SPH-1 5746943 YP_001562418.1 CDS Daci_1389 NC_010002.1 1546117 1546374 D TIGRFAM: prevent-host-death family protein; KEGG: nwi:Nwi_0856 prevent-host-death protein; prevent-host-death family protein 1546117..1546374 Delftia acidovorans SPH-1 5746944 YP_001562419.1 CDS Daci_1390 NC_010002.1 1546374 1546799 D PFAM: PilT protein domain protein; KEGG: gox:GOX2554 plasmid stability-like protein; PilT domain-containing protein 1546374..1546799 Delftia acidovorans SPH-1 5746945 YP_001562420.1 CDS Daci_1391 NC_010002.1 1546928 1547287 D KEGG: ajs:Ajs_3741 hypothetical protein; hypothetical protein 1546928..1547287 Delftia acidovorans SPH-1 5746946 YP_001562421.1 CDS Daci_1392 NC_010002.1 1547289 1548206 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3740 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1547289..1548206) Delftia acidovorans SPH-1 5746947 YP_001562422.1 CDS Daci_1393 NC_010002.1 1548481 1550598 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 1548481..1550598 Delftia acidovorans SPH-1 5746948 YP_001562423.1 CDS Daci_1394 NC_010002.1 1550707 1551903 D KEGG: ajs:Ajs_3738 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1550707..1551903 Delftia acidovorans SPH-1 5746949 YP_001562424.1 CDS Daci_1395 NC_010002.1 1552070 1553266 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_4313 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1552070..1553266 Delftia acidovorans SPH-1 5746950 YP_001562425.1 CDS Daci_1396 NC_010002.1 1553287 1554423 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3736 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1553287..1554423 Delftia acidovorans SPH-1 5746951 YP_001562426.1 CDS Daci_1397 NC_010002.1 1554440 1555240 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1554440..1555240 Delftia acidovorans SPH-1 5746952 YP_001562427.1 CDS Daci_1398 NC_010002.1 1555283 1556539 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1555283..1556539 Delftia acidovorans SPH-1 5746953 YP_001562428.1 CDS Daci_1399 NC_010002.1 1556658 1557677 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_4309 uncharacterized protein UPF0065; hypothetical protein 1556658..1557677 Delftia acidovorans SPH-1 5746954 YP_001562429.1 CDS Daci_1400 NC_010002.1 1557743 1558756 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3733 uncharacterized protein UPF0065; hypothetical protein 1557743..1558756 Delftia acidovorans SPH-1 5746955 YP_001562430.1 CDS Daci_1401 NC_010002.1 1558764 1559738 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1558764..1559738 Delftia acidovorans SPH-1 5746956 YP_001562431.1 CDS Daci_1402 NC_010002.1 1559861 1560610 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_3731 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 1559861..1560610 Delftia acidovorans SPH-1 5746957 YP_001562432.1 CDS Daci_1403 NC_010002.1 1560624 1561556 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1560624..1561556 Delftia acidovorans SPH-1 5746958 YP_001562433.1 CDS Daci_1404 NC_010002.1 1561682 1562668 D PFAM: conserved hypothetical protein; KEGG: reh:H16_A1555 probable extra-cytoplasmic solute receptor; hypothetical protein 1561682..1562668 Delftia acidovorans SPH-1 5746959 YP_001562434.1 CDS Daci_1405 NC_010002.1 1562755 1564299 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2076 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase/ligase 1562755..1564299 Delftia acidovorans SPH-1 5746960 YP_001562435.1 CDS Daci_1406 NC_010002.1 1564347 1565117 D PFAM: class II aldolase/adducin family protein; KEGG: aav:Aave_4305 class II aldolase/adducin family protein; aldolase II superfamily protein 1564347..1565117 Delftia acidovorans SPH-1 5746961 YP_001562436.1 CDS Daci_1407 NC_010002.1 1565126 1566055 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: reh:H16_B0841 D-3-phosphoglycerate dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1565126..1566055 Delftia acidovorans SPH-1 5746962 YP_001562437.1 CDS Daci_1408 NC_010002.1 1566211 1567206 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_4304 uncharacterized protein UPF0065; hypothetical protein 1566211..1567206 Delftia acidovorans SPH-1 5746963 YP_001562438.1 CDS Daci_1409 NC_010002.1 1567455 1568084 D KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit 1567455..1568084 Delftia acidovorans SPH-1 5746964 YP_001562439.1 CDS Daci_1410 NC_010002.1 1568126 1568569 D PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4532 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1568126..1568569 Delftia acidovorans SPH-1 5746965 YP_001562440.1 CDS Daci_1411 NC_010002.1 1568545 1568895 D PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein 1568545..1568895 Delftia acidovorans SPH-1 5746966 YP_001562441.1 CDS Daci_1412 NC_010002.1 1568997 1570592 D PFAM: transposase IS66; KEGG: pna:Pnap_2521 transposase IS66; transposase IS66 1568997..1570592 Delftia acidovorans SPH-1 5746967 YP_001562442.1 CDS Daci_1413 NC_010002.1 1570626 1571339 R TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: bvi:Bcep1808_2979 YecA family protein; yecA family protein complement(1570626..1571339) Delftia acidovorans SPH-1 5746968 YP_001562443.1 CDS Daci_1414 NC_010002.1 1571414 1572070 D KEGG: pen:PSEEN4950 transposase; transposase 1571414..1572070 Delftia acidovorans SPH-1 5746969 YP_001562444.1 CDS Daci_1415 NC_010002.1 1572391 1572660 R hypothetical protein complement(1572391..1572660) Delftia acidovorans SPH-1 5746970 YP_001562445.1 CDS Daci_1416 NC_010002.1 1573137 1574156 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_4871 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1573137..1574156) Delftia acidovorans SPH-1 5746971 YP_001562446.1 CDS Daci_1417 NC_010002.1 1574253 1575629 D KEGG: reh:H16_A1453 putative peptidase, M20D subfamily; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1574253..1575629 Delftia acidovorans SPH-1 5746972 YP_001562447.1 CDS Daci_1418 NC_010002.1 1575796 1576365 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: xcb:XC_0564 hypothetical protein; hypothetical protein complement(1575796..1576365) Delftia acidovorans SPH-1 5746973 YP_001562448.1 CDS Daci_1419 NC_010002.1 1576362 1578146 R PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_3727 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1576362..1578146) Delftia acidovorans SPH-1 5746974 YP_001562449.1 CDS Daci_1420 NC_010002.1 1578634 1580649 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; KEGG: bam:Bamb_5443 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin outer membrane protein 1578634..1580649 Delftia acidovorans SPH-1 5746975 YP_001562450.1 CDS Daci_1421 NC_010002.1 1580655 1582352 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: reu:Reut_A2932 hemolysin activator HlyB; polypeptide-transport-associated domain-containing protein 1580655..1582352 Delftia acidovorans SPH-1 5746976 YP_001562451.1 CDS Daci_1422 NC_010002.1 1582523 1584121 D KEGG: ade:Adeh_0244 LigA; LigA protein 1582523..1584121 Delftia acidovorans SPH-1 5746977 YP_001562452.1 CDS Daci_1423 NC_010002.1 1584984 1586588 R KEGG: rci:RRC32 hypothetical protein; hypothetical protein complement(1584984..1586588) Delftia acidovorans SPH-1 5746978 YP_001562453.1 CDS Daci_1424 NC_010002.1 1586619 1592804 D TIGRFAM: adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; KEGG: bpl:BURPS1106A_1129 cell surface protein; adhesin 1586619..1592804 Delftia acidovorans SPH-1 5746979 YP_001562454.1 CDS Daci_1425 NC_010002.1 1593263 1593712 D hypothetical protein 1593263..1593712 Delftia acidovorans SPH-1 5746980 YP_001562455.1 CDS Daci_1426 NC_010002.1 1593939 1594193 D hypothetical protein 1593939..1594193 Delftia acidovorans SPH-1 5746981 YP_001562456.1 CDS Daci_1427 NC_010002.1 1594235 1594600 D KEGG: bam:Bamb_5427 hypothetical protein; hypothetical protein 1594235..1594600 Delftia acidovorans SPH-1 5746982 YP_001562457.1 CDS Daci_1428 NC_010002.1 1595100 1595504 D KEGG: rso:RS03931 probable transmembrane protein; putative transmembrane protein 1595100..1595504 Delftia acidovorans SPH-1 5746983 YP_001562458.1 CDS Daci_1429 NC_010002.1 1596010 1596273 D KEGG: bam:Bamb_3781 hypothetical protein; hypothetical protein 1596010..1596273 Delftia acidovorans SPH-1 5746984 YP_001562459.1 CDS Daci_1430 NC_010002.1 1596307 1596621 D hypothetical protein 1596307..1596621 Delftia acidovorans SPH-1 5746985 YP_001562460.1 CDS Daci_1431 NC_010002.1 1597126 1597536 D hypothetical protein 1597126..1597536 Delftia acidovorans SPH-1 5746986 YP_001562461.1 CDS Daci_1432 NC_010002.1 1597635 1598015 D KEGG: reu:Reut_A2925 hypothetical protein; hypothetical protein 1597635..1598015 Delftia acidovorans SPH-1 5746987 YP_001562462.1 CDS Daci_1433 NC_010002.1 1598163 1599881 D PFAM: Heat shock protein 70; KEGG: rso:RSp0521 probable chaperone transmembrane protein; 2-alkenal reductase 1598163..1599881 Delftia acidovorans SPH-1 5746988 YP_001562463.1 CDS Daci_1434 NC_010002.1 1599884 1601584 D PFAM: heat shock protein DnaJ domain protein; KEGG: rso:RS00401 hypothetical protein; heat shock protein DnaJ domain-containing protein 1599884..1601584 Delftia acidovorans SPH-1 5746989 YP_001562464.1 CDS Daci_1435 NC_010002.1 1601817 1603805 D KEGG: aav:Aave_3307 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1601817..1603805 Delftia acidovorans SPH-1 5746990 YP_001562465.1 CDS Daci_1436 NC_010002.1 1604189 1605145 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_1719 uncharacterized protein UPF0065; hypothetical protein 1604189..1605145 Delftia acidovorans SPH-1 5746991 YP_001562466.1 CDS fumC NC_010002.1 1605151 1606584 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1605151..1606584) Delftia acidovorans SPH-1 5746992 YP_001562467.1 CDS Daci_1438 NC_010002.1 1606589 1607581 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_4597 uncharacterized protein UPF0065; hypothetical protein complement(1606589..1607581) Delftia acidovorans SPH-1 5746993 YP_001562468.1 CDS Daci_1439 NC_010002.1 1607626 1609008 R TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: vei:Veis_4598 fumarate lyase; 3-carboxy-cis,cis-muconate cycloisomerase complement(1607626..1609008) Delftia acidovorans SPH-1 5746994 YP_001562469.1 CDS Daci_1440 NC_010002.1 1609106 1609852 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: vei:Veis_4599 transcriptional regulator, fis family; GntR family transcriptional regulator 1609106..1609852 Delftia acidovorans SPH-1 5746995 YP_001562470.1 CDS Daci_1441 NC_010002.1 1609849 1611705 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2089 ABC transporter related; ABC transporter-like protein complement(1609849..1611705) Delftia acidovorans SPH-1 5746996 YP_001562471.1 CDS Daci_1442 NC_010002.1 1612013 1612930 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_4297 cysteine synthase A; cysteine synthase complement(1612013..1612930) Delftia acidovorans SPH-1 5746997 YP_001562472.1 CDS Daci_1443 NC_010002.1 1613071 1614006 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4170 transcriptional regulator, LysR family; LysR family transcriptional regulator 1613071..1614006 Delftia acidovorans SPH-1 5746998 YP_001562473.1 CDS Daci_1444 NC_010002.1 1614027 1615397 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1614027..1615397) Delftia acidovorans SPH-1 5746999 YP_001562474.1 CDS Daci_1445 NC_010002.1 1615448 1616125 R KEGG: bbr:BB2999 hypothetical protein; hypothetical protein complement(1615448..1616125) Delftia acidovorans SPH-1 5747000 YP_001562475.1 CDS Daci_1446 NC_010002.1 1616213 1617532 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1; major facilitator transporter complement(1616213..1617532) Delftia acidovorans SPH-1 5747001 YP_001562476.1 CDS Daci_1447 NC_010002.1 1617806 1618705 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein; hypothetical protein complement(1617806..1618705) Delftia acidovorans SPH-1 5747002 YP_001562477.1 CDS Daci_1448 NC_010002.1 1618907 1619680 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_55730 putative transcriptional regulator, AraC family; AraC family transcriptional regulator 1618907..1619680 Delftia acidovorans SPH-1 5747003 YP_001562478.1 CDS Daci_1449 NC_010002.1 1620214 1622682 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1870 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor complement(1620214..1622682) Delftia acidovorans SPH-1 5747005 YP_001562479.1 CDS Daci_1450 NC_010002.1 1622837 1624159 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(1622837..1624159) Delftia acidovorans SPH-1 5747006 YP_001562480.1 CDS Daci_1451 NC_010002.1 1624255 1624998 R PFAM: RNA-binding S4 domain protein; KEGG: aav:Aave_0792 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(1624255..1624998) Delftia acidovorans SPH-1 5747007 YP_001562481.1 CDS Daci_1452 NC_010002.1 1625052 1626722 R PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: aav:Aave_0793 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(1625052..1626722) Delftia acidovorans SPH-1 5747008 YP_001562482.1 CDS dapF NC_010002.1 1626838 1627698 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1626838..1627698 Delftia acidovorans SPH-1 5747009 YP_001562483.1 CDS Daci_1454 NC_010002.1 1627695 1628408 D PFAM: protein of unknown function DUF484; KEGG: ajs:Ajs_3687 protein of unknown function DUF484; hypothetical protein 1627695..1628408 Delftia acidovorans SPH-1 5747010 YP_001562484.1 CDS Daci_1455 NC_010002.1 1628423 1629520 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aav:Aave_0801 phage integrase family protein; integrase family protein 1628423..1629520 Delftia acidovorans SPH-1 5747011 YP_001562485.1 CDS Daci_1456 NC_010002.1 1629616 1630770 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ajs:Ajs_3684 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 1629616..1630770 Delftia acidovorans SPH-1 5747012 YP_001562486.1 CDS Daci_1457 NC_010002.1 1631302 1631796 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: ajs:Ajs_3683 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 1631302..1631796 Delftia acidovorans SPH-1 5747013 YP_001562487.1 CDS Daci_1458 NC_010002.1 1631842 1633623 D KEGG: vei:Veis_4558 hypothetical protein; hypothetical protein 1631842..1633623 Delftia acidovorans SPH-1 5747014 YP_001562488.1 CDS Daci_1459 NC_010002.1 1633748 1634293 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1633748..1634293 Delftia acidovorans SPH-1 5747015 YP_001562489.1 CDS hslU NC_010002.1 1634393 1635730 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1634393..1635730 Delftia acidovorans SPH-1 5747016 YP_001562490.1 CDS Daci_1461 NC_010002.1 1636099 1636527 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1636099..1636527 Delftia acidovorans SPH-1 5747017 YP_001562491.1 CDS mraW NC_010002.1 1636543 1637472 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: aav:Aave_0813 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 1636543..1637472 Delftia acidovorans SPH-1 5747018 YP_001562492.1 CDS Daci_1463 NC_010002.1 1637510 1637794 D PFAM: cell division protein FtsL; KEGG: ajs:Ajs_3677 cell division protein FtsL; cell division protein FtsL 1637510..1637794 Delftia acidovorans SPH-1 5747019 YP_001562493.1 CDS Daci_1464 NC_010002.1 1637791 1639539 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ajs:Ajs_3676 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1637791..1639539 Delftia acidovorans SPH-1 5747020 YP_001562494.1 CDS murE NC_010002.1 1639536 1641065 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1639536..1641065 Delftia acidovorans SPH-1 5747021 YP_001562495.1 CDS Daci_1466 NC_010002.1 1641062 1642477 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1641062..1642477 Delftia acidovorans SPH-1 5747022 YP_001562496.1 CDS mraY NC_010002.1 1642468 1643646 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1642468..1643646 Delftia acidovorans SPH-1 5747023 YP_001562497.1 CDS Daci_1468 NC_010002.1 1643651 1645603 D TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aav:Aave_0819 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1643651..1645603 Delftia acidovorans SPH-1 5747024 YP_001562498.1 CDS Daci_1469 NC_010002.1 1645600 1646865 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: ajs:Ajs_3671 cell division protein FtsW; cell division protein FtsW 1645600..1646865 Delftia acidovorans SPH-1 5747025 YP_001562499.1 CDS murG NC_010002.1 1646862 1647956 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1646862..1647956 Delftia acidovorans SPH-1 5747026 YP_001562500.1 CDS murC NC_010002.1 1647953 1649386 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1647953..1649386 Delftia acidovorans SPH-1 5747027 YP_001562501.1 CDS ddl NC_010002.1 1649383 1650363 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1649383..1650363 Delftia acidovorans SPH-1 5747028 YP_001562502.1 CDS Daci_1473 NC_010002.1 1650360 1651160 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: vei:Veis_4573 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 1650360..1651160 Delftia acidovorans SPH-1 5747029 YP_001562503.1 CDS Daci_1474 NC_010002.1 1651245 1652474 D PFAM: cell division protein FtsA; KEGG: ajs:Ajs_3666 cell division protein FtsA; cell division protein FtsA 1651245..1652474 Delftia acidovorans SPH-1 5747030 YP_001562504.1 CDS Daci_1475 NC_010002.1 1652594 1653832 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: aav:Aave_0826 cell division protein FtsZ; cell division protein FtsZ 1652594..1653832 Delftia acidovorans SPH-1 5747031 YP_001562505.1 CDS lpxC NC_010002.1 1653926 1654849 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1653926..1654849 Delftia acidovorans SPH-1 5747032 YP_001562506.1 CDS Daci_1477 NC_010002.1 1654863 1655039 D KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein 1654863..1655039 Delftia acidovorans SPH-1 5747033 YP_001562507.1 CDS Daci_1478 NC_010002.1 1655435 1656742 D KEGG: mca:MCA0115 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; coproporphyrinogen dehydrogenase 1655435..1656742 Delftia acidovorans SPH-1 5747034 YP_001562508.1 CDS Daci_1479 NC_010002.1 1656749 1657678 D PFAM: alpha/beta hydrolase fold; KEGG: pcr:Pcryo_2203 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1656749..1657678 Delftia acidovorans SPH-1 5747035 YP_001562509.1 CDS ruvC NC_010002.1 1657654 1658202 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1657654..1658202) Delftia acidovorans SPH-1 5747036 YP_001562510.1 CDS Daci_1481 NC_010002.1 1658220 1658936 R TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: aav:Aave_0840 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase complement(1658220..1658936) Delftia acidovorans SPH-1 5747037 YP_001562511.1 CDS aroE NC_010002.1 1658944 1659801 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1658944..1659801) Delftia acidovorans SPH-1 5747038 YP_001562512.1 CDS Daci_1483 NC_010002.1 1659840 1660703 R TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein; TonB family protein complement(1659840..1660703) Delftia acidovorans SPH-1 5747039 YP_001562513.1 CDS Daci_1484 NC_010002.1 1660740 1662818 R PFAM: ribonuclease II; KEGG: aav:Aave_0843 ribonuclease II; ribonuclease II complement(1660740..1662818) Delftia acidovorans SPH-1 5747040 YP_001562514.1 CDS Daci_1485 NC_010002.1 1662874 1663458 R PFAM: protein of unknown function UPF0227; KEGG: ajs:Ajs_3649 protein of unknown function UPF0227; hypothetical protein complement(1662874..1663458) Delftia acidovorans SPH-1 5747041 YP_001562515.1 CDS Daci_1486 NC_010002.1 1663671 1664840 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: ajs:Ajs_3647 rod shape-determining protein RodA; rod shape-determining protein RodA 1663671..1664840 Delftia acidovorans SPH-1 5747042 YP_001562516.1 CDS Daci_1487 NC_010002.1 1665193 1666653 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ajs:Ajs_3646 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 1665193..1666653 Delftia acidovorans SPH-1 5747043 YP_001562517.1 CDS Daci_1488 NC_010002.1 1667808 1668965 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1667808..1668965 Delftia acidovorans SPH-1 5747044 YP_001562518.1 CDS Daci_1489 NC_010002.1 1669024 1669422 R PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446; hypothetical protein complement(1669024..1669422) Delftia acidovorans SPH-1 5747045 YP_001562519.1 CDS Daci_1490 NC_010002.1 1669652 1669969 D KEGG: aav:Aave_0853 hypothetical protein; hypothetical protein 1669652..1669969 Delftia acidovorans SPH-1 5747046 YP_001562520.1 CDS Daci_1491 NC_010002.1 1670044 1671483 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aav:Aave_0854 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(1670044..1671483) Delftia acidovorans SPH-1 5747047 YP_001562521.1 CDS Daci_1492 NC_010002.1 1671773 1672336 D KEGG: aav:Aave_0855 hypothetical protein; hypothetical protein 1671773..1672336 Delftia acidovorans SPH-1 5747048 YP_001562522.1 CDS Daci_1493 NC_010002.1 1672311 1672883 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aav:Aave_0856 redoxin domain protein; redoxin domain-containing protein 1672311..1672883 Delftia acidovorans SPH-1 5747049 YP_001562523.1 CDS Daci_1494 NC_010002.1 1673029 1673493 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ajs:Ajs_3639 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1673029..1673493 Delftia acidovorans SPH-1 5747050 YP_001562524.1 CDS Daci_1495 NC_010002.1 1673626 1674990 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 1673626..1674990 Delftia acidovorans SPH-1 5747051 YP_001562525.1 CDS prmA NC_010002.1 1675075 1675965 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1675075..1675965 Delftia acidovorans SPH-1 5747052 YP_001562526.1 CDS Daci_1497 NC_010002.1 1676041 1677468 D TIGRFAM: MJ0042 family finger-like protein; KEGG: aav:Aave_0860 MJ0042 family finger-like protein; Zinc finger-domain-containing protein 1676041..1677468 Delftia acidovorans SPH-1 5747053 YP_001562527.1 CDS Daci_1498 NC_010002.1 1677504 1678406 D PFAM: PfkB domain protein; KEGG: ajs:Ajs_3635 PfkB domain protein; ribokinase-like domain-containing protein 1677504..1678406 Delftia acidovorans SPH-1 5747054 YP_001562528.1 CDS Daci_1499 NC_010002.1 1678504 1679460 R KEGG: aav:Aave_0862 histone protein; hypothetical protein complement(1678504..1679460) Delftia acidovorans SPH-1 5747055 YP_001562529.1 CDS Daci_1500 NC_010002.1 1679638 1680729 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(1679638..1680729) Delftia acidovorans SPH-1 5747056 YP_001562530.1 CDS Daci_1501 NC_010002.1 1680936 1683857 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1680936..1683857) Delftia acidovorans SPH-1 5747057 YP_001562531.1 CDS Daci_1502 NC_010002.1 1684388 1685023 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: aav:Aave_0865 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase complement(1684388..1685023) Delftia acidovorans SPH-1 5747058 YP_001562532.1 CDS Daci_1503 NC_010002.1 1685010 1686551 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aav:Aave_0866 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54-specific transcriptional regulator complement(1685010..1686551) Delftia acidovorans SPH-1 5747059 YP_001562533.1 CDS Daci_1504 NC_010002.1 1686551 1688314 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_0867 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(1686551..1688314) Delftia acidovorans SPH-1 5747060 YP_001562534.1 CDS Daci_1505 NC_010002.1 1688317 1688577 R KEGG: ajs:Ajs_3628 hypothetical protein; hypothetical protein complement(1688317..1688577) Delftia acidovorans SPH-1 5747061 YP_001562535.1 CDS Daci_1506 NC_010002.1 1688574 1689389 R PFAM: cytochrome c assembly protein; KEGG: ajs:Ajs_3627 cytochrome c assembly protein; cytochrome c assembly protein complement(1688574..1689389) Delftia acidovorans SPH-1 5747062 YP_001562536.1 CDS Daci_1507 NC_010002.1 1689473 1690399 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: azo:azo2403 probable two-component response regulator; response regulator receiver modulated diguanylate cyclase complement(1689473..1690399) Delftia acidovorans SPH-1 5747063 YP_001562537.1 CDS Daci_1508 NC_010002.1 1690392 1694303 R KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(1690392..1694303) Delftia acidovorans SPH-1 5747064 YP_001562538.1 CDS Daci_1509 NC_010002.1 1694561 1695955 D KEGG: ajs:Ajs_3626 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1694561..1695955 Delftia acidovorans SPH-1 5747065 YP_001562539.1 CDS Daci_1510 NC_010002.1 1696062 1696616 D PFAM: NLP/P60 protein; KEGG: rme:Rmet_1972 NLP/P60; NLP/P60 protein 1696062..1696616 Delftia acidovorans SPH-1 5747066 YP_001562540.1 CDS Daci_1511 NC_010002.1 1696697 1697101 D KEGG: csa:Csal_0802 hypothetical protein; hypothetical protein 1696697..1697101 Delftia acidovorans SPH-1 5747067 YP_001562541.1 CDS Daci_1512 NC_010002.1 1697150 1697824 R KEGG: pfl:PFL_4494 hypothetical protein; hypothetical protein complement(1697150..1697824) Delftia acidovorans SPH-1 5747068 YP_001562542.1 CDS Daci_1513 NC_010002.1 1697821 1699092 R KEGG: pfl:PFL_4493 hypothetical protein; hypothetical protein complement(1697821..1699092) Delftia acidovorans SPH-1 5747069 YP_001562543.1 CDS Daci_1514 NC_010002.1 1699086 1701470 R KEGG: pfl:PFL_4492 hypothetical protein; hypothetical protein complement(1699086..1701470) Delftia acidovorans SPH-1 5747070 YP_001562544.1 CDS Daci_1515 NC_010002.1 1701578 1702906 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1701578..1702906) Delftia acidovorans SPH-1 5747071 YP_001562545.1 CDS Daci_1516 NC_010002.1 1703074 1703481 R KEGG: aav:Aave_0876 hypothetical protein; hypothetical protein complement(1703074..1703481) Delftia acidovorans SPH-1 5747072 YP_001562546.1 CDS Daci_1517 NC_010002.1 1703546 1704478 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: aav:Aave_3826 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase family accessory protein FdhD complement(1703546..1704478) Delftia acidovorans SPH-1 5747073 YP_001562547.1 CDS Daci_1518 NC_010002.1 1704531 1705661 R KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase complement(1704531..1705661) Delftia acidovorans SPH-1 5747074 YP_001562548.1 CDS Daci_1519 NC_010002.1 1705658 1706338 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(1705658..1706338) Delftia acidovorans SPH-1 5747075 YP_001562549.1 CDS Daci_1520 NC_010002.1 1706490 1707308 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3124 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(1706490..1707308) Delftia acidovorans SPH-1 5747076 YP_001562550.1 CDS Daci_1521 NC_010002.1 1707346 1708182 D PFAM: regulatory protein LysR; TOBE domain protein; KEGG: aav:Aave_2030 putative transcriptional regulator, ModE family; ModE family transcriptional regulator 1707346..1708182 Delftia acidovorans SPH-1 5747077 YP_001562551.1 CDS Daci_1522 NC_010002.1 1708382 1708657 D hypothetical protein 1708382..1708657 Delftia acidovorans SPH-1 5747078 YP_001562552.1 CDS Daci_1523 NC_010002.1 1708654 1709166 D KEGG: aav:Aave_1558 hypothetical protein; hypothetical protein 1708654..1709166 Delftia acidovorans SPH-1 5747079 YP_001562553.1 CDS Daci_1524 NC_010002.1 1709261 1710736 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: hiq:CGSHiGG_09170 transporter protein; major facilitator transporter complement(1709261..1710736) Delftia acidovorans SPH-1 5747080 YP_001562554.1 CDS Daci_1525 NC_010002.1 1711056 1712342 D KEGG: aav:Aave_1925 putative iron-regulated protein; putative iron-regulated protein 1711056..1712342 Delftia acidovorans SPH-1 5747081 YP_001562555.1 CDS Daci_1526 NC_010002.1 1712447 1713958 D PFAM: protein of unknown function DUF1111; KEGG: pna:Pnap_2562 protein of unknown function DUF1111; hypothetical protein 1712447..1713958 Delftia acidovorans SPH-1 5747082 YP_001562556.1 CDS Daci_1527 NC_010002.1 1713958 1715043 D KEGG: aav:Aave_1923 periplasmic lipoprotein-like protein; periplasmic lipoprotein-like protein 1713958..1715043 Delftia acidovorans SPH-1 5747083 YP_001562557.1 CDS Daci_1528 NC_010002.1 1715027 1716229 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A1461 hypothetical protein; hypothetical protein 1715027..1716229 Delftia acidovorans SPH-1 5747084 YP_001562558.1 CDS Daci_1529 NC_010002.1 1716530 1717309 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1716530..1717309) Delftia acidovorans SPH-1 5747086 YP_001562559.1 CDS Daci_1530 NC_010002.1 1717384 1719309 R PFAM: peptidase M61 domain protein; KEGG: ajs:Ajs_3622 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(1717384..1719309) Delftia acidovorans SPH-1 5747087 YP_001562560.1 CDS Daci_1531 NC_010002.1 1719439 1720257 R KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(1719439..1720257) Delftia acidovorans SPH-1 5747088 YP_001562561.1 CDS Daci_1532 NC_010002.1 1720302 1721570 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: ajs:Ajs_3620 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(1720302..1721570) Delftia acidovorans SPH-1 5747089 YP_001562562.1 CDS Daci_1533 NC_010002.1 1721621 1722487 D PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: aav:Aave_0886 MOSC domain protein beta barrel domain protein; MOSC domain-containing protein 1721621..1722487 Delftia acidovorans SPH-1 5747090 YP_001562563.1 CDS Daci_1534 NC_010002.1 1722557 1723651 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: ajs:Ajs_3618 GTP-binding protein YchF; GTP-binding protein YchF 1722557..1723651 Delftia acidovorans SPH-1 5747091 YP_001562564.1 CDS Daci_1535 NC_010002.1 1723829 1724263 D PFAM: protein of unknown function DUF1044; KEGG: plu:plu2130 hypothetical protein; hypothetical protein 1723829..1724263 Delftia acidovorans SPH-1 5747092 YP_001562565.1 CDS Daci_1536 NC_010002.1 1724241 1724558 D KEGG: plu:plu2131 putative transcriptional regulator; XRE family transcriptional regulator 1724241..1724558 Delftia acidovorans SPH-1 5747093 YP_001562566.1 CDS Daci_1537 NC_010002.1 1724592 1724936 D KEGG: bpu:BPUM_2653 hypothetical protein; hypothetical protein 1724592..1724936 Delftia acidovorans SPH-1 5747094 YP_001562567.1 CDS Daci_1538 NC_010002.1 1724942 1725820 D hypothetical protein 1724942..1725820 Delftia acidovorans SPH-1 5747095 YP_001562568.1 CDS Daci_1539 NC_010002.1 1726252 1727400 D PFAM: protein of unknown function DUF1016; KEGG: gur:Gura_1011 protein of unknown function DUF1016; hypothetical protein 1726252..1727400 Delftia acidovorans SPH-1 5747096 YP_001562569.1 CDS Daci_1540 NC_010002.1 1727515 1728549 D KEGG: bbr:BB4287 hypothetical protein; hypothetical protein 1727515..1728549 Delftia acidovorans SPH-1 5747097 YP_001562570.1 CDS Daci_1541 NC_010002.1 1728674 1729555 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1728674..1729555 Delftia acidovorans SPH-1 5747098 YP_001562571.1 CDS Daci_1542 NC_010002.1 1729566 1730561 D PFAM: conserved hypothetical protein; KEGG: bbr:BB4285 hypothetical protein; hypothetical protein 1729566..1730561 Delftia acidovorans SPH-1 5747099 YP_001562572.1 CDS Daci_1543 NC_010002.1 1730589 1731371 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(1730589..1731371) Delftia acidovorans SPH-1 5747100 YP_001562573.1 CDS Daci_1544 NC_010002.1 1731808 1732737 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_1024 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1731808..1732737) Delftia acidovorans SPH-1 5747101 YP_001562574.1 CDS Daci_1545 NC_010002.1 1732868 1734514 D catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase 1732868..1734514 Delftia acidovorans SPH-1 5747102 YP_001562575.1 CDS Daci_1546 NC_010002.1 1734543 1735481 D KEGG: azo:azo2471 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 1734543..1735481 Delftia acidovorans SPH-1 5747103 YP_001562576.1 CDS Daci_1547 NC_010002.1 1735524 1736498 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4537 uncharacterized protein UPF0065; hypothetical protein 1735524..1736498 Delftia acidovorans SPH-1 5747104 YP_001562577.1 CDS Daci_1548 NC_010002.1 1736569 1737567 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_1019 uncharacterized protein UPF0065; hypothetical protein 1736569..1737567 Delftia acidovorans SPH-1 5747105 YP_001562578.1 CDS Daci_1549 NC_010002.1 1738015 1739223 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC2145 cation efflux system protein; RND family efflux transporter MFP subunit 1738015..1739223 Delftia acidovorans SPH-1 5747106 YP_001562579.1 CDS Daci_1550 NC_010002.1 1739220 1742393 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: xcv:XCV2107 RND superfamily protein; CzcA family heavy metal efflux protein 1739220..1742393 Delftia acidovorans SPH-1 5747107 YP_001562580.1 CDS Daci_1551 NC_010002.1 1742393 1743724 D PFAM: outer membrane efflux protein; KEGG: bth:BT_4695 outer membrane efflux protein precursor; outer membrane efflux protein 1742393..1743724 Delftia acidovorans SPH-1 5747108 YP_001562581.1 CDS Daci_1552 NC_010002.1 1743910 1745058 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xom:XOO_2258 nodulation protein; histidine kinase 1743910..1745058 Delftia acidovorans SPH-1 5747109 YP_001562582.1 CDS Daci_1553 NC_010002.1 1745051 1745689 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcv:XCV2104 two-component system response regulator; two component LuxR family transcriptional regulator 1745051..1745689 Delftia acidovorans SPH-1 5747110 YP_001562583.1 CDS Daci_1554 NC_010002.1 1745751 1747412 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_0762 protein of unknown function DUF894, DitE; hypothetical protein complement(1745751..1747412) Delftia acidovorans SPH-1 5747111 YP_001562584.1 CDS Daci_1555 NC_010002.1 1747402 1747857 R PFAM: DoxX family protein; KEGG: cko:CKO_00429 hypothetical protein; DoxX family protein complement(1747402..1747857) Delftia acidovorans SPH-1 5747112 YP_001562585.1 CDS Daci_1556 NC_010002.1 1747869 1749767 R PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein; amidohydrolase 3 complement(1747869..1749767) Delftia acidovorans SPH-1 5747113 YP_001562586.1 CDS Daci_1557 NC_010002.1 1749891 1750163 R PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein; hypothetical protein complement(1749891..1750163) Delftia acidovorans SPH-1 5747114 YP_001562587.1 CDS Daci_1558 NC_010002.1 1750203 1750901 R PFAM: isochorismatase hydrolase; KEGG: smd:Smed_4075 isochorismatase hydrolase; isochorismatase hydrolase complement(1750203..1750901) Delftia acidovorans SPH-1 5747115 YP_001562588.1 CDS Daci_1559 NC_010002.1 1750971 1751675 R PFAM: Pirin domain protein; KEGG: cvi:CV_1283 hypothetical protein; pirin domain-containing protein complement(1750971..1751675) Delftia acidovorans SPH-1 5747116 YP_001562589.1 CDS Daci_1560 NC_010002.1 1751778 1752701 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_1282 probable transcriptional regulator; LysR family transcriptional regulator 1751778..1752701 Delftia acidovorans SPH-1 5747117 YP_001562590.1 CDS Daci_1561 NC_010002.1 1752743 1753279 R KEGG: ajs:Ajs_3587 hypothetical protein; hypothetical protein complement(1752743..1753279) Delftia acidovorans SPH-1 5747118 YP_001562591.1 CDS Daci_1562 NC_010002.1 1753373 1753987 D KEGG: vei:Veis_3028 hypothetical protein; hypothetical protein 1753373..1753987 Delftia acidovorans SPH-1 5747119 YP_001562592.1 CDS Daci_1563 NC_010002.1 1754131 1755201 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: ajs:Ajs_3586 putative TIM-barrel protein, nifR3 family; NifR3 family TIM-barrel protein 1754131..1755201 Delftia acidovorans SPH-1 5747120 YP_001562593.1 CDS purH NC_010002.1 1755476 1757074 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1755476..1757074 Delftia acidovorans SPH-1 5747121 YP_001562594.1 CDS Daci_1565 NC_010002.1 1757074 1757613 D PFAM: cytochrome c class I; KEGG: ajs:Ajs_3583 cytochrome c, class I; class I cytochrome c 1757074..1757613 Delftia acidovorans SPH-1 5747122 YP_001562595.1 CDS Daci_1566 NC_010002.1 1757616 1758215 D KEGG: ade:Adeh_2154 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 1757616..1758215 Delftia acidovorans SPH-1 5747123 YP_001562596.1 CDS Daci_1567 NC_010002.1 1758452 1759639 D PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit 1758452..1759639 Delftia acidovorans SPH-1 5747124 YP_001562597.1 CDS Daci_1568 NC_010002.1 1760059 1760457 D hypothetical protein 1760059..1760457 Delftia acidovorans SPH-1 5747125 YP_001562598.1 CDS Daci_1569 NC_010002.1 1760529 1761845 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1760529..1761845) Delftia acidovorans SPH-1 5747126 YP_001562599.1 CDS Daci_1570 NC_010002.1 1761906 1762862 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: aav:Aave_0899 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1 complement(1761906..1762862) Delftia acidovorans SPH-1 5747127 YP_001562600.1 CDS Daci_1571 NC_010002.1 1762984 1763130 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: ajs:Ajs_3579 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1762984..1763130 Delftia acidovorans SPH-1 5747128 YP_001562601.1 CDS Daci_1572 NC_010002.1 1763178 1763576 D PFAM: response regulator receiver; KEGG: aav:Aave_0901 response regulator receiver protein; response regulator receiver protein 1763178..1763576 Delftia acidovorans SPH-1 5747129 YP_001562602.1 CDS Daci_1573 NC_010002.1 1763576 1763941 D PFAM: response regulator receiver; KEGG: ajs:Ajs_3577 response regulator receiver protein; response regulator receiver protein 1763576..1763941 Delftia acidovorans SPH-1 5747130 YP_001562603.1 CDS Daci_1574 NC_010002.1 1763957 1764484 D PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein; CheW protein 1763957..1764484 Delftia acidovorans SPH-1 5747131 YP_001562604.1 CDS Daci_1575 NC_010002.1 1764503 1766752 D PFAM: chemotaxis sensory transducer; KEGG: aav:Aave_0904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1764503..1766752 Delftia acidovorans SPH-1 5747132 YP_001562605.1 CDS Daci_1576 NC_010002.1 1766809 1773222 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: vei:Veis_3017 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1766809..1773222 Delftia acidovorans SPH-1 5747133 YP_001562606.1 CDS Daci_1577 NC_010002.1 1773286 1774767 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: aav:Aave_0906 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase complement(1773286..1774767) Delftia acidovorans SPH-1 5747134 YP_001562607.1 CDS Daci_1578 NC_010002.1 1774792 1775391 D PFAM: protein of unknown function DUF179; KEGG: ajs:Ajs_3573 protein of unknown function DUF179; hypothetical protein 1774792..1775391 Delftia acidovorans SPH-1 5747135 YP_001562608.1 CDS Daci_1579 NC_010002.1 1775388 1775846 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1775388..1775846 Delftia acidovorans SPH-1 5747136 YP_001562609.1 CDS Daci_1580 NC_010002.1 1775843 1776361 D PFAM: phosphoribosyltransferase; KEGG: aav:Aave_0909 phosphoribosyltransferase; phosphoribosyltransferase 1775843..1776361 Delftia acidovorans SPH-1 5747137 YP_001562610.1 CDS pyrB NC_010002.1 1776364 1777326 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1776364..1777326 Delftia acidovorans SPH-1 5747138 YP_001562611.1 CDS Daci_1582 NC_010002.1 1777571 1778866 D PFAM: amidohydrolase; KEGG: ajs:Ajs_3569 amidohydrolase; amidohydrolase 1777571..1778866 Delftia acidovorans SPH-1 5747139 YP_001562612.1 CDS Daci_1583 NC_010002.1 1778869 1779618 D PFAM: phospholipid/glycerol acyltransferase; KEGG: vei:Veis_1512 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1778869..1779618 Delftia acidovorans SPH-1 5747140 YP_001562613.1 CDS Daci_1584 NC_010002.1 1779633 1780109 D PFAM: GCN5-related N-acetyltransferase; KEGG: reh:H16_A2522 hypothetical protein; N-acetyltransferase GCN5 1779633..1780109 Delftia acidovorans SPH-1 5747141 YP_001562614.1 CDS Daci_1585 NC_010002.1 1780136 1780522 R KEGG: rme:Rmet_2261 putative lipoprotein; putative lipoprotein complement(1780136..1780522) Delftia acidovorans SPH-1 5747142 YP_001562615.1 CDS Daci_1586 NC_010002.1 1780560 1781192 R KEGG: aav:Aave_2928 hypothetical protein; hypothetical protein complement(1780560..1781192) Delftia acidovorans SPH-1 5747143 YP_001562616.1 CDS Daci_1587 NC_010002.1 1781189 1782568 R PFAM: Stage II sporulation E family protein; KEGG: rme:Rmet_2259 serine phosphatase; protein serine/threonine phosphatase complement(1781189..1782568) Delftia acidovorans SPH-1 5747144 YP_001562617.1 CDS Daci_1588 NC_010002.1 1782666 1783826 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_0913 ABC transporter-related protein; ABC transporter-like protein complement(1782666..1783826) Delftia acidovorans SPH-1 5747145 YP_001562618.1 CDS Daci_1589 NC_010002.1 1783976 1785622 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_0914 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1783976..1785622 Delftia acidovorans SPH-1 5747146 YP_001562619.1 CDS Daci_1590 NC_010002.1 1785680 1786588 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1362 transcriptional regulator, LysR-family; LysR family transcriptional regulator 1785680..1786588 Delftia acidovorans SPH-1 5747147 YP_001562620.1 CDS Daci_1591 NC_010002.1 1786700 1788085 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 1786700..1788085 Delftia acidovorans SPH-1 5747148 YP_001562621.1 CDS Daci_1592 NC_010002.1 1788292 1789608 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rme:Rmet_3725 uracil-xanthine permease; xanthine permease 1788292..1789608 Delftia acidovorans SPH-1 5747149 YP_001562622.1 CDS Daci_1593 NC_010002.1 1789580 1790008 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: ajs:Ajs_3564 arsenate reductase; arsenate reductase 1789580..1790008 Delftia acidovorans SPH-1 5747150 YP_001562623.1 CDS Daci_1594 NC_010002.1 1790104 1791666 D KEGG: aav:Aave_3965 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1790104..1791666 Delftia acidovorans SPH-1 5747151 YP_001562624.1 CDS Daci_1595 NC_010002.1 1791975 1793498 D PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0369 ABC transporter related; ABC transporter-like protein 1791975..1793498 Delftia acidovorans SPH-1 5747152 YP_001562625.1 CDS Daci_1596 NC_010002.1 1793535 1793939 D KEGG: pna:Pnap_0368 hypothetical protein; hypothetical protein 1793535..1793939 Delftia acidovorans SPH-1 5747153 YP_001562626.1 CDS Daci_1597 NC_010002.1 1794000 1794674 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_3964 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1794000..1794674 Delftia acidovorans SPH-1 5747154 YP_001562627.1 CDS Daci_1598 NC_010002.1 1794671 1796134 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; histidine kinase 1794671..1796134 Delftia acidovorans SPH-1 5747155 YP_001562628.1 CDS Daci_1599 NC_010002.1 1796305 1797336 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aha:AHA_2752 GGDEF domain protein; GAF sensor-containing diguanylate cyclase 1796305..1797336 Delftia acidovorans SPH-1 5747156 YP_001562629.1 CDS Daci_1600 NC_010002.1 1797432 1799039 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_2152 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1797432..1799039) Delftia acidovorans SPH-1 5747157 YP_001562630.1 CDS Daci_1601 NC_010002.1 1799470 1800060 D KEGG: bch:Bcen2424_2187 hypothetical protein; hypothetical protein 1799470..1800060 Delftia acidovorans SPH-1 5747158 YP_001562631.1 CDS Daci_1602 NC_010002.1 1800083 1800895 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein; IclR family transcriptional regulator complement(1800083..1800895) Delftia acidovorans SPH-1 5747159 YP_001562632.1 CDS Daci_1603 NC_010002.1 1800913 1801926 D PFAM: dihydrodipicolinate synthetase; KEGG: bbr:BB3070 probable dihydrodipicolinate synthase; dihydrodipicolinate synthetase 1800913..1801926 Delftia acidovorans SPH-1 5747160 YP_001562633.1 CDS Daci_1604 NC_010002.1 1801987 1802991 D PFAM: conserved hypothetical protein; KEGG: bbr:BB3069 hypothetical protein; hypothetical protein 1801987..1802991 Delftia acidovorans SPH-1 5747161 YP_001562634.1 CDS Daci_1605 NC_010002.1 1803028 1803252 R hypothetical protein complement(1803028..1803252) Delftia acidovorans SPH-1 5747162 YP_001562635.1 CDS Daci_1606 NC_010002.1 1803274 1803963 R PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_B2348 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(1803274..1803963) Delftia acidovorans SPH-1 5747163 YP_001562636.1 CDS Daci_1607 NC_010002.1 1803977 1804657 R hypothetical protein complement(1803977..1804657) Delftia acidovorans SPH-1 5747164 YP_001562637.1 CDS Daci_1608 NC_010002.1 1804780 1805337 D PFAM: helix-turn-helix domain protein; KEGG: cvi:CV_2150 probable transcriptional regulator; XRE family transcriptional regulator 1804780..1805337 Delftia acidovorans SPH-1 5747165 YP_001562638.1 CDS Daci_1609 NC_010002.1 1805357 1806115 R KEGG: sil:SPO1406 hypothetical protein; hypothetical protein complement(1805357..1806115) Delftia acidovorans SPH-1 5747166 YP_001562639.1 CDS Daci_1610 NC_010002.1 1806125 1807606 R PFAM: tyrosinase; KEGG: sil:SPO1405 tyrosinase domain protein; tyrosinase complement(1806125..1807606) Delftia acidovorans SPH-1 5747167 YP_001562640.1 CDS Daci_1611 NC_010002.1 1808094 1809221 R PFAM: integrase family protein; KEGG: bte:BTH_II0623 Bbp50; integrase family protein complement(1808094..1809221) Delftia acidovorans SPH-1 5747168 YP_001562641.1 CDS Daci_1612 NC_010002.1 1809439 1809981 R hypothetical protein complement(1809439..1809981) Delftia acidovorans SPH-1 5747169 YP_001562642.1 CDS Daci_1613 NC_010002.1 1809978 1810997 R KEGG: spe:Spro_2032 hypothetical protein; hypothetical protein complement(1809978..1810997) Delftia acidovorans SPH-1 5747170 YP_001562643.1 CDS Daci_1614 NC_010002.1 1811291 1812109 R hypothetical protein complement(1811291..1812109) Delftia acidovorans SPH-1 5747171 YP_001562644.1 CDS Daci_1615 NC_010002.1 1812106 1812921 R hypothetical protein complement(1812106..1812921) Delftia acidovorans SPH-1 5747172 YP_001562645.1 CDS Daci_1616 NC_010002.1 1813003 1814121 R KEGG: stm:STM0902 hypothetical protein; hypothetical protein complement(1813003..1814121) Delftia acidovorans SPH-1 5747173 YP_001562646.1 CDS Daci_1617 NC_010002.1 1814428 1814709 D hypothetical protein 1814428..1814709 Delftia acidovorans SPH-1 5747174 YP_001562647.1 CDS Daci_1618 NC_010002.1 1814930 1815349 R hypothetical protein complement(1814930..1815349) Delftia acidovorans SPH-1 5747175 YP_001562648.1 CDS Daci_1619 NC_010002.1 1815479 1816192 R PFAM: peptidase S24 and S26 domain protein; KEGG: asa:ASA_3870 prophage transcriptional regulator; putative phage repressor complement(1815479..1816192) Delftia acidovorans SPH-1 5747176 YP_001562649.1 CDS Daci_1620 NC_010002.1 1816275 1816529 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1816275..1816529 Delftia acidovorans SPH-1 5747177 YP_001562650.1 CDS Daci_1621 NC_010002.1 1816855 1817340 D KEGG: aav:Aave_1756 transcriptional regulator CII, putative; transcriptional regulator CII 1816855..1817340 Delftia acidovorans SPH-1 5747178 YP_001562651.1 CDS Daci_1622 NC_010002.1 1817510 1818424 D KEGG: smd:Smed_1667 MT-A70 family protein; hypothetical protein 1817510..1818424 Delftia acidovorans SPH-1 5747179 YP_001562652.1 CDS Daci_1623 NC_010002.1 1818475 1819983 D PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase; helicase domain-containing protein 1818475..1819983 Delftia acidovorans SPH-1 5747180 YP_001562653.1 CDS Daci_1624 NC_010002.1 1819980 1820909 D PFAM: Primase 2; KEGG: bpl:BURPS1106A_0113 hypothetical protein; primase 2 1819980..1820909 Delftia acidovorans SPH-1 5747181 YP_001562654.1 CDS Daci_1625 NC_010002.1 1821431 1822108 D hypothetical protein 1821431..1822108 Delftia acidovorans SPH-1 5747182 YP_001562655.1 CDS Daci_1626 NC_010002.1 1822258 1822563 R hypothetical protein complement(1822258..1822563) Delftia acidovorans SPH-1 5747183 YP_001562656.1 CDS Daci_1627 NC_010002.1 1823020 1823781 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsh:Rsph17029_3313 HNH endonuclease; HNH endonuclease 1823020..1823781 Delftia acidovorans SPH-1 5747184 YP_001562657.1 CDS Daci_1628 NC_010002.1 1823793 1824113 D PFAM: transcriptional activator Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein; transcriptional activator Ogr/delta 1823793..1824113 Delftia acidovorans SPH-1 5747185 YP_001562658.1 CDS Daci_1629 NC_010002.1 1824355 1824615 D hypothetical protein 1824355..1824615 Delftia acidovorans SPH-1 5747186 YP_001562659.1 CDS Daci_1630 NC_010002.1 1824841 1825278 D KEGG: bbr:BB1691 phage-related hypothetical protein; hypothetical protein 1824841..1825278 Delftia acidovorans SPH-1 5747187 YP_001562660.1 CDS Daci_1631 NC_010002.1 1825226 1826986 D PFAM: Terminase; KEGG: bbr:BB1692 terminase; terminase 1825226..1826986 Delftia acidovorans SPH-1 5747188 YP_001562661.1 CDS Daci_1632 NC_010002.1 1826983 1828272 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein; HK97 family phage portal protein 1826983..1828272 Delftia acidovorans SPH-1 5747189 YP_001562662.1 CDS Daci_1633 NC_010002.1 1828276 1829139 D PFAM: peptidase S14 ClpP; KEGG: bbr:BB1694 phage-related Clp protease; peptidase S14 ClpP 1828276..1829139 Delftia acidovorans SPH-1 5747190 YP_001562663.1 CDS Daci_1634 NC_010002.1 1829149 1830366 D KEGG: bbr:BB1695 major head protein; major head protein 1829149..1830366 Delftia acidovorans SPH-1 5747191 YP_001562664.1 CDS Daci_1636 NC_010002.1 1831137 1831616 D KEGG: ppu:PP_1569 hypothetical protein; hypothetical protein 1831137..1831616 Delftia acidovorans SPH-1 5747193 YP_001562665.1 CDS Daci_1637 NC_010002.1 1831645 1831956 D TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein; phage head-tail adaptor 1831645..1831956 Delftia acidovorans SPH-1 5747194 YP_001562666.1 CDS Daci_1638 NC_010002.1 1831949 1832407 D TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: asu:Asuc_1243 phage protein, HK97 GP10 family; HK97 family phage protein 1831949..1832407 Delftia acidovorans SPH-1 5747195 YP_001562667.1 CDS Daci_1639 NC_010002.1 1832404 1832787 D hypothetical protein 1832404..1832787 Delftia acidovorans SPH-1 5747196 YP_001562668.1 CDS Daci_1640 NC_010002.1 1832854 1833507 D KEGG: asu:Asuc_1245 hypothetical protein; hypothetical protein 1832854..1833507 Delftia acidovorans SPH-1 5747197 YP_001562669.1 CDS Daci_1641 NC_010002.1 1833504 1833866 D hypothetical protein 1833504..1833866 Delftia acidovorans SPH-1 5747198 YP_001562670.1 CDS Daci_1642 NC_010002.1 1833923 1834174 D hypothetical protein 1833923..1834174 Delftia acidovorans SPH-1 5747199 YP_001562671.1 CDS Daci_1643 NC_010002.1 1834176 1836650 D KEGG: mms:mma_2779 uncharacterized conserved protein (possible phage related tail length tape measure protein); hypothetical protein 1834176..1836650 Delftia acidovorans SPH-1 5747200 YP_001562672.1 CDS Daci_1644 NC_010002.1 1836654 1837268 D KEGG: rsq:Rsph17025_3709 glycoside hydrolase, family 24; hypothetical protein 1836654..1837268 Delftia acidovorans SPH-1 5747201 YP_001562673.1 CDS Daci_1645 NC_010002.1 1837270 1838202 D PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein; hypothetical protein 1837270..1838202 Delftia acidovorans SPH-1 5747202 YP_001562674.1 CDS Daci_1646 NC_010002.1 1838199 1838609 D PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60; NLP/P60 protein 1838199..1838609 Delftia acidovorans SPH-1 5747203 YP_001562675.1 CDS Daci_1647 NC_010002.1 1838957 1842331 D KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein; hypothetical protein 1838957..1842331 Delftia acidovorans SPH-1 5747204 YP_001562676.1 CDS Daci_1648 NC_010002.1 1842328 1842999 D KEGG: pmy:Pmen_3953 hypothetical protein; hypothetical protein 1842328..1842999 Delftia acidovorans SPH-1 5747205 YP_001562677.1 CDS Daci_1649 NC_010002.1 1842996 1843703 D hypothetical protein 1842996..1843703 Delftia acidovorans SPH-1 5747206 YP_001562678.1 CDS Daci_1650 NC_010002.1 1843773 1844168 D hypothetical protein 1843773..1844168 Delftia acidovorans SPH-1 5747207 YP_001562679.1 CDS Daci_1651 NC_010002.1 1844195 1844464 D hypothetical protein 1844195..1844464 Delftia acidovorans SPH-1 5747208 YP_001562680.1 CDS Daci_1652 NC_010002.1 1844461 1844937 D PFAM: protein of unknown function DUF847; KEGG: nmc:NMC1002 hypothetical protein; hypothetical protein 1844461..1844937 Delftia acidovorans SPH-1 5747209 YP_001562681.1 CDS Daci_1653 NC_010002.1 1844934 1845299 D KEGG: aav:Aave_1790 hypothetical protein; hypothetical protein 1844934..1845299 Delftia acidovorans SPH-1 5747210 YP_001562682.1 CDS Daci_1654 NC_010002.1 1845296 1845580 D KEGG: aav:Aave_1637 hypothetical protein; hypothetical protein 1845296..1845580 Delftia acidovorans SPH-1 5747211 YP_001562683.1 CDS Daci_1655 NC_010002.1 1845577 1845855 D KEGG: ajs:Ajs_2504 hypothetical protein; hypothetical protein 1845577..1845855 Delftia acidovorans SPH-1 5747212 YP_001562684.1 CDS Daci_1656 NC_010002.1 1845852 1846121 D KEGG: aav:Aave_2385 hypothetical protein; hypothetical protein 1845852..1846121 Delftia acidovorans SPH-1 5747213 YP_001562685.1 CDS Daci_1657 NC_010002.1 1846435 1850766 R PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 protein of unknown function DUF490; hypothetical protein complement(1846435..1850766) Delftia acidovorans SPH-1 5747215 YP_001562686.1 CDS Daci_1658 NC_010002.1 1850769 1852691 R PFAM: surface antigen (D15); KEGG: aav:Aave_3955 surface antigen (D15); surface antigen (D15) complement(1850769..1852691) Delftia acidovorans SPH-1 5747216 YP_001562687.1 CDS Daci_1659 NC_010002.1 1852696 1853883 R KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein complement(1852696..1853883) Delftia acidovorans SPH-1 5747217 YP_001562688.1 CDS Daci_1660 NC_010002.1 1853915 1854625 R KEGG: ajs:Ajs_3558 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1853915..1854625) Delftia acidovorans SPH-1 5747218 YP_001562689.1 CDS Daci_1661 NC_010002.1 1854637 1855491 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_3556 AAA ATPase, central domain protein; ATPase complement(1854637..1855491) Delftia acidovorans SPH-1 5747219 YP_001562690.1 CDS Daci_1662 NC_010002.1 1855608 1856282 D PFAM: cytochrome c class I; KEGG: ajs:Ajs_3555 cytochrome c, class I; class I cytochrome c 1855608..1856282 Delftia acidovorans SPH-1 5747220 YP_001562691.1 CDS Daci_1663 NC_010002.1 1856375 1856833 R PFAM: Domain of unknown function DUF1841; KEGG: aav:Aave_3950 hypothetical protein; hypothetical protein complement(1856375..1856833) Delftia acidovorans SPH-1 5747221 YP_001562692.1 CDS Daci_1664 NC_010002.1 1856912 1857511 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kpn:KPN_03412 hypothetical protein; short chain dehydrogenase complement(1856912..1857511) Delftia acidovorans SPH-1 5747222 YP_001562693.1 CDS Daci_1665 NC_010002.1 1857618 1858508 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc3332 probable transcription regulator protein; LysR family transcriptional regulator 1857618..1858508 Delftia acidovorans SPH-1 5747223 YP_001562694.1 CDS Daci_1666 NC_010002.1 1858519 1860402 R transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC complement(1858519..1860402) Delftia acidovorans SPH-1 5747224 YP_001562695.1 CDS Daci_1667 NC_010002.1 1860700 1861329 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1860700..1861329 Delftia acidovorans SPH-1 5747225 YP_001562696.1 CDS Daci_1668 NC_010002.1 1861551 1862135 D PFAM: MaoC domain protein dehydratase; KEGG: aav:Aave_3913 MaoC domain protein dehydratase; dehydratase 1861551..1862135 Delftia acidovorans SPH-1 5747226 YP_001562697.1 CDS Daci_1669 NC_010002.1 1862290 1862595 R KEGG: aav:Aave_3912 hypothetical protein; hypothetical protein complement(1862290..1862595) Delftia acidovorans SPH-1 5747227 YP_001562698.1 CDS Daci_1670 NC_010002.1 1862779 1863276 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ajs:Ajs_3541 tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase complement(1862779..1863276) Delftia acidovorans SPH-1 5747228 YP_001562699.1 CDS Daci_1671 NC_010002.1 1863329 1864063 R KEGG: ajs:Ajs_3540 ComF family protein; ComF family protein complement(1863329..1864063) Delftia acidovorans SPH-1 5747229 YP_001562700.1 CDS Daci_1672 NC_010002.1 1864153 1865055 D KEGG: aav:Aave_3908 biotin synthesis protein BioC; biotin synthesis protein BioC 1864153..1865055 Delftia acidovorans SPH-1 5747230 YP_001562701.1 CDS Daci_1673 NC_010002.1 1865352 1865642 D hypothetical protein 1865352..1865642 Delftia acidovorans SPH-1 5747231 YP_001562702.1 CDS Daci_1674 NC_010002.1 1865759 1866901 D TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: ajs:Ajs_3537 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 1865759..1866901 Delftia acidovorans SPH-1 5747232 YP_001562703.1 CDS Daci_1675 NC_010002.1 1866937 1868607 D KEGG: aav:Aave_3906 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 1866937..1868607 Delftia acidovorans SPH-1 5747233 YP_001562704.1 CDS Daci_1676 NC_010002.1 1868631 1868738 D hypothetical protein 1868631..1868738 Delftia acidovorans SPH-1 5747234 YP_001562705.1 CDS Daci_1677 NC_010002.1 1868790 1869383 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 1868790..1869383 Delftia acidovorans SPH-1 5747235 YP_001562706.1 CDS Daci_1678 NC_010002.1 1869380 1869592 D KEGG: aav:Aave_3904 putative transmembrane protein; putative transmembrane protein 1869380..1869592 Delftia acidovorans SPH-1 5747236 YP_001562707.1 CDS Daci_1679 NC_010002.1 1869663 1870544 D PFAM: cytochrome c oxidase subunit III; KEGG: ajs:Ajs_3532 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 1869663..1870544 Delftia acidovorans SPH-1 5747237 YP_001562708.1 CDS Daci_1680 NC_010002.1 1870620 1870862 R KEGG: ajs:Ajs_3531 putative transmembrane protein; putative transmembrane protein complement(1870620..1870862) Delftia acidovorans SPH-1 5747238 YP_001562709.1 CDS Daci_1681 NC_010002.1 1870892 1871665 D KEGG: ajs:Ajs_3530 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase 1870892..1871665 Delftia acidovorans SPH-1 5747239 YP_001562710.1 CDS Daci_1682 NC_010002.1 1871679 1872341 D KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein 1871679..1872341 Delftia acidovorans SPH-1 5747240 YP_001562711.1 CDS Daci_1683 NC_010002.1 1872551 1873165 D PFAM: electron transport protein SCO1/SenC; KEGG: aav:Aave_3898 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 1872551..1873165 Delftia acidovorans SPH-1 5747241 YP_001562712.1 CDS Daci_1684 NC_010002.1 1873327 1874904 D TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: yps:YPTB2424 putative methyl-accepting chemotaxis protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 1873327..1874904 Delftia acidovorans SPH-1 5747242 YP_001562713.1 CDS Daci_1685 NC_010002.1 1874901 1876658 D KEGG: ajs:Ajs_3525 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1874901..1876658 Delftia acidovorans SPH-1 5747243 YP_001562714.1 CDS Daci_1686 NC_010002.1 1876687 1876983 R TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family; putative transcriptional regulator complement(1876687..1876983) Delftia acidovorans SPH-1 5747244 YP_001562715.1 CDS Daci_1687 NC_010002.1 1876980 1877276 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: neu:NE1356 hypothetical protein; addiction module killer protein complement(1876980..1877276) Delftia acidovorans SPH-1 5747245 YP_001562716.1 CDS Daci_1688 NC_010002.1 1877324 1878055 R KEGG: ajs:Ajs_3524 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(1877324..1878055) Delftia acidovorans SPH-1 5747246 YP_001562717.1 CDS Daci_1689 NC_010002.1 1878243 1879220 R KEGG: bbr:BB0107 hypothetical protein; hypothetical protein complement(1878243..1879220) Delftia acidovorans SPH-1 5747247 YP_001562718.1 CDS Daci_1690 NC_010002.1 1879220 1881172 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1879220..1881172) Delftia acidovorans SPH-1 5747248 YP_001562719.1 CDS Daci_1691 NC_010002.1 1881188 1882123 R PFAM: fatty acid desaturase; KEGG: bpe:BP3207 putative fatty acid desaturase; fatty acid desaturase complement(1881188..1882123) Delftia acidovorans SPH-1 5747249 YP_001562720.1 CDS Daci_1692 NC_010002.1 1882120 1882866 R PFAM: fatty acid hydroxylase; KEGG: bbr:BB0103 putative desaturase; fatty acid hydroxylase complement(1882120..1882866) Delftia acidovorans SPH-1 5747250 YP_001562721.1 CDS Daci_1693 NC_010002.1 1882886 1883911 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3523 uncharacterized protein UPF0065; hypothetical protein complement(1882886..1883911) Delftia acidovorans SPH-1 5747251 YP_001562722.1 CDS Daci_1694 NC_010002.1 1883976 1884920 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: aav:Aave_3894 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma 32 subunit RpoH complement(1883976..1884920) Delftia acidovorans SPH-1 5747252 YP_001562723.1 CDS Daci_1695 NC_010002.1 1886229 1886705 R KEGG: rfr:Rfer_3045 hypothetical protein; hypothetical protein complement(1886229..1886705) Delftia acidovorans SPH-1 5747253 YP_001562724.1 CDS Daci_1696 NC_010002.1 1887071 1887502 R hypothetical protein complement(1887071..1887502) Delftia acidovorans SPH-1 5747254 YP_001562725.1 CDS Daci_1697 NC_010002.1 1887686 1888126 D SMART: helix-turn-helix domain protein; KEGG: vei:Veis_0005 mobile mystery protein A; helix-turn-helix domain-containing protein 1887686..1888126 Delftia acidovorans SPH-1 5747255 YP_001562726.1 CDS Daci_1698 NC_010002.1 1888547 1889503 R KEGG: ret:RHE_CH00233 hypothetical protein; hypothetical protein complement(1888547..1889503) Delftia acidovorans SPH-1 5747256 YP_001562727.1 CDS Daci_1699 NC_010002.1 1889820 1890392 R hypothetical protein complement(1889820..1890392) Delftia acidovorans SPH-1 5747257 YP_001562728.1 CDS Daci_1700 NC_010002.1 1890487 1890957 R PFAM: helix-turn-helix domain protein; KEGG: ecs:ECs2620 putative transcriptional regulator; XRE family transcriptional regulator complement(1890487..1890957) Delftia acidovorans SPH-1 5747258 YP_001562729.1 CDS Daci_1701 NC_010002.1 1890992 1891282 D KEGG: nha:Nham_1614 hypothetical protein; hypothetical protein 1890992..1891282 Delftia acidovorans SPH-1 5747259 YP_001562730.1 CDS Daci_1702 NC_010002.1 1892059 1894011 D KEGG: bch:Bcen2424_5218 integrase, catalytic region; hypothetical protein 1892059..1894011 Delftia acidovorans SPH-1 5747260 YP_001562731.1 CDS Daci_1703 NC_010002.1 1894014 1894982 D KEGG: ppf:Pput_0007 AAA ATPase; hypothetical protein 1894014..1894982 Delftia acidovorans SPH-1 5747261 YP_001562732.1 CDS Daci_1704 NC_010002.1 1895590 1895946 D hypothetical protein 1895590..1895946 Delftia acidovorans SPH-1 5747262 YP_001562733.1 CDS Daci_1705 NC_010002.1 1896129 1896710 D KEGG: bch:Bcen2424_5215 hypothetical protein; hypothetical protein 1896129..1896710 Delftia acidovorans SPH-1 5747263 YP_001562734.1 CDS Daci_1706 NC_010002.1 1897162 1897746 D KEGG: pna:Pnap_4834 hypothetical protein; hypothetical protein 1897162..1897746 Delftia acidovorans SPH-1 5747264 YP_001562735.1 CDS Daci_1707 NC_010002.1 1898981 1899466 D KEGG: ajs:Ajs_1875 hypothetical protein; hypothetical protein 1898981..1899466 Delftia acidovorans SPH-1 5747265 YP_001562736.1 CDS Daci_1708 NC_010002.1 1899744 1900880 D KEGG: sty:HCM2.0093c hypothetical protein; hypothetical protein 1899744..1900880 Delftia acidovorans SPH-1 5747266 YP_001562737.1 CDS Daci_1709 NC_010002.1 1900992 1901318 D KEGG: nha:Nham_4496 hypothetical protein; hypothetical protein 1900992..1901318 Delftia acidovorans SPH-1 5747267 YP_001562738.1 CDS Daci_1710 NC_010002.1 1901705 1901986 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(1901705..1901986) Delftia acidovorans SPH-1 5747268 YP_001562739.1 CDS Daci_1711 NC_010002.1 1902189 1903844 R PFAM: sulfatase; KEGG: aav:Aave_4610 sulfatase; sulfatase complement(1902189..1903844) Delftia acidovorans SPH-1 5747269 YP_001562740.1 CDS Daci_1712 NC_010002.1 1903881 1905269 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1630 putative two-component sensor; heavy metal sensor signal transduction histidine kinase complement(1903881..1905269) Delftia acidovorans SPH-1 5747270 YP_001562741.1 CDS Daci_1713 NC_010002.1 1905266 1905949 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mpt:Mpe_A1629 two-component response regulator; two component heavy metal response transcriptional regulator complement(1905266..1905949) Delftia acidovorans SPH-1 5747271 YP_001562742.1 CDS Daci_1714 NC_010002.1 1906105 1907436 D PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 probable cobalt-zinc-cadmium outer membrane resistance protein; outer membrane efflux protein 1906105..1907436 Delftia acidovorans SPH-1 5747272 YP_001562743.1 CDS Daci_1715 NC_010002.1 1907453 1908823 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mms:mma_1793 cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 1907453..1908823 Delftia acidovorans SPH-1 5747273 YP_001562744.1 CDS Daci_1716 NC_010002.1 1908844 1912032 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1849 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 1908844..1912032 Delftia acidovorans SPH-1 5747274 YP_001562745.1 CDS Daci_1717 NC_010002.1 1912221 1912571 D KEGG: ajs:Ajs_2727 hypothetical protein; hypothetical protein 1912221..1912571 Delftia acidovorans SPH-1 5747275 YP_001562746.1 CDS Daci_1718 NC_010002.1 1912670 1914436 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vei:Veis_4349 sulfatase; sulfatase 1912670..1914436 Delftia acidovorans SPH-1 5747276 YP_001562747.1 CDS Daci_1719 NC_010002.1 1914538 1914927 D TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: mms:mma_1763 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 1914538..1914927 Delftia acidovorans SPH-1 5747277 YP_001562748.1 CDS Daci_1720 NC_010002.1 1914956 1915231 D KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein 1914956..1915231 Delftia acidovorans SPH-1 5747278 YP_001562749.1 CDS Daci_1721 NC_010002.1 1915304 1917772 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase; heavy metal translocating P-type ATPase 1915304..1917772 Delftia acidovorans SPH-1 5747279 YP_001562750.1 CDS Daci_1722 NC_010002.1 1917869 1918630 D KEGG: xcb:XC_3128 hypothetical protein; hypothetical protein 1917869..1918630 Delftia acidovorans SPH-1 5747280 YP_001562751.1 CDS Daci_1723 NC_010002.1 1918605 1919018 D PFAM: diacylglycerol kinase; KEGG: aav:Aave_3117 diacylglycerol kinase; diacylglycerol kinase 1918605..1919018 Delftia acidovorans SPH-1 5747281 YP_001562752.1 CDS Daci_1724 NC_010002.1 1919063 1919389 R hypothetical protein complement(1919063..1919389) Delftia acidovorans SPH-1 5747282 YP_001562753.1 CDS Daci_1725 NC_010002.1 1919523 1920569 R KEGG: vei:Veis_4644 porin, gram-negative type; porin complement(1919523..1920569) Delftia acidovorans SPH-1 5747283 YP_001562754.1 CDS Daci_1726 NC_010002.1 1921980 1922318 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(1921980..1922318) Delftia acidovorans SPH-1 5747284 YP_001562755.1 CDS Daci_1727 NC_010002.1 1922378 1922803 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(1922378..1922803) Delftia acidovorans SPH-1 5747285 YP_001562756.1 CDS Daci_1728 NC_010002.1 1922898 1923305 D hypothetical protein 1922898..1923305 Delftia acidovorans SPH-1 5747286 YP_001562757.1 CDS Daci_1729 NC_010002.1 1923320 1924051 D PFAM: transcriptional regulator domain protein; KEGG: bbr:BB4471 two-component response regulator; winged helix family two component response transcriptional regulator 1923320..1924051 Delftia acidovorans SPH-1 5747287 YP_001562758.1 CDS Daci_1730 NC_010002.1 1924184 1924567 R KEGG: aav:Aave_0797 chromate transporter, chromate ion transporter (CHR) family; hypothetical protein complement(1924184..1924567) Delftia acidovorans SPH-1 5747288 YP_001562759.1 CDS Daci_1731 NC_010002.1 1924663 1925076 R KEGG: psb:Psyr_1485 hypothetical protein; hypothetical protein complement(1924663..1925076) Delftia acidovorans SPH-1 5747289 YP_001562760.1 CDS Daci_1732 NC_010002.1 1925073 1926368 R PFAM: Chloride channel core; KEGG: psb:Psyr_1486 Cl-channel, voltage gated; chloride channel core complement(1925073..1926368) Delftia acidovorans SPH-1 5747290 YP_001562761.1 CDS Daci_1733 NC_010002.1 1926719 1926913 D KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein 1926719..1926913 Delftia acidovorans SPH-1 5747291 YP_001562762.1 CDS Daci_1734 NC_010002.1 1927084 1927506 D KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein 1927084..1927506 Delftia acidovorans SPH-1 5747292 YP_001562763.1 CDS Daci_1735 NC_010002.1 1927503 1928957 D SMART: AAA ATPase; KEGG: xac:XAC2215 hypothetical protein; ATPase AAA 1927503..1928957 Delftia acidovorans SPH-1 5747293 YP_001562764.1 CDS Daci_1736 NC_010002.1 1929097 1929798 D KEGG: xac:XAC2214 hypothetical protein; hypothetical protein 1929097..1929798 Delftia acidovorans SPH-1 5747294 YP_001562765.1 CDS Daci_1737 NC_010002.1 1930387 1931439 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: reu:Reut_A1523 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1930387..1931439) Delftia acidovorans SPH-1 5747295 YP_001562766.1 CDS Daci_1738 NC_010002.1 1931589 1931933 D KEGG: pol:Bpro_2505 hypothetical protein; hypothetical protein 1931589..1931933 Delftia acidovorans SPH-1 5747296 YP_001562767.1 CDS Daci_1739 NC_010002.1 1932026 1933228 D PFAM: outer membrane efflux protein; KEGG: azo:azo0224 hypothetical outer membrane efflux protein; outer membrane efflux protein 1932026..1933228 Delftia acidovorans SPH-1 5747297 YP_001562768.1 CDS Daci_1740 NC_010002.1 1933225 1933809 D KEGG: mms:mma_3051 hypothetical protein; hypothetical protein 1933225..1933809 Delftia acidovorans SPH-1 5747298 YP_001562769.1 CDS Daci_1741 NC_010002.1 1933806 1934915 D KEGG: azo:azo0226 conserved hypothetical secreted protein; hypothetical protein 1933806..1934915 Delftia acidovorans SPH-1 5747299 YP_001562770.1 CDS Daci_1742 NC_010002.1 1934933 1938064 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: azo:azo0227 putative cation efflux system protein; CzcA family heavy metal efflux protein 1934933..1938064 Delftia acidovorans SPH-1 5747300 YP_001562771.1 CDS Daci_1743 NC_010002.1 1938131 1938505 D KEGG: azo:azo0228 hypothetical protein; hypothetical protein 1938131..1938505 Delftia acidovorans SPH-1 5747301 YP_001562772.1 CDS Daci_1744 NC_010002.1 1938874 1939359 R PFAM: protein of unknown function DUF437; KEGG: rme:Rmet_3367 transcriptional regulator; hypothetical protein complement(1938874..1939359) Delftia acidovorans SPH-1 5747302 YP_001562773.1 CDS Daci_1745 NC_010002.1 1939343 1941514 R PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3368 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1939343..1941514) Delftia acidovorans SPH-1 5747303 YP_001562774.1 CDS Daci_1746 NC_010002.1 1942457 1942693 D hypothetical protein 1942457..1942693 Delftia acidovorans SPH-1 5747304 YP_001562775.1 CDS Daci_1747 NC_010002.1 1942764 1943264 D KEGG: xom:XOO_2155 hypothetical protein; hypothetical protein 1942764..1943264 Delftia acidovorans SPH-1 5747305 YP_001562776.1 CDS Daci_1748 NC_010002.1 1943613 1943852 R KEGG: pol:Bpro_5204 integrase, catalytic region; integrase catalytic subunit complement(1943613..1943852) Delftia acidovorans SPH-1 5747306 YP_001562777.1 CDS Daci_1750 NC_010002.1 1944074 1944274 R KEGG: ajs:Ajs_3905 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1944074..1944274) Delftia acidovorans SPH-1 5747308 YP_001562778.1 CDS Daci_1751 NC_010002.1 1944652 1946502 R KEGG: yen:YE0990 AYP/GTP-binding protein; AYP/GTP-binding protein complement(1944652..1946502) Delftia acidovorans SPH-1 5747309 YP_001562779.1 CDS Daci_1752 NC_010002.1 1946499 1946954 R KEGG: yen:YE0991 hypothetical protein; hypothetical protein complement(1946499..1946954) Delftia acidovorans SPH-1 5747310 YP_001562780.1 CDS Daci_1753 NC_010002.1 1946951 1948228 R KEGG: yen:YE0992 hypothetical protein; hypothetical protein complement(1946951..1948228) Delftia acidovorans SPH-1 5747311 YP_001562781.1 CDS Daci_1754 NC_010002.1 1948429 1949589 D PFAM: Integrase catalytic region; KEGG: pfo:Pfl_2765 integrase, catalytic region; integrase catalytic subunit 1948429..1949589 Delftia acidovorans SPH-1 5747312 YP_001562782.1 CDS Daci_1755 NC_010002.1 1949763 1951898 R PFAM: helix-turn-helix domain protein; KEGG: bpd:BURPS668_3499 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1949763..1951898) Delftia acidovorans SPH-1 5747313 YP_001562783.1 CDS Daci_1756 NC_010002.1 1952247 1953035 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B4595 regulatory protein, IclR; IclR family transcriptional regulator complement(1952247..1953035) Delftia acidovorans SPH-1 5747314 YP_001562784.1 CDS Daci_1757 NC_010002.1 1953312 1954289 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1440 probable extra-cytoplasmic solute receptor; hypothetical protein 1953312..1954289 Delftia acidovorans SPH-1 5747315 YP_001562785.1 CDS Daci_1758 NC_010002.1 1954323 1955114 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1439 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase 1954323..1955114 Delftia acidovorans SPH-1 5747316 YP_001562786.1 CDS Daci_1759 NC_010002.1 1955119 1957221 D PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: reu:Reut_B4596 CoA-binding; CoA-binding domain-containing protein 1955119..1957221 Delftia acidovorans SPH-1 5747317 YP_001562787.1 CDS Daci_1760 NC_010002.1 1957293 1958630 D PFAM: MmgE/PrpD family protein; KEGG: reh:H16_B1436 2-methylcitrate dehydratase; MmgE/PrpD family protein 1957293..1958630 Delftia acidovorans SPH-1 5747318 YP_001562788.1 CDS Daci_1761 NC_010002.1 1958666 1960648 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1385 acetyl-coenzyme A synthetase; acetate--CoA ligase complement(1958666..1960648) Delftia acidovorans SPH-1 5747319 YP_001562789.1 CDS Daci_1762 NC_010002.1 1960755 1961666 R KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase; (acyl-carrier protein) S-malonyltransferase complement(1960755..1961666) Delftia acidovorans SPH-1 5747320 YP_001562790.1 CDS Daci_1763 NC_010002.1 1961663 1962523 R PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mpt:Mpe_A2891 triphosphoribosyl-dephospho-CoA synthase; triphosphoribosyl-dephospho-CoA synthase complement(1961663..1962523) Delftia acidovorans SPH-1 5747321 YP_001562791.1 CDS Daci_1764 NC_010002.1 1962520 1963233 R TIGRFAM: holo-ACP synthase, malonate decarboxylase-specific; KEGG: rfr:Rfer_1847 malonate decarboxylase; malonate decarboxylase-specific holo-ACP synthase complement(1962520..1963233) Delftia acidovorans SPH-1 5747322 YP_001562792.1 CDS Daci_1765 NC_010002.1 1963230 1963931 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: mpt:Mpe_A2892 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma complement(1963230..1963931) Delftia acidovorans SPH-1 5747323 YP_001562793.1 CDS Daci_1766 NC_010002.1 1963937 1964854 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(1963937..1964854) Delftia acidovorans SPH-1 5747324 YP_001562794.1 CDS Daci_1767 NC_010002.1 1964851 1965183 R TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: mpt:Mpe_A2894 delta subunit of malonate decarboxylase; malonate decarboxylase acyl carrier protein complement(1964851..1965183) Delftia acidovorans SPH-1 5747325 YP_001562795.1 CDS Daci_1768 NC_010002.1 1965194 1966876 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mpt:Mpe_A2895 alpha subunit of malonate decarboxylase; malonate decarboxylase subunit alpha complement(1965194..1966876) Delftia acidovorans SPH-1 5747326 YP_001562796.1 CDS Daci_1769 NC_010002.1 1966942 1968315 R PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: mpt:Mpe_A2896 dicarboxylate carrier protein; dicarboxylate carrier MatC domain-containing protein complement(1966942..1968315) Delftia acidovorans SPH-1 5747327 YP_001562797.1 CDS Daci_1770 NC_010002.1 1968483 1969397 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A2897 regulatory protein, LysR; LysR family transcriptional regulator complement(1968483..1969397) Delftia acidovorans SPH-1 5747328 YP_001562798.1 CDS Daci_1771 NC_010002.1 1969499 1970653 R PFAM: luciferase family protein; KEGG: bxe:Bxe_B1542 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase complement(1969499..1970653) Delftia acidovorans SPH-1 5747329 YP_001562799.1 CDS Daci_1772 NC_010002.1 1970650 1971810 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pap:PSPA7_2908 probable transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(1970650..1971810) Delftia acidovorans SPH-1 5747330 YP_001562800.1 CDS Daci_1773 NC_010002.1 1971820 1973001 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pap:PSPA7_2907 probable FMNH2-dependent monooxygenase; acyl-CoA dehydrogenase type 2 complement(1971820..1973001) Delftia acidovorans SPH-1 5747331 YP_001562801.1 CDS Daci_1774 NC_010002.1 1972998 1973627 R PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase; FMN reductase complement(1972998..1973627) Delftia acidovorans SPH-1 5747332 YP_001562802.1 CDS Daci_1775 NC_010002.1 1973899 1975209 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC0854 hypothetical protein; acyl-CoA dehydrogenase type 2 complement(1973899..1975209) Delftia acidovorans SPH-1 5747333 YP_001562803.1 CDS Daci_1776 NC_010002.1 1975362 1976726 R KEGG: bxe:Bxe_B1543 putative monooxygenase, DszA family; DszA family monooxygenase complement(1975362..1976726) Delftia acidovorans SPH-1 5747334 YP_001562804.1 CDS Daci_1777 NC_010002.1 1976752 1977576 R PFAM: NLPA lipoprotein; KEGG: ppu:PP_0221 ABC transporter, periplasmic binding protein, putative; NLPA lipoprotein complement(1976752..1977576) Delftia acidovorans SPH-1 5747335 YP_001562805.1 CDS Daci_1778 NC_010002.1 1977602 1978879 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_B1544 hypothetical protein; acyl-CoA dehydrogenase type 2 complement(1977602..1978879) Delftia acidovorans SPH-1 5747336 YP_001562806.1 CDS Daci_1779 NC_010002.1 1978885 1980177 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_2009 acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 complement(1978885..1980177) Delftia acidovorans SPH-1 5747337 YP_001562807.1 CDS Daci_1780 NC_010002.1 1980261 1980923 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2366 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1980261..1980923) Delftia acidovorans SPH-1 5747338 YP_001562808.1 CDS Daci_1781 NC_010002.1 1980895 1982088 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0241 D-methionine ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1980895..1982088) Delftia acidovorans SPH-1 5747339 YP_001562809.1 CDS Daci_1782 NC_010002.1 1982112 1982918 R PFAM: NLPA lipoprotein; KEGG: bur:Bcep18194_B0309 NlpA lipoprotein; NLPA lipoprotein complement(1982112..1982918) Delftia acidovorans SPH-1 5747340 YP_001562810.1 CDS Daci_1783 NC_010002.1 1982965 1983759 R PFAM: NLPA lipoprotein; KEGG: bam:Bamb_4689 NlpA lipoprotein; NLPA lipoprotein complement(1982965..1983759) Delftia acidovorans SPH-1 5747341 YP_001562811.1 CDS Daci_1784 NC_010002.1 1984048 1984620 R PFAM: regulatory protein MarR; KEGG: bpl:BURPS1106A_A2106 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1984048..1984620) Delftia acidovorans SPH-1 5747342 YP_001562812.1 CDS Daci_1785 NC_010002.1 1984762 1985220 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmn:BMA10247_A0721 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1984762..1985220 Delftia acidovorans SPH-1 5747343 YP_001562813.1 CDS Daci_1786 NC_010002.1 1985260 1985946 D KEGG: acr:Acry_2631 conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein; flavoprotein oxygenase DIM6/NTAB family-like protein 1985260..1985946 Delftia acidovorans SPH-1 5747344 YP_001562814.1 CDS Daci_1787 NC_010002.1 1985957 1986760 D KEGG: rha:RHA1_ro10137 2-oxopent-4-enoate hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1985957..1986760 Delftia acidovorans SPH-1 5747345 YP_001562815.1 CDS Daci_1788 NC_010002.1 1986899 1987669 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2567 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1986899..1987669 Delftia acidovorans SPH-1 5747346 YP_001562816.1 CDS Daci_1789 NC_010002.1 1987688 1988866 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1936 putative AraC-family transcriptional regulator; AraC family transcriptional regulator complement(1987688..1988866) Delftia acidovorans SPH-1 5747347 YP_001562817.1 CDS Daci_1790 NC_010002.1 1988888 1989679 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A3487 putative short chain dehydrogenase; short chain dehydrogenase 1988888..1989679 Delftia acidovorans SPH-1 5747348 YP_001562818.1 CDS Daci_1791 NC_010002.1 1989716 1991011 D KEGG: reh:H16_A3486 putative dehydrogenase/oxygenase subunit (flavoprotein); putative dehydrogenase/oxygenase subunit 1989716..1991011 Delftia acidovorans SPH-1 5747349 YP_001562819.1 CDS Daci_1792 NC_010002.1 1991026 1991553 D PFAM: flavin reductase domain protein FMN-binding; KEGG: aau:AAur_0247 putative monooxygenase component B; flavin reductase domain-containing protein 1991026..1991553 Delftia acidovorans SPH-1 5747350 YP_001562820.1 CDS Daci_1793 NC_010002.1 1991614 1992849 D PFAM: dienelactone hydrolase; KEGG: rme:Rmet_3321 dienelactone hydrolase; carboxymethylenebutenolidase 1991614..1992849 Delftia acidovorans SPH-1 5747351 YP_001562821.1 CDS Daci_1794 NC_010002.1 1992928 1993557 D PFAM: regulatory protein MarR; KEGG: bra:BRADO6297 putative transcriptional regulatory protein, MarR family; MarR family transcriptional regulator 1992928..1993557 Delftia acidovorans SPH-1 5747352 YP_001562822.1 CDS Daci_1795 NC_010002.1 1993550 1994383 D PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B1223 putative aldolase; aldolase II superfamily protein 1993550..1994383 Delftia acidovorans SPH-1 5747353 YP_001562823.1 CDS Daci_1796 NC_010002.1 1994402 1995427 D KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 1994402..1995427 Delftia acidovorans SPH-1 5747354 YP_001562824.1 CDS Daci_1797 NC_010002.1 1995480 1995878 D PFAM: CutA1 divalent ion tolerance protein; KEGG: ajs:Ajs_3521 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 1995480..1995878 Delftia acidovorans SPH-1 5747355 YP_001562825.1 CDS Daci_1798 NC_010002.1 1995865 1996854 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0748 probable extra-cytoplasmic solute receptor; hypothetical protein complement(1995865..1996854) Delftia acidovorans SPH-1 5747356 YP_001562826.1 CDS Daci_1799 NC_010002.1 1997093 1998313 R KEGG: ajs:Ajs_3520 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(1997093..1998313) Delftia acidovorans SPH-1 5747357 YP_001562827.1 CDS Daci_1800 NC_010002.1 1998342 1999820 D PFAM: peptidase M16 domain protein; KEGG: ajs:Ajs_3519 peptidase M16 domain protein; peptidase M16 domain-containing protein 1998342..1999820 Delftia acidovorans SPH-1 5747358 YP_001562828.1 CDS Daci_1801 NC_010002.1 1999847 2001208 D PFAM: peptidase M16 domain protein; KEGG: aav:Aave_3871 peptidase M16 domain protein; peptidase M16 domain-containing protein 1999847..2001208 Delftia acidovorans SPH-1 5747359 YP_001562829.1 CDS Daci_1802 NC_010002.1 2001205 2001915 D TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3517 putative methyltransferase; methyltransferase 2001205..2001915 Delftia acidovorans SPH-1 5747360 YP_001562830.1 CDS Daci_1803 NC_010002.1 2002032 2002547 D KEGG: rfr:Rfer_1667 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2002032..2002547 Delftia acidovorans SPH-1 5747361 YP_001562831.1 CDS Daci_1804 NC_010002.1 2002665 2003786 R KEGG: aav:Aave_3868 hypothetical protein; hypothetical protein complement(2002665..2003786) Delftia acidovorans SPH-1 5747362 YP_001562832.1 CDS Daci_1805 NC_010002.1 2003959 2004279 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated; transport-associated protein complement(2003959..2004279) Delftia acidovorans SPH-1 5747363 YP_001562833.1 CDS Daci_1806 NC_010002.1 2004359 2004748 R KEGG: aav:Aave_3865 hypothetical protein; hypothetical protein complement(2004359..2004748) Delftia acidovorans SPH-1 5747364 YP_001562834.1 CDS Daci_1807 NC_010002.1 2004860 2005237 R PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328; hypothetical protein complement(2004860..2005237) Delftia acidovorans SPH-1 5747365 YP_001562835.1 CDS Daci_1808 NC_010002.1 2005382 2006767 R PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aav:Aave_3863 multi-sensor signal transduction histidine kinase; histidine kinase complement(2005382..2006767) Delftia acidovorans SPH-1 5747366 YP_001562836.1 CDS Daci_1809 NC_010002.1 2006905 2007537 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_3862 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2006905..2007537 Delftia acidovorans SPH-1 5747367 YP_001562837.1 CDS Daci_1810 NC_010002.1 2007626 2008054 R PFAM: response regulator receiver; KEGG: aav:Aave_3861 response regulator receiver protein; response regulator receiver protein complement(2007626..2008054) Delftia acidovorans SPH-1 5747368 YP_001562838.1 CDS Daci_1811 NC_010002.1 2008144 2008896 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: aav:Aave_3860 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein complement(2008144..2008896) Delftia acidovorans SPH-1 5747369 YP_001562839.1 CDS Daci_1812 NC_010002.1 2008973 2010409 R KEGG: ajs:Ajs_3506 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(2008973..2010409) Delftia acidovorans SPH-1 5747370 YP_001562840.1 CDS gpmA NC_010002.1 2010531 2011274 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2010531..2011274) Delftia acidovorans SPH-1 5747371 YP_001562841.1 CDS Daci_1814 NC_010002.1 2011373 2011780 D PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_3504 rhodanese domain protein; rhodanese domain-containing protein 2011373..2011780 Delftia acidovorans SPH-1 5747372 YP_001562842.1 CDS Daci_1815 NC_010002.1 2011869 2012126 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: ajs:Ajs_3503 glutaredoxin 3; glutaredoxin 3 2011869..2012126 Delftia acidovorans SPH-1 5747373 YP_001562843.1 CDS Daci_1816 NC_010002.1 2012208 2012711 D TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: ajs:Ajs_3502 protein-export protein SecB; protein-export protein SecB 2012208..2012711 Delftia acidovorans SPH-1 5747374 YP_001562844.1 CDS gpsA NC_010002.1 2012832 2013842 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2012832..2013842 Delftia acidovorans SPH-1 5747375 YP_001562845.1 CDS Daci_1818 NC_010002.1 2014022 2015317 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(2014022..2015317) Delftia acidovorans SPH-1 5747376 YP_001562846.1 CDS Daci_1819 NC_010002.1 2015390 2016319 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4245 transcriptional regulator, LysR family; LysR family transcriptional regulator 2015390..2016319 Delftia acidovorans SPH-1 5747377 YP_001562847.1 CDS Daci_1820 NC_010002.1 2016342 2016554 R KEGG: bpd:BURPS668_A1895 hypothetical protein; hypothetical protein complement(2016342..2016554) Delftia acidovorans SPH-1 5747378 YP_001562848.1 CDS panC NC_010002.1 2016600 2017451 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2016600..2017451) Delftia acidovorans SPH-1 5747379 YP_001562849.1 CDS panB NC_010002.1 2017510 2018391 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2017510..2018391) Delftia acidovorans SPH-1 5747380 YP_001562850.1 CDS Daci_1823 NC_010002.1 2018479 2020041 R hypothetical protein complement(2018479..2020041) Delftia acidovorans SPH-1 5747381 YP_001562851.1 CDS Daci_1824 NC_010002.1 2020045 2021112 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_1770 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2020045..2021112) Delftia acidovorans SPH-1 5747382 YP_001562852.1 CDS Daci_1825 NC_010002.1 2021347 2022156 D SMART: cyclic nucleotide-binding; KEGG: neu:NE1296 cyclic nucleotide-binding domain:cAMP-dependent protein kinase; cyclic nucleotide-binding protein 2021347..2022156 Delftia acidovorans SPH-1 5747383 YP_001562853.1 CDS Daci_1826 NC_010002.1 2022348 2022689 D KEGG: reh:H16_A1823 hypothetical protein; hypothetical protein 2022348..2022689 Delftia acidovorans SPH-1 5747384 YP_001562854.1 CDS Daci_1829 NC_010002.1 2024831 2025814 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3604 uncharacterized protein UPF0065; hypothetical protein 2024831..2025814 Delftia acidovorans SPH-1 5747386 YP_001562855.1 CDS Daci_1830 NC_010002.1 2025863 2026501 R PFAM: DTW domain containing protein; KEGG: ajs:Ajs_1957 DTW domain containing protein; DTW domain-containing protein complement(2025863..2026501) Delftia acidovorans SPH-1 5747387 YP_001562856.1 CDS Daci_1831 NC_010002.1 2026517 2026876 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: ajs:Ajs_3495 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(2026517..2026876) Delftia acidovorans SPH-1 5747388 YP_001562857.1 CDS Daci_1832 NC_010002.1 2026908 2028125 R KEGG: aav:Aave_3843 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase complement(2026908..2028125) Delftia acidovorans SPH-1 5747389 YP_001562858.1 CDS Daci_1833 NC_010002.1 2028122 2028823 R KEGG: pol:Bpro_0899 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase complement(2028122..2028823) Delftia acidovorans SPH-1 5747390 YP_001562859.1 CDS Daci_1834 NC_010002.1 2028820 2030142 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: aav:Aave_3841 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2028820..2030142) Delftia acidovorans SPH-1 5747391 YP_001562860.1 CDS Daci_1835 NC_010002.1 2030170 2030550 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2030170..2030550) Delftia acidovorans SPH-1 5747392 YP_001562861.1 CDS Daci_1836 NC_010002.1 2030692 2031057 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: aav:Aave_3845 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; hypothetical protein complement(2030692..2031057) Delftia acidovorans SPH-1 5747393 YP_001562862.1 CDS Daci_1837 NC_010002.1 2031066 2031704 R KEGG: aav:Aave_3844 hypothetical protein; hypothetical protein complement(2031066..2031704) Delftia acidovorans SPH-1 5747394 YP_001562863.1 CDS Daci_1838 NC_010002.1 2031764 2032657 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: ajs:Ajs_3492 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(2031764..2032657) Delftia acidovorans SPH-1 5747395 YP_001562864.1 CDS Daci_1839 NC_010002.1 2032706 2032909 R KEGG: ajs:Ajs_3491 hypothetical protein; hypothetical protein complement(2032706..2032909) Delftia acidovorans SPH-1 5747396 YP_001562865.1 CDS Daci_1840 NC_010002.1 2032956 2033453 D KEGG: ajs:Ajs_3490 putative lipoprotein; putative lipoprotein 2032956..2033453 Delftia acidovorans SPH-1 5747397 YP_001562866.1 CDS Daci_1841 NC_010002.1 2033565 2034278 D PFAM: protein of unknown function DUF161; KEGG: ajs:Ajs_3489 protein of unknown function DUF161; hypothetical protein 2033565..2034278 Delftia acidovorans SPH-1 5747398 YP_001562867.1 CDS Daci_1842 NC_010002.1 2034281 2034577 R KEGG: ajs:Ajs_3484 hypothetical protein; hypothetical protein complement(2034281..2034577) Delftia acidovorans SPH-1 5747399 YP_001562868.1 CDS metG NC_010002.1 2034713 2036866 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2034713..2036866) Delftia acidovorans SPH-1 5747400 YP_001562869.1 CDS Daci_1844 NC_010002.1 2036919 2038157 R PFAM: Patatin; KEGG: aav:Aave_3832 patatin; patatin complement(2036919..2038157) Delftia acidovorans SPH-1 5747401 YP_001562870.1 CDS Daci_1845 NC_010002.1 2038214 2038786 R KEGG: aav:Aave_3831 restriction endonuclease; restriction endonuclease complement(2038214..2038786) Delftia acidovorans SPH-1 5747402 YP_001562871.1 CDS Daci_1846 NC_010002.1 2038913 2040004 D PFAM: protein of unknown function DUF59; KEGG: ajs:Ajs_3476 protein of unknown function DUF59; hypothetical protein 2038913..2040004 Delftia acidovorans SPH-1 5747403 YP_001562872.1 CDS Daci_1847 NC_010002.1 2040024 2040992 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_0823 transcriptional regulator, LysR family; LysR family transcriptional regulator 2040024..2040992 Delftia acidovorans SPH-1 5747404 YP_001562873.1 CDS Daci_1848 NC_010002.1 2040989 2043331 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: aav:Aave_3932 isoquinoline 1-oxidoreductase; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(2040989..2043331) Delftia acidovorans SPH-1 5747405 YP_001562874.1 CDS Daci_1849 NC_010002.1 2043439 2044134 R PFAM: isochorismatase hydrolase; KEGG: aav:Aave_3931 isochorismatase hydrolase; isochorismatase hydrolase complement(2043439..2044134) Delftia acidovorans SPH-1 5747406 YP_001562875.1 CDS Daci_1850 NC_010002.1 2044131 2045216 R KEGG: aav:Aave_3930 hypothetical protein; hypothetical protein complement(2044131..2045216) Delftia acidovorans SPH-1 5747407 YP_001562876.1 CDS Daci_1851 NC_010002.1 2045267 2046118 R PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_3929 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2045267..2046118) Delftia acidovorans SPH-1 5747408 YP_001562877.1 CDS Daci_1852 NC_010002.1 2046130 2046918 R PFAM: Asp/Glu/hydantoin racemase; KEGG: aav:Aave_3928 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(2046130..2046918) Delftia acidovorans SPH-1 5747409 YP_001562878.1 CDS Daci_1853 NC_010002.1 2047242 2048399 D PFAM: monooxygenase FAD-binding; KEGG: aav:Aave_3927 salicylate 1-monooxygenase; monooxygenase FAD-binding 2047242..2048399 Delftia acidovorans SPH-1 5747410 YP_001562879.1 CDS Daci_1854 NC_010002.1 2048508 2049065 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: aav:Aave_3926 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 2048508..2049065 Delftia acidovorans SPH-1 5747411 YP_001562880.1 CDS Daci_1855 NC_010002.1 2049062 2052052 D KEGG: aav:Aave_3925 cytochrome c, class I; gluconate 2-dehydrogenase 2049062..2052052 Delftia acidovorans SPH-1 5747412 YP_001562881.1 CDS Daci_1856 NC_010002.1 2052406 2053722 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_3924 major facilitator superfamily MFS_1; major facilitator transporter 2052406..2053722 Delftia acidovorans SPH-1 5747413 YP_001562882.1 CDS Daci_1857 NC_010002.1 2053969 2054601 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: aav:Aave_4248 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2053969..2054601 Delftia acidovorans SPH-1 5747414 YP_001562883.1 CDS Daci_1858 NC_010002.1 2054631 2055041 D hypothetical protein 2054631..2055041 Delftia acidovorans SPH-1 5747415 YP_001562884.1 CDS Daci_1859 NC_010002.1 2055103 2055567 R PFAM: regulatory protein MarR; KEGG: aav:Aave_3922 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2055103..2055567) Delftia acidovorans SPH-1 5747416 YP_001562885.1 CDS Daci_1860 NC_010002.1 2055846 2058029 D PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone); respiratory-chain NADH dehydrogenase domain-containing protein 2055846..2058029 Delftia acidovorans SPH-1 5747417 YP_001562886.1 CDS Daci_1861 NC_010002.1 2058042 2060978 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase alpha subunit; formate dehydrogenase subunit alpha 2058042..2060978 Delftia acidovorans SPH-1 5747418 YP_001562887.1 CDS Daci_1862 NC_010002.1 2060978 2061208 D KEGG: bxe:Bxe_A0963 NAD-dependent formate dehydrogenase, delta subunit; NAD-dependent formate dehydrogenase subunit delta 2060978..2061208 Delftia acidovorans SPH-1 5747419 YP_001562888.1 CDS Daci_1863 NC_010002.1 2061229 2061765 R PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_2116 hypothetical protein; N-acetyltransferase GCN5 complement(2061229..2061765) Delftia acidovorans SPH-1 5747420 YP_001562889.1 CDS Daci_1864 NC_010002.1 2062077 2062961 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0673 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2062077..2062961) Delftia acidovorans SPH-1 5747421 YP_001562890.1 CDS Daci_1865 NC_010002.1 2063004 2063990 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_0097 protein of unknown function DUF6, transmembrane; hypothetical protein 2063004..2063990 Delftia acidovorans SPH-1 5747422 YP_001562891.1 CDS Daci_1866 NC_010002.1 2064007 2065002 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3854 uncharacterized protein UPF0065; hypothetical protein complement(2064007..2065002) Delftia acidovorans SPH-1 5747423 YP_001562892.1 CDS Daci_1867 NC_010002.1 2065114 2066028 R PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pna:Pnap_2116 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase complement(2065114..2066028) Delftia acidovorans SPH-1 5747424 YP_001562893.1 CDS Daci_1868 NC_010002.1 2066076 2067068 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2117 uncharacterized protein UPF0065; hypothetical protein complement(2066076..2067068) Delftia acidovorans SPH-1 5747425 YP_001562894.1 CDS Daci_1869 NC_010002.1 2067111 2067389 R KEGG: ajs:Ajs_0141 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase complement(2067111..2067389) Delftia acidovorans SPH-1 5747426 YP_001562895.1 CDS Daci_1870 NC_010002.1 2067418 2068605 R TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pna:Pnap_2119 muconate and chloromuconate cycloisomerases; muconate and chloromuconate cycloisomerase complement(2067418..2068605) Delftia acidovorans SPH-1 5747427 YP_001562896.1 CDS Daci_1871 NC_010002.1 2068780 2071308 R KEGG: aav:Aave_2236 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2068780..2071308) Delftia acidovorans SPH-1 5747428 YP_001562897.1 CDS Daci_1872 NC_010002.1 2071333 2072253 R PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0499 putative cyclohexadienyl dehydratase; extracellular solute-binding protein complement(2071333..2072253) Delftia acidovorans SPH-1 5747429 YP_001562898.1 CDS Daci_1873 NC_010002.1 2072253 2072624 R PFAM: response regulator receiver; KEGG: aav:Aave_2238 response regulator receiver protein; response regulator receiver protein complement(2072253..2072624) Delftia acidovorans SPH-1 5747430 YP_001562899.1 CDS Daci_1874 NC_010002.1 2072738 2073376 D TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; response regulator receiver; KEGG: aav:Aave_2239 response regulator receiver protein; response regulator receiver protein 2072738..2073376 Delftia acidovorans SPH-1 5747431 YP_001562900.1 CDS Daci_1875 NC_010002.1 2073373 2074140 D PFAM: response regulator receiver; Hpt domain protein; KEGG: aav:Aave_2240 response regulator receiver protein; response regulator receiver protein 2073373..2074140 Delftia acidovorans SPH-1 5747432 YP_001562901.1 CDS Daci_1876 NC_010002.1 2074235 2074432 R hypothetical protein complement(2074235..2074432) Delftia acidovorans SPH-1 5747433 YP_001562902.1 CDS Daci_1877 NC_010002.1 2074429 2075616 R PFAM: PepSY-associated TM helix domain protein; KEGG: aav:Aave_3008 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(2074429..2075616) Delftia acidovorans SPH-1 5747434 YP_001562903.1 CDS Daci_1878 NC_010002.1 2075671 2077839 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_2858 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2075671..2077839) Delftia acidovorans SPH-1 5747435 YP_001562904.1 CDS Daci_1879 NC_010002.1 2077915 2080440 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; TonB-dependent siderophore receptor complement(2077915..2080440) Delftia acidovorans SPH-1 5747436 YP_001562905.1 CDS Daci_1880 NC_010002.1 2080591 2081574 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_5992 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2080591..2081574) Delftia acidovorans SPH-1 5747437 YP_001562906.1 CDS Daci_1881 NC_010002.1 2081692 2082333 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bur:Bcep18194_C6613 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 2081692..2082333 Delftia acidovorans SPH-1 5747438 YP_001562907.1 CDS Daci_1882 NC_010002.1 2082352 2083683 R PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein; MmgE/PrpD family protein complement(2082352..2083683) Delftia acidovorans SPH-1 5747439 YP_001562908.1 CDS Daci_1883 NC_010002.1 2083883 2085049 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5425 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 2083883..2085049 Delftia acidovorans SPH-1 5747440 YP_001562909.1 CDS Daci_1884 NC_010002.1 2085090 2086061 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_3320 uncharacterized protein UPF0065; hypothetical protein 2085090..2086061 Delftia acidovorans SPH-1 5747441 YP_001562910.1 CDS Daci_1885 NC_010002.1 2086070 2088196 D PFAM: CoA-binding domain protein; KEGG: vei:Veis_3321 CoA-binding domain protein; CoA-binding domain-containing protein 2086070..2088196 Delftia acidovorans SPH-1 5747442 YP_001562911.1 CDS Daci_1886 NC_010002.1 2088190 2089044 D PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_4220 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2088190..2089044 Delftia acidovorans SPH-1 5747443 YP_001562912.1 CDS Daci_1887 NC_010002.1 2089054 2089941 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3317 transcriptional regulator, LysR family; LysR family transcriptional regulator 2089054..2089941 Delftia acidovorans SPH-1 5747444 YP_001562913.1 CDS Daci_1888 NC_010002.1 2089925 2091139 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4411 mutlidrug resistance protein, putative; major facilitator transporter complement(2089925..2091139) Delftia acidovorans SPH-1 5747445 YP_001562914.1 CDS Daci_1889 NC_010002.1 2091235 2091822 D KEGG: aav:Aave_4457 transcriptional regulator, TetR family; TetR family transcriptional regulator 2091235..2091822 Delftia acidovorans SPH-1 5747446 YP_001562915.1 CDS Daci_1890 NC_010002.1 2091819 2093285 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppf:Pput_2733 putative transcriptional regulator, GntR family; transcriptional regulator complement(2091819..2093285) Delftia acidovorans SPH-1 5747447 YP_001562916.1 CDS Daci_1891 NC_010002.1 2093322 2094185 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6; hypothetical protein 2093322..2094185 Delftia acidovorans SPH-1 5747448 YP_001562917.1 CDS Daci_1892 NC_010002.1 2094237 2095166 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0989 uncharacterized protein UPF0065; hypothetical protein complement(2094237..2095166) Delftia acidovorans SPH-1 5747449 YP_001562918.1 CDS Daci_1893 NC_010002.1 2095170 2096099 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B2608 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2095170..2096099) Delftia acidovorans SPH-1 5747450 YP_001562919.1 CDS Daci_1894 NC_010002.1 2096245 2097633 D KEGG: sco:SCO7477 hypothetical protein; hypothetical protein 2096245..2097633 Delftia acidovorans SPH-1 5747451 YP_001562920.1 CDS Daci_1895 NC_010002.1 2098107 2098682 D hypothetical protein 2098107..2098682 Delftia acidovorans SPH-1 5747452 YP_001562921.1 CDS Daci_1896 NC_010002.1 2098747 2099637 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_2120 transcriptional regulator, LysR family; LysR family transcriptional regulator 2098747..2099637 Delftia acidovorans SPH-1 5747453 YP_001562922.1 CDS Daci_1897 NC_010002.1 2099883 2100260 D hypothetical protein 2099883..2100260 Delftia acidovorans SPH-1 5747454 YP_001562923.1 CDS Daci_1898 NC_010002.1 2100321 2100677 R hypothetical protein complement(2100321..2100677) Delftia acidovorans SPH-1 5747455 YP_001562924.1 CDS Daci_1899 NC_010002.1 2100802 2102970 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ajs:Ajs_3453 5'-nucleotidase domain protein; 5'-nucleotidase domain-containing protein 2100802..2102970 Delftia acidovorans SPH-1 5747456 YP_001562925.1 CDS Daci_1900 NC_010002.1 2103043 2103657 R PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_1696 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(2103043..2103657) Delftia acidovorans SPH-1 5747457 YP_001562926.1 CDS Daci_1901 NC_010002.1 2103745 2104251 D PFAM: regulatory protein MarR; KEGG: mpt:Mpe_A2923 transcriptional regulator, MarR family; MarR family transcriptional regulator 2103745..2104251 Delftia acidovorans SPH-1 5747458 YP_001562927.1 CDS Daci_1902 NC_010002.1 2104287 2105570 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4323 major facilitator superfamily MFS_1; major facilitator transporter 2104287..2105570 Delftia acidovorans SPH-1 5747459 YP_001562928.1 CDS Daci_1903 NC_010002.1 2105586 2106245 R PFAM: Smr protein/MutS2; KEGG: aav:Aave_3777 Smr protein/MutS2; Smr protein/MutS2 complement(2105586..2106245) Delftia acidovorans SPH-1 5747460 YP_001562929.1 CDS Daci_1904 NC_010002.1 2106315 2106995 R PFAM: DNA repair protein RadC; KEGG: ajs:Ajs_3450 DNA repair protein RadC; DNA repair protein RadC complement(2106315..2106995) Delftia acidovorans SPH-1 5747461 YP_001562930.1 CDS Daci_1905 NC_010002.1 2107093 2107563 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: aav:Aave_3772 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2107093..2107563 Delftia acidovorans SPH-1 5747462 YP_001562931.1 CDS ispH NC_010002.1 2107565 2108563 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2107565..2108563 Delftia acidovorans SPH-1 5747463 YP_001562932.1 CDS Daci_1907 NC_010002.1 2108640 2109338 R PFAM: CBS domain containing protein; KEGG: ajs:Ajs_3446 putative signal transduction protein with CBS domains; hypothetical protein complement(2108640..2109338) Delftia acidovorans SPH-1 5747464 YP_001562933.1 CDS Daci_1908 NC_010002.1 2109476 2110792 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2109476..2110792 Delftia acidovorans SPH-1 5747465 YP_001562934.1 CDS Daci_1909 NC_010002.1 2110953 2111954 R PFAM: integrase family protein; KEGG: pna:Pnap_2283 phage integrase family protein; integrase family protein complement(2110953..2111954) Delftia acidovorans SPH-1 5747467 YP_001562935.1 CDS Daci_1910 NC_010002.1 2112745 2112987 R hypothetical protein complement(2112745..2112987) Delftia acidovorans SPH-1 5747468 YP_001562936.1 CDS Daci_1911 NC_010002.1 2113205 2114245 R hypothetical protein complement(2113205..2114245) Delftia acidovorans SPH-1 5747469 YP_001562937.1 CDS Daci_1912 NC_010002.1 2114425 2114814 R hypothetical protein complement(2114425..2114814) Delftia acidovorans SPH-1 5747470 YP_001562938.1 CDS Daci_1913 NC_010002.1 2114847 2115134 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pnu:Pnuc_0838 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(2114847..2115134) Delftia acidovorans SPH-1 5747471 YP_001562939.1 CDS Daci_1914 NC_010002.1 2115365 2115757 R hypothetical protein complement(2115365..2115757) Delftia acidovorans SPH-1 5747472 YP_001562940.1 CDS Daci_1915 NC_010002.1 2115774 2116403 R PFAM: Exonuclease, phage-type; KEGG: har:HEAR2308 unknown prophage (lambda); putative exonuclease; exonuclease complement(2115774..2116403) Delftia acidovorans SPH-1 5747473 YP_001562941.1 CDS Daci_1916 NC_010002.1 2116384 2117307 R PFAM: RecT protein; KEGG: bbr:BB2192 phage-related DNA recombination protein; RecT protein complement(2116384..2117307) Delftia acidovorans SPH-1 5747474 YP_001562942.1 CDS Daci_1917 NC_010002.1 2117413 2117673 R hypothetical protein complement(2117413..2117673) Delftia acidovorans SPH-1 5747475 YP_001562943.1 CDS Daci_1918 NC_010002.1 2118059 2118244 R hypothetical protein complement(2118059..2118244) Delftia acidovorans SPH-1 5747476 YP_001562944.1 CDS Daci_1919 NC_010002.1 2118241 2118618 R hypothetical protein complement(2118241..2118618) Delftia acidovorans SPH-1 5747477 YP_001562945.1 CDS Daci_1920 NC_010002.1 2118620 2118919 R hypothetical protein complement(2118620..2118919) Delftia acidovorans SPH-1 5747478 YP_001562946.1 CDS Daci_1921 NC_010002.1 2118907 2119143 R hypothetical protein complement(2118907..2119143) Delftia acidovorans SPH-1 5747479 YP_001562947.1 CDS Daci_1922 NC_010002.1 2119337 2119633 R hypothetical protein complement(2119337..2119633) Delftia acidovorans SPH-1 5747480 YP_001562948.1 CDS Daci_1923 NC_010002.1 2119630 2119878 R hypothetical protein complement(2119630..2119878) Delftia acidovorans SPH-1 5747481 YP_001562949.1 CDS Daci_1924 NC_010002.1 2120323 2120634 R hypothetical protein complement(2120323..2120634) Delftia acidovorans SPH-1 5747482 YP_001562950.1 CDS Daci_1925 NC_010002.1 2120680 2120925 R hypothetical protein complement(2120680..2120925) Delftia acidovorans SPH-1 5747483 YP_001562951.1 CDS Daci_1926 NC_010002.1 2121008 2121349 R hypothetical protein complement(2121008..2121349) Delftia acidovorans SPH-1 5747484 YP_001562952.1 CDS Daci_1927 NC_010002.1 2122345 2122542 R PFAM: protein of unknown function DUF1508; KEGG: pfo:Pfl_1378 duplicated hypothetical protein; hypothetical protein complement(2122345..2122542) Delftia acidovorans SPH-1 5747485 YP_001562953.1 CDS Daci_1928 NC_010002.1 2122766 2123209 R hypothetical protein complement(2122766..2123209) Delftia acidovorans SPH-1 5747486 YP_001562954.1 CDS Daci_1929 NC_010002.1 2123467 2124114 R PFAM: peptidase S24 and S26 domain protein; KEGG: aav:Aave_1607 putative prophage repressor; peptidase S24/S26 domain-containing protein complement(2123467..2124114) Delftia acidovorans SPH-1 5747487 YP_001562955.1 CDS Daci_1930 NC_010002.1 2124428 2124655 D hypothetical protein 2124428..2124655 Delftia acidovorans SPH-1 5747488 YP_001562956.1 CDS Daci_1931 NC_010002.1 2124900 2125676 D KEGG: ecs:ECs1073 hypothetical protein; hypothetical protein 2124900..2125676 Delftia acidovorans SPH-1 5747489 YP_001562957.1 CDS Daci_1932 NC_010002.1 2125673 2126047 D hypothetical protein 2125673..2126047 Delftia acidovorans SPH-1 5747490 YP_001562958.1 CDS Daci_1933 NC_010002.1 2126025 2126996 D KEGG: bbr:BB3510 phage-related hypothetical protein; hypothetical protein 2126025..2126996 Delftia acidovorans SPH-1 5747491 YP_001562959.1 CDS Daci_1934 NC_010002.1 2127169 2127666 D hypothetical protein 2127169..2127666 Delftia acidovorans SPH-1 5747492 YP_001562960.1 CDS Daci_1935 NC_010002.1 2127663 2127911 D hypothetical protein 2127663..2127911 Delftia acidovorans SPH-1 5747493 YP_001562961.1 CDS Daci_1936 NC_010002.1 2127908 2128105 D hypothetical protein 2127908..2128105 Delftia acidovorans SPH-1 5747494 YP_001562962.1 CDS Daci_1937 NC_010002.1 2128098 2128436 D KEGG: sit:TM1040_1689 hypothetical protein; hypothetical protein 2128098..2128436 Delftia acidovorans SPH-1 5747495 YP_001562963.1 CDS Daci_1938 NC_010002.1 2128433 2128765 D hypothetical protein 2128433..2128765 Delftia acidovorans SPH-1 5747496 YP_001562964.1 CDS Daci_1939 NC_010002.1 2128762 2129337 D PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein; lambda NinG family protein 2128762..2129337 Delftia acidovorans SPH-1 5747497 YP_001562965.1 CDS Daci_1940 NC_010002.1 2129351 2129737 D ECF subfamily RNA polymerase sigma-24 factor 2129351..2129737 Delftia acidovorans SPH-1 5747498 YP_001562966.1 CDS Daci_1941 NC_010002.1 2130548 2131021 D KEGG: ret:RHE_CH01092 putative terminase small subunit protein; putative terminase small subunit protein 2130548..2131021 Delftia acidovorans SPH-1 5747499 YP_001562967.1 CDS Daci_1942 NC_010002.1 2131018 2132319 D TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: bhe:BH09390 phage related protein; PBSX family phage terminase large subunit 2131018..2132319 Delftia acidovorans SPH-1 5747500 YP_001562968.1 CDS Daci_1943 NC_010002.1 2132349 2134640 D KEGG: smd:Smed_1838 hypothetical protein; hypothetical protein 2132349..2134640 Delftia acidovorans SPH-1 5747501 YP_001562969.1 CDS Daci_1944 NC_010002.1 2134624 2134938 D KEGG: bbt:BBta_5790 hypothetical protein; hypothetical protein 2134624..2134938 Delftia acidovorans SPH-1 5747502 YP_001562970.1 CDS Daci_1945 NC_010002.1 2135126 2136061 D KEGG: smd:Smed_1831 hypothetical protein; hypothetical protein 2135126..2136061 Delftia acidovorans SPH-1 5747503 YP_001562971.1 CDS Daci_1946 NC_010002.1 2136096 2137016 D KEGG: bbt:BBta_5785 putative phage major head protein; putative phage major head protein 2136096..2137016 Delftia acidovorans SPH-1 5747504 YP_001562972.1 CDS Daci_1947 NC_010002.1 2137056 2137487 D hypothetical protein 2137056..2137487 Delftia acidovorans SPH-1 5747505 YP_001562973.1 CDS Daci_1948 NC_010002.1 2137548 2137862 D hypothetical protein 2137548..2137862 Delftia acidovorans SPH-1 5747506 YP_001562974.1 CDS Daci_1949 NC_010002.1 2137862 2138173 D hypothetical protein 2137862..2138173 Delftia acidovorans SPH-1 5747507 YP_001562975.1 CDS Daci_1950 NC_010002.1 2138170 2138787 D KEGG: zmo:ZMO0389 constituent protein; hypothetical protein 2138170..2138787 Delftia acidovorans SPH-1 5747508 YP_001562976.1 CDS Daci_1951 NC_010002.1 2138789 2139853 D KEGG: cel:H02F09.3 H02F09.3; hypothetical protein 2138789..2139853 Delftia acidovorans SPH-1 5747509 YP_001562977.1 CDS Daci_1952 NC_010002.1 2140716 2141087 D hypothetical protein 2140716..2141087 Delftia acidovorans SPH-1 5747510 YP_001562978.1 CDS Daci_1953 NC_010002.1 2141129 2142673 D hypothetical protein 2141129..2142673 Delftia acidovorans SPH-1 5747511 YP_001562979.1 CDS Daci_1954 NC_010002.1 2142673 2142918 D hypothetical protein 2142673..2142918 Delftia acidovorans SPH-1 5747512 YP_001562980.1 CDS Daci_1955 NC_010002.1 2142927 2143937 D KEGG: ddi:DDBDRAFT_0188625 hypothetical protein; hypothetical protein 2142927..2143937 Delftia acidovorans SPH-1 5747513 YP_001562981.1 CDS Daci_1956 NC_010002.1 2144018 2144293 D hypothetical protein 2144018..2144293 Delftia acidovorans SPH-1 5747514 YP_001562982.1 CDS Daci_1957 NC_010002.1 2144295 2145095 D KEGG: mul:MUL_3292 PE-PGRS family protein; hypothetical protein 2144295..2145095 Delftia acidovorans SPH-1 5747515 YP_001562983.1 CDS Daci_1958 NC_010002.1 2145095 2146600 D hypothetical protein 2145095..2146600 Delftia acidovorans SPH-1 5747516 YP_001562984.1 CDS Daci_1959 NC_010002.1 2146600 2148747 D KEGG: bpd:BURPS668_A2339 hypothetical protein; hypothetical protein 2146600..2148747 Delftia acidovorans SPH-1 5747517 YP_001562985.1 CDS Daci_1960 NC_010002.1 2148894 2149316 D KEGG: mms:mma_2193 hypothetical protein; hypothetical protein 2148894..2149316 Delftia acidovorans SPH-1 5747518 YP_001562986.1 CDS Daci_1961 NC_010002.1 2149385 2149702 D hypothetical protein 2149385..2149702 Delftia acidovorans SPH-1 5747519 YP_001562987.1 CDS Daci_1962 NC_010002.1 2149703 2150275 R PFAM: HNH endonuclease; KEGG: gfo:GFO_2427 HNH endonuclease family protein; HNH endonuclease complement(2149703..2150275) Delftia acidovorans SPH-1 5747520 YP_001562988.1 CDS Daci_1963 NC_010002.1 2150287 2150793 D PFAM: protein of unknown function DUF847; KEGG: abu:Abu_1684 hypothetical protein; hypothetical protein 2150287..2150793 Delftia acidovorans SPH-1 5747521 YP_001562989.1 CDS Daci_1964 NC_010002.1 2150790 2151233 D KEGG: mpt:Mpe_A1850 hypothetical protein; hypothetical protein 2150790..2151233 Delftia acidovorans SPH-1 5747522 YP_001562990.1 CDS Daci_1965 NC_010002.1 2151542 2152009 D hypothetical protein 2151542..2152009 Delftia acidovorans SPH-1 5747523 YP_001562991.1 CDS Daci_1966 NC_010002.1 2152251 2152685 D hypothetical protein 2152251..2152685 Delftia acidovorans SPH-1 5747524 YP_001562992.1 CDS Daci_1967 NC_010002.1 2153150 2153278 R hypothetical protein complement(2153150..2153278) Delftia acidovorans SPH-1 5747525 YP_001562993.1 CDS Daci_1968 NC_010002.1 2153336 2153617 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(2153336..2153617) Delftia acidovorans SPH-1 5747526 YP_001562994.1 CDS Daci_1969 NC_010002.1 2153752 2154111 R hypothetical protein complement(2153752..2154111) Delftia acidovorans SPH-1 5747527 YP_001562995.1 CDS Daci_1970 NC_010002.1 2154263 2154613 R KEGG: azo:azo1773 hypothetical protein; hypothetical protein complement(2154263..2154613) Delftia acidovorans SPH-1 5747528 YP_001562996.1 CDS Daci_1971 NC_010002.1 2154743 2155099 R PFAM: PRC-barrel domain protein; KEGG: sal:Sala_1396 PRC-barrel; PRC-barrel domain-containing protein complement(2154743..2155099) Delftia acidovorans SPH-1 5747529 YP_001562997.1 CDS Daci_1972 NC_010002.1 2155503 2155880 D KEGG: pna:Pnap_3624 hypothetical protein; hypothetical protein 2155503..2155880 Delftia acidovorans SPH-1 5747530 YP_001562998.1 CDS Daci_1973 NC_010002.1 2155981 2156331 D PFAM: protein of unknown function DUF1304; KEGG: mpt:Mpe_A3500 hypothetical protein; hypothetical protein 2155981..2156331 Delftia acidovorans SPH-1 5747531 YP_001562999.1 CDS Daci_1974 NC_010002.1 2156365 2156991 R KEGG: pna:Pnap_3588 hypothetical protein; hypothetical protein complement(2156365..2156991) Delftia acidovorans SPH-1 5747532 YP_001563000.1 CDS Daci_1975 NC_010002.1 2157006 2157812 R KEGG: pna:Pnap_3592 hypothetical protein; hypothetical protein complement(2157006..2157812) Delftia acidovorans SPH-1 5747533 YP_001563001.1 CDS Daci_1976 NC_010002.1 2157809 2158264 R hypothetical protein complement(2157809..2158264) Delftia acidovorans SPH-1 5747534 YP_001563002.1 CDS Daci_1977 NC_010002.1 2158291 2158911 R hypothetical protein complement(2158291..2158911) Delftia acidovorans SPH-1 5747535 YP_001563003.1 CDS Daci_1978 NC_010002.1 2158911 2159522 R KEGG: pna:Pnap_3588 hypothetical protein; hypothetical protein complement(2158911..2159522) Delftia acidovorans SPH-1 5747536 YP_001563004.1 CDS Daci_1979 NC_010002.1 2159596 2161947 R KEGG: pna:Pnap_3593 hypothetical protein; hypothetical protein complement(2159596..2161947) Delftia acidovorans SPH-1 5747537 YP_001563005.1 CDS Daci_1980 NC_010002.1 2162938 2164599 R KEGG: bbr:BB1921 putative 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(2162938..2164599) Delftia acidovorans SPH-1 5747538 YP_001563006.1 CDS Daci_1981 NC_010002.1 2164772 2165710 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5693 transcriptional regulator, LysR family; LysR family transcriptional regulator 2164772..2165710 Delftia acidovorans SPH-1 5747539 YP_001563007.1 CDS Daci_1982 NC_010002.1 2165728 2166639 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0865 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(2165728..2166639) Delftia acidovorans SPH-1 5747540 YP_001563008.1 CDS Daci_1983 NC_010002.1 2166782 2166988 D KEGG: reh:H16_B0866 hypothetical protein; hypothetical protein 2166782..2166988 Delftia acidovorans SPH-1 5747541 YP_001563009.1 CDS Daci_1984 NC_010002.1 2167002 2168384 D PFAM: Na+/solute symporter; KEGG: reh:H16_B0867 APC transporter, SSS family; Na+/solute symporter 2167002..2168384 Delftia acidovorans SPH-1 5747542 YP_001563010.1 CDS Daci_1985 NC_010002.1 2168398 2170062 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reh:H16_B0868 metal-dependent hydrolase; amidohydrolase 3 2168398..2170062 Delftia acidovorans SPH-1 5747543 YP_001563011.1 CDS Daci_1986 NC_010002.1 2170059 2171069 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: reh:H16_B0869 hypothetical protein; cobalamin synthesis protein P47K 2170059..2171069 Delftia acidovorans SPH-1 5747544 YP_001563012.1 CDS Daci_1987 NC_010002.1 2171269 2172255 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rme:Rmet_5665 NmrA-like protein; NAD-dependent epimerase/dehydratase complement(2171269..2172255) Delftia acidovorans SPH-1 5747546 YP_001563013.1 CDS Daci_1988 NC_010002.1 2172342 2173250 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5666 transcriptional regulator, LysR family; LysR family transcriptional regulator 2172342..2173250 Delftia acidovorans SPH-1 5747547 YP_001563014.1 CDS Daci_1989 NC_010002.1 2173270 2173479 R hypothetical protein complement(2173270..2173479) Delftia acidovorans SPH-1 5747548 YP_001563015.1 CDS Daci_1990 NC_010002.1 2173722 2174768 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2038 conserved hypothetical protein 698; hypothetical protein complement(2173722..2174768) Delftia acidovorans SPH-1 5747549 YP_001563016.1 CDS Daci_1991 NC_010002.1 2174765 2175739 R PFAM: phosphate acetyl/butaryl transferase; KEGG: acr:Acry_3031 phosphate butyryltransferase; phosphate butyryltransferase complement(2174765..2175739) Delftia acidovorans SPH-1 5747550 YP_001563017.1 CDS Daci_1992 NC_010002.1 2175963 2177774 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(2175963..2177774) Delftia acidovorans SPH-1 5747551 YP_001563018.1 CDS Daci_1993 NC_010002.1 2177906 2178733 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B3754 regulatory protein, IclR; IclR family transcriptional regulator 2177906..2178733 Delftia acidovorans SPH-1 5747552 YP_001563019.1 CDS Daci_1994 NC_010002.1 2178726 2179703 D KEGG: reu:Reut_B3755 putative MoxR-like ATPase; PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; cobaltochelatase 2178726..2179703 Delftia acidovorans SPH-1 5747553 YP_001563020.1 CDS Daci_1995 NC_010002.1 2179693 2181384 D PFAM: Cobalt chelatase CobT subunit; KEGG: reu:Reut_B3756 CobT protein; cobaltochelatase 2179693..2181384 Delftia acidovorans SPH-1 5747554 YP_001563021.1 CDS Daci_1996 NC_010002.1 2181479 2182243 R PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_2121 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2181479..2182243) Delftia acidovorans SPH-1 5747555 YP_001563022.1 CDS Daci_1997 NC_010002.1 2182347 2182715 D KEGG: vei:Veis_4741 hypothetical protein; hypothetical protein 2182347..2182715 Delftia acidovorans SPH-1 5747556 YP_001563023.1 CDS Daci_1998 NC_010002.1 2182840 2183505 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: mpt:Mpe_A3172 putative lipoprotein; electron transport protein SCO1/SenC 2182840..2183505 Delftia acidovorans SPH-1 5747557 YP_001563024.1 CDS Daci_1999 NC_010002.1 2183734 2185572 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:blr0364 hypothetical protein; diguanylate cyclase 2183734..2185572 Delftia acidovorans SPH-1 5747558 YP_001563025.1 CDS Daci_2000 NC_010002.1 2185636 2186403 R KEGG: hch:HCH_00928 hypothetical protein; hypothetical protein complement(2185636..2186403) Delftia acidovorans SPH-1 5747559 YP_001563026.1 CDS Daci_2001 NC_010002.1 2186426 2186953 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: aav:Aave_2532 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2186426..2186953) Delftia acidovorans SPH-1 5747560 YP_001563027.1 CDS Daci_2002 NC_010002.1 2187593 2188276 D hypothetical protein 2187593..2188276 Delftia acidovorans SPH-1 5747561 YP_001563028.1 CDS Daci_2003 NC_010002.1 2188318 2188659 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: azo:azo1176 nitrite reductase small subunit, probable; nitrite reductase (NAD(P)H) small subunit complement(2188318..2188659) Delftia acidovorans SPH-1 5747562 YP_001563029.1 CDS Daci_2004 NC_010002.1 2188708 2191224 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: azo:azo1175 nitrite reductase (NAD(P)H) large subunit,probable; nitrite reductase (NAD(P)H) large subunit complement(2188708..2191224) Delftia acidovorans SPH-1 5747563 YP_001563030.1 CDS Daci_2005 NC_010002.1 2191476 2192483 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B2519 transcriptional regulator; AraC family transcriptional regulator complement(2191476..2192483) Delftia acidovorans SPH-1 5747564 YP_001563031.1 CDS Daci_2006 NC_010002.1 2192646 2193494 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bam:Bamb_1586 taurine dioxygenase; taurine dioxygenase 2192646..2193494 Delftia acidovorans SPH-1 5747565 YP_001563032.1 CDS Daci_2007 NC_010002.1 2193524 2194582 D PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B3902 protein of unknown function DUF849, prokaryotic; hypothetical protein 2193524..2194582 Delftia acidovorans SPH-1 5747566 YP_001563033.1 CDS Daci_2008 NC_010002.1 2194597 2195565 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_C6081 hypothetical protein; hypothetical protein 2194597..2195565 Delftia acidovorans SPH-1 5747567 YP_001563034.1 CDS Daci_2009 NC_010002.1 2195605 2196576 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_B3840 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 2195605..2196576 Delftia acidovorans SPH-1 5747568 YP_001563035.1 CDS Daci_2010 NC_010002.1 2196589 2197671 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_4629 transcriptional regulator, AraC family; AraC family transcriptional regulator 2196589..2197671 Delftia acidovorans SPH-1 5747569 YP_001563036.1 CDS Daci_2011 NC_010002.1 2197676 2198734 R PFAM: protein of unknown function DUF849; KEGG: reh:H16_B1005 hypothetical protein; hypothetical protein complement(2197676..2198734) Delftia acidovorans SPH-1 5747570 YP_001563037.1 CDS Daci_2012 NC_010002.1 2198793 2199638 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A1602 taurine dioxygenase; taurine dioxygenase complement(2198793..2199638) Delftia acidovorans SPH-1 5747571 YP_001563038.1 CDS Daci_2013 NC_010002.1 2199659 2200627 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3854 hypothetical protein; hypothetical protein complement(2199659..2200627) Delftia acidovorans SPH-1 5747572 YP_001563039.1 CDS Daci_2014 NC_010002.1 2200730 2202094 D KEGG: vei:Veis_4644 porin, gram-negative type; porin 2200730..2202094 Delftia acidovorans SPH-1 5747573 YP_001563040.1 CDS Daci_2015 NC_010002.1 2202179 2204713 D PFAM: protein of unknown function DUF214; KEGG: aav:Aave_3824 protein of unknown function DUF214; hypothetical protein 2202179..2204713 Delftia acidovorans SPH-1 5747574 YP_001563041.1 CDS Daci_2016 NC_010002.1 2205528 2206421 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A3311 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2205528..2206421) Delftia acidovorans SPH-1 5747575 YP_001563042.1 CDS Daci_2017 NC_010002.1 2206615 2208165 D PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2785 probable integral membrane efflux protein; major facilitator transporter 2206615..2208165 Delftia acidovorans SPH-1 5747576 YP_001563043.1 CDS Daci_2018 NC_010002.1 2208205 2208606 D PFAM: globin; KEGG: ajs:Ajs_3454 globin; globin 2208205..2208606 Delftia acidovorans SPH-1 5747577 YP_001563044.1 CDS Daci_2019 NC_010002.1 2208687 2210108 R PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_B0685 putative taurine dehydrogenase, large subunit; FAD dependent oxidoreductase complement(2208687..2210108) Delftia acidovorans SPH-1 5747578 YP_001563045.1 CDS Daci_2020 NC_010002.1 2210444 2210842 D PFAM: protein of unknown function DUF1486; KEGG: reh:H16_B1892 hypothetical protein; hypothetical protein 2210444..2210842 Delftia acidovorans SPH-1 5747579 YP_001563046.1 CDS Daci_2021 NC_010002.1 2210967 2212409 D PFAM: Spore germination protein; amino acid permease-associated region; KEGG: reu:Reut_B3753 amino acid permease-associated region; amino acid permease-associated protein 2210967..2212409 Delftia acidovorans SPH-1 5747580 YP_001563047.1 CDS Daci_2022 NC_010002.1 2212457 2213986 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reh:H16_B1891 transcriptional regulator, MocR family; transcriptional regulator complement(2212457..2213986) Delftia acidovorans SPH-1 5747581 YP_001563048.1 CDS Daci_2023 NC_010002.1 2214610 2215176 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_0950 transcription elongation factor GreB; transcription elongation factor GreB 2214610..2215176 Delftia acidovorans SPH-1 5747584 YP_001563049.1 CDS Daci_2024 NC_010002.1 2215181 2216554 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aav:Aave_3237 lytic murein transglycosylase; lytic murein transglycosylase complement(2215181..2216554) Delftia acidovorans SPH-1 5747585 YP_001563050.1 CDS Daci_2025 NC_010002.1 2216641 2217507 D PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2; silent information regulator protein Sir2 2216641..2217507 Delftia acidovorans SPH-1 5747586 YP_001563051.1 CDS Daci_2026 NC_010002.1 2217535 2219802 R KEGG: aav:Aave_3585 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(2217535..2219802) Delftia acidovorans SPH-1 5747587 YP_001563052.1 CDS Daci_2027 NC_010002.1 2219904 2220107 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2219904..2220107) Delftia acidovorans SPH-1 5747588 YP_001563053.1 CDS gmk NC_010002.1 2220126 2220788 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(2220126..2220788) Delftia acidovorans SPH-1 5747589 YP_001563054.1 CDS Daci_2029 NC_010002.1 2220800 2221708 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ajs:Ajs_0926 domain of unknown function DUF1732; hypothetical protein complement(2220800..2221708) Delftia acidovorans SPH-1 5747590 YP_001563055.1 CDS Daci_2030 NC_010002.1 2221783 2222814 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ajs:Ajs_0925 protein kinase; serine/threonine protein kinase 2221783..2222814 Delftia acidovorans SPH-1 5747591 YP_001563056.1 CDS Daci_2031 NC_010002.1 2222811 2223716 D PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_0924 protein phosphatase 2C domain protein; protein serine/threonine phosphatase 2222811..2223716 Delftia acidovorans SPH-1 5747592 YP_001563057.1 CDS Daci_2032 NC_010002.1 2223816 2224418 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 2223816..2224418 Delftia acidovorans SPH-1 5747593 YP_001563058.1 CDS Daci_2033 NC_010002.1 2224415 2225659 D KEGG: aav:Aave_3577 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 2224415..2225659 Delftia acidovorans SPH-1 5747594 YP_001563059.1 CDS Daci_2034 NC_010002.1 2225738 2226088 R KEGG: vei:Veis_4154 hypothetical protein; hypothetical protein complement(2225738..2226088) Delftia acidovorans SPH-1 5747595 YP_001563060.1 CDS Daci_2035 NC_010002.1 2226240 2227841 R PFAM: Sporulation domain protein; KEGG: aav:Aave_3575 sporulation domain protein; sporulation domain-containing protein complement(2226240..2227841) Delftia acidovorans SPH-1 5747596 YP_001563061.1 CDS Daci_2036 NC_010002.1 2227992 2229308 R KEGG: bxe:Bxe_A2724 fumarylacetoacetase (HmgB); TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(2227992..2229308) Delftia acidovorans SPH-1 5747597 YP_001563062.1 CDS Daci_2037 NC_010002.1 2229383 2230201 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_0861 3-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2229383..2230201) Delftia acidovorans SPH-1 5747598 YP_001563063.1 CDS Daci_2038 NC_010002.1 2230198 2230941 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bbr:BB4038 putative transcriptional regulator; GntR family transcriptional regulator complement(2230198..2230941) Delftia acidovorans SPH-1 5747599 YP_001563064.1 CDS Daci_2039 NC_010002.1 2231131 2233362 D KEGG: aav:Aave_2994 hypothetical protein; hypothetical protein 2231131..2233362 Delftia acidovorans SPH-1 5747600 YP_001563065.1 CDS Daci_2040 NC_010002.1 2233435 2234550 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2233435..2234550 Delftia acidovorans SPH-1 5747601 YP_001563066.1 CDS Daci_2041 NC_010002.1 2235004 2236305 D PFAM: multi antimicrobial extrusion protein MatE; multi anti extrusion protein MatE 2235004..2236305 Delftia acidovorans SPH-1 5747602 YP_001563067.1 CDS Daci_2042 NC_010002.1 2236412 2236867 R KEGG: fal:FRAAL3454 hypothetical protein; aromatic catabolism protein-like protein complement(2236412..2236867) Delftia acidovorans SPH-1 5747603 YP_001563068.1 CDS Daci_2043 NC_010002.1 2236860 2237327 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: gur:Gura_3524 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2236860..2237327) Delftia acidovorans SPH-1 5747604 YP_001563069.1 CDS Daci_2044 NC_010002.1 2237410 2238192 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2321 probable dehydrogenase/reductase oxidoreductase protein; short-chain dehydrogenase/reductase SDR complement(2237410..2238192) Delftia acidovorans SPH-1 5747605 YP_001563070.1 CDS Daci_2045 NC_010002.1 2238259 2239194 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: afw:Anae109_2895 transcriptional regulator, LysR family; LysR family transcriptional regulator 2238259..2239194 Delftia acidovorans SPH-1 5747606 YP_001563071.1 CDS Daci_2046 NC_010002.1 2239245 2240093 R Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA complement(2239245..2240093) Delftia acidovorans SPH-1 5747607 YP_001563072.1 CDS Daci_2047 NC_010002.1 2240343 2240681 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(2240343..2240681) Delftia acidovorans SPH-1 5747608 YP_001563073.1 CDS Daci_2048 NC_010002.1 2240741 2241166 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(2240741..2241166) Delftia acidovorans SPH-1 5747609 YP_001563074.1 CDS Daci_2049 NC_010002.1 2243436 2243942 D hypothetical protein 2243436..2243942 Delftia acidovorans SPH-1 5747610 YP_001563075.1 CDS Daci_2050 NC_010002.1 2243968 2244282 D PFAM: regulatory protein ArsR; KEGG: sme:SMc03843 putative transcription regulator protein; ArsR family transcriptional regulator 2243968..2244282 Delftia acidovorans SPH-1 5747611 YP_001563076.1 CDS Daci_2051 NC_010002.1 2244279 2244635 D KEGG: sme:SMc03842 hypothetical protein; hypothetical protein 2244279..2244635 Delftia acidovorans SPH-1 5747612 YP_001563077.1 CDS clpP NC_010002.1 2244742 2245347 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2244742..2245347 Delftia acidovorans SPH-1 5747613 YP_001563078.1 CDS Daci_2053 NC_010002.1 2245718 2246683 R PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease complement(2245718..2246683) Delftia acidovorans SPH-1 5747614 YP_001563079.1 CDS Daci_2054 NC_010002.1 2246824 2248035 R PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC0229 MFS transporter; major facilitator transporter complement(2246824..2248035) Delftia acidovorans SPH-1 5747615 YP_001563080.1 CDS Daci_2055 NC_010002.1 2248047 2248394 R PFAM: protein of unknown function DUF486; KEGG: mes:Meso_1652 protein of unknown function DUF486; hypothetical protein complement(2248047..2248394) Delftia acidovorans SPH-1 5747616 YP_001563081.1 CDS Daci_2056 NC_010002.1 2248532 2249191 R KEGG: aav:Aave_0171 putative secreted protein; hypothetical protein complement(2248532..2249191) Delftia acidovorans SPH-1 5747617 YP_001563082.1 CDS Daci_2057 NC_010002.1 2249383 2250729 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aav:Aave_0172 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54-specific transcriptional regulator complement(2249383..2250729) Delftia acidovorans SPH-1 5747618 YP_001563083.1 CDS Daci_2058 NC_010002.1 2250714 2252138 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_6446 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2250714..2252138) Delftia acidovorans SPH-1 5747619 YP_001563084.1 CDS Daci_2059 NC_010002.1 2252301 2252996 D hypothetical protein 2252301..2252996 Delftia acidovorans SPH-1 5747620 YP_001563085.1 CDS Daci_2060 NC_010002.1 2253012 2254451 D PFAM: EAL domain protein; KEGG: pfl:PFL_3819 EAL domain protein; diguanylate phosphodiesterase 2253012..2254451 Delftia acidovorans SPH-1 5747621 YP_001563086.1 CDS Daci_2061 NC_010002.1 2254495 2255751 R PFAM: glycosyl transferase group 1; KEGG: eba:ebA1793 putative glycosyl transferase; glycosyl transferase group 1 protein complement(2254495..2255751) Delftia acidovorans SPH-1 5747622 YP_001563087.1 CDS Daci_2062 NC_010002.1 2255804 2257198 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A2790 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(2255804..2257198) Delftia acidovorans SPH-1 5747623 YP_001563088.1 CDS Daci_2063 NC_010002.1 2257249 2259537 R KEGG: bbr:BB1833 hypothetical protein; membrane protein complement(2257249..2259537) Delftia acidovorans SPH-1 5747624 YP_001563089.1 CDS Daci_2064 NC_010002.1 2259554 2260096 R PFAM: TadE family protein; KEGG: bpa:BPP2374 hypothetical protein; TadE family protein complement(2259554..2260096) Delftia acidovorans SPH-1 5747625 YP_001563090.1 CDS Daci_2065 NC_010002.1 2260093 2260608 R PFAM: TadE family protein; KEGG: bmn:BMA10247_1050 TadE family protein; TadE family protein complement(2260093..2260608) Delftia acidovorans SPH-1 5747626 YP_001563091.1 CDS Daci_2066 NC_010002.1 2260642 2261082 R hypothetical protein complement(2260642..2261082) Delftia acidovorans SPH-1 5747627 YP_001563092.1 CDS Daci_2067 NC_010002.1 2261093 2262124 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I2537 TPR domain protein; hypothetical protein complement(2261093..2262124) Delftia acidovorans SPH-1 5747628 YP_001563093.1 CDS Daci_2068 NC_010002.1 2262127 2263131 R PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein; type II secretion system protein complement(2262127..2263131) Delftia acidovorans SPH-1 5747629 YP_001563094.1 CDS Daci_2069 NC_010002.1 2263180 2264142 R PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB; type II secretion system protein complement(2263180..2264142) Delftia acidovorans SPH-1 5747630 YP_001563095.1 CDS Daci_2070 NC_010002.1 2264139 2265461 R PFAM: type II secretion system protein E; KEGG: bch:Bcen2424_1523 type II secretion system protein E; type II secretion system protein E complement(2264139..2265461) Delftia acidovorans SPH-1 5747631 YP_001563096.1 CDS Daci_2071 NC_010002.1 2265469 2266995 R KEGG: bvi:Bcep1808_1488 response regulator receiver protein; Flp pilus assembly protein ATPase CpaE-like protein complement(2265469..2266995) Delftia acidovorans SPH-1 5747632 YP_001563097.1 CDS Daci_2072 NC_010002.1 2267000 2268478 R PFAM: type II and III secretion system protein; KEGG: bvi:Bcep1808_1487 type II and III secretion system protein; type II and III secretion system protein complement(2267000..2268478) Delftia acidovorans SPH-1 5747633 YP_001563098.1 CDS Daci_2073 NC_010002.1 2268504 2269595 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB complement(2268504..2269595) Delftia acidovorans SPH-1 5747634 YP_001563099.1 CDS Daci_2074 NC_010002.1 2269743 2270312 R PFAM: peptidase A24A prepilin type IV; KEGG: bam:Bamb_1400 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV complement(2269743..2270312) Delftia acidovorans SPH-1 5747635 YP_001563100.1 CDS Daci_2075 NC_010002.1 2270315 2270491 R PFAM: Flp/Fap pilin component; KEGG: eba:ebD22 INTERPRO: probable Flp/Fap pilin component; Flp/Fap pilin component complement(2270315..2270491) Delftia acidovorans SPH-1 5747636 YP_001563101.1 CDS Daci_2076 NC_010002.1 2270583 2270789 R PFAM: Flp/Fap pilin component; KEGG: reh:H16_A0722 flp pilus assembly protein, pilin Flp; Flp/Fap pilin component complement(2270583..2270789) Delftia acidovorans SPH-1 5747637 YP_001563102.1 CDS Daci_2077 NC_010002.1 2270865 2272607 R PFAM: outer membrane efflux protein; KEGG: mag:amb3061 outer membrane protein; outer membrane efflux protein complement(2270865..2272607) Delftia acidovorans SPH-1 5747638 YP_001563103.1 CDS Daci_2078 NC_010002.1 2272607 2273983 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mag:amb3476 membrane-fusion protein; multidrug resistance efflux pump; HlyD family type I secretion membrane fusion protein complement(2272607..2273983) Delftia acidovorans SPH-1 5747639 YP_001563104.1 CDS Daci_2079 NC_010002.1 2273980 2275851 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3475 ABC-type protease/lipase transport system, ATPase and permease components; ABC transporter-like protein complement(2273980..2275851) Delftia acidovorans SPH-1 5747640 YP_001563105.1 CDS Daci_2080 NC_010002.1 2275951 2279244 R PFAM: Mur ligase middle domain protein; KEGG: sit:TM1040_2019 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; Mur ligase middle domain-containing protein complement(2275951..2279244) Delftia acidovorans SPH-1 5747641 YP_001563106.1 CDS Daci_2081 NC_010002.1 2279282 2279806 R PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB; OmpA/MotB domain-containing protein complement(2279282..2279806) Delftia acidovorans SPH-1 5747642 YP_001563107.1 CDS Daci_2082 NC_010002.1 2279889 2285000 R KEGG: bcn:Bcen_6532 PE-PGRS family protein; hypothetical protein complement(2279889..2285000) Delftia acidovorans SPH-1 5747643 YP_001563108.1 CDS Daci_2083 NC_010002.1 2285461 2286843 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: azo:azo1059 conserved hypothetical secreted protein; hypothetical protein 2285461..2286843 Delftia acidovorans SPH-1 5747644 YP_001563109.1 CDS Daci_2084 NC_010002.1 2286843 2288342 D KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG protein 2286843..2288342 Delftia acidovorans SPH-1 5747645 YP_001563110.1 CDS Daci_2085 NC_010002.1 2288400 2288789 R KEGG: mms:mma_1685 hypothetical protein; hypothetical protein complement(2288400..2288789) Delftia acidovorans SPH-1 5747646 YP_001563111.1 CDS Daci_2086 NC_010002.1 2288918 2289994 R PFAM: regulatory protein GntR HTH; KEGG: psb:Psyr_3939 regulatory protein, GntR; GntR family transcriptional regulator complement(2288918..2289994) Delftia acidovorans SPH-1 5747647 YP_001563112.1 CDS Daci_2087 NC_010002.1 2290059 2291249 R KEGG: pfl:PFL_1368 conserved hypothetical protein; hypothetical protein complement(2290059..2291249) Delftia acidovorans SPH-1 5747648 YP_001563113.1 CDS Daci_2088 NC_010002.1 2291273 2292367 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pst:PSPTO_4198 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K complement(2291273..2292367) Delftia acidovorans SPH-1 5747649 YP_001563114.1 CDS Daci_2089 NC_010002.1 2292900 2293658 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2292900..2293658) Delftia acidovorans SPH-1 5747650 YP_001563115.1 CDS Daci_2090 NC_010002.1 2293670 2294446 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_3932 glucose 1-dehydrogenase, putative; short-chain dehydrogenase/reductase SDR complement(2293670..2294446) Delftia acidovorans SPH-1 5747651 YP_001563116.1 CDS Daci_2091 NC_010002.1 2294454 2295899 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3933 major facilitator family transporter; major facilitator transporter complement(2294454..2295899) Delftia acidovorans SPH-1 5747652 YP_001563117.1 CDS Daci_2092 NC_010002.1 2295928 2296803 R PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_1362 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(2295928..2296803) Delftia acidovorans SPH-1 5747653 YP_001563118.1 CDS Daci_2093 NC_010002.1 2296805 2298238 R PFAM: Amidase; KEGG: pfl:PFL_1361 amidase family protein; hypothetical protein complement(2296805..2298238) Delftia acidovorans SPH-1 5747654 YP_001563119.1 CDS Daci_2094 NC_010002.1 2298499 2299026 D hypothetical protein 2298499..2299026 Delftia acidovorans SPH-1 5747655 YP_001563120.1 CDS Daci_2095 NC_010002.1 2299051 2300583 R KEGG: har:HEAR2597 putative membrane protein; putative 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; glycosyltransferase complement(2299051..2300583) Delftia acidovorans SPH-1 5747656 YP_001563121.1 CDS Daci_2096 NC_010002.1 2300931 2301503 R PFAM: Resolvase domain; KEGG: bpd:BURPS668_2984 putative site-specific recombinases, DNA invertase Pin; resolvase domain-containing protein complement(2300931..2301503) Delftia acidovorans SPH-1 5747657 YP_001563122.1 CDS Daci_2097 NC_010002.1 2301747 2302772 R PFAM: Zonular occludens toxin; KEGG: ajs:Ajs_0719 Zonular occludens toxin; zonular occludens toxin complement(2301747..2302772) Delftia acidovorans SPH-1 5747658 YP_001563123.1 CDS Daci_2098 NC_010002.1 2302773 2303063 R KEGG: ajs:Ajs_0720 hypothetical protein; hypothetical protein complement(2302773..2303063) Delftia acidovorans SPH-1 5747659 YP_001563124.1 CDS Daci_2099 NC_010002.1 2303063 2303830 R KEGG: ajs:Ajs_0721 hypothetical protein; hypothetical protein complement(2303063..2303830) Delftia acidovorans SPH-1 5747660 YP_001563125.1 CDS Daci_2100 NC_010002.1 2303871 2304350 R KEGG: ajs:Ajs_0721 hypothetical protein; hypothetical protein complement(2303871..2304350) Delftia acidovorans SPH-1 5747661 YP_001563126.1 CDS Daci_2101 NC_010002.1 2304862 2305083 R hypothetical protein complement(2304862..2305083) Delftia acidovorans SPH-1 5747662 YP_001563127.1 CDS Daci_2102 NC_010002.1 2305412 2305732 R KEGG: ajs:Ajs_0723 conserved hypothetical protein, putative phage associated protein; putative phage associated protein complement(2305412..2305732) Delftia acidovorans SPH-1 5747663 YP_001563128.1 CDS Daci_2103 NC_010002.1 2305753 2306859 R PFAM: replication initiation factor; KEGG: ajs:Ajs_0724 replication initiation factor; replication initiation factor complement(2305753..2306859) Delftia acidovorans SPH-1 5747664 YP_001563129.1 CDS Daci_2104 NC_010002.1 2307642 2307998 R KEGG: ajs:Ajs_0726 hypothetical protein; hypothetical protein complement(2307642..2307998) Delftia acidovorans SPH-1 5747665 YP_001563130.1 CDS Daci_2105 NC_010002.1 2308127 2308426 D KEGG: aav:Aave_2410 hypothetical protein; hypothetical protein 2308127..2308426 Delftia acidovorans SPH-1 5747666 YP_001563131.1 CDS Daci_2106 NC_010002.1 2308601 2310898 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2308601..2310898) Delftia acidovorans SPH-1 5747668 YP_001563132.1 CDS Daci_2107 NC_010002.1 2311084 2312571 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ajs:Ajs_1113 uracil-xanthine permease; xanthine permease complement(2311084..2312571) Delftia acidovorans SPH-1 5747669 YP_001563133.1 CDS Daci_2108 NC_010002.1 2312976 2314268 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ajs:Ajs_1114 peptidase dimerisation domain protein; peptidase dimerisation domain-containing protein complement(2312976..2314268) Delftia acidovorans SPH-1 5747670 YP_001563134.1 CDS Daci_2109 NC_010002.1 2314265 2316040 R KEGG: ajs:Ajs_1115 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; PFAM: peptidase M20; peptidase dimerisation domain protein; unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein complement(2314265..2316040) Delftia acidovorans SPH-1 5747671 YP_001563135.1 CDS Daci_2110 NC_010002.1 2316047 2317003 R KEGG: ajs:Ajs_1117 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein complement(2316047..2317003) Delftia acidovorans SPH-1 5747672 YP_001563136.1 CDS Daci_2111 NC_010002.1 2317000 2317677 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_1118 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2317000..2317677) Delftia acidovorans SPH-1 5747673 YP_001563137.1 CDS Daci_2112 NC_010002.1 2317764 2318687 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1119 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2317764..2318687) Delftia acidovorans SPH-1 5747674 YP_001563138.1 CDS Daci_2113 NC_010002.1 2318812 2319918 D KEGG: ajs:Ajs_1120 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2318812..2319918 Delftia acidovorans SPH-1 5747675 YP_001563139.1 CDS Daci_2114 NC_010002.1 2319971 2320948 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1121 uncharacterized protein UPF0065; hypothetical protein 2319971..2320948 Delftia acidovorans SPH-1 5747676 YP_001563140.1 CDS Daci_2115 NC_010002.1 2321053 2322375 D PFAM: MOFRL domain protein; KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; hydroxypyruvate reductase 2321053..2322375 Delftia acidovorans SPH-1 5747677 YP_001563141.1 CDS Daci_2116 NC_010002.1 2322459 2323376 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4560 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2322459..2323376) Delftia acidovorans SPH-1 5747678 YP_001563142.1 CDS Daci_2117 NC_010002.1 2323498 2325288 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 2323498..2325288 Delftia acidovorans SPH-1 5747679 YP_001563143.1 CDS Daci_2118 NC_010002.1 2325404 2326204 D KEGG: pol:Bpro_4562 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 2325404..2326204 Delftia acidovorans SPH-1 5747680 YP_001563144.1 CDS Daci_2119 NC_010002.1 2326255 2327169 D KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 2326255..2327169 Delftia acidovorans SPH-1 5747681 YP_001563145.1 CDS Daci_2120 NC_010002.1 2327266 2329086 R KEGG: aav:Aave_1114 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(2327266..2329086) Delftia acidovorans SPH-1 5747682 YP_001563146.1 CDS Daci_2121 NC_010002.1 2329426 2329776 D TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: ajs:Ajs_1123 transthyretin; hydroxyisourate hydrolase 2329426..2329776 Delftia acidovorans SPH-1 5747683 YP_001563147.1 CDS Daci_2122 NC_010002.1 2329887 2330276 R PFAM: DoxX family protein; KEGG: rfr:Rfer_0915 DoxX; DoxX family protein complement(2329887..2330276) Delftia acidovorans SPH-1 5747684 YP_001563148.1 CDS Daci_2123 NC_010002.1 2330593 2331177 D KEGG: bbr:BB2045 putative lipoprotein; putative lipoprotein 2330593..2331177 Delftia acidovorans SPH-1 5747685 YP_001563149.1 CDS Daci_2124 NC_010002.1 2331243 2331572 R PFAM: Arc domain protein DNA binding domain protein; KEGG: aav:Aave_1717 Arc domain protein DNA binding domain protein; Arc domain-containing protein complement(2331243..2331572) Delftia acidovorans SPH-1 5747686 YP_001563150.1 CDS Daci_2125 NC_010002.1 2331666 2332055 D hypothetical protein 2331666..2332055 Delftia acidovorans SPH-1 5747687 YP_001563151.1 CDS Daci_2126 NC_010002.1 2332099 2332506 R KEGG: ajs:Ajs_1124 hypothetical protein; hypothetical protein complement(2332099..2332506) Delftia acidovorans SPH-1 5747688 YP_001563152.1 CDS Daci_2127 NC_010002.1 2332718 2333602 D TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pna:Pnap_1013 protein of unknown function DUF182; xanthine dehydrogenase accessory protein XdhC 2332718..2333602 Delftia acidovorans SPH-1 5747689 YP_001563153.1 CDS Daci_2128 NC_010002.1 2333789 2335120 D PFAM: protein of unknown function DUF989; KEGG: ajs:Ajs_1128 protein of unknown function DUF989; hypothetical protein 2333789..2335120 Delftia acidovorans SPH-1 5747690 YP_001563154.1 CDS Daci_2129 NC_010002.1 2335218 2337101 R PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_1120 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(2335218..2337101) Delftia acidovorans SPH-1 5747691 YP_001563155.1 CDS Daci_2130 NC_010002.1 2337299 2337877 D PFAM: regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 2337299..2337877 Delftia acidovorans SPH-1 5747692 YP_001563156.1 CDS Daci_2131 NC_010002.1 2337998 2340280 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1127 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase 2337998..2340280 Delftia acidovorans SPH-1 5747693 YP_001563157.1 CDS Daci_2132 NC_010002.1 2340297 2340992 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: reh:H16_B1187 transcriptional regulator, CRP-family; Crp/FNR family transcriptional regulator complement(2340297..2340992) Delftia acidovorans SPH-1 5747694 YP_001563158.1 CDS Daci_2133 NC_010002.1 2341094 2343385 R KEGG: nca:Noca_4310 hypothetical protein; hypothetical protein complement(2341094..2343385) Delftia acidovorans SPH-1 5747695 YP_001563159.1 CDS Daci_2134 NC_010002.1 2343668 2344600 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1482 transcriptional regulator, LysR family; LysR family transcriptional regulator 2343668..2344600 Delftia acidovorans SPH-1 5747696 YP_001563160.1 CDS Daci_2135 NC_010002.1 2344721 2346322 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3101 ABC transporter related; ABC transporter-like protein 2344721..2346322 Delftia acidovorans SPH-1 5747697 YP_001563161.1 CDS Daci_2136 NC_010002.1 2346309 2347415 D PFAM: inner-membrane translocator; KEGG: aav:Aave_1133 inner-membrane translocator; inner-membrane translocator 2346309..2347415 Delftia acidovorans SPH-1 5747698 YP_001563162.1 CDS Daci_2137 NC_010002.1 2347415 2348335 D PFAM: inner-membrane translocator; KEGG: aav:Aave_1134 inner-membrane translocator; inner-membrane translocator 2347415..2348335 Delftia acidovorans SPH-1 5747699 YP_001563163.1 CDS Daci_2138 NC_010002.1 2348384 2349556 D PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein; basic membrane lipoprotein 2348384..2349556 Delftia acidovorans SPH-1 5747700 YP_001563164.1 CDS Daci_2139 NC_010002.1 2349586 2351016 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ent:Ent638_1862 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2349586..2351016) Delftia acidovorans SPH-1 5747701 YP_001563165.1 CDS Daci_2140 NC_010002.1 2351013 2351693 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ent:Ent638_1861 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2351013..2351693) Delftia acidovorans SPH-1 5747702 YP_001563166.1 CDS Daci_2141 NC_010002.1 2351835 2353304 D PFAM: peptidase S41; KEGG: hch:HCH_04120 periplasmic protease; peptidase S41 2351835..2353304 Delftia acidovorans SPH-1 5747703 YP_001563167.1 CDS Daci_2142 NC_010002.1 2353497 2354654 D PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein; basic membrane lipoprotein 2353497..2354654 Delftia acidovorans SPH-1 5747704 YP_001563168.1 CDS Daci_2143 NC_010002.1 2354731 2355849 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_1136 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2354731..2355849 Delftia acidovorans SPH-1 5747705 YP_001563169.1 CDS Daci_2144 NC_010002.1 2355849 2356898 D KEGG: pna:Pnap_1040 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2355849..2356898 Delftia acidovorans SPH-1 5747706 YP_001563170.1 CDS Daci_2145 NC_010002.1 2356905 2357345 R PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_0004 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2356905..2357345) Delftia acidovorans SPH-1 5747707 YP_001563171.1 CDS Daci_2146 NC_010002.1 2357807 2358913 D PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1142 basic membrane lipoprotein; basic membrane lipoprotein 2357807..2358913 Delftia acidovorans SPH-1 5747708 YP_001563172.1 CDS Daci_2147 NC_010002.1 2358954 2360318 D Catalyzes the deamination of guanine; guanine deaminase 2358954..2360318 Delftia acidovorans SPH-1 5747709 YP_001563173.1 CDS dcd NC_010002.1 2360354 2360959 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2360354..2360959 Delftia acidovorans SPH-1 5747710 YP_001563174.1 CDS Daci_2149 NC_010002.1 2361009 2362508 R KEGG: bxe:Bxe_A0815 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; L-aspartate oxidase complement(2361009..2362508) Delftia acidovorans SPH-1 5747711 YP_001563175.1 CDS Daci_2150 NC_010002.1 2362519 2363652 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2362519..2363652) Delftia acidovorans SPH-1 5747712 YP_001563176.1 CDS Daci_2151 NC_010002.1 2363796 2365547 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: aav:Aave_3998 diguanylate cyclase; diguanylate cyclase complement(2363796..2365547) Delftia acidovorans SPH-1 5747713 YP_001563177.1 CDS Daci_2152 NC_010002.1 2365563 2366510 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(2365563..2366510) Delftia acidovorans SPH-1 5747714 YP_001563178.1 CDS Daci_2153 NC_010002.1 2366603 2366968 D hypothetical protein 2366603..2366968 Delftia acidovorans SPH-1 5747715 YP_001563179.1 CDS Daci_2154 NC_010002.1 2367077 2367955 D PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: aav:Aave_1147 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 2367077..2367955 Delftia acidovorans SPH-1 5747716 YP_001563180.1 CDS Daci_2155 NC_010002.1 2368175 2369689 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ajs:Ajs_1132 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2368175..2369689 Delftia acidovorans SPH-1 5747717 YP_001563181.1 CDS apaH NC_010002.1 2369775 2370620 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(2369775..2370620) Delftia acidovorans SPH-1 5747718 YP_001563182.1 CDS Daci_2157 NC_010002.1 2370645 2371958 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rfr:Rfer_3026 protein of unknown function DUF21; hypothetical protein 2370645..2371958 Delftia acidovorans SPH-1 5747719 YP_001563183.1 CDS Daci_2158 NC_010002.1 2372059 2372349 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: ajs:Ajs_1144 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 2372059..2372349 Delftia acidovorans SPH-1 5747720 YP_001563184.1 CDS Daci_2159 NC_010002.1 2372727 2373935 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding; monooxygenase FAD-binding 2372727..2373935 Delftia acidovorans SPH-1 5747721 YP_001563185.1 CDS Daci_2160 NC_010002.1 2373948 2375249 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_4524 major facilitator superfamily MFS_1; major facilitator transporter complement(2373948..2375249) Delftia acidovorans SPH-1 5747722 YP_001563186.1 CDS Daci_2161 NC_010002.1 2375341 2376216 R TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase complement(2375341..2376216) Delftia acidovorans SPH-1 5747723 YP_001563187.1 CDS Daci_2162 NC_010002.1 2376380 2377300 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2570 probable ADA regulatory of adaptative response contains: methylated-DNA--protein-cysteine methyltransferaseO-6-methylguanine-DNA transcription regulator; AraC family transcriptional regulator 2376380..2377300 Delftia acidovorans SPH-1 5747724 YP_001563188.1 CDS Daci_2163 NC_010002.1 2377297 2378283 D PFAM: HhH-GPD family protein; KEGG: cvi:CV_3195 DNA-3-methyladenine glycosidase II; HhH-GPD family protein 2377297..2378283 Delftia acidovorans SPH-1 5747725 YP_001563189.1 CDS Daci_2164 NC_010002.1 2378301 2379605 R TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: aav:Aave_1156 kynureninase; kynureninase complement(2378301..2379605) Delftia acidovorans SPH-1 5747726 YP_001563190.1 CDS Daci_2165 NC_010002.1 2379680 2380309 R TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: pol:Bpro_3588 putative cyclase; arylformamidase complement(2379680..2380309) Delftia acidovorans SPH-1 5747727 YP_001563191.1 CDS Daci_2166 NC_010002.1 2380314 2381702 R PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C7638 amino acid transporter; amino acid permease-associated protein complement(2380314..2381702) Delftia acidovorans SPH-1 5747728 YP_001563192.1 CDS Daci_2167 NC_010002.1 2381844 2382629 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: ppu:PP_3022 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2381844..2382629) Delftia acidovorans SPH-1 5747729 YP_001563193.1 CDS Daci_2168 NC_010002.1 2382642 2383262 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2303 transporter, LysE family; lysine exporter protein LysE/YggA complement(2382642..2383262) Delftia acidovorans SPH-1 5747730 YP_001563194.1 CDS Daci_2169 NC_010002.1 2383368 2383814 R PFAM: Endoribonuclease L-PSP; KEGG: bur:Bcep18194_B3155 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2383368..2383814) Delftia acidovorans SPH-1 5747731 YP_001563195.1 CDS Daci_2170 NC_010002.1 2383907 2384767 R TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase complement(2383907..2384767) Delftia acidovorans SPH-1 5747732 YP_001563196.1 CDS Daci_2171 NC_010002.1 2384764 2385969 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2384764..2385969) Delftia acidovorans SPH-1 5747733 YP_001563197.1 CDS Daci_2172 NC_010002.1 2386045 2387478 R PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C7638 amino acid transporter; amino acid permease-associated protein complement(2386045..2387478) Delftia acidovorans SPH-1 5747734 YP_001563198.1 CDS Daci_2173 NC_010002.1 2387617 2388087 D PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_1158 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2387617..2388087 Delftia acidovorans SPH-1 5747735 YP_001563199.1 CDS Daci_2174 NC_010002.1 2388135 2388560 R PFAM: protein of unknown function UPF0153; KEGG: aav:Aave_1159 protein of unknown function UPF0153; hypothetical protein complement(2388135..2388560) Delftia acidovorans SPH-1 5747736 YP_001563200.1 CDS Daci_2175 NC_010002.1 2388655 2388996 D PFAM: FeoA family protein; KEGG: aav:Aave_1160 FeoA family protein; FeoA family protein 2388655..2388996 Delftia acidovorans SPH-1 5747737 YP_001563201.1 CDS Daci_2176 NC_010002.1 2388993 2390936 D TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B; ferrous iron transport protein B 2388993..2390936 Delftia acidovorans SPH-1 5747738 YP_001563202.1 CDS Daci_2177 NC_010002.1 2390951 2391145 D KEGG: ajs:Ajs_3005 hypothetical protein; hypothetical protein 2390951..2391145 Delftia acidovorans SPH-1 5747739 YP_001563203.1 CDS Daci_2178 NC_010002.1 2391232 2392164 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2391232..2392164) Delftia acidovorans SPH-1 5747740 YP_001563204.1 CDS Daci_2179 NC_010002.1 2392175 2393371 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(2392175..2393371) Delftia acidovorans SPH-1 5747741 YP_001563205.1 CDS Daci_2180 NC_010002.1 2393722 2394039 D KEGG: aav:Aave_1165 hypothetical protein; hypothetical protein 2393722..2394039 Delftia acidovorans SPH-1 5747742 YP_001563206.1 CDS rpsT NC_010002.1 2394269 2394562 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2394269..2394562) Delftia acidovorans SPH-1 5747743 YP_001563207.1 CDS Daci_2182 NC_010002.1 2394587 2396308 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: ajs:Ajs_2999 integral membrane protein MviN; integral membrane protein MviN 2394587..2396308 Delftia acidovorans SPH-1 5747744 YP_001563208.1 CDS Daci_2183 NC_010002.1 2396367 2397212 D KEGG: vei:Veis_1775 hypothetical protein; hypothetical protein 2396367..2397212 Delftia acidovorans SPH-1 5747745 YP_001563209.1 CDS Daci_2184 NC_010002.1 2397243 2398301 R KEGG: aav:Aave_1969 hypothetical protein; hypothetical protein complement(2397243..2398301) Delftia acidovorans SPH-1 5747746 YP_001563210.1 CDS Daci_2185 NC_010002.1 2398319 2399371 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2398319..2399371) Delftia acidovorans SPH-1 5747747 YP_001563211.1 CDS Daci_2186 NC_010002.1 2399686 2400393 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; DnaA regulatory inactivator Hda 2399686..2400393 Delftia acidovorans SPH-1 5747748 YP_001563212.1 CDS Daci_2187 NC_010002.1 2400482 2401183 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: aav:Aave_1972 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD family hydrolase 2400482..2401183 Delftia acidovorans SPH-1 5747749 YP_001563213.1 CDS Daci_2188 NC_010002.1 2401180 2402769 D KEGG: ajs:Ajs_2991 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 2401180..2402769 Delftia acidovorans SPH-1 5747750 YP_001563214.1 CDS Daci_2189 NC_010002.1 2402744 2403283 D KEGG: aav:Aave_1974 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2402744..2403283 Delftia acidovorans SPH-1 5747751 YP_001563215.1 CDS Daci_2190 NC_010002.1 2403465 2405090 D PFAM: glycosyl transferase family 39; KEGG: bbr:BB4268 hypothetical protein; glycosyl transferase family protein 2403465..2405090 Delftia acidovorans SPH-1 5747752 YP_001563216.1 CDS Daci_2191 NC_010002.1 2405100 2406038 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2989 uncharacterized protein UPF0065; hypothetical protein complement(2405100..2406038) Delftia acidovorans SPH-1 5747753 YP_001563217.1 CDS Daci_2192 NC_010002.1 2406160 2407212 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2406160..2407212) Delftia acidovorans SPH-1 5747754 YP_001563218.1 CDS Daci_2193 NC_010002.1 2407360 2408301 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2407360..2408301 Delftia acidovorans SPH-1 5747755 YP_001563219.1 CDS Daci_2194 NC_010002.1 2408303 2408977 R KEGG: aav:Aave_1979 hypothetical protein; hypothetical protein complement(2408303..2408977) Delftia acidovorans SPH-1 5747756 YP_001563220.1 CDS Daci_2195 NC_010002.1 2409075 2409737 R KEGG: ptr:750122 hypothetical protein LOC750122; hypothetical protein complement(2409075..2409737) Delftia acidovorans SPH-1 5747757 YP_001563221.1 CDS Daci_2196 NC_010002.1 2410294 2410836 D PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: rha:RHA1_ro01631 riboflavin synthase beta subunit; 67-dimethyl-8-ribityllumazine synthase 2410294..2410836 Delftia acidovorans SPH-1 5747758 YP_001563222.1 CDS Daci_2197 NC_010002.1 2411012 2412142 D PFAM: Extracellular ligand-binding receptor; KEGG: aav:Aave_3159 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2411012..2412142 Delftia acidovorans SPH-1 5747759 YP_001563223.1 CDS Daci_2198 NC_010002.1 2412211 2413146 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4580 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2412211..2413146) Delftia acidovorans SPH-1 5747760 YP_001563224.1 CDS Daci_2199 NC_010002.1 2413270 2413923 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: pol:Bpro_4581 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2413270..2413923 Delftia acidovorans SPH-1 5747761 YP_001563225.1 CDS Daci_2200 NC_010002.1 2414003 2414392 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_0668 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2414003..2414392 Delftia acidovorans SPH-1 5747762 YP_001563226.1 CDS Daci_2201 NC_010002.1 2414493 2415716 D PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA4113 probable MFS transporter; sugar efflux transporter 2414493..2415716 Delftia acidovorans SPH-1 5747763 YP_001563227.1 CDS Daci_2202 NC_010002.1 2415723 2416985 R PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0047 MFS transporter; major facilitator transporter complement(2415723..2416985) Delftia acidovorans SPH-1 5747764 YP_001563228.1 CDS Daci_2203 NC_010002.1 2416963 2417424 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: har:HEAR0883 putative guanine deaminase (guanase) (guanine aminase) (guanine aminohydrolase) (GAH) (GDEase); CMP/dCMP deaminase complement(2416963..2417424) Delftia acidovorans SPH-1 5747765 YP_001563229.1 CDS Daci_2204 NC_010002.1 2417500 2418420 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: har:HEAR0881 putative transcriptional regulator; LysR family transcriptional regulator 2417500..2418420 Delftia acidovorans SPH-1 5747766 YP_001563230.1 CDS Daci_2205 NC_010002.1 2418467 2419441 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2981 uncharacterized protein UPF0065; hypothetical protein complement(2418467..2419441) Delftia acidovorans SPH-1 5747767 YP_001563231.1 CDS Daci_2206 NC_010002.1 2419579 2420826 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_2980 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2419579..2420826) Delftia acidovorans SPH-1 5747768 YP_001563232.1 CDS Daci_2207 NC_010002.1 2421016 2422212 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2979 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2421016..2422212) Delftia acidovorans SPH-1 5747769 YP_001563233.1 CDS Daci_2208 NC_010002.1 2422442 2423389 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2978 transcriptional regulator, LysR family; LysR family transcriptional regulator 2422442..2423389 Delftia acidovorans SPH-1 5747770 YP_001563234.1 CDS Daci_2209 NC_010002.1 2423510 2424256 R PFAM: LrgB family protein; KEGG: ajs:Ajs_2977 LrgB family protein; LrgB family protein complement(2423510..2424256) Delftia acidovorans SPH-1 5747771 YP_001563235.1 CDS Daci_2210 NC_010002.1 2424253 2424630 R PFAM: LrgA family protein; KEGG: ajs:Ajs_2976 LrgA family protein; LrgA family protein complement(2424253..2424630) Delftia acidovorans SPH-1 5747772 YP_001563236.1 CDS Daci_2211 NC_010002.1 2424887 2425108 D KEGG: aav:Aave_1984 hypothetical protein; hypothetical protein 2424887..2425108 Delftia acidovorans SPH-1 5747773 YP_001563237.1 CDS cysM NC_010002.1 2425859 2426782 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2425859..2426782 Delftia acidovorans SPH-1 5747775 YP_001563238.1 CDS Daci_2213 NC_010002.1 2426860 2427462 D PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_2899 NUDIX hydrolase; NUDIX hydrolase 2426860..2427462 Delftia acidovorans SPH-1 5747776 YP_001563239.1 CDS Daci_2214 NC_010002.1 2427489 2427716 D PFAM: SirA family protein; KEGG: ajs:Ajs_2898 SirA family protein; SirA family protein 2427489..2427716 Delftia acidovorans SPH-1 5747777 YP_001563240.1 CDS Daci_2215 NC_010002.1 2427802 2428689 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_2897 UTP-glucose-1-phosphate uridylyltransferase GalU; UTP-glucose-1-phosphate uridylyltransferase complement(2427802..2428689) Delftia acidovorans SPH-1 5747778 YP_001563241.1 CDS Daci_2216 NC_010002.1 2428928 2431840 R TIGRFAM: valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase; valyl-tRNA synthetase complement(2428928..2431840) Delftia acidovorans SPH-1 5747779 YP_001563242.1 CDS Daci_2217 NC_010002.1 2431987 2432616 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_1994 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2431987..2432616) Delftia acidovorans SPH-1 5747780 YP_001563243.1 CDS Daci_2218 NC_010002.1 2432863 2433756 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bov:BOV_0501 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 2432863..2433756 Delftia acidovorans SPH-1 5747781 YP_001563244.1 CDS Daci_2219 NC_010002.1 2433795 2434043 D PFAM: protein of unknown function DUF1272; KEGG: ret:RHE_CH03309 probable urease-associated protein; hypothetical protein 2433795..2434043 Delftia acidovorans SPH-1 5747782 YP_001563245.1 CDS Daci_2220 NC_010002.1 2434063 2434416 D hypothetical protein 2434063..2434416 Delftia acidovorans SPH-1 5747783 YP_001563246.1 CDS Daci_2221 NC_010002.1 2434432 2434839 R KEGG: pap:PSPA7_1712 hypothetical protein; hypothetical protein complement(2434432..2434839) Delftia acidovorans SPH-1 5747784 YP_001563247.1 CDS Daci_2222 NC_010002.1 2434860 2435207 R KEGG: bur:Bcep18194_B2580 hypothetical protein; hypothetical protein complement(2434860..2435207) Delftia acidovorans SPH-1 5747785 YP_001563248.1 CDS Daci_2223 NC_010002.1 2435242 2435925 R PFAM: Negative transcriptional regulator; KEGG: aav:Aave_4171 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator complement(2435242..2435925) Delftia acidovorans SPH-1 5747786 YP_001563249.1 CDS Daci_2224 NC_010002.1 2435961 2437493 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reh:H16_B1977 transcriptional regulator, MocR family; transcriptional regulator 2435961..2437493 Delftia acidovorans SPH-1 5747787 YP_001563250.1 CDS Daci_2225 NC_010002.1 2437524 2441714 R TIGRFAM: conserved repeat domain protein; KEGG: mpt:Mpe_B0343 hypothetical protein; hypothetical protein complement(2437524..2441714) Delftia acidovorans SPH-1 5747788 YP_001563251.1 CDS Daci_2226 NC_010002.1 2442026 2442604 R PFAM: YceI family protein; KEGG: pna:Pnap_3578 YceI family protein; hypothetical protein complement(2442026..2442604) Delftia acidovorans SPH-1 5747789 YP_001563252.1 CDS Daci_2227 NC_010002.1 2442674 2443246 R PFAM: YceI family protein; KEGG: aav:Aave_3506 YceI family protein; hypothetical protein complement(2442674..2443246) Delftia acidovorans SPH-1 5747790 YP_001563253.1 CDS Daci_2228 NC_010002.1 2443339 2443932 R PFAM: cytochrome B561; KEGG: aav:Aave_3507 cytochrome b561; cytochrome B561 complement(2443339..2443932) Delftia acidovorans SPH-1 5747791 YP_001563254.1 CDS Daci_2229 NC_010002.1 2444143 2445450 R PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein; HemY domain-containing protein complement(2444143..2445450) Delftia acidovorans SPH-1 5747792 YP_001563255.1 CDS Daci_2230 NC_010002.1 2445470 2446612 R PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX; hypothetical protein complement(2445470..2446612) Delftia acidovorans SPH-1 5747793 YP_001563256.1 CDS Daci_2231 NC_010002.1 2446609 2447418 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: vei:Veis_1039 uroporphyrinogen III synthase; uroporphyrinogen III synthase HEM4 complement(2446609..2447418) Delftia acidovorans SPH-1 5747794 YP_001563257.1 CDS hemC NC_010002.1 2447432 2448370 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2447432..2448370) Delftia acidovorans SPH-1 5747795 YP_001563258.1 CDS Daci_2233 NC_010002.1 2448483 2451332 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 2448483..2451332 Delftia acidovorans SPH-1 5747796 YP_001563259.1 CDS Daci_2234 NC_010002.1 2451435 2453543 D PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: pfl:PFL_3312 phosphotransferase system EIIC domain/EAL domain protein; EAL domain-containing protein 2451435..2453543 Delftia acidovorans SPH-1 5747797 YP_001563260.1 CDS Daci_2235 NC_010002.1 2453595 2454137 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(2453595..2454137) Delftia acidovorans SPH-1 5747798 YP_001563261.1 CDS Daci_2236 NC_010002.1 2454165 2454491 R PFAM: flagellar transcriptional activator; KEGG: aav:Aave_2006 flagellar transcriptional activator, FlhD subunit; flagellar transcriptional activator complement(2454165..2454491) Delftia acidovorans SPH-1 5747799 YP_001563262.1 CDS Daci_2237 NC_010002.1 2454812 2455726 R PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(2454812..2455726) Delftia acidovorans SPH-1 5747800 YP_001563263.1 CDS Daci_2238 NC_010002.1 2455820 2456725 R KEGG: aav:Aave_2011 putative transmembrane protein; putative transmembrane protein complement(2455820..2456725) Delftia acidovorans SPH-1 5747801 YP_001563264.1 CDS Daci_2239 NC_010002.1 2457049 2458188 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(2457049..2458188) Delftia acidovorans SPH-1 5747802 YP_001563265.1 CDS Daci_2240 NC_010002.1 2458529 2458765 D PFAM: Exonuclease VII small subunit; KEGG: aav:Aave_2013 exodeoxyribonuclease VII, small subunit; exonuclease VII small subunit 2458529..2458765 Delftia acidovorans SPH-1 5747803 YP_001563266.1 CDS Daci_2241 NC_010002.1 2458774 2459724 D PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_1037 polyprenyl synthetase; polyprenyl synthetase 2458774..2459724 Delftia acidovorans SPH-1 5747804 YP_001563267.1 CDS Daci_2242 NC_010002.1 2459892 2461808 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2459892..2461808 Delftia acidovorans SPH-1 5747805 YP_001563268.1 CDS Daci_2243 NC_010002.1 2462057 2463139 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 2462057..2463139 Delftia acidovorans SPH-1 5747806 YP_001563269.1 CDS Daci_2244 NC_010002.1 2463422 2464501 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2873 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 2463422..2464501 Delftia acidovorans SPH-1 5747807 YP_001563270.1 CDS Daci_2245 NC_010002.1 2464648 2466477 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2464648..2466477) Delftia acidovorans SPH-1 5747808 YP_001563271.1 CDS Daci_2246 NC_010002.1 2466495 2467103 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vei:Veis_2882 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(2466495..2467103) Delftia acidovorans SPH-1 5747809 YP_001563272.1 CDS Daci_2247 NC_010002.1 2467280 2468446 R PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_1769 putative transcriptional regulator, fis family; Fis family transcriptional regulator complement(2467280..2468446) Delftia acidovorans SPH-1 5747810 YP_001563273.1 CDS Daci_2248 NC_010002.1 2468715 2469191 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: vei:Veis_4544 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 2468715..2469191 Delftia acidovorans SPH-1 5747811 YP_001563274.1 CDS Daci_2249 NC_010002.1 2469221 2471611 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: vei:Veis_4543 carbon-monoxide dehydrogenase (acceptor); aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 2469221..2471611 Delftia acidovorans SPH-1 5747812 YP_001563275.1 CDS Daci_2250 NC_010002.1 2471622 2472413 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: vei:Veis_4542 transcriptional regulator, fis family; carbon-monoxide dehydrogenase 2471622..2472413 Delftia acidovorans SPH-1 5747813 YP_001563276.1 CDS Daci_2251 NC_010002.1 2472422 2473360 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: vei:Veis_4537 ATPase associated with various cellular activities, AAA_5; ATPase 2472422..2473360 Delftia acidovorans SPH-1 5747814 YP_001563277.1 CDS Daci_2252 NC_010002.1 2473357 2474631 D PFAM: VWA containing CoxE family protein; KEGG: vei:Veis_4536 VWA containing CoxE family protein; VWA containing CoxE family protein 2473357..2474631 Delftia acidovorans SPH-1 5747815 YP_001563278.1 CDS Daci_2253 NC_010002.1 2474670 2475401 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: vei:Veis_4535 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 2474670..2475401 Delftia acidovorans SPH-1 5747816 YP_001563279.1 CDS Daci_2254 NC_010002.1 2475686 2476756 D PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 protein of unknown function DUF182; hypothetical protein 2475686..2476756 Delftia acidovorans SPH-1 5747817 YP_001563280.1 CDS Daci_2255 NC_010002.1 2476753 2477139 R KEGG: sco:SCO7641 dehydrogenase; dehydrogenase complement(2476753..2477139) Delftia acidovorans SPH-1 5747818 YP_001563281.1 CDS Daci_2256 NC_010002.1 2477561 2479177 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A0572 secretion protein HlyD; RND family efflux transporter MFP subunit 2477561..2479177 Delftia acidovorans SPH-1 5747819 YP_001563282.1 CDS Daci_2257 NC_010002.1 2479224 2482355 D PFAM: acriflavin resistance protein; KEGG: mms:mma_1683 cation/multidrug efflux pump; acriflavin resistance protein 2479224..2482355 Delftia acidovorans SPH-1 5747820 YP_001563283.1 CDS Daci_2258 NC_010002.1 2482704 2485865 D PFAM: acriflavin resistance protein; KEGG: mms:mma_1682 AcrB/AcrD/AcrF family membrane protein; acriflavin resistance protein 2482704..2485865 Delftia acidovorans SPH-1 5747821 YP_001563284.1 CDS Daci_2259 NC_010002.1 2485862 2487388 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mms:mma_1681 outer membrane protein, TolC-like; RND efflux system outer membrane lipoprotein 2485862..2487388 Delftia acidovorans SPH-1 5747822 YP_001563285.1 CDS Daci_2260 NC_010002.1 2487392 2487757 R KEGG: aav:Aave_2031 hypothetical protein; hypothetical protein complement(2487392..2487757) Delftia acidovorans SPH-1 5747823 YP_001563286.1 CDS Daci_2261 NC_010002.1 2487890 2488543 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0975 ABC-type transport system involved in cytochrome c biogenesis ATPase component-like protein; ABC transporter-like protein 2487890..2488543 Delftia acidovorans SPH-1 5747824 YP_001563287.1 CDS Daci_2262 NC_010002.1 2488581 2489390 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aav:Aave_2035 response regulator receiver protein; LytTR family two component transcriptional regulator complement(2488581..2489390) Delftia acidovorans SPH-1 5747825 YP_001563288.1 CDS Daci_2263 NC_010002.1 2489550 2490659 R PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: aav:Aave_2036 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase LytS complement(2489550..2490659) Delftia acidovorans SPH-1 5747826 YP_001563289.1 CDS Daci_2264 NC_010002.1 2490668 2491003 R KEGG: ajs:Ajs_1151 hypothetical protein; hypothetical protein complement(2490668..2491003) Delftia acidovorans SPH-1 5747827 YP_001563290.1 CDS Daci_2265 NC_010002.1 2491038 2491598 R KEGG: mlo:mlr2123 hypothetical protein; membrane protein complement(2491038..2491598) Delftia acidovorans SPH-1 5747828 YP_001563291.1 CDS Daci_2266 NC_010002.1 2491762 2493936 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_1643 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor 2491762..2493936 Delftia acidovorans SPH-1 5747829 YP_001563292.1 CDS Daci_2267 NC_010002.1 2493955 2495184 D PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3524 hypothetical protein; PepSY-associated TM helix domain-containing protein 2493955..2495184 Delftia acidovorans SPH-1 5747830 YP_001563293.1 CDS Daci_2268 NC_010002.1 2495534 2495857 R PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor; PsiF repeat-containing protein complement(2495534..2495857) Delftia acidovorans SPH-1 5747831 YP_001563294.1 CDS Daci_2269 NC_010002.1 2496006 2496833 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2496006..2496833 Delftia acidovorans SPH-1 5747832 YP_001563295.1 CDS Daci_2270 NC_010002.1 2497042 2499006 D TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_2133 acetoacetyl-CoA synthase; acetoacetyl-CoA synthase 2497042..2499006 Delftia acidovorans SPH-1 5747833 YP_001563296.1 CDS Daci_2271 NC_010002.1 2499135 2499575 D PFAM: regulatory protein MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family; MarR family transcriptional regulator 2499135..2499575 Delftia acidovorans SPH-1 5747834 YP_001563297.1 CDS Daci_2272 NC_010002.1 2499715 2500575 R KEGG: aav:Aave_2045 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2499715..2500575) Delftia acidovorans SPH-1 5747835 YP_001563298.1 CDS Daci_2273 NC_010002.1 2500572 2501630 R KEGG: aav:Aave_2046 20S proteasome, A and B subunits; proteasome-type protease-like protein complement(2500572..2501630) Delftia acidovorans SPH-1 5747836 YP_001563299.1 CDS Daci_2274 NC_010002.1 2501686 2504421 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(2501686..2504421) Delftia acidovorans SPH-1 5747837 YP_001563300.1 CDS Daci_2275 NC_010002.1 2504594 2505388 R hypothetical protein complement(2504594..2505388) Delftia acidovorans SPH-1 5747838 YP_001563301.1 CDS Daci_2276 NC_010002.1 2505611 2506255 D PFAM: helix-turn-helix domain protein; KEGG: bch:Bcen2424_3337 transcriptional regulator, XRE family; XRE family transcriptional regulator 2505611..2506255 Delftia acidovorans SPH-1 5747839 YP_001563302.1 CDS Daci_2277 NC_010002.1 2506410 2507252 D KEGG: tcx:Tcr_0665 hypothetical protein; hypothetical protein 2506410..2507252 Delftia acidovorans SPH-1 5747840 YP_001563303.1 CDS Daci_2278 NC_010002.1 2507249 2508127 D hypothetical protein 2507249..2508127 Delftia acidovorans SPH-1 5747841 YP_001563304.1 CDS Daci_2280 NC_010002.1 2508533 2508958 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(2508533..2508958) Delftia acidovorans SPH-1 5747843 YP_001563305.1 CDS Daci_2281 NC_010002.1 2509125 2509835 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family; GntR family transcriptional regulator complement(2509125..2509835) Delftia acidovorans SPH-1 5747844 YP_001563306.1 CDS Daci_2282 NC_010002.1 2509983 2510969 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065; hypothetical protein 2509983..2510969 Delftia acidovorans SPH-1 5747845 YP_001563307.1 CDS Daci_2283 NC_010002.1 2510985 2511938 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pla:Plav_2454 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 2510985..2511938 Delftia acidovorans SPH-1 5747846 YP_001563308.1 CDS Daci_2284 NC_010002.1 2512029 2513756 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; catalytic; acetolactate synthase catalytic subunit 2512029..2513756 Delftia acidovorans SPH-1 5747847 YP_001563309.1 CDS Daci_2285 NC_010002.1 2513756 2514523 D catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; acetoacetyl-CoA reductase 2513756..2514523 Delftia acidovorans SPH-1 5747848 YP_001563310.1 CDS Daci_2286 NC_010002.1 2514723 2515715 D PFAM: conserved hypothetical protein; KEGG: bbr:BB0335 hypothetical protein; hypothetical protein 2514723..2515715 Delftia acidovorans SPH-1 5747849 YP_001563311.1 CDS Daci_2287 NC_010002.1 2515847 2516563 R TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bbr:BB2781 putative NADPH-dependent FMN reductase; arsenical resistance protein ArsH complement(2515847..2516563) Delftia acidovorans SPH-1 5747850 YP_001563312.1 CDS Daci_2288 NC_010002.1 2516550 2516981 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bbr:BB2782 arsenate reductase; arsenate reductase complement(2516550..2516981) Delftia acidovorans SPH-1 5747851 YP_001563313.1 CDS Daci_2289 NC_010002.1 2517007 2517336 R SMART: regulatory protein ArsR; KEGG: ajs:Ajs_2514 regulatory protein, ArsR; ArsR family transcriptional regulator complement(2517007..2517336) Delftia acidovorans SPH-1 5747852 YP_001563314.1 CDS Daci_2290 NC_010002.1 2517422 2518519 R KEGG: rfr:Rfer_4021 hypothetical protein; hypothetical protein complement(2517422..2518519) Delftia acidovorans SPH-1 5747853 YP_001563315.1 CDS Daci_2291 NC_010002.1 2518599 2519531 R KEGG: hch:HCH_06792 hypothetical protein; hypothetical protein complement(2518599..2519531) Delftia acidovorans SPH-1 5747854 YP_001563316.1 CDS Daci_2292 NC_010002.1 2519590 2520417 R hypothetical protein complement(2519590..2520417) Delftia acidovorans SPH-1 5747855 YP_001563317.1 CDS Daci_2293 NC_010002.1 2520777 2522021 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bur:Bcep18194_A5901 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2520777..2522021 Delftia acidovorans SPH-1 5747856 YP_001563318.1 CDS Daci_2294 NC_010002.1 2522509 2523282 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB1991 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2522509..2523282 Delftia acidovorans SPH-1 5747857 YP_001563319.1 CDS Daci_2295 NC_010002.1 2523328 2524272 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpa:BPP2545 LysR family regulatory protein; LysR family transcriptional regulator 2523328..2524272 Delftia acidovorans SPH-1 5747858 YP_001563320.1 CDS Daci_2296 NC_010002.1 2524226 2525350 R PFAM: fatty acid hydroxylase; KEGG: bvi:Bcep1808_2232 sterol desaturase-like protein; fatty acid hydroxylase complement(2524226..2525350) Delftia acidovorans SPH-1 5747859 YP_001563321.1 CDS Daci_2297 NC_010002.1 2525674 2527794 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: reu:Reut_C6419 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(2525674..2527794) Delftia acidovorans SPH-1 5747860 YP_001563322.1 CDS Daci_2298 NC_010002.1 2527853 2528890 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region; ATPase central domain-containing protein complement(2527853..2528890) Delftia acidovorans SPH-1 5747861 YP_001563323.1 CDS Daci_2300 NC_010002.1 2530033 2530866 D KEGG: bps:BPSL0569 hypothetical protein; hypothetical protein 2530033..2530866 Delftia acidovorans SPH-1 5747863 YP_001563324.1 CDS Daci_2301 NC_010002.1 2530874 2531629 D KEGG: bps:BPSL0570 hypothetical protein; hypothetical protein 2530874..2531629 Delftia acidovorans SPH-1 5747864 YP_001563325.1 CDS Daci_2302 NC_010002.1 2531610 2533295 D KEGG: bps:BPSL0571 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 2531610..2533295 Delftia acidovorans SPH-1 5747865 YP_001563326.1 CDS Daci_2303 NC_010002.1 2533365 2534183 D hypothetical protein 2533365..2534183 Delftia acidovorans SPH-1 5747866 YP_001563327.1 CDS Daci_2304 NC_010002.1 2534597 2534992 R PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_31160 hypothetical protein; XRE family transcriptional regulator complement(2534597..2534992) Delftia acidovorans SPH-1 5747867 YP_001563328.1 CDS Daci_2305 NC_010002.1 2535050 2535433 D hypothetical protein 2535050..2535433 Delftia acidovorans SPH-1 5747868 YP_001563329.1 CDS Daci_2306 NC_010002.1 2535466 2535816 R SMART: regulatory protein ArsR; KEGG: bbr:BB1287 putative regulatory protein; ArsR family transcriptional regulator complement(2535466..2535816) Delftia acidovorans SPH-1 5747869 YP_001563330.1 CDS Daci_2307 NC_010002.1 2536077 2538179 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: ajs:Ajs_0275 translation elongation factor G; translation elongation factor G 2536077..2538179 Delftia acidovorans SPH-1 5747870 YP_001563331.1 CDS Daci_2308 NC_010002.1 2538467 2539654 R PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit complement(2538467..2539654) Delftia acidovorans SPH-1 5747871 YP_001563332.1 CDS Daci_2309 NC_010002.1 2539932 2540846 R PFAM: inositol monophosphatase; KEGG: ajs:Ajs_1045 inositol-phosphate phosphatase; inositol-phosphate phosphatase complement(2539932..2540846) Delftia acidovorans SPH-1 5747872 YP_001563333.1 CDS Daci_2310 NC_010002.1 2541063 2541890 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ajs:Ajs_1046 RNA methyltransferase, TrmH family, group 1; tRNA/rRNA methyltransferase SpoU 2541063..2541890 Delftia acidovorans SPH-1 5747873 YP_001563334.1 CDS Daci_2311 NC_010002.1 2541926 2542750 D TIGRFAM: serine O-acetyltransferase; KEGG: aav:Aave_2076 serine O-acetyltransferase; serine O-acetyltransferase 2541926..2542750 Delftia acidovorans SPH-1 5747874 YP_001563335.1 CDS Daci_2312 NC_010002.1 2542813 2543475 D PFAM: nitroreductase; KEGG: ajs:Ajs_1048 nitroreductase; nitroreductase 2542813..2543475 Delftia acidovorans SPH-1 5747875 YP_001563336.1 CDS Daci_2313 NC_010002.1 2543930 2545873 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2543930..2545873 Delftia acidovorans SPH-1 5747876 YP_001563337.1 CDS Daci_2314 NC_010002.1 2546209 2547261 D PFAM: porin Gram-negative type; KEGG: rso:RSc2760 putative porin signal peptide protein; porin 2546209..2547261 Delftia acidovorans SPH-1 5747877 YP_001563338.1 CDS Daci_2315 NC_010002.1 2547285 2548670 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B0723 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2547285..2548670) Delftia acidovorans SPH-1 5747878 YP_001563339.1 CDS Daci_2316 NC_010002.1 2548672 2550618 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: shn:Shewana3_3455 ABC transporter related; ABC transporter-like protein complement(2548672..2550618) Delftia acidovorans SPH-1 5747879 YP_001563340.1 CDS Daci_2317 NC_010002.1 2550621 2551802 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bpl:BURPS1106A_A0836 macrolide efflux protein MacA; RND family efflux transporter MFP subunit complement(2550621..2551802) Delftia acidovorans SPH-1 5747880 YP_001563341.1 CDS Daci_2318 NC_010002.1 2551992 2553203 R KEGG: aav:Aave_1283 putative substrate-binding periplasmic (pbp) ABC transporter protein; putative substrate-binding periplasmic (pbp) ABC transporter protein complement(2551992..2553203) Delftia acidovorans SPH-1 5747881 YP_001563342.1 CDS Daci_2319 NC_010002.1 2553526 2554212 D PFAM: helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 transcriptional regulator, XRE family; XRE family transcriptional regulator 2553526..2554212 Delftia acidovorans SPH-1 5747882 YP_001563343.1 CDS Daci_2320 NC_010002.1 2554193 2554729 D KEGG: reh:H16_B0351 conserved hypothetical protein; hypothetical protein 2554193..2554729 Delftia acidovorans SPH-1 5747883 YP_001563344.1 CDS Daci_2321 NC_010002.1 2554773 2555378 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1051 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein complement(2554773..2555378) Delftia acidovorans SPH-1 5747884 YP_001563345.1 CDS Daci_2322 NC_010002.1 2555371 2556048 R PFAM: protein of unknown function DUF615; KEGG: aav:Aave_2078 protein of unknown function DUF615; hypothetical protein complement(2555371..2556048) Delftia acidovorans SPH-1 5747885 YP_001563346.1 CDS Daci_2323 NC_010002.1 2556115 2557524 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ajs:Ajs_1053 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 2556115..2557524 Delftia acidovorans SPH-1 5747886 YP_001563347.1 CDS Daci_2324 NC_010002.1 2557579 2558418 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pde:Pden_2753 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2557579..2558418) Delftia acidovorans SPH-1 5747887 YP_001563348.1 CDS Daci_2325 NC_010002.1 2558777 2560504 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_4495 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2558777..2560504 Delftia acidovorans SPH-1 5747888 YP_001563349.1 CDS Daci_2326 NC_010002.1 2560559 2563942 R PFAM: MscS Mechanosensitive ion channel; KEGG: pmy:Pmen_0559 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(2560559..2563942) Delftia acidovorans SPH-1 5747889 YP_001563350.1 CDS Daci_2327 NC_010002.1 2564315 2566237 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mpt:Mpe_A3779 hypothetical protein; putative serine protein kinase PrkA 2564315..2566237 Delftia acidovorans SPH-1 5747890 YP_001563351.1 CDS Daci_2328 NC_010002.1 2566284 2567552 D PFAM: protein of unknown function DUF444; KEGG: mpt:Mpe_A3778 hypothetical protein; hypothetical protein 2566284..2567552 Delftia acidovorans SPH-1 5747891 YP_001563352.1 CDS Daci_2329 NC_010002.1 2567549 2569177 D PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein; SpoVR family protein 2567549..2569177 Delftia acidovorans SPH-1 5747892 YP_001563353.1 CDS Daci_2330 NC_010002.1 2569190 2569498 R KEGG: rme:Rmet_1299 hypothetical protein; hypothetical protein complement(2569190..2569498) Delftia acidovorans SPH-1 5747893 YP_001563354.1 CDS Daci_2331 NC_010002.1 2569561 2570901 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pna:Pnap_0178 ammonium transporter; ammonium transporter complement(2569561..2570901) Delftia acidovorans SPH-1 5747894 YP_001563355.1 CDS Daci_2332 NC_010002.1 2571131 2571931 D PFAM: penicillin-binding protein transpeptidase; KEGG: syn:slr0319 beta-lactamase; beta-lactamase 2571131..2571931 Delftia acidovorans SPH-1 5747895 YP_001563356.1 CDS Daci_2333 NC_010002.1 2571986 2572726 R PFAM: protein of unknown function DUF159; KEGG: pna:Pnap_1661 protein of unknown function DUF159; hypothetical protein complement(2571986..2572726) Delftia acidovorans SPH-1 5747896 YP_001563357.1 CDS Daci_2334 NC_010002.1 2572796 2573641 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: psa:PST_2727 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein complement(2572796..2573641) Delftia acidovorans SPH-1 5747897 YP_001563358.1 CDS Daci_2335 NC_010002.1 2573801 2575465 R KEGG: saz:Sama_0272 hypothetical protein; hypothetical protein complement(2573801..2575465) Delftia acidovorans SPH-1 5747898 YP_001563359.1 CDS Daci_2336 NC_010002.1 2575642 2576610 D PFAM: regulatory protein LuxR; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2575642..2576610 Delftia acidovorans SPH-1 5747899 YP_001563360.1 CDS Daci_2337 NC_010002.1 2576693 2577292 D PFAM: regulatory protein TetR; KEGG: tbd:Tbd_1984 possible transcriptional regulator, TetR family; TetR family transcriptional regulator 2576693..2577292 Delftia acidovorans SPH-1 5747900 YP_001563361.1 CDS Daci_2338 NC_010002.1 2577371 2578561 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bpd:BURPS668_1706 oxidoreductase, pyridine nucleotide-disulphide family; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2577371..2578561 Delftia acidovorans SPH-1 5747901 YP_001563362.1 CDS Daci_2339 NC_010002.1 2578613 2579041 D PFAM: protein of unknown function DUF1641; KEGG: pfl:PFL_1327 hypothetical protein; hypothetical protein 2578613..2579041 Delftia acidovorans SPH-1 5747902 YP_001563363.1 CDS Daci_2340 NC_010002.1 2579226 2580137 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_1054 protein of unknown function DUF6, transmembrane; hypothetical protein 2579226..2580137 Delftia acidovorans SPH-1 5747903 YP_001563364.1 CDS Daci_2341 NC_010002.1 2580382 2580708 D KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 2580382..2580708 Delftia acidovorans SPH-1 5747904 YP_001563365.1 CDS Daci_2342 NC_010002.1 2580705 2582357 D KEGG: bbr:BB4741 putative iron-regulated membrane protein; putative iron-regulated membrane protein 2580705..2582357 Delftia acidovorans SPH-1 5747905 YP_001563366.1 CDS Daci_2343 NC_010002.1 2582354 2582686 D KEGG: bbr:BB4740 hypothetical protein; hypothetical protein 2582354..2582686 Delftia acidovorans SPH-1 5747906 YP_001563367.1 CDS Daci_2344 NC_010002.1 2582952 2584163 D TIGRFAM: extracellular repeat protein, HAF family; KEGG: fra:Francci3_4152 hypothetical protein; HAF family protein 2582952..2584163 Delftia acidovorans SPH-1 5747907 YP_001563368.1 CDS Daci_2345 NC_010002.1 2584559 2585365 R KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(2584559..2585365) Delftia acidovorans SPH-1 5747908 YP_001563369.1 CDS Daci_2346 NC_010002.1 2585396 2586883 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: aav:Aave_2081 succinic semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(2585396..2586883) Delftia acidovorans SPH-1 5747909 YP_001563370.1 CDS Daci_2347 NC_010002.1 2586918 2588447 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: aav:Aave_2082 galactarate dehydratase; galactarate dehydratase complement(2586918..2588447) Delftia acidovorans SPH-1 5747910 YP_001563371.1 CDS Daci_2348 NC_010002.1 2588481 2589476 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_2083 uncharacterized protein UPF0065; hypothetical protein complement(2588481..2589476) Delftia acidovorans SPH-1 5747911 YP_001563372.1 CDS Daci_2349 NC_010002.1 2589614 2590585 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2084 transcriptional regulator, LysR family; LysR family transcriptional regulator 2589614..2590585 Delftia acidovorans SPH-1 5747912 YP_001563373.1 CDS Daci_2350 NC_010002.1 2591338 2591745 D hypothetical protein 2591338..2591745 Delftia acidovorans SPH-1 5747913 YP_001563374.1 CDS Daci_2351 NC_010002.1 2591774 2592217 D hypothetical protein 2591774..2592217 Delftia acidovorans SPH-1 5747914 YP_001563375.1 CDS Daci_2352 NC_010002.1 2592394 2592714 R PFAM: ferredoxin; KEGG: pla:Plav_2520 ferredoxin; ferredoxin complement(2592394..2592714) Delftia acidovorans SPH-1 5747915 YP_001563376.1 CDS Daci_2353 NC_010002.1 2592711 2593946 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: ccr:CC_3525 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2592711..2593946) Delftia acidovorans SPH-1 5747916 YP_001563377.1 CDS Daci_2354 NC_010002.1 2593943 2594995 R KEGG: mms:mma_1224 hypothetical protein; hypothetical protein complement(2593943..2594995) Delftia acidovorans SPH-1 5747917 YP_001563378.1 CDS Daci_2355 NC_010002.1 2595564 2595908 R hypothetical protein complement(2595564..2595908) Delftia acidovorans SPH-1 5747918 YP_001563379.1 CDS Daci_2356 NC_010002.1 2596027 2597424 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ecp:ECP_3590 glutathione reductase; glutathione-disulfide reductase complement(2596027..2597424) Delftia acidovorans SPH-1 5747919 YP_001563380.1 CDS Daci_2357 NC_010002.1 2597489 2599075 R KEGG: pau:PA14_13330 putative phosphatase or phosphodiesterase; putative phosphatase or phosphodiesterase complement(2597489..2599075) Delftia acidovorans SPH-1 5747920 YP_001563381.1 CDS Daci_2358 NC_010002.1 2599207 2600451 D KEGG: bxe:Bxe_B0543 hypothetical protein; hypothetical protein 2599207..2600451 Delftia acidovorans SPH-1 5747921 YP_001563382.1 CDS Daci_2359 NC_010002.1 2600484 2601140 D KEGG: reu:Reut_A3203 hypothetical protein; hypothetical protein 2600484..2601140 Delftia acidovorans SPH-1 5747922 YP_001563383.1 CDS Daci_2360 NC_010002.1 2601144 2602232 R KEGG: ajs:Ajs_2860 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(2601144..2602232) Delftia acidovorans SPH-1 5747923 YP_001563384.1 CDS Daci_2361 NC_010002.1 2602297 2603277 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2088 transcriptional regulator, LysR family; LysR family transcriptional regulator 2602297..2603277 Delftia acidovorans SPH-1 5747924 YP_001563385.1 CDS Daci_2362 NC_010002.1 2603303 2603749 R KEGG: aav:Aave_2091 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(2603303..2603749) Delftia acidovorans SPH-1 5747925 YP_001563386.1 CDS rpsU NC_010002.1 2603872 2604084 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2603872..2604084) Delftia acidovorans SPH-1 5747926 YP_001563387.1 CDS Daci_2364 NC_010002.1 2604250 2605470 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2846 HI0933 family protein; hypothetical protein complement(2604250..2605470) Delftia acidovorans SPH-1 5747927 YP_001563388.1 CDS Daci_2365 NC_010002.1 2605537 2606043 D PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2844 thioesterase superfamily protein; thioesterase superfamily protein 2605537..2606043 Delftia acidovorans SPH-1 5747928 YP_001563389.1 CDS Daci_2366 NC_010002.1 2606030 2608123 R KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase complement(2606030..2608123) Delftia acidovorans SPH-1 5747929 YP_001563390.1 CDS Daci_2367 NC_010002.1 2608148 2609071 R SMART: extracellular solute-binding protein family 3; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; extracellular solute-binding protein complement(2608148..2609071) Delftia acidovorans SPH-1 5747930 YP_001563391.1 CDS Daci_2368 NC_010002.1 2609221 2610033 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_2843 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(2609221..2610033) Delftia acidovorans SPH-1 5747931 YP_001563392.1 CDS Daci_2369 NC_010002.1 2610061 2611011 R PFAM: glycosyl transferase family 3; KEGG: ajs:Ajs_2842 glycosyl transferase, family 3; glycosyl transferase family protein complement(2610061..2611011) Delftia acidovorans SPH-1 5747932 YP_001563393.1 CDS Daci_2370 NC_010002.1 2611061 2613925 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2841 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(2611061..2613925) Delftia acidovorans SPH-1 5747933 YP_001563394.1 CDS Daci_2371 NC_010002.1 2613976 2615256 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2839 nitrite reductase (NAD(P)H), large subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2613976..2615256) Delftia acidovorans SPH-1 5747934 YP_001563395.1 CDS Daci_2372 NC_010002.1 2615672 2617411 D KEGG: aav:Aave_2113 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 2615672..2617411 Delftia acidovorans SPH-1 5747935 YP_001563396.1 CDS Daci_2373 NC_010002.1 2617542 2618195 D KEGG: ajs:Ajs_2835 hypothetical protein; hypothetical protein 2617542..2618195 Delftia acidovorans SPH-1 5747936 YP_001563397.1 CDS Daci_2374 NC_010002.1 2618318 2618758 D PFAM: CBS domain containing protein; KEGG: aav:Aave_2114 CBS domain containing membrane protein; signal-transduction protein 2618318..2618758 Delftia acidovorans SPH-1 5747937 YP_001563398.1 CDS Daci_2375 NC_010002.1 2618819 2619625 R KEGG: ajs:Ajs_2833 nitrate ABC transporter, ATPase subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(2618819..2619625) Delftia acidovorans SPH-1 5747938 YP_001563399.1 CDS Daci_2376 NC_010002.1 2619622 2620563 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2146 nitrate ABC transporter, inner membrane subunit; nitrate ABC transporter inner membrane subunit complement(2619622..2620563) Delftia acidovorans SPH-1 5747939 YP_001563400.1 CDS Daci_2377 NC_010002.1 2620604 2621884 R KEGG: ajs:Ajs_2831 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(2620604..2621884) Delftia acidovorans SPH-1 5747940 YP_001563401.1 CDS Daci_2378 NC_010002.1 2622194 2623459 R PFAM: ANTAR domain protein; Nitrate and nitrite sensing domain protein; KEGG: azo:azo0941 probable nitrate regulatory protein; response regulator receiver/ANTAR domain-containing protein complement(2622194..2623459) Delftia acidovorans SPH-1 5747941 YP_001563402.1 CDS Daci_2379 NC_010002.1 2623792 2625513 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_1490 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2623792..2625513 Delftia acidovorans SPH-1 5747942 YP_001563403.1 CDS Daci_2380 NC_010002.1 2625604 2626644 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2625604..2626644 Delftia acidovorans SPH-1 5747943 YP_001563404.1 CDS Daci_2381 NC_010002.1 2626825 2627205 R KEGG: vei:Veis_1656 heat shock protein HSP20; heat shock protein HSP20 complement(2626825..2627205) Delftia acidovorans SPH-1 5747944 YP_001563405.1 CDS Daci_2382 NC_010002.1 2627304 2628614 D KEGG: aav:Aave_2154 putative transporter signal peptide protein; putative transporter signal peptide protein 2627304..2628614 Delftia acidovorans SPH-1 5747945 YP_001563406.1 CDS Daci_2383 NC_010002.1 2628642 2629820 R TIGRFAM: lytic murein transglycosylase B; KEGG: ajs:Ajs_2817 lytic murein transglycosylase B; lytic murein transglycosylase B complement(2628642..2629820) Delftia acidovorans SPH-1 5747946 YP_001563407.1 CDS Daci_2384 NC_010002.1 2629817 2631997 R PFAM: transglutaminase domain protein; KEGG: ajs:Ajs_2816 transglutaminase domain protein; transglutaminase domain-containing protein complement(2629817..2631997) Delftia acidovorans SPH-1 5747947 YP_001563408.1 CDS Daci_2385 NC_010002.1 2631994 2633028 R PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 protein of unknown function DUF58; hypothetical protein complement(2631994..2633028) Delftia acidovorans SPH-1 5747948 YP_001563409.1 CDS Daci_2386 NC_010002.1 2633028 2633948 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_2814 ATPase associated with various cellular activities, AAA_3; ATPase complement(2633028..2633948) Delftia acidovorans SPH-1 5747949 YP_001563410.1 CDS Daci_2387 NC_010002.1 2633991 2634944 D PFAM: histone deacetylase superfamily; KEGG: aav:Aave_2164 histone deacetylase superfamily; histone deacetylase superfamily protein 2633991..2634944 Delftia acidovorans SPH-1 5747950 YP_001563411.1 CDS Daci_2388 NC_010002.1 2634962 2635771 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2634962..2635771 Delftia acidovorans SPH-1 5747951 YP_001563412.1 CDS Daci_2389 NC_010002.1 2635864 2637153 D PFAM: MscS Mechanosensitive ion channel; KEGG: aav:Aave_2167 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2635864..2637153 Delftia acidovorans SPH-1 5747952 YP_001563413.1 CDS Daci_2390 NC_010002.1 2637363 2638112 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_2810 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 2637363..2638112 Delftia acidovorans SPH-1 5747953 YP_001563414.1 CDS Daci_2391 NC_010002.1 2638126 2639058 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2638126..2639058 Delftia acidovorans SPH-1 5747954 YP_001563415.1 CDS Daci_2392 NC_010002.1 2639213 2640355 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4388 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2639213..2640355 Delftia acidovorans SPH-1 5747955 YP_001563416.1 CDS Daci_2393 NC_010002.1 2640453 2642243 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2808 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2640453..2642243 Delftia acidovorans SPH-1 5747956 YP_001563417.1 CDS Daci_2394 NC_010002.1 2642304 2643263 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2642304..2643263 Delftia acidovorans SPH-1 5747957 YP_001563418.1 CDS Daci_2395 NC_010002.1 2643499 2645196 D KEGG: mms:mma_2016 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein 2643499..2645196 Delftia acidovorans SPH-1 5747958 YP_001563419.1 CDS Daci_2396 NC_010002.1 2645193 2646878 D KEGG: mms:mma_2015 ATP-binding component of cytochrome-related transport system; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein 2645193..2646878 Delftia acidovorans SPH-1 5747959 YP_001563420.1 CDS Daci_2397 NC_010002.1 2646921 2648507 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: oan:Oant_3541 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 2646921..2648507 Delftia acidovorans SPH-1 5747960 YP_001563421.1 CDS Daci_2398 NC_010002.1 2648526 2649677 D KEGG: har:HEAR1375 cytochrome d terminal oxidase, polypeptide subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 2648526..2649677 Delftia acidovorans SPH-1 5747961 YP_001563422.1 CDS Daci_2399 NC_010002.1 2649727 2649852 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: har:HEAR1376 conserved hypothetical protein: putative YbgT protein of unknown function; putative signal peptide; cyd operon protein YbgT 2649727..2649852 Delftia acidovorans SPH-1 5747962 YP_001563423.1 CDS Daci_2400 NC_010002.1 2650052 2650648 R KEGG: mpt:Mpe_A2572 putative transcriptional regulator ArsR family; ArsR family transcriptional regulator complement(2650052..2650648) Delftia acidovorans SPH-1 5747963 YP_001563424.1 CDS Daci_2401 NC_010002.1 2650810 2651967 D PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3; acyltransferase 3 2650810..2651967 Delftia acidovorans SPH-1 5747964 YP_001563425.1 CDS Daci_2402 NC_010002.1 2652041 2652445 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(2652041..2652445) Delftia acidovorans SPH-1 5747965 YP_001563426.1 CDS Daci_2403 NC_010002.1 2652713 2653882 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aav:Aave_2176 radical SAM domain protein; radical SAM domain-containing protein 2652713..2653882 Delftia acidovorans SPH-1 5747966 YP_001563427.1 CDS Daci_2404 NC_010002.1 2653920 2654795 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB2682 probable LysR-family transcriptional regulator; LysR family transcriptional regulator complement(2653920..2654795) Delftia acidovorans SPH-1 5747967 YP_001563428.1 CDS Daci_2405 NC_010002.1 2654893 2656017 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bbr:BB2683 putative racemase; mandelate racemase/muconate lactonizing protein 2654893..2656017 Delftia acidovorans SPH-1 5747968 YP_001563429.1 CDS Daci_2406 NC_010002.1 2656053 2657027 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2752 uncharacterized protein UPF0065; hypothetical protein 2656053..2657027 Delftia acidovorans SPH-1 5747969 YP_001563430.1 CDS Daci_2407 NC_010002.1 2657059 2657910 R PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2552 transcriptional regulator, LysR family; MarR family transcriptional regulator complement(2657059..2657910) Delftia acidovorans SPH-1 5747970 YP_001563431.1 CDS Daci_2408 NC_010002.1 2657942 2658979 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: tbd:Tbd_2300 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2657942..2658979 Delftia acidovorans SPH-1 5747971 YP_001563432.1 CDS Daci_2409 NC_010002.1 2658976 2659854 D KEGG: tbd:Tbd_2299 ABC phosphate/phosphonate transport system ATPase; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase 2658976..2659854 Delftia acidovorans SPH-1 5747972 YP_001563433.1 CDS Daci_2410 NC_010002.1 2659722 2660735 R KEGG: bpm:BURPS1710b_A1869 hypothetical protein; hypothetical protein complement(2659722..2660735) Delftia acidovorans SPH-1 5747973 YP_001563434.1 CDS Daci_2411 NC_010002.1 2660747 2661835 D TIGRFAM: phosphonate metabolism-associated iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; KEGG: reh:H16_B0831 alcohol dehydrogenase, class IV; phosphonate metabolism-associated iron-containing alcohol dehydrogenase 2660747..2661835 Delftia acidovorans SPH-1 5747974 YP_001563435.1 CDS Daci_2412 NC_010002.1 2661890 2662735 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 2661890..2662735 Delftia acidovorans SPH-1 5747975 YP_001563436.1 CDS Daci_2413 NC_010002.1 2662863 2663735 R KEGG: ajs:Ajs_2801 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(2662863..2663735) Delftia acidovorans SPH-1 5747976 YP_001563437.1 CDS Daci_2414 NC_010002.1 2663984 2665093 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_2800 alcohol dehydrogenase, zinc-binding domain protein; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(2663984..2665093) Delftia acidovorans SPH-1 5747977 YP_001563438.1 CDS Daci_2415 NC_010002.1 2665332 2666369 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: aav:Aave_2196 transcriptional regulator, AraC family; AraC family transcriptional regulator 2665332..2666369 Delftia acidovorans SPH-1 5747978 YP_001563439.1 CDS Daci_2416 NC_010002.1 2666381 2667697 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_1567 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2666381..2667697) Delftia acidovorans SPH-1 5747979 YP_001563440.1 CDS Daci_2417 NC_010002.1 2667819 2669258 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_B2011 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2667819..2669258) Delftia acidovorans SPH-1 5747980 YP_001563441.1 CDS Daci_2418 NC_010002.1 2669255 2672554 R PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B2010 cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND superfamily; acriflavin resistance protein complement(2669255..2672554) Delftia acidovorans SPH-1 5747981 YP_001563442.1 CDS Daci_2419 NC_010002.1 2672551 2675712 R PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_B2009 cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND superfamily; acriflavin resistance protein complement(2672551..2675712) Delftia acidovorans SPH-1 5747982 YP_001563443.1 CDS Daci_2420 NC_010002.1 2675764 2677029 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B2008 RND efflux pump, membrane fusion protein, CzcB subfamily; RND family efflux transporter MFP subunit complement(2675764..2677029) Delftia acidovorans SPH-1 5747983 YP_001563444.1 CDS Daci_2421 NC_010002.1 2677083 2677379 R KEGG: aav:Aave_4248 N-acetylmuramoyl-L-alanine amidase, family 2; hypothetical protein complement(2677083..2677379) Delftia acidovorans SPH-1 5747984 YP_001563445.1 CDS gltA NC_010002.1 2677584 2678894 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(2677584..2678894) Delftia acidovorans SPH-1 5747985 YP_001563446.1 CDS Daci_2423 NC_010002.1 2678920 2679219 R KEGG: aav:Aave_2200 protein of unknown function DUF339; hypothetical protein complement(2678920..2679219) Delftia acidovorans SPH-1 5747986 YP_001563447.1 CDS Daci_2424 NC_010002.1 2679219 2679923 R KEGG: ajs:Ajs_2796 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(2679219..2679923) Delftia acidovorans SPH-1 5747987 YP_001563448.1 CDS Daci_2425 NC_010002.1 2679951 2681756 R KEGG: ajs:Ajs_2795 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit complement(2679951..2681756) Delftia acidovorans SPH-1 5747988 YP_001563449.1 CDS Daci_2426 NC_010002.1 2681790 2682155 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: ajs:Ajs_2794 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein complement(2681790..2682155) Delftia acidovorans SPH-1 5747989 YP_001563450.1 CDS Daci_2427 NC_010002.1 2682192 2682614 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: ajs:Ajs_2793 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit complement(2682192..2682614) Delftia acidovorans SPH-1 5747990 YP_001563451.1 CDS Daci_2428 NC_010002.1 2682749 2683537 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aav:Aave_2205 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2682749..2683537) Delftia acidovorans SPH-1 5747991 YP_001563452.1 CDS Daci_2429 NC_010002.1 2683756 2684742 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 2683756..2684742 Delftia acidovorans SPH-1 5747992 YP_001563453.1 CDS Daci_2430 NC_010002.1 2684757 2685563 D catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 2684757..2685563 Delftia acidovorans SPH-1 5747993 YP_001563454.1 CDS Daci_2431 NC_010002.1 2685560 2686579 D PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_2208 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2685560..2686579 Delftia acidovorans SPH-1 5747994 YP_001563455.1 CDS Daci_2432 NC_010002.1 2686611 2687201 D KEGG: ajs:Ajs_2788 hypothetical protein; hypothetical protein 2686611..2687201 Delftia acidovorans SPH-1 5747995 YP_001563456.1 CDS Daci_2433 NC_010002.1 2687265 2689856 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2687265..2689856 Delftia acidovorans SPH-1 5747996 YP_001563457.1 CDS Daci_2434 NC_010002.1 2690004 2690255 D KEGG: xfa:XF2031 plasmid stabilization protein; plasmid stabilization protein 2690004..2690255 Delftia acidovorans SPH-1 5747997 YP_001563458.1 CDS Daci_2435 NC_010002.1 2690252 2690542 D PFAM: plasmid stabilization system; KEGG: xfa:XF2032 plasmid stabilization protein; plasmid stabilization system protein 2690252..2690542 Delftia acidovorans SPH-1 5747998 YP_001563459.1 CDS Daci_2436 NC_010002.1 2690557 2690760 R hypothetical protein complement(2690557..2690760) Delftia acidovorans SPH-1 5747999 YP_001563460.1 CDS Daci_2437 NC_010002.1 2690757 2691281 R KEGG: eba:ebA2161 hypothetical protein; hypothetical protein complement(2690757..2691281) Delftia acidovorans SPH-1 5748000 YP_001563461.1 CDS Daci_2438 NC_010002.1 2691325 2692245 R PFAM: helix-turn-helix domain protein; KEGG: aav:Aave_2212 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2691325..2692245) Delftia acidovorans SPH-1 5748001 YP_001563462.1 CDS Daci_2439 NC_010002.1 2692287 2692712 D KEGG: aav:Aave_2213 hypothetical protein; hypothetical protein 2692287..2692712 Delftia acidovorans SPH-1 5748002 YP_001563463.1 CDS Daci_2440 NC_010002.1 2693054 2693326 R hypothetical protein complement(2693054..2693326) Delftia acidovorans SPH-1 5748003 YP_001563464.1 CDS Daci_2441 NC_010002.1 2693864 2696749 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2693864..2696749 Delftia acidovorans SPH-1 5748004 YP_001563465.1 CDS Daci_2442 NC_010002.1 2696892 2697791 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1842 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2696892..2697791) Delftia acidovorans SPH-1 5748005 YP_001563466.1 CDS Daci_2443 NC_010002.1 2697928 2699631 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1884 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2697928..2699631 Delftia acidovorans SPH-1 5748006 YP_001563467.1 CDS Daci_2444 NC_010002.1 2699707 2700711 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1840 uncharacterized protein UPF0065; hypothetical protein 2699707..2700711 Delftia acidovorans SPH-1 5748007 YP_001563468.1 CDS Daci_2445 NC_010002.1 2700869 2701984 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B0089 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2700869..2701984 Delftia acidovorans SPH-1 5748008 YP_001563469.1 CDS Daci_2446 NC_010002.1 2701992 2703647 R KEGG: azo:azo0658 hypothetical membrane protein; hypothetical protein complement(2701992..2703647) Delftia acidovorans SPH-1 5748009 YP_001563470.1 CDS Daci_2447 NC_010002.1 2703644 2704699 R KEGG: azo:azo0657 hypothetical protein; hypothetical protein complement(2703644..2704699) Delftia acidovorans SPH-1 5748010 YP_001563471.1 CDS Daci_2448 NC_010002.1 2704875 2705408 D KEGG: aba:Acid345_0330 hypothetical protein; hypothetical protein 2704875..2705408 Delftia acidovorans SPH-1 5748011 YP_001563472.1 CDS Daci_2449 NC_010002.1 2705545 2707014 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: aav:Aave_1527 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase accessory protein CcoG 2705545..2707014 Delftia acidovorans SPH-1 5748012 YP_001563473.1 CDS Daci_2450 NC_010002.1 2707160 2709136 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2707160..2709136 Delftia acidovorans SPH-1 5748013 YP_001563474.1 CDS Daci_2451 NC_010002.1 2709217 2710209 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal; hypothetical protein 2709217..2710209 Delftia acidovorans SPH-1 5748014 YP_001563475.1 CDS Daci_2452 NC_010002.1 2710348 2711535 R PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit complement(2710348..2711535) Delftia acidovorans SPH-1 5748015 YP_001563476.1 CDS Daci_2453 NC_010002.1 2711761 2713923 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reh:H16_B2570 outer membrane receptor for Fe(III)-dicitrate; TonB-dependent siderophore receptor complement(2711761..2713923) Delftia acidovorans SPH-1 5748016 YP_001563477.1 CDS Daci_2454 NC_010002.1 2714173 2715618 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reu:Reut_B3939 regulatory protein GntR, HTH:aminotransferase, class I and II; transcriptional regulator complement(2714173..2715618) Delftia acidovorans SPH-1 5748017 YP_001563478.1 CDS Daci_2455 NC_010002.1 2715651 2716520 R KEGG: ajs:Ajs_2784 hypothetical protein; hypothetical protein complement(2715651..2716520) Delftia acidovorans SPH-1 5748018 YP_001563479.1 CDS Daci_2456 NC_010002.1 2716643 2718031 R PFAM: peptidase U32; KEGG: ajs:Ajs_2783 peptidase U32; peptidase U32 complement(2716643..2718031) Delftia acidovorans SPH-1 5748019 YP_001563480.1 CDS Daci_2457 NC_010002.1 2718053 2718964 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2215 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2718053..2718964) Delftia acidovorans SPH-1 5748020 YP_001563481.1 CDS Daci_2458 NC_010002.1 2719109 2719879 D PFAM: protein of unknown function DUF81; KEGG: bbr:BB1250 putative membrane protein; hypothetical protein 2719109..2719879 Delftia acidovorans SPH-1 5748021 YP_001563482.1 CDS Daci_2459 NC_010002.1 2719890 2720489 R TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: bur:Bcep18194_A4861 class I peptide chain release factor; peptide chain release factor H complement(2719890..2720489) Delftia acidovorans SPH-1 5748022 YP_001563483.1 CDS Daci_2460 NC_010002.1 2720480 2721634 R TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: pfl:PFL_2087 RtcB protein; release factor H-coupled RctB family protein complement(2720480..2721634) Delftia acidovorans SPH-1 5748023 YP_001563484.1 CDS Daci_2461 NC_010002.1 2722032 2723174 R TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: aav:Aave_2225 TonB family protein; protein TolA complement(2722032..2723174) Delftia acidovorans SPH-1 5748024 YP_001563485.1 CDS Daci_2462 NC_010002.1 2723199 2723624 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2723199..2723624) Delftia acidovorans SPH-1 5748025 YP_001563486.1 CDS Daci_2463 NC_010002.1 2723655 2724359 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2771 MotA/TolQ/ExbB proton channel; protein TolQ complement(2723655..2724359) Delftia acidovorans SPH-1 5748026 YP_001563487.1 CDS Daci_2464 NC_010002.1 2724356 2724772 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2770 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase complement(2724356..2724772) Delftia acidovorans SPH-1 5748027 YP_001563488.1 CDS Daci_2465 NC_010002.1 2724785 2725969 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: ajs:Ajs_2769 aminotransferase, class I and II; aminotransferase complement(2724785..2725969) Delftia acidovorans SPH-1 5748028 YP_001563489.1 CDS Daci_2466 NC_010002.1 2726074 2726712 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: aav:Aave_2230 NusB antitermination factor; NusB antitermination factor complement(2726074..2726712) Delftia acidovorans SPH-1 5748029 YP_001563490.1 CDS ribH NC_010002.1 2726709 2727179 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2726709..2727179) Delftia acidovorans SPH-1 5748030 YP_001563491.1 CDS Daci_2468 NC_010002.1 2727183 2728352 R TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: aav:Aave_2232 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2727183..2728352) Delftia acidovorans SPH-1 5748031 YP_001563492.1 CDS Daci_2469 NC_010002.1 2728517 2728870 R PFAM: ferredoxin; KEGG: ajs:Ajs_2765 ferredoxin; ferredoxin complement(2728517..2728870) Delftia acidovorans SPH-1 5748032 YP_001563493.1 CDS Daci_2470 NC_010002.1 2729468 2730376 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2729468..2730376 Delftia acidovorans SPH-1 5748033 YP_001563494.1 CDS Daci_2471 NC_010002.1 2730647 2732176 D TIGRFAM: glutamate--cysteine ligase; KEGG: ajs:Ajs_2521 glutamate--cysteine ligase; glutamate--cysteine ligase 2730647..2732176 Delftia acidovorans SPH-1 5748034 YP_001563495.1 CDS Daci_2472 NC_010002.1 2732184 2732396 R KEGG: ajs:Ajs_2512 hypothetical protein; hypothetical protein complement(2732184..2732396) Delftia acidovorans SPH-1 5748035 YP_001563496.1 CDS Daci_2473 NC_010002.1 2732399 2732641 R KEGG: pna:Pnap_1311 hypothetical protein; hypothetical protein complement(2732399..2732641) Delftia acidovorans SPH-1 5748036 YP_001563497.1 CDS Daci_2474 NC_010002.1 2732809 2733762 D PFAM: GTP-binding protein HSR1-related; KEGG: aav:Aave_2270 GTP-binding protein; GTP-binding protein HSR1-like 2732809..2733762 Delftia acidovorans SPH-1 5748037 YP_001563498.1 CDS Daci_2475 NC_010002.1 2733899 2736190 D KEGG: rfr:Rfer_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2733899..2736190 Delftia acidovorans SPH-1 5748038 YP_001563499.1 CDS Daci_2476 NC_010002.1 2736222 2737418 R KEGG: azo:azo1605 probable hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(2736222..2737418) Delftia acidovorans SPH-1 5748039 YP_001563500.1 CDS Daci_2477 NC_010002.1 2737633 2738655 D KEGG: pna:Pnap_1325 phosphoesterase, DHHA1; phosphoesterase DHHA1 2737633..2738655 Delftia acidovorans SPH-1 5748040 YP_001563501.1 CDS Daci_2478 NC_010002.1 2738595 2739554 R PFAM: pseudouridine synthase; KEGG: aav:Aave_2278 pseudouridine synthase; pseudouridine synthase complement(2738595..2739554) Delftia acidovorans SPH-1 5748041 YP_001563502.1 CDS Daci_2479 NC_010002.1 2739659 2740657 D KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; TIGRFAM: diaminopimelate dehydrogenase; PFAM: dihydrodipicolinate reductase; homoserine dehydrogenase NAD-binding; diaminopimelate dehydrogenase 2739659..2740657 Delftia acidovorans SPH-1 5748042 YP_001563503.1 CDS Daci_2480 NC_010002.1 2740659 2742032 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_2285 major facilitator superfamily MFS_1; major facilitator transporter complement(2740659..2742032) Delftia acidovorans SPH-1 5748043 YP_001563504.1 CDS Daci_2481 NC_010002.1 2742123 2742470 D hypothetical protein 2742123..2742470 Delftia acidovorans SPH-1 5748044 YP_001563505.1 CDS Daci_2482 NC_010002.1 2742836 2744284 D PFAM: phospholipase D/Transphosphatidylase; KEGG: rde:RD1_3832 cardiolipin synthase; phospholipase D/transphosphatidylase 2742836..2744284 Delftia acidovorans SPH-1 5748045 YP_001563506.1 CDS Daci_2483 NC_010002.1 2744346 2745188 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein; hypothetical protein complement(2744346..2745188) Delftia acidovorans SPH-1 5748046 YP_001563507.1 CDS Daci_2484 NC_010002.1 2745521 2746099 D KEGG: pol:Bpro_3373 putative lipoprotein; putative lipoprotein 2745521..2746099 Delftia acidovorans SPH-1 5748047 YP_001563508.1 CDS Daci_2485 NC_010002.1 2746122 2747072 R PFAM: peptidase M23B; KEGG: ajs:Ajs_2496 peptidase M23B; peptidase M23B complement(2746122..2747072) Delftia acidovorans SPH-1 5748048 YP_001563509.1 CDS Daci_2486 NC_010002.1 2747099 2749366 R KEGG: aav:Aave_1201 hypothetical protein; hypothetical protein complement(2747099..2749366) Delftia acidovorans SPH-1 5748049 YP_001563510.1 CDS Daci_2487 NC_010002.1 2749528 2749857 R KEGG: aav:Aave_2295 hypothetical protein; hypothetical protein complement(2749528..2749857) Delftia acidovorans SPH-1 5748050 YP_001563511.1 CDS Daci_2488 NC_010002.1 2749937 2750653 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bvi:Bcep1808_4224 methyltransferase type 11; type 12 methyltransferase complement(2749937..2750653) Delftia acidovorans SPH-1 5748051 YP_001563512.1 CDS Daci_2489 NC_010002.1 2750783 2752669 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(2750783..2752669) Delftia acidovorans SPH-1 5748052 YP_001563513.1 CDS Daci_2490 NC_010002.1 2752822 2753187 D KEGG: ajs:Ajs_1609 hypothetical protein; hypothetical protein 2752822..2753187 Delftia acidovorans SPH-1 5748053 YP_001563514.1 CDS Daci_2491 NC_010002.1 2753318 2753761 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2753318..2753761 Delftia acidovorans SPH-1 5748054 YP_001563515.1 CDS Daci_2492 NC_010002.1 2753755 2754642 D PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_2303 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2753755..2754642 Delftia acidovorans SPH-1 5748055 YP_001563516.1 CDS Daci_2493 NC_010002.1 2754647 2755045 D PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor; class I peptide chain release factor 2754647..2755045 Delftia acidovorans SPH-1 5748056 YP_001563517.1 CDS Daci_2494 NC_010002.1 2755128 2756066 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B 2755128..2756066 Delftia acidovorans SPH-1 5748057 YP_001563518.1 CDS Daci_2495 NC_010002.1 2756162 2756827 D PFAM: phospholipase/Carboxylesterase; KEGG: ajs:Ajs_1614 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2756162..2756827 Delftia acidovorans SPH-1 5748058 YP_001563519.1 CDS Daci_2496 NC_010002.1 2757019 2757939 D KEGG: ajs:Ajs_1615 hypothetical protein; hypothetical protein 2757019..2757939 Delftia acidovorans SPH-1 5748059 YP_001563520.1 CDS Daci_2497 NC_010002.1 2757953 2758423 R PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_2309 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2757953..2758423) Delftia acidovorans SPH-1 5748060 YP_001563521.1 CDS Daci_2498 NC_010002.1 2758450 2761158 D paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 2758450..2761158 Delftia acidovorans SPH-1 5748061 YP_001563522.1 CDS Daci_2499 NC_010002.1 2761494 2763674 D PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I; gluconate 2-dehydrogenase 2761494..2763674 Delftia acidovorans SPH-1 5748062 YP_001563523.1 CDS Daci_2500 NC_010002.1 2763917 2764672 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2125 hypothetical protein; hypothetical protein complement(2763917..2764672) Delftia acidovorans SPH-1 5748063 YP_001563524.1 CDS Daci_2501 NC_010002.1 2764799 2765767 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3495 transcriptional regulator, LysR family; LysR family transcriptional regulator 2764799..2765767 Delftia acidovorans SPH-1 5748064 YP_001563525.1 CDS Daci_2502 NC_010002.1 2765758 2766627 R PFAM: protein of unknown function DUF980; KEGG: aav:Aave_2314 protein of unknown function DUF980; hypothetical protein complement(2765758..2766627) Delftia acidovorans SPH-1 5748065 YP_001563526.1 CDS Daci_2503 NC_010002.1 2766624 2767472 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: ajs:Ajs_1619 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(2766624..2767472) Delftia acidovorans SPH-1 5748066 YP_001563527.1 CDS Daci_2504 NC_010002.1 2767637 2768143 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: aav:Aave_2316 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2767637..2768143) Delftia acidovorans SPH-1 5748067 YP_001563528.1 CDS Daci_2505 NC_010002.1 2768201 2768869 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ajs:Ajs_1621 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2768201..2768869) Delftia acidovorans SPH-1 5748068 YP_001563529.1 CDS Daci_2506 NC_010002.1 2768932 2769591 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aav:Aave_2319 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2768932..2769591) Delftia acidovorans SPH-1 5748069 YP_001563530.1 CDS cysS NC_010002.1 2769670 2771055 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2769670..2771055 Delftia acidovorans SPH-1 5748070 YP_001563531.1 CDS Daci_2508 NC_010002.1 2771105 2771914 D PFAM: HhH-GPD family protein; KEGG: vei:Veis_4937 HhH-GPD family protein; HhH-GPD family protein 2771105..2771914 Delftia acidovorans SPH-1 5748071 YP_001563532.1 CDS Daci_2509 NC_010002.1 2771998 2772975 D KEGG: ajs:Ajs_1625 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2771998..2772975 Delftia acidovorans SPH-1 5748072 YP_001563533.1 CDS Daci_2510 NC_010002.1 2773162 2774121 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 2773162..2774121 Delftia acidovorans SPH-1 5748073 YP_001563534.1 CDS Daci_2511 NC_010002.1 2774300 2775565 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 2774300..2775565 Delftia acidovorans SPH-1 5748074 YP_001563535.1 CDS Daci_2512 NC_010002.1 2781601 2782350 D PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1183 pseudouridine synthase; pseudouridine synthase 2781601..2782350 Delftia acidovorans SPH-1 5748081 YP_001563536.1 CDS Daci_2513 NC_010002.1 2782370 2783797 D KEGG: tcr:507951.150 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase; guanine deaminase 2782370..2783797 Delftia acidovorans SPH-1 5748082 YP_001563537.1 CDS Daci_2514 NC_010002.1 2783845 2785218 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: lbr:LVIS_1044 xanthine/uracil permease; xanthine/uracil/vitamin C permease 2783845..2785218 Delftia acidovorans SPH-1 5748083 YP_001563538.1 CDS Daci_2515 NC_010002.1 2785325 2785774 R PFAM: RNA-binding S4 domain protein; KEGG: aav:Aave_2419 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(2785325..2785774) Delftia acidovorans SPH-1 5748084 YP_001563539.1 CDS Daci_2516 NC_010002.1 2785779 2787266 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: ajs:Ajs_1640 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2785779..2787266) Delftia acidovorans SPH-1 5748085 YP_001563540.1 CDS Daci_2517 NC_010002.1 2787297 2788019 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_3012 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2787297..2788019) Delftia acidovorans SPH-1 5748086 YP_001563541.1 CDS Daci_2518 NC_010002.1 2788120 2789079 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1642 uncharacterized protein UPF0065; hypothetical protein 2788120..2789079 Delftia acidovorans SPH-1 5748087 YP_001563542.1 CDS Daci_2519 NC_010002.1 2789296 2789865 D KEGG: aav:Aave_3010 hypothetical protein; hypothetical protein 2789296..2789865 Delftia acidovorans SPH-1 5748088 YP_001563543.1 CDS Daci_2520 NC_010002.1 2789865 2791379 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane; hypothetical protein 2789865..2791379 Delftia acidovorans SPH-1 5748089 YP_001563544.1 CDS Daci_2521 NC_010002.1 2791897 2796426 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_4283 YD repeat protein; YD repeat-containing protein 2791897..2796426 Delftia acidovorans SPH-1 5748090 YP_001563545.1 CDS Daci_2522 NC_010002.1 2796462 2796797 D KEGG: ecs:ECs0238 hypothetical protein; hypothetical protein 2796462..2796797 Delftia acidovorans SPH-1 5748091 YP_001563546.1 CDS Daci_2523 NC_010002.1 2797215 2797640 D KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein 2797215..2797640 Delftia acidovorans SPH-1 5748092 YP_001563547.1 CDS Daci_2524 NC_010002.1 2797700 2798038 D KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein 2797700..2798038 Delftia acidovorans SPH-1 5748093 YP_001563548.1 CDS Daci_2525 NC_010002.1 2798853 2799212 R hypothetical protein complement(2798853..2799212) Delftia acidovorans SPH-1 5748094 YP_001563549.1 CDS Daci_2526 NC_010002.1 2799300 2799674 D hypothetical protein 2799300..2799674 Delftia acidovorans SPH-1 5748095 YP_001563550.1 CDS Daci_2527 NC_010002.1 2800740 2800988 D hypothetical protein 2800740..2800988 Delftia acidovorans SPH-1 5748096 YP_001563551.1 CDS Daci_2528 NC_010002.1 2801216 2802529 D PFAM: lipolytic protein G-D-S-L family; KEGG: pau:PA14_23690 putative secreted protein; GDSL family lipase 2801216..2802529 Delftia acidovorans SPH-1 5748097 YP_001563552.1 CDS Daci_2529 NC_010002.1 2802809 2803129 D PFAM: regulatory protein ArsR; KEGG: mpt:Mpe_A2424 transcriptional regulator; ArsR family transcriptional regulator 2802809..2803129 Delftia acidovorans SPH-1 5748098 YP_001563553.1 CDS Daci_2530 NC_010002.1 2803201 2804733 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bch:Bcen2424_5529 sigma54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 2803201..2804733 Delftia acidovorans SPH-1 5748099 YP_001563554.1 CDS Daci_2531 NC_010002.1 2804842 2806020 D KEGG: xac:XAC4279 hypothetical protein; hypothetical protein 2804842..2806020 Delftia acidovorans SPH-1 5748100 YP_001563555.1 CDS Daci_2532 NC_010002.1 2806087 2806896 R KEGG: bch:Bcen2424_5344 hypothetical protein; hypothetical protein complement(2806087..2806896) Delftia acidovorans SPH-1 5748101 YP_001563556.1 CDS Daci_2533 NC_010002.1 2806897 2808057 R KEGG: sus:Acid_7657 hypothetical protein; hypothetical protein complement(2806897..2808057) Delftia acidovorans SPH-1 5748102 YP_001563557.1 CDS Daci_2534 NC_010002.1 2808182 2808868 R KEGG: ajs:Ajs_2446 hypothetical protein; hypothetical protein complement(2808182..2808868) Delftia acidovorans SPH-1 5748103 YP_001563558.1 CDS Daci_2535 NC_010002.1 2808891 2809634 R KEGG: ajs:Ajs_2446 hypothetical protein; hypothetical protein complement(2808891..2809634) Delftia acidovorans SPH-1 5748104 YP_001563559.1 CDS Daci_2536 NC_010002.1 2809671 2810369 R KEGG: ajs:Ajs_2446 hypothetical protein; hypothetical protein complement(2809671..2810369) Delftia acidovorans SPH-1 5748105 YP_001563560.1 CDS Daci_2537 NC_010002.1 2810393 2810944 R KEGG: ajs:Ajs_2446 hypothetical protein; hypothetical protein complement(2810393..2810944) Delftia acidovorans SPH-1 5748106 YP_001563561.1 CDS Daci_2538 NC_010002.1 2811102 2811332 R KEGG: aav:Aave_1687 putative transcriptional regulator, XRE family; hypothetical protein complement(2811102..2811332) Delftia acidovorans SPH-1 5748107 YP_001563562.1 CDS Daci_2539 NC_010002.1 2811607 2812056 D PFAM: peptidase S24 and S26 domain protein; KEGG: bbr:BB1678 putative phage repressor; peptidase S24/S26 domain-containing protein 2811607..2812056 Delftia acidovorans SPH-1 5748108 YP_001563563.1 CDS Daci_2540 NC_010002.1 2812507 2814288 D KEGG: dar:Daro_1107 hypothetical protein; hypothetical protein 2812507..2814288 Delftia acidovorans SPH-1 5748109 YP_001563564.1 CDS Daci_2541 NC_010002.1 2814616 2814921 D PFAM: transposase IS3/IS911 family protein; KEGG: ecw:EcE24377A_F0075 IS2, transposase orfA; transposase IS3/IS911 family protein 2814616..2814921 Delftia acidovorans SPH-1 5748110 YP_001563565.1 CDS Daci_2542 NC_010002.1 2815068 2815250 D KEGG: nmu:Nmul_A2405 integrase, catalytic region; integrase catalytic subunit 2815068..2815250 Delftia acidovorans SPH-1 5748111 YP_001563566.1 CDS Daci_2543 NC_010002.1 2815967 2816815 D hypothetical protein 2815967..2816815 Delftia acidovorans SPH-1 5748112 YP_001563567.1 CDS Daci_2544 NC_010002.1 2817150 2818253 R PFAM: porin Gram-negative type; KEGG: vei:Veis_0301 porin, gram-negative type; porin complement(2817150..2818253) Delftia acidovorans SPH-1 5748113 YP_001563568.1 CDS Daci_2545 NC_010002.1 2818382 2819233 R KEGG: aav:Aave_3268 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2818382..2819233) Delftia acidovorans SPH-1 5748114 YP_001563569.1 CDS Daci_2546 NC_010002.1 2819309 2820283 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_3813 uncharacterized protein UPF0065; hypothetical protein complement(2819309..2820283) Delftia acidovorans SPH-1 5748115 YP_001563570.1 CDS Daci_2547 NC_010002.1 2820365 2821297 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B4412 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 2820365..2821297 Delftia acidovorans SPH-1 5748116 YP_001563571.1 CDS Daci_2548 NC_010002.1 2821582 2822163 D PFAM: NADPH-dependent FMN reductase; KEGG: rme:Rmet_5075 NADPH-dependent FMN reductase; FMN reductase 2821582..2822163 Delftia acidovorans SPH-1 5748117 YP_001563572.1 CDS Daci_2549 NC_010002.1 2822207 2823190 D PFAM: Domain of unknown function DUF1852; KEGG: aav:Aave_2780 hypothetical protein; hypothetical protein 2822207..2823190 Delftia acidovorans SPH-1 5748118 YP_001563573.1 CDS Daci_2550 NC_010002.1 2823299 2824324 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2823299..2824324 Delftia acidovorans SPH-1 5748119 YP_001563574.1 CDS Daci_2551 NC_010002.1 2824615 2825817 D PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0332 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2824615..2825817 Delftia acidovorans SPH-1 5748120 YP_001563575.1 CDS Daci_2552 NC_010002.1 2825821 2826603 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0330 ABC transporter related; ABC transporter-like protein 2825821..2826603 Delftia acidovorans SPH-1 5748121 YP_001563576.1 CDS Daci_2553 NC_010002.1 2826600 2827349 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0329 ABC transporter related; ABC transporter-like protein 2826600..2827349 Delftia acidovorans SPH-1 5748122 YP_001563577.1 CDS Daci_2554 NC_010002.1 2827346 2828338 D PFAM: inner-membrane translocator; KEGG: vei:Veis_0328 inner-membrane translocator; inner-membrane translocator 2827346..2828338 Delftia acidovorans SPH-1 5748123 YP_001563578.1 CDS Daci_2555 NC_010002.1 2828352 2829419 D PFAM: inner-membrane translocator; KEGG: vei:Veis_0326 inner-membrane translocator; inner-membrane translocator 2828352..2829419 Delftia acidovorans SPH-1 5748124 YP_001563579.1 CDS Daci_2556 NC_010002.1 2829472 2831676 D KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane 2829472..2831676 Delftia acidovorans SPH-1 5748125 YP_001563580.1 CDS Daci_2557 NC_010002.1 2831742 2832650 D PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1646 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2831742..2832650 Delftia acidovorans SPH-1 5748126 YP_001563581.1 CDS Daci_2558 NC_010002.1 2832760 2833755 D PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1647 rhodanese domain protein; rhodanese domain-containing protein 2832760..2833755 Delftia acidovorans SPH-1 5748127 YP_001563582.1 CDS Daci_2559 NC_010002.1 2833774 2833947 R KEGG: ajs:Ajs_1648 hypothetical protein; hypothetical protein complement(2833774..2833947) Delftia acidovorans SPH-1 5748128 YP_001563583.1 CDS Daci_2560 NC_010002.1 2833959 2835071 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(2833959..2835071) Delftia acidovorans SPH-1 5748129 YP_001563584.1 CDS Daci_2561 NC_010002.1 2835150 2836124 R PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1650 rhodanese domain protein; rhodanese domain-containing protein complement(2835150..2836124) Delftia acidovorans SPH-1 5748130 YP_001563585.1 CDS Daci_2562 NC_010002.1 2836271 2837368 R PFAM: ferrochelatase; KEGG: mpt:Mpe_A2495 ferrochelatase; ferrochelatase complement(2836271..2837368) Delftia acidovorans SPH-1 5748131 YP_001563586.1 CDS Daci_2563 NC_010002.1 2837460 2838230 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vei:Veis_1575 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 2837460..2838230 Delftia acidovorans SPH-1 5748132 YP_001563587.1 CDS Daci_2564 NC_010002.1 2838261 2839094 D KEGG: vei:Veis_1576 integral membrane protein; integral membrane protein 2838261..2839094 Delftia acidovorans SPH-1 5748133 YP_001563588.1 CDS Daci_2565 NC_010002.1 2839151 2839363 D KEGG: vei:Veis_1577 hypothetical protein; hypothetical protein 2839151..2839363 Delftia acidovorans SPH-1 5748134 YP_001563589.1 CDS Daci_2566 NC_010002.1 2839538 2840521 R PFAM: conserved hypothetical protein; KEGG: har:HEAR0415 conserved hypothetical protein; putative exported protein; hypothetical protein complement(2839538..2840521) Delftia acidovorans SPH-1 5748135 YP_001563590.1 CDS Daci_2567 NC_010002.1 2840654 2841517 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bxe:Bxe_B0974 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(2840654..2841517) Delftia acidovorans SPH-1 5748136 YP_001563591.1 CDS Daci_2568 NC_010002.1 2841528 2841926 R PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PD00115 gamma-carboxymuconolactone decarboxylase protein; carboxymuconolactone decarboxylase complement(2841528..2841926) Delftia acidovorans SPH-1 5748137 YP_001563592.1 CDS Daci_2569 NC_010002.1 2842094 2842777 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: acr:Acry_3403 transcriptional regulator, GntR family; GntR family transcriptional regulator 2842094..2842777 Delftia acidovorans SPH-1 5748138 YP_001563593.1 CDS Daci_2570 NC_010002.1 2842817 2843836 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_3271 uncharacterized protein UPF0065; hypothetical protein complement(2842817..2843836) Delftia acidovorans SPH-1 5748139 YP_001563594.1 CDS Daci_2571 NC_010002.1 2843960 2845348 R TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: ajs:Ajs_1201 amine oxidase; squalene-associated FAD-dependent desaturase complement(2843960..2845348) Delftia acidovorans SPH-1 5748140 YP_001563595.1 CDS Daci_2572 NC_010002.1 2845345 2846190 R TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1202 squalene/phytoene synthase; squalene synthase complement(2845345..2846190) Delftia acidovorans SPH-1 5748141 YP_001563596.1 CDS Daci_2573 NC_010002.1 2846258 2847142 R TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1205 squalene/phytoene synthase; squalene synthase complement(2846258..2847142) Delftia acidovorans SPH-1 5748142 YP_001563597.1 CDS Daci_2574 NC_010002.1 2847317 2848567 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1462 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2847317..2848567 Delftia acidovorans SPH-1 5748143 YP_001563598.1 CDS Daci_2575 NC_010002.1 2848564 2851779 D PFAM: acriflavin resistance protein; KEGG: aav:Aave_1461 acriflavin resistance protein; acriflavin resistance protein 2848564..2851779 Delftia acidovorans SPH-1 5748144 YP_001563599.1 CDS Daci_2576 NC_010002.1 2852172 2853188 D PFAM: integrase family protein; KEGG: bbr:BB2185 integrase; integrase family protein 2852172..2853188 Delftia acidovorans SPH-1 5748146 YP_001563600.1 CDS Daci_2577 NC_010002.1 2853308 2853715 D PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein; XRE family transcriptional regulator 2853308..2853715 Delftia acidovorans SPH-1 5748147 YP_001563601.1 CDS Daci_2578 NC_010002.1 2853715 2855022 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like; HipA domain-containing protein 2853715..2855022 Delftia acidovorans SPH-1 5748148 YP_001563602.1 CDS Daci_2579 NC_010002.1 2855049 2855255 R hypothetical protein complement(2855049..2855255) Delftia acidovorans SPH-1 5748149 YP_001563603.1 CDS Daci_2580 NC_010002.1 2855290 2855538 R hypothetical protein complement(2855290..2855538) Delftia acidovorans SPH-1 5748150 YP_001563604.1 CDS Daci_2581 NC_010002.1 2855560 2857539 R PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein; replication gene A complement(2855560..2857539) Delftia acidovorans SPH-1 5748151 YP_001563605.1 CDS Daci_2582 NC_010002.1 2857544 2857996 R hypothetical protein complement(2857544..2857996) Delftia acidovorans SPH-1 5748152 YP_001563606.1 CDS Daci_2583 NC_010002.1 2858105 2858428 R PFAM: transcriptional activator Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein; transcriptional activator Ogr/delta complement(2858105..2858428) Delftia acidovorans SPH-1 5748153 YP_001563607.1 CDS Daci_2584 NC_010002.1 2858490 2858720 R hypothetical protein complement(2858490..2858720) Delftia acidovorans SPH-1 5748154 YP_001563608.1 CDS Daci_2585 NC_010002.1 2858798 2859130 D SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_3316 putative transcriptional regulator, XRE family; XRE family transcriptional regulator 2858798..2859130 Delftia acidovorans SPH-1 5748155 YP_001563609.1 CDS Daci_2586 NC_010002.1 2859179 2860180 R PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein; late control D family protein complement(2859179..2860180) Delftia acidovorans SPH-1 5748156 YP_001563610.1 CDS Daci_2587 NC_010002.1 2860180 2860620 R PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein; P2 GpU family protein complement(2860180..2860620) Delftia acidovorans SPH-1 5748157 YP_001563611.1 CDS Daci_2588 NC_010002.1 2860632 2863469 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein complement(2860632..2863469) Delftia acidovorans SPH-1 5748158 YP_001563612.1 CDS Daci_2589 NC_010002.1 2863583 2863699 R PFAM: P2 GpE family protein; KEGG: pna:Pnap_3312 phage P2 GpE family protein; P2 GpE family protein complement(2863583..2863699) Delftia acidovorans SPH-1 5748159 YP_001563613.1 CDS Daci_2590 NC_010002.1 2863708 2864067 R PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein; tail E family protein complement(2863708..2864067) Delftia acidovorans SPH-1 5748160 YP_001563614.1 CDS Daci_2591 NC_010002.1 2864156 2864665 R TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein; phage major tail tube protein complement(2864156..2864665) Delftia acidovorans SPH-1 5748161 YP_001563615.1 CDS Daci_2592 NC_010002.1 2864729 2865922 R PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein; tail sheath protein complement(2864729..2865922) Delftia acidovorans SPH-1 5748162 YP_001563616.1 CDS Daci_2593 NC_010002.1 2865980 2866465 R hypothetical protein complement(2865980..2866465) Delftia acidovorans SPH-1 5748163 YP_001563617.1 CDS Daci_2594 NC_010002.1 2867208 2867894 R KEGG: mra:MRA_0288 PE-PGRS family protein; hypothetical protein complement(2867208..2867894) Delftia acidovorans SPH-1 5748164 YP_001563618.1 CDS Daci_2595 NC_010002.1 2867891 2868181 R hypothetical protein complement(2867891..2868181) Delftia acidovorans SPH-1 5748165 YP_001563619.1 CDS Daci_2596 NC_010002.1 2868178 2869011 R KEGG: mbo:Mb3538 PE-PGRS family protein; hypothetical protein complement(2868178..2869011) Delftia acidovorans SPH-1 5748166 YP_001563620.1 CDS Daci_2597 NC_010002.1 2869008 2869541 R hypothetical protein complement(2869008..2869541) Delftia acidovorans SPH-1 5748167 YP_001563621.1 CDS Daci_2598 NC_010002.1 2869544 2872660 R KEGG: oan:Oant_1495 virulence-associated protein; virulence-associated protein complement(2869544..2872660) Delftia acidovorans SPH-1 5748168 YP_001563622.1 CDS Daci_2599 NC_010002.1 2872671 2873156 R KEGG: syf:Synpcc7942_0742 hypothetical protein; hypothetical protein complement(2872671..2873156) Delftia acidovorans SPH-1 5748169 YP_001563623.1 CDS Daci_2600 NC_010002.1 2873159 2874139 R KEGG: syf:Synpcc7942_0741 phage tail protein I; hypothetical protein complement(2873159..2874139) Delftia acidovorans SPH-1 5748170 YP_001563624.1 CDS Daci_2601 NC_010002.1 2874136 2874993 R PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein; baseplate J family protein complement(2874136..2874993) Delftia acidovorans SPH-1 5748171 YP_001563625.1 CDS Daci_2602 NC_010002.1 2874990 2875340 R PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25; GPW/gp25 family protein complement(2874990..2875340) Delftia acidovorans SPH-1 5748172 YP_001563626.1 CDS Daci_2603 NC_010002.1 2875337 2875990 R TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: stm:STM2710 phage baseplate assembly-like protein; phage baseplate assembly protein V complement(2875337..2875990) Delftia acidovorans SPH-1 5748173 YP_001563627.1 CDS Daci_2604 NC_010002.1 2876041 2876550 R PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein; P2 phage tail completion R family protein complement(2876041..2876550) Delftia acidovorans SPH-1 5748174 YP_001563628.1 CDS Daci_2605 NC_010002.1 2876534 2877100 R KEGG: bpe:BP3355 hypothetical protein; hypothetical protein complement(2876534..2877100) Delftia acidovorans SPH-1 5748175 YP_001563629.1 CDS Daci_2606 NC_010002.1 2877100 2877681 R KEGG: aav:Aave_2903 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme complement(2877100..2877681) Delftia acidovorans SPH-1 5748176 YP_001563630.1 CDS Daci_2607 NC_010002.1 2877678 2877944 R KEGG: pna:Pnap_3295 hypothetical protein; hypothetical protein complement(2877678..2877944) Delftia acidovorans SPH-1 5748177 YP_001563631.1 CDS Daci_2608 NC_010002.1 2877946 2878149 R PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein; tail X family protein complement(2877946..2878149) Delftia acidovorans SPH-1 5748178 YP_001563632.1 CDS Daci_2609 NC_010002.1 2878535 2878753 R hypothetical protein complement(2878535..2878753) Delftia acidovorans SPH-1 5748179 YP_001563633.1 CDS Daci_2610 NC_010002.1 2879182 2880198 D PFAM: integrase family protein; KEGG: bbr:BB2185 integrase; integrase family protein 2879182..2880198 Delftia acidovorans SPH-1 5748180 YP_001563634.1 CDS Daci_2611 NC_010002.1 2880318 2880725 D PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein; XRE family transcriptional regulator 2880318..2880725 Delftia acidovorans SPH-1 5748181 YP_001563635.1 CDS Daci_2612 NC_010002.1 2880725 2882032 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: pol:Bpro_0337 HipA-like; HipA domain-containing protein 2880725..2882032 Delftia acidovorans SPH-1 5748182 YP_001563636.1 CDS Daci_2613 NC_010002.1 2882059 2882265 R hypothetical protein complement(2882059..2882265) Delftia acidovorans SPH-1 5748183 YP_001563637.1 CDS Daci_2614 NC_010002.1 2882300 2882548 R hypothetical protein complement(2882300..2882548) Delftia acidovorans SPH-1 5748184 YP_001563638.1 CDS Daci_2615 NC_010002.1 2882570 2884549 R PFAM: replication gene A; KEGG: bps:BPSS1052 hypothetical bacteriophage replication protein; replication gene A complement(2882570..2884549) Delftia acidovorans SPH-1 5748185 YP_001563639.1 CDS Daci_2616 NC_010002.1 2884554 2885006 R hypothetical protein complement(2884554..2885006) Delftia acidovorans SPH-1 5748186 YP_001563640.1 CDS Daci_2617 NC_010002.1 2885115 2885438 R PFAM: transcriptional activator Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein; transcriptional activator Ogr/delta complement(2885115..2885438) Delftia acidovorans SPH-1 5748187 YP_001563641.1 CDS Daci_2618 NC_010002.1 2885500 2885730 R hypothetical protein complement(2885500..2885730) Delftia acidovorans SPH-1 5748188 YP_001563642.1 CDS Daci_2619 NC_010002.1 2885808 2886140 D SMART: helix-turn-helix domain protein; KEGG: pna:Pnap_3316 putative transcriptional regulator, XRE family; XRE family transcriptional regulator 2885808..2886140 Delftia acidovorans SPH-1 5748189 YP_001563643.1 CDS Daci_2620 NC_010002.1 2886189 2887190 R PFAM: late control D family protein; KEGG: pna:Pnap_3315 phage late control D family protein; late control D family protein complement(2886189..2887190) Delftia acidovorans SPH-1 5748190 YP_001563644.1 CDS Daci_2621 NC_010002.1 2887190 2887630 R PFAM: P2 GpU family protein; KEGG: pna:Pnap_3314 phage P2 GpU family protein; P2 GpU family protein complement(2887190..2887630) Delftia acidovorans SPH-1 5748191 YP_001563645.1 CDS Daci_2622 NC_010002.1 2887642 2890479 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pna:Pnap_3313 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein complement(2887642..2890479) Delftia acidovorans SPH-1 5748192 YP_001563646.1 CDS Daci_2623 NC_010002.1 2890593 2890709 R PFAM: P2 GpE family protein; KEGG: pna:Pnap_3312 phage P2 GpE family protein; P2 GpE family protein complement(2890593..2890709) Delftia acidovorans SPH-1 5748193 YP_001563647.1 CDS Daci_2624 NC_010002.1 2890718 2891077 R PFAM: tail E family protein; KEGG: rso:RSc1916 probable phage-related protein; tail E family protein complement(2890718..2891077) Delftia acidovorans SPH-1 5748194 YP_001563648.1 CDS Daci_2625 NC_010002.1 2891166 2891675 R TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pna:Pnap_3309 phage major tail tube protein; phage major tail tube protein complement(2891166..2891675) Delftia acidovorans SPH-1 5748195 YP_001563649.1 CDS Daci_2626 NC_010002.1 2891739 2892932 R PFAM: tail sheath protein; KEGG: pna:Pnap_3308 phage tail sheath protein; tail sheath protein complement(2891739..2892932) Delftia acidovorans SPH-1 5748196 YP_001563650.1 CDS Daci_2627 NC_010002.1 2892990 2893475 R hypothetical protein complement(2892990..2893475) Delftia acidovorans SPH-1 5748197 YP_001563651.1 CDS Daci_2628 NC_010002.1 2894218 2894904 R KEGG: mra:MRA_0288 PE-PGRS family protein; hypothetical protein complement(2894218..2894904) Delftia acidovorans SPH-1 5748198 YP_001563652.1 CDS Daci_2629 NC_010002.1 2894901 2895191 R hypothetical protein complement(2894901..2895191) Delftia acidovorans SPH-1 5748199 YP_001563653.1 CDS Daci_2630 NC_010002.1 2895188 2896021 R KEGG: mbo:Mb3538 PE-PGRS family protein; hypothetical protein complement(2895188..2896021) Delftia acidovorans SPH-1 5748200 YP_001563654.1 CDS Daci_2631 NC_010002.1 2896018 2896551 R hypothetical protein complement(2896018..2896551) Delftia acidovorans SPH-1 5748201 YP_001563655.1 CDS Daci_2632 NC_010002.1 2896554 2899670 R KEGG: oan:Oant_1495 virulence-associated protein; virulence-associated protein complement(2896554..2899670) Delftia acidovorans SPH-1 5748202 YP_001563656.1 CDS Daci_2633 NC_010002.1 2899681 2900166 R KEGG: syf:Synpcc7942_0742 hypothetical protein; hypothetical protein complement(2899681..2900166) Delftia acidovorans SPH-1 5748203 YP_001563657.1 CDS Daci_2634 NC_010002.1 2900169 2901149 R KEGG: syf:Synpcc7942_0741 phage tail protein I; hypothetical protein complement(2900169..2901149) Delftia acidovorans SPH-1 5748204 YP_001563658.1 CDS Daci_2635 NC_010002.1 2901146 2902003 R PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein; baseplate J family protein complement(2901146..2902003) Delftia acidovorans SPH-1 5748205 YP_001563659.1 CDS Daci_2636 NC_010002.1 2902000 2902350 R PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25; GPW/gp25 family protein complement(2902000..2902350) Delftia acidovorans SPH-1 5748206 YP_001563660.1 CDS Daci_2637 NC_010002.1 2902347 2903072 R TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: stm:STM2710 phage baseplate assembly-like protein; phage baseplate assembly protein V complement(2902347..2903072) Delftia acidovorans SPH-1 5748207 YP_001563661.1 CDS Daci_2638 NC_010002.1 2903051 2903560 R PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein; P2 phage tail completion R family protein complement(2903051..2903560) Delftia acidovorans SPH-1 5748208 YP_001563662.1 CDS Daci_2639 NC_010002.1 2903544 2904110 R KEGG: bpe:BP3355 hypothetical protein; hypothetical protein complement(2903544..2904110) Delftia acidovorans SPH-1 5748209 YP_001563663.1 CDS Daci_2640 NC_010002.1 2904110 2904691 R KEGG: aav:Aave_2903 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme complement(2904110..2904691) Delftia acidovorans SPH-1 5748210 YP_001563664.1 CDS Daci_2641 NC_010002.1 2904688 2904954 R KEGG: pna:Pnap_3295 hypothetical protein; hypothetical protein complement(2904688..2904954) Delftia acidovorans SPH-1 5748211 YP_001563665.1 CDS Daci_2642 NC_010002.1 2904956 2905159 R PFAM: tail X family protein; KEGG: spt:SPA2577 putative phage tail protein; tail X family protein complement(2904956..2905159) Delftia acidovorans SPH-1 5748212 YP_001563666.1 CDS Daci_2643 NC_010002.1 2905545 2905763 R hypothetical protein complement(2905545..2905763) Delftia acidovorans SPH-1 5748213 YP_001563667.1 CDS tig NC_010002.1 2906335 2907645 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2906335..2907645 Delftia acidovorans SPH-1 5748214 YP_001563668.1 CDS Daci_2645 NC_010002.1 2907781 2908389 D KEGG: vei:Veis_4371 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 2907781..2908389 Delftia acidovorans SPH-1 5748215 YP_001563669.1 CDS clpX NC_010002.1 2908497 2909759 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2908497..2909759 Delftia acidovorans SPH-1 5748216 YP_001563670.1 CDS Daci_2647 NC_010002.1 2909880 2912294 D KEGG: aav:Aave_1457 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2909880..2912294 Delftia acidovorans SPH-1 5748217 YP_001563671.1 CDS Daci_2648 NC_010002.1 2913252 2914016 D PFAM: peptidase M48 Ste24p; KEGG: bpa:BPP1393 putative lipoprotein; peptidase M48 Ste24p 2913252..2914016 Delftia acidovorans SPH-1 5748222 YP_001563672.1 CDS Daci_2649 NC_010002.1 2914685 2915386 D KEGG: ajs:Ajs_2624 hypothetical protein; hypothetical protein 2914685..2915386 Delftia acidovorans SPH-1 5748225 YP_001563673.1 CDS Daci_2650 NC_010002.1 2915419 2916030 D PFAM: protein of unknown function DUF45; KEGG: ajs:Ajs_2868 protein of unknown function DUF45; hypothetical protein 2915419..2916030 Delftia acidovorans SPH-1 5748226 YP_001563674.1 CDS Daci_2651 NC_010002.1 2916032 2916922 R KEGG: ajs:Ajs_2867 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(2916032..2916922) Delftia acidovorans SPH-1 5748227 YP_001563675.1 CDS Daci_2652 NC_010002.1 2916981 2917568 R PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2916981..2917568) Delftia acidovorans SPH-1 5748228 YP_001563676.1 CDS Daci_2653 NC_010002.1 2917565 2918197 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mhu:Mhun_2814 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(2917565..2918197) Delftia acidovorans SPH-1 5748229 YP_001563677.1 CDS Daci_2654 NC_010002.1 2918298 2919851 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: ajs:Ajs_1056 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(2918298..2919851) Delftia acidovorans SPH-1 5748230 YP_001563678.1 CDS fumC NC_010002.1 2920165 2921556 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2920165..2921556 Delftia acidovorans SPH-1 5748231 YP_001563679.1 CDS Daci_2656 NC_010002.1 2921622 2922521 R PFAM: putative esterase; KEGG: bte:BTH_II1456 esterase, putative; putative esterase complement(2921622..2922521) Delftia acidovorans SPH-1 5748232 YP_001563680.1 CDS Daci_2657 NC_010002.1 2922668 2923699 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3135 drug resistance transporter, Bcr/CflA subfamily; major facilitator transporter complement(2922668..2923699) Delftia acidovorans SPH-1 5748233 YP_001563681.1 CDS Daci_2658 NC_010002.1 2923701 2924210 R PFAM: regulatory protein MarR; KEGG: xau:Xaut_1307 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2923701..2924210) Delftia acidovorans SPH-1 5748234 YP_001563682.1 CDS Daci_2659 NC_010002.1 2924361 2925047 R KEGG: ajs:Ajs_1106 hypothetical protein; hypothetical protein complement(2924361..2925047) Delftia acidovorans SPH-1 5748235 YP_001563683.1 CDS Daci_2660 NC_010002.1 2925187 2925825 D PFAM: Putative ParB-like nuclease; KEGG: bte:BTH_I2525 hypothetical protein; putative ParB-like nuclease 2925187..2925825 Delftia acidovorans SPH-1 5748236 YP_001563684.1 CDS Daci_2661 NC_010002.1 2925825 2927450 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: rme:Rmet_4635 sulphate transporter; sulfate transporter 2925825..2927450 Delftia acidovorans SPH-1 5748237 YP_001563685.1 CDS Daci_2662 NC_010002.1 2927472 2928458 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcv:XCV2678 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(2927472..2928458) Delftia acidovorans SPH-1 5748238 YP_001563686.1 CDS Daci_2663 NC_010002.1 2928564 2931137 D TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: xac:XAC2501 multiphosphoryl transfer protein; phosphoenolpyruvate-protein phosphotransferase 2928564..2931137 Delftia acidovorans SPH-1 5748239 YP_001563687.1 CDS Daci_2664 NC_010002.1 2931134 2932099 D KEGG: xcb:XC_1743 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 2931134..2932099 Delftia acidovorans SPH-1 5748240 YP_001563688.1 CDS Daci_2665 NC_010002.1 2932123 2933850 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: xom:XOO_2652 PTS system fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 2932123..2933850 Delftia acidovorans SPH-1 5748241 YP_001563689.1 CDS proX NC_010002.1 2933909 2934955 R with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit complement(2933909..2934955) Delftia acidovorans SPH-1 5748242 YP_001563690.1 CDS Daci_2667 NC_010002.1 2935066 2936265 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1064 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2935066..2936265) Delftia acidovorans SPH-1 5748243 YP_001563691.1 CDS Daci_2668 NC_010002.1 2936262 2937617 R KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(2936262..2937617) Delftia acidovorans SPH-1 5748244 YP_001563692.1 CDS Daci_2669 NC_010002.1 2938768 2939670 R PFAM: methylenetetrahydrofolate reductase; KEGG: rme:Rmet_2988 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(2938768..2939670) Delftia acidovorans SPH-1 5748245 YP_001563693.1 CDS Daci_2670 NC_010002.1 2939762 2940430 R PFAM: protein of unknown function DUF208; KEGG: rme:Rmet_2989 protein of unknown function DUF208; hypothetical protein complement(2939762..2940430) Delftia acidovorans SPH-1 5748246 YP_001563694.1 CDS Daci_2671 NC_010002.1 2940427 2940927 R KEGG: rme:Rmet_2990 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2940427..2940927) Delftia acidovorans SPH-1 5748247 YP_001563695.1 CDS Daci_2672 NC_010002.1 2940968 2942506 R PFAM: Integrase catalytic region; KEGG: rme:Rmet_2991 integrase, catalytic region; integrase catalytic subunit complement(2940968..2942506) Delftia acidovorans SPH-1 5748248 YP_001563696.1 CDS Daci_2673 NC_010002.1 2943084 2944067 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_2992 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(2943084..2944067) Delftia acidovorans SPH-1 5748249 YP_001563697.1 CDS Daci_2674 NC_010002.1 2944076 2944876 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2993 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit complement(2944076..2944876) Delftia acidovorans SPH-1 5748250 YP_001563698.1 CDS Daci_2675 NC_010002.1 2944873 2945751 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: rme:Rmet_2994 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(2944873..2945751) Delftia acidovorans SPH-1 5748251 YP_001563699.1 CDS Daci_2676 NC_010002.1 2945745 2946584 R KEGG: rme:Rmet_2995 phosphonate ABC transporter PhnC, ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase complement(2945745..2946584) Delftia acidovorans SPH-1 5748252 YP_001563700.1 CDS Daci_2677 NC_010002.1 2946783 2947643 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_2996 transcriptional regulator, LysR family; LysR family transcriptional regulator 2946783..2947643 Delftia acidovorans SPH-1 5748253 YP_001563701.1 CDS Daci_2678 NC_010002.1 2947751 2948218 D KEGG: rme:Rmet_2997 hypothetical protein; hypothetical protein 2947751..2948218 Delftia acidovorans SPH-1 5748254 YP_001563702.1 CDS Daci_2679 NC_010002.1 2948215 2951187 R PFAM: transposase Tn3 family protein; KEGG: ppd:Ppro_3845 transposase Tn3 family protein; transposase Tn3 family protein complement(2948215..2951187) Delftia acidovorans SPH-1 5748255 YP_001563703.1 CDS Daci_2680 NC_010002.1 2951190 2951747 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ppd:Ppro_3846 resolvase, N-terminal domain; resolvase domain-containing protein complement(2951190..2951747) Delftia acidovorans SPH-1 5748256 YP_001563704.1 CDS Daci_2681 NC_010002.1 2951878 2953353 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_3847 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2951878..2953353) Delftia acidovorans SPH-1 5748257 YP_001563705.1 CDS Daci_2682 NC_010002.1 2953340 2953813 R KEGG: maq:Maqu_1254 hypothetical protein; hypothetical protein complement(2953340..2953813) Delftia acidovorans SPH-1 5748258 YP_001563706.1 CDS Daci_2683 NC_010002.1 2953842 2954552 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_3849 ABC transporter related; ABC transporter-like protein complement(2953842..2954552) Delftia acidovorans SPH-1 5748259 YP_001563707.1 CDS Daci_2684 NC_010002.1 2954554 2955759 R PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_3850 protein of unknown function DUF214; hypothetical protein complement(2954554..2955759) Delftia acidovorans SPH-1 5748260 YP_001563708.1 CDS Daci_2685 NC_010002.1 2955756 2956907 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppd:Ppro_3851 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2955756..2956907) Delftia acidovorans SPH-1 5748261 YP_001563709.1 CDS Daci_2686 NC_010002.1 2956904 2957512 R PFAM: regulatory protein TetR; KEGG: maq:Maqu_1250 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2956904..2957512) Delftia acidovorans SPH-1 5748262 YP_001563710.1 CDS Daci_2687 NC_010002.1 2957910 2958164 D KEGG: pst:PSPTO_2851 SCO1/SenC family protein; SCO1/SenC family protein 2957910..2958164 Delftia acidovorans SPH-1 5748263 YP_001563711.1 CDS Daci_2688 NC_010002.1 2958191 2958670 D PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 protein of unknown function DUF461; hypothetical protein 2958191..2958670 Delftia acidovorans SPH-1 5748264 YP_001563712.1 CDS Daci_2689 NC_010002.1 2958787 2959062 R KEGG: aav:Aave_0736 hypothetical protein; hypothetical protein complement(2958787..2959062) Delftia acidovorans SPH-1 5748265 YP_001563713.1 CDS Daci_2690 NC_010002.1 2959059 2960327 R PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein; conjugation TrbI family protein complement(2959059..2960327) Delftia acidovorans SPH-1 5748266 YP_001563714.1 CDS Daci_2691 NC_010002.1 2960330 2961331 R TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein; P-type conjugative transfer protein TrbG complement(2960330..2961331) Delftia acidovorans SPH-1 5748267 YP_001563715.1 CDS Daci_2692 NC_010002.1 2961328 2962032 R PFAM: Conjugal transfer protein; KEGG: ajs:Ajs_2904 conjugal transfer protein; conjugal transfer protein TrbF complement(2961328..2962032) Delftia acidovorans SPH-1 5748268 YP_001563716.1 CDS Daci_2693 NC_010002.1 2962051 2963403 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(2962051..2963403) Delftia acidovorans SPH-1 5748269 YP_001563717.1 CDS Daci_2694 NC_010002.1 2963400 2963726 R KEGG: ajs:Ajs_2906 putative lipoprotein; putative lipoprotein complement(2963400..2963726) Delftia acidovorans SPH-1 5748270 YP_001563718.1 CDS Daci_2695 NC_010002.1 2963738 2964493 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pau:PA14_30900 TrbJ-like protein; conjugal transfer protein TrbJ complement(2963738..2964493) Delftia acidovorans SPH-1 5748271 YP_001563719.1 CDS Daci_2696 NC_010002.1 2964490 2966961 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(2964490..2966961) Delftia acidovorans SPH-1 5748272 YP_001563720.1 CDS Daci_2697 NC_010002.1 2966976 2967248 R KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein complement(2966976..2967248) Delftia acidovorans SPH-1 5748273 YP_001563721.1 CDS Daci_2698 NC_010002.1 2967245 2967622 R PFAM: Conjugal transfer protein TrbC; KEGG: ajs:Ajs_2910 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(2967245..2967622) Delftia acidovorans SPH-1 5748274 YP_001563722.1 CDS Daci_2699 NC_010002.1 2967619 2968653 R TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_2911 type II secretion system protein E; P-type conjugative transfer ATPase TrbB complement(2967619..2968653) Delftia acidovorans SPH-1 5748275 YP_001563723.1 CDS Daci_2700 NC_010002.1 2968650 2969114 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein; CopG/DNA-binding domain-containing protein complement(2968650..2969114) Delftia acidovorans SPH-1 5748276 YP_001563724.1 CDS Daci_2701 NC_010002.1 2969111 2971120 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(2969111..2971120) Delftia acidovorans SPH-1 5748277 YP_001563725.1 CDS Daci_2702 NC_010002.1 2971337 2971492 R KEGG: rme:Rmet_1547 putative lipoprotein; putative lipoprotein complement(2971337..2971492) Delftia acidovorans SPH-1 5748278 YP_001563726.1 CDS Daci_2703 NC_010002.1 2971590 2972504 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1278 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2971590..2972504) Delftia acidovorans SPH-1 5748279 YP_001563727.1 CDS Daci_2704 NC_010002.1 2972547 2972969 R PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase complement(2972547..2972969) Delftia acidovorans SPH-1 5748280 YP_001563728.1 CDS Daci_2705 NC_010002.1 2972981 2974654 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: xft:PD1689 inner membrane protein; sulfatase complement(2972981..2974654) Delftia acidovorans SPH-1 5748281 YP_001563729.1 CDS Daci_2706 NC_010002.1 2974651 2975433 R KEGG: xcb:XC_3128 hypothetical protein; hypothetical protein complement(2974651..2975433) Delftia acidovorans SPH-1 5748282 YP_001563730.1 CDS Daci_2707 NC_010002.1 2975420 2976667 R KEGG: swi:Swit_3710 outer membrane efflux protein; outer membrane efflux protein complement(2975420..2976667) Delftia acidovorans SPH-1 5748283 YP_001563731.1 CDS Daci_2708 NC_010002.1 2976715 2977035 R KEGG: azo:azo0269 hypothetical protein; hypothetical protein complement(2976715..2977035) Delftia acidovorans SPH-1 5748284 YP_001563732.1 CDS Daci_2709 NC_010002.1 2977032 2980127 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_3011 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(2977032..2980127) Delftia acidovorans SPH-1 5748285 YP_001563733.1 CDS Daci_2710 NC_010002.1 2980141 2981364 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rme:Rmet_3012 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2980141..2981364) Delftia acidovorans SPH-1 5748286 YP_001563734.1 CDS Daci_2711 NC_010002.1 2981675 2982226 D PFAM: cytochrome B561; KEGG: rme:Rmet_3013 cytochrome b561; cytochrome B561 2981675..2982226 Delftia acidovorans SPH-1 5748287 YP_001563735.1 CDS Daci_2712 NC_010002.1 2982268 2982975 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: rme:Rmet_3014 protein of unknown function DUF125, transmembrane; hypothetical protein 2982268..2982975 Delftia acidovorans SPH-1 5748288 YP_001563736.1 CDS Daci_2713 NC_010002.1 2982989 2984401 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_3015 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(2982989..2984401) Delftia acidovorans SPH-1 5748289 YP_001563737.1 CDS Daci_2714 NC_010002.1 2984405 2985070 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rme:Rmet_3016 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2984405..2985070) Delftia acidovorans SPH-1 5748290 YP_001563738.1 CDS Daci_2715 NC_010002.1 2985085 2986428 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein complement(2985085..2986428) Delftia acidovorans SPH-1 5748291 YP_001563739.1 CDS Daci_2716 NC_010002.1 2986644 2989025 R KEGG: pau:PA14_31070 hypothetical protein; hypothetical protein complement(2986644..2989025) Delftia acidovorans SPH-1 5748292 YP_001563740.1 CDS Daci_2717 NC_010002.1 2989087 2989674 R KEGG: rme:Rmet_3020 putative conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein complement(2989087..2989674) Delftia acidovorans SPH-1 5748293 YP_001563741.1 CDS Daci_2718 NC_010002.1 2989671 2990195 R KEGG: rme:Rmet_3021 hypothetical protein; hypothetical protein complement(2989671..2990195) Delftia acidovorans SPH-1 5748294 YP_001563742.1 CDS Daci_2719 NC_010002.1 2990192 2990455 R KEGG: rme:Rmet_3022 hypothetical protein; hypothetical protein complement(2990192..2990455) Delftia acidovorans SPH-1 5748295 YP_001563743.1 CDS Daci_2720 NC_010002.1 2990452 2991090 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(2990452..2991090) Delftia acidovorans SPH-1 5748296 YP_001563744.1 CDS Daci_2721 NC_010002.1 2991344 2992201 R KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein complement(2991344..2992201) Delftia acidovorans SPH-1 5748297 YP_001563745.1 CDS Daci_2722 NC_010002.1 2992228 2992524 R KEGG: rme:Rmet_3025 hypothetical protein; hypothetical protein complement(2992228..2992524) Delftia acidovorans SPH-1 5748298 YP_001563746.1 CDS Daci_2723 NC_010002.1 2992818 2993123 D KEGG: net:Neut_2619 hypothetical protein; hypothetical protein 2992818..2993123 Delftia acidovorans SPH-1 5748299 YP_001563747.1 CDS Daci_2724 NC_010002.1 2993131 2994531 D PFAM: integrase family protein; KEGG: pol:Bpro_1705 phage integrase; integrase family protein 2993131..2994531 Delftia acidovorans SPH-1 5748300 YP_001563748.1 CDS Daci_2725 NC_010002.1 2994541 2997150 D PFAM: integrase family protein; KEGG: shn:Shewana3_2916 hypothetical protein; integrase family protein 2994541..2997150 Delftia acidovorans SPH-1 5748301 YP_001563749.1 CDS Daci_2726 NC_010002.1 2997147 2997827 D KEGG: pol:Bpro_1703 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2997147..2997827 Delftia acidovorans SPH-1 5748302 YP_001563750.1 CDS Daci_2727 NC_010002.1 2997973 2998737 R KEGG: rme:Rmet_3026 hypothetical protein; hypothetical protein complement(2997973..2998737) Delftia acidovorans SPH-1 5748303 YP_001563751.1 CDS Daci_2728 NC_010002.1 2999079 2999426 R KEGG: rme:Rmet_3027 putative lipoprotein; putative lipoprotein complement(2999079..2999426) Delftia acidovorans SPH-1 5748304 YP_001563752.1 CDS Daci_2729 NC_010002.1 2999650 2999943 D PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 2999650..2999943 Delftia acidovorans SPH-1 5748305 YP_001563753.1 CDS Daci_2730 NC_010002.1 3000297 3000611 R PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_3029 protein of unknown function DUF736; hypothetical protein complement(3000297..3000611) Delftia acidovorans SPH-1 5748306 YP_001563754.1 CDS Daci_2731 NC_010002.1 3001433 3001951 D PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3031 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3001433..3001951 Delftia acidovorans SPH-1 5748307 YP_001563755.1 CDS Daci_2732 NC_010002.1 3002082 3002357 R KEGG: rme:Rmet_3032 hypothetical protein; hypothetical protein complement(3002082..3002357) Delftia acidovorans SPH-1 5748308 YP_001563756.1 CDS Daci_2733 NC_010002.1 3002354 3004420 R PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease; nuclease complement(3002354..3004420) Delftia acidovorans SPH-1 5748309 YP_001563757.1 CDS Daci_2734 NC_010002.1 3004496 3005323 R PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932; hypothetical protein complement(3004496..3005323) Delftia acidovorans SPH-1 5748310 YP_001563758.1 CDS Daci_2735 NC_010002.1 3005848 3006111 D hypothetical protein 3005848..3006111 Delftia acidovorans SPH-1 5748311 YP_001563759.1 CDS Daci_2736 NC_010002.1 3006259 3006558 D KEGG: rme:Rmet_3036 hypothetical protein; hypothetical protein 3006259..3006558 Delftia acidovorans SPH-1 5748312 YP_001563760.1 CDS Daci_2737 NC_010002.1 3006701 3006979 R KEGG: rme:Rmet_3037 hypothetical protein; hypothetical protein complement(3006701..3006979) Delftia acidovorans SPH-1 5748313 YP_001563761.1 CDS Daci_2738 NC_010002.1 3007043 3007393 R KEGG: rme:Rmet_3038 hypothetical protein; hypothetical protein complement(3007043..3007393) Delftia acidovorans SPH-1 5748314 YP_001563762.1 CDS Daci_2739 NC_010002.1 3007770 3008885 R KEGG: rme:Rmet_3039 beta-lactamase-like protein; hypothetical protein complement(3007770..3008885) Delftia acidovorans SPH-1 5748315 YP_001563763.1 CDS Daci_2740 NC_010002.1 3008886 3011141 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_3040 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein complement(3008886..3011141) Delftia acidovorans SPH-1 5748316 YP_001563764.1 CDS Daci_2741 NC_010002.1 3011138 3012331 R KEGG: rme:Rmet_3041 hypothetical protein; hypothetical protein complement(3011138..3012331) Delftia acidovorans SPH-1 5748317 YP_001563765.1 CDS Daci_2742 NC_010002.1 3012421 3013323 D KEGG: rme:Rmet_3042 hypothetical protein; hypothetical protein 3012421..3013323 Delftia acidovorans SPH-1 5748318 YP_001563766.1 CDS Daci_2743 NC_010002.1 3013330 3014118 D KEGG: rme:Rmet_3043 hypothetical protein; hypothetical protein 3013330..3014118 Delftia acidovorans SPH-1 5748319 YP_001563767.1 CDS Daci_2744 NC_010002.1 3014164 3015300 R PFAM: protein of unknown function DUF1016; KEGG: rme:Rmet_3044 protein of unknown function DUF1016; hypothetical protein complement(3014164..3015300) Delftia acidovorans SPH-1 5748320 YP_001563768.1 CDS Daci_2745 NC_010002.1 3015297 3016544 R PFAM: integrase family protein; KEGG: rme:Rmet_3045 phage integrase; integrase family protein complement(3015297..3016544) Delftia acidovorans SPH-1 5748321 YP_001563769.1 CDS Daci_2746 NC_010002.1 3016730 3017338 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1066 uncharacterized protein UPF0114; hypothetical protein complement(3016730..3017338) Delftia acidovorans SPH-1 5748322 YP_001563770.1 CDS Daci_2747 NC_010002.1 3017570 3019570 D TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_1067 acetate--CoA ligase; acetate--CoA ligase 3017570..3019570 Delftia acidovorans SPH-1 5748323 YP_001563771.1 CDS Daci_2748 NC_010002.1 3019746 3020228 D KEGG: aav:Aave_1500 hypothetical protein; hypothetical protein 3019746..3020228 Delftia acidovorans SPH-1 5748324 YP_001563772.1 CDS Daci_2749 NC_010002.1 3020330 3020638 R PFAM: cytochrome c class I; KEGG: aav:Aave_1504 cytochrome c, class I; class I cytochrome c complement(3020330..3020638) Delftia acidovorans SPH-1 5748325 YP_001563773.1 CDS Daci_2750 NC_010002.1 3020742 3020984 D KEGG: aav:Aave_1505 hypothetical protein; hypothetical protein 3020742..3020984 Delftia acidovorans SPH-1 5748326 YP_001563774.1 CDS Daci_2751 NC_010002.1 3020986 3022428 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5328 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(3020986..3022428) Delftia acidovorans SPH-1 5748327 YP_001563775.1 CDS Daci_2752 NC_010002.1 3022415 3025606 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5319 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(3022415..3025606) Delftia acidovorans SPH-1 5748328 YP_001563776.1 CDS Daci_2753 NC_010002.1 3025617 3026867 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_1545 putative heavy metal efflux pump, HlyD family; RND family efflux transporter MFP subunit complement(3025617..3026867) Delftia acidovorans SPH-1 5748329 YP_001563777.1 CDS Daci_2754 NC_010002.1 3026956 3028431 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: rso:RSc0549 probable transmembrane sensor histidine kinase transcription regulator protein; histidine kinase complement(3026956..3028431) Delftia acidovorans SPH-1 5748330 YP_001563778.1 CDS Daci_2755 NC_010002.1 3028428 3029093 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo0975 probable two-component response regulatory protein; two component transcriptional regulator complement(3028428..3029093) Delftia acidovorans SPH-1 5748331 YP_001563779.1 CDS Daci_2756 NC_010002.1 3029184 3031124 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3029184..3031124 Delftia acidovorans SPH-1 5748332 YP_001563780.1 CDS Daci_2757 NC_010002.1 3031478 3031954 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_1074 bacterioferritin; bacterioferritin complement(3031478..3031954) Delftia acidovorans SPH-1 5748333 YP_001563781.1 CDS Daci_2758 NC_010002.1 3032218 3033057 D catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 3032218..3033057 Delftia acidovorans SPH-1 5748334 YP_001563782.1 CDS Daci_2759 NC_010002.1 3033128 3035317 D PFAM: CoA-binding domain protein; KEGG: nar:Saro_0674 CoA-binding protein; CoA-binding domain-containing protein 3033128..3035317 Delftia acidovorans SPH-1 5748335 YP_001563783.1 CDS Daci_2760 NC_010002.1 3035424 3036794 D PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_0918 major facilitator superfamily MFS_1; major facilitator transporter 3035424..3036794 Delftia acidovorans SPH-1 5748336 YP_001563784.1 CDS Daci_2761 NC_010002.1 3036791 3038581 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ppf:Pput_2404 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3036791..3038581 Delftia acidovorans SPH-1 5748337 YP_001563785.1 CDS Daci_2762 NC_010002.1 3038601 3039155 D PFAM: regulatory protein MarR; KEGG: xcv:XCV0364 transcriptional regulator, MarR family; MarR family transcriptional regulator 3038601..3039155 Delftia acidovorans SPH-1 5748338 YP_001563786.1 CDS Daci_2763 NC_010002.1 3039199 3040062 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3039199..3040062 Delftia acidovorans SPH-1 5748339 YP_001563787.1 CDS Daci_2764 NC_010002.1 3040291 3041736 D PFAM: Malonyl-CoA decarboxylase; KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 3040291..3041736 Delftia acidovorans SPH-1 5748340 YP_001563788.1 CDS Daci_2765 NC_010002.1 3041833 3042831 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_1513 uncharacterized protein UPF0065; hypothetical protein 3041833..3042831 Delftia acidovorans SPH-1 5748341 YP_001563789.1 CDS Daci_2766 NC_010002.1 3042959 3044113 D KEGG: vei:Veis_0487 hypothetical protein; hypothetical protein 3042959..3044113 Delftia acidovorans SPH-1 5748342 YP_001563790.1 CDS Daci_2767 NC_010002.1 3044126 3044821 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_C5947 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator complement(3044126..3044821) Delftia acidovorans SPH-1 5748343 YP_001563791.1 CDS Daci_2768 NC_010002.1 3044882 3045631 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_1256 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3044882..3045631 Delftia acidovorans SPH-1 5748344 YP_001563792.1 CDS Daci_2769 NC_010002.1 3045814 3046782 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_1257 uncharacterized protein UPF0065; hypothetical protein 3045814..3046782 Delftia acidovorans SPH-1 5748345 YP_001563793.1 CDS Daci_2770 NC_010002.1 3046901 3048133 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1258 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3046901..3048133 Delftia acidovorans SPH-1 5748346 YP_001563794.1 CDS Daci_2771 NC_010002.1 3048120 3049730 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 3048120..3049730 Delftia acidovorans SPH-1 5748347 YP_001563795.1 CDS Daci_2772 NC_010002.1 3049839 3050282 R PFAM: UspA domain protein; KEGG: vei:Veis_1173 UspA domain protein; UspA domain-containing protein complement(3049839..3050282) Delftia acidovorans SPH-1 5748348 YP_001563796.1 CDS Daci_2773 NC_010002.1 3050357 3052831 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1082 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 3050357..3052831 Delftia acidovorans SPH-1 5748349 YP_001563797.1 CDS Daci_2774 NC_010002.1 3052972 3053139 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ajs:Ajs_1083 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 3052972..3053139 Delftia acidovorans SPH-1 5748350 YP_001563798.1 CDS Daci_2775 NC_010002.1 3053203 3054639 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 3053203..3054639 Delftia acidovorans SPH-1 5748351 YP_001563799.1 CDS Daci_2776 NC_010002.1 3054659 3055291 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 3054659..3055291 Delftia acidovorans SPH-1 5748352 YP_001563800.1 CDS Daci_2777 NC_010002.1 3055303 3055440 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: ajs:Ajs_1086 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 3055303..3055440 Delftia acidovorans SPH-1 5748353 YP_001563801.1 CDS Daci_2778 NC_010002.1 3055468 3056385 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: aav:Aave_1526 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 3055468..3056385 Delftia acidovorans SPH-1 5748354 YP_001563802.1 CDS Daci_2779 NC_010002.1 3056463 3057917 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ajs:Ajs_1088 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase accessory protein CcoG 3056463..3057917 Delftia acidovorans SPH-1 5748355 YP_001563803.1 CDS Daci_2780 NC_010002.1 3057975 3058289 D KEGG: aav:Aave_1528 hypothetical protein; hypothetical protein 3057975..3058289 Delftia acidovorans SPH-1 5748356 YP_001563804.1 CDS Daci_2781 NC_010002.1 3058469 3058762 D KEGG: rfr:Rfer_1936 hypothetical protein; hypothetical protein 3058469..3058762 Delftia acidovorans SPH-1 5748357 YP_001563805.1 CDS Daci_2782 NC_010002.1 3058844 3059632 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1091 putative transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(3058844..3059632) Delftia acidovorans SPH-1 5748358 YP_001563806.1 CDS Daci_2783 NC_010002.1 3059726 3061108 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3059726..3061108 Delftia acidovorans SPH-1 5748359 YP_001563807.1 CDS Daci_2784 NC_010002.1 3061114 3061830 D KEGG: aav:Aave_1532 hypothetical protein; hypothetical protein 3061114..3061830 Delftia acidovorans SPH-1 5748360 YP_001563808.1 CDS Daci_2785 NC_010002.1 3061900 3063246 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3061900..3063246 Delftia acidovorans SPH-1 5748361 YP_001563809.1 CDS Daci_2786 NC_010002.1 3063243 3065729 D KEGG: rfr:Rfer_2629 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3063243..3065729 Delftia acidovorans SPH-1 5748362 YP_001563810.1 CDS Daci_2787 NC_010002.1 3065693 3066511 R PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81; hypothetical protein complement(3065693..3066511) Delftia acidovorans SPH-1 5748363 YP_001563811.1 CDS Daci_2788 NC_010002.1 3066902 3067303 R PFAM: protein of unknown function DUF710; KEGG: ajs:Ajs_1094 protein of unknown function DUF710; hypothetical protein complement(3066902..3067303) Delftia acidovorans SPH-1 5748364 YP_001563812.1 CDS Daci_2789 NC_010002.1 3067337 3067546 R KEGG: pol:Bpro_2787 hypothetical protein; hypothetical protein complement(3067337..3067546) Delftia acidovorans SPH-1 5748365 YP_001563813.1 CDS Daci_2790 NC_010002.1 3067736 3069274 D PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ajs:Ajs_1097 CobB/CobQ domain protein glutamine amidotransferase; glutamine amidotransferase 3067736..3069274 Delftia acidovorans SPH-1 5748366 YP_001563814.1 CDS Daci_2791 NC_010002.1 3069271 3069864 D PFAM: cobalbumin biosynthesis protein; KEGG: ajs:Ajs_1098 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein 3069271..3069864 Delftia acidovorans SPH-1 5748367 YP_001563815.1 CDS Daci_2792 NC_010002.1 3069861 3070739 D PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein; periplasmic-binding protein 3069861..3070739 Delftia acidovorans SPH-1 5748368 YP_001563816.1 CDS Daci_2793 NC_010002.1 3070781 3071764 D PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease 3070781..3071764 Delftia acidovorans SPH-1 5748369 YP_001563817.1 CDS Daci_2794 NC_010002.1 3071761 3072564 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2362 ABC transporter related; ABC transporter-like protein 3071761..3072564 Delftia acidovorans SPH-1 5748370 YP_001563818.1 CDS Daci_2795 NC_010002.1 3072581 3073378 D PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: mms:mma_1889 streptomycin phosphotransferase; 3''-kinase 3072581..3073378 Delftia acidovorans SPH-1 5748371 YP_001563819.1 CDS Daci_2796 NC_010002.1 3073375 3074253 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rme:Rmet_0343 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(3073375..3074253) Delftia acidovorans SPH-1 5748372 YP_001563820.1 CDS Daci_2797 NC_010002.1 3074414 3075757 D PFAM: aminotransferase class-III; KEGG: vei:Veis_1705 aminotransferase class-III; hypothetical protein 3074414..3075757 Delftia acidovorans SPH-1 5748373 YP_001563821.1 CDS Daci_2798 NC_010002.1 3075829 3076746 D PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0442 putative glutamine-binding protein; extracellular solute-binding protein 3075829..3076746 Delftia acidovorans SPH-1 5748374 YP_001563822.1 CDS Daci_2799 NC_010002.1 3076872 3077117 D KEGG: mbb:BCG_0315A hypothetical protein, antitoxin; antitoxin 3076872..3077117 Delftia acidovorans SPH-1 5748375 YP_001563823.1 CDS Daci_2800 NC_010002.1 3077114 3077551 D TIGRFAM: PIN domain protein family protein; KEGG: mtu:Rv0277c hypothetical protein; PilT domain-containing protein 3077114..3077551 Delftia acidovorans SPH-1 5748376 YP_001563824.1 CDS Daci_2801 NC_010002.1 3077581 3078237 D KEGG: rfr:Rfer_1038 Asp/Glu racemase; Asp/Glu racemase 3077581..3078237 Delftia acidovorans SPH-1 5748377 YP_001563825.1 CDS Daci_2802 NC_010002.1 3078301 3078870 D KEGG: rfr:Rfer_2618 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 3078301..3078870 Delftia acidovorans SPH-1 5748378 YP_001563826.1 CDS Daci_2803 NC_010002.1 3078910 3079617 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 3078910..3079617 Delftia acidovorans SPH-1 5748379 YP_001563827.1 CDS Daci_2804 NC_010002.1 3079614 3080708 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: ajs:Ajs_3180 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 3079614..3080708 Delftia acidovorans SPH-1 5748380 YP_001563828.1 CDS Daci_2805 NC_010002.1 3080705 3081748 D PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3179 aminotransferase, class I and II; class I/II aminotransferase 3080705..3081748 Delftia acidovorans SPH-1 5748381 YP_001563829.1 CDS Daci_2806 NC_010002.1 3081735 3083240 D TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: aav:Aave_1552 cobyric acid synthase CobQ; cobyric acid synthase CobQ 3081735..3083240 Delftia acidovorans SPH-1 5748382 YP_001563830.1 CDS Daci_2807 NC_010002.1 3083384 3083815 D KEGG: aav:Aave_0439 hypothetical protein; hypothetical protein 3083384..3083815 Delftia acidovorans SPH-1 5748383 YP_001563831.1 CDS Daci_2808 NC_010002.1 3084101 3084472 D KEGG: aav:Aave_3896 hypothetical protein; hypothetical protein 3084101..3084472 Delftia acidovorans SPH-1 5748384 YP_001563832.1 CDS Daci_2809 NC_010002.1 3084562 3085359 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_2462 hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(3084562..3085359) Delftia acidovorans SPH-1 5748385 YP_001563833.1 CDS Daci_2810 NC_010002.1 3085395 3086678 R PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_4878 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein complement(3085395..3086678) Delftia acidovorans SPH-1 5748386 YP_001563834.1 CDS Daci_2811 NC_010002.1 3086675 3087619 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(3086675..3087619) Delftia acidovorans SPH-1 5748387 YP_001563835.1 CDS Daci_2812 NC_010002.1 3087616 3088596 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bur:Bcep18194_B0473 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3087616..3088596) Delftia acidovorans SPH-1 5748388 YP_001563836.1 CDS Daci_2813 NC_010002.1 3088640 3089971 R PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0475 major facilitator superfamily (MFS_1) transporter; major facilitator transporter complement(3088640..3089971) Delftia acidovorans SPH-1 5748389 YP_001563837.1 CDS Daci_2814 NC_010002.1 3090086 3090724 R PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B2170 putative L-fuculose phosphate aldolase; putative aldolase complement(3090086..3090724) Delftia acidovorans SPH-1 5748390 YP_001563838.1 CDS Daci_2815 NC_010002.1 3090871 3091665 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rfr:Rfer_0447 GntR-like; GntR family transcriptional regulator complement(3090871..3091665) Delftia acidovorans SPH-1 5748391 YP_001563839.1 CDS Daci_2816 NC_010002.1 3091758 3093002 D KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3091758..3093002 Delftia acidovorans SPH-1 5748392 YP_001563840.1 CDS Daci_2817 NC_010002.1 3093023 3094486 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB2428 putative GntR-family transcriptional regulator; transcriptional regulator complement(3093023..3094486) Delftia acidovorans SPH-1 5748393 YP_001563841.1 CDS Daci_2818 NC_010002.1 3094592 3095338 D PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_4519 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3094592..3095338 Delftia acidovorans SPH-1 5748394 YP_001563842.1 CDS Daci_2819 NC_010002.1 3095314 3096228 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3095314..3096228) Delftia acidovorans SPH-1 5748395 YP_001563843.1 CDS Daci_2820 NC_010002.1 3096291 3097370 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065; hypothetical protein 3096291..3097370 Delftia acidovorans SPH-1 5748396 YP_001563844.1 CDS Daci_2821 NC_010002.1 3097380 3098267 R PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein; LuxR family transcriptional regulator complement(3097380..3098267) Delftia acidovorans SPH-1 5748397 YP_001563845.1 CDS Daci_2822 NC_010002.1 3098374 3098862 D KEGG: rha:RHA1_ro05126 hypothetical protein; hypothetical protein 3098374..3098862 Delftia acidovorans SPH-1 5748398 YP_001563846.1 CDS Daci_2823 NC_010002.1 3098910 3099917 D PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3983 uncharacterized protein UPF0065; hypothetical protein 3098910..3099917 Delftia acidovorans SPH-1 5748399 YP_001563847.1 CDS Daci_2824 NC_010002.1 3099921 3100673 R KEGG: aav:Aave_1562 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(3099921..3100673) Delftia acidovorans SPH-1 5748400 YP_001563848.1 CDS Daci_2825 NC_010002.1 3100808 3101881 D PFAM: protein of unknown function DUF1016; KEGG: bur:Bcep18194_B0261 protein of unknown function DUF1016; hypothetical protein 3100808..3101881 Delftia acidovorans SPH-1 5748401 YP_001563849.1 CDS Daci_2826 NC_010002.1 3101947 3102855 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2306 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(3101947..3102855) Delftia acidovorans SPH-1 5748402 YP_001563850.1 CDS Daci_2827 NC_010002.1 3102971 3104458 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3102971..3104458 Delftia acidovorans SPH-1 5748403 YP_001563851.1 CDS Daci_2828 NC_010002.1 3104518 3105504 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B2308 probable extra-cytoplasmic solute receptor; hypothetical protein 3104518..3105504 Delftia acidovorans SPH-1 5748404 YP_001563852.1 CDS Daci_2829 NC_010002.1 3105642 3106838 D PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3169 putative transcriptional regulator, GntR family; GntR family transcriptional regulator 3105642..3106838 Delftia acidovorans SPH-1 5748405 YP_001563853.1 CDS Daci_2830 NC_010002.1 3106835 3107092 D PFAM: SlyX family protein; KEGG: ajs:Ajs_3168 SlyX family protein; SlyX family protein 3106835..3107092 Delftia acidovorans SPH-1 5748406 YP_001563854.1 CDS Daci_2831 NC_010002.1 3107148 3107282 R hypothetical protein complement(3107148..3107282) Delftia acidovorans SPH-1 5748407 YP_001563855.1 CDS Daci_2832 NC_010002.1 3107491 3108918 R TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; KEGG: bur:Bcep18194_C6529 peptidase M20D, amidohydrolase; amidohydrolase complement(3107491..3108918) Delftia acidovorans SPH-1 5748408 YP_001563856.1 CDS Daci_2833 NC_010002.1 3108915 3109943 R PFAM: conserved hypothetical protein; KEGG: reh:H16_A3650 probable extra-cytoplasmic solute receptor; hypothetical protein complement(3108915..3109943) Delftia acidovorans SPH-1 5748409 YP_001563857.1 CDS Daci_2834 NC_010002.1 3110134 3111123 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A3224 transcriptional regulator, LysR-family; LysR family transcriptional regulator 3110134..3111123 Delftia acidovorans SPH-1 5748410 YP_001563858.1 CDS Daci_2835 NC_010002.1 3111240 3111788 D KEGG: vei:Veis_4884 hypothetical protein; hypothetical protein 3111240..3111788 Delftia acidovorans SPH-1 5748411 YP_001563859.1 CDS Daci_2836 NC_010002.1 3111838 3112743 R specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(3111838..3112743) Delftia acidovorans SPH-1 5748412 YP_001563860.1 CDS Daci_2837 NC_010002.1 3112814 3113464 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3161 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3112814..3113464 Delftia acidovorans SPH-1 5748413 YP_001563861.1 CDS Daci_2838 NC_010002.1 3113474 3113785 R hypothetical protein complement(3113474..3113785) Delftia acidovorans SPH-1 5748414 YP_001563862.1 CDS Daci_2839 NC_010002.1 3113816 3114394 R PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator; AsnC family transcriptional regulator complement(3113816..3114394) Delftia acidovorans SPH-1 5748415 YP_001563863.1 CDS Daci_2840 NC_010002.1 3114421 3115323 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pna:Pnap_4738 protein of unknown function DUF6, transmembrane; hypothetical protein 3114421..3115323 Delftia acidovorans SPH-1 5748416 YP_001563864.1 CDS Daci_2841 NC_010002.1 3115421 3116206 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_3160 lipoprotein, YaeC family; YaeC family lipoprotein complement(3115421..3116206) Delftia acidovorans SPH-1 5748417 YP_001563865.1 CDS Daci_2842 NC_010002.1 3116331 3116621 D KEGG: tcx:Tcr_1006 hypothetical protein; hypothetical protein 3116331..3116621 Delftia acidovorans SPH-1 5748418 YP_001563866.1 CDS Daci_2843 NC_010002.1 3116660 3118000 R PFAM: aminotransferase class V; regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_2406 transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; transcriptional regulator complement(3116660..3118000) Delftia acidovorans SPH-1 5748419 YP_001563867.1 CDS Daci_2844 NC_010002.1 3118103 3118588 D PFAM: thioesterase superfamily protein; KEGG: mms:mma_1704 hypothetical protein; thioesterase superfamily protein 3118103..3118588 Delftia acidovorans SPH-1 5748420 YP_001563868.1 CDS Daci_2845 NC_010002.1 3118653 3119441 R KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein complement(3118653..3119441) Delftia acidovorans SPH-1 5748421 YP_001563869.1 CDS Daci_2846 NC_010002.1 3119500 3120213 R KEGG: aav:Aave_1576 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(3119500..3120213) Delftia acidovorans SPH-1 5748422 YP_001563870.1 CDS Daci_2847 NC_010002.1 3120293 3120958 R KEGG: ajs:Ajs_3158 hypothetical protein; hypothetical protein complement(3120293..3120958) Delftia acidovorans SPH-1 5748423 YP_001563871.1 CDS Daci_2848 NC_010002.1 3120976 3124470 R KEGG: ajs:Ajs_3157 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(3120976..3124470) Delftia acidovorans SPH-1 5748424 YP_001563872.1 CDS Daci_2849 NC_010002.1 3124566 3125462 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ajs:Ajs_3156 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3124566..3125462 Delftia acidovorans SPH-1 5748425 YP_001563873.1 CDS Daci_2850 NC_010002.1 3125470 3125958 D KEGG: ajs:Ajs_3155 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3125470..3125958 Delftia acidovorans SPH-1 5748426 YP_001563874.1 CDS Daci_2851 NC_010002.1 3126061 3127563 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_1583 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(3126061..3127563) Delftia acidovorans SPH-1 5748427 YP_001563875.1 CDS ompR NC_010002.1 3127807 3128538 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(3127807..3128538) Delftia acidovorans SPH-1 5748428 YP_001563876.1 CDS Daci_2853 NC_010002.1 3128727 3129596 D PFAM: protein of unknown function DUF541; KEGG: ajs:Ajs_3152 protein of unknown function DUF541; hypothetical protein 3128727..3129596 Delftia acidovorans SPH-1 5748429 YP_001563877.1 CDS Daci_2854 NC_010002.1 3129669 3130463 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(3129669..3130463) Delftia acidovorans SPH-1 5748430 YP_001563878.1 CDS Daci_2855 NC_010002.1 3130533 3131540 D PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_1587 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3130533..3131540 Delftia acidovorans SPH-1 5748431 YP_001563879.1 CDS Daci_2856 NC_010002.1 3131537 3133786 D KEGG: aav:Aave_1588 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 3131537..3133786 Delftia acidovorans SPH-1 5748432 YP_001563880.1 CDS Daci_2857 NC_010002.1 3134061 3134234 D KEGG: dge:Dgeo_0531 hypothetical protein; hypothetical protein 3134061..3134234 Delftia acidovorans SPH-1 5748434 YP_001563881.1 CDS Daci_2858 NC_010002.1 3134277 3134474 D KEGG: ade:Adeh_1212 hypothetical protein; hypothetical protein 3134277..3134474 Delftia acidovorans SPH-1 5748435 YP_001563882.1 CDS Daci_2859 NC_010002.1 3134485 3135015 R PFAM: GCN5-related N-acetyltransferase; KEGG: ecv:APECO1_667 spermidine N1-acetyltransferase; N-acetyltransferase GCN5 complement(3134485..3135015) Delftia acidovorans SPH-1 5748436 YP_001563883.1 CDS Daci_2860 NC_010002.1 3135020 3135700 R PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: vei:Veis_4153 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3135020..3135700) Delftia acidovorans SPH-1 5748437 YP_001563884.1 CDS gltD NC_010002.1 3136025 3137392 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3136025..3137392 Delftia acidovorans SPH-1 5748438 YP_001563885.1 CDS Daci_2862 NC_010002.1 3137427 3138746 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 3137427..3138746 Delftia acidovorans SPH-1 5748439 YP_001563886.1 CDS Daci_2863 NC_010002.1 3138879 3140372 D TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bur:Bcep18194_C6657 cytosine/purines, uracil, thiamine, allantoin transporter; NCS1 nucleoside transporter 3138879..3140372 Delftia acidovorans SPH-1 5748440 YP_001563887.1 CDS Daci_2864 NC_010002.1 3140403 3141863 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 3140403..3141863 Delftia acidovorans SPH-1 5748441 YP_001563888.1 CDS Daci_2865 NC_010002.1 3141888 3143153 D KEGG: aav:Aave_0970 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 3141888..3143153 Delftia acidovorans SPH-1 5748442 YP_001563889.1 CDS Daci_2866 NC_010002.1 3143514 3144053 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: ajs:Ajs_3148 polyhydroxyalkonate synthesis repressor, PhaR; polyhydroxyalkonate synthesis repressor PhaR 3143514..3144053 Delftia acidovorans SPH-1 5748444 YP_001563890.1 CDS rimO NC_010002.1 3144119 3145534 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 3144119..3145534 Delftia acidovorans SPH-1 5748445 YP_001563891.1 CDS Daci_2868 NC_010002.1 3145685 3146713 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1889 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3145685..3146713 Delftia acidovorans SPH-1 5748446 YP_001563892.1 CDS Daci_2869 NC_010002.1 3146777 3148195 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: nwi:Nwi_0162 multi antimicrobial extrusion protein MatE; MATE efflux family protein complement(3146777..3148195) Delftia acidovorans SPH-1 5748447 YP_001563893.1 CDS Daci_2870 NC_010002.1 3148250 3148870 R KEGG: pae:PA3765 hypothetical protein; hypothetical protein complement(3148250..3148870) Delftia acidovorans SPH-1 5748448 YP_001563894.1 CDS Daci_2871 NC_010002.1 3149007 3149561 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(3149007..3149561) Delftia acidovorans SPH-1 5748449 YP_001563895.1 CDS Daci_2872 NC_010002.1 3149724 3150857 R KEGG: ajs:Ajs_2874 hypothetical protein; hypothetical protein complement(3149724..3150857) Delftia acidovorans SPH-1 5748450 YP_001563896.1 CDS Daci_2873 NC_010002.1 3150863 3151747 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2873 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3150863..3151747) Delftia acidovorans SPH-1 5748451 YP_001563897.1 CDS Daci_2874 NC_010002.1 3151916 3153133 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_2872 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3151916..3153133 Delftia acidovorans SPH-1 5748452 YP_001563898.1 CDS Daci_2875 NC_010002.1 3153130 3154119 D PFAM: pyruvate carboxyltransferase; KEGG: aav:Aave_1652 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3153130..3154119 Delftia acidovorans SPH-1 5748453 YP_001563899.1 CDS Daci_2876 NC_010002.1 3154171 3155157 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2869 uncharacterized protein UPF0065; hypothetical protein 3154171..3155157 Delftia acidovorans SPH-1 5748454 YP_001563900.1 CDS uvrC NC_010002.1 3155216 3157168 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3155216..3157168 Delftia acidovorans SPH-1 5748455 YP_001563901.1 CDS Daci_2878 NC_010002.1 3157237 3157815 D KEGG: ajs:Ajs_2622 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3157237..3157815 Delftia acidovorans SPH-1 5748456 YP_001563902.1 CDS Daci_2879 NC_010002.1 3158268 3158540 D PFAM: histone family protein DNA-binding protein; KEGG: ajs:Ajs_2621 histone family protein DNA-binding protein; histone family protein DNA-binding protein 3158268..3158540 Delftia acidovorans SPH-1 5748457 YP_001563903.1 CDS Daci_2880 NC_010002.1 3158691 3160586 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_2620 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3158691..3160586 Delftia acidovorans SPH-1 5748459 YP_001563904.1 CDS Daci_2881 NC_010002.1 3161417 3162031 D KEGG: reh:H16_A0415 type IV pilus transmembrane protein FimT; Tfp pilus assembly protein FimT-like protein 3161417..3162031 Delftia acidovorans SPH-1 5748462 YP_001563905.1 CDS Daci_2882 NC_010002.1 3162031 3162576 D TIGRFAM: type IV pilus modification protein PilV; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV; type IV pilus modification protein PilV 3162031..3162576 Delftia acidovorans SPH-1 5748463 YP_001563906.1 CDS Daci_2883 NC_010002.1 3162605 3163399 D KEGG: pmy:Pmen_0960 Tfp pilus assembly protein PilW-like protein; Tfp pilus assembly protein PilW-like protein 3162605..3163399 Delftia acidovorans SPH-1 5748464 YP_001563907.1 CDS Daci_2884 NC_010002.1 3163432 3163989 D KEGG: psa:PST_0971 type 4 fimbrial biogenesis protein PilX; type 4 fimbrial biogenesis protein PilX 3163432..3163989 Delftia acidovorans SPH-1 5748465 YP_001563908.1 CDS Daci_2885 NC_010002.1 3164009 3168490 D KEGG: xft:PD1611 fimbrial assembly protein; fimbrial assembly protein 3164009..3168490 Delftia acidovorans SPH-1 5748466 YP_001563909.1 CDS Daci_2886 NC_010002.1 3168487 3168999 D KEGG: pmy:Pmen_0957 Tfp pilus assembly protein PilE-like protein; Tfp pilus assembly protein PilE-like protein 3168487..3168999 Delftia acidovorans SPH-1 5748467 YP_001563910.1 CDS Daci_2887 NC_010002.1 3169105 3169794 R PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase; isochorismatase hydrolase complement(3169105..3169794) Delftia acidovorans SPH-1 5748468 YP_001563911.1 CDS Daci_2888 NC_010002.1 3169805 3170431 R PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein; isochorismatase hydrolase complement(3169805..3170431) Delftia acidovorans SPH-1 5748469 YP_001563912.1 CDS Daci_2889 NC_010002.1 3170564 3171466 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmn:BMA10247_1774 transcriptional regulator, LysR family; LysR family transcriptional regulator 3170564..3171466 Delftia acidovorans SPH-1 5748470 YP_001563913.1 CDS Daci_2890 NC_010002.1 3171550 3172050 R PFAM: protein of unknown function DUF461; KEGG: rfr:Rfer_0618 protein of unknown function DUF461; hypothetical protein complement(3171550..3172050) Delftia acidovorans SPH-1 5748471 YP_001563914.1 CDS Daci_2891 NC_010002.1 3172047 3173285 R KEGG: dar:Daro_0198 hypothetical protein; hypothetical protein complement(3172047..3173285) Delftia acidovorans SPH-1 5748472 YP_001563915.1 CDS Daci_2892 NC_010002.1 3173287 3174486 R PFAM: Di-haem cytochrome c peroxidase; KEGG: lil:LA2974 methylamine utilization protein mauG; cytochrome-c peroxidase complement(3173287..3174486) Delftia acidovorans SPH-1 5748473 YP_001563916.1 CDS Daci_2893 NC_010002.1 3174486 3175514 R KEGG: mxa:MXAN_0976 putative lipoprotein; hypothetical protein complement(3174486..3175514) Delftia acidovorans SPH-1 5748474 YP_001563917.1 CDS Daci_2894 NC_010002.1 3175571 3176056 R hypothetical protein complement(3175571..3176056) Delftia acidovorans SPH-1 5748475 YP_001563918.1 CDS Daci_2895 NC_010002.1 3176067 3176534 R PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 protein of unknown function DUF461; hypothetical protein complement(3176067..3176534) Delftia acidovorans SPH-1 5748476 YP_001563919.1 CDS Daci_2896 NC_010002.1 3176623 3178683 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor; TonB-dependent receptor complement(3176623..3178683) Delftia acidovorans SPH-1 5748477 YP_001563920.1 CDS Daci_2897 NC_010002.1 3179067 3179426 R KEGG: aav:Aave_4449 hypothetical protein; hypothetical protein complement(3179067..3179426) Delftia acidovorans SPH-1 5748478 YP_001563921.1 CDS Daci_2898 NC_010002.1 3179640 3179990 D KEGG: vei:Veis_4741 hypothetical protein; hypothetical protein 3179640..3179990 Delftia acidovorans SPH-1 5748479 YP_001563922.1 CDS Daci_2899 NC_010002.1 3180184 3182253 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_0066 TonB-dependent receptor; TonB-dependent siderophore receptor 3180184..3182253 Delftia acidovorans SPH-1 5748480 YP_001563923.1 CDS Daci_2900 NC_010002.1 3182359 3182490 R KEGG: xac:XAC4326 urea amidolyase; hypothetical protein complement(3182359..3182490) Delftia acidovorans SPH-1 5748481 YP_001563924.1 CDS Daci_2901 NC_010002.1 3182758 3184515 R KEGG: aav:Aave_1797 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A complement(3182758..3184515) Delftia acidovorans SPH-1 5748483 YP_001563925.1 CDS Daci_2902 NC_010002.1 3184757 3186553 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3184757..3186553) Delftia acidovorans SPH-1 5748484 YP_001563926.1 CDS Daci_2903 NC_010002.1 3186821 3188482 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 3186821..3188482 Delftia acidovorans SPH-1 5748485 YP_001563927.1 CDS Daci_2904 NC_010002.1 3188543 3191146 D KEGG: aav:Aave_1802 hypothetical protein; hypothetical protein 3188543..3191146 Delftia acidovorans SPH-1 5748486 YP_001563928.1 CDS Daci_2905 NC_010002.1 3191314 3192459 D PFAM: monooxygenase FAD-binding; KEGG: reu:Reut_B3601 salicylate 1-monooxygenase; monooxygenase FAD-binding 3191314..3192459 Delftia acidovorans SPH-1 5748487 YP_001563929.1 CDS Daci_2906 NC_010002.1 3192466 3193476 R PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase S58 DmpA complement(3192466..3193476) Delftia acidovorans SPH-1 5748488 YP_001563930.1 CDS Daci_2907 NC_010002.1 3193543 3193944 R KEGG: ajs:Ajs_2603 hypothetical protein; hypothetical protein complement(3193543..3193944) Delftia acidovorans SPH-1 5748489 YP_001563931.1 CDS Daci_2908 NC_010002.1 3193960 3194508 R PFAM: protein of unknown function DUF411; KEGG: ajs:Ajs_2602 protein of unknown function DUF411; hypothetical protein complement(3193960..3194508) Delftia acidovorans SPH-1 5748490 YP_001563932.1 CDS Daci_2909 NC_010002.1 3194505 3194996 R PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type 1) copper domain protein; blue (type1) copper domain-containing protein complement(3194505..3194996) Delftia acidovorans SPH-1 5748491 YP_001563933.1 CDS Daci_2910 NC_010002.1 3195017 3196399 R PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_2600 multicopper oxidase, type 3; multicopper oxidase type 3 complement(3195017..3196399) Delftia acidovorans SPH-1 5748492 YP_001563934.1 CDS Daci_2911 NC_010002.1 3196401 3197849 R KEGG: ajs:Ajs_2599 copper tolerance protein; copper tolerance protein complement(3196401..3197849) Delftia acidovorans SPH-1 5748493 YP_001563935.1 CDS Daci_2912 NC_010002.1 3197846 3198238 R KEGG: ajs:Ajs_2598 hypothetical protein; hypothetical protein complement(3197846..3198238) Delftia acidovorans SPH-1 5748494 YP_001563936.1 CDS Daci_2913 NC_010002.1 3198327 3198818 R KEGG: ajs:Ajs_2597 hypothetical protein; hypothetical protein complement(3198327..3198818) Delftia acidovorans SPH-1 5748495 YP_001563937.1 CDS Daci_2914 NC_010002.1 3198867 3199253 R KEGG: ajs:Ajs_2595 hypothetical protein; hypothetical protein complement(3198867..3199253) Delftia acidovorans SPH-1 5748496 YP_001563938.1 CDS Daci_2915 NC_010002.1 3199250 3201448 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(3199250..3201448) Delftia acidovorans SPH-1 5748497 YP_001563939.1 CDS Daci_2916 NC_010002.1 3201488 3201952 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ajs:Ajs_2593 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 3201488..3201952 Delftia acidovorans SPH-1 5748498 YP_001563940.1 CDS Daci_2917 NC_010002.1 3202025 3202828 D KEGG: ajs:Ajs_2592 ABC-type transport system ipermease component; ABC transporter permease 3202025..3202828 Delftia acidovorans SPH-1 5748499 YP_001563941.1 CDS Daci_2918 NC_010002.1 3202894 3203886 D PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein; hypothetical protein 3202894..3203886 Delftia acidovorans SPH-1 5748500 YP_001563942.1 CDS Daci_2919 NC_010002.1 3203883 3204617 D KEGG: ajs:Ajs_2590 hypothetical protein; hypothetical protein 3203883..3204617 Delftia acidovorans SPH-1 5748501 YP_001563943.1 CDS Daci_2920 NC_010002.1 3205076 3206104 R PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type; porin complement(3205076..3206104) Delftia acidovorans SPH-1 5748502 YP_001563944.1 CDS Daci_2921 NC_010002.1 3206583 3207272 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_0011 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3206583..3207272 Delftia acidovorans SPH-1 5748503 YP_001563945.1 CDS Daci_2922 NC_010002.1 3207297 3209948 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_0010 multi-sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase complement(3207297..3209948) Delftia acidovorans SPH-1 5748504 YP_001563946.1 CDS Daci_2923 NC_010002.1 3210161 3211489 D PFAM: sodium:dicarboxylate symporter; KEGG: ajs:Ajs_0009 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3210161..3211489 Delftia acidovorans SPH-1 5748505 YP_001563947.1 CDS Daci_2924 NC_010002.1 3211578 3212750 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RSc1248 hypothetical protein; oxidoreductase domain-containing protein complement(3211578..3212750) Delftia acidovorans SPH-1 5748506 YP_001563948.1 CDS Daci_2925 NC_010002.1 3212762 3213775 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RSc1246 putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein; inositol 2-dehydrogenase complement(3212762..3213775) Delftia acidovorans SPH-1 5748507 YP_001563949.1 CDS Daci_2926 NC_010002.1 3213791 3214612 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc1245 putative protein implicated in myo-inositol catabolique pathway; xylose isomerase domain-containing protein complement(3213791..3214612) Delftia acidovorans SPH-1 5748508 YP_001563950.1 CDS Daci_2927 NC_010002.1 3214622 3215545 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4571 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein complement(3214622..3215545) Delftia acidovorans SPH-1 5748509 YP_001563951.1 CDS Daci_2928 NC_010002.1 3215570 3216625 R PFAM: inner-membrane translocator; KEGG: rso:RSc1243 probable sugar transmembrane ABC transporter protein; monosaccharide-transporting ATPase complement(3215570..3216625) Delftia acidovorans SPH-1 5748510 YP_001563952.1 CDS Daci_2929 NC_010002.1 3216654 3218219 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1305 ABC transporter related; ABC transporter-like protein complement(3216654..3218219) Delftia acidovorans SPH-1 5748511 YP_001563953.1 CDS Daci_2930 NC_010002.1 3218223 3219200 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1241 putative rhizopine-binding precursor signal peptide protein; periplasmic-binding protein/LacI transcriptional regulator complement(3218223..3219200) Delftia acidovorans SPH-1 5748512 YP_001563954.1 CDS Daci_2931 NC_010002.1 3219455 3221338 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1239 putative acetolactate synthase protein; thiamine pyrophosphate protein central region 3219455..3221338 Delftia acidovorans SPH-1 5748513 YP_001563955.1 CDS Daci_2932 NC_010002.1 3221404 3222330 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bvi:Bcep1808_1385 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 3221404..3222330 Delftia acidovorans SPH-1 5748514 YP_001563956.1 CDS Daci_2933 NC_010002.1 3222375 3223472 D PFAM: porin Gram-negative type; KEGG: rso:RSc1236 probable outer membrane porin lipoprotein transmembrane; porin 3222375..3223472 Delftia acidovorans SPH-1 5748515 YP_001563957.1 CDS Daci_2934 NC_010002.1 3223533 3224582 D KEGG: pen:PSEEN2966 hypothetical protein; hypothetical protein 3223533..3224582 Delftia acidovorans SPH-1 5748516 YP_001563958.1 CDS Daci_2935 NC_010002.1 3224600 3225745 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3224600..3225745) Delftia acidovorans SPH-1 5748517 YP_001563959.1 CDS Daci_2936 NC_010002.1 3225772 3226479 R KEGG: xau:Xaut_1752 cell morphology protein; cell morphology protein complement(3225772..3226479) Delftia acidovorans SPH-1 5748518 YP_001563960.1 CDS Daci_2937 NC_010002.1 3226476 3227960 R PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB4380 putative D-alanine-D-alanyl carrier protein ligase; AMP-dependent synthetase/ligase complement(3226476..3227960) Delftia acidovorans SPH-1 5748519 YP_001563961.1 CDS Daci_2938 NC_010002.1 3228018 3228257 R PFAM: phosphopantetheine-binding; KEGG: bpa:BPP3911 acyl carrier protein; phosphopantetheine-binding protein complement(3228018..3228257) Delftia acidovorans SPH-1 5748520 YP_001563962.1 CDS Daci_2939 NC_010002.1 3228279 3229859 R PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: aba:Acid345_4412 membrane bound O-acyl transferase, MBOAT; membrane bound O-acyl transferase MBOAT family protein complement(3228279..3229859) Delftia acidovorans SPH-1 5748521 YP_001563963.1 CDS Daci_2940 NC_010002.1 3229873 3231006 R KEGG: xau:Xaut_1750 cell morphology protein; cell morphology protein complement(3229873..3231006) Delftia acidovorans SPH-1 5748522 YP_001563964.1 CDS Daci_2941 NC_010002.1 3231011 3232051 R KEGG: xau:Xaut_1749 hypothetical protein; hypothetical protein complement(3231011..3232051) Delftia acidovorans SPH-1 5748523 YP_001563965.1 CDS Daci_2942 NC_010002.1 3232109 3234976 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mms:mma_2622 hypothetical protein; hypothetical protein complement(3232109..3234976) Delftia acidovorans SPH-1 5748524 YP_001563966.1 CDS Daci_2943 NC_010002.1 3234973 3236694 R KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B; bacteriophage N4 adsorption protein B complement(3234973..3236694) Delftia acidovorans SPH-1 5748525 YP_001563967.1 CDS Daci_2944 NC_010002.1 3236878 3238962 R KEGG: psp:PSPPH_1082 hypothetical protein; hypothetical protein complement(3236878..3238962) Delftia acidovorans SPH-1 5748526 YP_001563968.1 CDS Daci_2945 NC_010002.1 3239041 3240243 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mms:mma_2625 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(3239041..3240243) Delftia acidovorans SPH-1 5748527 YP_001563969.1 CDS Daci_2946 NC_010002.1 3241574 3242632 D KEGG: mxa:MXAN_3435 hypothetical protein; hypothetical protein 3241574..3242632 Delftia acidovorans SPH-1 5748529 YP_001563970.1 CDS Daci_2947 NC_010002.1 3242678 3243778 D hypothetical protein 3242678..3243778 Delftia acidovorans SPH-1 5748530 YP_001563971.1 CDS Daci_2948 NC_010002.1 3243843 3245669 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbe:Cbei_2655 TPR repeat-containing protein; hypothetical protein 3243843..3245669 Delftia acidovorans SPH-1 5748531 YP_001563972.1 CDS Daci_2949 NC_010002.1 3245693 3246910 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2534 major facilitator superfamily MFS_1; major facilitator transporter complement(3245693..3246910) Delftia acidovorans SPH-1 5748532 YP_001563973.1 CDS Daci_2950 NC_010002.1 3246963 3247973 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2533 transcriptional regulator, LysR family; LysR family transcriptional regulator 3246963..3247973 Delftia acidovorans SPH-1 5748533 YP_001563974.1 CDS Daci_2951 NC_010002.1 3248094 3248642 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RS00872 probable extracytoplasmic function sigma factor transcription regulator protein; ECF subfamily RNA polymerase sigma-24 factor 3248094..3248642 Delftia acidovorans SPH-1 5748534 YP_001563975.1 CDS Daci_2952 NC_010002.1 3248632 3249591 D PFAM: FecR protein; KEGG: pau:PA14_46650 putative transmembrane sensor; anti-FecI sigma factor FecR 3248632..3249591 Delftia acidovorans SPH-1 5748535 YP_001563976.1 CDS Daci_2953 NC_010002.1 3249803 3252181 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reh:H16_A3182 outer membrane receptor, TonB dependent; TonB-dependent siderophore receptor 3249803..3252181 Delftia acidovorans SPH-1 5748536 YP_001563977.1 CDS Daci_2954 NC_010002.1 3252269 3252532 R KEGG: aav:Aave_3958 hypothetical protein; hypothetical protein complement(3252269..3252532) Delftia acidovorans SPH-1 5748537 YP_001563978.1 CDS Daci_2955 NC_010002.1 3252739 3253032 D KEGG: aav:Aave_3397 hypothetical protein; hypothetical protein 3252739..3253032 Delftia acidovorans SPH-1 5748538 YP_001563979.1 CDS Daci_2956 NC_010002.1 3253119 3255071 D KEGG: mes:Meso_1904 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 3253119..3255071 Delftia acidovorans SPH-1 5748539 YP_001563980.1 CDS Daci_2957 NC_010002.1 3255730 3257751 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: smd:Smed_4035 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator complement(3255730..3257751) Delftia acidovorans SPH-1 5748540 YP_001563981.1 CDS Daci_2958 NC_010002.1 3258000 3259802 D KEGG: atc:AGR_L_284 flavin-containing monooxygenase, putative; flavin-containing monooxygenase 3258000..3259802 Delftia acidovorans SPH-1 5748541 YP_001563982.1 CDS Daci_2959 NC_010002.1 3259818 3260939 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aci:ACIAD1021 putative (R,R)-butanediol dehydrogenase; alcohol dehydrogenase 3259818..3260939 Delftia acidovorans SPH-1 5748542 YP_001563983.1 CDS Daci_2960 NC_010002.1 3261170 3262153 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_2229 probable transcriptional regulator; LysR family transcriptional regulator complement(3261170..3262153) Delftia acidovorans SPH-1 5748544 YP_001563984.1 CDS Daci_2961 NC_010002.1 3262338 3262742 D PFAM: 4-oxalocrotonate tautomerase; KEGG: azo:azo2359 oxaloacetate tautomerase; 4-oxalocrotonate tautomerase 3262338..3262742 Delftia acidovorans SPH-1 5748545 YP_001563985.1 CDS Daci_2962 NC_010002.1 3262788 3263705 R PFAM: band 7 protein; KEGG: aav:Aave_3259 band 7 protein; hypothetical protein complement(3262788..3263705) Delftia acidovorans SPH-1 5748546 YP_001563986.1 CDS Daci_2963 NC_010002.1 3263806 3264231 R PFAM: protein of unknown function DUF107; KEGG: aav:Aave_3258 protein of unknown function DUF107; hypothetical protein complement(3263806..3264231) Delftia acidovorans SPH-1 5748547 YP_001563987.1 CDS Daci_2964 NC_010002.1 3264381 3266996 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ajs:Ajs_2762 lysine decarboxylase; lysine decarboxylase 3264381..3266996 Delftia acidovorans SPH-1 5748548 YP_001563988.1 CDS Daci_2965 NC_010002.1 3267093 3268154 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4957 hypothetical protein; hypothetical protein complement(3267093..3268154) Delftia acidovorans SPH-1 5748549 YP_001563989.1 CDS Daci_2966 NC_010002.1 3268300 3269547 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase; L-carnitine dehydratase/bile acid-inducible protein F complement(3268300..3269547) Delftia acidovorans SPH-1 5748550 YP_001563990.1 CDS Daci_2967 NC_010002.1 3269587 3270582 R PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_3685 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(3269587..3270582) Delftia acidovorans SPH-1 5748551 YP_001563991.1 CDS Daci_2968 NC_010002.1 3270698 3271429 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_4515 transcriptional regulator, IclR family; IclR family transcriptional regulator 3270698..3271429 Delftia acidovorans SPH-1 5748552 YP_001563992.1 CDS Daci_2969 NC_010002.1 3271454 3272374 R PFAM: zinc/iron permease; KEGG: aav:Aave_2663 zinc/iron permease; zinc/iron permease complement(3271454..3272374) Delftia acidovorans SPH-1 5748553 YP_001563993.1 CDS Daci_2970 NC_010002.1 3272410 3273045 R PFAM: manganese and iron superoxide dismutase; KEGG: aav:Aave_2662 superoxide dismutase; superoxide dismutase complement(3272410..3273045) Delftia acidovorans SPH-1 5748554 YP_001563994.1 CDS Daci_2971 NC_010002.1 3273108 3273620 R KEGG: asa:ASA_3720 hypothetical protein; hypothetical protein complement(3273108..3273620) Delftia acidovorans SPH-1 5748555 YP_001563995.1 CDS Daci_2972 NC_010002.1 3273837 3274637 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_1809 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3273837..3274637) Delftia acidovorans SPH-1 5748556 YP_001563996.1 CDS Daci_2973 NC_010002.1 3274750 3276579 D PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_1810 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3274750..3276579 Delftia acidovorans SPH-1 5748557 YP_001563997.1 CDS Daci_2974 NC_010002.1 3276676 3277704 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3276676..3277704 Delftia acidovorans SPH-1 5748558 YP_001563998.1 CDS Daci_2975 NC_010002.1 3277836 3278975 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1812 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3277836..3278975 Delftia acidovorans SPH-1 5748559 YP_001563999.1 CDS Daci_2976 NC_010002.1 3278972 3280660 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_1813 ABC transporter related; ABC transporter-like protein 3278972..3280660 Delftia acidovorans SPH-1 5748560 YP_001564000.1 CDS Daci_2977 NC_010002.1 3280679 3281305 R PFAM: Lipocalin family protein; KEGG: aav:Aave_3140 lipocalin family protein; lipocalin family protein complement(3280679..3281305) Delftia acidovorans SPH-1 5748561 YP_001564001.1 CDS Daci_2978 NC_010002.1 3281550 3281711 D KEGG: aav:Aave_0776 hypothetical protein; hypothetical protein 3281550..3281711 Delftia acidovorans SPH-1 5748562 YP_001564002.1 CDS Daci_2979 NC_010002.1 3281992 3282297 D KEGG: net:Neut_2619 hypothetical protein; hypothetical protein 3281992..3282297 Delftia acidovorans SPH-1 5748563 YP_001564003.1 CDS Daci_2980 NC_010002.1 3282305 3283705 D PFAM: integrase family protein; KEGG: pol:Bpro_1705 phage integrase; integrase family protein 3282305..3283705 Delftia acidovorans SPH-1 5748564 YP_001564004.1 CDS Daci_2981 NC_010002.1 3283715 3286324 D PFAM: integrase family protein; KEGG: shn:Shewana3_2916 hypothetical protein; integrase family protein 3283715..3286324 Delftia acidovorans SPH-1 5748565 YP_001564005.1 CDS Daci_2982 NC_010002.1 3286321 3287001 D KEGG: pol:Bpro_1703 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3286321..3287001 Delftia acidovorans SPH-1 5748566 YP_001564006.1 CDS Daci_2983 NC_010002.1 3287182 3287517 R KEGG: ajs:Ajs_0638 transcriptional regulatory protein, MerR family; MerR family transcriptional regulator complement(3287182..3287517) Delftia acidovorans SPH-1 5748567 YP_001564007.1 CDS Daci_2984 NC_010002.1 3287514 3288509 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: ajs:Ajs_0639 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(3287514..3288509) Delftia acidovorans SPH-1 5748568 YP_001564008.1 CDS Daci_2985 NC_010002.1 3288678 3289523 D KEGG: aav:Aave_3388 cytochrome c553-like protein; cytochrome c553-like protein 3288678..3289523 Delftia acidovorans SPH-1 5748569 YP_001564009.1 CDS Daci_2986 NC_010002.1 3289520 3290863 D PFAM: cytochrome c class I; KEGG: aav:Aave_3387 cytochrome c, class I; gluconate 2-dehydrogenase 3289520..3290863 Delftia acidovorans SPH-1 5748570 YP_001564010.1 CDS Daci_2987 NC_010002.1 3290873 3291274 D PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein; thioredoxin domain-containing protein 3290873..3291274 Delftia acidovorans SPH-1 5748571 YP_001564011.1 CDS Daci_2988 NC_010002.1 3291540 3292118 D PFAM: protein of unknown function DUF150; KEGG: aav:Aave_3385 protein of unknown function DUF150; hypothetical protein 3291540..3292118 Delftia acidovorans SPH-1 5748572 YP_001564012.1 CDS Daci_2989 NC_010002.1 3292206 3293693 D KEGG: aav:Aave_3384 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; SMART: KH domain protein; NusA antitermination factor 3292206..3293693 Delftia acidovorans SPH-1 5748573 YP_001564013.1 CDS infB NC_010002.1 3293717 3296578 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3293717..3296578 Delftia acidovorans SPH-1 5748574 YP_001564014.1 CDS rbfA NC_010002.1 3296585 3296956 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3296585..3296956 Delftia acidovorans SPH-1 5748575 YP_001564015.1 CDS truB NC_010002.1 3296961 3297926 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3296961..3297926 Delftia acidovorans SPH-1 5748576 YP_001564016.1 CDS Daci_2993 NC_010002.1 3297950 3299776 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: ajs:Ajs_2558 GTP-binding protein TypA; GTP-binding protein TypA 3297950..3299776 Delftia acidovorans SPH-1 5748577 YP_001564017.1 CDS Daci_2994 NC_010002.1 3299931 3300818 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0708 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(3299931..3300818) Delftia acidovorans SPH-1 5748578 YP_001564018.1 CDS Daci_2995 NC_010002.1 3300902 3302098 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3300902..3302098 Delftia acidovorans SPH-1 5748579 YP_001564019.1 CDS Daci_2996 NC_010002.1 3302100 3302597 D KEGG: ajs:Ajs_0059 hypothetical protein; hypothetical protein 3302100..3302597 Delftia acidovorans SPH-1 5748580 YP_001564020.1 CDS Daci_2997 NC_010002.1 3302640 3303671 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0060 uncharacterized protein UPF0065; hypothetical protein 3302640..3303671 Delftia acidovorans SPH-1 5748581 YP_001564021.1 CDS Daci_2998 NC_010002.1 3303814 3304905 D catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 3303814..3304905 Delftia acidovorans SPH-1 5748582 YP_001564022.1 CDS Daci_2999 NC_010002.1 3304972 3305694 R PFAM: regulatory protein TetR; KEGG: asa:ASA_1100 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3304972..3305694) Delftia acidovorans SPH-1 5748583 YP_001564023.1 CDS Daci_3000 NC_010002.1 3305794 3306489 D KEGG: asa:ASA_1101 hypothetical protein; hypothetical protein 3305794..3306489 Delftia acidovorans SPH-1 5748584 YP_001564024.1 CDS Daci_3001 NC_010002.1 3306505 3307344 R KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor complement(3306505..3307344) Delftia acidovorans SPH-1 5748585 YP_001564025.1 CDS Daci_3002 NC_010002.1 3307355 3307930 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2554 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3307355..3307930) Delftia acidovorans SPH-1 5748586 YP_001564026.1 CDS Daci_3003 NC_010002.1 3307961 3308377 R PFAM: Secreted repeat of unknown function; KEGG: ajs:Ajs_2553 secreted repeat of unknown function; hypothetical protein complement(3307961..3308377) Delftia acidovorans SPH-1 5748587 YP_001564027.1 CDS smpB NC_010002.1 3308487 3309008 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(3308487..3309008) Delftia acidovorans SPH-1 5748588 YP_001564028.1 CDS Daci_3005 NC_010002.1 3309075 3309581 D PFAM: cyclase/dehydrase; KEGG: aav:Aave_3373 cyclase/dehydrase; cyclase/dehydrase 3309075..3309581 Delftia acidovorans SPH-1 5748589 YP_001564029.1 CDS Daci_3006 NC_010002.1 3309574 3309918 D PFAM: protein of unknown function UPF0125; KEGG: aav:Aave_3372 protein of unknown function UPF0125; hypothetical protein 3309574..3309918 Delftia acidovorans SPH-1 5748590 YP_001564030.1 CDS Daci_3007 NC_010002.1 3309931 3310485 R KEGG: ajs:Ajs_2549 hypothetical protein; hypothetical protein complement(3309931..3310485) Delftia acidovorans SPH-1 5748591 YP_001564031.1 CDS Daci_3008 NC_010002.1 3310622 3312097 D KEGG: ajs:Ajs_2548 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase NPD; inosine-5'-monophosphate dehydrogenase 3310622..3312097 Delftia acidovorans SPH-1 5748592 YP_001564032.1 CDS Daci_3009 NC_010002.1 3312187 3313881 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(3312187..3313881) Delftia acidovorans SPH-1 5748593 YP_001564033.1 CDS Daci_3010 NC_010002.1 3313975 3314904 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_1922 transcriptional regulator, LysR family; LysR family transcriptional regulator 3313975..3314904 Delftia acidovorans SPH-1 5748594 YP_001564034.1 CDS Daci_3011 NC_010002.1 3315045 3315323 D TIGRFAM: prevent-host-death family protein; KEGG: aav:Aave_3369 prevent-host-death family protein; prevent-host-death family protein 3315045..3315323 Delftia acidovorans SPH-1 5748595 YP_001564035.1 CDS Daci_3012 NC_010002.1 3315320 3315754 D KEGG: aav:Aave_3368 hypothetical protein; hypothetical protein 3315320..3315754 Delftia acidovorans SPH-1 5748596 YP_001564036.1 CDS guaA NC_010002.1 3315780 3317402 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3315780..3317402 Delftia acidovorans SPH-1 5748597 YP_001564037.1 CDS Daci_3014 NC_010002.1 3317569 3317796 R hypothetical protein complement(3317569..3317796) Delftia acidovorans SPH-1 5748598 YP_001564038.1 CDS Daci_3015 NC_010002.1 3318222 3319556 D PFAM: peptidase M16 domain protein; KEGG: aav:Aave_3753 peptidase M16 domain protein; peptidase M16 domain-containing protein 3318222..3319556 Delftia acidovorans SPH-1 5748599 YP_001564039.1 CDS Daci_3016 NC_010002.1 3319624 3320043 R hypothetical protein complement(3319624..3320043) Delftia acidovorans SPH-1 5748600 YP_001564040.1 CDS Daci_3017 NC_010002.1 3320056 3321036 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0462 uncharacterized protein UPF0065; hypothetical protein complement(3320056..3321036) Delftia acidovorans SPH-1 5748601 YP_001564041.1 CDS Daci_3018 NC_010002.1 3321136 3322086 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0139 transcriptional regulator, LysR family; LysR family transcriptional regulator 3321136..3322086 Delftia acidovorans SPH-1 5748602 YP_001564042.1 CDS Daci_3019 NC_010002.1 3322142 3322441 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: kpn:KPN_04023 hypothetical protein; antibiotic biosynthesis monooxygenase complement(3322142..3322441) Delftia acidovorans SPH-1 5748603 YP_001564043.1 CDS Daci_3020 NC_010002.1 3322445 3323464 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gvi:gll2260 probable oxidoreductase; zinc-binding alcohol dehydrogenase family protein complement(3322445..3323464) Delftia acidovorans SPH-1 5748604 YP_001564044.1 CDS Daci_3021 NC_010002.1 3323524 3324630 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cvi:CV_2245 flavoprotein NADH-dependent oxidoreductase; NADH:flavin oxidoreductase complement(3323524..3324630) Delftia acidovorans SPH-1 5748605 YP_001564045.1 CDS Daci_3022 NC_010002.1 3324851 3325411 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: ajs:Ajs_2025 bifunctional deaminase-reductase domain protein; deaminase-reductase domain-containing protein 3324851..3325411 Delftia acidovorans SPH-1 5748606 YP_001564046.1 CDS Daci_3023 NC_010002.1 3325441 3326496 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4796 LysR-family transcriptional regulator; LysR family transcriptional regulator complement(3325441..3326496) Delftia acidovorans SPH-1 5748607 YP_001564047.1 CDS Daci_3024 NC_010002.1 3326524 3328038 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rha:RHA1_ro01782 probable 4-hydroxyphenylacetic hydroxylase; 4-hydroxyphenylacetate 3-hydroxylase complement(3326524..3328038) Delftia acidovorans SPH-1 5748608 YP_001564048.1 CDS Daci_3025 NC_010002.1 3328038 3329186 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_3336 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3328038..3329186) Delftia acidovorans SPH-1 5748609 YP_001564049.1 CDS Daci_3026 NC_010002.1 3329473 3330390 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_3335 inner-membrane translocator; inner-membrane translocator 3329473..3330390 Delftia acidovorans SPH-1 5748610 YP_001564050.1 CDS Daci_3027 NC_010002.1 3330390 3331571 D PFAM: inner-membrane translocator; KEGG: maq:Maqu_3337 inner-membrane translocator; inner-membrane translocator 3330390..3331571 Delftia acidovorans SPH-1 5748611 YP_001564051.1 CDS Daci_3028 NC_010002.1 3331561 3332397 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG; ABC transporter-like protein 3331561..3332397 Delftia acidovorans SPH-1 5748612 YP_001564052.1 CDS Daci_3029 NC_010002.1 3332390 3333088 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 3332390..3333088 Delftia acidovorans SPH-1 5748613 YP_001564053.1 CDS Daci_3030 NC_010002.1 3333204 3334487 D KEGG: pap:PSPA7_6179 hypothetical protein; hypothetical protein 3333204..3334487 Delftia acidovorans SPH-1 5748614 YP_001564054.1 CDS Daci_3031 NC_010002.1 3334541 3334975 D PFAM: Endoribonuclease L-PSP; KEGG: pap:PSPA7_6178 hypothetical protein; endoribonuclease L-PSP 3334541..3334975 Delftia acidovorans SPH-1 5748615 YP_001564055.1 CDS Daci_3032 NC_010002.1 3335029 3335706 D PFAM: protein of unknown function DUF1028; KEGG: bxe:Bxe_A3464 hypothetical protein; hypothetical protein 3335029..3335706 Delftia acidovorans SPH-1 5748616 YP_001564056.1 CDS Daci_3033 NC_010002.1 3335740 3336657 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1196 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(3335740..3336657) Delftia acidovorans SPH-1 5748617 YP_001564057.1 CDS Daci_3034 NC_010002.1 3336752 3337993 D PFAM: beta-lactamase; KEGG: reh:H16_A1195 beta-lactamase; beta-lactamase 3336752..3337993 Delftia acidovorans SPH-1 5748618 YP_001564058.1 CDS Daci_3035 NC_010002.1 3337990 3339162 D PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_1816 major facilitator superfamily MFS_1; major facilitator transporter 3337990..3339162 Delftia acidovorans SPH-1 5748619 YP_001564059.1 CDS Daci_3036 NC_010002.1 3339191 3341467 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: aav:Aave_2925 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(3339191..3341467) Delftia acidovorans SPH-1 5748620 YP_001564060.1 CDS Daci_3037 NC_010002.1 3341496 3342236 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_2926 diguanylate cyclase; diguanylate cyclase complement(3341496..3342236) Delftia acidovorans SPH-1 5748621 YP_001564061.1 CDS Daci_3038 NC_010002.1 3342236 3342637 R KEGG: aav:Aave_2927 putative lipoprotein; putative lipoprotein complement(3342236..3342637) Delftia acidovorans SPH-1 5748622 YP_001564062.1 CDS Daci_3039 NC_010002.1 3342706 3343287 R KEGG: aav:Aave_2928 hypothetical protein; hypothetical protein complement(3342706..3343287) Delftia acidovorans SPH-1 5748623 YP_001564063.1 CDS Daci_3040 NC_010002.1 3343288 3344520 R PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aav:Aave_2929 serine phosphatase; protein serine/threonine phosphatase complement(3343288..3344520) Delftia acidovorans SPH-1 5748624 YP_001564064.1 CDS Daci_3041 NC_010002.1 3344667 3345668 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bur:Bcep18194_B2065 taurine dioxygenase; taurine dioxygenase 3344667..3345668 Delftia acidovorans SPH-1 5748625 YP_001564065.1 CDS Daci_3042 NC_010002.1 3345678 3345935 R KEGG: aav:Aave_3397 hypothetical protein; hypothetical protein complement(3345678..3345935) Delftia acidovorans SPH-1 5748626 YP_001564066.1 CDS Daci_3043 NC_010002.1 3346125 3347165 D KEGG: aav:Aave_0374 putative mRNA 3-end processing factor; putative mRNA 3-end processing factor 3346125..3347165 Delftia acidovorans SPH-1 5748627 YP_001564067.1 CDS Daci_3044 NC_010002.1 3347162 3348853 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 3347162..3348853 Delftia acidovorans SPH-1 5748628 YP_001564068.1 CDS Daci_3045 NC_010002.1 3348909 3351809 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_0376 DEAD/H associated domain protein; DEAD/DEAH box helicase 3348909..3351809 Delftia acidovorans SPH-1 5748629 YP_001564069.1 CDS Daci_3046 NC_010002.1 3351826 3352545 D KEGG: aav:Aave_0377 metallophosphoesterase; metallophosphoesterase 3351826..3352545 Delftia acidovorans SPH-1 5748630 YP_001564070.1 CDS Daci_3047 NC_010002.1 3352654 3353271 D KEGG: bam:Bamb_4262 hypothetical protein; hypothetical protein 3352654..3353271 Delftia acidovorans SPH-1 5748631 YP_001564071.1 CDS Daci_3048 NC_010002.1 3353418 3354461 D PFAM: Mg2 transporter protein CorA family protein; KEGG: mms:mma_2655 cation transporter (MIT family); Mg2 transporter protein CorA family protein 3353418..3354461 Delftia acidovorans SPH-1 5748632 YP_001564072.1 CDS Daci_3049 NC_010002.1 3354465 3355979 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane; hypothetical protein complement(3354465..3355979) Delftia acidovorans SPH-1 5748633 YP_001564073.1 CDS Daci_3050 NC_010002.1 3356007 3356597 R KEGG: mms:mma_0439 small permease component of tripartite tricarboxylate transporter; small permease of tripartite tricarboxylate transporter complement(3356007..3356597) Delftia acidovorans SPH-1 5748634 YP_001564074.1 CDS Daci_3051 NC_010002.1 3356609 3357646 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5629 uncharacterized protein UPF0065; hypothetical protein complement(3356609..3357646) Delftia acidovorans SPH-1 5748635 YP_001564075.1 CDS Daci_3052 NC_010002.1 3357752 3358993 R PFAM: aminotransferase class V; KEGG: pol:Bpro_2753 aminotransferase, class V; serine--glyoxylate transaminase complement(3357752..3358993) Delftia acidovorans SPH-1 5748636 YP_001564076.1 CDS Daci_3053 NC_010002.1 3359152 3359841 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_2754 transcriptional regulator, GntR family; GntR family transcriptional regulator 3359152..3359841 Delftia acidovorans SPH-1 5748637 YP_001564077.1 CDS Daci_3054 NC_010002.1 3359838 3362936 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_2755 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 3359838..3362936 Delftia acidovorans SPH-1 5748638 YP_001564078.1 CDS Daci_3055 NC_010002.1 3362974 3363390 D PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 protein of unknown function DUF336; hypothetical protein 3362974..3363390 Delftia acidovorans SPH-1 5748639 YP_001564079.1 CDS Daci_3056 NC_010002.1 3363415 3364872 R PFAM: outer membrane efflux protein; KEGG: pau:PA14_10330 putative outer membrane protein precursor; outer membrane efflux protein complement(3363415..3364872) Delftia acidovorans SPH-1 5748640 YP_001564080.1 CDS Daci_3057 NC_010002.1 3364869 3366920 R PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: xom:XOO_1681 colicin V secretion ABC transporter ATP-binding protein; ABC transporter-like protein complement(3364869..3366920) Delftia acidovorans SPH-1 5748641 YP_001564081.1 CDS Daci_3058 NC_010002.1 3366956 3368467 R KEGG: rbe:RBE_0376 hypothetical protein; hypothetical protein complement(3366956..3368467) Delftia acidovorans SPH-1 5748642 YP_001564082.1 CDS Daci_3059 NC_010002.1 3368497 3369393 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: nmc:NMC0891 hypothetical protein; cupin 4 family protein complement(3368497..3369393) Delftia acidovorans SPH-1 5748643 YP_001564083.1 CDS Daci_3060 NC_010002.1 3369390 3370409 R PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3241 radical SAM; radical SAM domain-containing protein complement(3369390..3370409) Delftia acidovorans SPH-1 5748644 YP_001564084.1 CDS Daci_3061 NC_010002.1 3370769 3372043 R PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A3794 membrane-fusion protein; secretion protein HlyD family protein complement(3370769..3372043) Delftia acidovorans SPH-1 5748645 YP_001564085.1 CDS Daci_3062 NC_010002.1 3372335 3373021 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_2754 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3372335..3373021) Delftia acidovorans SPH-1 5748646 YP_001564086.1 CDS Daci_3063 NC_010002.1 3373096 3374199 D PFAM: transglutaminase domain protein; KEGG: aav:Aave_3990 transglutaminase domain protein; transglutaminase domain-containing protein 3373096..3374199 Delftia acidovorans SPH-1 5748647 YP_001564087.1 CDS Daci_3064 NC_010002.1 3374236 3376395 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_1367 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3374236..3376395) Delftia acidovorans SPH-1 5748648 YP_001564088.1 CDS Daci_3065 NC_010002.1 3376716 3377441 R KEGG: ret:RHE_CH02944 hypothetical protein; hypothetical protein complement(3376716..3377441) Delftia acidovorans SPH-1 5748649 YP_001564089.1 CDS Daci_3066 NC_010002.1 3377487 3378314 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rme:Rmet_0007 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3377487..3378314) Delftia acidovorans SPH-1 5748650 YP_001564090.1 CDS Daci_3067 NC_010002.1 3378328 3379686 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mpt:Mpe_A2526 CHR transporter; chromate transporter complement(3378328..3379686) Delftia acidovorans SPH-1 5748651 YP_001564091.1 CDS Daci_3068 NC_010002.1 3379782 3380531 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ret:RHE_PE00011 peptide methionine sulfoxide reductase protein; peptide methionine sulfoxide reductase complement(3379782..3380531) Delftia acidovorans SPH-1 5748652 YP_001564092.1 CDS Daci_3069 NC_010002.1 3380566 3382395 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bch:Bcen2424_6244 cytochrome c biogenesis protein, transmembrane region; alkyl hydroperoxide reductase complement(3380566..3382395) Delftia acidovorans SPH-1 5748653 YP_001564093.1 CDS Daci_3070 NC_010002.1 3382412 3382912 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bra:BRADO5066 peptide methionine sulfoxide reductase MsrB; methionine-R-sulfoxide reductase complement(3382412..3382912) Delftia acidovorans SPH-1 5748654 YP_001564094.1 CDS Daci_3071 NC_010002.1 3383080 3383796 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bur:Bcep18194_C6809 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3383080..3383796 Delftia acidovorans SPH-1 5748655 YP_001564095.1 CDS Daci_3072 NC_010002.1 3383798 3385303 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5784 periplasmic sensor signal transduction histidine kinase; histidine kinase 3383798..3385303 Delftia acidovorans SPH-1 5748656 YP_001564096.1 CDS Daci_3073 NC_010002.1 3385392 3387110 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: mpt:Mpe_A3620 putative glutamate synthase; ferredoxin-dependent glutamate synthase 3385392..3387110 Delftia acidovorans SPH-1 5748657 YP_001564097.1 CDS Daci_3074 NC_010002.1 3387225 3387503 D KEGG: reh:H16_B1678 hypothetical protein; hypothetical protein 3387225..3387503 Delftia acidovorans SPH-1 5748658 YP_001564098.1 CDS Daci_3075 NC_010002.1 3387521 3389194 D PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_B1677 iron regulated protein; PepSY-associated TM helix domain-containing protein 3387521..3389194 Delftia acidovorans SPH-1 5748659 YP_001564099.1 CDS Daci_3076 NC_010002.1 3389187 3389504 D KEGG: sbm:Shew185_4236 hypothetical protein; hypothetical protein 3389187..3389504 Delftia acidovorans SPH-1 5748660 YP_001564100.1 CDS Daci_3077 NC_010002.1 3389539 3391806 R KEGG: rca:Rcas_3732 parallel beta-helix repeat; hypothetical protein complement(3389539..3391806) Delftia acidovorans SPH-1 5748661 YP_001564101.1 CDS Daci_3078 NC_010002.1 3392245 3394569 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3635 sensor histidine kinase/response regulator; histidine kinase 3392245..3394569 Delftia acidovorans SPH-1 5748662 YP_001564102.1 CDS Daci_3079 NC_010002.1 3394574 3395785 D PFAM: EAL domain protein; response regulator receiver; KEGG: pfl:PFL_3636 response regulator/EAL domain protein; response regulator receiver modulated diguanylate phosphodiesterase 3394574..3395785 Delftia acidovorans SPH-1 5748663 YP_001564103.1 CDS Daci_3080 NC_010002.1 3395806 3399072 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3637 sensor histidine kinase/response regulator; histidine kinase 3395806..3399072 Delftia acidovorans SPH-1 5748664 YP_001564104.1 CDS Daci_3081 NC_010002.1 3399091 3399744 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mms:mma_0618 positive response regulator for colanic capsule biosynthesis; two component LuxR family transcriptional regulator 3399091..3399744 Delftia acidovorans SPH-1 5748665 YP_001564105.1 CDS Daci_3082 NC_010002.1 3399770 3400015 R hypothetical protein complement(3399770..3400015) Delftia acidovorans SPH-1 5748666 YP_001564106.1 CDS Daci_3083 NC_010002.1 3400009 3400389 R hypothetical protein complement(3400009..3400389) Delftia acidovorans SPH-1 5748667 YP_001564107.1 CDS Daci_3084 NC_010002.1 3400521 3402680 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein; methyl-accepting chemotaxis sensory transducer 3400521..3402680 Delftia acidovorans SPH-1 5748668 YP_001564108.1 CDS Daci_3085 NC_010002.1 3402814 3403098 D KEGG: pae:PA0092 hypothetical protein; hypothetical protein 3402814..3403098 Delftia acidovorans SPH-1 5748669 YP_001564109.1 CDS Daci_3086 NC_010002.1 3403138 3403797 R hypothetical protein complement(3403138..3403797) Delftia acidovorans SPH-1 5748670 YP_001564110.1 CDS Daci_3087 NC_010002.1 3403907 3404860 R PFAM: BRO domain protein; KEGG: stp:Strop_4013 BRO domain protein domain protein; prophage antirepressor complement(3403907..3404860) Delftia acidovorans SPH-1 5748671 YP_001564111.1 CDS Daci_3088 NC_010002.1 3405759 3407420 D KEGG: sal:Sala_1435 hypothetical protein; hypothetical protein 3405759..3407420 Delftia acidovorans SPH-1 5748672 YP_001564112.1 CDS Daci_3089 NC_010002.1 3408065 3408754 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: hsa:84000 transmembrane protease, serine 13; peptidase S1 and S6 chymotrypsin/Hap 3408065..3408754 Delftia acidovorans SPH-1 5748673 YP_001564113.1 CDS Daci_3090 NC_010002.1 3409778 3410221 D PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4532 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3409778..3410221 Delftia acidovorans SPH-1 5748674 YP_001564114.1 CDS Daci_3091 NC_010002.1 3410197 3410547 D PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein 3410197..3410547 Delftia acidovorans SPH-1 5748675 YP_001564115.1 CDS Daci_3092 NC_010002.1 3410649 3412244 D PFAM: transposase IS66; KEGG: pna:Pnap_2521 transposase IS66; transposase IS66 3410649..3412244 Delftia acidovorans SPH-1 5748676 YP_001564116.1 CDS Daci_3093 NC_010002.1 3412278 3413081 R TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: bvi:Bcep1808_2979 YecA family protein; yecA family protein complement(3412278..3413081) Delftia acidovorans SPH-1 5748677 YP_001564117.1 CDS Daci_3094 NC_010002.1 3413273 3413611 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(3413273..3413611) Delftia acidovorans SPH-1 5748678 YP_001564118.1 CDS Daci_3095 NC_010002.1 3413671 3414096 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(3413671..3414096) Delftia acidovorans SPH-1 5748679 YP_001564119.1 CDS Daci_3096 NC_010002.1 3414557 3415249 D PFAM: protein of unknown function DUF1353; KEGG: sse:Ssed_2204 hypothetical protein; hypothetical protein 3414557..3415249 Delftia acidovorans SPH-1 5748680 YP_001564120.1 CDS Daci_3097 NC_010002.1 3415320 3416198 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: net:Neut_1623 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3415320..3416198 Delftia acidovorans SPH-1 5748681 YP_001564121.1 CDS Daci_3098 NC_010002.1 3416287 3416580 D hypothetical protein 3416287..3416580 Delftia acidovorans SPH-1 5748682 YP_001564122.1 CDS Daci_3099 NC_010002.1 3417017 3417997 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: pfl:PFL_1558 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3417017..3417997) Delftia acidovorans SPH-1 5748683 YP_001564123.1 CDS Daci_3100 NC_010002.1 3418089 3418412 R PFAM: helix-turn-helix HxlR type; KEGG: bch:Bcen2424_3397 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(3418089..3418412) Delftia acidovorans SPH-1 5748684 YP_001564124.1 CDS Daci_3101 NC_010002.1 3418563 3419195 D PFAM: Glutathione S-transferase domain; KEGG: reh:H16_B0451 glutathione S-transferase; glutathione S-transferase domain-containing protein 3418563..3419195 Delftia acidovorans SPH-1 5748685 YP_001564125.1 CDS Daci_3102 NC_010002.1 3419327 3420337 R hypothetical protein complement(3419327..3420337) Delftia acidovorans SPH-1 5748686 YP_001564126.1 CDS Daci_3103 NC_010002.1 3420409 3421722 R KEGG: xcb:XC_0115 hypothetical protein; hypothetical protein complement(3420409..3421722) Delftia acidovorans SPH-1 5748687 YP_001564127.1 CDS Daci_3104 NC_010002.1 3422246 3422737 R PFAM: regulatory protein LuxR; KEGG: bvi:Bcep1808_3676 response regulator receiver protein; LuxR family transcriptional regulator complement(3422246..3422737) Delftia acidovorans SPH-1 5748688 YP_001564128.1 CDS Daci_3105 NC_010002.1 3423428 3423970 R PFAM: regulatory protein MarR; KEGG: eca:ECA2036 regulatory protein; MarR family transcriptional regulator complement(3423428..3423970) Delftia acidovorans SPH-1 5748689 YP_001564129.1 CDS Daci_3106 NC_010002.1 3424032 3424931 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2035 regulatory protein; hypothetical protein 3424032..3424931 Delftia acidovorans SPH-1 5748690 YP_001564130.1 CDS Daci_3107 NC_010002.1 3424977 3425612 D PFAM: nitroreductase; KEGG: hch:HCH_03586 nitroreductase; nitroreductase 3424977..3425612 Delftia acidovorans SPH-1 5748691 YP_001564131.1 CDS Daci_3108 NC_010002.1 3425688 3426311 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: pfl:PFL_3631 RibD C-terminal domain; deaminase-reductase domain-containing protein 3425688..3426311 Delftia acidovorans SPH-1 5748692 YP_001564132.1 CDS Daci_3109 NC_010002.1 3426304 3426921 D PFAM: regulatory protein TetR; KEGG: pfl:PFL_3630 hypothetical protein; TetR family transcriptional regulator 3426304..3426921 Delftia acidovorans SPH-1 5748693 YP_001564133.1 CDS Daci_3110 NC_010002.1 3427001 3427360 R hypothetical protein complement(3427001..3427360) Delftia acidovorans SPH-1 5748694 YP_001564134.1 CDS Daci_3111 NC_010002.1 3427571 3428065 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3427571..3428065 Delftia acidovorans SPH-1 5748695 YP_001564135.1 CDS Daci_3112 NC_010002.1 3428150 3430213 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2217 putative TonB-dependent receptor; TonB-dependent receptor 3428150..3430213 Delftia acidovorans SPH-1 5748696 YP_001564136.1 CDS Daci_3113 NC_010002.1 3430225 3430941 D KEGG: azo:azo2218 putative cobalt transport system, periplasmic-binding protein; putative cobalt transport system, periplasmic-binding protein 3430225..3430941 Delftia acidovorans SPH-1 5748697 YP_001564137.1 CDS Daci_3114 NC_010002.1 3430995 3432017 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_1031 uncharacterized protein UPF0065; hypothetical protein complement(3430995..3432017) Delftia acidovorans SPH-1 5748698 YP_001564138.1 CDS Daci_3115 NC_010002.1 3432014 3433336 R PFAM: sulfatase; KEGG: bbr:BB1025 probable sulfatase; cerebroside-sulfatase complement(3432014..3433336) Delftia acidovorans SPH-1 5748699 YP_001564139.1 CDS Daci_3116 NC_010002.1 3433486 3434382 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1024 LysR-family transcriptional regulator; LysR family transcriptional regulator 3433486..3434382 Delftia acidovorans SPH-1 5748700 YP_001564140.1 CDS Daci_3117 NC_010002.1 3434440 3435738 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(3434440..3435738) Delftia acidovorans SPH-1 5748701 YP_001564141.1 CDS Daci_3118 NC_010002.1 3435853 3436338 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bbr:BB3050 leucine-responsive regulatory protein; AsnC family transcriptional regulator 3435853..3436338 Delftia acidovorans SPH-1 5748702 YP_001564142.1 CDS Daci_3119 NC_010002.1 3436671 3437900 D TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: rca:Rcas_0471 conserved repeat domain; hypothetical protein 3436671..3437900 Delftia acidovorans SPH-1 5748703 YP_001564143.1 CDS Daci_3120 NC_010002.1 3437926 3438786 R PFAM: metallophosphoesterase; KEGG: aav:Aave_3458 metallophosphoesterase; metallophosphoesterase complement(3437926..3438786) Delftia acidovorans SPH-1 5748704 YP_001564144.1 CDS Daci_3121 NC_010002.1 3438773 3439834 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_3457 ABC transporter-related protein; ABC transporter-like protein complement(3438773..3439834) Delftia acidovorans SPH-1 5748705 YP_001564145.1 CDS Daci_3122 NC_010002.1 3439824 3440708 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3456 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3439824..3440708) Delftia acidovorans SPH-1 5748706 YP_001564146.1 CDS Daci_3123 NC_010002.1 3440711 3441568 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3455 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3440711..3441568) Delftia acidovorans SPH-1 5748707 YP_001564147.1 CDS Daci_3124 NC_010002.1 3441565 3442602 R PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3454 putative periplasmic solute-binding protein; extracellular solute-binding protein complement(3441565..3442602) Delftia acidovorans SPH-1 5748708 YP_001564148.1 CDS Daci_3125 NC_010002.1 3442682 3443596 R PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: aav:Aave_3453 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(3442682..3443596) Delftia acidovorans SPH-1 5748709 YP_001564149.1 CDS Daci_3126 NC_010002.1 3443759 3444649 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0212 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3443759..3444649) Delftia acidovorans SPH-1 5748710 YP_001564150.1 CDS Daci_3127 NC_010002.1 3444678 3445769 D PFAM: conserved hypothetical protein; KEGG: bbr:BB2823 hypothetical protein; hypothetical protein 3444678..3445769 Delftia acidovorans SPH-1 5748711 YP_001564151.1 CDS Daci_3128 NC_010002.1 3445788 3446741 D PFAM: intradiol ring-cleavage dioxygenase; KEGG: bja:blr0926 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 3445788..3446741 Delftia acidovorans SPH-1 5748712 YP_001564152.1 CDS Daci_3129 NC_010002.1 3446755 3447555 D KEGG: pol:Bpro_0971 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3446755..3447555 Delftia acidovorans SPH-1 5748713 YP_001564153.1 CDS Daci_3130 NC_010002.1 3447577 3448374 R PFAM: DNA polymerase beta domain protein region; KEGG: pfl:PFL_2430 hypothetical protein; DNA polymerase subunit beta complement(3447577..3448374) Delftia acidovorans SPH-1 5748714 YP_001564154.1 CDS Daci_3131 NC_010002.1 3448544 3449932 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: ppf:Pput_0685 gluconate transporter; gluconate transporter 3448544..3449932 Delftia acidovorans SPH-1 5748715 YP_001564155.1 CDS Daci_3132 NC_010002.1 3450446 3450709 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3450446..3450709 Delftia acidovorans SPH-1 5748716 YP_001564156.1 CDS Daci_3133 NC_010002.1 3450867 3451181 R TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_0540 hypothetical protein; pentapeptide MXKDX repeat-containing protein complement(3450867..3451181) Delftia acidovorans SPH-1 5748717 YP_001564157.1 CDS Daci_3134 NC_010002.1 3451287 3452078 R PFAM: oxidoreductase molybdopterin binding; KEGG: dar:Daro_2592 oxidoreductase, molybdopterin binding; molybdopterin-binding oxidoreductase complement(3451287..3452078) Delftia acidovorans SPH-1 5748718 YP_001564158.1 CDS Daci_3135 NC_010002.1 3452075 3452728 R KEGG: mms:mma_3541 thiosulfate reductase cytochrome b subunit (membrane anchoring protein); thiosulfate reductase cytochrome subunit B complement(3452075..3452728) Delftia acidovorans SPH-1 5748719 YP_001564159.1 CDS Daci_3136 NC_010002.1 3452798 3453721 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2495 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(3452798..3453721) Delftia acidovorans SPH-1 5748720 YP_001564160.1 CDS Daci_3137 NC_010002.1 3453836 3454789 D PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_6280 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3453836..3454789 Delftia acidovorans SPH-1 5748721 YP_001564161.1 CDS Daci_3138 NC_010002.1 3454786 3455964 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2493 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 3454786..3455964 Delftia acidovorans SPH-1 5748722 YP_001564162.1 CDS Daci_3139 NC_010002.1 3456042 3457025 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_1121 uncharacterized protein UPF0065; hypothetical protein 3456042..3457025 Delftia acidovorans SPH-1 5748723 YP_001564163.1 CDS Daci_3140 NC_010002.1 3457228 3457539 D hypothetical protein 3457228..3457539 Delftia acidovorans SPH-1 5748724 YP_001564164.1 CDS Daci_3141 NC_010002.1 3457536 3457946 D KEGG: plu:plu2078 hypothetical protein; hypothetical protein 3457536..3457946 Delftia acidovorans SPH-1 5748725 YP_001564165.1 CDS Daci_3142 NC_010002.1 3458019 3458474 D KEGG: pca:Pcar_0362 hypothetical protein; hypothetical protein 3458019..3458474 Delftia acidovorans SPH-1 5748726 YP_001564166.1 CDS Daci_3143 NC_010002.1 3458558 3459490 D PFAM: intradiol ring-cleavage dioxygenase; KEGG: nar:Saro_1876 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 3458558..3459490 Delftia acidovorans SPH-1 5748727 YP_001564167.1 CDS Daci_3144 NC_010002.1 3459503 3461152 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_1494 integral membrane sensor signal transduction histidine kinase; histidine kinase 3459503..3461152 Delftia acidovorans SPH-1 5748728 YP_001564168.1 CDS Daci_3145 NC_010002.1 3461149 3461844 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_1493 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3461149..3461844 Delftia acidovorans SPH-1 5748729 YP_001564169.1 CDS Daci_3146 NC_010002.1 3461872 3463182 R KEGG: pfl:PFL_3619 monooxygenase, NtaA/SnaA/SoxA family; NtaA/SnaA/SoxA family monooxygenase complement(3461872..3463182) Delftia acidovorans SPH-1 5748730 YP_001564170.1 CDS Daci_3147 NC_010002.1 3463202 3465337 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_10200 putative TonB-dependent receptor protein; TonB-dependent receptor complement(3463202..3465337) Delftia acidovorans SPH-1 5748731 YP_001564171.1 CDS Daci_3148 NC_010002.1 3465509 3466300 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pau:PA14_10190 putative transcriptional regulator; IclR family transcriptional regulator 3465509..3466300 Delftia acidovorans SPH-1 5748732 YP_001564172.1 CDS Daci_3149 NC_010002.1 3466331 3467146 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3622 ferric enterobactin transport protein FepC PA4158; ABC transporter-like protein complement(3466331..3467146) Delftia acidovorans SPH-1 5748733 YP_001564173.1 CDS Daci_3150 NC_010002.1 3467197 3468285 D with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic-binding protein 3467197..3468285 Delftia acidovorans SPH-1 5748734 YP_001564174.1 CDS Daci_3151 NC_010002.1 3468289 3469353 D PFAM: transport system permease protein; KEGG: pfl:PFL_3624 ferric vibriobactin ABC transporter, permease protein VC0777; transport system permease 3468289..3469353 Delftia acidovorans SPH-1 5748735 YP_001564175.1 CDS Daci_3152 NC_010002.1 3469350 3470390 D PFAM: transport system permease protein; KEGG: pfl:PFL_3625 ferric vibriobactin ABC transporter, permease protein VC0778; transport system permease 3469350..3470390 Delftia acidovorans SPH-1 5748736 YP_001564176.1 CDS Daci_3153 NC_010002.1 3470438 3470809 R KEGG: rso:RSc1866 hypothetical protein; hypothetical protein complement(3470438..3470809) Delftia acidovorans SPH-1 5748737 YP_001564177.1 CDS Daci_3154 NC_010002.1 3470953 3471261 D PFAM: helix-turn-helix domain protein; KEGG: sgl:SG0777 hypothetical protein; XRE family transcriptional regulator 3470953..3471261 Delftia acidovorans SPH-1 5748738 YP_001564178.1 CDS Daci_3155 NC_010002.1 3471357 3472349 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sun:SUN_2434 5-methylcytosine-specific restriction enzyme A; HNH endonuclease complement(3471357..3472349) Delftia acidovorans SPH-1 5748739 YP_001564179.1 CDS Daci_3156 NC_010002.1 3472567 3473904 R KEGG: rme:Rmet_3347 hypothetical protein; hypothetical protein complement(3472567..3473904) Delftia acidovorans SPH-1 5748740 YP_001564180.1 CDS Daci_3157 NC_010002.1 3474949 3475425 D KEGG: pfl:PFL_2777 Ypar31 protein; Ypar31 protein 3474949..3475425 Delftia acidovorans SPH-1 5748741 YP_001564181.1 CDS Daci_3158 NC_010002.1 3475506 3475952 R KEGG: aav:Aave_4020 hypothetical protein; hypothetical protein complement(3475506..3475952) Delftia acidovorans SPH-1 5748742 YP_001564182.1 CDS Daci_3159 NC_010002.1 3477139 3477357 D hypothetical protein 3477139..3477357 Delftia acidovorans SPH-1 5748743 YP_001564183.1 CDS Daci_3160 NC_010002.1 3477354 3477962 D KEGG: bch:Bcen2424_0934 lysine exporter protein (LysE/YggA); hypothetical protein 3477354..3477962 Delftia acidovorans SPH-1 5748744 YP_001564184.1 CDS Daci_3161 NC_010002.1 3478003 3478938 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_4698 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3478003..3478938) Delftia acidovorans SPH-1 5748745 YP_001564185.1 CDS Daci_3162 NC_010002.1 3479020 3480039 D KEGG: mmw:Mmwyl1_0268 hypothetical protein; hypothetical protein 3479020..3480039 Delftia acidovorans SPH-1 5748746 YP_001564186.1 CDS Daci_3163 NC_010002.1 3480130 3481134 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_A1018 twin-arginine translocation pathway signal; hypothetical protein 3480130..3481134 Delftia acidovorans SPH-1 5748747 YP_001564187.1 CDS Daci_3164 NC_010002.1 3481235 3482224 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_3216 transcriptional regulator, LysR family; LysR family transcriptional regulator 3481235..3482224 Delftia acidovorans SPH-1 5748748 YP_001564188.1 CDS Daci_3165 NC_010002.1 3482261 3483238 R PFAM: conserved hypothetical protein; KEGG: reh:H16_A3350 probable extra-cytoplasmic solute receptor; hypothetical protein complement(3482261..3483238) Delftia acidovorans SPH-1 5748749 YP_001564189.1 CDS Daci_3166 NC_010002.1 3483272 3484777 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3483272..3484777) Delftia acidovorans SPH-1 5748750 YP_001564190.1 CDS Daci_3167 NC_010002.1 3484774 3485679 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein; short-chain dehydrogenase/reductase SDR complement(3484774..3485679) Delftia acidovorans SPH-1 5748751 YP_001564191.1 CDS Daci_3168 NC_010002.1 3486026 3487213 D PFAM: Integrase catalytic region; KEGG: ppf:Pput_3520 integrase, catalytic region; integrase catalytic subunit 3486026..3487213 Delftia acidovorans SPH-1 5748752 YP_001564192.1 CDS Daci_3169 NC_010002.1 3487464 3488948 R PFAM: cytochrome c class I; KEGG: spe:Spro_4016 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase complement(3487464..3488948) Delftia acidovorans SPH-1 5748753 YP_001564193.1 CDS Daci_3170 NC_010002.1 3488954 3489541 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bur:Bcep18194_B1542 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(3488954..3489541) Delftia acidovorans SPH-1 5748754 YP_001564194.1 CDS Daci_3171 NC_010002.1 3489538 3492459 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_3853 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(3489538..3492459) Delftia acidovorans SPH-1 5748755 YP_001564195.1 CDS metN NC_010002.1 3492893 3493939 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 3492893..3493939 Delftia acidovorans SPH-1 5748756 YP_001564196.1 CDS Daci_3173 NC_010002.1 3493943 3494608 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2344 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3493943..3494608 Delftia acidovorans SPH-1 5748757 YP_001564197.1 CDS Daci_3174 NC_010002.1 3494688 3495497 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 lipoprotein, YaeC family; YaeC family lipoprotein 3494688..3495497 Delftia acidovorans SPH-1 5748758 YP_001564198.1 CDS Daci_3175 NC_010002.1 3495502 3496032 D PFAM: Acireductone dioxygenase ARD; Cupin 2 conserved barrel domain protein; KEGG: ter:Tery_2668 acireductone dioxygenase, ARD; acireductone dioxygenase ARD 3495502..3496032 Delftia acidovorans SPH-1 5748759 YP_001564199.1 CDS Daci_3176 NC_010002.1 3496029 3497129 D KEGG: ajs:Ajs_2343 hypothetical protein; hypothetical protein 3496029..3497129 Delftia acidovorans SPH-1 5748760 YP_001564200.1 CDS Daci_3177 NC_010002.1 3497189 3498232 R PFAM: Bile acid:sodium symporter; KEGG: ajs:Ajs_3402 hypothetical protein; bile acid:sodium symporter complement(3497189..3498232) Delftia acidovorans SPH-1 5748761 YP_001564201.1 CDS Daci_3178 NC_010002.1 3498351 3499268 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_1461 transcriptional regulator, LysR family; LysR family transcriptional regulator 3498351..3499268 Delftia acidovorans SPH-1 5748762 YP_001564202.1 CDS Daci_3179 NC_010002.1 3499243 3500616 R KEGG: ecp:ECP_3222 putative tagatose 6-phosphate kinase AgaZ; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit complement(3499243..3500616) Delftia acidovorans SPH-1 5748763 YP_001564203.1 CDS Daci_3180 NC_010002.1 3500621 3501589 R PFAM: PfkB domain protein; KEGG: vei:Veis_3416 PfkB domain protein; ribokinase-like domain-containing protein complement(3500621..3501589) Delftia acidovorans SPH-1 5748764 YP_001564204.1 CDS Daci_3181 NC_010002.1 3501650 3502696 R PFAM: inner-membrane translocator; KEGG: vei:Veis_3417 inner-membrane translocator; monosaccharide-transporting ATPase complement(3501650..3502696) Delftia acidovorans SPH-1 5748765 YP_001564205.1 CDS Daci_3182 NC_010002.1 3502693 3504249 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3418 ABC transporter related; ABC transporter-like protein complement(3502693..3504249) Delftia acidovorans SPH-1 5748766 YP_001564206.1 CDS Daci_3183 NC_010002.1 3504276 3505202 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_3419 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator complement(3504276..3505202) Delftia acidovorans SPH-1 5748767 YP_001564207.1 CDS Daci_3184 NC_010002.1 3505237 3506046 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: vei:Veis_3420 regulatory protein, DeoR; DeoR family transcriptional regulator complement(3505237..3506046) Delftia acidovorans SPH-1 5748768 YP_001564208.1 CDS Daci_3185 NC_010002.1 3506157 3506888 R PFAM: glutamine amidotransferase class-I; KEGG: net:Neut_1032 glutamine amidotransferase class-I; class I glutamine amidotransferase complement(3506157..3506888) Delftia acidovorans SPH-1 5748769 YP_001564209.1 CDS Daci_3186 NC_010002.1 3507072 3509132 R KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein complement(3507072..3509132) Delftia acidovorans SPH-1 5748770 YP_001564210.1 CDS Daci_3187 NC_010002.1 3509506 3510408 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: spe:Spro_1817 protein of unknown function DUF6 transmembrane; hypothetical protein complement(3509506..3510408) Delftia acidovorans SPH-1 5748771 YP_001564211.1 CDS Daci_3188 NC_010002.1 3510423 3510992 D PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_46710 putative transcriptional regulator; XRE family transcriptional regulator 3510423..3510992 Delftia acidovorans SPH-1 5748772 YP_001564212.1 CDS Daci_3189 NC_010002.1 3511228 3512388 R KEGG: hch:HCH_06058 hypothetical protein; hypothetical protein complement(3511228..3512388) Delftia acidovorans SPH-1 5748773 YP_001564213.1 CDS Daci_3190 NC_010002.1 3512381 3513016 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: hch:HCH_06063 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase complement(3512381..3513016) Delftia acidovorans SPH-1 5748774 YP_001564214.1 CDS Daci_3191 NC_010002.1 3513013 3513699 R PFAM: adenylylsulfate kinase; KEGG: aav:Aave_4709 adenylyl-sulfate kinase; adenylylsulfate kinase complement(3513013..3513699) Delftia acidovorans SPH-1 5748775 YP_001564215.1 CDS Daci_3192 NC_010002.1 3514419 3515660 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_0424 major facilitator superfamily MFS_1; major facilitator transporter 3514419..3515660 Delftia acidovorans SPH-1 5748776 YP_001564216.1 CDS Daci_3193 NC_010002.1 3515861 3516958 D PFAM: integrase family protein; KEGG: rso:RSc1655 probable integrase/recombinase protein; integrase family protein 3515861..3516958 Delftia acidovorans SPH-1 5748777 YP_001564217.1 CDS Daci_3194 NC_010002.1 3517136 3517528 R hypothetical protein complement(3517136..3517528) Delftia acidovorans SPH-1 5748778 YP_001564218.1 CDS Daci_3195 NC_010002.1 3517573 3518010 R hypothetical protein complement(3517573..3518010) Delftia acidovorans SPH-1 5748779 YP_001564219.1 CDS Daci_3196 NC_010002.1 3518092 3518331 R hypothetical protein complement(3518092..3518331) Delftia acidovorans SPH-1 5748780 YP_001564220.1 CDS Daci_3197 NC_010002.1 3518752 3519141 R hypothetical protein complement(3518752..3519141) Delftia acidovorans SPH-1 5748781 YP_001564221.1 CDS Daci_3198 NC_010002.1 3519138 3519587 R KEGG: pna:Pnap_4291 hypothetical protein; hypothetical protein complement(3519138..3519587) Delftia acidovorans SPH-1 5748782 YP_001564222.1 CDS Daci_3199 NC_010002.1 3519668 3520021 R hypothetical protein complement(3519668..3520021) Delftia acidovorans SPH-1 5748783 YP_001564223.1 CDS Daci_3200 NC_010002.1 3520023 3520547 R SMART: Pathogenesis-related transcriptional factor and ERF protein; KEGG: nha:Nham_2362 hypothetical protein; pathogenesis-like transcriptional factor and ERF protein complement(3520023..3520547) Delftia acidovorans SPH-1 5748784 YP_001564224.1 CDS Daci_3201 NC_010002.1 3520743 3521243 R PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bvi:Bcep1808_4541 pathogenesis-related transcriptional factor and ERF protein; pathogenesis-like transcriptional factor and ERF protein complement(3520743..3521243) Delftia acidovorans SPH-1 5748785 YP_001564225.1 CDS Daci_3202 NC_010002.1 3521240 3522400 R KEGG: aav:Aave_4134 hypothetical protein; hypothetical protein complement(3521240..3522400) Delftia acidovorans SPH-1 5748786 YP_001564226.1 CDS Daci_3203 NC_010002.1 3522747 3523139 R hypothetical protein complement(3522747..3523139) Delftia acidovorans SPH-1 5748787 YP_001564227.1 CDS Daci_3204 NC_010002.1 3523106 3523885 R KEGG: hiq:CGSHiGG_04990 hypothetical protein; hypothetical protein complement(3523106..3523885) Delftia acidovorans SPH-1 5748788 YP_001564228.1 CDS Daci_3205 NC_010002.1 3523888 3524637 R PFAM: ERF family protein; KEGG: rsq:Rsph17025_1819 ERF family protein; ERF family protein complement(3523888..3524637) Delftia acidovorans SPH-1 5748789 YP_001564229.1 CDS Daci_3206 NC_010002.1 3525090 3525284 R hypothetical protein complement(3525090..3525284) Delftia acidovorans SPH-1 5748790 YP_001564230.1 CDS Daci_3207 NC_010002.1 3525281 3525688 R hypothetical protein complement(3525281..3525688) Delftia acidovorans SPH-1 5748791 YP_001564231.1 CDS Daci_3208 NC_010002.1 3525690 3526067 R hypothetical protein complement(3525690..3526067) Delftia acidovorans SPH-1 5748792 YP_001564232.1 CDS Daci_3209 NC_010002.1 3526386 3526730 R hypothetical protein complement(3526386..3526730) Delftia acidovorans SPH-1 5748793 YP_001564233.1 CDS Daci_3210 NC_010002.1 3526723 3527016 R hypothetical protein complement(3526723..3527016) Delftia acidovorans SPH-1 5748794 YP_001564234.1 CDS Daci_3211 NC_010002.1 3527013 3527411 R hypothetical protein complement(3527013..3527411) Delftia acidovorans SPH-1 5748795 YP_001564235.1 CDS Daci_3212 NC_010002.1 3527638 3527859 R hypothetical protein complement(3527638..3527859) Delftia acidovorans SPH-1 5748796 YP_001564236.1 CDS Daci_3213 NC_010002.1 3527903 3528298 R hypothetical protein complement(3527903..3528298) Delftia acidovorans SPH-1 5748797 YP_001564237.1 CDS Daci_3214 NC_010002.1 3528381 3528722 R hypothetical protein complement(3528381..3528722) Delftia acidovorans SPH-1 5748798 YP_001564238.1 CDS Daci_3215 NC_010002.1 3530748 3531176 R hypothetical protein complement(3530748..3531176) Delftia acidovorans SPH-1 5748799 YP_001564239.1 CDS Daci_3216 NC_010002.1 3531197 3531784 R hypothetical protein complement(3531197..3531784) Delftia acidovorans SPH-1 5748800 YP_001564240.1 CDS Daci_3217 NC_010002.1 3531817 3532527 R PFAM: peptidase S24 and S26 domain protein; KEGG: par:Psyc_0472 possible transcriptional regulator, Cro/CI family; putative phage repressor complement(3531817..3532527) Delftia acidovorans SPH-1 5748801 YP_001564241.1 CDS Daci_3218 NC_010002.1 3534109 3534660 D KEGG: sat:SYN_01843 hypothetical cytosolic protein; hypothetical protein 3534109..3534660 Delftia acidovorans SPH-1 5748802 YP_001564242.1 CDS Daci_3219 NC_010002.1 3534653 3535453 D KEGG: mms:mma_2209 hypothetical protein; hypothetical protein 3534653..3535453 Delftia acidovorans SPH-1 5748803 YP_001564243.1 CDS Daci_3220 NC_010002.1 3535450 3536820 D PFAM: DnaB domain protein helicase domain protein; KEGG: ajs:Ajs_3212 replicative DNA helicase; DnaB domain-containing protein 3535450..3536820 Delftia acidovorans SPH-1 5748804 YP_001564244.1 CDS Daci_3221 NC_010002.1 3536823 3537536 D KEGG: aav:Aave_1690 uncharacterized phage-encoded protein; hypothetical protein 3536823..3537536 Delftia acidovorans SPH-1 5748805 YP_001564245.1 CDS Daci_3222 NC_010002.1 3537533 3538018 D KEGG: bbr:BB1686 hypothetical protein; hypothetical protein 3537533..3538018 Delftia acidovorans SPH-1 5748806 YP_001564246.1 CDS Daci_3223 NC_010002.1 3538317 3538619 D hypothetical protein 3538317..3538619 Delftia acidovorans SPH-1 5748807 YP_001564247.1 CDS Daci_3224 NC_010002.1 3538616 3539086 D hypothetical protein 3538616..3539086 Delftia acidovorans SPH-1 5748808 YP_001564248.1 CDS Daci_3225 NC_010002.1 3539430 3539735 D hypothetical protein 3539430..3539735 Delftia acidovorans SPH-1 5748809 YP_001564249.1 CDS Daci_3226 NC_010002.1 3539728 3540126 D KEGG: aha:AHA_2039 NinB protein; hypothetical protein 3539728..3540126 Delftia acidovorans SPH-1 5748810 YP_001564250.1 CDS Daci_3227 NC_010002.1 3540123 3540641 D KEGG: mms:mma_2189 hypothetical protein; hypothetical protein 3540123..3540641 Delftia acidovorans SPH-1 5748811 YP_001564251.1 CDS Daci_3228 NC_010002.1 3540641 3541138 D KEGG: reu:Reut_B4055 hypothetical protein; hypothetical protein 3540641..3541138 Delftia acidovorans SPH-1 5748812 YP_001564252.1 CDS Daci_3229 NC_010002.1 3541138 3541734 D PFAM: Lambda NinG family protein; KEGG: hit:NTHI1505 hypothetical protein; lambda NinG family protein 3541138..3541734 Delftia acidovorans SPH-1 5748813 YP_001564253.1 CDS Daci_3230 NC_010002.1 3541731 3542174 D hypothetical protein 3541731..3542174 Delftia acidovorans SPH-1 5748814 YP_001564254.1 CDS Daci_3231 NC_010002.1 3542928 3543269 D hypothetical protein 3542928..3543269 Delftia acidovorans SPH-1 5748815 YP_001564255.1 CDS Daci_3232 NC_010002.1 3543480 3543722 D hypothetical protein 3543480..3543722 Delftia acidovorans SPH-1 5748816 YP_001564256.1 CDS Daci_3233 NC_010002.1 3543738 3544115 R KEGG: har:HEAR3047 hypothetical protein; hypothetical protein complement(3543738..3544115) Delftia acidovorans SPH-1 5748817 YP_001564257.1 CDS Daci_3234 NC_010002.1 3544141 3544773 D KEGG: ypk:y2213 hypothetical protein; hypothetical protein 3544141..3544773 Delftia acidovorans SPH-1 5748818 YP_001564258.1 CDS Daci_3235 NC_010002.1 3544804 3545268 D KEGG: cko:CKO_01870 hypothetical protein; hypothetical protein 3544804..3545268 Delftia acidovorans SPH-1 5748819 YP_001564259.1 CDS Daci_3236 NC_010002.1 3545255 3546541 D PFAM: protein of unknown function DUF264; KEGG: bbr:BB3506 putative phage terminase; hypothetical protein 3545255..3546541 Delftia acidovorans SPH-1 5748820 YP_001564260.1 CDS Daci_3237 NC_010002.1 3546561 3547958 D KEGG: cko:CKO_01868 hypothetical protein; hypothetical protein 3546561..3547958 Delftia acidovorans SPH-1 5748821 YP_001564261.1 CDS Daci_3238 NC_010002.1 3547958 3549067 D KEGG: ecv:APECO1_523 hypothetical protein; hypothetical protein 3547958..3549067 Delftia acidovorans SPH-1 5748822 YP_001564262.1 CDS Daci_3239 NC_010002.1 3549077 3549397 D hypothetical protein 3549077..3549397 Delftia acidovorans SPH-1 5748823 YP_001564263.1 CDS Daci_3240 NC_010002.1 3549549 3550283 D KEGG: pap:PSPA7_2407 hypothetical protein; hypothetical protein 3549549..3550283 Delftia acidovorans SPH-1 5748824 YP_001564264.1 CDS Daci_3241 NC_010002.1 3550302 3551270 D KEGG: bbr:BB3501 hypothetical protein; hypothetical protein 3550302..3551270 Delftia acidovorans SPH-1 5748825 YP_001564265.1 CDS Daci_3242 NC_010002.1 3551270 3551569 D KEGG: sit:TM1040_0806 hypothetical protein; hypothetical protein 3551270..3551569 Delftia acidovorans SPH-1 5748826 YP_001564266.1 CDS Daci_3243 NC_010002.1 3551572 3551988 D KEGG: bbr:BB3499 hypothetical protein; hypothetical protein 3551572..3551988 Delftia acidovorans SPH-1 5748827 YP_001564267.1 CDS Daci_3244 NC_010002.1 3552336 3552701 D KEGG: bbr:BB3497 hypothetical protein; hypothetical protein 3552336..3552701 Delftia acidovorans SPH-1 5748828 YP_001564268.1 CDS Daci_3245 NC_010002.1 3552701 3553270 D KEGG: yen:YE2318 hypothetical protein; hypothetical protein 3552701..3553270 Delftia acidovorans SPH-1 5748829 YP_001564269.1 CDS Daci_3246 NC_010002.1 3553267 3553671 D KEGG: smd:Smed_1885 hypothetical protein; hypothetical protein 3553267..3553671 Delftia acidovorans SPH-1 5748830 YP_001564270.1 CDS Daci_3247 NC_010002.1 3553737 3554423 D PFAM: tail protein 3; KEGG: pap:PSPA7_2414 phage tail protein; tail protein 3 3553737..3554423 Delftia acidovorans SPH-1 5748831 YP_001564271.1 CDS Daci_3248 NC_010002.1 3554521 3554967 D KEGG: aav:Aave_1780 hypothetical protein; hypothetical protein 3554521..3554967 Delftia acidovorans SPH-1 5748832 YP_001564272.1 CDS Daci_3249 NC_010002.1 3554964 3555281 D PFAM: Protein of unknown function DUF1799 phage-related; KEGG: aav:Aave_1781 hypothetical protein; hypothetical protein 3554964..3555281 Delftia acidovorans SPH-1 5748833 YP_001564273.1 CDS Daci_3250 NC_010002.1 3555320 3555712 D hypothetical protein 3555320..3555712 Delftia acidovorans SPH-1 5748834 YP_001564274.1 CDS Daci_3251 NC_010002.1 3555669 3556028 R KEGG: bcl:ABC1352 hypothetical protein; hypothetical protein complement(3555669..3556028) Delftia acidovorans SPH-1 5748835 YP_001564275.1 CDS Daci_3252 NC_010002.1 3556248 3556463 R PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein complement(3556248..3556463) Delftia acidovorans SPH-1 5748836 YP_001564276.1 CDS Daci_3253 NC_010002.1 3556710 3557489 D PFAM: KilA domain protein; KEGG: xfa:XF2294 hypothetical protein; KilA domain-containing protein 3556710..3557489 Delftia acidovorans SPH-1 5748837 YP_001564277.1 CDS Daci_3254 NC_010002.1 3557486 3558298 D PFAM: BRO domain protein; KEGG: cgt:cgR_1918 hypothetical protein; prophage antirepressor 3557486..3558298 Delftia acidovorans SPH-1 5748838 YP_001564278.1 CDS Daci_3255 NC_010002.1 3558836 3563503 D PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure; prophage tail length tape measure 3558836..3563503 Delftia acidovorans SPH-1 5748839 YP_001564279.1 CDS Daci_3256 NC_010002.1 3563500 3564417 D KEGG: aav:Aave_1783 carbohydrate-binding family V/XII; carbohydrate-binding family V/XII protein 3563500..3564417 Delftia acidovorans SPH-1 5748840 YP_001564280.1 CDS Daci_3257 NC_010002.1 3564414 3565430 D KEGG: aav:Aave_1784 hypothetical protein; hypothetical protein 3564414..3565430 Delftia acidovorans SPH-1 5748841 YP_001564281.1 CDS Daci_3258 NC_010002.1 3565979 3566212 D KEGG: spu:761802 hypothetical protein LOC761802; hypothetical protein 3565979..3566212 Delftia acidovorans SPH-1 5748842 YP_001564282.1 CDS Daci_3259 NC_010002.1 3566216 3566590 D hypothetical protein 3566216..3566590 Delftia acidovorans SPH-1 5748843 YP_001564283.1 CDS Daci_3260 NC_010002.1 3566654 3567061 D KEGG: mmw:Mmwyl1_0576 hypothetical protein; hypothetical protein 3566654..3567061 Delftia acidovorans SPH-1 5748844 YP_001564284.1 CDS Daci_3261 NC_010002.1 3567058 3567582 D KEGG: bbr:BB1714 phage-related hypothetical protein; hypothetical protein 3567058..3567582 Delftia acidovorans SPH-1 5748845 YP_001564285.1 CDS Daci_3262 NC_010002.1 3567579 3568088 D KEGG: aav:Aave_2360 hypothetical protein; hypothetical protein 3567579..3568088 Delftia acidovorans SPH-1 5748846 YP_001564286.1 CDS Daci_3263 NC_010002.1 3568403 3569410 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(3568403..3569410) Delftia acidovorans SPH-1 5748848 YP_001564287.1 CDS pepN NC_010002.1 3569461 3572187 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: aav:Aave_1844 aminopeptidase N; aminopeptidase N complement(3569461..3572187) Delftia acidovorans SPH-1 5748849 YP_001564288.1 CDS Daci_3265 NC_010002.1 3572265 3573425 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: ajs:Ajs_2758 peptide chain release factor 2; peptide chain release factor 2 complement(3572265..3573425) Delftia acidovorans SPH-1 5748850 YP_001564289.1 CDS Daci_3266 NC_010002.1 3573685 3575637 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0227 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3573685..3575637) Delftia acidovorans SPH-1 5748851 YP_001564290.1 CDS Daci_3267 NC_010002.1 3575792 3578635 R KEGG: yen:YE2278 putative phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3575792..3578635) Delftia acidovorans SPH-1 5748852 YP_001564291.1 CDS Daci_3268 NC_010002.1 3578685 3579176 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3497 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3578685..3579176 Delftia acidovorans SPH-1 5748853 YP_001564292.1 CDS Daci_3269 NC_010002.1 3579173 3580183 D PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor; anti-FecI sigma factor FecR 3579173..3580183 Delftia acidovorans SPH-1 5748854 YP_001564293.1 CDS Daci_3270 NC_010002.1 3580279 3582774 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA; TonB-dependent siderophore receptor 3580279..3582774 Delftia acidovorans SPH-1 5748855 YP_001564294.1 CDS Daci_3271 NC_010002.1 3582894 3583400 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3485 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3582894..3583400 Delftia acidovorans SPH-1 5748856 YP_001564295.1 CDS Daci_3272 NC_010002.1 3583400 3584383 D PFAM: FecR protein; KEGG: mms:mma_3484 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 3583400..3584383 Delftia acidovorans SPH-1 5748857 YP_001564296.1 CDS Daci_3273 NC_010002.1 3584473 3586953 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: xcb:XC_0558 ferric pseudobactin M114 receptor protein; TonB-dependent siderophore receptor 3584473..3586953 Delftia acidovorans SPH-1 5748858 YP_001564297.1 CDS Daci_3274 NC_010002.1 3587059 3587562 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_1040 RNA polymerase sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3587059..3587562 Delftia acidovorans SPH-1 5748859 YP_001564298.1 CDS Daci_3275 NC_010002.1 3587568 3588551 D PFAM: FecR protein; KEGG: mms:mma_3492 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 3587568..3588551 Delftia acidovorans SPH-1 5748860 YP_001564299.1 CDS Daci_3276 NC_010002.1 3588693 3591215 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: azo:azo2994 probable TonB-dependent receptor; TonB-dependent siderophore receptor 3588693..3591215 Delftia acidovorans SPH-1 5748861 YP_001564300.1 CDS Daci_3277 NC_010002.1 3591342 3591599 R hypothetical protein complement(3591342..3591599) Delftia acidovorans SPH-1 5748862 YP_001564301.1 CDS Daci_3278 NC_010002.1 3591603 3591974 R KEGG: rso:RSc1866 hypothetical protein; hypothetical protein complement(3591603..3591974) Delftia acidovorans SPH-1 5748863 YP_001564302.1 CDS Daci_3279 NC_010002.1 3592689 3593024 D KEGG: rsh:Rsph17029_3599 hypothetical protein; hypothetical protein 3592689..3593024 Delftia acidovorans SPH-1 5748864 YP_001564303.1 CDS Daci_3280 NC_010002.1 3593026 3594741 D PFAM: PepSY-associated TM helix domain protein; KEGG: neu:NE1084 hypothetical protein; PepSY-associated TM helix domain-containing protein 3593026..3594741 Delftia acidovorans SPH-1 5748865 YP_001564304.1 CDS Daci_3281 NC_010002.1 3594738 3595115 D KEGG: neu:NE1083 hypothetical protein; hypothetical protein 3594738..3595115 Delftia acidovorans SPH-1 5748866 YP_001564305.1 CDS Daci_3282 NC_010002.1 3595165 3596397 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1082 conserved hypothetical protein; RND family efflux transporter MFP subunit 3595165..3596397 Delftia acidovorans SPH-1 5748867 YP_001564306.1 CDS Daci_3283 NC_010002.1 3596391 3598391 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: neu:NE1081 probable ATP-binding/permease fusion ABC transporter; ABC transporter-like protein 3596391..3598391 Delftia acidovorans SPH-1 5748868 YP_001564307.1 CDS Daci_3284 NC_010002.1 3598393 3599847 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mms:mma_3478 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 3598393..3599847 Delftia acidovorans SPH-1 5748869 YP_001564308.1 CDS Daci_3285 NC_010002.1 3599918 3601192 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_3077 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3599918..3601192) Delftia acidovorans SPH-1 5748870 YP_001564309.1 CDS Daci_3286 NC_010002.1 3601275 3602360 R PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(3601275..3602360) Delftia acidovorans SPH-1 5748871 YP_001564310.1 CDS Daci_3287 NC_010002.1 3602512 3603231 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: aav:Aave_3075 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(3602512..3603231) Delftia acidovorans SPH-1 5748872 YP_001564311.1 CDS Daci_3288 NC_010002.1 3603402 3604895 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase complement(3603402..3604895) Delftia acidovorans SPH-1 5748873 YP_001564312.1 CDS Daci_3289 NC_010002.1 3604948 3607701 D KEGG: aav:Aave_3072 hypothetical protein; hypothetical protein 3604948..3607701 Delftia acidovorans SPH-1 5748874 YP_001564313.1 CDS Daci_3290 NC_010002.1 3607764 3608687 R KEGG: aav:Aave_3071 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(3607764..3608687) Delftia acidovorans SPH-1 5748875 YP_001564314.1 CDS thiG NC_010002.1 3608699 3609541 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(3608699..3609541) Delftia acidovorans SPH-1 5748876 YP_001564315.1 CDS Daci_3292 NC_010002.1 3609541 3609738 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: aav:Aave_3069 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(3609541..3609738) Delftia acidovorans SPH-1 5748877 YP_001564316.1 CDS Daci_3293 NC_010002.1 3609858 3611054 R PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_3068 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3609858..3611054) Delftia acidovorans SPH-1 5748878 YP_001564317.1 CDS Daci_3294 NC_010002.1 3611331 3612212 D KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 3611331..3612212 Delftia acidovorans SPH-1 5748879 YP_001564318.1 CDS Daci_3295 NC_010002.1 3612234 3612710 R PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ajs:Ajs_1788 SH3, type 3 domain protein; hypothetical protein complement(3612234..3612710) Delftia acidovorans SPH-1 5748880 YP_001564319.1 CDS Daci_3296 NC_010002.1 3612912 3613676 D PFAM: Ankyrin; KEGG: pap:PSPA7_2741 hypothetical protein; ankyrin 3612912..3613676 Delftia acidovorans SPH-1 5748881 YP_001564320.1 CDS Daci_3297 NC_010002.1 3613791 3615992 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pae:PA1322 probable TonB-dependent receptor; TonB-dependent siderophore receptor 3613791..3615992 Delftia acidovorans SPH-1 5748882 YP_001564321.1 CDS Daci_3298 NC_010002.1 3616171 3616956 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_1673 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3616171..3616956) Delftia acidovorans SPH-1 5748883 YP_001564322.1 CDS Daci_3299 NC_010002.1 3617038 3617319 R PFAM: BolA family protein; KEGG: ajs:Ajs_1674 BolA family protein; BolA family protein complement(3617038..3617319) Delftia acidovorans SPH-1 5748884 YP_001564323.1 CDS Daci_3300 NC_010002.1 3617316 3617915 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(3617316..3617915) Delftia acidovorans SPH-1 5748885 YP_001564324.1 CDS Daci_3301 NC_010002.1 3618042 3618455 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: ajs:Ajs_1676 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase complement(3618042..3618455) Delftia acidovorans SPH-1 5748886 YP_001564325.1 CDS Daci_3302 NC_010002.1 3618452 3619984 R PFAM: protein of unknown function UPF0061; KEGG: aav:Aave_2947 protein of unknown function UPF0061; hypothetical protein complement(3618452..3619984) Delftia acidovorans SPH-1 5748887 YP_001564326.1 CDS Daci_3303 NC_010002.1 3620054 3621070 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bra:BRADO5131 putative transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(3620054..3621070) Delftia acidovorans SPH-1 5748888 YP_001564327.1 CDS Daci_3304 NC_010002.1 3621261 3622973 D PFAM: Carboxylesterase type B; KEGG: gka:GK3049 thermostable carboxylesterase; carboxylesterase type B 3621261..3622973 Delftia acidovorans SPH-1 5748889 YP_001564328.1 CDS Daci_3305 NC_010002.1 3623052 3624887 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase; X-Pro dipeptidyl-peptidase domain-containing protein 3623052..3624887 Delftia acidovorans SPH-1 5748890 YP_001564329.1 CDS Daci_3306 NC_010002.1 3624999 3626636 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 3624999..3626636 Delftia acidovorans SPH-1 5748891 YP_001564330.1 CDS Daci_3307 NC_010002.1 3626806 3628041 D PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3626806..3628041 Delftia acidovorans SPH-1 5748892 YP_001564331.1 CDS Daci_3308 NC_010002.1 3628283 3629518 D KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3628283..3629518 Delftia acidovorans SPH-1 5748893 YP_001564332.1 CDS Daci_3309 NC_010002.1 3629571 3630524 D PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator; inner-membrane translocator 3629571..3630524 Delftia acidovorans SPH-1 5748894 YP_001564333.1 CDS Daci_3310 NC_010002.1 3630529 3631893 D PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1681 inner-membrane translocator; inner-membrane translocator 3630529..3631893 Delftia acidovorans SPH-1 5748895 YP_001564334.1 CDS Daci_3311 NC_010002.1 3631897 3632724 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1682 ABC transporter related; ABC transporter-like protein 3631897..3632724 Delftia acidovorans SPH-1 5748896 YP_001564335.1 CDS Daci_3312 NC_010002.1 3632735 3633430 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2930 ABC transporter-related protein; ABC transporter-like protein 3632735..3633430 Delftia acidovorans SPH-1 5748897 YP_001564336.1 CDS Daci_3313 NC_010002.1 3633581 3635692 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_1684 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 3633581..3635692 Delftia acidovorans SPH-1 5748898 YP_001564337.1 CDS Daci_3314 NC_010002.1 3635752 3636927 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3635752..3636927 Delftia acidovorans SPH-1 5748899 YP_001564338.1 CDS Daci_3315 NC_010002.1 3636943 3638880 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_1687 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3636943..3638880 Delftia acidovorans SPH-1 5748900 YP_001564339.1 CDS Daci_3316 NC_010002.1 3638950 3639345 R KEGG: aav:Aave_1402 hypothetical protein; hypothetical protein complement(3638950..3639345) Delftia acidovorans SPH-1 5748901 YP_001564340.1 CDS Daci_3317 NC_010002.1 3639568 3640395 R KEGG: aav:Aave_1401 hypothetical protein; hypothetical protein complement(3639568..3640395) Delftia acidovorans SPH-1 5748902 YP_001564341.1 CDS Daci_3318 NC_010002.1 3640950 3641423 R PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_3651 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3640950..3641423) Delftia acidovorans SPH-1 5748903 YP_001564342.1 CDS Daci_3319 NC_010002.1 3641582 3641839 R hypothetical protein complement(3641582..3641839) Delftia acidovorans SPH-1 5748904 YP_001564343.1 CDS Daci_3320 NC_010002.1 3641830 3642528 R KEGG: xac:XAC4135 hypothetical protein; hypothetical protein complement(3641830..3642528) Delftia acidovorans SPH-1 5748905 YP_001564344.1 CDS Daci_3321 NC_010002.1 3642666 3643709 D KEGG: sen:SACE_4995 hypothetical protein; hypothetical protein 3642666..3643709 Delftia acidovorans SPH-1 5748906 YP_001564345.1 CDS Daci_3322 NC_010002.1 3643796 3645871 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; FAD-binding 9 siderophore-interacting domain protein; KEGG: bxe:Bxe_B0926 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding subunit complement(3643796..3645871) Delftia acidovorans SPH-1 5748907 YP_001564346.1 CDS Daci_3323 NC_010002.1 3645918 3646601 R PFAM: Glutathione S-transferase domain; KEGG: rle:RL1425 putative glutathione S-transferase; glutathione S-transferase domain-containing protein complement(3645918..3646601) Delftia acidovorans SPH-1 5748908 YP_001564347.1 CDS Daci_3324 NC_010002.1 3646731 3647630 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0927 transcriptional regulator, LysR family; LysR family transcriptional regulator 3646731..3647630 Delftia acidovorans SPH-1 5748909 YP_001564348.1 CDS Daci_3325 NC_010002.1 3647647 3647892 R KEGG: rso:RS04682 hypothetical protein; hypothetical protein complement(3647647..3647892) Delftia acidovorans SPH-1 5748910 YP_001564349.1 CDS Daci_3326 NC_010002.1 3648022 3649356 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR; anti-FecI sigma factor FecR 3648022..3649356 Delftia acidovorans SPH-1 5748911 YP_001564350.1 CDS Daci_3327 NC_010002.1 3649462 3651876 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reu:Reut_B3686 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3649462..3651876 Delftia acidovorans SPH-1 5748912 YP_001564351.1 CDS Daci_3328 NC_010002.1 3651901 3653442 R PFAM: major facilitator superfamily MFS_1; KEGG: bmv:BMASAVP1_0279 drug resistance transporter, EmrB/QacA family; major facilitator transporter complement(3651901..3653442) Delftia acidovorans SPH-1 5748913 YP_001564352.1 CDS Daci_3329 NC_010002.1 3653542 3654513 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_0141 transcriptional regulator, LysR family; LysR family transcriptional regulator 3653542..3654513 Delftia acidovorans SPH-1 5748914 YP_001564353.1 CDS Daci_3330 NC_010002.1 3654488 3655072 D PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone); flavodoxin/nitric oxide synthase 3654488..3655072 Delftia acidovorans SPH-1 5748915 YP_001564354.1 CDS Daci_3331 NC_010002.1 3655131 3656363 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(3655131..3656363) Delftia acidovorans SPH-1 5748916 YP_001564355.1 CDS Daci_3332 NC_010002.1 3656480 3656941 R hypothetical protein complement(3656480..3656941) Delftia acidovorans SPH-1 5748917 YP_001564356.1 CDS Daci_3333 NC_010002.1 3656945 3657577 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bur:Bcep18194_A3957 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(3656945..3657577) Delftia acidovorans SPH-1 5748918 YP_001564357.1 CDS Daci_3334 NC_010002.1 3657765 3658712 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: reh:H16_A0216 integral membrane protein; hypothetical protein complement(3657765..3658712) Delftia acidovorans SPH-1 5748919 YP_001564358.1 CDS Daci_3335 NC_010002.1 3658843 3659781 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A0215 transcriptional regulator, LysR-family; LysR family transcriptional regulator 3658843..3659781 Delftia acidovorans SPH-1 5748920 YP_001564359.1 CDS Daci_3336 NC_010002.1 3659778 3661343 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1689 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter inner membrane subunit complement(3659778..3661343) Delftia acidovorans SPH-1 5748921 YP_001564360.1 CDS Daci_3337 NC_010002.1 3661334 3662158 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1690 ABC transporter related; ABC transporter-like protein complement(3661334..3662158) Delftia acidovorans SPH-1 5748922 YP_001564361.1 CDS Daci_3338 NC_010002.1 3662178 3663062 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dar:Daro_1826 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(3662178..3663062) Delftia acidovorans SPH-1 5748923 YP_001564362.1 CDS Daci_3339 NC_010002.1 3663227 3664393 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: aav:Aave_1397 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(3663227..3664393) Delftia acidovorans SPH-1 5748924 YP_001564363.1 CDS Daci_3340 NC_010002.1 3664430 3665137 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1396 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3664430..3665137) Delftia acidovorans SPH-1 5748925 YP_001564364.1 CDS Daci_3341 NC_010002.1 3665127 3666104 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_1395 uncharacterized protein UPF0065; hypothetical protein complement(3665127..3666104) Delftia acidovorans SPH-1 5748926 YP_001564365.1 CDS Daci_3342 NC_010002.1 3666227 3667165 R PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_1393 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(3666227..3667165) Delftia acidovorans SPH-1 5748927 YP_001564366.1 CDS Daci_3343 NC_010002.1 3667316 3668311 D PFAM: regulatory protein LysR; KEGG: aav:Aave_1392 transcriptional regulator, LysR family; LysR family transcriptional regulator 3667316..3668311 Delftia acidovorans SPH-1 5748928 YP_001564367.1 CDS Daci_3344 NC_010002.1 3668747 3670429 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: ecx:EcHS_A3815 L-lactate permease; L-lactate permease 3668747..3670429 Delftia acidovorans SPH-1 5748929 YP_001564368.1 CDS Daci_3345 NC_010002.1 3670615 3671421 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3670615..3671421 Delftia acidovorans SPH-1 5748930 YP_001564369.1 CDS lldD NC_010002.1 3671432 3672571 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3671432..3672571 Delftia acidovorans SPH-1 5748931 YP_001564370.1 CDS Daci_3347 NC_010002.1 3672568 3674322 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 3672568..3674322 Delftia acidovorans SPH-1 5748932 YP_001564371.1 CDS Daci_3348 NC_010002.1 3674365 3674487 R KEGG: ajs:Ajs_2957 putative transcriptional regulator; putative transcriptional regulator complement(3674365..3674487) Delftia acidovorans SPH-1 5748933 YP_001564372.1 CDS Daci_3349 NC_010002.1 3674514 3676187 R PFAM: peptidase S41; peptidase S41 complement(3674514..3676187) Delftia acidovorans SPH-1 5748934 YP_001564373.1 CDS Daci_3350 NC_010002.1 3676230 3677738 R PFAM: Aldehyde Dehydrogenase_; KEGG: azo:azo2250 probable succinate semialdehyde dehydrogenase [NAD(P)+]; aldehyde dehydrogenase complement(3676230..3677738) Delftia acidovorans SPH-1 5748935 YP_001564374.1 CDS Daci_3351 NC_010002.1 3677781 3678662 R KEGG: azo:azo2845 conserved hypothetical secreted protein; hypothetical protein complement(3677781..3678662) Delftia acidovorans SPH-1 5748936 YP_001564375.1 CDS Daci_3352 NC_010002.1 3678779 3680902 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_5302 pyrrolo-quinoline quinone; methanol/ethanol family PQQ-dependent dehydrogenase complement(3678779..3680902) Delftia acidovorans SPH-1 5748937 YP_001564376.1 CDS Daci_3353 NC_010002.1 3681045 3683255 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB0832 probable TonB-dependent receptor; TonB-dependent receptor plug complement(3681045..3683255) Delftia acidovorans SPH-1 5748938 YP_001564377.1 CDS Daci_3354 NC_010002.1 3683369 3684547 D PFAM: helix-turn-helix Fis-type; KEGG: mpt:Mpe_A0340 transcriptional activator of acetoin/glycerol metabolism-like protein; Fis family transcriptional regulator 3683369..3684547 Delftia acidovorans SPH-1 5748939 YP_001564378.1 CDS Daci_3355 NC_010002.1 3684558 3685475 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_1175 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3684558..3685475) Delftia acidovorans SPH-1 5748940 YP_001564379.1 CDS Daci_3356 NC_010002.1 3685581 3686906 D PFAM: enolase; KEGG: rme:Rmet_1176 enolase; phosphopyruvate hydratase 3685581..3686906 Delftia acidovorans SPH-1 5748941 YP_001564380.1 CDS Daci_3357 NC_010002.1 3686861 3687820 R KEGG: ajs:Ajs_2094 conserved hypothetical protein 95; hypothetical protein complement(3686861..3687820) Delftia acidovorans SPH-1 5748942 YP_001564381.1 CDS Daci_3358 NC_010002.1 3687997 3688305 R KEGG: aav:Aave_3399 hypothetical protein; hypothetical protein complement(3687997..3688305) Delftia acidovorans SPH-1 5748943 YP_001564382.1 CDS Daci_3359 NC_010002.1 3688476 3689195 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rpd:RPD_4087 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 3688476..3689195 Delftia acidovorans SPH-1 5748944 YP_001564383.1 CDS Daci_3360 NC_010002.1 3689333 3690124 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3689333..3690124 Delftia acidovorans SPH-1 5748945 YP_001564384.1 CDS Daci_3361 NC_010002.1 3690219 3690665 D PFAM: thioesterase superfamily protein; KEGG: vei:Veis_2354 uncharacterized domain 1; thioesterase superfamily protein 3690219..3690665 Delftia acidovorans SPH-1 5748946 YP_001564385.1 CDS Daci_3362 NC_010002.1 3690764 3691783 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: aav:Aave_2871 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3690764..3691783 Delftia acidovorans SPH-1 5748947 YP_001564386.1 CDS Daci_3363 NC_010002.1 3691975 3692880 D probable dehydrogenase; hypothetical protein 3691975..3692880 Delftia acidovorans SPH-1 5748948 YP_001564387.1 CDS Daci_3364 NC_010002.1 3692884 3693606 R PFAM: protein of unknown function DUF1566; KEGG: ajs:Ajs_1701 protein of unknown function DUF1566; hypothetical protein complement(3692884..3693606) Delftia acidovorans SPH-1 5748949 YP_001564388.1 CDS Daci_3365 NC_010002.1 3693752 3695062 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_1867 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3693752..3695062 Delftia acidovorans SPH-1 5748950 YP_001564389.1 CDS Daci_3366 NC_010002.1 3695059 3696483 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily MFS_1; major facilitator transporter 3695059..3696483 Delftia acidovorans SPH-1 5748951 YP_001564390.1 CDS Daci_3367 NC_010002.1 3696575 3698017 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_2836 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3696575..3698017 Delftia acidovorans SPH-1 5748952 YP_001564391.1 CDS Daci_3368 NC_010002.1 3698036 3701233 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_2837 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 family protein 3698036..3701233 Delftia acidovorans SPH-1 5748953 YP_001564392.1 CDS Daci_3369 NC_010002.1 3701230 3702699 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2838 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 3701230..3702699 Delftia acidovorans SPH-1 5748954 YP_001564393.1 CDS Daci_3370 NC_010002.1 3702750 3703079 D KEGG: mpt:Mpe_A3555 hypothetical protein; hypothetical protein 3702750..3703079 Delftia acidovorans SPH-1 5748955 YP_001564394.1 CDS Daci_3371 NC_010002.1 3703064 3704188 R PFAM: protein of unknown function DUF72; KEGG: aav:Aave_1869 protein of unknown function DUF72; hypothetical protein complement(3703064..3704188) Delftia acidovorans SPH-1 5748956 YP_001564395.1 CDS Daci_3372 NC_010002.1 3704474 3705601 D PFAM: regulator of chromosome condensation RCC1; KEGG: mxa:MXAN_0889 RCC1 repeat domain protein; chromosome condensation regulator RCC1 3704474..3705601 Delftia acidovorans SPH-1 5748957 YP_001564396.1 CDS Daci_3373 NC_010002.1 3705625 3707361 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: art:Arth_4421 multicopper oxidase, type 3; multicopper oxidase type 2 3705625..3707361 Delftia acidovorans SPH-1 5748958 YP_001564397.1 CDS Daci_3374 NC_010002.1 3707541 3709901 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ajs:Ajs_1707 RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 3707541..3709901 Delftia acidovorans SPH-1 5748959 YP_001564398.1 CDS Daci_3375 NC_010002.1 3709930 3710769 D PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein; putative signal transduction protein 3709930..3710769 Delftia acidovorans SPH-1 5748960 YP_001564399.1 CDS Daci_3376 NC_010002.1 3710790 3712022 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: ajs:Ajs_1968 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(3710790..3712022) Delftia acidovorans SPH-1 5748961 YP_001564400.1 CDS Daci_3377 NC_010002.1 3712062 3713822 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ajs:Ajs_1969 hypothetical protein; peptidoglycan-binding domain-containing protein complement(3712062..3713822) Delftia acidovorans SPH-1 5748962 YP_001564401.1 CDS Daci_3378 NC_010002.1 3713940 3714362 R KEGG: ajs:Ajs_1970 hypothetical protein; hypothetical protein complement(3713940..3714362) Delftia acidovorans SPH-1 5748963 YP_001564402.1 CDS Daci_3379 NC_010002.1 3714461 3714946 R KEGG: ajs:Ajs_1971 hypothetical protein; hypothetical protein complement(3714461..3714946) Delftia acidovorans SPH-1 5748964 YP_001564403.1 CDS Daci_3380 NC_010002.1 3715604 3716383 D PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3715604..3716383 Delftia acidovorans SPH-1 5748965 YP_001564404.1 CDS Daci_3381 NC_010002.1 3716459 3717376 D PFAM: ATP-binding region ATPase domain protein; KEGG: pol:Bpro_2542 periplasmic sensor signal transduction histidine kinase; putative signal transduction histidine kinase 3716459..3717376 Delftia acidovorans SPH-1 5748966 YP_001564405.1 CDS Daci_3382 NC_010002.1 3717522 3720161 D PFAM: protein of unknown function UPF0118; GAF domain protein; KEGG: ajs:Ajs_1892 putative GAF sensor protein; putative phytochrome sensor protein 3717522..3720161 Delftia acidovorans SPH-1 5748967 YP_001564406.1 CDS Daci_3383 NC_010002.1 3720169 3721305 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(3720169..3721305) Delftia acidovorans SPH-1 5748968 YP_001564407.1 CDS Daci_3384 NC_010002.1 3721597 3722601 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ajs:Ajs_1713 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 3721597..3722601 Delftia acidovorans SPH-1 5748969 YP_001564408.1 CDS Daci_3385 NC_010002.1 3722672 3723535 D PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: ajs:Ajs_1714 thioesterase superfamily protein; N-acetyltransferase GCN5 3722672..3723535 Delftia acidovorans SPH-1 5748970 YP_001564409.1 CDS Daci_3386 NC_010002.1 3723571 3724518 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ complement(3723571..3724518) Delftia acidovorans SPH-1 5748971 YP_001564410.1 CDS Daci_3387 NC_010002.1 3724589 3725578 D PFAM: aminodeoxychorismate lyase; KEGG: vei:Veis_1004 aminodeoxychorismate lyase; aminodeoxychorismate lyase 3724589..3725578 Delftia acidovorans SPH-1 5748972 YP_001564411.1 CDS tmk NC_010002.1 3725636 3726322 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 3725636..3726322 Delftia acidovorans SPH-1 5748973 YP_001564412.1 CDS Daci_3389 NC_010002.1 3726319 3727368 D KEGG: aav:Aave_3411 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3726319..3727368 Delftia acidovorans SPH-1 5748974 YP_001564413.1 CDS Daci_3390 NC_010002.1 3727508 3727867 D PFAM: type IV pilus assembly PilZ; KEGG: aav:Aave_3410 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3727508..3727867 Delftia acidovorans SPH-1 5748975 YP_001564414.1 CDS Daci_3391 NC_010002.1 3727891 3728763 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: aav:Aave_3409 hydrolase, TatD family; TatD family hydrolase 3727891..3728763 Delftia acidovorans SPH-1 5748976 YP_001564415.1 CDS Daci_3392 NC_010002.1 3728754 3729497 D PFAM: Ankyrin; KEGG: aav:Aave_3408 ankyrin; ankyrin 3728754..3729497 Delftia acidovorans SPH-1 5748977 YP_001564416.1 CDS Daci_3393 NC_010002.1 3729543 3731360 R KEGG: aav:Aave_3407 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(3729543..3731360) Delftia acidovorans SPH-1 5748978 YP_001564417.1 CDS tolB NC_010002.1 3731544 3732869 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3731544..3732869 Delftia acidovorans SPH-1 5748979 YP_001564418.1 CDS Daci_3395 NC_010002.1 3732947 3733489 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_1724 TonB box domain protein; peptidoglycan-associated lipoprotein 3732947..3733489 Delftia acidovorans SPH-1 5748980 YP_001564419.1 CDS Daci_3396 NC_010002.1 3733489 3734271 D TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: aav:Aave_3404 tetratricopeptide TPR_2 repeat protein; tol-pal system protein YbgF 3733489..3734271 Delftia acidovorans SPH-1 5748981 YP_001564420.1 CDS Daci_3397 NC_010002.1 3734271 3735098 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 3734271..3735098 Delftia acidovorans SPH-1 5748982 YP_001564421.1 CDS Daci_3398 NC_010002.1 3735342 3735797 R hypothetical protein complement(3735342..3735797) Delftia acidovorans SPH-1 5748984 YP_001564422.1 CDS Daci_3399 NC_010002.1 3735880 3736404 R KEGG: csa:Csal_0002 DNA polymerase III, beta subunit; hypothetical protein complement(3735880..3736404) Delftia acidovorans SPH-1 5748985 YP_001564423.1 CDS Daci_3400 NC_010002.1 3736448 3736729 R hypothetical protein complement(3736448..3736729) Delftia acidovorans SPH-1 5748986 YP_001564424.1 CDS Daci_3401 NC_010002.1 3736938 3737453 R hypothetical protein complement(3736938..3737453) Delftia acidovorans SPH-1 5748987 YP_001564425.1 CDS Daci_3402 NC_010002.1 3737450 3737656 R KEGG: ecp:ECP_4546 hypothetical protein; hypothetical protein complement(3737450..3737656) Delftia acidovorans SPH-1 5748988 YP_001564426.1 CDS Daci_3403 NC_010002.1 3737649 3737930 R hypothetical protein complement(3737649..3737930) Delftia acidovorans SPH-1 5748989 YP_001564427.1 CDS Daci_3404 NC_010002.1 3737924 3738499 R hypothetical protein complement(3737924..3738499) Delftia acidovorans SPH-1 5748990 YP_001564428.1 CDS Daci_3405 NC_010002.1 3738567 3740000 R SMART: DEAD-like helicases; KEGG: xfa:XF0680 hypothetical protein; helicase-like protein complement(3738567..3740000) Delftia acidovorans SPH-1 5748991 YP_001564429.1 CDS Daci_3406 NC_010002.1 3740225 3740614 R hypothetical protein complement(3740225..3740614) Delftia acidovorans SPH-1 5748992 YP_001564430.1 CDS Daci_3407 NC_010002.1 3740628 3740912 R PFAM: VRR-NUC domain protein; KEGG: cbf:CLI_2427 VRR-NUC domain protein; VRR-NUC domain-containing protein complement(3740628..3740912) Delftia acidovorans SPH-1 5748993 YP_001564431.1 CDS Daci_3408 NC_010002.1 3741217 3741783 R KEGG: sec:SC0331 endodeoxyribonuclease; endodeoxyribonuclease complement(3741217..3741783) Delftia acidovorans SPH-1 5748994 YP_001564432.1 CDS Daci_3409 NC_010002.1 3741780 3742001 R hypothetical protein complement(3741780..3742001) Delftia acidovorans SPH-1 5748995 YP_001564433.1 CDS Daci_3410 NC_010002.1 3741998 3742948 R KEGG: hit:NTHI1489 hypothetical protein; hypothetical protein complement(3741998..3742948) Delftia acidovorans SPH-1 5748996 YP_001564434.1 CDS Daci_3411 NC_010002.1 3743035 3745149 R SMART: DNA-directed DNA polymerase; KEGG: xfa:XF0683 phage-related DNA polymerase; DNA-directed DNA polymerase complement(3743035..3745149) Delftia acidovorans SPH-1 5748997 YP_001564435.1 CDS Daci_3412 NC_010002.1 3745146 3745580 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sfr:Sfri_3571 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase complement(3745146..3745580) Delftia acidovorans SPH-1 5748998 YP_001564436.1 CDS rdgC NC_010002.1 3745643 3746578 R Required for efficient pilin antigenic variation; recombination associated protein complement(3745643..3746578) Delftia acidovorans SPH-1 5748999 YP_001564437.1 CDS Daci_3414 NC_010002.1 3746590 3746904 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pna:Pnap_3939 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(3746590..3746904) Delftia acidovorans SPH-1 5749000 YP_001564438.1 CDS Daci_3415 NC_010002.1 3746973 3747659 R KEGG: xft:PD1725 hypothetical protein; hypothetical protein complement(3746973..3747659) Delftia acidovorans SPH-1 5749001 YP_001564439.1 CDS Daci_3416 NC_010002.1 3747721 3749112 R KEGG: xft:PD1724 hypothetical protein; hypothetical protein complement(3747721..3749112) Delftia acidovorans SPH-1 5749002 YP_001564440.1 CDS Daci_3417 NC_010002.1 3749182 3749847 R KEGG: tcr:506269.40 mucin-associated surface protein (MASP) Pfam: Mucin SerH PROSITE: ALA_RICH GLU_RICH; hypothetical protein complement(3749182..3749847) Delftia acidovorans SPH-1 5749003 YP_001564441.1 CDS Daci_3418 NC_010002.1 3750020 3750214 D hypothetical protein 3750020..3750214 Delftia acidovorans SPH-1 5749004 YP_001564442.1 CDS Daci_3419 NC_010002.1 3750207 3750518 D hypothetical protein 3750207..3750518 Delftia acidovorans SPH-1 5749005 YP_001564443.1 CDS Daci_3420 NC_010002.1 3750520 3750789 D hypothetical protein 3750520..3750789 Delftia acidovorans SPH-1 5749006 YP_001564444.1 CDS Daci_3421 NC_010002.1 3750786 3751112 D hypothetical protein 3750786..3751112 Delftia acidovorans SPH-1 5749007 YP_001564445.1 CDS Daci_3422 NC_010002.1 3751109 3751444 D hypothetical protein 3751109..3751444 Delftia acidovorans SPH-1 5749008 YP_001564446.1 CDS Daci_3423 NC_010002.1 3751659 3752096 R hypothetical protein complement(3751659..3752096) Delftia acidovorans SPH-1 5749009 YP_001564447.1 CDS Daci_3424 NC_010002.1 3752222 3752536 D hypothetical protein 3752222..3752536 Delftia acidovorans SPH-1 5749010 YP_001564448.1 CDS Daci_3425 NC_010002.1 3752671 3752988 D hypothetical protein 3752671..3752988 Delftia acidovorans SPH-1 5749011 YP_001564449.1 CDS Daci_3426 NC_010002.1 3753413 3755986 D TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4 ; Primase 2; KEGG: bcl:ABC1368 hypothetical protein; P4 family phage/plasmid primase 3753413..3755986 Delftia acidovorans SPH-1 5749012 YP_001564450.1 CDS Daci_3427 NC_010002.1 3755997 3756611 D hypothetical protein 3755997..3756611 Delftia acidovorans SPH-1 5749013 YP_001564451.1 CDS Daci_3428 NC_010002.1 3758740 3759309 R hypothetical protein complement(3758740..3759309) Delftia acidovorans SPH-1 5749014 YP_001564452.1 CDS Daci_3429 NC_010002.1 3760491 3760976 D hypothetical protein 3760491..3760976 Delftia acidovorans SPH-1 5749015 YP_001564453.1 CDS Daci_3430 NC_010002.1 3760973 3763219 D PFAM: terminase GpA; KEGG: stm:STM1031 hypothetical protein; terminase GpA 3760973..3763219 Delftia acidovorans SPH-1 5749016 YP_001564454.1 CDS Daci_3431 NC_010002.1 3763674 3763916 D hypothetical protein 3763674..3763916 Delftia acidovorans SPH-1 5749017 YP_001564455.1 CDS Daci_3432 NC_010002.1 3763916 3765682 D TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: eba:ebA7269 phage portal protein, lambda family; lambda family phage portal protein 3763916..3765682 Delftia acidovorans SPH-1 5749018 YP_001564456.1 CDS Daci_3433 NC_010002.1 3765933 3766424 D KEGG: aav:Aave_1723 hypothetical protein; hypothetical protein 3765933..3766424 Delftia acidovorans SPH-1 5749019 YP_001564457.1 CDS Daci_3434 NC_010002.1 3766434 3766940 D KEGG: pmy:Pmen_3954 hypothetical protein; hypothetical protein 3766434..3766940 Delftia acidovorans SPH-1 5749020 YP_001564458.1 CDS Daci_3435 NC_010002.1 3767612 3767980 D hypothetical protein 3767612..3767980 Delftia acidovorans SPH-1 5749021 YP_001564459.1 CDS Daci_3436 NC_010002.1 3768479 3768760 D hypothetical protein 3768479..3768760 Delftia acidovorans SPH-1 5749022 YP_001564460.1 CDS Daci_3437 NC_010002.1 3768837 3769874 D PFAM: peptidase S14 ClpP; KEGG: sbm:Shew185_0756 peptidase S14 ClpP; peptidase S14 ClpP 3768837..3769874 Delftia acidovorans SPH-1 5749023 YP_001564461.1 CDS Daci_3438 NC_010002.1 3769877 3770521 D KEGG: rsp:RSP_2757 hypothetical protein; hypothetical protein 3769877..3770521 Delftia acidovorans SPH-1 5749024 YP_001564462.1 CDS Daci_3439 NC_010002.1 3770554 3771579 D KEGG: tcx:Tcr_0682 hypothetical protein; hypothetical protein 3770554..3771579 Delftia acidovorans SPH-1 5749025 YP_001564463.1 CDS Daci_3440 NC_010002.1 3771591 3771899 D hypothetical protein 3771591..3771899 Delftia acidovorans SPH-1 5749026 YP_001564464.1 CDS Daci_3441 NC_010002.1 3771899 3772540 D hypothetical protein 3771899..3772540 Delftia acidovorans SPH-1 5749027 YP_001564465.1 CDS Daci_3442 NC_010002.1 3772537 3773025 D hypothetical protein 3772537..3773025 Delftia acidovorans SPH-1 5749028 YP_001564466.1 CDS Daci_3443 NC_010002.1 3773125 3773880 D KEGG: son:SO_0679 hypothetical protein; hypothetical protein 3773125..3773880 Delftia acidovorans SPH-1 5749029 YP_001564467.1 CDS Daci_3444 NC_010002.1 3775330 3778044 D TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein; phage tape measure protein 3775330..3778044 Delftia acidovorans SPH-1 5749030 YP_001564468.1 CDS Daci_3445 NC_010002.1 3778041 3778433 D KEGG: rso:RSc0874 probable transmembrane protein; putative transmembrane protein 3778041..3778433 Delftia acidovorans SPH-1 5749031 YP_001564469.1 CDS Daci_3448 NC_010002.1 3782231 3783406 D KEGG: aav:Aave_4096 hypothetical protein; hypothetical protein 3782231..3783406 Delftia acidovorans SPH-1 5749033 YP_001564470.1 CDS Daci_3449 NC_010002.1 3783406 3784881 D KEGG: aav:Aave_4095 hypothetical protein; hypothetical protein 3783406..3784881 Delftia acidovorans SPH-1 5749034 YP_001564471.1 CDS Daci_3450 NC_010002.1 3784878 3785309 D KEGG: aav:Aave_4094 hypothetical protein; hypothetical protein 3784878..3785309 Delftia acidovorans SPH-1 5749035 YP_001564472.1 CDS Daci_3451 NC_010002.1 3785313 3787205 D KEGG: aav:Aave_4093 hypothetical protein; hypothetical protein 3785313..3787205 Delftia acidovorans SPH-1 5749036 YP_001564473.1 CDS Daci_3452 NC_010002.1 3787407 3787958 D KEGG: eba:ebA7267 putative lysozyme; putative lysozyme 3787407..3787958 Delftia acidovorans SPH-1 5749037 YP_001564474.1 CDS Daci_3453 NC_010002.1 3787955 3788491 D hypothetical protein 3787955..3788491 Delftia acidovorans SPH-1 5749038 YP_001564475.1 CDS Daci_3454 NC_010002.1 3788476 3788769 R hypothetical protein complement(3788476..3788769) Delftia acidovorans SPH-1 5749039 YP_001564476.1 CDS Daci_3455 NC_010002.1 3788766 3789065 R hypothetical protein complement(3788766..3789065) Delftia acidovorans SPH-1 5749040 YP_001564477.1 CDS Daci_3456 NC_010002.1 3789067 3789297 R hypothetical protein complement(3789067..3789297) Delftia acidovorans SPH-1 5749041 YP_001564478.1 CDS Daci_3457 NC_010002.1 3789329 3790138 R hypothetical protein complement(3789329..3790138) Delftia acidovorans SPH-1 5749042 YP_001564479.1 CDS Daci_3458 NC_010002.1 3790138 3790338 R hypothetical protein complement(3790138..3790338) Delftia acidovorans SPH-1 5749043 YP_001564480.1 CDS Daci_3459 NC_010002.1 3790335 3791381 R KEGG: pic:PICST_31634 repressed by TUP1 protein 1; hypothetical protein complement(3790335..3791381) Delftia acidovorans SPH-1 5749044 YP_001564481.1 CDS Daci_3460 NC_010002.1 3791378 3791590 R KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein complement(3791378..3791590) Delftia acidovorans SPH-1 5749045 YP_001564482.1 CDS Daci_3461 NC_010002.1 3791686 3792993 R PFAM: integrase family protein; KEGG: ajs:Ajs_3340 phage integrase family protein; integrase family protein complement(3791686..3792993) Delftia acidovorans SPH-1 5749046 YP_001564483.1 CDS Daci_3462 NC_010002.1 3793606 3794298 R hypothetical protein complement(3793606..3794298) Delftia acidovorans SPH-1 5749047 YP_001564484.1 CDS Daci_3463 NC_010002.1 3795600 3795905 D hypothetical protein 3795600..3795905 Delftia acidovorans SPH-1 5749048 YP_001564485.1 CDS Daci_3464 NC_010002.1 3795912 3796403 D KEGG: bbr:BB0749 putative lipoprotein; hypothetical protein 3795912..3796403 Delftia acidovorans SPH-1 5749049 YP_001564486.1 CDS Daci_3465 NC_010002.1 3796507 3796929 D KEGG: bte:BTH_II1046 ClpP protease; hypothetical protein 3796507..3796929 Delftia acidovorans SPH-1 5749050 YP_001564487.1 CDS Daci_3466 NC_010002.1 3797495 3798592 R KEGG: mmu:100041170 similar to loricrin; hypothetical protein complement(3797495..3798592) Delftia acidovorans SPH-1 5749051 YP_001564488.1 CDS Daci_3467 NC_010002.1 3798971 3800101 R PFAM: Choloylglycine hydrolase; KEGG: bvi:Bcep1808_5029 choloylglycine hydrolase; choloylglycine hydrolase complement(3798971..3800101) Delftia acidovorans SPH-1 5749052 YP_001564489.1 CDS Daci_3468 NC_010002.1 3800296 3800499 R hypothetical protein complement(3800296..3800499) Delftia acidovorans SPH-1 5749053 YP_001564490.1 CDS Daci_3469 NC_010002.1 3800771 3801247 D PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO5978 putative histone acetyltransferase (HAT); N-acetyltransferase GCN5 3800771..3801247 Delftia acidovorans SPH-1 5749054 YP_001564491.1 CDS Daci_3470 NC_010002.1 3801293 3802690 D PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ajs:Ajs_0352 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 3801293..3802690 Delftia acidovorans SPH-1 5749055 YP_001564492.1 CDS Daci_3471 NC_010002.1 3802715 3803107 R hypothetical protein complement(3802715..3803107) Delftia acidovorans SPH-1 5749056 YP_001564493.1 CDS Daci_3472 NC_010002.1 3803218 3803691 D PFAM: Arc domain protein DNA binding domain protein; KEGG: bvi:Bcep1808_4550 Arc domain protein DNA binding domain protein; Arc domain-containing protein 3803218..3803691 Delftia acidovorans SPH-1 5749057 YP_001564494.1 CDS Daci_3473 NC_010002.1 3803823 3804002 D PFAM: CsbD family protein; KEGG: pna:Pnap_3279 CsbD family protein; CsbD family protein 3803823..3804002 Delftia acidovorans SPH-1 5749058 YP_001564495.1 CDS Daci_3474 NC_010002.1 3804112 3805293 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_A0406 hypothetical protein with GGDEF domain; diguanylate cyclase complement(3804112..3805293) Delftia acidovorans SPH-1 5749059 YP_001564496.1 CDS Daci_3475 NC_010002.1 3805634 3807196 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3805634..3807196 Delftia acidovorans SPH-1 5749060 YP_001564497.1 CDS Daci_3476 NC_010002.1 3807683 3807976 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(3807683..3807976) Delftia acidovorans SPH-1 5749061 YP_001564498.1 CDS Daci_3477 NC_010002.1 3808777 3810597 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 3808777..3810597 Delftia acidovorans SPH-1 5749062 YP_001564499.1 CDS Daci_3478 NC_010002.1 3810630 3812120 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spe:Spro_1181 diguanylate cyclase; diguanylate cyclase complement(3810630..3812120) Delftia acidovorans SPH-1 5749063 YP_001564500.1 CDS Daci_3479 NC_010002.1 3812783 3813262 D PFAM: regulatory protein AsnC/Lrp family; KEGG: vei:Veis_0270 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3812783..3813262 Delftia acidovorans SPH-1 5749064 YP_001564501.1 CDS Daci_3480 NC_010002.1 3813419 3815869 D PFAM: peptidase S45 penicillin amidase; KEGG: aav:Aave_1140 peptidase S45, penicillin amidase; peptidase S45 penicillin amidase 3813419..3815869 Delftia acidovorans SPH-1 5749065 YP_001564502.1 CDS Daci_3481 NC_010002.1 3815976 3817991 R TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_B2555 selenide water dikinase; selenide, water dikinase complement(3815976..3817991) Delftia acidovorans SPH-1 5749066 YP_001564503.1 CDS Daci_3482 NC_010002.1 3818048 3818710 D KEGG: ppu:PP_4671 hypothetical protein; hypothetical protein 3818048..3818710 Delftia acidovorans SPH-1 5749067 YP_001564504.1 CDS Daci_3483 NC_010002.1 3818707 3819936 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pau:PA14_49890 hypothetical protein; diguanylate cyclase 3818707..3819936 Delftia acidovorans SPH-1 5749068 YP_001564505.1 CDS Daci_3484 NC_010002.1 3819938 3820444 D PFAM: OmpA/MotB domain protein; KEGG: reh:H16_A2519 outer membrane protein and related peptidoglycan-associated proteins; OmpA/MotB domain-containing protein 3819938..3820444 Delftia acidovorans SPH-1 5749069 YP_001564506.1 CDS Daci_3485 NC_010002.1 3820762 3822693 R TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: bxe:Bxe_B2548 translation elongation factor, selenocysteine-specific; selenocysteine-specific translation elongation factor complement(3820762..3822693) Delftia acidovorans SPH-1 5749070 YP_001564507.1 CDS Daci_3486 NC_010002.1 3822704 3824158 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3822704..3824158) Delftia acidovorans SPH-1 5749071 YP_001564508.1 CDS Daci_3487 NC_010002.1 3824173 3825147 R TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: bch:Bcen2424_3987 formate dehydrogenase accessory protein FdhE; formate dehydrogenase accessory protein FdhE complement(3824173..3825147) Delftia acidovorans SPH-1 5749072 YP_001564509.1 CDS Daci_3488 NC_010002.1 3825360 3825986 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: dar:Daro_1816 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(3825360..3825986) Delftia acidovorans SPH-1 5749073 YP_001564510.1 CDS Daci_3489 NC_010002.1 3825983 3826912 R TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: bam:Bamb_3378 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta complement(3825983..3826912) Delftia acidovorans SPH-1 5749074 YP_001564511.1 CDS Daci_3490 NC_010002.1 3826923 3829349 R KEGG: bam:Bamb_3377 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha complement(3826923..3829349) Delftia acidovorans SPH-1 5749075 YP_001564512.1 CDS Daci_3491 NC_010002.1 3829398 3829988 R PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: bxe:Bxe_B2554 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region complement(3829398..3829988) Delftia acidovorans SPH-1 5749076 YP_001564513.1 CDS Daci_3492 NC_010002.1 3830346 3831509 R PFAM: protein of unknown function UPF0118; KEGG: ajs:Ajs_1821 protein of unknown function UPF0118; hypothetical protein complement(3830346..3831509) Delftia acidovorans SPH-1 5749077 YP_001564514.1 CDS sucA NC_010002.1 3831741 3834620 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 3831741..3834620 Delftia acidovorans SPH-1 5749078 YP_001564515.1 CDS Daci_3494 NC_010002.1 3834675 3835940 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ajs:Ajs_1823 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 3834675..3835940 Delftia acidovorans SPH-1 5749079 YP_001564516.1 CDS Daci_3495 NC_010002.1 3836004 3837458 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3836004..3837458 Delftia acidovorans SPH-1 5749080 YP_001564517.1 CDS Daci_3496 NC_010002.1 3837556 3838659 D PFAM: AFG1-family ATPase; KEGG: ajs:Ajs_1825 AFG1-family ATPase; AFG1 family ATPase 3837556..3838659 Delftia acidovorans SPH-1 5749081 YP_001564518.1 CDS Daci_3497 NC_010002.1 3838700 3839428 D KEGG: aav:Aave_3244 hypothetical protein; hypothetical protein 3838700..3839428 Delftia acidovorans SPH-1 5749082 YP_001564519.1 CDS Daci_3498 NC_010002.1 3839438 3840208 R SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_1827 protein phosphatase 2C domain protein; protein serine/threonine phosphatase complement(3839438..3840208) Delftia acidovorans SPH-1 5749083 YP_001564520.1 CDS Daci_3499 NC_010002.1 3840345 3842519 D SMART: helicase c2; DEAD-like helicases; KEGG: pol:Bpro_2617 helicase C2; helicase c2 3840345..3842519 Delftia acidovorans SPH-1 5749084 YP_001564521.1 CDS Daci_3500 NC_010002.1 3842482 3843273 R KEGG: ajs:Ajs_1829 putative transmembrane protein; putative transmembrane protein complement(3842482..3843273) Delftia acidovorans SPH-1 5749085 YP_001564522.1 CDS Daci_3501 NC_010002.1 3843435 3847019 D KEGG: ajs:Ajs_1830 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 3843435..3847019 Delftia acidovorans SPH-1 5749086 YP_001564523.1 CDS clpS NC_010002.1 3847153 3847530 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 3847153..3847530 Delftia acidovorans SPH-1 5749087 YP_001564524.1 CDS Daci_3503 NC_010002.1 3847594 3849930 D KEGG: ajs:Ajs_1832 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 3847594..3849930 Delftia acidovorans SPH-1 5749088 YP_001564525.1 CDS Daci_3504 NC_010002.1 3850014 3851468 D PFAM: phospholipase D/Transphosphatidylase; KEGG: xac:XAC0014 cardiolipin synthetase; phospholipase D/transphosphatidylase 3850014..3851468 Delftia acidovorans SPH-1 5749089 YP_001564526.1 CDS sbcB NC_010002.1 3851506 3852945 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 3851506..3852945 Delftia acidovorans SPH-1 5749090 YP_001564527.1 CDS Daci_3506 NC_010002.1 3853088 3854317 R PFAM: nucleoside recognition domain protein; KEGG: pfl:PFL_0096 nucleoside transporter; nucleoside recognition domain-containing protein complement(3853088..3854317) Delftia acidovorans SPH-1 5749091 YP_001564528.1 CDS Daci_3507 NC_010002.1 3854466 3854861 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3737 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3854466..3854861 Delftia acidovorans SPH-1 5749092 YP_001564529.1 CDS Daci_3508 NC_010002.1 3854881 3855654 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: reu:Reut_A3459 trans-aconitate 2-methyltransferase; trans-aconitate 2-methyltransferase complement(3854881..3855654) Delftia acidovorans SPH-1 5749093 YP_001564530.1 CDS Daci_3509 NC_010002.1 3855711 3856670 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2326 transcriptional regulator, LysR family; LysR family transcriptional regulator 3855711..3856670 Delftia acidovorans SPH-1 5749094 YP_001564531.1 CDS Daci_3510 NC_010002.1 3856680 3857597 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3047 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3856680..3857597) Delftia acidovorans SPH-1 5749095 YP_001564532.1 CDS Daci_3511 NC_010002.1 3857664 3858542 D PFAM: HpcH/HpaI aldolase; KEGG: vei:Veis_3048 citryl-CoA lyase; citrate (pro-3S)-lyase 3857664..3858542 Delftia acidovorans SPH-1 5749096 YP_001564533.1 CDS Daci_3512 NC_010002.1 3858624 3859628 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_3049 uncharacterized protein UPF0065; hypothetical protein 3858624..3859628 Delftia acidovorans SPH-1 5749097 YP_001564534.1 CDS Daci_3513 NC_010002.1 3859687 3860850 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_3050 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3859687..3860850 Delftia acidovorans SPH-1 5749098 YP_001564535.1 CDS Daci_3514 NC_010002.1 3860850 3861671 D PFAM: amidohydrolase 2; KEGG: bja:blr2281 putative 2-pyrone-4,6-dicarbaxylate hydrolase; amidohydrolase 2 3860850..3861671 Delftia acidovorans SPH-1 5749099 YP_001564536.1 CDS Daci_3515 NC_010002.1 3861735 3862727 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3798 hypothetical protein; hypothetical protein 3861735..3862727 Delftia acidovorans SPH-1 5749100 YP_001564537.1 CDS Daci_3516 NC_010002.1 3862748 3862978 R KEGG: aav:Aave_2829 glucose sorbosone dehydrogenase; hypothetical protein complement(3862748..3862978) Delftia acidovorans SPH-1 5749101 YP_001564538.1 CDS Daci_3517 NC_010002.1 3863152 3863853 D PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_2928 protein of unknown function DUF28; hypothetical protein 3863152..3863853 Delftia acidovorans SPH-1 5749102 YP_001564539.1 CDS upp NC_010002.1 3863925 3864554 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3863925..3864554) Delftia acidovorans SPH-1 5749103 YP_001564540.1 CDS Daci_3519 NC_010002.1 3864611 3865630 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3217 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(3864611..3865630) Delftia acidovorans SPH-1 5749104 YP_001564541.1 CDS Daci_3520 NC_010002.1 3865736 3867262 R PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: aav:Aave_3204 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(3865736..3867262) Delftia acidovorans SPH-1 5749105 YP_001564542.1 CDS Daci_3521 NC_010002.1 3867341 3868060 D PFAM: protein of unknown function DUF28; KEGG: ajs:Ajs_1898 protein of unknown function DUF28; hypothetical protein 3867341..3868060 Delftia acidovorans SPH-1 5749106 YP_001564543.1 CDS Daci_3522 NC_010002.1 3868057 3869340 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3868057..3869340 Delftia acidovorans SPH-1 5749107 YP_001564544.1 CDS Daci_3523 NC_010002.1 3869345 3870409 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 3869345..3870409 Delftia acidovorans SPH-1 5749108 YP_001564545.1 CDS Daci_3524 NC_010002.1 3870659 3871444 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: aav:Aave_3200 iojap-like protein; iojap family protein 3870659..3871444 Delftia acidovorans SPH-1 5749109 YP_001564546.1 CDS Daci_3525 NC_010002.1 3871466 3871933 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3871466..3871933 Delftia acidovorans SPH-1 5749110 YP_001564547.1 CDS Daci_3526 NC_010002.1 3872061 3872675 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ajs:Ajs_1903 maf protein; maf protein 3872061..3872675 Delftia acidovorans SPH-1 5749111 YP_001564548.1 CDS Daci_3527 NC_010002.1 3872777 3874324 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: aav:Aave_3196 ribonuclease, Rne/Rng family; ribonuclease 3872777..3874324 Delftia acidovorans SPH-1 5749112 YP_001564549.1 CDS Daci_3528 NC_010002.1 3874504 3876405 D KEGG: hch:HCH_03141 hypothetical protein; hypothetical protein 3874504..3876405 Delftia acidovorans SPH-1 5749113 YP_001564550.1 CDS Daci_3529 NC_010002.1 3876415 3877644 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ccr:CC_0555 hypothetical protein; monooxygenase FAD-binding 3876415..3877644 Delftia acidovorans SPH-1 5749114 YP_001564551.1 CDS Daci_3530 NC_010002.1 3877580 3878575 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065; hypothetical protein complement(3877580..3878575) Delftia acidovorans SPH-1 5749115 YP_001564552.1 CDS Daci_3531 NC_010002.1 3878976 3881198 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor; TonB-dependent siderophore receptor complement(3878976..3881198) Delftia acidovorans SPH-1 5749116 YP_001564553.1 CDS Daci_3532 NC_010002.1 3881273 3882235 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator; AraC family transcriptional regulator complement(3881273..3882235) Delftia acidovorans SPH-1 5749117 YP_001564554.1 CDS Daci_3533 NC_010002.1 3882362 3884056 R PFAM: Tannase and feruloyl esterase; KEGG: bra:BRADO4865 putative feruloyl esterase; feruloyl esterase complement(3882362..3884056) Delftia acidovorans SPH-1 5749118 YP_001564555.1 CDS Daci_3534 NC_010002.1 3884162 3885328 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(3884162..3885328) Delftia acidovorans SPH-1 5749119 YP_001564556.1 CDS Daci_3535 NC_010002.1 3885387 3886367 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3166 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein complement(3885387..3886367) Delftia acidovorans SPH-1 5749120 YP_001564557.1 CDS Daci_3536 NC_010002.1 3886393 3886806 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: aav:Aave_3165 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(3886393..3886806) Delftia acidovorans SPH-1 5749121 YP_001564558.1 CDS Daci_3537 NC_010002.1 3886817 3887926 R PFAM: permease YjgP/YjgQ family protein; KEGG: aav:Aave_3164 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(3886817..3887926) Delftia acidovorans SPH-1 5749122 YP_001564559.1 CDS Daci_3538 NC_010002.1 3887926 3889053 R PFAM: permease YjgP/YjgQ family protein; KEGG: aav:Aave_3163 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(3887926..3889053) Delftia acidovorans SPH-1 5749123 YP_001564560.1 CDS Daci_3539 NC_010002.1 3889077 3890654 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: aav:Aave_3162 leucyl aminopeptidase; leucyl aminopeptidase 3889077..3890654 Delftia acidovorans SPH-1 5749124 YP_001564561.1 CDS Daci_3540 NC_010002.1 3890700 3891131 D PFAM: DNA polymerase III chi subunit HolC; KEGG: aav:Aave_3161 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC 3890700..3891131 Delftia acidovorans SPH-1 5749125 YP_001564562.1 CDS Daci_3541 NC_010002.1 3891997 3893031 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(3891997..3893031) Delftia acidovorans SPH-1 5749126 YP_001564563.1 CDS Daci_3544 NC_010002.1 3894463 3894708 R PFAM: Prophage CP4-57 regulatory; KEGG: azo:azo2049 hypothetical protein; phage transcriptional regulator AlpA complement(3894463..3894708) Delftia acidovorans SPH-1 5749128 YP_001564564.1 CDS Daci_3545 NC_010002.1 3894863 3895180 R KEGG: bbr:BB1668 modification methylase; hypothetical protein complement(3894863..3895180) Delftia acidovorans SPH-1 5749129 YP_001564565.1 CDS Daci_3546 NC_010002.1 3895545 3895901 D KEGG: bur:Bcep18194_B0821 hypothetical protein; hypothetical protein 3895545..3895901 Delftia acidovorans SPH-1 5749130 YP_001564566.1 CDS Daci_3547 NC_010002.1 3896468 3896896 R hypothetical protein complement(3896468..3896896) Delftia acidovorans SPH-1 5749131 YP_001564567.1 CDS Daci_3548 NC_010002.1 3897095 3897391 D KEGG: ret:RHE_PD00236 putative integrase protein; hypothetical protein 3897095..3897391 Delftia acidovorans SPH-1 5749132 YP_001564568.1 CDS Daci_3549 NC_010002.1 3897432 3898082 D PFAM: Integrase catalytic region; KEGG: rru:Rru_A1128 integrase, catalytic region; integrase catalytic subunit 3897432..3898082 Delftia acidovorans SPH-1 5749133 YP_001564569.1 CDS Daci_3550 NC_010002.1 3898000 3899040 R PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: ter:Tery_2076 protein of unknown function DUF900, hydrolase-like; hypothetical protein complement(3898000..3899040) Delftia acidovorans SPH-1 5749134 YP_001564570.1 CDS Daci_3551 NC_010002.1 3899465 3900193 D KEGG: spu:578470 similar to SEC24 related gene family, member C (S. cerevisiae); hypothetical protein 3899465..3900193 Delftia acidovorans SPH-1 5749135 YP_001564571.1 CDS Daci_3552 NC_010002.1 3900287 3900685 R KEGG: rme:Rmet_0836 hypothetical protein; hypothetical protein complement(3900287..3900685) Delftia acidovorans SPH-1 5749136 YP_001564572.1 CDS Daci_3553 NC_010002.1 3900848 3901150 R KEGG: ccv:CCV52592_1309 hypothetical protein; hypothetical protein complement(3900848..3901150) Delftia acidovorans SPH-1 5749137 YP_001564573.1 CDS Daci_3554 NC_010002.1 3901560 3901826 D hypothetical protein 3901560..3901826 Delftia acidovorans SPH-1 5749138 YP_001564574.1 CDS Daci_3555 NC_010002.1 3903616 3903987 D hypothetical protein 3903616..3903987 Delftia acidovorans SPH-1 5749139 YP_001564575.1 CDS Daci_3556 NC_010002.1 3903987 3905192 D KEGG: bbr:BB2240 putative phage lysozyme; Phage-like lysozyme (muraminidase)-like protein 3903987..3905192 Delftia acidovorans SPH-1 5749140 YP_001564576.1 CDS Daci_3557 NC_010002.1 3905404 3905730 D KEGG: aav:Aave_2360 hypothetical protein; hypothetical protein 3905404..3905730 Delftia acidovorans SPH-1 5749141 YP_001564577.1 CDS Daci_3558 NC_010002.1 3906788 3907597 R KEGG: aav:Aave_1931 hypothetical protein; hypothetical protein complement(3906788..3907597) Delftia acidovorans SPH-1 5749142 YP_001564578.1 CDS Daci_3559 NC_010002.1 3907954 3908484 R KEGG: xac:XAC2267 hypothetical protein; hypothetical protein complement(3907954..3908484) Delftia acidovorans SPH-1 5749143 YP_001564579.1 CDS Daci_3560 NC_010002.1 3909053 3909439 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: nha:Nham_3430 CrcB protein; CrcB protein 3909053..3909439 Delftia acidovorans SPH-1 5749144 YP_001564580.1 CDS Daci_3561 NC_010002.1 3909618 3910175 D KEGG: bra:BRADO5230 hypothetical protein; hypothetical protein 3909618..3910175 Delftia acidovorans SPH-1 5749145 YP_001564581.1 CDS Daci_3562 NC_010002.1 3910223 3911194 R PFAM: FecR protein; KEGG: pfl:PFL_2292 sigma factor regulatory protein FecR; anti-FecI sigma factor FecR complement(3910223..3911194) Delftia acidovorans SPH-1 5749146 YP_001564582.1 CDS Daci_3563 NC_010002.1 3911199 3911747 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 factor complement(3911199..3911747) Delftia acidovorans SPH-1 5749147 YP_001564583.1 CDS Daci_3564 NC_010002.1 3911929 3912351 R hypothetical protein complement(3911929..3912351) Delftia acidovorans SPH-1 5749148 YP_001564584.1 CDS Daci_3565 NC_010002.1 3912514 3913188 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(3912514..3913188) Delftia acidovorans SPH-1 5749149 YP_001564585.1 CDS Daci_3566 NC_010002.1 3913302 3914258 D PFAM: Asparaginase/glutaminase; KEGG: aav:Aave_2559 asparaginase/glutaminase; asparaginase 3913302..3914258 Delftia acidovorans SPH-1 5749150 YP_001564586.1 CDS adk NC_010002.1 3914350 3915006 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3914350..3915006) Delftia acidovorans SPH-1 5749151 YP_001564587.1 CDS Daci_3568 NC_010002.1 3915271 3916068 R KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(3915271..3916068) Delftia acidovorans SPH-1 5749152 YP_001564588.1 CDS Daci_3569 NC_010002.1 3916137 3916319 R PFAM: protein of unknown function DUF343; KEGG: ajs:Ajs_2306 protein of unknown function DUF343; hypothetical protein complement(3916137..3916319) Delftia acidovorans SPH-1 5749153 YP_001564589.1 CDS lpxK NC_010002.1 3916384 3917400 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(3916384..3917400) Delftia acidovorans SPH-1 5749154 YP_001564590.1 CDS Daci_3571 NC_010002.1 3917414 3917839 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3917414..3917839) Delftia acidovorans SPH-1 5749155 YP_001564591.1 CDS Daci_3572 NC_010002.1 3917871 3918503 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2303 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3917871..3918503) Delftia acidovorans SPH-1 5749156 YP_001564592.1 CDS Daci_3573 NC_010002.1 3918899 3920236 D KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3918899..3920236 Delftia acidovorans SPH-1 5749157 YP_001564593.1 CDS Daci_3574 NC_010002.1 3920555 3921136 D PFAM: manganese and iron superoxide dismutase; KEGG: aav:Aave_2568 superoxide dismutase; superoxide dismutase 3920555..3921136 Delftia acidovorans SPH-1 5749158 YP_001564594.1 CDS Daci_3575 NC_010002.1 3921229 3922773 R PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_0501 MFS superfamily drug efflux transporter; major facilitator transporter complement(3921229..3922773) Delftia acidovorans SPH-1 5749159 YP_001564595.1 CDS Daci_3576 NC_010002.1 3922888 3923769 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_0503 transcriptional regulator, LysR family; LysR family transcriptional regulator 3922888..3923769 Delftia acidovorans SPH-1 5749160 YP_001564596.1 CDS Daci_3577 NC_010002.1 3923804 3925024 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4098 transporter, putative; major facilitator transporter complement(3923804..3925024) Delftia acidovorans SPH-1 5749161 YP_001564597.1 CDS Daci_3578 NC_010002.1 3925147 3925743 D PFAM: regulatory protein TetR; KEGG: pfl:PFL_4099 transcriptional regulator, TetR family; TetR family transcriptional regulator 3925147..3925743 Delftia acidovorans SPH-1 5749162 YP_001564598.1 CDS Daci_3579 NC_010002.1 3925796 3926656 R KEGG: ajs:Ajs_1632 PEP phosphonomutase; PEP phosphonomutase complement(3925796..3926656) Delftia acidovorans SPH-1 5749163 YP_001564599.1 CDS Daci_3580 NC_010002.1 3926701 3927711 R PFAM: conserved hypothetical protein; KEGG: bbr:BB4843 hypothetical protein; hypothetical protein complement(3926701..3927711) Delftia acidovorans SPH-1 5749164 YP_001564600.1 CDS Daci_3581 NC_010002.1 3927756 3928751 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B2001 probable extra-cytoplasmic solute receptor; hypothetical protein complement(3927756..3928751) Delftia acidovorans SPH-1 5749165 YP_001564601.1 CDS Daci_3582 NC_010002.1 3928928 3930973 D KEGG: reh:H16_A1904 propionate catabolism activator; TIGRFAM: PAS sensor protein; propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; Fis family proprionate catabolism activator 3928928..3930973 Delftia acidovorans SPH-1 5749166 YP_001564602.1 CDS Daci_3583 NC_010002.1 3930983 3931843 R KEGG: aav:Aave_3441 hypothetical protein; hypothetical protein complement(3930983..3931843) Delftia acidovorans SPH-1 5749167 YP_001564603.1 CDS Daci_3584 NC_010002.1 3932010 3932942 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aci:ACIAD2742 putative transcriptional regulator; LysR family transcriptional regulator complement(3932010..3932942) Delftia acidovorans SPH-1 5749168 YP_001564604.1 CDS Daci_3585 NC_010002.1 3933010 3933942 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN2008 L-serine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 3933010..3933942 Delftia acidovorans SPH-1 5749169 YP_001564605.1 CDS Daci_3586 NC_010002.1 3933959 3935155 R TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP_2337 hypothetical protein; AcnD-accessory protein PrpF complement(3933959..3935155) Delftia acidovorans SPH-1 5749170 YP_001564606.1 CDS Daci_3587 NC_010002.1 3935155 3937782 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3935155..3937782) Delftia acidovorans SPH-1 5749171 YP_001564607.1 CDS Daci_3588 NC_010002.1 3937832 3938812 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_6149 twin-arginine translocation pathway signal; hypothetical protein complement(3937832..3938812) Delftia acidovorans SPH-1 5749172 YP_001564608.1 CDS Daci_3589 NC_010002.1 3939289 3942651 D KEGG: ajs:Ajs_2088 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3939289..3942651 Delftia acidovorans SPH-1 5749173 YP_001564609.1 CDS Daci_3590 NC_010002.1 3942698 3946312 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: aav:Aave_2843 chromosome segregation protein SMC; chromosome segregation protein SMC 3942698..3946312 Delftia acidovorans SPH-1 5749174 YP_001564610.1 CDS Daci_3591 NC_010002.1 3946370 3947716 D FtsZ-binding region; SMART: ZipA FtsZ-binding region; KEGG: aav:Aave_2842 ZipA, C-terminal FtsZ-binding region; ZipA protein 3946370..3947716 Delftia acidovorans SPH-1 5749175 YP_001564611.1 CDS Daci_3592 NC_010002.1 3947764 3949875 D KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 3947764..3949875 Delftia acidovorans SPH-1 5749176 YP_001564612.1 CDS Daci_3593 NC_010002.1 3949875 3950882 D PFAM: Patatin; KEGG: ajs:Ajs_2082 patatin; patatin 3949875..3950882 Delftia acidovorans SPH-1 5749177 YP_001564613.1 CDS Daci_3594 NC_010002.1 3950953 3953793 R PFAM: CheW domain protein; KEGG: mpt:Mpe_A2970 hypothetical protein; CheW protein complement(3950953..3953793) Delftia acidovorans SPH-1 5749178 YP_001564614.1 CDS Daci_3595 NC_010002.1 3954057 3954620 R PFAM: NUDIX hydrolase; KEGG: vei:Veis_3823 NUDIX hydrolase; NUDIX hydrolase complement(3954057..3954620) Delftia acidovorans SPH-1 5749179 YP_001564615.1 CDS Daci_3596 NC_010002.1 3954768 3955463 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_2473 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(3954768..3955463) Delftia acidovorans SPH-1 5749180 YP_001564616.1 CDS Daci_3597 NC_010002.1 3955597 3956262 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_2077 maleylacetoacetate isomerase; maleylacetoacetate isomerase 3955597..3956262 Delftia acidovorans SPH-1 5749181 YP_001564617.1 CDS Daci_3598 NC_010002.1 3956259 3957104 D PFAM: protein of unknown function DUF152; KEGG: vei:Veis_3820 protein of unknown function DUF152; hypothetical protein 3956259..3957104 Delftia acidovorans SPH-1 5749182 YP_001564618.1 CDS Daci_3599 NC_010002.1 3957024 3957359 R KEGG: ajs:Ajs_2075 hypothetical protein; hypothetical protein complement(3957024..3957359) Delftia acidovorans SPH-1 5749183 YP_001564619.1 CDS Daci_3600 NC_010002.1 3957501 3959396 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: aav:Aave_2477 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase 3957501..3959396 Delftia acidovorans SPH-1 5749184 YP_001564620.1 CDS Daci_3601 NC_010002.1 3959520 3960701 D KEGG: aav:Aave_2478 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3959520..3960701 Delftia acidovorans SPH-1 5749185 YP_001564621.1 CDS fabG NC_010002.1 3960914 3961651 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3960914..3961651 Delftia acidovorans SPH-1 5749186 YP_001564622.1 CDS Daci_3603 NC_010002.1 3962369 3963343 R PFAM: peptidase T2 asparaginase 2; KEGG: aav:Aave_1656 peptidase T2, asparaginase 2; peptidase T2 asparaginase 2 complement(3962369..3963343) Delftia acidovorans SPH-1 5749187 YP_001564623.1 CDS Daci_3604 NC_010002.1 3963340 3964422 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4446 putative amino acid ABC transporter permease protein; polar amino acid ABC transporter inner membrane protein complement(3963340..3964422) Delftia acidovorans SPH-1 5749188 YP_001564624.1 CDS Daci_3605 NC_010002.1 3964440 3965489 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1330 putative amino acid permease; polar amino acid ABC transporter inner membrane protein complement(3964440..3965489) Delftia acidovorans SPH-1 5749189 YP_001564625.1 CDS Daci_3606 NC_010002.1 3965510 3966547 R SMART: extracellular solute-binding protein family 3; KEGG: azo:azo1331 putative amino acid-binding protein; extracellular solute-binding protein complement(3965510..3966547) Delftia acidovorans SPH-1 5749190 YP_001564626.1 CDS Daci_3607 NC_010002.1 3966544 3967521 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pmy:Pmen_1089 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(3966544..3967521) Delftia acidovorans SPH-1 5749191 YP_001564627.1 CDS Daci_3608 NC_010002.1 3967749 3969812 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2480 ABC transporter-related protein; ABC transporter-like protein complement(3967749..3969812) Delftia acidovorans SPH-1 5749192 YP_001564628.1 CDS Daci_3609 NC_010002.1 3969907 3970926 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_0200 uncharacterized protein UPF0065; hypothetical protein complement(3969907..3970926) Delftia acidovorans SPH-1 5749193 YP_001564629.1 CDS Daci_3610 NC_010002.1 3970968 3972191 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ppu:PP_2039 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase domain-containing protein complement(3970968..3972191) Delftia acidovorans SPH-1 5749194 YP_001564630.1 CDS Daci_3611 NC_010002.1 3972193 3973791 R PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_B5309 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(3972193..3973791) Delftia acidovorans SPH-1 5749195 YP_001564631.1 CDS Daci_3612 NC_010002.1 3973967 3974965 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6272 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3973967..3974965) Delftia acidovorans SPH-1 5749196 YP_001564632.1 CDS Daci_3613 NC_010002.1 3974967 3975944 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3974967..3975944) Delftia acidovorans SPH-1 5749197 YP_001564633.1 CDS Daci_3614 NC_010002.1 3975965 3977125 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(3975965..3977125) Delftia acidovorans SPH-1 5749198 YP_001564634.1 CDS Daci_3615 NC_010002.1 3977212 3978381 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_2068 twitching motility protein; twitching motility protein complement(3977212..3978381) Delftia acidovorans SPH-1 5749199 YP_001564635.1 CDS dapD NC_010002.1 3978562 3979386 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(3978562..3979386) Delftia acidovorans SPH-1 5749200 YP_001564636.1 CDS Daci_3617 NC_010002.1 3979438 3980643 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(3979438..3980643) Delftia acidovorans SPH-1 5749201 YP_001564637.1 CDS Daci_3618 NC_010002.1 3980832 3982370 D PFAM: chemotaxis sensory transducer; KEGG: ajs:Ajs_2065 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3980832..3982370 Delftia acidovorans SPH-1 5749202 YP_001564638.1 CDS Daci_3619 NC_010002.1 3982479 3983195 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ajs:Ajs_2064 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B complement(3982479..3983195) Delftia acidovorans SPH-1 5749203 YP_001564639.1 CDS Daci_3620 NC_010002.1 3983219 3984592 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: aav:Aave_2488 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase complement(3983219..3984592) Delftia acidovorans SPH-1 5749204 YP_001564640.1 CDS Daci_3621 NC_010002.1 3984761 3985771 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: ajs:Ajs_2060 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A complement(3984761..3985771) Delftia acidovorans SPH-1 5749205 YP_001564641.1 CDS Daci_3622 NC_010002.1 3986133 3986471 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(3986133..3986471) Delftia acidovorans SPH-1 5749206 YP_001564642.1 CDS Daci_3623 NC_010002.1 3986531 3986956 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(3986531..3986956) Delftia acidovorans SPH-1 5749207 YP_001564643.1 CDS Daci_3624 NC_010002.1 3987012 3987191 R KEGG: mlo:mlr6150 transposase; transposase complement(3987012..3987191) Delftia acidovorans SPH-1 5749208 YP_001564644.1 CDS Daci_3625 NC_010002.1 3987292 3987540 R KEGG: bch:Bcen2424_3232 integrase, catalytic region; integrase catalytic subunit complement(3987292..3987540) Delftia acidovorans SPH-1 5749209 YP_001564645.1 CDS Daci_3628 NC_010002.1 3988482 3988748 R PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(3988482..3988748) Delftia acidovorans SPH-1 5749211 YP_001564646.1 CDS Daci_3629 NC_010002.1 3989255 3990184 D PFAM: acyltransferase 3; KEGG: psp:PSPPH_2622 exopolysaccharide production protein ExoZ, putative; acyltransferase 3 3989255..3990184 Delftia acidovorans SPH-1 5749212 YP_001564647.1 CDS Daci_3630 NC_010002.1 3990417 3990842 D KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein 3990417..3990842 Delftia acidovorans SPH-1 5749213 YP_001564648.1 CDS Daci_3631 NC_010002.1 3990902 3991240 D KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein 3990902..3991240 Delftia acidovorans SPH-1 5749214 YP_001564649.1 CDS Daci_3632 NC_010002.1 3991289 3992023 D KEGG: aav:Aave_2383 hypothetical protein; hypothetical protein 3991289..3992023 Delftia acidovorans SPH-1 5749215 YP_001564650.1 CDS Daci_3633 NC_010002.1 3992401 3992745 D KEGG: cvi:CV_1338 hypothetical protein; hypothetical protein 3992401..3992745 Delftia acidovorans SPH-1 5749216 YP_001564651.1 CDS Daci_3634 NC_010002.1 3992735 3992971 R hypothetical protein complement(3992735..3992971) Delftia acidovorans SPH-1 5749217 YP_001564652.1 CDS Daci_3635 NC_010002.1 3993087 3993380 R hypothetical protein complement(3993087..3993380) Delftia acidovorans SPH-1 5749218 YP_001564653.1 CDS Daci_3636 NC_010002.1 3993550 3994857 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mpt:Mpe_A2450 putative two-component response regulator; response regulator receiver modulated metal dependent phosphohydrolase 3993550..3994857 Delftia acidovorans SPH-1 5749219 YP_001564654.1 CDS Daci_3637 NC_010002.1 3995482 3996171 R PFAM: ANTAR domain protein; KEGG: vei:Veis_4901 response regulator receiver and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein complement(3995482..3996171) Delftia acidovorans SPH-1 5749220 YP_001564655.1 CDS Daci_3638 NC_010002.1 3996174 3997322 R KEGG: vei:Veis_4902 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; branched chain amino acid ABC transporter periplasmic ligand-binding protein complement(3996174..3997322) Delftia acidovorans SPH-1 5749221 YP_001564656.1 CDS Daci_3639 NC_010002.1 3997403 3999139 R PFAM: von Willebrand factor type A; KEGG: vei:Veis_4903 von Willebrand factor, type A; von Willebrand factor type A complement(3997403..3999139) Delftia acidovorans SPH-1 5749222 YP_001564657.1 CDS Daci_3640 NC_010002.1 3999152 4000009 R PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: vei:Veis_4904 ATPase associated with various cellular activities, AAA_5; ATPase complement(3999152..4000009) Delftia acidovorans SPH-1 5749223 YP_001564658.1 CDS amiE NC_010002.1 4000082 4001119 R aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase complement(4000082..4001119) Delftia acidovorans SPH-1 5749224 YP_001564659.1 CDS Daci_3642 NC_010002.1 4001427 4002836 R PFAM: Gluconate transporter; Citrate transporter; KEGG: pcr:Pcryo_1595 GntP family transporter; citrate transporter complement(4001427..4002836) Delftia acidovorans SPH-1 5749225 YP_001564660.1 CDS Daci_3643 NC_010002.1 4002949 4004283 R PFAM: cytochrome P450; KEGG: bur:Bcep18194_B1689 cytochrome P450; cytochrome P450 complement(4002949..4004283) Delftia acidovorans SPH-1 5749226 YP_001564661.1 CDS Daci_3644 NC_010002.1 4004353 4005492 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B1690 transcriptional regulator, AraC family; AraC family transcriptional regulator 4004353..4005492 Delftia acidovorans SPH-1 5749227 YP_001564662.1 CDS Daci_3645 NC_010002.1 4005831 4008065 D KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; NADP-dependent isocitrate dehydrogenase 4005831..4008065 Delftia acidovorans SPH-1 5749228 YP_001564663.1 CDS Daci_3646 NC_010002.1 4008220 4008567 R PFAM: RNP-1 like RNA-binding protein; KEGG: aav:Aave_2141 RNP-1-like RNA-binding protein; RNP-1 like RNA-binding protein complement(4008220..4008567) Delftia acidovorans SPH-1 5749229 YP_001564664.1 CDS Daci_3647 NC_010002.1 4008677 4008886 R KEGG: aav:Aave_2142 hypothetical protein; hypothetical protein complement(4008677..4008886) Delftia acidovorans SPH-1 5749230 YP_001564665.1 CDS Daci_3648 NC_010002.1 4009240 4009641 D KEGG: mes:Meso_4003 putative ferric uptake regulator, Fur family; ferric uptake regulator family protein 4009240..4009641 Delftia acidovorans SPH-1 5749231 YP_001564666.1 CDS Daci_3649 NC_010002.1 4009657 4010928 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bur:Bcep18194_B0316 cobalamin synthesis protein/P47K; cobalamin synthesis protein P47K 4009657..4010928 Delftia acidovorans SPH-1 5749232 YP_001564667.1 CDS Daci_3650 NC_010002.1 4011024 4011914 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 4011024..4011914 Delftia acidovorans SPH-1 5749233 YP_001564668.1 CDS rpmJ NC_010002.1 4011960 4012109 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 4011960..4012109 Delftia acidovorans SPH-1 5749234 YP_001564669.1 CDS Daci_3652 NC_010002.1 4012106 4012666 D KEGG: bur:Bcep18194_B0319 carbonic anhydrase/acetyltransferase isoleucine patch superfamily; carbonic anhydrase 4012106..4012666 Delftia acidovorans SPH-1 5749235 YP_001564670.1 CDS Daci_3653 NC_010002.1 4012684 4013133 D PFAM: ferric-uptake regulator; KEGG: rme:Rmet_2976 ferric uptake regulator, FUR family; ferric uptake regulator family protein 4012684..4013133 Delftia acidovorans SPH-1 5749236 YP_001564671.1 CDS Daci_3654 NC_010002.1 4013120 4013905 R KEGG: mxa:MXAN_1759 hypothetical protein; hypothetical protein complement(4013120..4013905) Delftia acidovorans SPH-1 5749237 YP_001564672.1 CDS Daci_3655 NC_010002.1 4013902 4014393 R PFAM: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4013902..4014393) Delftia acidovorans SPH-1 5749238 YP_001564673.1 CDS Daci_3656 NC_010002.1 4014417 4015949 R KEGG: vei:Veis_4739 hypothetical protein; hypothetical protein complement(4014417..4015949) Delftia acidovorans SPH-1 5749239 YP_001564674.1 CDS Daci_3657 NC_010002.1 4015964 4018171 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vei:Veis_4740 TonB-dependent siderophore receptor; TonB-dependent receptor complement(4015964..4018171) Delftia acidovorans SPH-1 5749240 YP_001564675.1 CDS Daci_3658 NC_010002.1 4018294 4018665 R KEGG: aav:Aave_4449 hypothetical protein; hypothetical protein complement(4018294..4018665) Delftia acidovorans SPH-1 5749241 YP_001564676.1 CDS Daci_3659 NC_010002.1 4018675 4019217 R PFAM: protein of unknown function DUF192; KEGG: aav:Aave_2570 protein of unknown function DUF192; hypothetical protein complement(4018675..4019217) Delftia acidovorans SPH-1 5749242 YP_001564677.1 CDS Daci_3660 NC_010002.1 4019361 4019582 R KEGG: aav:Aave_2571 hypothetical protein; hypothetical protein complement(4019361..4019582) Delftia acidovorans SPH-1 5749243 YP_001564678.1 CDS Daci_3661 NC_010002.1 4019792 4021054 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 4019792..4021054 Delftia acidovorans SPH-1 5749244 YP_001564679.1 CDS Daci_3662 NC_010002.1 4021103 4023496 R PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like; Ig family protein complement(4021103..4023496) Delftia acidovorans SPH-1 5749245 YP_001564680.1 CDS Daci_3663 NC_010002.1 4023767 4024537 R KEGG: rso:RSc1444 hypothetical protein; hypothetical protein complement(4023767..4024537) Delftia acidovorans SPH-1 5749246 YP_001564681.1 CDS Daci_3664 NC_010002.1 4024555 4025253 D KEGG: rfr:Rfer_1207 aspartyl protease-like; aspartyl protease-like protein 4024555..4025253 Delftia acidovorans SPH-1 5749247 YP_001564682.1 CDS Daci_3665 NC_010002.1 4025290 4026414 D PFAM: beta-lactamase; KEGG: stp:Strop_0635 beta-lactamase; beta-lactamase 4025290..4026414 Delftia acidovorans SPH-1 5749248 YP_001564683.1 CDS Daci_3666 NC_010002.1 4026649 4027719 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4026649..4027719 Delftia acidovorans SPH-1 5749249 YP_001564684.1 CDS Daci_3667 NC_010002.1 4027747 4028382 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB4264 hypothetical protein; lysine exporter protein LysE/YggA complement(4027747..4028382) Delftia acidovorans SPH-1 5749250 YP_001564685.1 CDS Daci_3668 NC_010002.1 4028509 4030038 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB4262 putative GntR-family transcriptional regulator; transcriptional regulator 4028509..4030038 Delftia acidovorans SPH-1 5749251 YP_001564686.1 CDS Daci_3669 NC_010002.1 4030151 4030948 D KEGG: pol:Bpro_4259 putative lipoprotein; putative lipoprotein 4030151..4030948 Delftia acidovorans SPH-1 5749252 YP_001564687.1 CDS Daci_3670 NC_010002.1 4030994 4031329 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_1707 cupin 2 protein; cupin complement(4030994..4031329) Delftia acidovorans SPH-1 5749253 YP_001564688.1 CDS Daci_3671 NC_010002.1 4031430 4031882 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: tbd:Tbd_0651 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(4031430..4031882) Delftia acidovorans SPH-1 5749254 YP_001564689.1 CDS Daci_3672 NC_010002.1 4032104 4033087 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_1198 uncharacterized protein UPF0065; hypothetical protein 4032104..4033087 Delftia acidovorans SPH-1 5749255 YP_001564690.1 CDS Daci_3673 NC_010002.1 4033099 4034520 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: aav:Aave_0178 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4033099..4034520 Delftia acidovorans SPH-1 5749256 YP_001564691.1 CDS Daci_3674 NC_010002.1 4034505 4034900 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2, conserved barrel domain protein; cupin 4034505..4034900 Delftia acidovorans SPH-1 5749257 YP_001564692.1 CDS Daci_3675 NC_010002.1 4034958 4036121 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 4034958..4036121 Delftia acidovorans SPH-1 5749258 YP_001564693.1 CDS Daci_3676 NC_010002.1 4036289 4037242 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0175 transcriptional regulator, LysR family; LysR family transcriptional regulator 4036289..4037242 Delftia acidovorans SPH-1 5749259 YP_001564694.1 CDS Daci_3677 NC_010002.1 4037223 4037543 R hypothetical protein complement(4037223..4037543) Delftia acidovorans SPH-1 5749260 YP_001564695.1 CDS Daci_3678 NC_010002.1 4037740 4038471 R hypothetical protein complement(4037740..4038471) Delftia acidovorans SPH-1 5749261 YP_001564696.1 CDS Daci_3679 NC_010002.1 4038892 4041831 R KEGG: nha:Nham_0235 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(4038892..4041831) Delftia acidovorans SPH-1 5749262 YP_001564697.1 CDS Daci_3680 NC_010002.1 4041985 4043085 D KEGG: vei:Veis_4644 porin, gram-negative type; porin 4041985..4043085 Delftia acidovorans SPH-1 5749263 YP_001564698.1 CDS Daci_3681 NC_010002.1 4043207 4044787 D KEGG: esa:ESA_01915 hypothetical protein; hypothetical protein 4043207..4044787 Delftia acidovorans SPH-1 5749264 YP_001564699.1 CDS Daci_3682 NC_010002.1 4045257 4047062 D PFAM: NERD domain protein; KEGG: aav:Aave_4619 hypothetical protein; NERD domain-containing protein 4045257..4047062 Delftia acidovorans SPH-1 5749265 YP_001564700.1 CDS Daci_3683 NC_010002.1 4047179 4047637 R KEGG: bbr:BB1251 hypothetical protein; hypothetical protein complement(4047179..4047637) Delftia acidovorans SPH-1 5749266 YP_001564701.1 CDS Daci_3684 NC_010002.1 4048972 4050216 R KEGG: swi:Swit_3482 hypothetical protein; hypothetical protein complement(4048972..4050216) Delftia acidovorans SPH-1 5749267 YP_001564702.1 CDS Daci_3685 NC_010002.1 4050648 4050968 R KEGG: pca:Pcar_0535 hypothetical protein; hypothetical protein complement(4050648..4050968) Delftia acidovorans SPH-1 5749268 YP_001564703.1 CDS Daci_3686 NC_010002.1 4052136 4052513 D hypothetical protein 4052136..4052513 Delftia acidovorans SPH-1 5749269 YP_001564704.1 CDS Daci_3687 NC_010002.1 4052623 4053168 R PFAM: Propeptide PepSY amd peptidase M4; KEGG: prw:PsycPRwf_1922 propeptide, PepSY amd peptidase M4; peptidase complement(4052623..4053168) Delftia acidovorans SPH-1 5749270 YP_001564705.1 CDS Daci_3688 NC_010002.1 4053311 4054513 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(4053311..4054513) Delftia acidovorans SPH-1 5749271 YP_001564706.1 CDS Daci_3689 NC_010002.1 4054556 4056409 R hypothetical protein complement(4054556..4056409) Delftia acidovorans SPH-1 5749272 YP_001564707.1 CDS Daci_3690 NC_010002.1 4056518 4057411 R KEGG: ajs:Ajs_2005 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(4056518..4057411) Delftia acidovorans SPH-1 5749273 YP_001564708.1 CDS Daci_3691 NC_010002.1 4057449 4057898 R KEGG: reh:H16_A3515 hypothetical protein; hypothetical protein complement(4057449..4057898) Delftia acidovorans SPH-1 5749274 YP_001564709.1 CDS Daci_3692 NC_010002.1 4057920 4058384 R KEGG: ajs:Ajs_2006 hypothetical protein; hypothetical protein complement(4057920..4058384) Delftia acidovorans SPH-1 5749275 YP_001564710.1 CDS Daci_3693 NC_010002.1 4058408 4059574 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(4058408..4059574) Delftia acidovorans SPH-1 5749276 YP_001564711.1 CDS Daci_3694 NC_010002.1 4059655 4060056 R PFAM: protein of unknown function DUF1311; KEGG: aav:Aave_2603 hypothetical protein; hypothetical protein complement(4059655..4060056) Delftia acidovorans SPH-1 5749277 YP_001564712.1 CDS Daci_3695 NC_010002.1 4060118 4061641 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(4060118..4061641) Delftia acidovorans SPH-1 5749278 YP_001564713.1 CDS Daci_3696 NC_010002.1 4061925 4062380 R PFAM: regulatory protein MarR; KEGG: pol:Bpro_2197 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4061925..4062380) Delftia acidovorans SPH-1 5749279 YP_001564714.1 CDS Daci_3697 NC_010002.1 4062470 4063474 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2198 uncharacterized protein UPF0065; hypothetical protein 4062470..4063474 Delftia acidovorans SPH-1 5749280 YP_001564715.1 CDS Daci_3698 NC_010002.1 4063510 4064763 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_2199 monooxygenase, FAD-binding; hypothetical protein 4063510..4064763 Delftia acidovorans SPH-1 5749281 YP_001564716.1 CDS Daci_3699 NC_010002.1 4064778 4065815 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_3148 uncharacterized protein UPF0065; hypothetical protein complement(4064778..4065815) Delftia acidovorans SPH-1 5749282 YP_001564717.1 CDS Daci_3700 NC_010002.1 4065932 4066573 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pna:Pnap_3147 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(4065932..4066573) Delftia acidovorans SPH-1 5749283 YP_001564718.1 CDS Daci_3701 NC_010002.1 4066593 4067342 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pna:Pnap_3146 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(4066593..4067342) Delftia acidovorans SPH-1 5749284 YP_001564719.1 CDS Daci_3702 NC_010002.1 4067339 4068376 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: pna:Pnap_3145 cupin 2, conserved barrel domain protein; cupin complement(4067339..4068376) Delftia acidovorans SPH-1 5749285 YP_001564720.1 CDS Daci_3703 NC_010002.1 4068393 4069601 R catalyzes the formation of catechol from salicylate; salicylate hydroxylase complement(4068393..4069601) Delftia acidovorans SPH-1 5749286 YP_001564721.1 CDS Daci_3704 NC_010002.1 4069806 4070342 D PFAM: regulatory protein MarR; KEGG: pna:Pnap_3143 transcriptional regulator, MarR family; MarR family transcriptional regulator 4069806..4070342 Delftia acidovorans SPH-1 5749287 YP_001564722.1 CDS Daci_3705 NC_010002.1 4070357 4071259 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2010 transcriptional regulator, LysR family; LysR family transcriptional regulator 4070357..4071259 Delftia acidovorans SPH-1 5749288 YP_001564723.1 CDS Daci_3706 NC_010002.1 4071335 4072381 D PFAM: Patatin; KEGG: aav:Aave_2086 patatin; patatin 4071335..4072381 Delftia acidovorans SPH-1 5749289 YP_001564724.1 CDS glyA NC_010002.1 4072403 4073677 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(4072403..4073677) Delftia acidovorans SPH-1 5749290 YP_001564725.1 CDS Daci_3708 NC_010002.1 4073724 4074962 R TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mca:MCA2079 acetylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase complement(4073724..4074962) Delftia acidovorans SPH-1 5749291 YP_001564726.1 CDS Daci_3709 NC_010002.1 4075021 4075872 R PFAM: alanine racemase domain protein; KEGG: eca:ECA4047 putative alanine racemase; alanine racemase domain-containing protein complement(4075021..4075872) Delftia acidovorans SPH-1 5749292 YP_001564727.1 CDS Daci_3710 NC_010002.1 4075877 4077133 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: mms:mma_2006 benzoate transport protein; benzoate transporter complement(4075877..4077133) Delftia acidovorans SPH-1 5749293 YP_001564728.1 CDS Daci_3711 NC_010002.1 4077325 4078839 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB0707 probable GntR-family transcriptional regulator; transcriptional regulator 4077325..4078839 Delftia acidovorans SPH-1 5749294 YP_001564729.1 CDS Daci_3712 NC_010002.1 4078870 4080150 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(4078870..4080150) Delftia acidovorans SPH-1 5749295 YP_001564730.1 CDS Daci_3713 NC_010002.1 4080645 4081607 D KEGG: mxa:MXAN_1292 hypothetical protein; hypothetical protein 4080645..4081607 Delftia acidovorans SPH-1 5749296 YP_001564731.1 CDS Daci_3714 NC_010002.1 4081604 4082683 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ppr:PBPRB0302 conserved hypothetical protein; ferredoxin 4081604..4082683 Delftia acidovorans SPH-1 5749297 YP_001564732.1 CDS Daci_3715 NC_010002.1 4082735 4083439 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 4082735..4083439 Delftia acidovorans SPH-1 5749298 YP_001564733.1 CDS Daci_3716 NC_010002.1 4083534 4083902 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mms:mma_1686 hypothetical protein; antibiotic biosynthesis monooxygenase 4083534..4083902 Delftia acidovorans SPH-1 5749299 YP_001564734.1 CDS Daci_3717 NC_010002.1 4084116 4084526 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_2580 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(4084116..4084526) Delftia acidovorans SPH-1 5749300 YP_001564735.1 CDS Daci_3718 NC_010002.1 4084523 4084867 R PFAM: transferase hexapeptide repeat containing protein; KEGG: cbe:Cbei_3719 maltose O-acetyltransferase; hexapaptide repeat-containing transferase complement(4084523..4084867) Delftia acidovorans SPH-1 5749301 YP_001564736.1 CDS Daci_3719 NC_010002.1 4085818 4086285 D hypothetical protein 4085818..4086285 Delftia acidovorans SPH-1 5749302 YP_001564737.1 CDS Daci_3720 NC_010002.1 4086686 4090591 D TIGRFAM: YD repeat protein; KEGG: xac:XAC3245 RhsD protein; YD repeat-containing protein 4086686..4090591 Delftia acidovorans SPH-1 5749303 YP_001564738.1 CDS Daci_3721 NC_010002.1 4091362 4091601 D hypothetical protein 4091362..4091601 Delftia acidovorans SPH-1 5749304 YP_001564739.1 CDS Daci_3722 NC_010002.1 4091644 4091982 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(4091644..4091982) Delftia acidovorans SPH-1 5749305 YP_001564740.1 CDS Daci_3723 NC_010002.1 4092042 4092467 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(4092042..4092467) Delftia acidovorans SPH-1 5749306 YP_001564741.1 CDS Daci_3724 NC_010002.1 4092587 4093444 D KEGG: pau:PA14_20520 hypothetical protein; Rhs family protein-like protein 4092587..4093444 Delftia acidovorans SPH-1 5749307 YP_001564742.1 CDS Daci_3725 NC_010002.1 4093579 4093908 D hypothetical protein 4093579..4093908 Delftia acidovorans SPH-1 5749308 YP_001564743.1 CDS Daci_3726 NC_010002.1 4094148 4094816 D KEGG: sdn:Sden_2437 YD repeat; hypothetical protein 4094148..4094816 Delftia acidovorans SPH-1 5749309 YP_001564744.1 CDS Daci_3727 NC_010002.1 4095126 4095689 D KEGG: sdn:Sden_2437 YD repeat; hypothetical protein 4095126..4095689 Delftia acidovorans SPH-1 5749310 YP_001564745.1 CDS Daci_3728 NC_010002.1 4096385 4096705 D PFAM: protein of unknown function DUF74; KEGG: gsu:GSU2791 hypothetical protein; hypothetical protein 4096385..4096705 Delftia acidovorans SPH-1 5749311 YP_001564746.1 CDS Daci_3729 NC_010002.1 4096755 4097693 R PFAM: periplasmic binding protein; KEGG: ajs:Ajs_1099 periplasmic binding protein; periplasmic-binding protein complement(4096755..4097693) Delftia acidovorans SPH-1 5749312 YP_001564747.1 CDS Daci_3730 NC_010002.1 4097699 4099612 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pna:Pnap_2368 TonB-dependent receptor, plug; TonB-dependent receptor complement(4097699..4099612) Delftia acidovorans SPH-1 5749313 YP_001564748.1 CDS Daci_3731 NC_010002.1 4100005 4100394 D KEGG: pfl:PFL_4030 hypothetical protein; hypothetical protein 4100005..4100394 Delftia acidovorans SPH-1 5749314 YP_001564749.1 CDS Daci_3732 NC_010002.1 4100506 4100697 D PFAM: helix-turn-helix domain protein; KEGG: pau:PA14_11150 putative transcriptional regulator; XRE family transcriptional regulator 4100506..4100697 Delftia acidovorans SPH-1 5749315 YP_001564750.1 CDS Daci_3733 NC_010002.1 4100707 4101540 R PFAM: protein of unknown function DUF81; KEGG: pfl:PFL_4527 hypothetical protein; hypothetical protein complement(4100707..4101540) Delftia acidovorans SPH-1 5749316 YP_001564751.1 CDS Daci_3734 NC_010002.1 4101642 4102409 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pap:PSPA7_4726 probable transcriptional regulator; AraC family transcriptional regulator 4101642..4102409 Delftia acidovorans SPH-1 5749317 YP_001564752.1 CDS Daci_3735 NC_010002.1 4102406 4103617 R PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB2331 hypothetical protein; major facilitator transporter complement(4102406..4103617) Delftia acidovorans SPH-1 5749318 YP_001564753.1 CDS Daci_3736 NC_010002.1 4103736 4104143 D PFAM: helix-turn-helix HxlR type; KEGG: bbr:BB2332 putative transcriptional regulator; HxlR family transcriptional regulator 4103736..4104143 Delftia acidovorans SPH-1 5749319 YP_001564754.1 CDS Daci_3737 NC_010002.1 4104153 4104638 D KEGG: mpt:Mpe_A0377 rod shape-determining-related protein; rod shape-determining-like protein 4104153..4104638 Delftia acidovorans SPH-1 5749320 YP_001564755.1 CDS Daci_3738 NC_010002.1 4104734 4106731 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_5169 iron-regulated outer membrane virulence protein; TonB-dependent receptor complement(4104734..4106731) Delftia acidovorans SPH-1 5749321 YP_001564756.1 CDS Daci_3739 NC_010002.1 4107092 4108540 R involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease complement(4107092..4108540) Delftia acidovorans SPH-1 5749322 YP_001564757.1 CDS Daci_3740 NC_010002.1 4108817 4109227 R KEGG: aav:Aave_3004 hypothetical protein; hypothetical protein complement(4108817..4109227) Delftia acidovorans SPH-1 5749323 YP_001564758.1 CDS Daci_3741 NC_010002.1 4109310 4110401 R KEGG: bxe:Bxe_B2649 hypothetical protein; hypothetical protein complement(4109310..4110401) Delftia acidovorans SPH-1 5749324 YP_001564759.1 CDS Daci_3742 NC_010002.1 4110570 4112204 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3448 probable multidrug resistance B (translocase) transmembrane protein; EmrB/QacA family drug resistance transporter complement(4110570..4112204) Delftia acidovorans SPH-1 5749325 YP_001564760.1 CDS Daci_3743 NC_010002.1 4112250 4113611 R PFAM: secretion protein HlyD family protein; KEGG: eba:ebA3446 putative multidrug resistance protein; secretion protein HlyD family protein complement(4112250..4113611) Delftia acidovorans SPH-1 5749326 YP_001564761.1 CDS Daci_3744 NC_010002.1 4113744 4115219 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: eba:ebA3445 putative outer membrane protein; RND efflux system outer membrane lipoprotein complement(4113744..4115219) Delftia acidovorans SPH-1 5749327 YP_001564762.1 CDS Daci_3745 NC_010002.1 4115290 4115826 R PFAM: regulatory protein MarR; KEGG: rfr:Rfer_1513 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4115290..4115826) Delftia acidovorans SPH-1 5749328 YP_001564763.1 CDS Daci_3746 NC_010002.1 4115991 4116305 R KEGG: reh:H16_A1823 hypothetical protein; hypothetical protein complement(4115991..4116305) Delftia acidovorans SPH-1 5749329 YP_001564764.1 CDS Daci_3747 NC_010002.1 4116626 4117363 D PFAM: AzlC family protein; KEGG: bte:BTH_I0320 brancheD-chain amino acid transport protein AzlC; AzlC family protein 4116626..4117363 Delftia acidovorans SPH-1 5749330 YP_001564765.1 CDS Daci_3748 NC_010002.1 4117367 4117663 D PFAM: branched-chain amino acid transport; KEGG: bte:BTH_I0321 domain of unknown function (DUF931) superfamily; branched-chain amino acid transport 4117367..4117663 Delftia acidovorans SPH-1 5749331 YP_001564766.1 CDS Daci_3749 NC_010002.1 4117727 4118071 D KEGG: eca:ECA2237 hypothetical protein; hypothetical protein 4117727..4118071 Delftia acidovorans SPH-1 5749332 YP_001564767.1 CDS Daci_3750 NC_010002.1 4118353 4119954 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tbd:Tbd_1622 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4118353..4119954 Delftia acidovorans SPH-1 5749333 YP_001564768.1 CDS Daci_3751 NC_010002.1 4120094 4122037 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(4120094..4122037) Delftia acidovorans SPH-1 5749334 YP_001564769.1 CDS Daci_3752 NC_010002.1 4122314 4122949 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_2039 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4122314..4122949) Delftia acidovorans SPH-1 5749335 YP_001564770.1 CDS Daci_3753 NC_010002.1 4123025 4125241 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 4123025..4125241 Delftia acidovorans SPH-1 5749336 YP_001564771.1 CDS Daci_3754 NC_010002.1 4125204 4126325 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 4125204..4126325 Delftia acidovorans SPH-1 5749337 YP_001564772.1 CDS Daci_3755 NC_010002.1 4126382 4127914 D PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase; carboxyl transferase 4126382..4127914 Delftia acidovorans SPH-1 5749338 YP_001564773.1 CDS Daci_3756 NC_010002.1 4128126 4130174 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: ajs:Ajs_2043 carbamoyl-phosphate synthase L chain, ATP-binding; acetyl-CoA carboxylase, biotin carboxylase 4128126..4130174 Delftia acidovorans SPH-1 5749339 YP_001564774.1 CDS Daci_3757 NC_010002.1 4130208 4130615 R PFAM: PilT protein domain protein; KEGG: pde:Pden_0483 PilT protein domain protein; PilT domain-containing protein complement(4130208..4130615) Delftia acidovorans SPH-1 5749340 YP_001564775.1 CDS Daci_3758 NC_010002.1 4130615 4130881 R KEGG: rpd:RPD_2062 SpoVT/AbrB-like; SpoVT/AbrB-like protein complement(4130615..4130881) Delftia acidovorans SPH-1 5749341 YP_001564776.1 CDS Daci_3759 NC_010002.1 4131121 4132092 D PFAM: response regulator receiver; CheW domain protein; KEGG: vei:Veis_1763 putative CheW protein; response regulator receiver modulated CheW protein 4131121..4132092 Delftia acidovorans SPH-1 5749342 YP_001564777.1 CDS Daci_3760 NC_010002.1 4132129 4133223 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2798 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(4132129..4133223) Delftia acidovorans SPH-1 5749343 YP_001564778.1 CDS Daci_3761 NC_010002.1 4133380 4133967 D TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ajs:Ajs_2053 carbohydrate kinase, thermoresistant glucokinase family; carbohydrate kinase 4133380..4133967 Delftia acidovorans SPH-1 5749344 YP_001564779.1 CDS Daci_3762 NC_010002.1 4133986 4134492 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aav:Aave_2796 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4133986..4134492 Delftia acidovorans SPH-1 5749345 YP_001564780.1 CDS Daci_3763 NC_010002.1 4134505 4135785 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_2051 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 4134505..4135785 Delftia acidovorans SPH-1 5749346 YP_001564781.1 CDS Daci_3764 NC_010002.1 4135814 4136833 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_2050 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4135814..4136833 Delftia acidovorans SPH-1 5749347 YP_001564782.1 CDS Daci_3765 NC_010002.1 4136944 4138770 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 4136944..4138770 Delftia acidovorans SPH-1 5749348 YP_001564783.1 CDS Daci_3766 NC_010002.1 4138755 4139393 D KEGG: aav:Aave_2792 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 4138755..4139393 Delftia acidovorans SPH-1 5749349 YP_001564784.1 CDS Daci_3767 NC_010002.1 4140009 4141643 D PFAM: chemotaxis sensory transducer; KEGG: har:HEAR3262 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4140009..4141643 Delftia acidovorans SPH-1 5749350 YP_001564785.1 CDS Daci_3768 NC_010002.1 4141755 4144052 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bja:bll5864 hypothetical protein; diguanylate cyclase/phosphodiesterase 4141755..4144052 Delftia acidovorans SPH-1 5749351 YP_001564786.1 CDS Daci_3769 NC_010002.1 4144123 4145022 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A2910 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 4144123..4145022 Delftia acidovorans SPH-1 5749352 YP_001564787.1 CDS Daci_3770 NC_010002.1 4145131 4146114 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2752 uncharacterized protein UPF0065; hypothetical protein 4145131..4146114 Delftia acidovorans SPH-1 5749353 YP_001564788.1 CDS Daci_3771 NC_010002.1 4146124 4147311 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A2908 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 4146124..4147311 Delftia acidovorans SPH-1 5749354 YP_001564789.1 CDS Daci_3772 NC_010002.1 4147308 4148072 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A2907 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 4147308..4148072 Delftia acidovorans SPH-1 5749355 YP_001564790.1 CDS Daci_3773 NC_010002.1 4148115 4149542 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_4255 TonB family protein; TonB family protein complement(4148115..4149542) Delftia acidovorans SPH-1 5749356 YP_001564791.1 CDS Daci_3774 NC_010002.1 4149562 4151280 R PFAM: Heat shock protein 70; KEGG: aav:Aave_4256 heat shock protein 70; 2-alkenal reductase complement(4149562..4151280) Delftia acidovorans SPH-1 5749357 YP_001564792.1 CDS Daci_3775 NC_010002.1 4151579 4152406 D PFAM: Ricin B lectin; KEGG: sco:SCO7212 secreted glycosyl hydrolase; Ricin B lectin 4151579..4152406 Delftia acidovorans SPH-1 5749358 YP_001564793.1 CDS Daci_3776 NC_010002.1 4152416 4153258 D PFAM: protein of unknown function DUF218; KEGG: pcr:Pcryo_2372 protein of unknown function DUF218; hypothetical protein 4152416..4153258 Delftia acidovorans SPH-1 5749359 YP_001564794.1 CDS Daci_3777 NC_010002.1 4153336 4153806 D KEGG: ajs:Ajs_2044 lactoylglutathione lyase; lactoylglutathione lyase 4153336..4153806 Delftia acidovorans SPH-1 5749360 YP_001564795.1 CDS Daci_3778 NC_010002.1 4153814 4155883 R KEGG: aav:Aave_0646 UvrD/REP helicase; UvrD/REP helicase complement(4153814..4155883) Delftia acidovorans SPH-1 5749361 YP_001564796.1 CDS Daci_3779 NC_010002.1 4156197 4157258 D KEGG: aav:Aave_2518 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4156197..4157258 Delftia acidovorans SPH-1 5749362 YP_001564797.1 CDS Daci_3780 NC_010002.1 4157295 4158446 R PFAM: integrase family protein; KEGG: rfr:Rfer_2261 phage integrase; integrase family protein complement(4157295..4158446) Delftia acidovorans SPH-1 5749363 YP_001564798.1 CDS Daci_3781 NC_010002.1 4158735 4159718 D KEGG: rfr:Rfer_2260 hypothetical protein; hypothetical protein 4158735..4159718 Delftia acidovorans SPH-1 5749364 YP_001564799.1 CDS Daci_3782 NC_010002.1 4159740 4160441 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mll6988 transcriptional regulator; GntR family transcriptional regulator complement(4159740..4160441) Delftia acidovorans SPH-1 5749365 YP_001564800.1 CDS Daci_3783 NC_010002.1 4160727 4162328 D PFAM: gamma-glutamyltranspeptidase; KEGG: ret:RHE_CH02146 gamma-glutamyltranspeptidase protein; gamma-glutamyltransferase 4160727..4162328 Delftia acidovorans SPH-1 5749366 YP_001564801.1 CDS Daci_3784 NC_010002.1 4162413 4163081 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bbr:BB1600 putative GntR-family transcriptional regulator; GntR family transcriptional regulator complement(4162413..4163081) Delftia acidovorans SPH-1 5749367 YP_001564802.1 CDS Daci_3785 NC_010002.1 4163254 4164342 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B0983 probable extra-cytoplasmic solute receptor; hypothetical protein 4163254..4164342 Delftia acidovorans SPH-1 5749368 YP_001564803.1 CDS Daci_3786 NC_010002.1 4164411 4166243 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(4164411..4166243) Delftia acidovorans SPH-1 5749369 YP_001564804.1 CDS Daci_3787 NC_010002.1 4166379 4167716 R PFAM: beta-lactamase; KEGG: mms:mma_2923 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase complement(4166379..4167716) Delftia acidovorans SPH-1 5749370 YP_001564805.1 CDS Daci_3788 NC_010002.1 4167865 4168797 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_3719 transcriptional regulator, LysR family; LysR family transcriptional regulator 4167865..4168797 Delftia acidovorans SPH-1 5749371 YP_001564806.1 CDS Daci_3789 NC_010002.1 4168802 4169623 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pfl:PFL_2239 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(4168802..4169623) Delftia acidovorans SPH-1 5749372 YP_001564807.1 CDS Daci_3790 NC_010002.1 4169571 4170359 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0998 Fe uptake system permease; ABC transporter-like protein complement(4169571..4170359) Delftia acidovorans SPH-1 5749373 YP_001564808.1 CDS Daci_3791 NC_010002.1 4170356 4171441 R PFAM: transport system permease protein; KEGG: ava:Ava_B0152 transport system permease protein; transport system permease complement(4170356..4171441) Delftia acidovorans SPH-1 5749374 YP_001564809.1 CDS Daci_3792 NC_010002.1 4171428 4172480 R PFAM: periplasmic binding protein; KEGG: pmy:Pmen_4565 periplasmic binding protein; periplasmic-binding protein complement(4171428..4172480) Delftia acidovorans SPH-1 5749375 YP_001564810.1 CDS Daci_3793 NC_010002.1 4172480 4174642 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mfa:Mfla_0109 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(4172480..4174642) Delftia acidovorans SPH-1 5749376 YP_001564811.1 CDS Daci_3794 NC_010002.1 4175095 4175808 R KEGG: rme:Rmet_3764 hypothetical protein; hypothetical protein complement(4175095..4175808) Delftia acidovorans SPH-1 5749377 YP_001564812.1 CDS Daci_3795 NC_010002.1 4175809 4176468 R PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein; 2OG-Fe(II) oxygenase complement(4175809..4176468) Delftia acidovorans SPH-1 5749378 YP_001564813.1 CDS Daci_3796 NC_010002.1 4176472 4177455 R KEGG: reu:Reut_B5118 hypothetical protein; hypothetical protein complement(4176472..4177455) Delftia acidovorans SPH-1 5749379 YP_001564814.1 CDS Daci_3797 NC_010002.1 4177674 4178255 D hypothetical protein 4177674..4178255 Delftia acidovorans SPH-1 5749380 YP_001564815.1 CDS Daci_3798 NC_010002.1 4178403 4179653 D hypothetical protein 4178403..4179653 Delftia acidovorans SPH-1 5749381 YP_001564816.1 CDS Daci_3799 NC_010002.1 4179650 4181848 D KEGG: sfu:Sfum_0786 hypothetical protein; hypothetical protein 4179650..4181848 Delftia acidovorans SPH-1 5749382 YP_001564817.1 CDS Daci_3800 NC_010002.1 4182008 4183105 R hypothetical protein complement(4182008..4183105) Delftia acidovorans SPH-1 5749383 YP_001564818.1 CDS Daci_3801 NC_010002.1 4183404 4184411 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3271 uncharacterized protein UPF0065; hypothetical protein 4183404..4184411 Delftia acidovorans SPH-1 5749384 YP_001564819.1 CDS Daci_3802 NC_010002.1 4184448 4185131 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_1450 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4184448..4185131 Delftia acidovorans SPH-1 5749385 YP_001564820.1 CDS Daci_3803 NC_010002.1 4185109 4186527 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pol:Bpro_1451 histidine kinase; histidine kinase 4185109..4186527 Delftia acidovorans SPH-1 5749386 YP_001564821.1 CDS Daci_3804 NC_010002.1 4186540 4187589 D PFAM: conserved hypothetical protein; KEGG: bbr:BB5009 putative tricarboxylic transport membrane protein; hypothetical protein 4186540..4187589 Delftia acidovorans SPH-1 5749387 YP_001564822.1 CDS Daci_3806 NC_010002.1 4187934 4188587 D KEGG: har:HEAR0855 hypothetical protein; hypothetical protein 4187934..4188587 Delftia acidovorans SPH-1 5749389 YP_001564823.1 CDS Daci_3807 NC_010002.1 4188653 4189231 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_1917 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4188653..4189231 Delftia acidovorans SPH-1 5749390 YP_001564824.1 CDS Daci_3808 NC_010002.1 4189228 4189974 D KEGG: psp:PSPPH_0345 RNA polymerase sigma-70 family protein; RNA polymerase sigma-70 family protein 4189228..4189974 Delftia acidovorans SPH-1 5749391 YP_001564825.1 CDS Daci_3809 NC_010002.1 4190075 4191253 R PFAM: porin Gram-negative type; KEGG: reh:H16_A0625 outer membrane protein (porin); porin complement(4190075..4191253) Delftia acidovorans SPH-1 5749392 YP_001564826.1 CDS Daci_3810 NC_010002.1 4191370 4191822 R KEGG: vei:Veis_1359 hypothetical protein; hypothetical protein complement(4191370..4191822) Delftia acidovorans SPH-1 5749393 YP_001564827.1 CDS Daci_3811 NC_010002.1 4191992 4193272 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1366 transcriptional regulator, LysR family; LysR family transcriptional regulator 4191992..4193272 Delftia acidovorans SPH-1 5749394 YP_001564828.1 CDS Daci_3812 NC_010002.1 4193291 4194010 R PFAM: alpha/beta hydrolase fold; KEGG: vei:Veis_1360 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(4193291..4194010) Delftia acidovorans SPH-1 5749395 YP_001564829.1 CDS Daci_3813 NC_010002.1 4194007 4194879 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(4194007..4194879) Delftia acidovorans SPH-1 5749396 YP_001564830.1 CDS Daci_3814 NC_010002.1 4194879 4195286 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(4194879..4195286) Delftia acidovorans SPH-1 5749397 YP_001564831.1 CDS Daci_3815 NC_010002.1 4195325 4196665 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3480 major facilitator family transporter; major facilitator transporter complement(4195325..4196665) Delftia acidovorans SPH-1 5749398 YP_001564832.1 CDS Daci_3816 NC_010002.1 4196959 4199211 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: aav:Aave_1485 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(4196959..4199211) Delftia acidovorans SPH-1 5749399 YP_001564833.1 CDS Daci_3817 NC_010002.1 4199216 4200166 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aav:Aave_1486 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding complement(4199216..4200166) Delftia acidovorans SPH-1 5749400 YP_001564834.1 CDS Daci_3818 NC_010002.1 4200163 4200924 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rle:pRL120302 putative xanthine dehydrogenase YagT iron-sulfur binding subunit; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(4200163..4200924) Delftia acidovorans SPH-1 5749401 YP_001564835.1 CDS Daci_3819 NC_010002.1 4201054 4206579 R SMART: AAA ATPase; KEGG: pmy:Pmen_3386 hypothetical protein; ATPase AAA complement(4201054..4206579) Delftia acidovorans SPH-1 5749402 YP_001564836.1 CDS Daci_3820 NC_010002.1 4206776 4208851 R PFAM: band 7 protein; KEGG: pmy:Pmen_3387 hypothetical protein; hypothetical protein complement(4206776..4208851) Delftia acidovorans SPH-1 5749403 YP_001564837.1 CDS Daci_3821 NC_010002.1 4208950 4209618 R KEGG: sde:Sde_3478 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; ubiquinone biosynthesis hydroxylase UbiH/UbiF/VisC/COQ6 complement(4208950..4209618) Delftia acidovorans SPH-1 5749404 YP_001564838.1 CDS Daci_3822 NC_010002.1 4209693 4210403 R PFAM: PspA/IM30 family protein; KEGG: pfl:PFL_1112 PspA/IM30 family protein; phage shock protein A complement(4209693..4210403) Delftia acidovorans SPH-1 5749405 YP_001564839.1 CDS Daci_3823 NC_010002.1 4210445 4211113 R KEGG: pmy:Pmen_3390 hypothetical protein; hypothetical protein complement(4210445..4211113) Delftia acidovorans SPH-1 5749406 YP_001564840.1 CDS Daci_3824 NC_010002.1 4211368 4214001 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; Cache domain protein; KEGG: vfi:VF0094 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 4211368..4214001 Delftia acidovorans SPH-1 5749407 YP_001564841.1 CDS Daci_3825 NC_010002.1 4214159 4215166 D PFAM: diacylglycerol kinase catalytic region; KEGG: aav:Aave_3490 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit 4214159..4215166 Delftia acidovorans SPH-1 5749408 YP_001564842.1 CDS Daci_3826 NC_010002.1 4215190 4216005 D PFAM: metallophosphoesterase; KEGG: aav:Aave_3489 metallophosphoesterase; metallophosphoesterase 4215190..4216005 Delftia acidovorans SPH-1 5749409 YP_001564843.1 CDS Daci_3827 NC_010002.1 4216191 4216559 D PFAM: response regulator receiver; KEGG: aav:Aave_3992 response regulator receiver protein; response regulator receiver protein 4216191..4216559 Delftia acidovorans SPH-1 5749410 YP_001564844.1 CDS Daci_3828 NC_010002.1 4216605 4217783 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_3993 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase complement(4216605..4217783) Delftia acidovorans SPH-1 5749411 YP_001564845.1 CDS Daci_3829 NC_010002.1 4217784 4218398 R PFAM: CheB methylesterase; KEGG: ajs:Ajs_0649 CheB methylesterase; CheB methylesterase complement(4217784..4218398) Delftia acidovorans SPH-1 5749412 YP_001564846.1 CDS Daci_3830 NC_010002.1 4218398 4219237 R PFAM: MCP methyltransferase CheR-type; KEGG: ajs:Ajs_0648 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase complement(4218398..4219237) Delftia acidovorans SPH-1 5749413 YP_001564847.1 CDS Daci_3831 NC_010002.1 4219251 4222784 R PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: aav:Aave_3996 multi-sensor hybrid histidine kinase; GAF sensor hybrid histidine kinase complement(4219251..4222784) Delftia acidovorans SPH-1 5749414 YP_001564848.1 CDS Daci_3832 NC_010002.1 4223002 4223391 D KEGG: rme:Rmet_4756 hypothetical protein; hypothetical protein 4223002..4223391 Delftia acidovorans SPH-1 5749415 YP_001564849.1 CDS Daci_3833 NC_010002.1 4223498 4223905 D hypothetical protein 4223498..4223905 Delftia acidovorans SPH-1 5749416 YP_001564850.1 CDS Daci_3834 NC_010002.1 4223952 4225739 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_0160 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4223952..4225739) Delftia acidovorans SPH-1 5749417 YP_001564851.1 CDS Daci_3835 NC_010002.1 4225781 4226617 R KEGG: spn:SP_1772 cell wall surface anchor family protein; hypothetical protein complement(4225781..4226617) Delftia acidovorans SPH-1 5749418 YP_001564852.1 CDS Daci_3836 NC_010002.1 4226841 4227779 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_0702 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4226841..4227779) Delftia acidovorans SPH-1 5749419 YP_001564853.1 CDS Daci_3837 NC_010002.1 4228393 4228875 R PFAM: protein of unknown function DUF796; KEGG: aav:Aave_1465 protein of unknown function DUF796; hypothetical protein complement(4228393..4228875) Delftia acidovorans SPH-1 5749420 YP_001564854.1 CDS Daci_3838 NC_010002.1 4229490 4231553 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_1466 serine/threonine protein kinase; serine/threonine protein kinase 4229490..4231553 Delftia acidovorans SPH-1 5749421 YP_001564855.1 CDS Daci_3839 NC_010002.1 4231563 4232351 D KEGG: aav:Aave_1466 serine/threonine protein kinase; hypothetical protein 4231563..4232351 Delftia acidovorans SPH-1 5749422 YP_001564856.1 CDS Daci_3840 NC_010002.1 4232354 4232848 D KEGG: aav:Aave_1467 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4232354..4232848 Delftia acidovorans SPH-1 5749423 YP_001564857.1 CDS Daci_3841 NC_010002.1 4232891 4234936 D TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: aav:Aave_1468 FHA domain containing protein; FHA domain-containing protein 4232891..4234936 Delftia acidovorans SPH-1 5749424 YP_001564858.1 CDS Daci_3842 NC_010002.1 4234933 4235721 D PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aav:Aave_1469 protein serine/threonine phosphatase; protein serine/threonine phosphatase 4234933..4235721 Delftia acidovorans SPH-1 5749425 YP_001564859.1 CDS Daci_3843 NC_010002.1 4235741 4236340 D KEGG: aav:Aave_1470 lipoprotein, putative; putative lipoprotein 4235741..4236340 Delftia acidovorans SPH-1 5749426 YP_001564860.1 CDS Daci_3844 NC_010002.1 4236358 4237692 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: aav:Aave_1471 protein of unknown function DUF876; type VI secretion protein 4236358..4237692 Delftia acidovorans SPH-1 5749427 YP_001564861.1 CDS Daci_3845 NC_010002.1 4237714 4239045 D TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_1472 OmpA/MotB domain protein; hypothetical protein 4237714..4239045 Delftia acidovorans SPH-1 5749428 YP_001564862.1 CDS Daci_3846 NC_010002.1 4239050 4242706 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: aav:Aave_1473 ImcF domain protein; type VI secretion protein IcmF 4239050..4242706 Delftia acidovorans SPH-1 5749429 YP_001564863.1 CDS Daci_3847 NC_010002.1 4242688 4243392 D KEGG: aav:Aave_1474 hypothetical protein; hypothetical protein 4242688..4243392 Delftia acidovorans SPH-1 5749430 YP_001564864.1 CDS Daci_3848 NC_010002.1 4243450 4244487 D TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: aav:Aave_1475 ImpA domain protein; ImpA family type VI secretion-associated protein 4243450..4244487 Delftia acidovorans SPH-1 5749431 YP_001564865.1 CDS Daci_3849 NC_010002.1 4244484 4244906 D KEGG: aav:Aave_3097 hypothetical protein; hypothetical protein 4244484..4244906 Delftia acidovorans SPH-1 5749432 YP_001564866.1 CDS Daci_3850 NC_010002.1 4245030 4245572 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: aav:Aave_1476 uncharacterized conserved protein UCP028301; type VI secretion protein 4245030..4245572 Delftia acidovorans SPH-1 5749433 YP_001564867.1 CDS Daci_3851 NC_010002.1 4245601 4247094 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: aav:Aave_1477 protein of unknown function DUF877; EvpB family type VI secretion protein 4245601..4247094 Delftia acidovorans SPH-1 5749434 YP_001564868.1 CDS Daci_3852 NC_010002.1 4247099 4247596 D KEGG: aav:Aave_1071 hypothetical protein; hypothetical protein 4247099..4247596 Delftia acidovorans SPH-1 5749435 YP_001564869.1 CDS Daci_3853 NC_010002.1 4247670 4248578 D KEGG: aav:Aave_1107 hypothetical protein; hypothetical protein 4247670..4248578 Delftia acidovorans SPH-1 5749436 YP_001564870.1 CDS Daci_3854 NC_010002.1 4248655 4249026 D KEGG: pfl:PFL_5498 putative cytoplasmic protein; putative cytoplasmic protein 4248655..4249026 Delftia acidovorans SPH-1 5749437 YP_001564871.1 CDS Daci_3855 NC_010002.1 4249035 4249595 D KEGG: pae:PA2724 hypothetical protein; hypothetical protein 4249035..4249595 Delftia acidovorans SPH-1 5749438 YP_001564872.1 CDS Daci_3856 NC_010002.1 4249644 4250453 D PFAM: virulence protein SciE type; KEGG: aav:Aave_1478 virulence protein, SciE type; virulence protein SciE type 4249644..4250453 Delftia acidovorans SPH-1 5749439 YP_001564873.1 CDS Daci_3857 NC_010002.1 4250465 4250911 D KEGG: aav:Aave_0193 hypothetical protein; hypothetical protein 4250465..4250911 Delftia acidovorans SPH-1 5749440 YP_001564874.1 CDS Daci_3858 NC_010002.1 4250923 4251477 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: aav:Aave_1479 protein of unknown function DUF1316; type VI secretion system lysozyme-like protein 4250923..4251477 Delftia acidovorans SPH-1 5749441 YP_001564875.1 CDS Daci_3859 NC_010002.1 4251501 4253375 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: aav:Aave_1480 protein of unknown function DUF879; type VI secretion protein 4251501..4253375 Delftia acidovorans SPH-1 5749442 YP_001564876.1 CDS Daci_3860 NC_010002.1 4253462 4254562 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: aav:Aave_1481 protein of unknown function DUF1305; type VI secretion protein 4253462..4254562 Delftia acidovorans SPH-1 5749443 YP_001564877.1 CDS Daci_3861 NC_010002.1 4254603 4255436 D KEGG: aav:Aave_0973 hypothetical protein; hypothetical protein 4254603..4255436 Delftia acidovorans SPH-1 5749444 YP_001564878.1 CDS Daci_3862 NC_010002.1 4255472 4256077 D KEGG: aav:Aave_0972 hypothetical protein; hypothetical protein 4255472..4256077 Delftia acidovorans SPH-1 5749445 YP_001564879.1 CDS Daci_3863 NC_010002.1 4256082 4256645 D KEGG: aav:Aave_0972 hypothetical protein; hypothetical protein 4256082..4256645 Delftia acidovorans SPH-1 5749446 YP_001564880.1 CDS Daci_3864 NC_010002.1 4256651 4259437 D KEGG: aav:Aave_1482 ATPase AAA-2 domain protein; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 4256651..4259437 Delftia acidovorans SPH-1 5749447 YP_001564881.1 CDS Daci_3865 NC_010002.1 4259434 4261725 D PFAM: peptidase S41; KEGG: rrs:RoseRS_3207 peptidase S41; peptidase S41 4259434..4261725 Delftia acidovorans SPH-1 5749448 YP_001564882.1 CDS Daci_3866 NC_010002.1 4261762 4262721 D KEGG: aav:Aave_3422 hypothetical protein; hypothetical protein 4261762..4262721 Delftia acidovorans SPH-1 5749449 YP_001564883.1 CDS Daci_3867 NC_010002.1 4262724 4263881 D KEGG: aav:Aave_3423 hypothetical protein; hypothetical protein 4262724..4263881 Delftia acidovorans SPH-1 5749450 YP_001564884.1 CDS Daci_3868 NC_010002.1 4263992 4266184 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2127 rhs element Vgr protein; ImpA family type VI secretion-associated protein 4263992..4266184 Delftia acidovorans SPH-1 5749451 YP_001564885.1 CDS Daci_3869 NC_010002.1 4266195 4267511 D KEGG: aav:Aave_2128 hypothetical protein; hypothetical protein 4266195..4267511 Delftia acidovorans SPH-1 5749452 YP_001564886.1 CDS Daci_3870 NC_010002.1 4267504 4267863 D KEGG: aav:Aave_2129 hypothetical protein; hypothetical protein 4267504..4267863 Delftia acidovorans SPH-1 5749453 YP_001564887.1 CDS Daci_3871 NC_010002.1 4267870 4268868 D KEGG: aav:Aave_2130 hypothetical protein; hypothetical protein 4267870..4268868 Delftia acidovorans SPH-1 5749454 YP_001564888.1 CDS Daci_3872 NC_010002.1 4268875 4269345 D hypothetical protein 4268875..4269345 Delftia acidovorans SPH-1 5749455 YP_001564889.1 CDS Daci_3873 NC_010002.1 4269359 4270423 D KEGG: aav:Aave_2133 hypothetical protein; hypothetical protein 4269359..4270423 Delftia acidovorans SPH-1 5749456 YP_001564890.1 CDS Daci_3874 NC_010002.1 4270598 4271143 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: aav:Aave_2740 YD repeat protein; YD repeat-containing protein 4270598..4271143 Delftia acidovorans SPH-1 5749457 YP_001564891.1 CDS Daci_3875 NC_010002.1 4271238 4271477 R hypothetical protein complement(4271238..4271477) Delftia acidovorans SPH-1 5749458 YP_001564892.1 CDS Daci_3876 NC_010002.1 4271618 4271944 D KEGG: aav:Aave_2132 hypothetical protein; hypothetical protein 4271618..4271944 Delftia acidovorans SPH-1 5749459 YP_001564893.1 CDS Daci_3877 NC_010002.1 4272088 4272555 D hypothetical protein 4272088..4272555 Delftia acidovorans SPH-1 5749460 YP_001564894.1 CDS Daci_3878 NC_010002.1 4272556 4273113 D KEGG: aav:Aave_2740 YD repeat protein; hypothetical protein 4272556..4273113 Delftia acidovorans SPH-1 5749461 YP_001564895.1 CDS Daci_3879 NC_010002.1 4273124 4273702 D hypothetical protein 4273124..4273702 Delftia acidovorans SPH-1 5749462 YP_001564896.1 CDS Daci_3880 NC_010002.1 4273744 4274181 D KEGG: aav:Aave_2741 hypothetical protein; hypothetical protein 4273744..4274181 Delftia acidovorans SPH-1 5749463 YP_001564897.1 CDS Daci_3881 NC_010002.1 4274932 4275645 D KEGG: mms:mma_1666 hypothetical protein; hypothetical protein 4274932..4275645 Delftia acidovorans SPH-1 5749464 YP_001564898.1 CDS Daci_3882 NC_010002.1 4275686 4276351 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0154 molybdenum ABC-transporter, permease protein (ModB)-like; binding-protein-dependent transport system inner membrane protein complement(4275686..4276351) Delftia acidovorans SPH-1 5749465 YP_001564899.1 CDS Daci_3883 NC_010002.1 4276387 4277127 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: azo:azo3846 putative molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(4276387..4277127) Delftia acidovorans SPH-1 5749466 YP_001564900.1 CDS Daci_3884 NC_010002.1 4277322 4278050 R KEGG: rpb:RPB_3526 hypothetical protein; hypothetical protein complement(4277322..4278050) Delftia acidovorans SPH-1 5749467 YP_001564901.1 CDS Daci_3885 NC_010002.1 4278246 4280162 R PFAM: AMP-dependent synthetase and ligase; KEGG: pae:PA3860 acyl-CoA synthase; AMP-dependent synthetase/ligase complement(4278246..4280162) Delftia acidovorans SPH-1 5749468 YP_001564902.1 CDS Daci_3886 NC_010002.1 4280167 4281222 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3733 uncharacterized protein UPF0065; hypothetical protein complement(4280167..4281222) Delftia acidovorans SPH-1 5749469 YP_001564903.1 CDS Daci_3887 NC_010002.1 4281307 4282257 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3740 transcriptional regulator, LysR family; LysR family transcriptional regulator 4281307..4282257 Delftia acidovorans SPH-1 5749470 YP_001564904.1 CDS Daci_3888 NC_010002.1 4282313 4282894 D PFAM: regulatory protein TetR; KEGG: psb:Psyr_2933 regulatory protein, TetR; TetR family transcriptional regulator 4282313..4282894 Delftia acidovorans SPH-1 5749471 YP_001564905.1 CDS Daci_3889 NC_010002.1 4283009 4284109 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psb:Psyr_2934 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 4283009..4284109 Delftia acidovorans SPH-1 5749472 YP_001564906.1 CDS Daci_3890 NC_010002.1 4284190 4284822 D KEGG: bpd:BURPS668_A0697 hypothetical protein; hypothetical protein 4284190..4284822 Delftia acidovorans SPH-1 5749473 YP_001564907.1 CDS Daci_3891 NC_010002.1 4284860 4285444 D PFAM: flavin reductase domain protein FMN-binding; KEGG: bur:Bcep18194_A4508 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 4284860..4285444 Delftia acidovorans SPH-1 5749474 YP_001564908.1 CDS Daci_3892 NC_010002.1 4285462 4286316 D KEGG: aav:Aave_2747 zinc metalloproteinase Mpr protein; zinc metalloproteinase Mpr protein 4285462..4286316 Delftia acidovorans SPH-1 5749475 YP_001564909.1 CDS Daci_3893 NC_010002.1 4286383 4286880 R PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein; OsmC family protein complement(4286383..4286880) Delftia acidovorans SPH-1 5749476 YP_001564910.1 CDS Daci_3894 NC_010002.1 4286979 4287356 R KEGG: hch:HCH_03995 hypothetical protein; hypothetical protein complement(4286979..4287356) Delftia acidovorans SPH-1 5749477 YP_001564911.1 CDS Daci_3895 NC_010002.1 4287439 4288890 R PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC3001 MFS transporter; major facilitator transporter complement(4287439..4288890) Delftia acidovorans SPH-1 5749478 YP_001564912.1 CDS Daci_3896 NC_010002.1 4288963 4290261 R hypothetical protein complement(4288963..4290261) Delftia acidovorans SPH-1 5749479 YP_001564913.1 CDS Daci_3897 NC_010002.1 4290258 4292702 R hypothetical protein complement(4290258..4292702) Delftia acidovorans SPH-1 5749480 YP_001564914.1 CDS Daci_3898 NC_010002.1 4292768 4294006 R hypothetical protein complement(4292768..4294006) Delftia acidovorans SPH-1 5749481 YP_001564915.1 CDS Daci_3899 NC_010002.1 4294494 4295435 D PFAM: restriction endonuclease; KEGG: aav:Aave_1379 restriction endonuclease; restriction endonuclease 4294494..4295435 Delftia acidovorans SPH-1 5749482 YP_001564916.1 CDS Daci_3900 NC_010002.1 4295821 4296624 D KEGG: pst:PSPTO_4754 hypothetical protein; hypothetical protein 4295821..4296624 Delftia acidovorans SPH-1 5749483 YP_001564917.1 CDS Daci_3901 NC_010002.1 4297375 4297773 R PFAM: protein of unknown function DUF1232; KEGG: bbr:BB1021 hypothetical protein; hypothetical protein complement(4297375..4297773) Delftia acidovorans SPH-1 5749484 YP_001564918.1 CDS Daci_3902 NC_010002.1 4298346 4299278 D KEGG: aav:Aave_3264 hypothetical protein; hypothetical protein 4298346..4299278 Delftia acidovorans SPH-1 5749485 YP_001564919.1 CDS Daci_3903 NC_010002.1 4299272 4299781 D KEGG: aav:Aave_1403 hypothetical protein; hypothetical protein 4299272..4299781 Delftia acidovorans SPH-1 5749486 YP_001564920.1 CDS Daci_3904 NC_010002.1 4299930 4300499 D KEGG: aav:Aave_3265 hypothetical protein; hypothetical protein 4299930..4300499 Delftia acidovorans SPH-1 5749487 YP_001564921.1 CDS Daci_3905 NC_010002.1 4300918 4301106 R hypothetical protein complement(4300918..4301106) Delftia acidovorans SPH-1 5749488 YP_001564922.1 CDS Daci_3906 NC_010002.1 4301126 4301314 D KEGG: aav:Aave_3265 hypothetical protein; hypothetical protein 4301126..4301314 Delftia acidovorans SPH-1 5749489 YP_001564923.1 CDS Daci_3907 NC_010002.1 4301652 4301936 D KEGG: aav:Aave_3265 hypothetical protein; hypothetical protein 4301652..4301936 Delftia acidovorans SPH-1 5749490 YP_001564924.1 CDS Daci_3908 NC_010002.1 4301978 4303477 R KEGG: aav:Aave_4010 hypothetical protein; hypothetical protein complement(4301978..4303477) Delftia acidovorans SPH-1 5749491 YP_001564925.1 CDS Daci_3909 NC_010002.1 4303738 4304772 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mpt:Mpe_A0968 putative transcription regulator transcription regulator protein; LacI family transcriptional regulator complement(4303738..4304772) Delftia acidovorans SPH-1 5749492 YP_001564926.1 CDS Daci_3910 NC_010002.1 4304942 4305940 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 4304942..4305940 Delftia acidovorans SPH-1 5749493 YP_001564927.1 CDS Daci_3911 NC_010002.1 4305937 4306818 D PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_4270 2-dehydro-3-deoxyglucarate aldolase; 2-dehydro-3-deoxyglucarate aldolase 4305937..4306818 Delftia acidovorans SPH-1 5749494 YP_001564928.1 CDS Daci_3912 NC_010002.1 4306815 4308542 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 4306815..4308542 Delftia acidovorans SPH-1 5749495 YP_001564929.1 CDS Daci_3913 NC_010002.1 4309299 4311068 D TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: oan:Oant_3482 YidE/YbjL duplication; YidE/YbjL domain-containing protein 4309299..4311068 Delftia acidovorans SPH-1 5749496 YP_001564930.1 CDS Daci_3914 NC_010002.1 4311133 4312728 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 4311133..4312728 Delftia acidovorans SPH-1 5749497 YP_001564931.1 CDS Daci_3915 NC_010002.1 4312770 4313720 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0614 hypothetical protein; hypothetical protein complement(4312770..4313720) Delftia acidovorans SPH-1 5749498 YP_001564932.1 CDS Daci_3916 NC_010002.1 4313796 4314698 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0615 probable transcription regulator protein; LysR family transcriptional regulator 4313796..4314698 Delftia acidovorans SPH-1 5749499 YP_001564933.1 CDS Daci_3917 NC_010002.1 4314728 4316098 R KEGG: reu:Reut_B5656 hypothetical protein; hypothetical protein complement(4314728..4316098) Delftia acidovorans SPH-1 5749500 YP_001564934.1 CDS Daci_3918 NC_010002.1 4316095 4319211 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(4316095..4319211) Delftia acidovorans SPH-1 5749501 YP_001564935.1 CDS Daci_3919 NC_010002.1 4319211 4320332 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4319211..4320332) Delftia acidovorans SPH-1 5749502 YP_001564936.1 CDS Daci_3920 NC_010002.1 4320435 4320851 R KEGG: rme:Rmet_5683 hypothetical protein; hypothetical protein complement(4320435..4320851) Delftia acidovorans SPH-1 5749503 YP_001564937.1 CDS Daci_3921 NC_010002.1 4321127 4322029 D PFAM: nitroreductase; regulatory protein LysR; KEGG: rfr:Rfer_3637 nitroreductase; nitroreductase 4321127..4322029 Delftia acidovorans SPH-1 5749504 YP_001564938.1 CDS Daci_3922 NC_010002.1 4322182 4323093 D PFAM: protein of unknown function UPF0187; KEGG: rme:Rmet_5346 protein of unknown function UPF0187; hypothetical protein 4322182..4323093 Delftia acidovorans SPH-1 5749505 YP_001564939.1 CDS Daci_3923 NC_010002.1 4323165 4323374 D KEGG: sbl:Sbal_0847 hypothetical protein; hypothetical protein 4323165..4323374 Delftia acidovorans SPH-1 5749506 YP_001564940.1 CDS Daci_3924 NC_010002.1 4323392 4324372 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_B3090 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein complement(4323392..4324372) Delftia acidovorans SPH-1 5749507 YP_001564941.1 CDS Daci_3925 NC_010002.1 4324375 4325271 R PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B3091 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(4324375..4325271) Delftia acidovorans SPH-1 5749508 YP_001564942.1 CDS Daci_3926 NC_010002.1 4325311 4326366 R PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_B3092 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein complement(4325311..4326366) Delftia acidovorans SPH-1 5749509 YP_001564943.1 CDS Daci_3927 NC_010002.1 4326509 4327135 D PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B3093 transcriptional regulator, TetR family; TetR family transcriptional regulator 4326509..4327135 Delftia acidovorans SPH-1 5749510 YP_001564944.1 CDS Daci_3928 NC_010002.1 4327140 4328240 R KEGG: pfl:PFL_3184 acyl-CoA dehydrogenase, putative; acyl-CoA dehydrogenase complement(4327140..4328240) Delftia acidovorans SPH-1 5749511 YP_001564945.1 CDS Daci_3929 NC_010002.1 4328338 4329669 R PFAM: cytochrome c class I; KEGG: spe:Spro_2490 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase complement(4328338..4329669) Delftia acidovorans SPH-1 5749512 YP_001564946.1 CDS Daci_3930 NC_010002.1 4329687 4331987 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: spe:Spro_2491 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(4329687..4331987) Delftia acidovorans SPH-1 5749513 YP_001564947.1 CDS Daci_3931 NC_010002.1 4331984 4332571 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: spe:Spro_2492 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(4331984..4332571) Delftia acidovorans SPH-1 5749514 YP_001564948.1 CDS Daci_3932 NC_010002.1 4332752 4333003 R hypothetical protein complement(4332752..4333003) Delftia acidovorans SPH-1 5749515 YP_001564949.1 CDS Daci_3933 NC_010002.1 4333199 4333555 R KEGG: aav:Aave_3957 hypothetical protein; hypothetical protein complement(4333199..4333555) Delftia acidovorans SPH-1 5749516 YP_001564950.1 CDS Daci_3934 NC_010002.1 4333991 4334266 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4333991..4334266 Delftia acidovorans SPH-1 5749517 YP_001564951.1 CDS Daci_3935 NC_010002.1 4334499 4335314 D PFAM: Hpt domain protein; KEGG: bam:Bamb_5151 periplasmic sensor hybrid histidine kinase; Hpt domain-containing protein 4334499..4335314 Delftia acidovorans SPH-1 5749518 YP_001564952.1 CDS Daci_3936 NC_010002.1 4335326 4336021 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bpd:BURPS668_A0187 regulatory protein, LuxR:response regulator receiver; two component LuxR family transcriptional regulator complement(4335326..4336021) Delftia acidovorans SPH-1 5749519 YP_001564953.1 CDS Daci_3937 NC_010002.1 4336085 4339015 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: bpd:BURPS668_A0180 response regulator/sensor histidine kinase; Hpt sensor hybrid histidine kinase complement(4336085..4339015) Delftia acidovorans SPH-1 5749520 YP_001564954.1 CDS Daci_3938 NC_010002.1 4339148 4339804 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pae:PA4080 probable response regulator; two component LuxR family transcriptional regulator complement(4339148..4339804) Delftia acidovorans SPH-1 5749521 YP_001564955.1 CDS Daci_3939 NC_010002.1 4340111 4340587 D KEGG: aav:Aave_2791 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 4340111..4340587 Delftia acidovorans SPH-1 5749522 YP_001564956.1 CDS Daci_3940 NC_010002.1 4340675 4341199 R PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2055 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(4340675..4341199) Delftia acidovorans SPH-1 5749523 YP_001564957.1 CDS Daci_3941 NC_010002.1 4341439 4342065 D PFAM: ChaC family protein; KEGG: ajs:Ajs_2056 ChaC family protein; ChaC family protein 4341439..4342065 Delftia acidovorans SPH-1 5749524 YP_001564958.1 CDS Daci_3942 NC_010002.1 4342201 4342839 D PFAM: superoxide dismutase copper/zinc binding; KEGG: pol:Bpro_3554 superoxide dismutase; copper/zinc binding superoxide dismutase 4342201..4342839 Delftia acidovorans SPH-1 5749525 YP_001564959.1 CDS Daci_3943 NC_010002.1 4342851 4343423 R KEGG: vei:Veis_2563 hypothetical protein; hypothetical protein complement(4342851..4343423) Delftia acidovorans SPH-1 5749526 YP_001564960.1 CDS Daci_3944 NC_010002.1 4343476 4344123 D KEGG: aav:Aave_2803 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 4343476..4344123 Delftia acidovorans SPH-1 5749527 YP_001564961.1 CDS Daci_3945 NC_010002.1 4344161 4345264 R PFAM: Auxin Efflux Carrier; KEGG: aav:Aave_2804 auxin efflux carrier; auxin efflux carrier complement(4344161..4345264) Delftia acidovorans SPH-1 5749528 YP_001564962.1 CDS Daci_3946 NC_010002.1 4345350 4346267 D PFAM: Pirin domain protein; KEGG: bte:BTH_I1747 pirin family protein; pirin domain-containing protein 4345350..4346267 Delftia acidovorans SPH-1 5749529 YP_001564963.1 CDS Daci_3947 NC_010002.1 4346550 4347611 D PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; integrase family protein 4346550..4347611 Delftia acidovorans SPH-1 5749530 YP_001564964.1 CDS Daci_3948 NC_010002.1 4347646 4349838 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_2033 TonB-dependent receptor; TonB-dependent receptor complement(4347646..4349838) Delftia acidovorans SPH-1 5749531 YP_001564965.1 CDS Daci_3949 NC_010002.1 4350079 4350534 R KEGG: ajs:Ajs_2032 hypothetical protein; hypothetical protein complement(4350079..4350534) Delftia acidovorans SPH-1 5749532 YP_001564966.1 CDS Daci_3950 NC_010002.1 4350657 4350965 R KEGG: aav:Aave_2810 hypothetical protein; hypothetical protein complement(4350657..4350965) Delftia acidovorans SPH-1 5749533 YP_001564967.1 CDS Daci_3951 NC_010002.1 4351017 4351514 R KEGG: aav:Aave_2813 putative ferric uptake regulator, Fur family; ferric uptake regulator family protein complement(4351017..4351514) Delftia acidovorans SPH-1 5749534 YP_001564968.1 CDS Daci_3952 NC_010002.1 4351629 4352165 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: aav:Aave_2814 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase complement(4351629..4352165) Delftia acidovorans SPH-1 5749535 YP_001564969.1 CDS Daci_3953 NC_010002.1 4352312 4353010 D PFAM: regulatory protein TetR; KEGG: pna:Pnap_1129 transcriptional regulator, TetR family; TetR family transcriptional regulator 4352312..4353010 Delftia acidovorans SPH-1 5749536 YP_001564970.1 CDS Daci_3954 NC_010002.1 4353007 4354248 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vei:Veis_2348 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4353007..4354248 Delftia acidovorans SPH-1 5749537 YP_001564971.1 CDS Daci_3955 NC_010002.1 4354251 4357478 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_1667 acriflavin resistance protein; acriflavin resistance protein 4354251..4357478 Delftia acidovorans SPH-1 5749538 YP_001564972.1 CDS Daci_3956 NC_010002.1 4357522 4358232 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_2816 methyltransferase type 11; protein-L-isoaspartate(D-aspartate) O-methyltransferase 4357522..4358232 Delftia acidovorans SPH-1 5749539 YP_001564973.1 CDS Daci_3957 NC_010002.1 4358310 4358657 D SMART: Rhodanese domain protein; KEGG: ajs:Ajs_2027 rhodanese domain protein; rhodanese domain-containing protein 4358310..4358657 Delftia acidovorans SPH-1 5749540 YP_001564974.1 CDS Daci_3958 NC_010002.1 4358748 4360223 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_2818 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4358748..4360223 Delftia acidovorans SPH-1 5749541 YP_001564975.1 CDS Daci_3959 NC_010002.1 4360594 4361271 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ent:Ent638_1861 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4360594..4361271 Delftia acidovorans SPH-1 5749542 YP_001564976.1 CDS Daci_3960 NC_010002.1 4361274 4362695 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ent:Ent638_1862 integral membrane sensor signal transduction histidine kinase; histidine kinase 4361274..4362695 Delftia acidovorans SPH-1 5749543 YP_001564977.1 CDS Daci_3961 NC_010002.1 4362787 4363047 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE2111 hypothetical protein; prevent-host-death family protein 4362787..4363047 Delftia acidovorans SPH-1 5749544 YP_001564978.1 CDS Daci_3962 NC_010002.1 4363059 4363472 D PFAM: PilT protein domain protein; KEGG: neu:NE2112 PIN (PilT N terminus) domain; PilT domain-containing protein 4363059..4363472 Delftia acidovorans SPH-1 5749545 YP_001564979.1 CDS Daci_3963 NC_010002.1 4363530 4364849 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: aav:Aave_2820 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase complement(4363530..4364849) Delftia acidovorans SPH-1 5749546 YP_001564980.1 CDS Daci_3964 NC_010002.1 4364865 4366253 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: ajs:Ajs_2021 phosphomannomutase; phosphomannomutase complement(4364865..4366253) Delftia acidovorans SPH-1 5749547 YP_001564981.1 CDS prpE NC_010002.1 4366404 4368290 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(4366404..4368290) Delftia acidovorans SPH-1 5749548 YP_001564982.1 CDS Daci_3966 NC_010002.1 4368406 4369212 R KEGG: bch:Bcen2424_3201 porin, opacity type; opacity protein and related surface antigens-like protein complement(4368406..4369212) Delftia acidovorans SPH-1 5749549 YP_001564983.1 CDS Daci_3967 NC_010002.1 4369267 4369869 R PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_2015 isochorismatase hydrolase; isochorismatase hydrolase complement(4369267..4369869) Delftia acidovorans SPH-1 5749550 YP_001564984.1 CDS Daci_3968 NC_010002.1 4370065 4370700 D PFAM: NLP/P60 protein; KEGG: aav:Aave_2830 NLP/P60 protein; NLP/P60 protein 4370065..4370700 Delftia acidovorans SPH-1 5749551 YP_001564985.1 CDS Daci_3969 NC_010002.1 4370863 4371120 D KEGG: aav:Aave_2831 transglycosylase-associated protein; transglycosylase-associated protein 4370863..4371120 Delftia acidovorans SPH-1 5749552 YP_001564986.1 CDS Daci_3970 NC_010002.1 4371197 4371883 D KEGG: aav:Aave_2832 hypothetical protein; hypothetical protein 4371197..4371883 Delftia acidovorans SPH-1 5749553 YP_001564987.1 CDS Daci_3971 NC_010002.1 4371891 4372730 R PFAM: Glutathione S-transferase domain; KEGG: pfo:Pfl_2223 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(4371891..4372730) Delftia acidovorans SPH-1 5749554 YP_001564988.1 CDS Daci_3972 NC_010002.1 4372860 4373348 D PFAM: protein of unknown function DUF55; KEGG: ajs:Ajs_2092 protein of unknown function DUF55; hypothetical protein 4372860..4373348 Delftia acidovorans SPH-1 5749555 YP_001564989.1 CDS Daci_3973 NC_010002.1 4373536 4374561 D KEGG: oan:Oant_0479 hypothetical protein; hypothetical protein 4373536..4374561 Delftia acidovorans SPH-1 5749556 YP_001564990.1 CDS Daci_3974 NC_010002.1 4374562 4375863 R PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1721 major facilitator superfamily MFS_1; major facilitator transporter complement(4374562..4375863) Delftia acidovorans SPH-1 5749557 YP_001564991.1 CDS Daci_3975 NC_010002.1 4375961 4376680 D KEGG: bxe:Bxe_C1278 hypothetical protein; hypothetical protein 4375961..4376680 Delftia acidovorans SPH-1 5749558 YP_001564992.1 CDS Daci_3976 NC_010002.1 4376869 4377486 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bur:Bcep18194_C7469 lysine exporter family protein (LysE/YggA); lysine exporter protein LysE/YggA complement(4376869..4377486) Delftia acidovorans SPH-1 5749559 YP_001564993.1 CDS Daci_3977 NC_010002.1 4377552 4378481 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5693 transcriptional regulator, LysR family; LysR family transcriptional regulator 4377552..4378481 Delftia acidovorans SPH-1 5749560 YP_001564994.1 CDS Daci_3978 NC_010002.1 4378623 4380467 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aav:Aave_2464 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(4378623..4380467) Delftia acidovorans SPH-1 5749561 YP_001564995.1 CDS Daci_3979 NC_010002.1 4380483 4382174 R KEGG: aav:Aave_2463 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(4380483..4382174) Delftia acidovorans SPH-1 5749562 YP_001564996.1 CDS aceE NC_010002.1 4382194 4384911 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(4382194..4384911) Delftia acidovorans SPH-1 5749563 YP_001564997.1 CDS Daci_3981 NC_010002.1 4385232 4387805 D KEGG: ajs:Ajs_2126 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 4385232..4387805 Delftia acidovorans SPH-1 5749564 YP_001564998.1 CDS Daci_3982 NC_010002.1 4387802 4388452 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2127 response regulator receiver protein; two component LuxR family transcriptional regulator 4387802..4388452 Delftia acidovorans SPH-1 5749565 YP_001564999.1 CDS Daci_3983 NC_010002.1 4388537 4389391 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 4388537..4389391 Delftia acidovorans SPH-1 5749566 YP_001565000.1 CDS Daci_3984 NC_010002.1 4389467 4391515 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: aav:Aave_2458 oligopeptidase A; oligopeptidase A 4389467..4391515 Delftia acidovorans SPH-1 5749567 YP_001565001.1 CDS Daci_3985 NC_010002.1 4391627 4392427 D PFAM: glutaredoxin; KEGG: aav:Aave_2457 glutaredoxin; glutaredoxin 4391627..4392427 Delftia acidovorans SPH-1 5749568 YP_001565002.1 CDS Daci_3986 NC_010002.1 4392459 4392842 D hypothetical protein 4392459..4392842 Delftia acidovorans SPH-1 5749569 YP_001565003.1 CDS Daci_3987 NC_010002.1 4392864 4393556 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(4392864..4393556) Delftia acidovorans SPH-1 5749570 YP_001565004.1 CDS Daci_3988 NC_010002.1 4393591 4394637 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 4393591..4394637 Delftia acidovorans SPH-1 5749571 YP_001565005.1 CDS Daci_3989 NC_010002.1 4394791 4395162 R KEGG: ajs:Ajs_2133 hypothetical protein; hypothetical protein complement(4394791..4395162) Delftia acidovorans SPH-1 5749572 YP_001565006.1 CDS Daci_3990 NC_010002.1 4395165 4395584 R KEGG: aav:Aave_2453 hypothetical protein; hypothetical protein complement(4395165..4395584) Delftia acidovorans SPH-1 5749573 YP_001565007.1 CDS Daci_3991 NC_010002.1 4395593 4395904 R PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB; hypothetical protein complement(4395593..4395904) Delftia acidovorans SPH-1 5749574 YP_001565008.1 CDS Daci_3992 NC_010002.1 4396107 4397207 R PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase; 2-hydroxyglutarate dehydrogenase complement(4396107..4397207) Delftia acidovorans SPH-1 5749575 YP_001565009.1 CDS Daci_3993 NC_010002.1 4397820 4398536 R KEGG: vei:Veis_2379 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(4397820..4398536) Delftia acidovorans SPH-1 5749580 YP_001565010.1 CDS Daci_3994 NC_010002.1 4398547 4398885 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: ajs:Ajs_2139 ferredoxin, 2Fe-2S type, ISC system; 2Fe-2S type ferredoxin complement(4398547..4398885) Delftia acidovorans SPH-1 5749581 YP_001565011.1 CDS hscA NC_010002.1 4398911 4400779 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(4398911..4400779) Delftia acidovorans SPH-1 5749582 YP_001565012.1 CDS Daci_3996 NC_010002.1 4400864 4401382 R TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: ajs:Ajs_2141 co-chaperone Hsc20; co-chaperone Hsc20 complement(4400864..4401382) Delftia acidovorans SPH-1 5749583 YP_001565013.1 CDS Daci_3997 NC_010002.1 4401500 4401823 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: ajs:Ajs_2142 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(4401500..4401823) Delftia acidovorans SPH-1 5749584 YP_001565014.1 CDS Daci_3998 NC_010002.1 4401825 4402223 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: ajs:Ajs_2143 FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold IscU complement(4401825..4402223) Delftia acidovorans SPH-1 5749585 YP_001565015.1 CDS Daci_3999 NC_010002.1 4402267 4403487 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vei:Veis_2373 cysteine desulfurase IscS; cysteine desulfurase IscS complement(4402267..4403487) Delftia acidovorans SPH-1 5749586 YP_001565016.1 CDS Daci_4000 NC_010002.1 4403622 4404158 R TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_2145 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(4403622..4404158) Delftia acidovorans SPH-1 5749587 YP_001565017.1 CDS Daci_4001 NC_010002.1 4404384 4406522 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(4404384..4406522) Delftia acidovorans SPH-1 5749588 YP_001565018.1 CDS Daci_4002 NC_010002.1 4406600 4407796 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4406600..4407796 Delftia acidovorans SPH-1 5749589 YP_001565019.1 CDS Daci_4003 NC_010002.1 4407990 4408970 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_2153 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4407990..4408970 Delftia acidovorans SPH-1 5749590 YP_001565020.1 CDS Daci_4004 NC_010002.1 4409303 4411765 D KEGG: pap:PSPA7_4658 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4409303..4411765 Delftia acidovorans SPH-1 5749591 YP_001565021.1 CDS Daci_4005 NC_010002.1 4411779 4414274 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ajs:Ajs_2243 radical SAM N-terminal domain protein; radical SAM domain-containing protein complement(4411779..4414274) Delftia acidovorans SPH-1 5749592 YP_001565022.1 CDS Daci_4006 NC_010002.1 4414350 4415342 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_1077 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4414350..4415342) Delftia acidovorans SPH-1 5749593 YP_001565023.1 CDS Daci_4007 NC_010002.1 4415410 4415649 R hypothetical protein complement(4415410..4415649) Delftia acidovorans SPH-1 5749594 YP_001565024.1 CDS Daci_4008 NC_010002.1 4415646 4417382 R PFAM: monooxygenase FAD-binding; KEGG: bxe:Bxe_A2727 putative 3-(3-hydroxy-phenyl)propionate hydroxylase (MhpA); monooxygenase FAD-binding complement(4415646..4417382) Delftia acidovorans SPH-1 5749595 YP_001565025.1 CDS Daci_4009 NC_010002.1 4417484 4418350 R PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1220 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(4417484..4418350) Delftia acidovorans SPH-1 5749596 YP_001565026.1 CDS Daci_4010 NC_010002.1 4418575 4418745 R hypothetical protein complement(4418575..4418745) Delftia acidovorans SPH-1 5749597 YP_001565027.1 CDS Daci_4011 NC_010002.1 4418885 4419541 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ajs:Ajs_2244 protein of unknown function UPF0029; hypothetical protein 4418885..4419541 Delftia acidovorans SPH-1 5749598 YP_001565028.1 CDS Daci_4012 NC_010002.1 4419563 4420741 R KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(4419563..4420741) Delftia acidovorans SPH-1 5749599 YP_001565029.1 CDS Daci_4013 NC_010002.1 4420752 4421738 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4524 uncharacterized protein UPF0065; hypothetical protein complement(4420752..4421738) Delftia acidovorans SPH-1 5749600 YP_001565030.1 CDS Daci_4014 NC_010002.1 4421870 4422820 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0607 transcriptional regulator, LysR-family; LysR family transcriptional regulator 4421870..4422820 Delftia acidovorans SPH-1 5749601 YP_001565031.1 CDS Daci_4015 NC_010002.1 4423372 4423635 R hypothetical protein complement(4423372..4423635) Delftia acidovorans SPH-1 5749602 YP_001565032.1 CDS Daci_4016 NC_010002.1 4423676 4424890 R KEGG: afw:Anae109_1986 extracellular HAF; hypothetical protein complement(4423676..4424890) Delftia acidovorans SPH-1 5749603 YP_001565033.1 CDS Daci_4017 NC_010002.1 4425440 4425679 D hypothetical protein 4425440..4425679 Delftia acidovorans SPH-1 5749604 YP_001565034.1 CDS Daci_4018 NC_010002.1 4425917 4427341 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4425917..4427341 Delftia acidovorans SPH-1 5749605 YP_001565035.1 CDS Daci_4019 NC_010002.1 4427366 4429186 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1831 ABC efflux transporter, permease/ATP-binding protein; ABC transporter complement(4427366..4429186) Delftia acidovorans SPH-1 5749606 YP_001565036.1 CDS Daci_4020 NC_010002.1 4429396 4431318 D PFAM: K potassium transporter; KEGG: rfr:Rfer_2539 K+ potassium transporter; K potassium transporter 4429396..4431318 Delftia acidovorans SPH-1 5749607 YP_001565037.1 CDS Daci_4021 NC_010002.1 4431332 4432006 R KEGG: azo:azo2926 conserved hypothetical secreted protein; hypothetical protein complement(4431332..4432006) Delftia acidovorans SPH-1 5749608 YP_001565038.1 CDS Daci_4022 NC_010002.1 4432328 4432939 D PFAM: Chromate transporter; KEGG: ajs:Ajs_2259 chromate transporter; chromate transporter 4432328..4432939 Delftia acidovorans SPH-1 5749609 YP_001565039.1 CDS Daci_4023 NC_010002.1 4432936 4433544 D PFAM: Chromate transporter; KEGG: ajs:Ajs_2260 chromate transporter; chromate transporter 4432936..4433544 Delftia acidovorans SPH-1 5749610 YP_001565040.1 CDS Daci_4024 NC_010002.1 4433591 4434571 D PFAM: aldo/keto reductase; KEGG: aav:Aave_3016 aldo/keto reductase; aldo/keto reductase 4433591..4434571 Delftia acidovorans SPH-1 5749611 YP_001565041.1 CDS Daci_4025 NC_010002.1 4434616 4435470 R PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_2262 silent information regulator protein Sir2; silent information regulator protein Sir2 complement(4434616..4435470) Delftia acidovorans SPH-1 5749612 YP_001565042.1 CDS Daci_4026 NC_010002.1 4435470 4436174 R PFAM: regulatory protein TetR; KEGG: rso:RS03880 putative transcription regulator protein; TetR family transcriptional regulator complement(4435470..4436174) Delftia acidovorans SPH-1 5749613 YP_001565043.1 CDS Daci_4027 NC_010002.1 4436344 4436847 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bbr:BB4023 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 4436344..4436847 Delftia acidovorans SPH-1 5749614 YP_001565044.1 CDS Daci_4028 NC_010002.1 4436918 4437340 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 4436918..4437340 Delftia acidovorans SPH-1 5749615 YP_001565045.1 CDS Daci_4029 NC_010002.1 4437419 4437805 D KEGG: vco:VC0395_0589 hypothetical protein; hypothetical protein 4437419..4437805 Delftia acidovorans SPH-1 5749616 YP_001565046.1 CDS Daci_4030 NC_010002.1 4437814 4438290 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: swi:Swit_1108 activator of HSP90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 4437814..4438290 Delftia acidovorans SPH-1 5749617 YP_001565047.1 CDS Daci_4031 NC_010002.1 4438316 4438717 D PFAM: protein of unknown function DUF1428; KEGG: rpe:RPE_4844 protein of unknown function DUF1428; hypothetical protein 4438316..4438717 Delftia acidovorans SPH-1 5749618 YP_001565048.1 CDS Daci_4032 NC_010002.1 4438714 4439505 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: aav:Aave_3018 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase complement(4438714..4439505) Delftia acidovorans SPH-1 5749619 YP_001565049.1 CDS Daci_4033 NC_010002.1 4439711 4440946 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 4439711..4440946 Delftia acidovorans SPH-1 5749620 YP_001565050.1 CDS Daci_4034 NC_010002.1 4440971 4441681 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2270 ABC transporter related; ABC transporter-like protein complement(4440971..4441681) Delftia acidovorans SPH-1 5749621 YP_001565051.1 CDS Daci_4035 NC_010002.1 4441719 4442363 D PFAM: lipolytic protein G-D-S-L family; KEGG: ajs:Ajs_2271 lipolytic enzyme, G-D-S-L family; arylesterase 4441719..4442363 Delftia acidovorans SPH-1 5749622 YP_001565052.1 CDS Daci_4036 NC_010002.1 4442633 4443442 R KEGG: vei:Veis_3410 integral membrane protein; integral membrane protein complement(4442633..4443442) Delftia acidovorans SPH-1 5749623 YP_001565053.1 CDS Daci_4037 NC_010002.1 4443555 4445306 R KEGG: ajs:Ajs_3582 alkaline phosphatase; alkaline phosphatase complement(4443555..4445306) Delftia acidovorans SPH-1 5749624 YP_001565054.1 CDS Daci_4038 NC_010002.1 4445405 4446673 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ajs:Ajs_2273 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; Cys/Met metabolism pyridoxal-phosphate-dependent protein complement(4445405..4446673) Delftia acidovorans SPH-1 5749625 YP_001565055.1 CDS Daci_4039 NC_010002.1 4446734 4447204 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pol:Bpro_0874 transport-associated; transport-associated protein complement(4446734..4447204) Delftia acidovorans SPH-1 5749626 YP_001565056.1 CDS Daci_4040 NC_010002.1 4447340 4449100 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ajs:Ajs_2275 sulphate transporter; sulfate transporter 4447340..4449100 Delftia acidovorans SPH-1 5749627 YP_001565057.1 CDS Daci_4041 NC_010002.1 4449066 4449914 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3024 diguanylate cyclase; diguanylate cyclase 4449066..4449914 Delftia acidovorans SPH-1 5749628 YP_001565058.1 CDS Daci_4042 NC_010002.1 4449886 4450770 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aav:Aave_3025 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 4449886..4450770 Delftia acidovorans SPH-1 5749629 YP_001565059.1 CDS Daci_4043 NC_010002.1 4450836 4451627 D SMART: Rhodanese domain protein; KEGG: aav:Aave_3026 rhodanese domain protein; rhodanese domain-containing protein 4450836..4451627 Delftia acidovorans SPH-1 5749630 YP_001565060.1 CDS Daci_4044 NC_010002.1 4451624 4452238 R PFAM: flavodoxin/nitric oxide synthase; KEGG: vei:Veis_4981 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(4451624..4452238) Delftia acidovorans SPH-1 5749631 YP_001565061.1 CDS Daci_4045 NC_010002.1 4452339 4452746 R PFAM: DoxX family protein; KEGG: ajs:Ajs_1986 DoxX family protein; DoxX family protein complement(4452339..4452746) Delftia acidovorans SPH-1 5749632 YP_001565062.1 CDS Daci_4046 NC_010002.1 4452791 4453492 R PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ajs:Ajs_1985 pirin domain protein domain protein; pirin domain-containing protein complement(4452791..4453492) Delftia acidovorans SPH-1 5749633 YP_001565063.1 CDS Daci_4047 NC_010002.1 4453626 4454564 D PFAM: regulatory protein LysR; helix-turn-helix Fis-type; LysR substrate-binding; KEGG: aav:Aave_3030 transcriptional regulator, LysR family; LysR family transcriptional regulator 4453626..4454564 Delftia acidovorans SPH-1 5749634 YP_001565064.1 CDS Daci_4048 NC_010002.1 4454603 4455826 D PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_3031 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4454603..4455826 Delftia acidovorans SPH-1 5749635 YP_001565065.1 CDS Daci_4049 NC_010002.1 4455882 4456820 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; glutamate--tRNA ligase 4455882..4456820 Delftia acidovorans SPH-1 5749636 YP_001565066.1 CDS trmB NC_010002.1 4456861 4457640 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 4456861..4457640 Delftia acidovorans SPH-1 5749637 YP_001565067.1 CDS Daci_4051 NC_010002.1 4457627 4458697 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3034 diguanylate cyclase; diguanylate cyclase 4457627..4458697 Delftia acidovorans SPH-1 5749638 YP_001565068.1 CDS Daci_4052 NC_010002.1 4458720 4459970 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_2880 GGDEF; diguanylate cyclase complement(4458720..4459970) Delftia acidovorans SPH-1 5749639 YP_001565069.1 CDS Daci_4053 NC_010002.1 4459980 4461143 R KEGG: dar:Daro_2881 periplasmic sugar-binding protein, putative; periplasmic sugar-binding protein complement(4459980..4461143) Delftia acidovorans SPH-1 5749640 YP_001565070.1 CDS alaS NC_010002.1 4461160 4463784 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(4461160..4463784) Delftia acidovorans SPH-1 5749641 YP_001565071.1 CDS Daci_4055 NC_010002.1 4464220 4464579 D hypothetical protein 4464220..4464579 Delftia acidovorans SPH-1 5749642 YP_001565072.1 CDS Daci_4056 NC_010002.1 4464637 4465974 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_2224 major facilitator superfamily MFS_1; major facilitator transporter complement(4464637..4465974) Delftia acidovorans SPH-1 5749643 YP_001565073.1 CDS Daci_4057 NC_010002.1 4466273 4467319 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: aav:Aave_2223 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II 4466273..4467319 Delftia acidovorans SPH-1 5749644 YP_001565074.1 CDS Daci_4058 NC_010002.1 4467455 4469392 D KEGG: ajs:Ajs_2776 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 4467455..4469392 Delftia acidovorans SPH-1 5749645 YP_001565075.1 CDS Daci_4059 NC_010002.1 4469385 4470017 D TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: aav:Aave_2221 cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III 4469385..4470017 Delftia acidovorans SPH-1 5749646 YP_001565076.1 CDS Daci_4060 NC_010002.1 4470018 4470458 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: aav:Aave_2220 cytochrome c oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 4470018..4470458 Delftia acidovorans SPH-1 5749647 YP_001565077.1 CDS Daci_4061 NC_010002.1 4470530 4471243 D PFAM: Surfeit locus 1 family protein; KEGG: aav:Aave_2219 surfeit locus 1 family protein; surfeit locus 1 family protein 4470530..4471243 Delftia acidovorans SPH-1 5749648 YP_001565078.1 CDS Daci_4062 NC_010002.1 4471357 4472658 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1739 two-component sensor histidine kinase; histidine kinase 4471357..4472658 Delftia acidovorans SPH-1 5749649 YP_001565079.1 CDS Daci_4063 NC_010002.1 4472688 4473224 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: mpt:Mpe_A1738 two-component response regulator; two component Fis family transcriptional regulator 4472688..4473224 Delftia acidovorans SPH-1 5749650 YP_001565080.1 CDS Daci_4064 NC_010002.1 4473305 4474210 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(4473305..4474210) Delftia acidovorans SPH-1 5749651 YP_001565081.1 CDS Daci_4065 NC_010002.1 4474207 4475727 R PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly; cytochrome oxidase assembly complement(4474207..4475727) Delftia acidovorans SPH-1 5749652 YP_001565082.1 CDS Daci_4066 NC_010002.1 4476241 4476636 D hypothetical protein 4476241..4476636 Delftia acidovorans SPH-1 5749653 YP_001565083.1 CDS Daci_4067 NC_010002.1 4476770 4476970 D hypothetical protein 4476770..4476970 Delftia acidovorans SPH-1 5749654 YP_001565084.1 CDS Daci_4068 NC_010002.1 4476967 4477233 D hypothetical protein 4476967..4477233 Delftia acidovorans SPH-1 5749655 YP_001565085.1 CDS Daci_4069 NC_010002.1 4477385 4477666 D hypothetical protein 4477385..4477666 Delftia acidovorans SPH-1 5749656 YP_001565086.1 CDS Daci_4070 NC_010002.1 4477705 4478493 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pae:PA2650 hypothetical protein; type 11 methyltransferase complement(4477705..4478493) Delftia acidovorans SPH-1 5749657 YP_001565087.1 CDS Daci_4071 NC_010002.1 4479518 4479805 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: ajs:Ajs_1144 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(4479518..4479805) Delftia acidovorans SPH-1 5749658 YP_001565088.1 CDS Daci_4072 NC_010002.1 4479940 4480191 D PFAM: protein of unknown function DUF333; KEGG: sbl:Sbal_4226 protein of unknown function DUF333; hypothetical protein 4479940..4480191 Delftia acidovorans SPH-1 5749659 YP_001565089.1 CDS Daci_4073 NC_010002.1 4481513 4482052 R KEGG: pol:Bpro_5208 protein of unknown function DUF159; hypothetical protein complement(4481513..4482052) Delftia acidovorans SPH-1 5749660 YP_001565090.1 CDS Daci_4074 NC_010002.1 4482605 4482991 D hypothetical protein 4482605..4482991 Delftia acidovorans SPH-1 5749661 YP_001565091.1 CDS Daci_4075 NC_010002.1 4483010 4483285 R KEGG: aav:Aave_1637 hypothetical protein; hypothetical protein complement(4483010..4483285) Delftia acidovorans SPH-1 5749662 YP_001565092.1 CDS Daci_4076 NC_010002.1 4483282 4483650 R KEGG: aav:Aave_1790 hypothetical protein; hypothetical protein complement(4483282..4483650) Delftia acidovorans SPH-1 5749663 YP_001565093.1 CDS Daci_4077 NC_010002.1 4483653 4484129 R PFAM: protein of unknown function DUF847; KEGG: bvi:Bcep1808_1188 protein of unknown function DUF847; hypothetical protein complement(4483653..4484129) Delftia acidovorans SPH-1 5749664 YP_001565094.1 CDS Daci_4078 NC_010002.1 4484421 4484819 R hypothetical protein complement(4484421..4484819) Delftia acidovorans SPH-1 5749665 YP_001565095.1 CDS Daci_4079 NC_010002.1 4484889 4485596 R hypothetical protein complement(4484889..4485596) Delftia acidovorans SPH-1 5749666 YP_001565096.1 CDS Daci_4080 NC_010002.1 4486261 4489635 R KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein; hypothetical protein complement(4486261..4489635) Delftia acidovorans SPH-1 5749667 YP_001565097.1 CDS Daci_4081 NC_010002.1 4489983 4490393 R PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60; NLP/P60 protein complement(4489983..4490393) Delftia acidovorans SPH-1 5749668 YP_001565098.1 CDS Daci_4082 NC_010002.1 4490390 4491319 R PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein; hypothetical protein complement(4490390..4491319) Delftia acidovorans SPH-1 5749669 YP_001565099.1 CDS Daci_4083 NC_010002.1 4491322 4491909 R PFAM: conserved hypothetical protein; KEGG: rsq:Rsph17025_1086 hypothetical protein; hypothetical protein complement(4491322..4491909) Delftia acidovorans SPH-1 5749670 YP_001565100.1 CDS Daci_4084 NC_010002.1 4491906 4495661 R TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: esa:ESA_01039 hypothetical protein; lambda family phage tail tape measure protein complement(4491906..4495661) Delftia acidovorans SPH-1 5749671 YP_001565101.1 CDS Daci_4085 NC_010002.1 4496232 4496546 R PFAM: Protein of unknown function DUF1799 phage-related; KEGG: aav:Aave_1781 hypothetical protein; hypothetical protein complement(4496232..4496546) Delftia acidovorans SPH-1 5749672 YP_001565102.1 CDS Daci_4086 NC_010002.1 4496546 4497019 R PFAM: Domain of unknown function DUF1789; KEGG: aav:Aave_1626 hypothetical protein; hypothetical protein complement(4496546..4497019) Delftia acidovorans SPH-1 5749673 YP_001565103.1 CDS Daci_4087 NC_010002.1 4497133 4497786 R PFAM: tail protein 3; KEGG: psb:Psyr_2783 hypothetical protein; tail protein 3 complement(4497133..4497786) Delftia acidovorans SPH-1 5749674 YP_001565104.1 CDS Daci_4088 NC_010002.1 4497877 4498302 R KEGG: mlo:mlr8015 hypothetical protein; hypothetical protein complement(4497877..4498302) Delftia acidovorans SPH-1 5749675 YP_001565105.1 CDS Daci_4089 NC_010002.1 4498299 4498745 R KEGG: xau:Xaut_3707 hypothetical protein; hypothetical protein complement(4498299..4498745) Delftia acidovorans SPH-1 5749676 YP_001565106.1 CDS Daci_4090 NC_010002.1 4498745 4499806 R KEGG: mes:Meso_1223 hypothetical protein; hypothetical protein complement(4498745..4499806) Delftia acidovorans SPH-1 5749677 YP_001565107.1 CDS Daci_4091 NC_010002.1 4499809 4500198 R KEGG: xau:Xaut_3713 hypothetical protein; hypothetical protein complement(4499809..4500198) Delftia acidovorans SPH-1 5749678 YP_001565108.1 CDS Daci_4092 NC_010002.1 4500199 4500744 R PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bvi:Bcep1808_4543 HNH endonuclease; pathogenesis-like transcriptional factor and ERF protein complement(4500199..4500744) Delftia acidovorans SPH-1 5749679 YP_001565109.1 CDS Daci_4093 NC_010002.1 4500849 4501346 R KEGG: mlo:mlr8011 hypothetical protein; hypothetical protein complement(4500849..4501346) Delftia acidovorans SPH-1 5749680 YP_001565110.1 CDS Daci_4094 NC_010002.1 4501349 4501582 R hypothetical protein complement(4501349..4501582) Delftia acidovorans SPH-1 5749681 YP_001565111.1 CDS Daci_4095 NC_010002.1 4501668 4502648 R KEGG: gbe:GbCGDNIH1_1579 hypothetical protein; hypothetical protein complement(4501668..4502648) Delftia acidovorans SPH-1 5749682 YP_001565112.1 CDS Daci_4096 NC_010002.1 4502652 4503131 R hypothetical protein complement(4502652..4503131) Delftia acidovorans SPH-1 5749683 YP_001565113.1 CDS Daci_4097 NC_010002.1 4503147 4504283 R KEGG: mes:Meso_1215 hypothetical protein; hypothetical protein complement(4503147..4504283) Delftia acidovorans SPH-1 5749684 YP_001565114.1 CDS Daci_4098 NC_010002.1 4504280 4505638 R TIGRFAM: phage-associated protein, HI1409 family; PFAM: conserved hypothetical protein; KEGG: mlo:mlr8004 hypothetical protein; phage-associated protein complement(4504280..4505638) Delftia acidovorans SPH-1 5749685 YP_001565115.1 CDS Daci_4099 NC_010002.1 4505638 4506882 R TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit; KEGG: par:Psyc_1001 phage terminase, large subunit, PBSX family; PBSX family phage terminase large subunit complement(4505638..4506882) Delftia acidovorans SPH-1 5749686 YP_001565116.1 CDS Daci_4100 NC_010002.1 4506863 4507495 R PFAM: Terminase small subunit; KEGG: sit:TM1040_0800 terminase small subunit; terminase small subunit complement(4506863..4507495) Delftia acidovorans SPH-1 5749687 YP_001565117.1 CDS Daci_4101 NC_010002.1 4507992 4508450 R KEGG: aav:Aave_1764 hypothetical protein; hypothetical protein complement(4507992..4508450) Delftia acidovorans SPH-1 5749688 YP_001565118.1 CDS Daci_4102 NC_010002.1 4508467 4509042 R PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein; lambda NinG family protein complement(4508467..4509042) Delftia acidovorans SPH-1 5749689 YP_001565119.1 CDS Daci_4103 NC_010002.1 4509368 4509706 R KEGG: sit:TM1040_1689 hypothetical protein; hypothetical protein complement(4509368..4509706) Delftia acidovorans SPH-1 5749690 YP_001565120.1 CDS Daci_4104 NC_010002.1 4509699 4509896 R hypothetical protein complement(4509699..4509896) Delftia acidovorans SPH-1 5749691 YP_001565121.1 CDS Daci_4105 NC_010002.1 4509893 4510141 R hypothetical protein complement(4509893..4510141) Delftia acidovorans SPH-1 5749692 YP_001565122.1 CDS Daci_4106 NC_010002.1 4510317 4510676 R hypothetical protein complement(4510317..4510676) Delftia acidovorans SPH-1 5749693 YP_001565123.1 CDS Daci_4107 NC_010002.1 4510673 4511182 R hypothetical protein complement(4510673..4511182) Delftia acidovorans SPH-1 5749694 YP_001565124.1 CDS Daci_4108 NC_010002.1 4511179 4511481 R hypothetical protein complement(4511179..4511481) Delftia acidovorans SPH-1 5749695 YP_001565125.1 CDS Daci_4109 NC_010002.1 4511780 4512463 R KEGG: bbr:BB1686 hypothetical protein; hypothetical protein complement(4511780..4512463) Delftia acidovorans SPH-1 5749696 YP_001565126.1 CDS Daci_4110 NC_010002.1 4512519 4513883 R PFAM: DnaB domain protein helicase domain protein; KEGG: bvi:Bcep1808_1163 DnaB domain protein helicase, C-terminal domain protein; DnaB domain-containing protein complement(4512519..4513883) Delftia acidovorans SPH-1 5749697 YP_001565127.1 CDS Daci_4111 NC_010002.1 4513876 4514781 R KEGG: ajs:Ajs_0930 hypothetical protein; hypothetical protein complement(4513876..4514781) Delftia acidovorans SPH-1 5749698 YP_001565128.1 CDS Daci_4112 NC_010002.1 4516060 4516359 R hypothetical protein complement(4516060..4516359) Delftia acidovorans SPH-1 5749699 YP_001565129.1 CDS Daci_4113 NC_010002.1 4516397 4517047 D PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B; putative phage repressor 4516397..4517047 Delftia acidovorans SPH-1 5749700 YP_001565130.1 CDS Daci_4114 NC_010002.1 4517062 4517649 D hypothetical protein 4517062..4517649 Delftia acidovorans SPH-1 5749701 YP_001565131.1 CDS Daci_4115 NC_010002.1 4517670 4518101 D KEGG: bbr:BB1705 phage-related putative exported protein; hypothetical protein 4517670..4518101 Delftia acidovorans SPH-1 5749702 YP_001565132.1 CDS Daci_4116 NC_010002.1 4520302 4520643 D hypothetical protein 4520302..4520643 Delftia acidovorans SPH-1 5749703 YP_001565133.1 CDS Daci_4117 NC_010002.1 4520726 4520971 D hypothetical protein 4520726..4520971 Delftia acidovorans SPH-1 5749704 YP_001565134.1 CDS Daci_4118 NC_010002.1 4521015 4521236 D hypothetical protein 4521015..4521236 Delftia acidovorans SPH-1 5749705 YP_001565135.1 CDS Daci_4119 NC_010002.1 4521463 4521861 D hypothetical protein 4521463..4521861 Delftia acidovorans SPH-1 5749706 YP_001565136.1 CDS Daci_4120 NC_010002.1 4521858 4522151 D hypothetical protein 4521858..4522151 Delftia acidovorans SPH-1 5749707 YP_001565137.1 CDS Daci_4121 NC_010002.1 4522144 4522488 D hypothetical protein 4522144..4522488 Delftia acidovorans SPH-1 5749708 YP_001565138.1 CDS Daci_4122 NC_010002.1 4522807 4523184 D hypothetical protein 4522807..4523184 Delftia acidovorans SPH-1 5749709 YP_001565139.1 CDS Daci_4123 NC_010002.1 4523186 4523593 D hypothetical protein 4523186..4523593 Delftia acidovorans SPH-1 5749710 YP_001565140.1 CDS Daci_4124 NC_010002.1 4523590 4523784 D hypothetical protein 4523590..4523784 Delftia acidovorans SPH-1 5749711 YP_001565141.1 CDS Daci_4125 NC_010002.1 4524009 4524617 D PFAM: ERF family protein; KEGG: mms:mma_2226 hypothetical protein; ERF family protein 4524009..4524617 Delftia acidovorans SPH-1 5749712 YP_001565142.1 CDS Daci_4126 NC_010002.1 4524627 4524884 D hypothetical protein 4524627..4524884 Delftia acidovorans SPH-1 5749713 YP_001565143.1 CDS Daci_4127 NC_010002.1 4524893 4525384 D hypothetical protein 4524893..4525384 Delftia acidovorans SPH-1 5749714 YP_001565144.1 CDS Daci_4128 NC_010002.1 4525421 4525708 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pnu:Pnuc_0838 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4525421..4525708 Delftia acidovorans SPH-1 5749715 YP_001565145.1 CDS Daci_4129 NC_010002.1 4525741 4526130 D hypothetical protein 4525741..4526130 Delftia acidovorans SPH-1 5749716 YP_001565146.1 CDS Daci_4130 NC_010002.1 4526310 4527257 D hypothetical protein 4526310..4527257 Delftia acidovorans SPH-1 5749717 YP_001565147.1 CDS Daci_4131 NC_010002.1 4527260 4527739 D KEGG: xfa:XF1762 hypothetical protein; hypothetical protein 4527260..4527739 Delftia acidovorans SPH-1 5749718 YP_001565148.1 CDS Daci_4132 NC_010002.1 4527736 4528143 D PFAM: HNH endonuclease; KEGG: pde:Pden_3731 HNH endonuclease; HNH endonuclease 4527736..4528143 Delftia acidovorans SPH-1 5749719 YP_001565149.1 CDS Daci_4133 NC_010002.1 4528145 4528498 D hypothetical protein 4528145..4528498 Delftia acidovorans SPH-1 5749720 YP_001565150.1 CDS Daci_4134 NC_010002.1 4528579 4529028 D KEGG: pna:Pnap_4291 hypothetical protein; hypothetical protein 4528579..4529028 Delftia acidovorans SPH-1 5749721 YP_001565151.1 CDS Daci_4135 NC_010002.1 4529025 4529216 D hypothetical protein 4529025..4529216 Delftia acidovorans SPH-1 5749722 YP_001565152.1 CDS Daci_4136 NC_010002.1 4529218 4529472 D hypothetical protein 4529218..4529472 Delftia acidovorans SPH-1 5749723 YP_001565153.1 CDS Daci_4137 NC_010002.1 4529541 4529915 D PFAM: Prophage CP4-57 regulatory; KEGG: bte:BTH_I1915 prophage CP4-57 regulatory protein (AlpA) family; phage transcriptional regulator AlpA 4529541..4529915 Delftia acidovorans SPH-1 5749724 YP_001565154.1 CDS Daci_4138 NC_010002.1 4529912 4531123 R PFAM: integrase family protein; KEGG: bte:BTH_I1914 integrative genetic element Gsu32, integrase, putative; integrase family protein complement(4529912..4531123) Delftia acidovorans SPH-1 5749725 YP_001565155.1 CDS Daci_4139 NC_010002.1 4531718 4533646 D PFAM: integrase family protein; KEGG: eba:c1A49 integrase (int); integrase family protein 4531718..4533646 Delftia acidovorans SPH-1 5749727 YP_001565156.1 CDS Daci_4140 NC_010002.1 4534211 4534966 D KEGG: xcv:XCV2416 hypothetical protein; hypothetical protein 4534211..4534966 Delftia acidovorans SPH-1 5749728 YP_001565157.1 CDS Daci_4141 NC_010002.1 4535085 4535297 D PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA 4535085..4535297 Delftia acidovorans SPH-1 5749729 YP_001565158.1 CDS Daci_4142 NC_010002.1 4535340 4536215 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein; cobyrinic acid ac-diamide synthase 4535340..4536215 Delftia acidovorans SPH-1 5749730 YP_001565159.1 CDS Daci_4143 NC_010002.1 4536199 4536447 D KEGG: xcv:XCV2413 hypothetical protein; hypothetical protein 4536199..4536447 Delftia acidovorans SPH-1 5749731 YP_001565160.1 CDS Daci_4144 NC_010002.1 4536440 4538032 D KEGG: xcv:XCV2412 hypothetical protein; hypothetical protein 4536440..4538032 Delftia acidovorans SPH-1 5749732 YP_001565161.1 CDS Daci_4145 NC_010002.1 4538048 4538608 D KEGG: xfa:XF1782 hypothetical protein; hypothetical protein 4538048..4538608 Delftia acidovorans SPH-1 5749733 YP_001565162.1 CDS Daci_4146 NC_010002.1 4538612 4539856 D KEGG: xcv:XCV2410 hypothetical protein; hypothetical protein 4538612..4539856 Delftia acidovorans SPH-1 5749734 YP_001565163.1 CDS Daci_4147 NC_010002.1 4540174 4540974 D PFAM: Domain of unknown function DUF1845; KEGG: xcv:XCV2409 hypothetical protein; hypothetical protein 4540174..4540974 Delftia acidovorans SPH-1 5749735 YP_001565164.1 CDS Daci_4148 NC_010002.1 4540971 4541498 D KEGG: ajs:Ajs_1447 putative integrase regulator R protein; putative integrase regulator R protein 4540971..4541498 Delftia acidovorans SPH-1 5749736 YP_001565165.1 CDS Daci_4149 NC_010002.1 4541572 4542012 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 4541572..4542012 Delftia acidovorans SPH-1 5749737 YP_001565166.1 CDS Daci_4150 NC_010002.1 4542282 4544294 D decatenates replicating daughter chromosomes; DNA topoisomerase III 4542282..4544294 Delftia acidovorans SPH-1 5749738 YP_001565167.1 CDS Daci_4151 NC_010002.1 4544818 4545063 D KEGG: xcv:XCV2404 hypothetical protein; hypothetical protein 4544818..4545063 Delftia acidovorans SPH-1 5749739 YP_001565168.1 CDS Daci_4152 NC_010002.1 4545393 4545605 D KEGG: bxe:Bxe_A1220 hypothetical protein; hypothetical protein 4545393..4545605 Delftia acidovorans SPH-1 5749740 YP_001565169.1 CDS Daci_4153 NC_010002.1 4545627 4546019 D KEGG: xcv:XCV2402 hypothetical protein; hypothetical protein 4545627..4546019 Delftia acidovorans SPH-1 5749741 YP_001565170.1 CDS Daci_4154 NC_010002.1 4546232 4546969 D KEGG: ajs:Ajs_1439 hypothetical protein; hypothetical protein 4546232..4546969 Delftia acidovorans SPH-1 5749742 YP_001565171.1 CDS Daci_4155 NC_010002.1 4547064 4547342 D KEGG: ajs:Ajs_1303 hypothetical protein; hypothetical protein 4547064..4547342 Delftia acidovorans SPH-1 5749743 YP_001565172.1 CDS Daci_4156 NC_010002.1 4547623 4548435 D KEGG: ajs:Ajs_1437 hypothetical protein; hypothetical protein 4547623..4548435 Delftia acidovorans SPH-1 5749744 YP_001565173.1 CDS Daci_4157 NC_010002.1 4548814 4549728 D KEGG: xcv:XCV2395 hypothetical protein; hypothetical protein 4548814..4549728 Delftia acidovorans SPH-1 5749745 YP_001565174.1 CDS Daci_4158 NC_010002.1 4549879 4550706 D PFAM: protein of unknown function DUF932; KEGG: har:HEAR1987 hypothetical protein; hypothetical protein 4549879..4550706 Delftia acidovorans SPH-1 5749746 YP_001565175.1 CDS Daci_4159 NC_010002.1 4550802 4551500 D KEGG: ajs:Ajs_1293 hypothetical protein; hypothetical protein 4550802..4551500 Delftia acidovorans SPH-1 5749747 YP_001565176.1 CDS Daci_4160 NC_010002.1 4551595 4552002 D KEGG: har:HEAR1990 hypothetical protein; hypothetical protein 4551595..4552002 Delftia acidovorans SPH-1 5749748 YP_001565177.1 CDS Daci_4161 NC_010002.1 4552056 4553858 D PFAM: helicase domain protein; KEGG: rme:Rmet_2330 helicase-like protein; helicase domain-containing protein 4552056..4553858 Delftia acidovorans SPH-1 5749749 YP_001565178.1 CDS Daci_4162 NC_010002.1 4554031 4555833 D KEGG: xau:Xaut_3047 ATP-dependent endonuclease family protein; ATP-dependent endonuclease family protein 4554031..4555833 Delftia acidovorans SPH-1 5749750 YP_001565179.1 CDS Daci_4163 NC_010002.1 4555899 4557551 D PFAM: UvrD/REP helicase; KEGG: xau:Xaut_3048 UvrD/REP helicase; UvrD/REP helicase 4555899..4557551 Delftia acidovorans SPH-1 5749751 YP_001565180.1 CDS Daci_4164 NC_010002.1 4557694 4558272 D KEGG: ajs:Ajs_1279 putative secreted protein; hypothetical protein 4557694..4558272 Delftia acidovorans SPH-1 5749752 YP_001565181.1 CDS Daci_4165 NC_010002.1 4558269 4558910 D KEGG: bxe:Bxe_A1199 hypothetical protein; hypothetical protein 4558269..4558910 Delftia acidovorans SPH-1 5749753 YP_001565182.1 CDS Daci_4166 NC_010002.1 4558925 4559662 D KEGG: ajs:Ajs_1411 putative secreted protein; hypothetical protein 4558925..4559662 Delftia acidovorans SPH-1 5749754 YP_001565183.1 CDS Daci_4167 NC_010002.1 4559644 4560249 D PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A1197 hypothetical protein; lytic transglycosylase catalytic subunit 4559644..4560249 Delftia acidovorans SPH-1 5749755 YP_001565184.1 CDS Daci_4168 NC_010002.1 4560246 4560794 D KEGG: bxe:Bxe_A1196 hypothetical protein; hypothetical protein 4560246..4560794 Delftia acidovorans SPH-1 5749756 YP_001565185.1 CDS Daci_4169 NC_010002.1 4560799 4562982 D KEGG: ajs:Ajs_1274 hypothetical protein; hypothetical protein 4560799..4562982 Delftia acidovorans SPH-1 5749757 YP_001565186.1 CDS Daci_4170 NC_010002.1 4562979 4563740 D KEGG: pla:Plav_3415 hypothetical protein; hypothetical protein 4562979..4563740 Delftia acidovorans SPH-1 5749758 YP_001565187.1 CDS Daci_4171 NC_010002.1 4563839 4564222 D PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: har:HEAR2012 conserved hypothetical protein; putative signal peptide; hypothetical protein 4563839..4564222 Delftia acidovorans SPH-1 5749759 YP_001565188.1 CDS Daci_4172 NC_010002.1 4564219 4564452 D KEGG: bxe:Bxe_A1191 hypothetical protein; hypothetical protein 4564219..4564452 Delftia acidovorans SPH-1 5749760 YP_001565189.1 CDS Daci_4173 NC_010002.1 4564469 4564828 D KEGG: har:HEAR2014 hypothetical protein; hypothetical protein 4564469..4564828 Delftia acidovorans SPH-1 5749761 YP_001565190.1 CDS Daci_4174 NC_010002.1 4564842 4565252 D KEGG: bxe:Bxe_A1189 hypothetical protein; hypothetical protein 4564842..4565252 Delftia acidovorans SPH-1 5749762 YP_001565191.1 CDS Daci_4175 NC_010002.1 4565249 4565941 D KEGG: ajs:Ajs_1402 putative secreted protein; hypothetical protein 4565249..4565941 Delftia acidovorans SPH-1 5749763 YP_001565192.1 CDS Daci_4176 NC_010002.1 4565938 4566876 D KEGG: har:HEAR2017 conserved hypothetical protein; putative signal peptide; putative signal peptide 4565938..4566876 Delftia acidovorans SPH-1 5749764 YP_001565193.1 CDS Daci_4177 NC_010002.1 4566866 4568275 D KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein 4566866..4568275 Delftia acidovorans SPH-1 5749765 YP_001565194.1 CDS Daci_4178 NC_010002.1 4568256 4568705 D KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide; putative signal peptide 4568256..4568705 Delftia acidovorans SPH-1 5749766 YP_001565195.1 CDS Daci_4179 NC_010002.1 4568705 4571614 D KEGG: ajs:Ajs_1256 hypothetical protein; hypothetical protein 4568705..4571614 Delftia acidovorans SPH-1 5749767 YP_001565196.1 CDS Daci_4180 NC_010002.1 4571657 4572394 D KEGG: bxe:Bxe_A1183 hypothetical protein; hypothetical protein 4571657..4572394 Delftia acidovorans SPH-1 5749768 YP_001565197.1 CDS Daci_4181 NC_010002.1 4572573 4573067 D PFAM: DNA repair protein RadC; KEGG: ajs:Ajs_1396 DNA repair protein RadC; DNA repair protein RadC 4572573..4573067 Delftia acidovorans SPH-1 5749769 YP_001565198.1 CDS Daci_4182 NC_010002.1 4573232 4573678 D PFAM: protein of unknown function DUF1525; KEGG: har:HEAR2023 hypothetical protein; hypothetical protein 4573232..4573678 Delftia acidovorans SPH-1 5749770 YP_001565199.1 CDS Daci_4183 NC_010002.1 4573675 4574622 D PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein; hypothetical protein 4573675..4574622 Delftia acidovorans SPH-1 5749771 YP_001565200.1 CDS Daci_4184 NC_010002.1 4574633 4576039 D KEGG: rme:Rmet_2358 hypothetical protein; hypothetical protein 4574633..4576039 Delftia acidovorans SPH-1 5749772 YP_001565201.1 CDS Daci_4185 NC_010002.1 4576036 4576407 D KEGG: pla:Plav_3430 hypothetical protein; hypothetical protein 4576036..4576407 Delftia acidovorans SPH-1 5749773 YP_001565202.1 CDS Daci_4186 NC_010002.1 4576423 4577946 D KEGG: pla:Plav_3431 hypothetical protein; hypothetical protein 4576423..4577946 Delftia acidovorans SPH-1 5749774 YP_001565203.1 CDS Daci_4187 NC_010002.1 4577953 4578312 R KEGG: pla:Plav_3432 hypothetical protein; hypothetical protein complement(4577953..4578312) Delftia acidovorans SPH-1 5749775 YP_001565204.1 CDS Daci_4188 NC_010002.1 4578340 4578798 R KEGG: neu:NE0292 hypothetical protein; hypothetical protein complement(4578340..4578798) Delftia acidovorans SPH-1 5749776 YP_001565205.1 CDS Daci_4189 NC_010002.1 4578798 4579115 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: neu:NE0293 hypothetical protein; AbrB family transcriptional regulator complement(4578798..4579115) Delftia acidovorans SPH-1 5749777 YP_001565206.1 CDS Daci_4190 NC_010002.1 4579413 4581266 D PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein; relaxase 4579413..4581266 Delftia acidovorans SPH-1 5749778 YP_001565207.1 CDS Daci_4191 NC_010002.1 4581297 4584632 R PFAM: Cold-shock protein DNA-binding; KEGG: hpy:HP0453 hypothetical protein; DNA-binding cold-shock protein complement(4581297..4584632) Delftia acidovorans SPH-1 5749779 YP_001565208.1 CDS Daci_4192 NC_010002.1 4584629 4587271 R KEGG: hpy:HP0452 hypothetical protein; chromosome segregation ATPase-like protein complement(4584629..4587271) Delftia acidovorans SPH-1 5749780 YP_001565209.1 CDS Daci_4193 NC_010002.1 4588069 4588449 D hypothetical protein 4588069..4588449 Delftia acidovorans SPH-1 5749781 YP_001565210.1 CDS Daci_4194 NC_010002.1 4589202 4592582 R SMART: AAA ATPase; KEGG: pna:Pnap_4258 superfamily I DNA and RNA helicases and helicase subunits-like protein; ATPase AAA complement(4589202..4592582) Delftia acidovorans SPH-1 5749782 YP_001565211.1 CDS Daci_4195 NC_010002.1 4592579 4593922 R KEGG: pna:Pnap_4257 protein kinase; serine/threonine protein kinase complement(4592579..4593922) Delftia acidovorans SPH-1 5749783 YP_001565212.1 CDS Daci_4196 NC_010002.1 4593915 4594631 R KEGG: pna:Pnap_4256 hypothetical protein; hypothetical protein complement(4593915..4594631) Delftia acidovorans SPH-1 5749784 YP_001565213.1 CDS Daci_4197 NC_010002.1 4594628 4595116 R hypothetical protein complement(4594628..4595116) Delftia acidovorans SPH-1 5749785 YP_001565214.1 CDS Daci_4198 NC_010002.1 4595113 4596195 R KEGG: hpy:HP0986 hypothetical protein; hypothetical protein complement(4595113..4596195) Delftia acidovorans SPH-1 5749786 YP_001565215.1 CDS Daci_4199 NC_010002.1 4596873 4599557 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: hpj:jhp0061 hypothetical protein; cell division protein FtsK complement(4596873..4599557) Delftia acidovorans SPH-1 5749787 YP_001565216.1 CDS Daci_4200 NC_010002.1 4599545 4599823 R hypothetical protein complement(4599545..4599823) Delftia acidovorans SPH-1 5749788 YP_001565217.1 CDS Daci_4201 NC_010002.1 4600109 4601419 R KEGG: tfu:Tfu_1419 hypothetical protein; hypothetical protein complement(4600109..4601419) Delftia acidovorans SPH-1 5749789 YP_001565218.1 CDS Daci_4202 NC_010002.1 4601436 4601705 R KEGG: hpj:jhp0057 hypothetical protein; hypothetical protein complement(4601436..4601705) Delftia acidovorans SPH-1 5749790 YP_001565219.1 CDS Daci_4203 NC_010002.1 4601705 4602439 R PFAM: von Willebrand factor type A; KEGG: pna:Pnap_4255 von Willebrand factor, type A; von Willebrand factor type A complement(4601705..4602439) Delftia acidovorans SPH-1 5749791 YP_001565220.1 CDS Daci_4204 NC_010002.1 4602520 4605525 R PFAM: type III restriction protein res subunit; KEGG: aav:Aave_0162 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(4602520..4605525) Delftia acidovorans SPH-1 5749792 YP_001565221.1 CDS Daci_4205 NC_010002.1 4605537 4607522 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT0908 type III restriction system methylase; DNA methylase N-4/N-6 domain-containing protein complement(4605537..4607522) Delftia acidovorans SPH-1 5749793 YP_001565222.1 CDS Daci_4206 NC_010002.1 4607549 4608352 R KEGG: cte:CT0907 hypothetical protein; hypothetical protein complement(4607549..4608352) Delftia acidovorans SPH-1 5749794 YP_001565223.1 CDS Daci_4207 NC_010002.1 4608349 4611582 R PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_0157 helicase domain protein; helicase domain-containing protein complement(4608349..4611582) Delftia acidovorans SPH-1 5749795 YP_001565224.1 CDS Daci_4208 NC_010002.1 4611595 4612503 R KEGG: neu:NE2519 hypothetical protein; hypothetical protein complement(4611595..4612503) Delftia acidovorans SPH-1 5749796 YP_001565225.1 CDS Daci_4209 NC_010002.1 4612783 4613673 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pla:Plav_3462 transcriptional regulator, LysR family; LysR family transcriptional regulator 4612783..4613673 Delftia acidovorans SPH-1 5749797 YP_001565226.1 CDS Daci_4210 NC_010002.1 4613711 4614031 R PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2401 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4613711..4614031) Delftia acidovorans SPH-1 5749798 YP_001565227.1 CDS Daci_4211 NC_010002.1 4614138 4614779 D PFAM: LysR substrate-binding; KEGG: xfa:XF1719 hypothetical protein; LysR family transcriptional regulator 4614138..4614779 Delftia acidovorans SPH-1 5749799 YP_001565228.1 CDS Daci_4212 NC_010002.1 4615154 4615417 D KEGG: bur:Bcep18194_B2350 hypothetical protein; hypothetical protein 4615154..4615417 Delftia acidovorans SPH-1 5749800 YP_001565229.1 CDS Daci_4213 NC_010002.1 4615460 4616068 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1629 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor 4615460..4616068 Delftia acidovorans SPH-1 5749801 YP_001565230.1 CDS Daci_4214 NC_010002.1 4616065 4616592 D KEGG: bch:Bcen2424_4478 hypothetical protein; hypothetical protein 4616065..4616592 Delftia acidovorans SPH-1 5749802 YP_001565231.1 CDS Daci_4215 NC_010002.1 4616589 4617152 D KEGG: bxe:Bxe_B1627 putative membrane-associated protein; putative membrane-associated protein 4616589..4617152 Delftia acidovorans SPH-1 5749803 YP_001565232.1 CDS Daci_4216 NC_010002.1 4617219 4618583 D PFAM: Protein of unknown function DUF1800; KEGG: bxe:Bxe_B1626 hypothetical protein; hypothetical protein 4617219..4618583 Delftia acidovorans SPH-1 5749804 YP_001565233.1 CDS Daci_4217 NC_010002.1 4618589 4619812 D PFAM: protein of unknown function DUF1501; KEGG: bxe:Bxe_B1625 hypothetical protein; hypothetical protein 4618589..4619812 Delftia acidovorans SPH-1 5749805 YP_001565234.1 CDS Daci_4218 NC_010002.1 4619912 4620241 R KEGG: rso:RSc3291 hypothetical protein; hypothetical protein complement(4619912..4620241) Delftia acidovorans SPH-1 5749806 YP_001565235.1 CDS Daci_4219 NC_010002.1 4620951 4621934 R KEGG: sma:SAV3034 hypothetical protein; hypothetical protein complement(4620951..4621934) Delftia acidovorans SPH-1 5749807 YP_001565236.1 CDS Daci_4220 NC_010002.1 4621955 4622341 R KEGG: mmr:Mmar10_2551 hypothetical protein; hypothetical protein complement(4621955..4622341) Delftia acidovorans SPH-1 5749808 YP_001565237.1 CDS Daci_4221 NC_010002.1 4622382 4623527 D KEGG: aav:Aave_3037 hypothetical protein; hypothetical protein 4622382..4623527 Delftia acidovorans SPH-1 5749809 YP_001565238.1 CDS Daci_4222 NC_010002.1 4623548 4624375 D KEGG: bxe:Bxe_B0568 hypothetical protein; hypothetical protein 4623548..4624375 Delftia acidovorans SPH-1 5749810 YP_001565239.1 CDS Daci_4223 NC_010002.1 4625083 4625277 D hypothetical protein 4625083..4625277 Delftia acidovorans SPH-1 5749811 YP_001565240.1 CDS Daci_4224 NC_010002.1 4625316 4626026 D PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: rme:Rmet_2509 threonyl/alanyl tRNA synthetase, SAD; threonyl/alanyl tRNA synthetase SAD 4625316..4626026 Delftia acidovorans SPH-1 5749812 YP_001565241.1 CDS Daci_4225 NC_010002.1 4626056 4626346 R hypothetical protein complement(4626056..4626346) Delftia acidovorans SPH-1 5749813 YP_001565242.1 CDS Daci_4226 NC_010002.1 4626675 4627133 D TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: aav:Aave_2435 azurin; azurin 4626675..4627133 Delftia acidovorans SPH-1 5749814 YP_001565243.1 CDS Daci_4227 NC_010002.1 4627255 4627767 R hypothetical protein complement(4627255..4627767) Delftia acidovorans SPH-1 5749815 YP_001565244.1 CDS Daci_4228 NC_010002.1 4627754 4629091 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: vei:Veis_4935 protein of unknown function DUF21; hypothetical protein complement(4627754..4629091) Delftia acidovorans SPH-1 5749816 YP_001565245.1 CDS Daci_4229 NC_010002.1 4629271 4629633 R KEGG: ajs:Ajs_1665 hypothetical protein; hypothetical protein complement(4629271..4629633) Delftia acidovorans SPH-1 5749817 YP_001565246.1 CDS Daci_4230 NC_010002.1 4629767 4630273 D KEGG: har:HEAR0763 hypothetical protein; hypothetical protein 4629767..4630273 Delftia acidovorans SPH-1 5749818 YP_001565247.1 CDS Daci_4231 NC_010002.1 4630501 4631085 D PFAM: isochorismatase hydrolase; KEGG: bch:Bcen2424_4549 isochorismatase hydrolase; isochorismatase hydrolase 4630501..4631085 Delftia acidovorans SPH-1 5749819 YP_001565248.1 CDS Daci_4232 NC_010002.1 4631233 4632120 D KEGG: rpa:RPA1061 possible polyketide synthesis protein; polyketide biosynthesis O-methyltransferase-like protein 4631233..4632120 Delftia acidovorans SPH-1 5749820 YP_001565249.1 CDS Daci_4233 NC_010002.1 4632188 4632817 R PFAM: nitroreductase; KEGG: bte:BTH_II1923 nitroreductase family protein; nitroreductase complement(4632188..4632817) Delftia acidovorans SPH-1 5749821 YP_001565250.1 CDS Daci_4234 NC_010002.1 4632814 4633317 R PFAM: ferric-uptake regulator; KEGG: aav:Aave_4555 ferric uptake regulator, Fur family; ferric uptake regulator family protein complement(4632814..4633317) Delftia acidovorans SPH-1 5749822 YP_001565251.1 CDS Daci_4235 NC_010002.1 4633314 4633943 R KEGG: aav:Aave_3322 hypothetical protein; hypothetical protein complement(4633314..4633943) Delftia acidovorans SPH-1 5749823 YP_001565252.1 CDS Daci_4236 NC_010002.1 4634223 4635254 R PFAM: cytochrome c class I; KEGG: bur:Bcep18194_B0408 cytochrome c, class I; class I cytochrome c complement(4634223..4635254) Delftia acidovorans SPH-1 5749824 YP_001565253.1 CDS Daci_4237 NC_010002.1 4635272 4636060 R PFAM: cytochrome c class I; KEGG: bam:Bamb_4605 cytochrome c, class I; class I cytochrome c complement(4635272..4636060) Delftia acidovorans SPH-1 5749825 YP_001565254.1 CDS Daci_4238 NC_010002.1 4636230 4637774 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_2432 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(4636230..4637774) Delftia acidovorans SPH-1 5749826 YP_001565255.1 CDS Daci_4239 NC_010002.1 4637771 4638433 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psa:PST_2709 probable two-component response regulator; two component transcriptional regulator complement(4637771..4638433) Delftia acidovorans SPH-1 5749827 YP_001565256.1 CDS Daci_4240 NC_010002.1 4639241 4640239 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein; redoxin domain-containing protein 4639241..4640239 Delftia acidovorans SPH-1 5749828 YP_001565257.1 CDS dsbG NC_010002.1 4640236 4641042 D Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 4640236..4641042 Delftia acidovorans SPH-1 5749829 YP_001565258.1 CDS Daci_4242 NC_010002.1 4641054 4641455 D PFAM: Domain of unknown function DUF1791; KEGG: bbr:BB2321 hypothetical protein; hypothetical protein 4641054..4641455 Delftia acidovorans SPH-1 5749830 YP_001565259.1 CDS Daci_4243 NC_010002.1 4641440 4641904 R KEGG: cvi:CV_1729 hypothetical protein; hypothetical protein complement(4641440..4641904) Delftia acidovorans SPH-1 5749831 YP_001565260.1 CDS Daci_4244 NC_010002.1 4642238 4643083 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_2422 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4642238..4643083 Delftia acidovorans SPH-1 5749832 YP_001565261.1 CDS Daci_4245 NC_010002.1 4643100 4644143 D PFAM: Polysulphide reductase NrfD; KEGG: ajs:Ajs_2423 polysulphide reductase, NrfD; polysulfide reductase NrfD 4643100..4644143 Delftia acidovorans SPH-1 5749833 YP_001565262.1 CDS Daci_4246 NC_010002.1 4644222 4647422 D PFAM: molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_2424 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region 4644222..4647422 Delftia acidovorans SPH-1 5749834 YP_001565263.1 CDS Daci_4247 NC_010002.1 4647423 4648877 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: swi:Swit_0451 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(4647423..4648877) Delftia acidovorans SPH-1 5749835 YP_001565264.1 CDS Daci_4248 NC_010002.1 4648874 4650067 R PFAM: secretion protein HlyD family protein; KEGG: psa:PST_3103 probable multidrug resistance efflux pump; secretion protein HlyD family protein complement(4648874..4650067) Delftia acidovorans SPH-1 5749836 YP_001565265.1 CDS Daci_4249 NC_010002.1 4650097 4651872 R PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_3102 transporter, putative; major facilitator transporter complement(4650097..4651872) Delftia acidovorans SPH-1 5749837 YP_001565266.1 CDS Daci_4250 NC_010002.1 4651874 4652464 R PFAM: regulatory protein TetR; KEGG: xcb:XC_3478 transcriptional regulator TetR/AcrR family; TetR family transcriptional regulator complement(4651874..4652464) Delftia acidovorans SPH-1 5749838 YP_001565267.1 CDS Daci_4251 NC_010002.1 4652529 4653446 R PFAM: pseudouridine synthase; KEGG: aav:Aave_2674 pseudouridine synthase; pseudouridine synthase complement(4652529..4653446) Delftia acidovorans SPH-1 5749839 YP_001565268.1 CDS Daci_4252 NC_010002.1 4653459 4653875 R KEGG: mgm:Mmc1_3147 protein of unknown function DUF132; hypothetical protein complement(4653459..4653875) Delftia acidovorans SPH-1 5749840 YP_001565269.1 CDS Daci_4253 NC_010002.1 4653872 4654099 R KEGG: cph:Cpha266_2656 hypothetical protein; hypothetical protein complement(4653872..4654099) Delftia acidovorans SPH-1 5749841 YP_001565270.1 CDS Daci_4254 NC_010002.1 4654164 4654919 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family; GntR family transcriptional regulator complement(4654164..4654919) Delftia acidovorans SPH-1 5749842 YP_001565271.1 CDS Daci_4255 NC_010002.1 4655058 4655852 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A0033 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4655058..4655852 Delftia acidovorans SPH-1 5749843 YP_001565272.1 CDS Daci_4256 NC_010002.1 4655907 4656839 D PFAM: protein of unknown function DUF849; KEGG: reh:H16_A0032 prokaryotic protein of unknown function,predicted cytosolic protein; hypothetical protein 4655907..4656839 Delftia acidovorans SPH-1 5749844 YP_001565273.1 CDS Daci_4257 NC_010002.1 4656951 4658285 D PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0031 MFS transporter, ACS family; major facilitator transporter 4656951..4658285 Delftia acidovorans SPH-1 5749845 YP_001565274.1 CDS Daci_4258 NC_010002.1 4658334 4660709 D PFAM: AsmA family protein; KEGG: aav:Aave_2673 AsmA family protein; AsmA family protein 4658334..4660709 Delftia acidovorans SPH-1 5749846 YP_001565275.1 CDS Daci_4259 NC_010002.1 4661008 4661424 D PFAM: regulatory protein LysR; KEGG: pol:Bpro_2496 putative transcriptional regulator, ModE family; ModE family transcriptional regulator 4661008..4661424 Delftia acidovorans SPH-1 5749847 YP_001565276.1 CDS Daci_4260 NC_010002.1 4661421 4661921 D PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066; hypothetical protein 4661421..4661921 Delftia acidovorans SPH-1 5749848 YP_001565277.1 CDS Daci_4261 NC_010002.1 4661951 4665337 R KEGG: ajs:Ajs_1967 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(4661951..4665337) Delftia acidovorans SPH-1 5749849 YP_001565278.1 CDS Daci_4262 NC_010002.1 4665330 4666838 R KEGG: ajs:Ajs_1966 hypothetical protein; hypothetical protein complement(4665330..4666838) Delftia acidovorans SPH-1 5749850 YP_001565279.1 CDS Daci_4263 NC_010002.1 4666845 4667729 R KEGG: aav:Aave_2670 hypothetical protein; hypothetical protein complement(4666845..4667729) Delftia acidovorans SPH-1 5749851 YP_001565280.1 CDS Daci_4264 NC_010002.1 4667820 4669184 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4667820..4669184) Delftia acidovorans SPH-1 5749852 YP_001565281.1 CDS Daci_4265 NC_010002.1 4669287 4669925 R KEGG: ajs:Ajs_1962 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(4669287..4669925) Delftia acidovorans SPH-1 5749853 YP_001565282.1 CDS Daci_4266 NC_010002.1 4669928 4670635 R KEGG: aav:Aave_3127 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(4669928..4670635) Delftia acidovorans SPH-1 5749854 YP_001565283.1 CDS Daci_4267 NC_010002.1 4670709 4671251 D KEGG: ajs:Ajs_1960 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator 4670709..4671251 Delftia acidovorans SPH-1 5749855 YP_001565284.1 CDS Daci_4268 NC_010002.1 4671516 4672967 D PFAM: Catalase domain protein; KEGG: ajs:Ajs_1958 catalase; catalase 4671516..4672967 Delftia acidovorans SPH-1 5749856 YP_001565285.1 CDS Daci_4269 NC_010002.1 4673034 4673474 R KEGG: bch:Bcen2424_1345 hypothetical protein; hypothetical protein complement(4673034..4673474) Delftia acidovorans SPH-1 5749857 YP_001565286.1 CDS Daci_4270 NC_010002.1 4673522 4675543 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_II1273 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase complement(4673522..4675543) Delftia acidovorans SPH-1 5749858 YP_001565287.1 CDS Daci_4271 NC_010002.1 4675707 4676246 D PFAM: transcriptional regulator PadR family protein; KEGG: bur:Bcep18194_A4476 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 4675707..4676246 Delftia acidovorans SPH-1 5749859 YP_001565288.1 CDS Daci_4272 NC_010002.1 4676304 4677227 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: reu:Reut_B4613 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(4676304..4677227) Delftia acidovorans SPH-1 5749860 YP_001565289.1 CDS Daci_4273 NC_010002.1 4677250 4678140 R PFAM: amidohydrolase 2; KEGG: bja:blr2281 putative 2-pyrone-4,6-dicarbaxylate hydrolase; amidohydrolase 2 complement(4677250..4678140) Delftia acidovorans SPH-1 5749861 YP_001565290.1 CDS Daci_4274 NC_010002.1 4678145 4679101 R PFAM: conserved hypothetical protein; KEGG: pna:Pnap_4081 uncharacterized protein UPF0065; hypothetical protein complement(4678145..4679101) Delftia acidovorans SPH-1 5749862 YP_001565291.1 CDS Daci_4275 NC_010002.1 4679140 4680144 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1121 uncharacterized protein UPF0065; hypothetical protein complement(4679140..4680144) Delftia acidovorans SPH-1 5749863 YP_001565292.1 CDS Daci_4276 NC_010002.1 4680215 4681147 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_3989 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(4680215..4681147) Delftia acidovorans SPH-1 5749864 YP_001565293.1 CDS Daci_4277 NC_010002.1 4681144 4681830 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: vei:Veis_3988 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase complement(4681144..4681830) Delftia acidovorans SPH-1 5749865 YP_001565294.1 CDS Daci_4278 NC_010002.1 4681879 4682877 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4611 hypothetical protein; hypothetical protein complement(4681879..4682877) Delftia acidovorans SPH-1 5749866 YP_001565295.1 CDS Daci_4279 NC_010002.1 4682874 4683809 R PFAM: amidohydrolase 2; KEGG: reu:Reut_B4612 amidohydrolase 2; amidohydrolase 2 complement(4682874..4683809) Delftia acidovorans SPH-1 5749867 YP_001565296.1 CDS Daci_4280 NC_010002.1 4683893 4684894 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_3985 uncharacterized protein UPF0065; hypothetical protein complement(4683893..4684894) Delftia acidovorans SPH-1 5749868 YP_001565297.1 CDS Daci_4281 NC_010002.1 4685010 4685810 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: vei:Veis_3984 regulatory proteins, IclR; IclR family transcriptional regulator 4685010..4685810 Delftia acidovorans SPH-1 5749869 YP_001565298.1 CDS Daci_4282 NC_010002.1 4685851 4687404 R KEGG: aav:Aave_3131 hypothetical protein; hypothetical protein complement(4685851..4687404) Delftia acidovorans SPH-1 5749870 YP_001565299.1 CDS Daci_4283 NC_010002.1 4687836 4688738 R PFAM: alpha/beta hydrolase fold; KEGG: har:HEAR0772 putative haloacetate dehalogenase; alpha/beta hydrolase fold protein complement(4687836..4688738) Delftia acidovorans SPH-1 5749871 YP_001565300.1 CDS Daci_4284 NC_010002.1 4688872 4689798 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2273 transcriptional regulator, LysR-family; LysR family transcriptional regulator 4688872..4689798 Delftia acidovorans SPH-1 5749872 YP_001565301.1 CDS Daci_4285 NC_010002.1 4689877 4690500 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_1956 uncharacterized peroxidase-related enzyme; hypothetical protein 4689877..4690500 Delftia acidovorans SPH-1 5749873 YP_001565302.1 CDS Daci_4286 NC_010002.1 4690469 4691962 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mxa:MXAN_7072 transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; transcriptional regulator complement(4690469..4691962) Delftia acidovorans SPH-1 5749874 YP_001565303.1 CDS Daci_4287 NC_010002.1 4692059 4692853 D PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase; N-acetyltransferase 4692059..4692853 Delftia acidovorans SPH-1 5749875 YP_001565304.1 CDS Daci_4288 NC_010002.1 4692858 4693862 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_0436 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(4692858..4693862) Delftia acidovorans SPH-1 5749876 YP_001565305.1 CDS Daci_4289 NC_010002.1 4694092 4695060 D PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0969 putative lipoprotein; hypothetical protein 4694092..4695060 Delftia acidovorans SPH-1 5749877 YP_001565306.1 CDS Daci_4290 NC_010002.1 4695104 4696261 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_0435 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 4695104..4696261 Delftia acidovorans SPH-1 5749878 YP_001565307.1 CDS Daci_4291 NC_010002.1 4696613 4697134 D KEGG: stm:STM0277 putative cytoplasmic protein; putative cytoplasmic protein 4696613..4697134 Delftia acidovorans SPH-1 5749879 YP_001565308.1 CDS Daci_4292 NC_010002.1 4697134 4697550 D hypothetical protein 4697134..4697550 Delftia acidovorans SPH-1 5749880 YP_001565309.1 CDS Daci_4293 NC_010002.1 4697598 4698944 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_0477 helix-turn-helix, fis-type; Fis family two component sigma-54-specific transcriptional regulator complement(4697598..4698944) Delftia acidovorans SPH-1 5749881 YP_001565310.1 CDS Daci_4294 NC_010002.1 4698941 4700821 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0478 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase complement(4698941..4700821) Delftia acidovorans SPH-1 5749882 YP_001565311.1 CDS Daci_4295 NC_010002.1 4700868 4702340 R PFAM: sodium:dicarboxylate symporter; KEGG: dar:Daro_0480 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(4700868..4702340) Delftia acidovorans SPH-1 5749883 YP_001565312.1 CDS Daci_4296 NC_010002.1 4702558 4702683 D hypothetical protein 4702558..4702683 Delftia acidovorans SPH-1 5749884 YP_001565313.1 CDS Daci_4297 NC_010002.1 4702769 4704184 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; CHASE3 domain protein; KEGG: aav:Aave_1956 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4702769..4704184) Delftia acidovorans SPH-1 5749885 YP_001565314.1 CDS Daci_4298 NC_010002.1 4704255 4704509 D hypothetical protein 4704255..4704509 Delftia acidovorans SPH-1 5749886 YP_001565315.1 CDS Daci_4299 NC_010002.1 4704573 4705586 D PFAM: regulatory protein MerR; KEGG: ajs:Ajs_2972 putative transcriptional regulator, MerR family; regulatory protein MerR 4704573..4705586 Delftia acidovorans SPH-1 5749887 YP_001565316.1 CDS Daci_4300 NC_010002.1 4705583 4706179 D PFAM: Lipocalin family protein; KEGG: ajs:Ajs_2973 lipocalin family protein; lipocalin family protein 4705583..4706179 Delftia acidovorans SPH-1 5749888 YP_001565317.1 CDS Daci_4301 NC_010002.1 4706215 4707234 D KEGG: bvi:Bcep1808_5899 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4706215..4707234 Delftia acidovorans SPH-1 5749889 YP_001565318.1 CDS Daci_4302 NC_010002.1 4707536 4708144 D KEGG: pol:Bpro_1821 putative transmembrane protein; putative transmembrane protein 4707536..4708144 Delftia acidovorans SPH-1 5749890 YP_001565319.1 CDS Daci_4303 NC_010002.1 4708231 4708722 R KEGG: rfr:Rfer_4043 hypothetical protein; hypothetical protein complement(4708231..4708722) Delftia acidovorans SPH-1 5749891 YP_001565320.1 CDS Daci_4304 NC_010002.1 4708945 4709439 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bmb:BruAb2_0222 transcriptional regulator, MerR family; MerR family transcriptional regulator 4708945..4709439 Delftia acidovorans SPH-1 5749892 YP_001565321.1 CDS Daci_4305 NC_010002.1 4709465 4710160 R PFAM: ThiJ/PfpI domain protein; KEGG: bms:BRA0227 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(4709465..4710160) Delftia acidovorans SPH-1 5749893 YP_001565322.1 CDS Daci_4306 NC_010002.1 4710157 4711083 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN2714 hypothetical protein; NAD-dependent epimerase/dehydratase complement(4710157..4711083) Delftia acidovorans SPH-1 5749894 YP_001565323.1 CDS Daci_4307 NC_010002.1 4711406 4712290 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_4979 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4711406..4712290) Delftia acidovorans SPH-1 5749895 YP_001565324.1 CDS Daci_4308 NC_010002.1 4712410 4713384 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4712410..4713384 Delftia acidovorans SPH-1 5749896 YP_001565325.1 CDS Daci_4309 NC_010002.1 4713533 4714003 R PFAM: thioesterase superfamily protein; KEGG: vei:Veis_3983 thioesterase superfamily protein; thioesterase superfamily protein complement(4713533..4714003) Delftia acidovorans SPH-1 5749897 YP_001565326.1 CDS Daci_4310 NC_010002.1 4714188 4715888 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ajs:Ajs_1950 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 4714188..4715888 Delftia acidovorans SPH-1 5749898 YP_001565327.1 CDS Daci_4311 NC_010002.1 4716293 4717264 D PFAM: protein of unknown function DUF534; KEGG: ajs:Ajs_1949 protein of unknown function DUF534; hypothetical protein 4716293..4717264 Delftia acidovorans SPH-1 5749899 YP_001565328.1 CDS Daci_4312 NC_010002.1 4717388 4718272 D PFAM: inner-membrane translocator; KEGG: aav:Aave_3142 inner-membrane translocator; inner-membrane translocator 4717388..4718272 Delftia acidovorans SPH-1 5749900 YP_001565329.1 CDS Daci_4313 NC_010002.1 4718442 4719236 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3143 ABC transporter-related protein; ABC transporter-like protein 4718442..4719236 Delftia acidovorans SPH-1 5749901 YP_001565330.1 CDS Daci_4314 NC_010002.1 4719304 4719690 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: kpn:KPN_01138 hypothetical protein; cupin complement(4719304..4719690) Delftia acidovorans SPH-1 5749902 YP_001565331.1 CDS Daci_4315 NC_010002.1 4719767 4720579 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_32450 putative transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4719767..4720579) Delftia acidovorans SPH-1 5749903 YP_001565332.1 CDS Daci_4316 NC_010002.1 4720640 4722100 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5203 drug transporter, putative; major facilitator transporter complement(4720640..4722100) Delftia acidovorans SPH-1 5749904 YP_001565333.1 CDS Daci_4317 NC_010002.1 4722194 4723084 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5204 transcriptional regulator, LysR family; LysR family transcriptional regulator 4722194..4723084 Delftia acidovorans SPH-1 5749905 YP_001565334.1 CDS Daci_4318 NC_010002.1 4723340 4724821 D PFAM: amino acid permease-associated region; KEGG: ecx:EcHS_A2291 lysine-specific permease; amino acid permease-associated protein 4723340..4724821 Delftia acidovorans SPH-1 5749906 YP_001565335.1 CDS Daci_4319 NC_010002.1 4724875 4725231 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppu:PP_4040 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4724875..4725231) Delftia acidovorans SPH-1 5749907 YP_001565336.1 CDS Daci_4320 NC_010002.1 4725317 4726084 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL2808 putative transcriptional regulatory protein; AraC family transcriptional regulator complement(4725317..4726084) Delftia acidovorans SPH-1 5749908 YP_001565337.1 CDS Daci_4321 NC_010002.1 4726090 4726545 R PFAM: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_1942 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(4726090..4726545) Delftia acidovorans SPH-1 5749909 YP_001565338.1 CDS Daci_4322 NC_010002.1 4726724 4728634 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mfa:Mfla_2395 periplasmic sensor signal transduction histidine kinase; histidine kinase 4726724..4728634 Delftia acidovorans SPH-1 5749910 YP_001565339.1 CDS Daci_4323 NC_010002.1 4728686 4729177 R PFAM: protein of unknown function DUF606; KEGG: ppf:Pput_3106 protein of unknown function DUF606; hypothetical protein complement(4728686..4729177) Delftia acidovorans SPH-1 5749911 YP_001565340.1 CDS Daci_4324 NC_010002.1 4729276 4730205 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppf:Pput_3105 transcriptional regulator, LysR family; LysR family transcriptional regulator 4729276..4730205 Delftia acidovorans SPH-1 5749912 YP_001565341.1 CDS Daci_4325 NC_010002.1 4730221 4731825 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(4730221..4731825) Delftia acidovorans SPH-1 5749913 YP_001565342.1 CDS Daci_4326 NC_010002.1 4732258 4733433 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aav:Aave_3145 glycine cleavage system T protein; glycine cleavage system T protein 4732258..4733433 Delftia acidovorans SPH-1 5749914 YP_001565343.1 CDS Daci_4327 NC_010002.1 4733570 4733944 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ajs:Ajs_1937 glycine cleavage system H protein; glycine cleavage system H protein 4733570..4733944 Delftia acidovorans SPH-1 5749915 YP_001565344.1 CDS Daci_4328 NC_010002.1 4734016 4736907 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4734016..4736907 Delftia acidovorans SPH-1 5749916 YP_001565345.1 CDS Daci_4329 NC_010002.1 4737031 4739280 D KEGG: aav:Aave_3149 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 4737031..4739280 Delftia acidovorans SPH-1 5749917 YP_001565346.1 CDS Daci_4330 NC_010002.1 4739286 4740023 D PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1933 pseudouridine synthase; pseudouridine synthase 4739286..4740023 Delftia acidovorans SPH-1 5749918 YP_001565347.1 CDS Daci_4331 NC_010002.1 4740364 4741485 D PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3253 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4740364..4741485 Delftia acidovorans SPH-1 5749919 YP_001565348.1 CDS Daci_4332 NC_010002.1 4741583 4742509 D PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3254 inner-membrane translocator; inner-membrane translocator 4741583..4742509 Delftia acidovorans SPH-1 5749920 YP_001565349.1 CDS livM NC_010002.1 4742509 4743747 D Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 4742509..4743747 Delftia acidovorans SPH-1 5749921 YP_001565350.1 CDS livG NC_010002.1 4743800 4744567 D Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 4743800..4744567 Delftia acidovorans SPH-1 5749922 YP_001565351.1 CDS Daci_4335 NC_010002.1 4744567 4745277 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3257 ABC transporter related; ABC transporter-like protein 4744567..4745277 Delftia acidovorans SPH-1 5749923 YP_001565352.1 CDS pdxK NC_010002.1 4745445 4746356 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 4745445..4746356 Delftia acidovorans SPH-1 5749924 YP_001565353.1 CDS Daci_4337 NC_010002.1 4746353 4747129 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_3151 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4746353..4747129 Delftia acidovorans SPH-1 5749925 YP_001565354.1 CDS Daci_4338 NC_010002.1 4747390 4748418 D KEGG: spc:Sputcn32_0588 hypothetical protein; hypothetical protein 4747390..4748418 Delftia acidovorans SPH-1 5749926 YP_001565355.1 CDS ligD NC_010002.1 4748560 4751175 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 4748560..4751175 Delftia acidovorans SPH-1 5749927 YP_001565356.1 CDS Daci_4340 NC_010002.1 4751210 4752187 D TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: ajs:Ajs_2524 Ku domain protein; Ku protein 4751210..4752187 Delftia acidovorans SPH-1 5749928 YP_001565357.1 CDS Daci_4341 NC_010002.1 4752404 4752616 D KEGG: tet:TTHERM_00163900 Bifunctional endo-1,4-beta-xylanase xylA precursor, putative PROSITE: ASN_RICH GLN_RICH; bifunctional endo-1,4-beta-xylanase xylA 4752404..4752616 Delftia acidovorans SPH-1 5749929 YP_001565358.1 CDS Daci_4342 NC_010002.1 4752769 4754856 D PFAM: Catalase domain protein; KEGG: ajs:Ajs_3310 catalase; catalase 4752769..4754856 Delftia acidovorans SPH-1 5749930 YP_001565359.1 CDS Daci_4343 NC_010002.1 4754954 4756351 D KEGG: aav:Aave_1492 putative DNA topoisomerase, type I; putative DNA topoisomerase 4754954..4756351 Delftia acidovorans SPH-1 5749931 YP_001565360.1 CDS Daci_4344 NC_010002.1 4756483 4758126 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aav:Aave_1901 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54-specific transcriptional regulator 4756483..4758126 Delftia acidovorans SPH-1 5749932 YP_001565361.1 CDS Daci_4345 NC_010002.1 4758194 4758721 D KEGG: mpt:Mpe_A2420 hypothetical protein; hypothetical protein 4758194..4758721 Delftia acidovorans SPH-1 5749933 YP_001565362.1 CDS Daci_4346 NC_010002.1 4758793 4759071 D KEGG: nar:Saro_3185 transglycosylase-associated protein; transglycosylase-associated protein 4758793..4759071 Delftia acidovorans SPH-1 5749934 YP_001565363.1 CDS Daci_4347 NC_010002.1 4759090 4760667 R KEGG: rpc:RPC_3208 periplasmic sensor hybrid histidine kinase; hypothetical protein complement(4759090..4760667) Delftia acidovorans SPH-1 5749935 YP_001565364.1 CDS Daci_4348 NC_010002.1 4760996 4762558 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: tbd:Tbd_0732 RNA polymease sigma-54 factor protein; RNA polymerase sigma 54 subunit RpoN 4760996..4762558 Delftia acidovorans SPH-1 5749936 YP_001565365.1 CDS Daci_4349 NC_010002.1 4762727 4763053 D KEGG: ajs:Ajs_2974 hypothetical protein; hypothetical protein 4762727..4763053 Delftia acidovorans SPH-1 5749937 YP_001565366.1 CDS Daci_4350 NC_010002.1 4763102 4763296 D hypothetical protein 4763102..4763296 Delftia acidovorans SPH-1 5749938 YP_001565367.1 CDS Daci_4351 NC_010002.1 4763298 4763498 D KEGG: nwi:Nwi_0342 hypothetical protein; hypothetical protein 4763298..4763498 Delftia acidovorans SPH-1 5749939 YP_001565368.1 CDS Daci_4352 NC_010002.1 4763547 4767410 D KEGG: bbt:BBta_5808 putative sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; multi-sensor hybrid histidine kinase 4763547..4767410 Delftia acidovorans SPH-1 5749940 YP_001565369.1 CDS Daci_4353 NC_010002.1 4767478 4768770 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4767478..4768770 Delftia acidovorans SPH-1 5749941 YP_001565370.1 CDS Daci_4354 NC_010002.1 4769025 4770008 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3152 uncharacterized protein UPF0065; hypothetical protein 4769025..4770008 Delftia acidovorans SPH-1 5749942 YP_001565371.1 CDS Daci_4355 NC_010002.1 4770032 4770673 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pau:PA14_42860 putative hemerythrin; hypothetical protein 4770032..4770673 Delftia acidovorans SPH-1 5749943 YP_001565372.1 CDS Daci_4356 NC_010002.1 4770764 4771201 R PFAM: UspA domain protein; KEGG: aav:Aave_3154 UspA domain protein; UspA domain-containing protein complement(4770764..4771201) Delftia acidovorans SPH-1 5749944 YP_001565373.1 CDS Daci_4357 NC_010002.1 4771301 4772083 R KEGG: aav:Aave_3155 hypothetical protein; hypothetical protein complement(4771301..4772083) Delftia acidovorans SPH-1 5749945 YP_001565374.1 CDS Daci_4358 NC_010002.1 4772204 4773379 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(4772204..4773379) Delftia acidovorans SPH-1 5749946 YP_001565375.1 CDS Daci_4359 NC_010002.1 4773550 4774332 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family; IclR family transcriptional regulator 4773550..4774332 Delftia acidovorans SPH-1 5749947 YP_001565376.1 CDS Daci_4360 NC_010002.1 4774373 4775272 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpa:RPA4695 transcriptional regulator LigR, LysR family; LysR family transcriptional regulator complement(4774373..4775272) Delftia acidovorans SPH-1 5749948 YP_001565377.1 CDS Daci_4361 NC_010002.1 4775476 4776483 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 4775476..4776483 Delftia acidovorans SPH-1 5749949 YP_001565378.1 CDS Daci_4362 NC_010002.1 4776560 4777702 R PFAM: alanine racemase domain protein; KEGG: bpe:BP0453 low-specificity D-threonine aldolase; alanine racemase domain-containing protein complement(4776560..4777702) Delftia acidovorans SPH-1 5749950 YP_001565379.1 CDS Daci_4363 NC_010002.1 4777714 4778118 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ajs:Ajs_3196 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(4777714..4778118) Delftia acidovorans SPH-1 5749951 YP_001565380.1 CDS Daci_4364 NC_010002.1 4778262 4778609 D SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: pna:Pnap_2721 low molecular weight phosphotyrosine protein phosphatase; low molecular weight phosphotyrosine protein phosphatase 4778262..4778609 Delftia acidovorans SPH-1 5749952 YP_001565381.1 CDS Daci_4365 NC_010002.1 4778667 4782863 D PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase; serine/threonine protein kinase 4778667..4782863 Delftia acidovorans SPH-1 5749953 YP_001565382.1 CDS Daci_4366 NC_010002.1 4782881 4783666 D KEGG: aav:Aave_3065 hypothetical protein; hypothetical protein 4782881..4783666 Delftia acidovorans SPH-1 5749954 YP_001565383.1 CDS Daci_4367 NC_010002.1 4783704 4784507 D KEGG: aav:Aave_3064 O-methyltransferase involved in polyketide biosynthesis-like protein; polyketide biosynthesis O-methyltransferase-like protein 4783704..4784507 Delftia acidovorans SPH-1 5749955 YP_001565384.1 CDS Daci_4368 NC_010002.1 4784500 4786683 D PFAM: protein of unknown function DUF181; KEGG: aav:Aave_3061 protein of unknown function DUF181; hypothetical protein 4784500..4786683 Delftia acidovorans SPH-1 5749956 YP_001565385.1 CDS Daci_4369 NC_010002.1 4786803 4787747 D PFAM: Forkhead-associated protein; KEGG: aav:Aave_3060 FHA domain containing protein; FHA domain-containing protein 4786803..4787747 Delftia acidovorans SPH-1 5749957 YP_001565386.1 CDS Daci_4370 NC_010002.1 4787935 4788282 D KEGG: aav:Aave_3059 hypothetical protein; hypothetical protein 4787935..4788282 Delftia acidovorans SPH-1 5749958 YP_001565387.1 CDS Daci_4371 NC_010002.1 4788337 4788786 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ppu:PP_2174 hypothetical protein; glutathione-dependent formaldehyde-activating protein 4788337..4788786 Delftia acidovorans SPH-1 5749959 YP_001565388.1 CDS Daci_4372 NC_010002.1 4789151 4789501 D KEGG: rso:RSc0594 hypothetical protein; hypothetical protein 4789151..4789501 Delftia acidovorans SPH-1 5749960 YP_001565389.1 CDS Daci_4373 NC_010002.1 4789578 4791770 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein; TonB-dependent receptor 4789578..4791770 Delftia acidovorans SPH-1 5749961 YP_001565390.1 CDS Daci_4374 NC_010002.1 4792063 4792656 D hypothetical protein 4792063..4792656 Delftia acidovorans SPH-1 5749962 YP_001565391.1 CDS Daci_4375 NC_010002.1 4792693 4793196 R KEGG: ppf:Pput_2741 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4792693..4793196) Delftia acidovorans SPH-1 5749963 YP_001565392.1 CDS Daci_4376 NC_010002.1 4793328 4793765 R PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_6588 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4793328..4793765) Delftia acidovorans SPH-1 5749964 YP_001565393.1 CDS Daci_4377 NC_010002.1 4794183 4795124 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B0810 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4794183..4795124) Delftia acidovorans SPH-1 5749965 YP_001565394.1 CDS Daci_4378 NC_010002.1 4795228 4796490 D PFAM: monooxygenase FAD-binding; KEGG: bch:Bcen2424_4900 monooxygenase, FAD-binding; monooxygenase FAD-binding 4795228..4796490 Delftia acidovorans SPH-1 5749966 YP_001565395.1 CDS Daci_4379 NC_010002.1 4796941 4797321 D KEGG: rso:RSc1866 hypothetical protein; hypothetical protein 4796941..4797321 Delftia acidovorans SPH-1 5749967 YP_001565396.1 CDS Daci_4380 NC_010002.1 4797371 4798657 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: ppu:PP_1929 arsenite efflux transporter; arsenical pump membrane protein complement(4797371..4798657) Delftia acidovorans SPH-1 5749968 YP_001565397.1 CDS Daci_4381 NC_010002.1 4798734 4799249 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pna:Pnap_2588 protein tyrosine phosphatase; protein tyrosine phosphatase complement(4798734..4799249) Delftia acidovorans SPH-1 5749969 YP_001565398.1 CDS Daci_4382 NC_010002.1 4799290 4799613 R SMART: regulatory protein ArsR; KEGG: ajs:Ajs_3055 regulatory protein, ArsR; ArsR family transcriptional regulator complement(4799290..4799613) Delftia acidovorans SPH-1 5749970 YP_001565399.1 CDS Daci_4383 NC_010002.1 4799780 4800484 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0101 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(4799780..4800484) Delftia acidovorans SPH-1 5749971 YP_001565400.1 CDS Daci_4384 NC_010002.1 4800515 4801516 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1291 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(4800515..4801516) Delftia acidovorans SPH-1 5749972 YP_001565401.1 CDS Daci_4385 NC_010002.1 4801589 4802194 R PFAM: regulatory protein TetR; KEGG: pna:Pnap_1293 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4801589..4802194) Delftia acidovorans SPH-1 5749973 YP_001565402.1 CDS Daci_4386 NC_010002.1 4802250 4803575 D PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO0592 putative flavoprotein monooxygenase; hypothetical protein 4802250..4803575 Delftia acidovorans SPH-1 5749974 YP_001565403.1 CDS Daci_4387 NC_010002.1 4803642 4804598 D PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_3756 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4803642..4804598 Delftia acidovorans SPH-1 5749975 YP_001565404.1 CDS Daci_4388 NC_010002.1 4804602 4805264 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3755 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein 4804602..4805264 Delftia acidovorans SPH-1 5749976 YP_001565405.1 CDS Daci_4389 NC_010002.1 4805261 4806061 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein 4805261..4806061 Delftia acidovorans SPH-1 5749977 YP_001565406.1 CDS Daci_4390 NC_010002.1 4806452 4807000 D KEGG: pmy:Pmen_3752 hypothetical protein; hypothetical protein 4806452..4807000 Delftia acidovorans SPH-1 5749978 YP_001565407.1 CDS Daci_4391 NC_010002.1 4807331 4808494 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_0749 diguanylate cyclase; diguanylate cyclase 4807331..4808494 Delftia acidovorans SPH-1 5749979 YP_001565408.1 CDS Daci_4392 NC_010002.1 4808546 4809625 R PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_5648 glycosyl transferase, family 9; glycosyl transferase family protein complement(4808546..4809625) Delftia acidovorans SPH-1 5749980 YP_001565409.1 CDS Daci_4393 NC_010002.1 4809815 4811929 D PFAM: metallophosphoesterase; KEGG: ilo:IL0118 calcineurin-like phosphoesterase; metallophosphoesterase 4809815..4811929 Delftia acidovorans SPH-1 5749981 YP_001565410.1 CDS Daci_4394 NC_010002.1 4812156 4812311 D hypothetical protein 4812156..4812311 Delftia acidovorans SPH-1 5749982 YP_001565411.1 CDS Daci_4395 NC_010002.1 4812560 4812961 D PFAM: BLUF domain protein; KEGG: vei:Veis_3097 BLUF domain protein; BLUF domain-containing protein 4812560..4812961 Delftia acidovorans SPH-1 5749983 YP_001565412.1 CDS Daci_4396 NC_010002.1 4813022 4814806 D PFAM: EAL domain protein; GAF domain protein; SMART: GGDEF domain containing protein; KEGG: aav:Aave_3096 diguanylate phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4813022..4814806 Delftia acidovorans SPH-1 5749984 YP_001565413.1 CDS Daci_4397 NC_010002.1 4814962 4815660 D PFAM: protein of unknown function DUF204; KEGG: net:Neut_0042 protein of unknown function DUF204; hypothetical protein 4814962..4815660 Delftia acidovorans SPH-1 5749985 YP_001565414.1 CDS Daci_4398 NC_010002.1 4815825 4816232 D PFAM: PRC-barrel domain protein; KEGG: bch:Bcen2424_5606 PRC-barrel domain protein; PRC-barrel domain-containing protein 4815825..4816232 Delftia acidovorans SPH-1 5749986 YP_001565415.1 CDS Daci_4399 NC_010002.1 4816419 4816757 D KEGG: bur:Bcep18194_B0749 hypothetical protein; hypothetical protein 4816419..4816757 Delftia acidovorans SPH-1 5749987 YP_001565416.1 CDS Daci_4400 NC_010002.1 4816760 4817695 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_4590 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4816760..4817695) Delftia acidovorans SPH-1 5749988 YP_001565417.1 CDS Daci_4401 NC_010002.1 4817762 4819147 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_4589 major facilitator superfamily MFS_1; major facilitator transporter 4817762..4819147 Delftia acidovorans SPH-1 5749989 YP_001565418.1 CDS Daci_4402 NC_010002.1 4819144 4819782 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2663 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4819144..4819782 Delftia acidovorans SPH-1 5749990 YP_001565419.1 CDS Daci_4403 NC_010002.1 4819898 4820203 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: har:HEAR0067 putative enzyme involved in biosynthesis of extracellular polysaccharides; antibiotic biosynthesis monooxygenase complement(4819898..4820203) Delftia acidovorans SPH-1 5749991 YP_001565420.1 CDS Daci_4404 NC_010002.1 4820370 4821383 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_3909 alcohol dehydrogenase, zinc-binding domain protein; PIG3 family NAD(P)H quinone oxidoreductase complement(4820370..4821383) Delftia acidovorans SPH-1 5749992 YP_001565421.1 CDS Daci_4405 NC_010002.1 4821506 4822402 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1954 transcriptional regulator, LysR family; LysR family transcriptional regulator 4821506..4822402 Delftia acidovorans SPH-1 5749993 YP_001565422.1 CDS Daci_4406 NC_010002.1 4822374 4824335 R KEGG: aav:Aave_2975 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(4822374..4824335) Delftia acidovorans SPH-1 5749994 YP_001565423.1 CDS Daci_4407 NC_010002.1 4824381 4825241 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_2974 histidine kinase; histidine kinase complement(4824381..4825241) Delftia acidovorans SPH-1 5749995 YP_001565424.1 CDS Daci_4408 NC_010002.1 4825238 4826281 R PFAM: ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aav:Aave_2973 anti-sigma regulatory factor, serine/threonine protein kinase and phosphatase; putative anti-sigma regulatory factor complement(4825238..4826281) Delftia acidovorans SPH-1 5749996 YP_001565425.1 CDS Daci_4409 NC_010002.1 4826272 4826676 R PFAM: ATP-binding region ATPase domain protein; KEGG: aav:Aave_2972 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor complement(4826272..4826676) Delftia acidovorans SPH-1 5749997 YP_001565426.1 CDS Daci_4410 NC_010002.1 4826666 4827040 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aav:Aave_2971 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(4826666..4827040) Delftia acidovorans SPH-1 5749998 YP_001565427.1 CDS Daci_4411 NC_010002.1 4827048 4827890 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aav:Aave_2970 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(4827048..4827890) Delftia acidovorans SPH-1 5749999 YP_001565428.1 CDS Daci_4412 NC_010002.1 4828342 4829043 D PFAM: pentapeptide repeat protein; KEGG: bxe:Bxe_A1294 hypothetical protein; pentapeptide repeat-containing protein 4828342..4829043 Delftia acidovorans SPH-1 5750000 YP_001565429.1 CDS Daci_4413 NC_010002.1 4829079 4830116 R KEGG: gga:396544 nascent polypeptide-associated complex alpha subunit; hypothetical protein complement(4829079..4830116) Delftia acidovorans SPH-1 5750001 YP_001565430.1 CDS Daci_4414 NC_010002.1 4830153 4831709 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bxe:Bxe_B2784 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4830153..4831709 Delftia acidovorans SPH-1 5750002 YP_001565431.1 CDS Daci_4415 NC_010002.1 4831736 4832041 D PFAM: NIPSNAP family containing protein; KEGG: bur:Bcep18194_B0447 protein of unknown function DUF1099; NIPSNAP family protein 4831736..4832041 Delftia acidovorans SPH-1 5750003 YP_001565432.1 CDS Daci_4416 NC_010002.1 4832154 4833146 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pde:Pden_4109 putative sulfonate/nitrate transport system substrate-binding protein; glycine betaine ABC transporter substrate-binding protein 4832154..4833146 Delftia acidovorans SPH-1 5750004 YP_001565433.1 CDS Daci_4418 NC_010002.1 4834025 4834750 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4107 ABC transporter related; ABC transporter-like protein 4834025..4834750 Delftia acidovorans SPH-1 5750006 YP_001565434.1 CDS Daci_4419 NC_010002.1 4834798 4836165 D KEGG: pde:Pden_4106 nitrilotriacetate monooxygenase; nitrilotriacetate monooxygenase 4834798..4836165 Delftia acidovorans SPH-1 5750007 YP_001565435.1 CDS Daci_4420 NC_010002.1 4836197 4837090 R PFAM: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0608 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4836197..4837090) Delftia acidovorans SPH-1 5750008 YP_001565436.1 CDS Daci_4421 NC_010002.1 4837272 4838246 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pol:Bpro_3541 Mg2+ transporter protein, CorA-like; magnesium and cobalt transport protein CorA 4837272..4838246 Delftia acidovorans SPH-1 5750009 YP_001565437.1 CDS Daci_4422 NC_010002.1 4838291 4839307 D PFAM: protein of unknown function DUF344; KEGG: vei:Veis_1774 protein of unknown function DUF344; hypothetical protein 4838291..4839307 Delftia acidovorans SPH-1 5750010 YP_001565438.1 CDS Daci_4423 NC_010002.1 4839368 4845418 R PFAM: protein of unknown function DUF559; KEGG: rfr:Rfer_3040 DNA helicase related protein; hypothetical protein complement(4839368..4845418) Delftia acidovorans SPH-1 5750011 YP_001565439.1 CDS Daci_4424 NC_010002.1 4845616 4845861 R PFAM: protein of unknown function DUF156; KEGG: aha:AHA_0625 hypothetical protein; hypothetical protein complement(4845616..4845861) Delftia acidovorans SPH-1 5750012 YP_001565440.1 CDS Daci_4425 NC_010002.1 4845937 4846992 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pae:PA1297 probable metal transporter; cation diffusion facilitator family transporter 4845937..4846992 Delftia acidovorans SPH-1 5750013 YP_001565441.1 CDS Daci_4426 NC_010002.1 4846995 4848665 R PFAM: extracellular solute-binding protein family 5; KEGG: sit:TM1040_3144 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(4846995..4848665) Delftia acidovorans SPH-1 5750014 YP_001565442.1 CDS Daci_4427 NC_010002.1 4848781 4850424 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rru:Rru_A0138 leucyl aminopeptidase; leucyl aminopeptidase complement(4848781..4850424) Delftia acidovorans SPH-1 5750015 YP_001565443.1 CDS Daci_4428 NC_010002.1 4850509 4850847 D KEGG: oan:Oant_0082 hypothetical protein; hypothetical protein 4850509..4850847 Delftia acidovorans SPH-1 5750016 YP_001565444.1 CDS Daci_4429 NC_010002.1 4850903 4851577 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: bra:BRADO3859 putative demethylmenaquinone methyltransferase; hypothetical protein complement(4850903..4851577) Delftia acidovorans SPH-1 5750017 YP_001565445.1 CDS Daci_4430 NC_010002.1 4851618 4852604 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4610 hypothetical protein; hypothetical protein complement(4851618..4852604) Delftia acidovorans SPH-1 5750018 YP_001565446.1 CDS Daci_4431 NC_010002.1 4852652 4853512 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pna:Pnap_0601 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(4852652..4853512) Delftia acidovorans SPH-1 5750019 YP_001565447.1 CDS Daci_4432 NC_010002.1 4853727 4854383 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pna:Pnap_0602 transcriptional regulator, GntR family; GntR family transcriptional regulator 4853727..4854383 Delftia acidovorans SPH-1 5750020 YP_001565448.1 CDS Daci_4433 NC_010002.1 4854390 4855637 R PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_5897 major facilitator superfamily MFS_1; major facilitator transporter complement(4854390..4855637) Delftia acidovorans SPH-1 5750021 YP_001565449.1 CDS Daci_4434 NC_010002.1 4855722 4856159 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(4855722..4856159) Delftia acidovorans SPH-1 5750022 YP_001565450.1 CDS Daci_4435 NC_010002.1 4856216 4857274 R PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: pol:Bpro_4498 oxidoreductase-like; oxidoreductase domain-containing protein complement(4856216..4857274) Delftia acidovorans SPH-1 5750023 YP_001565451.1 CDS Daci_4436 NC_010002.1 4857286 4858437 R PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family; porin complement(4857286..4858437) Delftia acidovorans SPH-1 5750024 YP_001565452.1 CDS Daci_4437 NC_010002.1 4858529 4859362 R PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: reu:Reut_B5029 shikimate 5-dehydrogenase; shikimate dehydrogenase complement(4858529..4859362) Delftia acidovorans SPH-1 5750025 YP_001565453.1 CDS Daci_4438 NC_010002.1 4859411 4860805 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:bll5462 hypothetical metabolite transport protein; major facilitator transporter complement(4859411..4860805) Delftia acidovorans SPH-1 5750026 YP_001565454.1 CDS Daci_4439 NC_010002.1 4860992 4861762 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_1846 transcriptional regulator, IclR family; IclR family transcriptional regulator 4860992..4861762 Delftia acidovorans SPH-1 5750027 YP_001565455.1 CDS Daci_4440 NC_010002.1 4861762 4862217 D KEGG: spe:Spro_2447 putative RNase H; hypothetical protein 4861762..4862217 Delftia acidovorans SPH-1 5750028 YP_001565456.1 CDS Daci_4441 NC_010002.1 4862234 4863259 R PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase; aldo/keto reductase complement(4862234..4863259) Delftia acidovorans SPH-1 5750029 YP_001565457.1 CDS Daci_4442 NC_010002.1 4863332 4864228 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1656 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(4863332..4864228) Delftia acidovorans SPH-1 5750030 YP_001565458.1 CDS Daci_4443 NC_010002.1 4864306 4865190 R KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(4864306..4865190) Delftia acidovorans SPH-1 5750031 YP_001565459.1 CDS Daci_4444 NC_010002.1 4865242 4866201 R PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase domain-containing protein complement(4865242..4866201) Delftia acidovorans SPH-1 5750032 YP_001565460.1 CDS Daci_4445 NC_010002.1 4866284 4867153 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(4866284..4867153) Delftia acidovorans SPH-1 5750033 YP_001565461.1 CDS Daci_4446 NC_010002.1 4867155 4867613 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(4867155..4867613) Delftia acidovorans SPH-1 5750034 YP_001565462.1 CDS Daci_4447 NC_010002.1 4867662 4868579 R PFAM: amidohydrolase 2; KEGG: azo:azo2539 probable 2-pyrone-4,6-dicarboxylate hydrolase; amidohydrolase 2 complement(4867662..4868579) Delftia acidovorans SPH-1 5750035 YP_001565463.1 CDS Daci_4448 NC_010002.1 4868590 4869273 R TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_4321 dimethylmenaquinone methyltransferase; hypothetical protein complement(4868590..4869273) Delftia acidovorans SPH-1 5750036 YP_001565464.1 CDS Daci_4449 NC_010002.1 4869307 4870335 R PFAM: amidohydrolase 2; KEGG: pna:Pnap_2032 amidohydrolase 2; amidohydrolase 2 complement(4869307..4870335) Delftia acidovorans SPH-1 5750037 YP_001565465.1 CDS Daci_4450 NC_010002.1 4870385 4871767 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2543 putative 4-hydroxybenzoate transporter protein; major facilitator transporter complement(4870385..4871767) Delftia acidovorans SPH-1 5750038 YP_001565466.1 CDS Daci_4451 NC_010002.1 4871869 4873035 R PFAM: protein of unknown function DUF453; KEGG: pna:Pnap_2033 protein of unknown function DUF453; hypothetical protein complement(4871869..4873035) Delftia acidovorans SPH-1 5750039 YP_001565467.1 CDS Daci_4452 NC_010002.1 4873174 4873791 R KEGG: ajs:Ajs_1927 hypothetical protein; hypothetical protein complement(4873174..4873791) Delftia acidovorans SPH-1 5750040 YP_001565468.1 CDS Daci_4453 NC_010002.1 4873877 4874887 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3798 hypothetical protein; hypothetical protein complement(4873877..4874887) Delftia acidovorans SPH-1 5750041 YP_001565469.1 CDS Daci_4454 NC_010002.1 4874884 4875798 R PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein; amidohydrolase 2 complement(4874884..4875798) Delftia acidovorans SPH-1 5750042 YP_001565470.1 CDS Daci_4455 NC_010002.1 4875870 4876757 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B1617 transcriptional regulator, LysR family; LysR family transcriptional regulator 4875870..4876757 Delftia acidovorans SPH-1 5750043 YP_001565471.1 CDS Daci_4456 NC_010002.1 4876903 4877679 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aha:AHA_1994 glucose 1-dehydrogenase; short chain dehydrogenase 4876903..4877679 Delftia acidovorans SPH-1 5750044 YP_001565472.1 CDS Daci_4457 NC_010002.1 4877748 4878263 R KEGG: aav:Aave_0497 rhs element Vgr protein; rhs element Vgr protein complement(4877748..4878263) Delftia acidovorans SPH-1 5750045 YP_001565473.1 CDS Daci_4458 NC_010002.1 4878917 4879342 D PFAM: ferric-uptake regulator; KEGG: vei:Veis_3389 ferric uptake regulator, Fur family; ferric uptake regulator family protein 4878917..4879342 Delftia acidovorans SPH-1 5750046 YP_001565474.1 CDS Daci_4459 NC_010002.1 4879457 4880821 R KEGG: ccr:CC_1520 hypothetical protein; hypothetical protein complement(4879457..4880821) Delftia acidovorans SPH-1 5750047 YP_001565475.1 CDS Daci_4460 NC_010002.1 4880818 4882245 R KEGG: xom:XOO_0574 hypothetical protein; hypothetical protein complement(4880818..4882245) Delftia acidovorans SPH-1 5750048 YP_001565476.1 CDS Daci_4461 NC_010002.1 4882242 4883063 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1518 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4882242..4883063) Delftia acidovorans SPH-1 5750049 YP_001565477.1 CDS Daci_4462 NC_010002.1 4883072 4885345 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4000 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(4883072..4885345) Delftia acidovorans SPH-1 5750050 YP_001565478.1 CDS Daci_4463 NC_010002.1 4885400 4885789 R hypothetical protein complement(4885400..4885789) Delftia acidovorans SPH-1 5750051 YP_001565479.1 CDS Daci_4464 NC_010002.1 4885924 4886538 R PFAM: regulatory protein TetR; KEGG: bbr:BB0627 hypothetical protein; TetR family transcriptional regulator complement(4885924..4886538) Delftia acidovorans SPH-1 5750052 YP_001565480.1 CDS Daci_4465 NC_010002.1 4887306 4887584 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_2580 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4887306..4887584 Delftia acidovorans SPH-1 5750053 YP_001565481.1 CDS Daci_4466 NC_010002.1 4887639 4888043 R PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB4411 hypothetical protein; endoribonuclease L-PSP complement(4887639..4888043) Delftia acidovorans SPH-1 5750054 YP_001565482.1 CDS Daci_4467 NC_010002.1 4888048 4888500 R PFAM: thioesterase superfamily protein; KEGG: bbr:BB4412 probable 4-hydroxybenzoyl CoA thioesterase; thioesterase superfamily protein complement(4888048..4888500) Delftia acidovorans SPH-1 5750055 YP_001565483.1 CDS Daci_4468 NC_010002.1 4888510 4890150 R PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB4413 probable acid-coenzyme A ligase; AMP-dependent synthetase/ligase complement(4888510..4890150) Delftia acidovorans SPH-1 5750056 YP_001565484.1 CDS Daci_4469 NC_010002.1 4890192 4891361 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbr:BB4414 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4890192..4891361) Delftia acidovorans SPH-1 5750057 YP_001565485.1 CDS Daci_4470 NC_010002.1 4891364 4892221 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4891364..4892221) Delftia acidovorans SPH-1 5750058 YP_001565486.1 CDS Daci_4471 NC_010002.1 4892267 4893079 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB4416 probable short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4892267..4893079) Delftia acidovorans SPH-1 5750059 YP_001565487.1 CDS Daci_4472 NC_010002.1 4893076 4895424 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(4893076..4895424) Delftia acidovorans SPH-1 5750060 YP_001565488.1 CDS Daci_4473 NC_010002.1 4895612 4895866 D KEGG: rso:RS01914 hypothetical protein; hypothetical protein 4895612..4895866 Delftia acidovorans SPH-1 5750061 YP_001565489.1 CDS Daci_4474 NC_010002.1 4895863 4896609 D KEGG: bur:Bcep18194_B2831 hypothetical protein; hypothetical protein 4895863..4896609 Delftia acidovorans SPH-1 5750062 YP_001565490.1 CDS Daci_4475 NC_010002.1 4896629 4897030 R KEGG: pol:Bpro_3606 hypothetical protein; hypothetical protein complement(4896629..4897030) Delftia acidovorans SPH-1 5750063 YP_001565491.1 CDS Daci_4476 NC_010002.1 4897737 4898162 R hypothetical protein complement(4897737..4898162) Delftia acidovorans SPH-1 5750064 YP_001565492.1 CDS Daci_4477 NC_010002.1 4898312 4898650 R KEGG: aav:Aave_3790 transposase, IS4 family protein; transposase, IS4 family protein complement(4898312..4898650) Delftia acidovorans SPH-1 5750065 YP_001565493.1 CDS Daci_4478 NC_010002.1 4898710 4899135 R KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein; putative TIS1421-transposase orfA protein complement(4898710..4899135) Delftia acidovorans SPH-1 5750066 YP_001565494.1 CDS Daci_4480 NC_010002.1 4899467 4899580 R hypothetical protein complement(4899467..4899580) Delftia acidovorans SPH-1 5750068 YP_001565495.1 CDS Daci_4481 NC_010002.1 4899734 4900324 R KEGG: aav:Aave_4284 hypothetical protein; hypothetical protein complement(4899734..4900324) Delftia acidovorans SPH-1 5750069 YP_001565496.1 CDS Daci_4482 NC_010002.1 4900303 4904889 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_4283 YD repeat protein; YD repeat-containing protein complement(4900303..4904889) Delftia acidovorans SPH-1 5750070 YP_001565497.1 CDS Daci_4483 NC_010002.1 4904968 4907304 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2735 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(4904968..4907304) Delftia acidovorans SPH-1 5750071 YP_001565498.1 CDS Daci_4484 NC_010002.1 4907540 4908253 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0305 high-affinity branched-chain amino acid transporter, ATP-binding protein; ABC transporter-like protein complement(4907540..4908253) Delftia acidovorans SPH-1 5750072 YP_001565499.1 CDS Daci_4485 NC_010002.1 4908253 4909047 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB4419 putative branched-chain amino acid transporter, ATP-binding protein; ABC transporter-like protein complement(4908253..4909047) Delftia acidovorans SPH-1 5750073 YP_001565500.1 CDS Daci_4486 NC_010002.1 4909044 4910006 R PFAM: inner-membrane translocator; KEGG: bbr:BB4420 probable branched-chain amino acid transport system, permease component; inner-membrane translocator complement(4909044..4910006) Delftia acidovorans SPH-1 5750074 YP_001565501.1 CDS Daci_4487 NC_010002.1 4910009 4910929 R PFAM: inner-membrane translocator; KEGG: bbr:BB4421 probable branched-chain amino acid transport system, permease component; inner-membrane translocator complement(4910009..4910929) Delftia acidovorans SPH-1 5750075 YP_001565502.1 CDS Daci_4488 NC_010002.1 4911040 4912215 R PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB4422 putative ABC transporter substrate binding protein; extracellular ligand-binding receptor complement(4911040..4912215) Delftia acidovorans SPH-1 5750076 YP_001565503.1 CDS Daci_4489 NC_010002.1 4912413 4913318 D KEGG: bpe:BP0300 putative esterase; putative esterase 4912413..4913318 Delftia acidovorans SPH-1 5750077 YP_001565504.1 CDS Daci_4490 NC_010002.1 4913315 4913803 D PFAM: regulatory protein MarR; KEGG: bbr:BB4424 MarR-family transcriptional regulator; MarR family transcriptional regulator 4913315..4913803 Delftia acidovorans SPH-1 5750078 YP_001565505.1 CDS Daci_4491 NC_010002.1 4913826 4915421 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfo:Pfl_2295 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(4913826..4915421) Delftia acidovorans SPH-1 5750079 YP_001565506.1 CDS Daci_4492 NC_010002.1 4915915 4916130 D hypothetical protein 4915915..4916130 Delftia acidovorans SPH-1 5750080 YP_001565507.1 CDS Daci_4493 NC_010002.1 4916208 4917653 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_4245 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(4916208..4917653) Delftia acidovorans SPH-1 5750081 YP_001565508.1 CDS Daci_4494 NC_010002.1 4917961 4919868 D PFAM: Protein of unknown function DUF1800; KEGG: aav:Aave_4704 hypothetical protein; hypothetical protein 4917961..4919868 Delftia acidovorans SPH-1 5750082 YP_001565509.1 CDS Daci_4495 NC_010002.1 4919924 4921372 D PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_4705 protein of unknown function DUF1501; hypothetical protein 4919924..4921372 Delftia acidovorans SPH-1 5750083 YP_001565510.1 CDS Daci_4496 NC_010002.1 4921419 4922315 R KEGG: bam:Bamb_6421 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(4921419..4922315) Delftia acidovorans SPH-1 5750084 YP_001565511.1 CDS Daci_4497 NC_010002.1 4922376 4923485 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pfl:PFL_2354 hypothetical protein; hypothetical protein complement(4922376..4923485) Delftia acidovorans SPH-1 5750085 YP_001565512.1 CDS Daci_4498 NC_010002.1 4923561 4923950 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pfl:PFL_2355 transcriptional regulator, MerR family; MerR family transcriptional regulator 4923561..4923950 Delftia acidovorans SPH-1 5750086 YP_001565513.1 CDS Daci_4499 NC_010002.1 4924047 4924460 D KEGG: sal:Sala_3163 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4924047..4924460 Delftia acidovorans SPH-1 5750087 YP_001565514.1 CDS Daci_4500 NC_010002.1 4924587 4925813 D PFAM: glucose sorbosone dehydrogenase; KEGG: sus:Acid_1883 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 4924587..4925813 Delftia acidovorans SPH-1 5750088 YP_001565515.1 CDS Daci_4501 NC_010002.1 4925889 4926122 R KEGG: ajs:Ajs_4147 hypothetical protein; hypothetical protein complement(4925889..4926122) Delftia acidovorans SPH-1 5750089 YP_001565516.1 CDS Daci_4502 NC_010002.1 4926298 4927680 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rme:Rmet_5794 transcriptional regulator, GntR family; transcriptional regulator 4926298..4927680 Delftia acidovorans SPH-1 5750090 YP_001565517.1 CDS Daci_4503 NC_010002.1 4927811 4928527 R TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: pfl:PFL_2830 aspartate racemase; aspartate racemase complement(4927811..4928527) Delftia acidovorans SPH-1 5750091 YP_001565518.1 CDS Daci_4504 NC_010002.1 4928544 4928960 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_2831 transcriptional regulator, AraC family; AraC family transcriptional regulator 4928544..4928960 Delftia acidovorans SPH-1 5750092 YP_001565519.1 CDS Daci_4505 NC_010002.1 4929342 4930571 D PFAM: EAL domain protein; GAF domain protein; KEGG: psa:PST_3107 EAL domain protein; GAF sensor-containing diguanylate phosphodiesterase 4929342..4930571 Delftia acidovorans SPH-1 5750093 YP_001565520.1 CDS Daci_4506 NC_010002.1 4930865 4931974 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mbb:BCG_1717 putative acyl-CoA dehydrogenase fadE16; acyl-CoA dehydrogenase domain-containing protein 4930865..4931974 Delftia acidovorans SPH-1 5750094 YP_001565521.1 CDS Daci_4507 NC_010002.1 4932056 4932904 D KEGG: wsu:WS1830 hypothetical protein; hypothetical protein 4932056..4932904 Delftia acidovorans SPH-1 5750095 YP_001565522.1 CDS Daci_4508 NC_010002.1 4932913 4934181 D KEGG: hhe:HH1512 hypothetical protein; hypothetical protein 4932913..4934181 Delftia acidovorans SPH-1 5750096 YP_001565523.1 CDS Daci_4509 NC_010002.1 4934380 4934730 D hypothetical protein 4934380..4934730 Delftia acidovorans SPH-1 5750097 YP_001565524.1 CDS Daci_4510 NC_010002.1 4935411 4935662 R KEGG: rso:RSc3419 hypothetical protein; hypothetical protein complement(4935411..4935662) Delftia acidovorans SPH-1 5750098 YP_001565525.1 CDS Daci_4511 NC_010002.1 4935659 4936366 R KEGG: rso:RSc3426 probable transmembrane protein; hypothetical protein complement(4935659..4936366) Delftia acidovorans SPH-1 5750099 YP_001565526.1 CDS Daci_4512 NC_010002.1 4936636 4936860 R hypothetical protein complement(4936636..4936860) Delftia acidovorans SPH-1 5750100 YP_001565527.1 CDS Daci_4513 NC_010002.1 4937307 4937735 R KEGG: tfu:Tfu_1003 hypothetical protein; hypothetical protein complement(4937307..4937735) Delftia acidovorans SPH-1 5750101 YP_001565528.1 CDS Daci_4514 NC_010002.1 4937765 4948834 R KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein; YD repeat-containing protein complement(4937765..4948834) Delftia acidovorans SPH-1 5750102 YP_001565529.1 CDS Daci_4515 NC_010002.1 4948969 4966200 R PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; APHP domain protein; KEGG: gur:Gura_0068 fibronectin, type III domain protein; APHP domain-containing protein complement(4948969..4966200) Delftia acidovorans SPH-1 5750103 YP_001565530.1 CDS Daci_4516 NC_010002.1 4966263 4966796 R hypothetical protein complement(4966263..4966796) Delftia acidovorans SPH-1 5750104 YP_001565531.1 CDS Daci_4517 NC_010002.1 4967211 4967450 D hypothetical protein 4967211..4967450 Delftia acidovorans SPH-1 5750105 YP_001565532.1 CDS Daci_4518 NC_010002.1 4967487 4968407 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ade:Adeh_2212 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4967487..4968407) Delftia acidovorans SPH-1 5750106 YP_001565533.1 CDS Daci_4519 NC_010002.1 4968537 4969592 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tth:TTC0201 L-threonine 3-dehydrogenase; alcohol dehydrogenase 4968537..4969592 Delftia acidovorans SPH-1 5750107 YP_001565534.1 CDS Daci_4520 NC_010002.1 4969589 4970389 D KEGG: bpa:BPP0555 hypothetical protein; hypothetical protein 4969589..4970389 Delftia acidovorans SPH-1 5750108 YP_001565535.1 CDS Daci_4521 NC_010002.1 4970427 4971443 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3895 uncharacterized protein UPF0065; hypothetical protein 4970427..4971443 Delftia acidovorans SPH-1 5750109 YP_001565536.1 CDS Daci_4522 NC_010002.1 4971556 4972635 D PFAM: porin Gram-negative type; KEGG: bte:BTH_II0333 outer membrane porin, putative; porin 4971556..4972635 Delftia acidovorans SPH-1 5750110 YP_001565537.1 CDS Daci_4523 NC_010002.1 4972945 4974429 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_A3378 transcriptional regulator, AraC-family; AraC family transcriptional regulator 4972945..4974429 Delftia acidovorans SPH-1 5750111 YP_001565538.1 CDS Daci_4524 NC_010002.1 4974499 4976298 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_4495 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4974499..4976298 Delftia acidovorans SPH-1 5750112 YP_001565539.1 CDS Daci_4525 NC_010002.1 4976306 4977103 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4512 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4976306..4977103) Delftia acidovorans SPH-1 5750113 YP_001565540.1 CDS Daci_4526 NC_010002.1 4977105 4978115 R PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_4513 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; NMT1/THI5-like domain-containing protein complement(4977105..4978115) Delftia acidovorans SPH-1 5750114 YP_001565541.1 CDS Daci_4527 NC_010002.1 4978154 4978915 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4514 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4978154..4978915) Delftia acidovorans SPH-1 5750115 YP_001565542.1 CDS Daci_4528 NC_010002.1 4978912 4979718 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4515 ABC transporter-related protein; ABC transporter-like protein complement(4978912..4979718) Delftia acidovorans SPH-1 5750116 YP_001565543.1 CDS Daci_4529 NC_010002.1 4979724 4981220 R PFAM: acyl-CoA reductase; KEGG: aav:Aave_4516 putative acyl-CoA reductase; acyl-CoA reductase complement(4979724..4981220) Delftia acidovorans SPH-1 5750117 YP_001565544.1 CDS Daci_4530 NC_010002.1 4981217 4982335 R KEGG: aav:Aave_4517 putative acyl protein synthase/acyl-CoA reductase-like protein; putative acyl protein synthase/acyl-CoA reductase-like protein complement(4981217..4982335) Delftia acidovorans SPH-1 5750118 YP_001565545.1 CDS Daci_4531 NC_010002.1 4982523 4984271 R hypothetical protein complement(4982523..4984271) Delftia acidovorans SPH-1 5750119 YP_001565546.1 CDS Daci_4532 NC_010002.1 4984372 4985436 R KEGG: aha:AHA_0552 transport protein; transporter complement(4984372..4985436) Delftia acidovorans SPH-1 5750120 YP_001565547.1 CDS Daci_4533 NC_010002.1 4985418 4986074 R PFAM: regulatory protein TetR; KEGG: asa:ASA_3759 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4985418..4986074) Delftia acidovorans SPH-1 5750121 YP_001565548.1 CDS Daci_4534 NC_010002.1 4986096 4987925 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase; X-Pro dipeptidyl-peptidase domain-containing protein complement(4986096..4987925) Delftia acidovorans SPH-1 5750122 YP_001565549.1 CDS Daci_4535 NC_010002.1 4988292 4988579 D KEGG: tbd:Tbd_1197 hypothetical protein; hypothetical protein 4988292..4988579 Delftia acidovorans SPH-1 5750123 YP_001565550.1 CDS Daci_4536 NC_010002.1 4988661 4989161 D PFAM: regulatory protein MarR; KEGG: pna:Pnap_0603 transcriptional regulator, MarR family; MarR family transcriptional regulator 4988661..4989161 Delftia acidovorans SPH-1 5750124 YP_001565551.1 CDS Daci_4537 NC_010002.1 4989168 4990055 R PFAM: amidohydrolase 2; KEGG: pna:Pnap_0606 amidohydrolase 2; amidohydrolase 2 complement(4989168..4990055) Delftia acidovorans SPH-1 5750125 YP_001565552.1 CDS Daci_4538 NC_010002.1 4990251 4991960 D PFAM: Tannase and feruloyl esterase; KEGG: bam:Bamb_4911 feruloyl esterase; tannase and feruloyl esterase 4990251..4991960 Delftia acidovorans SPH-1 5750126 YP_001565553.1 CDS Daci_4539 NC_010002.1 4992143 4993291 D PFAM: porin Gram-negative type; KEGG: pol:Bpro_3117 porin, gram-negative type; porin 4992143..4993291 Delftia acidovorans SPH-1 5750127 YP_001565554.1 CDS Daci_4540 NC_010002.1 4993341 4994333 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0604 uncharacterized protein UPF0065; hypothetical protein 4993341..4994333 Delftia acidovorans SPH-1 5750128 YP_001565555.1 CDS Daci_4541 NC_010002.1 4994400 4994885 D PFAM: protein of unknown function UPF0074; KEGG: pla:Plav_0970 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 4994400..4994885 Delftia acidovorans SPH-1 5750129 YP_001565556.1 CDS Daci_4542 NC_010002.1 4994872 4995771 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pau:PA14_09950 putative oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4994872..4995771 Delftia acidovorans SPH-1 5750130 YP_001565557.1 CDS Daci_4543 NC_010002.1 4995787 4996005 R hypothetical protein complement(4995787..4996005) Delftia acidovorans SPH-1 5750131 YP_001565558.1 CDS Daci_4544 NC_010002.1 4996133 4996933 R PFAM: penicillin-binding protein transpeptidase; KEGG: bch:Bcen2424_3379 beta-lactamase; beta-lactamase complement(4996133..4996933) Delftia acidovorans SPH-1 5750132 YP_001565559.1 CDS Daci_4545 NC_010002.1 4997105 4998799 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(4997105..4998799) Delftia acidovorans SPH-1 5750133 YP_001565560.1 CDS Daci_4546 NC_010002.1 4998969 4999553 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pna:Pnap_2042 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 4998969..4999553 Delftia acidovorans SPH-1 5750134 YP_001565561.1 CDS Daci_4547 NC_010002.1 4999555 5000058 R hypothetical protein complement(4999555..5000058) Delftia acidovorans SPH-1 5750135 YP_001565562.1 CDS Daci_4548 NC_010002.1 5000061 5000963 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4781 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5000061..5000963) Delftia acidovorans SPH-1 5750136 YP_001565563.1 CDS Daci_4549 NC_010002.1 5001025 5001894 R PFAM: isochorismatase hydrolase; KEGG: bte:BTH_II0283 isochorismatase family protein family; isochorismatase hydrolase complement(5001025..5001894) Delftia acidovorans SPH-1 5750137 YP_001565564.1 CDS Daci_4550 NC_010002.1 5001942 5006117 R KEGG: ajs:Ajs_2313 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(5001942..5006117) Delftia acidovorans SPH-1 5750138 YP_001565565.1 CDS Daci_4551 NC_010002.1 5006232 5007398 D PFAM: metallophosphoesterase; KEGG: ajs:Ajs_2315 metallophosphoesterase; metallophosphoesterase 5006232..5007398 Delftia acidovorans SPH-1 5750139 YP_001565566.1 CDS Daci_4552 NC_010002.1 5007426 5008535 R KEGG: pol:Bpro_3874 putative hemagglutinin-related protein; putative hemagglutinin-like protein complement(5007426..5008535) Delftia acidovorans SPH-1 5750140 YP_001565567.1 CDS Daci_4553 NC_010002.1 5008532 5009275 R SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3873 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(5008532..5009275) Delftia acidovorans SPH-1 5750141 YP_001565568.1 CDS Daci_4554 NC_010002.1 5009295 5010272 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_3872 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5009295..5010272) Delftia acidovorans SPH-1 5750142 YP_001565569.1 CDS acnA NC_010002.1 5010298 5012913 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(5010298..5012913) Delftia acidovorans SPH-1 5750143 YP_001565570.1 CDS Daci_4556 NC_010002.1 5013011 5014024 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3870 uncharacterized protein UPF0065; hypothetical protein 5013011..5014024 Delftia acidovorans SPH-1 5750144 YP_001565571.1 CDS Daci_4557 NC_010002.1 5014080 5015063 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3869 uncharacterized protein UPF0065; hypothetical protein 5014080..5015063 Delftia acidovorans SPH-1 5750145 YP_001565572.1 CDS Daci_4558 NC_010002.1 5015094 5016239 R KEGG: bur:Bcep18194_A4864 metal-dependent phosphohydrolase; metal-dependent phosphohydrolase complement(5015094..5016239) Delftia acidovorans SPH-1 5750146 YP_001565573.1 CDS Daci_4559 NC_010002.1 5016275 5017129 R KEGG: pfl:PFL_3007 homolog of eukaryotic DNA ligase III; DNA ligase III-like protein complement(5016275..5017129) Delftia acidovorans SPH-1 5750147 YP_001565574.1 CDS Daci_4560 NC_010002.1 5017541 5018398 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0510 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5017541..5018398) Delftia acidovorans SPH-1 5750148 YP_001565575.1 CDS Daci_4561 NC_010002.1 5018529 5018912 D PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_0509 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 5018529..5018912 Delftia acidovorans SPH-1 5750149 YP_001565576.1 CDS Daci_4562 NC_010002.1 5018963 5019847 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2778 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(5018963..5019847) Delftia acidovorans SPH-1 5750150 YP_001565577.1 CDS Daci_4563 NC_010002.1 5019980 5020969 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065; hypothetical protein 5019980..5020969 Delftia acidovorans SPH-1 5750151 YP_001565578.1 CDS Daci_4564 NC_010002.1 5020983 5022614 D PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_3878 gamma-glutamyltransferase; gamma-glutamyltransferase 5020983..5022614 Delftia acidovorans SPH-1 5750152 YP_001565579.1 CDS Daci_4565 NC_010002.1 5022630 5023625 R PFAM: conserved hypothetical protein; KEGG: bbr:BB2684 putative lipoprotein; hypothetical protein complement(5022630..5023625) Delftia acidovorans SPH-1 5750153 YP_001565580.1 CDS Daci_4566 NC_010002.1 5023652 5024542 R PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein; amidohydrolase 2 complement(5023652..5024542) Delftia acidovorans SPH-1 5750154 YP_001565581.1 CDS Daci_4567 NC_010002.1 5024613 5025611 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_3262 transcriptional regulator, LysR family; LysR family transcriptional regulator 5024613..5025611 Delftia acidovorans SPH-1 5750155 YP_001565582.1 CDS Daci_4568 NC_010002.1 5025663 5026868 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2322 major facilitator superfamily MFS_1; major facilitator transporter 5025663..5026868 Delftia acidovorans SPH-1 5750156 YP_001565583.1 CDS Daci_4569 NC_010002.1 5026881 5028014 R KEGG: prw:PsycPRwf_0651 ABC-2 type transporter; ABC-2 type transporter complement(5026881..5028014) Delftia acidovorans SPH-1 5750157 YP_001565584.1 CDS Daci_4570 NC_010002.1 5028016 5029269 R PFAM: ABC-2 type transporter; KEGG: pcr:Pcryo_1038 hypothetical protein; ABC-2 type transporter complement(5028016..5029269) Delftia acidovorans SPH-1 5750158 YP_001565585.1 CDS Daci_4571 NC_010002.1 5029244 5030293 R PFAM: secretion protein HlyD family protein; KEGG: eca:ECA0424 putative membrane protein; secretion protein HlyD family protein complement(5029244..5030293) Delftia acidovorans SPH-1 5750159 YP_001565586.1 CDS Daci_4572 NC_010002.1 5030290 5031741 R PFAM: outer membrane efflux protein; KEGG: prw:PsycPRwf_0654 outer membrane efflux protein; outer membrane efflux protein complement(5030290..5031741) Delftia acidovorans SPH-1 5750160 YP_001565587.1 CDS Daci_4573 NC_010002.1 5032025 5033371 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 5032025..5033371 Delftia acidovorans SPH-1 5750161 YP_001565588.1 CDS Daci_4574 NC_010002.1 5033542 5034453 R PFAM: beta-lactamase; KEGG: ajs:Ajs_2328 beta-lactamase; beta-lactamase complement(5033542..5034453) Delftia acidovorans SPH-1 5750162 YP_001565589.1 CDS Daci_4575 NC_010002.1 5034563 5035420 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2551 transcriptional regulator, LysR family; LysR family transcriptional regulator 5034563..5035420 Delftia acidovorans SPH-1 5750163 YP_001565590.1 CDS Daci_4576 NC_010002.1 5035514 5036179 D PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: ajs:Ajs_2333 glutaredoxin; glutathione S-transferase domain-containing protein 5035514..5036179 Delftia acidovorans SPH-1 5750164 YP_001565591.1 CDS Daci_4577 NC_010002.1 5036286 5036933 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2393 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 5036286..5036933 Delftia acidovorans SPH-1 5750165 YP_001565592.1 CDS Daci_4578 NC_010002.1 5036969 5037925 R PFAM: putative sugar-binding domain protein; KEGG: vei:Veis_2041 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(5036969..5037925) Delftia acidovorans SPH-1 5750166 YP_001565593.1 CDS Daci_4579 NC_010002.1 5037971 5039092 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bch:Bcen2424_4817 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(5037971..5039092) Delftia acidovorans SPH-1 5750167 YP_001565594.1 CDS Daci_4580 NC_010002.1 5039141 5040121 R PFAM: inner-membrane translocator; KEGG: bpm:BURPS1710b_A1792 sugar ABC transporter, permease protein; monosaccharide-transporting ATPase complement(5039141..5040121) Delftia acidovorans SPH-1 5750168 YP_001565595.1 CDS Daci_4581 NC_010002.1 5040170 5040934 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_2043 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(5040170..5040934) Delftia acidovorans SPH-1 5750169 YP_001565596.1 CDS Daci_4582 NC_010002.1 5040931 5041992 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator complement(5040931..5041992) Delftia acidovorans SPH-1 5750170 YP_001565597.1 CDS Daci_4583 NC_010002.1 5042056 5043558 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2046 ABC transporter related; ABC transporter-like protein complement(5042056..5043558) Delftia acidovorans SPH-1 5750171 YP_001565598.1 CDS Daci_4584 NC_010002.1 5043561 5044034 R KEGG: pol:Bpro_1460 sugar-phosphate isomerases, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(5043561..5044034) Delftia acidovorans SPH-1 5750172 YP_001565599.1 CDS Daci_4585 NC_010002.1 5044328 5046124 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 5044328..5046124 Delftia acidovorans SPH-1 5750173 YP_001565600.1 CDS Daci_4586 NC_010002.1 5046128 5046634 R PFAM: Disulphide bond formation protein DsbB; KEGG: aav:Aave_2549 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(5046128..5046634) Delftia acidovorans SPH-1 5750174 YP_001565601.1 CDS Daci_4587 NC_010002.1 5046733 5047860 R KEGG: ajs:Ajs_2335 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(5046733..5047860) Delftia acidovorans SPH-1 5750175 YP_001565602.1 CDS Daci_4588 NC_010002.1 5047898 5048905 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2336 sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter permease complement(5047898..5048905) Delftia acidovorans SPH-1 5750176 YP_001565603.1 CDS Daci_4589 NC_010002.1 5048907 5049833 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2337 sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter permease complement(5048907..5049833) Delftia acidovorans SPH-1 5750177 YP_001565604.1 CDS Daci_4590 NC_010002.1 5049888 5050916 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_2338 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(5049888..5050916) Delftia acidovorans SPH-1 5750178 YP_001565605.1 CDS Daci_4591 NC_010002.1 5051048 5051698 R PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_2544 protein of unknown function DUF1234; hypothetical protein complement(5051048..5051698) Delftia acidovorans SPH-1 5750179 YP_001565606.1 CDS Daci_4592 NC_010002.1 5051814 5052743 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2542 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5051814..5052743) Delftia acidovorans SPH-1 5750180 YP_001565607.1 CDS Daci_4593 NC_010002.1 5052920 5053558 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: aav:Aave_2541 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase 5052920..5053558 Delftia acidovorans SPH-1 5750181 YP_001565608.1 CDS Daci_4594 NC_010002.1 5053894 5054382 D hypothetical protein 5053894..5054382 Delftia acidovorans SPH-1 5750182 YP_001565609.1 CDS Daci_4595 NC_010002.1 5054484 5055032 R PFAM: NADPH-dependent FMN reductase; KEGG: aav:Aave_2540 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(5054484..5055032) Delftia acidovorans SPH-1 5750183 YP_001565610.1 CDS Daci_4596 NC_010002.1 5055128 5055958 R PFAM: NLPA lipoprotein; KEGG: reh:H16_B2232 ABC-type transporter, periplasmic component: MUT family; NLPA lipoprotein complement(5055128..5055958) Delftia acidovorans SPH-1 5750184 YP_001565611.1 CDS Daci_4597 NC_010002.1 5056021 5056686 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_2296 probable transmembrane ABC transporter protein; binding-protein-dependent transport system inner membrane protein complement(5056021..5056686) Delftia acidovorans SPH-1 5750185 YP_001565612.1 CDS Daci_4598 NC_010002.1 5056754 5057635 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_2295 probable ABC transporter system, ATP-binding protein; ABC transporter-like protein complement(5056754..5057635) Delftia acidovorans SPH-1 5750186 YP_001565613.1 CDS Daci_4599 NC_010002.1 5057914 5058762 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2321 ABC transporter related; ABC transporter-like protein 5057914..5058762 Delftia acidovorans SPH-1 5750187 YP_001565614.1 CDS Daci_4600 NC_010002.1 5058780 5059373 D PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein; cobalt transport protein 5058780..5059373 Delftia acidovorans SPH-1 5750188 YP_001565615.1 CDS Daci_4601 NC_010002.1 5059444 5060037 D PFAM: BioY protein; KEGG: ajs:Ajs_2319 BioY protein; BioY protein 5059444..5060037 Delftia acidovorans SPH-1 5750189 YP_001565616.1 CDS Daci_4602 NC_010002.1 5060030 5061550 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2318 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 5060030..5061550 Delftia acidovorans SPH-1 5750190 YP_001565617.1 CDS Daci_4603 NC_010002.1 5061547 5062746 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase 5061547..5062746 Delftia acidovorans SPH-1 5750191 YP_001565618.1 CDS Daci_4604 NC_010002.1 5062751 5063476 D PFAM: nitroreductase; KEGG: ajs:Ajs_2316 nitroreductase; nitroreductase 5062751..5063476 Delftia acidovorans SPH-1 5750192 YP_001565619.1 CDS Daci_4605 NC_010002.1 5063661 5064479 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 lipoprotein, YaeC family; YaeC family lipoprotein complement(5063661..5064479) Delftia acidovorans SPH-1 5750193 YP_001565620.1 CDS Daci_4606 NC_010002.1 5064614 5064964 R KEGG: pna:Pnap_4720 hypothetical protein; hypothetical protein complement(5064614..5064964) Delftia acidovorans SPH-1 5750194 YP_001565621.1 CDS Daci_4607 NC_010002.1 5065393 5068446 R PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_6039 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(5065393..5068446) Delftia acidovorans SPH-1 5750196 YP_001565622.1 CDS Daci_4608 NC_010002.1 5068500 5069498 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_6151 transcriptional regulator, LysR family; LysR family transcriptional regulator 5068500..5069498 Delftia acidovorans SPH-1 5750197 YP_001565623.1 CDS Daci_4609 NC_010002.1 5069716 5070126 R PFAM: regulatory protein MerR; KEGG: ajs:Ajs_2393 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(5069716..5070126) Delftia acidovorans SPH-1 5750199 YP_001565624.1 CDS ihfA NC_010002.1 5070315 5070647 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(5070315..5070647) Delftia acidovorans SPH-1 5750200 YP_001565625.1 CDS pheT NC_010002.1 5070681 5073128 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(5070681..5073128) Delftia acidovorans SPH-1 5750201 YP_001565626.1 CDS pheS NC_010002.1 5073204 5074256 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(5073204..5074256) Delftia acidovorans SPH-1 5750202 YP_001565627.1 CDS rplT NC_010002.1 5074367 5074726 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(5074367..5074726) Delftia acidovorans SPH-1 5750203 YP_001565628.1 CDS rpmI NC_010002.1 5074753 5074956 R PFAM: ribosomal protein L35; KEGG: aav:Aave_2857 ribosomal protein L35; 50S ribosomal protein L35 complement(5074753..5074956) Delftia acidovorans SPH-1 5750204 YP_001565629.1 CDS Daci_4615 NC_010002.1 5075160 5075777 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ajs:Ajs_2399 translation initiation factor IF-3; translation initiation factor IF-3 complement(5075160..5075777) Delftia acidovorans SPH-1 5750205 YP_001565630.1 CDS thrS NC_010002.1 5075858 5077789 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(5075858..5077789) Delftia acidovorans SPH-1 5750206 YP_001565631.1 CDS Daci_4617 NC_010002.1 5078098 5079513 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: vei:Veis_3088 isocitrate lyase; isocitrate lyase complement(5078098..5079513) Delftia acidovorans SPH-1 5750207 YP_001565632.1 CDS Daci_4618 NC_010002.1 5079792 5080742 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 protein of unknown function DUF6, transmembrane; hypothetical protein 5079792..5080742 Delftia acidovorans SPH-1 5750208 YP_001565633.1 CDS Daci_4619 NC_010002.1 5080959 5081258 D PFAM: SWIB/MDM2 domain protein; KEGG: aav:Aave_2865 SWIB/MDM2 domain protein; SWIB/MDM2 domain-containing protein 5080959..5081258 Delftia acidovorans SPH-1 5750209 YP_001565634.1 CDS Daci_4620 NC_010002.1 5081322 5082503 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: vei:Veis_3083 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 5081322..5082503 Delftia acidovorans SPH-1 5750210 YP_001565635.1 CDS Daci_4621 NC_010002.1 5082610 5082882 D KEGG: aav:Aave_3310 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 5082610..5082882 Delftia acidovorans SPH-1 5750211 YP_001565636.1 CDS Daci_4622 NC_010002.1 5082984 5083685 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_3311 TonB family protein; TonB family protein 5082984..5083685 Delftia acidovorans SPH-1 5750212 YP_001565637.1 CDS Daci_4623 NC_010002.1 5083701 5084423 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2407 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 5083701..5084423 Delftia acidovorans SPH-1 5750213 YP_001565638.1 CDS Daci_4624 NC_010002.1 5084427 5084840 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_3313 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 5084427..5084840 Delftia acidovorans SPH-1 5750214 YP_001565639.1 CDS Daci_4625 NC_010002.1 5085041 5085262 D KEGG: ajs:Ajs_2409 hypothetical protein; hypothetical protein 5085041..5085262 Delftia acidovorans SPH-1 5750215 YP_001565640.1 CDS Daci_4626 NC_010002.1 5085523 5085948 R PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 protein of unknown function DUF336; hypothetical protein complement(5085523..5085948) Delftia acidovorans SPH-1 5750216 YP_001565641.1 CDS Daci_4627 NC_010002.1 5086121 5086813 D PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 protein of unknown function UPF0005; hypothetical protein 5086121..5086813 Delftia acidovorans SPH-1 5750217 YP_001565642.1 CDS Daci_4628 NC_010002.1 5086880 5087308 D KEGG: aav:Aave_3317 hypothetical protein; hypothetical protein 5086880..5087308 Delftia acidovorans SPH-1 5750218 YP_001565643.1 CDS rumA NC_010002.1 5087410 5088882 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(5087410..5088882) Delftia acidovorans SPH-1 5750219 YP_001565644.1 CDS Daci_4630 NC_010002.1 5088959 5089276 R KEGG: aav:Aave_3319 hypothetical protein; hypothetical protein complement(5088959..5089276) Delftia acidovorans SPH-1 5750220 YP_001565645.1 CDS Daci_4631 NC_010002.1 5089464 5090024 D KEGG: aav:Aave_1942 transcriptional regulator-like protein; transcriptional regulator-like protein 5089464..5090024 Delftia acidovorans SPH-1 5750221 YP_001565646.1 CDS Daci_4632 NC_010002.1 5090057 5090926 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: aav:Aave_1940 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 5090057..5090926 Delftia acidovorans SPH-1 5750222 YP_001565647.1 CDS Daci_4633 NC_010002.1 5090919 5091323 D KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 5090919..5091323 Delftia acidovorans SPH-1 5750223 YP_001565648.1 CDS Daci_4634 NC_010002.1 5091320 5091799 D KEGG: pna:Pnap_1479 integral membrane protein-like protein; integral membrane protein 5091320..5091799 Delftia acidovorans SPH-1 5750224 YP_001565649.1 CDS Daci_4635 NC_010002.1 5091828 5092043 R PFAM: TOBE domain protein; KEGG: aav:Aave_3040 TOBE domain protein; TOBE domain-containing protein complement(5091828..5092043) Delftia acidovorans SPH-1 5750225 YP_001565650.1 CDS Daci_4636 NC_010002.1 5092098 5093078 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3041 ABC transporter-related protein; ABC transporter-like protein complement(5092098..5093078) Delftia acidovorans SPH-1 5750226 YP_001565651.1 CDS Daci_4637 NC_010002.1 5093094 5093945 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3042 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5093094..5093945) Delftia acidovorans SPH-1 5750227 YP_001565652.1 CDS Daci_4638 NC_010002.1 5093957 5095117 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(5093957..5095117) Delftia acidovorans SPH-1 5750228 YP_001565653.1 CDS Daci_4639 NC_010002.1 5095156 5096211 R KEGG: pna:Pnap_2419 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein complement(5095156..5096211) Delftia acidovorans SPH-1 5750229 YP_001565654.1 CDS Daci_4640 NC_010002.1 5096235 5097245 R KEGG: rfr:Rfer_1779 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein complement(5096235..5097245) Delftia acidovorans SPH-1 5750230 YP_001565655.1 CDS Daci_4641 NC_010002.1 5097654 5098676 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3046 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(5097654..5098676) Delftia acidovorans SPH-1 5750231 YP_001565656.1 CDS Daci_4642 NC_010002.1 5098821 5099093 D PFAM: Fe(II) trafficking protein YggX; KEGG: rfr:Rfer_2102 Fe(II) trafficking protein YggX; hypothetical protein 5098821..5099093 Delftia acidovorans SPH-1 5750232 YP_001565657.1 CDS Daci_4643 NC_010002.1 5099266 5099934 D PFAM: protein of unknown function UPF0126; KEGG: ajs:Ajs_1797 protein of unknown function UPF0126; hypothetical protein 5099266..5099934 Delftia acidovorans SPH-1 5750233 YP_001565658.1 CDS Daci_4644 NC_010002.1 5099944 5101881 D TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: ajs:Ajs_1796 protein of unknown function DUF752; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 5099944..5101881 Delftia acidovorans SPH-1 5750234 YP_001565659.1 CDS Daci_4645 NC_010002.1 5102073 5104154 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo3836 probable TonB-dependent receptor; TonB-dependent receptor 5102073..5104154 Delftia acidovorans SPH-1 5750235 YP_001565660.1 CDS Daci_4646 NC_010002.1 5104177 5105052 D KEGG: azo:azo3843 hypothetical protein; hypothetical protein 5104177..5105052 Delftia acidovorans SPH-1 5750236 YP_001565661.1 CDS Daci_4647 NC_010002.1 5105086 5105634 D KEGG: rru:Rru_A0135 molybdenum ABC transporter ATP-binding protein; molybdenum ABC transporter ATP-binding protein 5105086..5105634 Delftia acidovorans SPH-1 5750237 YP_001565662.1 CDS Daci_4648 NC_010002.1 5105640 5106701 D PFAM: periplasmic binding protein; KEGG: rpc:RPC_1985 periplasmic binding protein; periplasmic-binding protein 5105640..5106701 Delftia acidovorans SPH-1 5750238 YP_001565663.1 CDS Daci_4649 NC_010002.1 5106701 5107714 D PFAM: transport system permease protein; ABC-3 protein; KEGG: pde:Pden_0865 transport system permease protein; transport system permease 5106701..5107714 Delftia acidovorans SPH-1 5750239 YP_001565664.1 CDS Daci_4650 NC_010002.1 5107716 5108501 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3223 ABC transporter component; ABC transporter-like protein 5107716..5108501 Delftia acidovorans SPH-1 5750240 YP_001565665.1 CDS Daci_4651 NC_010002.1 5108498 5109541 R KEGG: xcc:XCC0173 hypothetical protein; hypothetical protein complement(5108498..5109541) Delftia acidovorans SPH-1 5750241 YP_001565666.1 CDS Daci_4652 NC_010002.1 5109747 5111636 D PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: aav:Aave_3053 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite/sulfite reductase hemoprotein subunit beta 5109747..5111636 Delftia acidovorans SPH-1 5750242 YP_001565667.1 CDS Daci_4653 NC_010002.1 5111665 5112048 D PFAM: conserved hypothetical protein; KEGG: aav:Aave_3054 uncharacterized conserved protein UCP030820; hypothetical protein 5111665..5112048 Delftia acidovorans SPH-1 5750243 YP_001565668.1 CDS Daci_4654 NC_010002.1 5112050 5112808 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: vei:Veis_4333 phosphoadenylyl-sulfate reductase (thioredoxin); phosphoadenylyl-sulfate reductase 5112050..5112808 Delftia acidovorans SPH-1 5750244 YP_001565669.1 CDS Daci_4655 NC_010002.1 5112832 5113782 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 5112832..5113782 Delftia acidovorans SPH-1 5750245 YP_001565670.1 CDS Daci_4656 NC_010002.1 5113782 5115173 D KEGG: aav:Aave_3056 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase large subunit 5113782..5115173 Delftia acidovorans SPH-1 5750246 YP_001565671.1 CDS Daci_4657 NC_010002.1 5115338 5115667 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vei:Veis_4317 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 5115338..5115667 Delftia acidovorans SPH-1 5750247 YP_001565672.1 CDS Daci_4658 NC_010002.1 5115681 5116733 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_1789 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5115681..5116733 Delftia acidovorans SPH-1 5750248 YP_001565673.1 CDS Daci_4659 NC_010002.1 5116806 5117093 D KEGG: ajs:Ajs_1667 hypothetical protein; hypothetical protein 5116806..5117093 Delftia acidovorans SPH-1 5750249 YP_001565674.1 CDS psd NC_010002.1 5117139 5117993 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(5117139..5117993) Delftia acidovorans SPH-1 5750250 YP_001565675.1 CDS infA NC_010002.1 5118444 5118692 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 5118444..5118692 Delftia acidovorans SPH-1 5750251 YP_001565676.1 CDS Daci_4662 NC_010002.1 5119203 5119562 D KEGG: rle:RL4672 hypothetical protein; hypothetical protein 5119203..5119562 Delftia acidovorans SPH-1 5750253 YP_001565677.1 CDS Daci_4663 NC_010002.1 5119627 5120175 D KEGG: par:Psyc_0986 possible neutral zinc metallopeptidase; putative neutral zinc metallopeptidase 5119627..5120175 Delftia acidovorans SPH-1 5750254 YP_001565678.1 CDS Daci_4664 NC_010002.1 5120578 5120802 D KEGG: mca:MCA1887 hypothetical protein; hypothetical protein 5120578..5120802 Delftia acidovorans SPH-1 5750255 YP_001565679.1 CDS Daci_4665 NC_010002.1 5121029 5121727 R PFAM: protein of unknown function DUF159; KEGG: pol:Bpro_1950 protein of unknown function DUF159; hypothetical protein complement(5121029..5121727) Delftia acidovorans SPH-1 5750256 YP_001565680.1 CDS Daci_4666 NC_010002.1 5121781 5122059 D hypothetical protein 5121781..5122059 Delftia acidovorans SPH-1 5750257 YP_001565681.1 CDS Daci_4667 NC_010002.1 5122059 5122277 D hypothetical protein 5122059..5122277 Delftia acidovorans SPH-1 5750258 YP_001565682.1 CDS Daci_4668 NC_010002.1 5122287 5122535 D hypothetical protein 5122287..5122535 Delftia acidovorans SPH-1 5750259 YP_001565683.1 CDS Daci_4669 NC_010002.1 5124522 5124803 R hypothetical protein complement(5124522..5124803) Delftia acidovorans SPH-1 5750260 YP_001565684.1 CDS Daci_4670 NC_010002.1 5124996 5125607 R PFAM: glycoside hydrolase family 24; KEGG: aav:Aave_1729 putative endolysin (lysis protein) (lysozyme); glycoside hydrolase family protein complement(5124996..5125607) Delftia acidovorans SPH-1 5750261 YP_001565685.1 CDS Daci_4671 NC_010002.1 5125604 5125906 R hypothetical protein complement(5125604..5125906) Delftia acidovorans SPH-1 5750262 YP_001565686.1 CDS Daci_4672 NC_010002.1 5125915 5126349 R KEGG: aav:Aave_2373 hypothetical protein; hypothetical protein complement(5125915..5126349) Delftia acidovorans SPH-1 5750263 YP_001565687.1 CDS Daci_4673 NC_010002.1 5126355 5127155 R KEGG: mmu:100041170 similar to loricrin; loricrin-like protein complement(5126355..5127155) Delftia acidovorans SPH-1 5750264 YP_001565688.1 CDS Daci_4674 NC_010002.1 5127152 5128168 R KEGG: rsq:Rsph17025_2083 hypothetical protein; hypothetical protein complement(5127152..5128168) Delftia acidovorans SPH-1 5750265 YP_001565689.1 CDS Daci_4675 NC_010002.1 5128165 5129115 R KEGG: aav:Aave_1783 carbohydrate-binding family V/XII; hypothetical protein complement(5128165..5129115) Delftia acidovorans SPH-1 5750266 YP_001565690.1 CDS Daci_4676 NC_010002.1 5129112 5133941 R KEGG: aav:Aave_1782 prophage tail length tape measure; hypothetical protein complement(5129112..5133941) Delftia acidovorans SPH-1 5750267 YP_001565691.1 CDS Daci_4677 NC_010002.1 5133957 5134412 R KEGG: nar:Saro_0659 hypothetical protein; hypothetical protein complement(5133957..5134412) Delftia acidovorans SPH-1 5750268 YP_001565692.1 CDS Daci_4678 NC_010002.1 5134421 5134891 R hypothetical protein complement(5134421..5134891) Delftia acidovorans SPH-1 5750269 YP_001565693.1 CDS Daci_4679 NC_010002.1 5134927 5135595 R KEGG: nar:Saro_0657 hypothetical protein; hypothetical protein complement(5134927..5135595) Delftia acidovorans SPH-1 5750270 YP_001565694.1 CDS Daci_4680 NC_010002.1 5135608 5136078 R hypothetical protein complement(5135608..5136078) Delftia acidovorans SPH-1 5750271 YP_001565695.1 CDS Daci_4681 NC_010002.1 5136080 5136388 R KEGG: pna:Pnap_2251 hypothetical protein; hypothetical protein complement(5136080..5136388) Delftia acidovorans SPH-1 5750272 YP_001565696.1 CDS Daci_4682 NC_010002.1 5136406 5136762 R KEGG: pna:Pnap_2252 putative RecA/RadA recombinase; putative RecA/RadA recombinase complement(5136406..5136762) Delftia acidovorans SPH-1 5750273 YP_001565697.1 CDS Daci_4683 NC_010002.1 5136804 5138885 R PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_1504 peptidase U35 phage prohead HK97; peptidase U35 phage prohead HK97 complement(5136804..5138885) Delftia acidovorans SPH-1 5750274 YP_001565698.1 CDS Daci_4684 NC_010002.1 5138939 5140441 R TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda; lambda family phage portal protein complement(5138939..5140441) Delftia acidovorans SPH-1 5750275 YP_001565699.1 CDS Daci_4685 NC_010002.1 5140444 5140674 R hypothetical protein complement(5140444..5140674) Delftia acidovorans SPH-1 5750276 YP_001565700.1 CDS Daci_4686 NC_010002.1 5140702 5141082 R PFAM: Resolvase helix-turn-helix domain protein; resolvase domain-containing protein complement(5140702..5141082) Delftia acidovorans SPH-1 5750277 YP_001565701.1 CDS Daci_4687 NC_010002.1 5141088 5143184 R PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage; terminase GpA complement(5141088..5143184) Delftia acidovorans SPH-1 5750278 YP_001565702.1 CDS Daci_4688 NC_010002.1 5143181 5143723 R KEGG: atc:AGR_C_800 hypothetical protein; hypothetical protein complement(5143181..5143723) Delftia acidovorans SPH-1 5750279 YP_001565703.1 CDS Daci_4689 NC_010002.1 5143869 5144939 R PFAM: protein of unknown function DUF1376; KEGG: xft:PD1347 hypothetical protein; hypothetical protein complement(5143869..5144939) Delftia acidovorans SPH-1 5750280 YP_001565704.1 CDS Daci_4690 NC_010002.1 5144964 5145305 R hypothetical protein complement(5144964..5145305) Delftia acidovorans SPH-1 5750281 YP_001565705.1 CDS Daci_4691 NC_010002.1 5145335 5146183 R KEGG: pna:Pnap_2259 hypothetical protein; hypothetical protein complement(5145335..5146183) Delftia acidovorans SPH-1 5750282 YP_001565706.1 CDS Daci_4692 NC_010002.1 5146173 5146709 R KEGG: pna:Pnap_2262 hypothetical protein; hypothetical protein complement(5146173..5146709) Delftia acidovorans SPH-1 5750283 YP_001565707.1 CDS Daci_4693 NC_010002.1 5146716 5146979 D hypothetical protein 5146716..5146979 Delftia acidovorans SPH-1 5750284 YP_001565708.1 CDS Daci_4694 NC_010002.1 5147108 5147692 D hypothetical protein 5147108..5147692 Delftia acidovorans SPH-1 5750285 YP_001565709.1 CDS Daci_4695 NC_010002.1 5147710 5148021 D hypothetical protein 5147710..5148021 Delftia acidovorans SPH-1 5750286 YP_001565710.1 CDS Daci_4696 NC_010002.1 5148026 5148268 R hypothetical protein complement(5148026..5148268) Delftia acidovorans SPH-1 5750287 YP_001565711.1 CDS Daci_4697 NC_010002.1 5148542 5148946 D hypothetical protein 5148542..5148946 Delftia acidovorans SPH-1 5750288 YP_001565712.1 CDS Daci_4698 NC_010002.1 5149576 5150907 R hypothetical protein complement(5149576..5150907) Delftia acidovorans SPH-1 5750289 YP_001565713.1 CDS Daci_4699 NC_010002.1 5151452 5151703 D hypothetical protein 5151452..5151703 Delftia acidovorans SPH-1 5750290 YP_001565714.1 CDS Daci_4700 NC_010002.1 5151732 5151965 D hypothetical protein 5151732..5151965 Delftia acidovorans SPH-1 5750291 YP_001565715.1 CDS Daci_4701 NC_010002.1 5151999 5152655 D hypothetical protein 5151999..5152655 Delftia acidovorans SPH-1 5750292 YP_001565716.1 CDS Daci_4702 NC_010002.1 5152652 5153491 D KEGG: pau:PA14_58970 hypothetical protein; hypothetical protein 5152652..5153491 Delftia acidovorans SPH-1 5750293 YP_001565717.1 CDS Daci_4703 NC_010002.1 5153451 5153804 D hypothetical protein 5153451..5153804 Delftia acidovorans SPH-1 5750294 YP_001565718.1 CDS Daci_4704 NC_010002.1 5154929 5155789 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: vei:Veis_3755 D12 class N6 adenine-specific DNA methyltransferase; D12 class N6 adenine-specific DNA methyltransferase 5154929..5155789 Delftia acidovorans SPH-1 5750295 YP_001565719.1 CDS Daci_4705 NC_010002.1 5155856 5156350 R hypothetical protein complement(5155856..5156350) Delftia acidovorans SPH-1 5750296 YP_001565720.1 CDS Daci_4706 NC_010002.1 5156514 5157449 R KEGG: aav:Aave_4521 hypothetical protein; hypothetical protein complement(5156514..5157449) Delftia acidovorans SPH-1 5750297 YP_001565721.1 CDS Daci_4707 NC_010002.1 5157591 5157821 D hypothetical protein 5157591..5157821 Delftia acidovorans SPH-1 5750298 YP_001565722.1 CDS Daci_4708 NC_010002.1 5157818 5158846 D PFAM: integrase family protein; KEGG: bbr:BB1661 integrase; integrase family protein 5157818..5158846 Delftia acidovorans SPH-1 5750299 YP_001565723.1 CDS Daci_4709 NC_010002.1 5159260 5159694 D KEGG: ypi:YpsIP31758_3075 putative lipoprotein; putative lipoprotein 5159260..5159694 Delftia acidovorans SPH-1 5750300 YP_001565724.1 CDS Daci_4710 NC_010002.1 5159766 5160389 R PFAM: Glutathione S-transferase domain; KEGG: pfl:PFL_4586 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(5159766..5160389) Delftia acidovorans SPH-1 5750301 YP_001565725.1 CDS Daci_4711 NC_010002.1 5160491 5160955 D PFAM: ribonuclease H; KEGG: pol:Bpro_4830 ribonuclease H; ribonuclease H 5160491..5160955 Delftia acidovorans SPH-1 5750302 YP_001565726.1 CDS Daci_4712 NC_010002.1 5161015 5161341 R KEGG: bbr:BB2884 hypothetical protein; hypothetical protein complement(5161015..5161341) Delftia acidovorans SPH-1 5750303 YP_001565727.1 CDS Daci_4713 NC_010002.1 5162323 5166177 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ana:alr0276 hypothetical protein; endonuclease/exonuclease/phosphatase complement(5162323..5166177) Delftia acidovorans SPH-1 5750304 YP_001565728.1 CDS Daci_4714 NC_010002.1 5166599 5166895 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 5166599..5166895 Delftia acidovorans SPH-1 5750305 YP_001565729.1 CDS Daci_4715 NC_010002.1 5166992 5167210 D hypothetical protein 5166992..5167210 Delftia acidovorans SPH-1 5750306 YP_001565730.1 CDS Daci_4716 NC_010002.1 5167743 5168408 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(5167743..5168408) Delftia acidovorans SPH-1 5750308 YP_001565731.1 CDS Daci_4717 NC_010002.1 5168414 5169136 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(5168414..5169136) Delftia acidovorans SPH-1 5750309 YP_001565732.1 CDS Daci_4718 NC_010002.1 5169221 5169880 R PFAM: OmpA/MotB domain protein; KEGG: aav:Aave_3279 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(5169221..5169880) Delftia acidovorans SPH-1 5750310 YP_001565733.1 CDS Daci_4719 NC_010002.1 5170110 5172776 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 5170110..5172776 Delftia acidovorans SPH-1 5750311 YP_001565734.1 CDS Daci_4720 NC_010002.1 5172899 5174008 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 5172899..5174008 Delftia acidovorans SPH-1 5750312 YP_001565735.1 CDS Daci_4721 NC_010002.1 5174028 5175128 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_2466 chorismate mutase; chorismate mutase 5174028..5175128 Delftia acidovorans SPH-1 5750313 YP_001565736.1 CDS Daci_4722 NC_010002.1 5175128 5176006 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: aav:Aave_3283 prephenate dehydrogenase; prephenate dehydrogenase 5175128..5176006 Delftia acidovorans SPH-1 5750314 YP_001565737.1 CDS Daci_4723 NC_010002.1 5176121 5178148 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 5176121..5178148 Delftia acidovorans SPH-1 5750315 YP_001565738.1 CDS rpsA NC_010002.1 5178334 5180019 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 5178334..5180019 Delftia acidovorans SPH-1 5750316 YP_001565739.1 CDS Daci_4725 NC_010002.1 5180110 5180451 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; integration host factor subunit beta 5180110..5180451 Delftia acidovorans SPH-1 5750317 YP_001565740.1 CDS Daci_4726 NC_010002.1 5180532 5180852 D KEGG: aav:Aave_3287 hypothetical protein; hypothetical protein 5180532..5180852 Delftia acidovorans SPH-1 5750318 YP_001565741.1 CDS Daci_4727 NC_010002.1 5180842 5182017 D SMART: Tetratricopeptide domain protein; KEGG: vei:Veis_3911 tetratricopeptide TPR_4; hypothetical protein 5180842..5182017 Delftia acidovorans SPH-1 5750319 YP_001565742.1 CDS Daci_4728 NC_010002.1 5182278 5182688 D KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein 5182278..5182688 Delftia acidovorans SPH-1 5750320 YP_001565743.1 CDS Daci_4729 NC_010002.1 5182828 5185806 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 5182828..5185806 Delftia acidovorans SPH-1 5750321 YP_001565744.1 CDS Daci_4730 NC_010002.1 5185806 5186171 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 5185806..5186171 Delftia acidovorans SPH-1 5750322 YP_001565745.1 CDS Daci_4731 NC_010002.1 5186168 5187964 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 5186168..5187964 Delftia acidovorans SPH-1 5750323 YP_001565746.1 CDS Daci_4732 NC_010002.1 5187961 5188452 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 5187961..5188452 Delftia acidovorans SPH-1 5750324 YP_001565747.1 CDS Daci_4733 NC_010002.1 5188449 5188727 D PFAM: multiple resistance and pH regulation protein F; KEGG: vei:Veis_3905 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 5188449..5188727 Delftia acidovorans SPH-1 5750325 YP_001565748.1 CDS Daci_4734 NC_010002.1 5188724 5189107 D PFAM: Na+/H+ antiporter subunit; KEGG: ajs:Ajs_2479 Na+/H+ antiporter subunit; Na+/H+ antiporter subunit 5188724..5189107 Delftia acidovorans SPH-1 5750326 YP_001565749.1 CDS Daci_4735 NC_010002.1 5189351 5190220 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2487 conserved hypothetical protein 730; hypothetical protein 5189351..5190220 Delftia acidovorans SPH-1 5750327 YP_001565750.1 CDS Daci_4736 NC_010002.1 5190273 5191454 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily MFS_1; major facilitator transporter complement(5190273..5191454) Delftia acidovorans SPH-1 5750328 YP_001565751.1 CDS Daci_4737 NC_010002.1 5191456 5192985 R PFAM: protein of unknown function DUF195; KEGG: ajs:Ajs_2489 protein of unknown function DUF195; hypothetical protein complement(5191456..5192985) Delftia acidovorans SPH-1 5750329 YP_001565752.1 CDS Daci_4738 NC_010002.1 5193057 5194064 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_2069 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(5193057..5194064) Delftia acidovorans SPH-1 5750330 YP_001565753.1 CDS Daci_4739 NC_010002.1 5194102 5195529 R KEGG: ajs:Ajs_2491 putative transmembrane protein; putative transmembrane protein complement(5194102..5195529) Delftia acidovorans SPH-1 5750331 YP_001565754.1 CDS Daci_4740 NC_010002.1 5195591 5196811 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(5195591..5196811) Delftia acidovorans SPH-1 5750332 YP_001565755.1 CDS Daci_4741 NC_010002.1 5196927 5197388 R PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2141 thioesterase superfamily; thioesterase superfamily protein complement(5196927..5197388) Delftia acidovorans SPH-1 5750333 YP_001565756.1 CDS Daci_4742 NC_010002.1 5197713 5198261 D TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: vei:Veis_2554 phasin family protein; phasin family protein 5197713..5198261 Delftia acidovorans SPH-1 5750334 YP_001565757.1 CDS Daci_4743 NC_010002.1 5198563 5199609 D PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein, family 1; extracellular solute-binding protein 5198563..5199609 Delftia acidovorans SPH-1 5750335 YP_001565758.1 CDS Daci_4744 NC_010002.1 5199741 5200499 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1606 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5199741..5200499 Delftia acidovorans SPH-1 5750336 YP_001565759.1 CDS Daci_4745 NC_010002.1 5200653 5201507 R KEGG: bmn:BMA10247_0877 hypothetical protein; hypothetical protein complement(5200653..5201507) Delftia acidovorans SPH-1 5750337 YP_001565760.1 CDS Daci_4746 NC_010002.1 5201529 5203244 R KEGG: aav:Aave_3724 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter complement(5201529..5203244) Delftia acidovorans SPH-1 5750338 YP_001565761.1 CDS Daci_4747 NC_010002.1 5203490 5204455 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: nmu:Nmul_A1827 lipolytic enzyme; alpha/beta hydrolase domain-containing protein 5203490..5204455 Delftia acidovorans SPH-1 5750339 YP_001565762.1 CDS Daci_4748 NC_010002.1 5204515 5205717 D KEGG: nmu:Nmul_A1824 hypothetical protein; hypothetical protein 5204515..5205717 Delftia acidovorans SPH-1 5750340 YP_001565763.1 CDS Daci_4749 NC_010002.1 5205729 5207027 D KEGG: nmu:Nmul_A1825 L-lysine 6-monooxygenase (NADPH); L-lysine 6-monooxygenase 5205729..5207027 Delftia acidovorans SPH-1 5750341 YP_001565764.1 CDS Daci_4750 NC_010002.1 5207240 5207839 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4328 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 5207240..5207839 Delftia acidovorans SPH-1 5750342 YP_001565765.1 CDS Daci_4751 NC_010002.1 5207852 5208886 D PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5207852..5208886 Delftia acidovorans SPH-1 5750343 YP_001565766.1 CDS Daci_4752 NC_010002.1 5208963 5211362 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_2028 ferric siderophore receptor; TonB-dependent siderophore receptor complement(5208963..5211362) Delftia acidovorans SPH-1 5750344 YP_001565767.1 CDS Daci_4753 NC_010002.1 5211544 5230074 R TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein complement(5211544..5230074) Delftia acidovorans SPH-1 5750345 YP_001565768.1 CDS Daci_4754 NC_010002.1 5230074 5240069 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: bpl:BURPS1106A_A2212 non-ribosomal peptide synthase; amino acid adenylation domain-containing protein complement(5230074..5240069) Delftia acidovorans SPH-1 5750346 YP_001565769.1 CDS Daci_4755 NC_010002.1 5240032 5244714 R PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: aav:Aave_3732 beta-ketoacyl synthase; beta-ketoacyl synthase complement(5240032..5244714) Delftia acidovorans SPH-1 5750347 YP_001565770.1 CDS Daci_4756 NC_010002.1 5244714 5250083 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: aav:Aave_3733 amino acid adenylation domain; amino acid adenylation domain-containing protein complement(5244714..5250083) Delftia acidovorans SPH-1 5750348 YP_001565771.1 CDS Daci_4757 NC_010002.1 5250104 5251093 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: aav:Aave_3734 taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA complement(5250104..5251093) Delftia acidovorans SPH-1 5750349 YP_001565772.1 CDS Daci_4758 NC_010002.1 5251090 5251779 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: nmu:Nmul_A1833 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(5251090..5251779) Delftia acidovorans SPH-1 5750350 YP_001565773.1 CDS Daci_4759 NC_010002.1 5251757 5252500 R PFAM: Thioesterase; KEGG: nmu:Nmul_A1834 thioesterase; thioesterase complement(5251757..5252500) Delftia acidovorans SPH-1 5750351 YP_001565774.1 CDS Daci_4760 NC_010002.1 5252506 5252871 R PFAM: MbtH domain protein; KEGG: aav:Aave_3736 MbtH domain protein; MbtH domain-containing protein complement(5252506..5252871) Delftia acidovorans SPH-1 5750352 YP_001565775.1 CDS Daci_4761 NC_010002.1 5252942 5253466 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aav:Aave_3737 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(5252942..5253466) Delftia acidovorans SPH-1 5750353 YP_001565776.1 CDS Daci_4762 NC_010002.1 5254614 5254949 R PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_0297 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(5254614..5254949) Delftia acidovorans SPH-1 5750357 YP_001565777.1 CDS Daci_4763 NC_010002.1 5254966 5258055 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: neu:NE0375 acriflavin resistance protein:heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(5254966..5258055) Delftia acidovorans SPH-1 5750358 YP_001565778.1 CDS Daci_4764 NC_010002.1 5258060 5259277 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_0295 secretion protein HlyD; RND family efflux transporter MFP subunit complement(5258060..5259277) Delftia acidovorans SPH-1 5750359 YP_001565779.1 CDS Daci_4765 NC_010002.1 5259319 5260776 R PFAM: outer membrane efflux protein; KEGG: rso:RS00407 putative outer membrane cation efflux system protein; outer membrane efflux protein complement(5259319..5260776) Delftia acidovorans SPH-1 5750360 YP_001565780.1 CDS Daci_4766 NC_010002.1 5260994 5261398 R hypothetical protein complement(5260994..5261398) Delftia acidovorans SPH-1 5750361 YP_001565781.1 CDS gltX NC_010002.1 5262625 5264031 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(5262625..5264031) Delftia acidovorans SPH-1 5750370 YP_001565782.1 CDS Daci_4768 NC_010002.1 5264028 5265386 R KEGG: ajs:Ajs_2735 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase complement(5264028..5265386) Delftia acidovorans SPH-1 5750371 YP_001565783.1 CDS Daci_4769 NC_010002.1 5265462 5266970 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(5265462..5266970) Delftia acidovorans SPH-1 5750372 YP_001565784.1 CDS Daci_4770 NC_010002.1 5267104 5267595 R PFAM: Colicin V production protein; KEGG: aav:Aave_1862 colicin V production protein; colicin V production protein complement(5267104..5267595) Delftia acidovorans SPH-1 5750373 YP_001565785.1 CDS Daci_4771 NC_010002.1 5267645 5268592 R PFAM: Sporulation domain protein; KEGG: ajs:Ajs_2738 sporulation domain protein; sporulation domain-containing protein complement(5267645..5268592) Delftia acidovorans SPH-1 5750374 YP_001565786.1 CDS Daci_4772 NC_010002.1 5268663 5269985 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ajs:Ajs_2739 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(5268663..5269985) Delftia acidovorans SPH-1 5750375 YP_001565787.1 CDS Daci_4773 NC_010002.1 5270083 5270442 D PFAM: arsenate reductase and related; KEGG: ajs:Ajs_2740 arsenate reductase and related; arsenate reductase-like protein 5270083..5270442 Delftia acidovorans SPH-1 5750376 YP_001565788.1 CDS Daci_4774 NC_010002.1 5270672 5271313 D PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_2741 17 kDa surface antigen; 17 kDa surface antigen 5270672..5271313 Delftia acidovorans SPH-1 5750377 YP_001565789.1 CDS Daci_4775 NC_010002.1 5271441 5271758 D PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein; hypothetical protein 5271441..5271758 Delftia acidovorans SPH-1 5750378 YP_001565790.1 CDS Daci_4776 NC_010002.1 5271877 5273211 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 5271877..5273211 Delftia acidovorans SPH-1 5750379 YP_001565791.1 CDS Daci_4777 NC_010002.1 5273413 5274312 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_2939 probable transcriptional regulator; LysR family transcriptional regulator complement(5273413..5274312) Delftia acidovorans SPH-1 5750380 YP_001565792.1 CDS Daci_4778 NC_010002.1 5274451 5275320 D PFAM: beta-lactamase domain protein; KEGG: hch:HCH_01185 Zn-dependent hydrolase, including glyoxylases; beta-lactamase domain-containing protein 5274451..5275320 Delftia acidovorans SPH-1 5750381 YP_001565793.1 CDS Daci_4779 NC_010002.1 5275419 5275784 D PFAM: SPW repeat; KEGG: pol:Bpro_2330 hypothetical protein; SPW repeat-containing protein 5275419..5275784 Delftia acidovorans SPH-1 5750382 YP_001565794.1 CDS Daci_4780 NC_010002.1 5275865 5276965 R KEGG: aav:Aave_1855 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(5275865..5276965) Delftia acidovorans SPH-1 5750383 YP_001565795.1 CDS Daci_4781 NC_010002.1 5277070 5277555 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 5277070..5277555 Delftia acidovorans SPH-1 5750384 YP_001565796.1 CDS Daci_4782 NC_010002.1 5277590 5278255 D KEGG: aav:Aave_1853 hypothetical protein; hypothetical protein 5277590..5278255 Delftia acidovorans SPH-1 5750385 YP_001565797.1 CDS Daci_4783 NC_010002.1 5278296 5279285 D KEGG: aav:Aave_1852 putative metal dependent phosphohydrolase; putative metal dependent phosphohydrolase 5278296..5279285 Delftia acidovorans SPH-1 5750386 YP_001565798.1 CDS Daci_4784 NC_010002.1 5279331 5281073 R KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(5279331..5281073) Delftia acidovorans SPH-1 5750387 YP_001565799.1 CDS Daci_4785 NC_010002.1 5281070 5282653 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(5281070..5282653) Delftia acidovorans SPH-1 5750388 YP_001565800.1 CDS Daci_4786 NC_010002.1 5282702 5284840 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: acb:A1S_3339 putative ferric siderophore receptor protein; TonB-dependent siderophore receptor complement(5282702..5284840) Delftia acidovorans SPH-1 5750389 YP_001565801.1 CDS Daci_4787 NC_010002.1 5285031 5285249 R PFAM: protein of unknown function DUF350; KEGG: ajs:Ajs_4097 protein of unknown function DUF350; hypothetical protein complement(5285031..5285249) Delftia acidovorans SPH-1 5750390 YP_001565802.1 CDS Daci_4788 NC_010002.1 5285268 5286800 R KEGG: aav:Aave_4739 putative transmembrane protein; putative transmembrane protein complement(5285268..5286800) Delftia acidovorans SPH-1 5750391 YP_001565803.1 CDS Daci_4789 NC_010002.1 5286899 5287579 R PFAM: protein of unknown function DUF205; KEGG: aav:Aave_1851 protein of unknown function DUF205; hypothetical protein complement(5286899..5287579) Delftia acidovorans SPH-1 5750392 YP_001565804.1 CDS Daci_4790 NC_010002.1 5287748 5288242 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ajs:Ajs_2754 YbaK/EbsC protein; ybaK/ebsC protein complement(5287748..5288242) Delftia acidovorans SPH-1 5750393 YP_001565805.1 CDS Daci_4791 NC_010002.1 5288300 5288848 D KEGG: rpa:RPA0928 hypothetical protein; hypothetical protein 5288300..5288848 Delftia acidovorans SPH-1 5750394 YP_001565806.1 CDS Daci_4792 NC_010002.1 5288851 5289066 D PFAM: helix-turn-helix domain protein; KEGG: xau:Xaut_0314 putative transcriptional regulator, XRE family; XRE family transcriptional regulator 5288851..5289066 Delftia acidovorans SPH-1 5750395 YP_001565807.1 CDS Daci_4793 NC_010002.1 5289042 5289686 D KEGG: rfr:Rfer_1530 hypothetical protein; hypothetical protein 5289042..5289686 Delftia acidovorans SPH-1 5750396 YP_001565808.1 CDS Daci_4794 NC_010002.1 5289704 5290780 R PFAM: aldo/keto reductase; KEGG: aav:Aave_1849 aldo/keto reductase; aldo/keto reductase complement(5289704..5290780) Delftia acidovorans SPH-1 5750397 YP_001565809.1 CDS Daci_4795 NC_010002.1 5290870 5291964 R KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(5290870..5291964) Delftia acidovorans SPH-1 5750398 YP_001565810.1 CDS Daci_4796 NC_010002.1 5291986 5293410 R PFAM: amino acid permease-associated region; KEGG: pau:PA14_53050 aromatic amino acid transport protein AroP2; amino acid permease-associated protein complement(5291986..5293410) Delftia acidovorans SPH-1 5750399 YP_001565811.1 CDS Daci_4797 NC_010002.1 5293731 5294381 D PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_5654 transcriptional regulator, TetR family; TetR family transcriptional regulator 5293731..5294381 Delftia acidovorans SPH-1 5750400 YP_001565812.1 CDS Daci_4798 NC_010002.1 5294351 5295265 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpa:BPP2057 LysR-family transcriptional regulator; LysR family transcriptional regulator complement(5294351..5295265) Delftia acidovorans SPH-1 5750401 YP_001565813.1 CDS Daci_4799 NC_010002.1 5295349 5296440 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bbr:BB1451 probable ATP-binding component of ABC transporter; ABC transporter-like protein complement(5295349..5296440) Delftia acidovorans SPH-1 5750402 YP_001565814.1 CDS Daci_4800 NC_010002.1 5296447 5298186 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1452 probable permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein complement(5296447..5298186) Delftia acidovorans SPH-1 5750403 YP_001565815.1 CDS Daci_4801 NC_010002.1 5298272 5299600 R PFAM: extracellular solute-binding protein family 1; KEGG: bbr:BB1453 putative regulatory lipoprotein; extracellular solute-binding protein complement(5298272..5299600) Delftia acidovorans SPH-1 5750404 YP_001565816.1 CDS Daci_4802 NC_010002.1 5299802 5300116 D KEGG: pol:Bpro_1534 hypothetical protein; hypothetical protein 5299802..5300116 Delftia acidovorans SPH-1 5750405 YP_001565817.1 CDS Daci_4803 NC_010002.1 5300128 5300514 D KEGG: bbr:BB3159 hypothetical protein; hypothetical protein 5300128..5300514 Delftia acidovorans SPH-1 5750406 YP_001565818.1 CDS Daci_4804 NC_010002.1 5300618 5301595 D PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_2756 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 5300618..5301595 Delftia acidovorans SPH-1 5750407 YP_001565819.1 CDS Daci_4805 NC_010002.1 5301641 5304175 R PFAM: peptidase S45 penicillin amidase; KEGG: pol:Bpro_2452 penicillin amidase; peptidase S45 penicillin amidase complement(5301641..5304175) Delftia acidovorans SPH-1 5750408 YP_001565820.1 CDS Daci_4806 NC_010002.1 5304361 5304741 D hypothetical protein 5304361..5304741 Delftia acidovorans SPH-1 5750409 YP_001565821.1 CDS Daci_4807 NC_010002.1 5304895 5305644 R PFAM: fatty acid hydroxylase; KEGG: cvi:CV_2371 hypothetical protein; fatty acid hydroxylase complement(5304895..5305644) Delftia acidovorans SPH-1 5750410 YP_001565822.1 CDS Daci_4808 NC_010002.1 5305664 5306743 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: ajs:Ajs_2281 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase complement(5305664..5306743) Delftia acidovorans SPH-1 5750411 YP_001565823.1 CDS Daci_4809 NC_010002.1 5306967 5308394 R PFAM: alpha/beta hydrolase fold; CMP/dCMP deaminase zinc-binding; KEGG: aav:Aave_3082 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase complement(5306967..5308394) Delftia acidovorans SPH-1 5750412 YP_001565824.1 CDS Daci_4810 NC_010002.1 5308363 5309631 R PFAM: Extracellular ligand-binding receptor; KEGG: aav:Aave_3084 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(5308363..5309631) Delftia acidovorans SPH-1 5750413 YP_001565825.1 CDS Daci_4811 NC_010002.1 5310135 5312141 D PFAM: peptidase U32; KEGG: ajs:Ajs_2285 peptidase U32; peptidase U32 5310135..5312141 Delftia acidovorans SPH-1 5750414 YP_001565826.1 CDS Daci_4812 NC_010002.1 5312105 5312386 R KEGG: xcb:XC_1763 hypothetical protein; hypothetical protein complement(5312105..5312386) Delftia acidovorans SPH-1 5750415 YP_001565827.1 CDS Daci_4813 NC_010002.1 5312397 5314739 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: aav:Aave_3827 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase subunit alpha complement(5312397..5314739) Delftia acidovorans SPH-1 5750416 YP_001565828.1 CDS Daci_4814 NC_010002.1 5314868 5315326 D PFAM: GCN5-related N-acetyltransferase; KEGG: azo:azo3709 hypothetical protein; N-acetyltransferase GCN5 5314868..5315326 Delftia acidovorans SPH-1 5750417 YP_001565829.1 CDS Daci_4815 NC_010002.1 5315339 5318113 R PFAM: regulatory protein LuxR; KEGG: rfr:Rfer_0996 ATP-dependent transcriptional regulator, MalT-like, LuxR family; ATP-dependent transcription regulator LuxR complement(5315339..5318113) Delftia acidovorans SPH-1 5750418 YP_001565830.1 CDS Daci_4816 NC_010002.1 5318296 5319078 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5318296..5319078 Delftia acidovorans SPH-1 5750419 YP_001565831.1 CDS Daci_4817 NC_010002.1 5319212 5320396 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5319212..5320396 Delftia acidovorans SPH-1 5750420 YP_001565832.1 CDS Daci_4818 NC_010002.1 5320466 5321290 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1001 ABC transporter related; ABC transporter-like protein 5320466..5321290 Delftia acidovorans SPH-1 5750421 YP_001565833.1 CDS Daci_4819 NC_010002.1 5321274 5321999 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1002 ABC transporter related; ABC transporter-like protein 5321274..5321999 Delftia acidovorans SPH-1 5750422 YP_001565834.1 CDS Daci_4820 NC_010002.1 5322005 5322877 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1003 inner-membrane translocator; inner-membrane translocator 5322005..5322877 Delftia acidovorans SPH-1 5750423 YP_001565835.1 CDS Daci_4821 NC_010002.1 5322881 5324083 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1004 inner-membrane translocator; inner-membrane translocator 5322881..5324083 Delftia acidovorans SPH-1 5750424 YP_001565836.1 CDS Daci_4822 NC_010002.1 5324113 5324970 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3255 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 5324113..5324970 Delftia acidovorans SPH-1 5750425 YP_001565837.1 CDS Daci_4823 NC_010002.1 5325009 5326322 D KEGG: rfr:Rfer_1005 extracellular ligand-binding receptor; extracellular ligand-binding receptor 5325009..5326322 Delftia acidovorans SPH-1 5750426 YP_001565838.1 CDS Daci_4824 NC_010002.1 5326357 5328012 D PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_1006 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 5326357..5328012 Delftia acidovorans SPH-1 5750427 YP_001565839.1 CDS Daci_4825 NC_010002.1 5328025 5329107 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_5435 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 5328025..5329107 Delftia acidovorans SPH-1 5750428 YP_001565840.1 CDS Daci_4826 NC_010002.1 5329117 5330679 D PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5438 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 5329117..5330679 Delftia acidovorans SPH-1 5750429 YP_001565841.1 CDS Daci_4827 NC_010002.1 5330705 5331853 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rfr:Rfer_0994 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 5330705..5331853 Delftia acidovorans SPH-1 5750430 YP_001565842.1 CDS Daci_4828 NC_010002.1 5331947 5332837 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein; short-chain dehydrogenase/reductase SDR 5331947..5332837 Delftia acidovorans SPH-1 5750431 YP_001565843.1 CDS Daci_4829 NC_010002.1 5332855 5333667 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 5332855..5333667 Delftia acidovorans SPH-1 5750432 YP_001565844.1 CDS Daci_4830 NC_010002.1 5333928 5334812 D PFAM: 3'-5' exonuclease; KEGG: rfr:Rfer_2827 3'-5' exonuclease; 3'-5' exonuclease 5333928..5334812 Delftia acidovorans SPH-1 5750433 YP_001565845.1 CDS Daci_4831 NC_010002.1 5334809 5335987 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_A0406 hypothetical protein with GGDEF domain; diguanylate cyclase complement(5334809..5335987) Delftia acidovorans SPH-1 5750434 YP_001565846.1 CDS Daci_4832 NC_010002.1 5336243 5337592 D KEGG: ajs:Ajs_2286 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 5336243..5337592 Delftia acidovorans SPH-1 5750435 YP_001565847.1 CDS Daci_4833 NC_010002.1 5337656 5338708 R hypothetical protein complement(5337656..5338708) Delftia acidovorans SPH-1 5750436 YP_001565848.1 CDS Daci_4834 NC_010002.1 5338795 5340087 R PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323; hypothetical protein complement(5338795..5340087) Delftia acidovorans SPH-1 5750437 YP_001565849.1 CDS Daci_4835 NC_010002.1 5340080 5341318 R KEGG: aav:Aave_3091 putative uncharacterized conserved protein; hypothetical protein complement(5340080..5341318) Delftia acidovorans SPH-1 5750438 YP_001565850.1 CDS Daci_4836 NC_010002.1 5341527 5342141 R PFAM: OmpW family protein; OmpF family protein; KEGG: ajs:Ajs_2289 OmpW family protein; OmpW family protein complement(5341527..5342141) Delftia acidovorans SPH-1 5750439 YP_001565851.1 CDS Daci_4837 NC_010002.1 5342666 5343286 D PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_0259 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 5342666..5343286 Delftia acidovorans SPH-1 5750440 YP_001565852.1 CDS Daci_4838 NC_010002.1 5343323 5343658 R TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: rfr:Rfer_1750 hypothetical protein; addiction module antitoxin complement(5343323..5343658) Delftia acidovorans SPH-1 5750441 YP_001565853.1 CDS Daci_4839 NC_010002.1 5343658 5343954 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; addiction module antitoxin complement(5343658..5343954) Delftia acidovorans SPH-1 5750442 YP_001565854.1 CDS Daci_4840 NC_010002.1 5344217 5344471 D hypothetical protein 5344217..5344471 Delftia acidovorans SPH-1 5750443 YP_001565855.1 CDS Daci_4841 NC_010002.1 5344509 5345315 R PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(5344509..5345315) Delftia acidovorans SPH-1 5750444 YP_001565856.1 CDS Daci_4842 NC_010002.1 5345348 5346190 R hypothetical protein complement(5345348..5346190) Delftia acidovorans SPH-1 5750445 YP_001565857.1 CDS Daci_4843 NC_010002.1 5346264 5347241 R PFAM: protein of unknown function DUF808; KEGG: ajs:Ajs_2290 protein of unknown function DUF808; hypothetical protein complement(5346264..5347241) Delftia acidovorans SPH-1 5750446 YP_001565858.1 CDS Daci_4844 NC_010002.1 5347370 5348602 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein; VWA containing CoxE family protein complement(5347370..5348602) Delftia acidovorans SPH-1 5750447 YP_001565859.1 CDS Daci_4845 NC_010002.1 5348599 5351163 R KEGG: pna:Pnap_3740 hypothetical protein; hypothetical protein complement(5348599..5351163) Delftia acidovorans SPH-1 5750448 YP_001565860.1 CDS Daci_4846 NC_010002.1 5351215 5352297 R PFAM: ATPase associated with various cellular activities AAA_5; KEGG: pna:Pnap_3739 ATPase associated with various cellular activities, AAA_5; ATPase complement(5351215..5352297) Delftia acidovorans SPH-1 5750449 YP_001565861.1 CDS Daci_4847 NC_010002.1 5352368 5354131 R KEGG: pna:Pnap_3738 hypothetical protein; hypothetical protein complement(5352368..5354131) Delftia acidovorans SPH-1 5750450 YP_001565862.1 CDS Daci_4848 NC_010002.1 5354128 5355573 R PFAM: zinc finger SWIM domain protein; KEGG: pna:Pnap_3737 zinc finger, SWIM domain protein; zinc finger SWIM domain-containing protein complement(5354128..5355573) Delftia acidovorans SPH-1 5750451 YP_001565863.1 CDS Daci_4849 NC_010002.1 5356050 5357369 D PFAM: Radical SAM domain protein; KEGG: aav:Aave_4594 radical SAM domain protein; radical SAM domain-containing protein 5356050..5357369 Delftia acidovorans SPH-1 5750452 YP_001565864.1 CDS Daci_4850 NC_010002.1 5357385 5358224 D KEGG: aav:Aave_4595 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein 5357385..5358224 Delftia acidovorans SPH-1 5750453 YP_001565865.1 CDS Daci_4851 NC_010002.1 5358303 5362331 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(5358303..5362331) Delftia acidovorans SPH-1 5750454 YP_001565866.1 CDS Daci_4852 NC_010002.1 5362515 5363330 D KEGG: ajs:Ajs_2293 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 5362515..5363330 Delftia acidovorans SPH-1 5750455 YP_001565867.1 CDS Daci_4853 NC_010002.1 5363366 5366053 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 5363366..5366053 Delftia acidovorans SPH-1 5750456 YP_001565868.1 CDS Daci_4854 NC_010002.1 5366136 5367629 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pfo:Pfl_1871 xanthine/uracil permease; xanthine permease complement(5366136..5367629) Delftia acidovorans SPH-1 5750457 YP_001565869.1 CDS Daci_4855 NC_010002.1 5367919 5368458 R KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(5367919..5368458) Delftia acidovorans SPH-1 5750458 YP_001565870.1 CDS Daci_4856 NC_010002.1 5368559 5369116 D PFAM: protein of unknown function DUF454; KEGG: aav:Aave_3103 protein of unknown function DUF454; hypothetical protein 5368559..5369116 Delftia acidovorans SPH-1 5750459 YP_001565871.1 CDS Daci_4857 NC_010002.1 5369574 5369900 R KEGG: pna:Pnap_2819 hypothetical protein; hypothetical protein complement(5369574..5369900) Delftia acidovorans SPH-1 5750463 YP_001565872.1 CDS aat NC_010002.1 5370073 5370921 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 5370073..5370921 Delftia acidovorans SPH-1 5750464 YP_001565873.1 CDS Daci_4859 NC_010002.1 5370918 5371667 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 5370918..5371667 Delftia acidovorans SPH-1 5750465 YP_001565874.1 CDS Daci_4860 NC_010002.1 5371796 5372620 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ajs:Ajs_1776 regulatory proteins, IclR; IclR family transcriptional regulator 5371796..5372620 Delftia acidovorans SPH-1 5750466 YP_001565875.1 CDS Daci_4861 NC_010002.1 5372732 5373829 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: aav:Aave_3107 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 complement(5372732..5373829) Delftia acidovorans SPH-1 5750467 YP_001565876.1 CDS Daci_4862 NC_010002.1 5373949 5375487 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(5373949..5375487) Delftia acidovorans SPH-1 5750468 YP_001565877.1 CDS Daci_4863 NC_010002.1 5375587 5377278 R KEGG: ajs:Ajs_1773 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(5375587..5377278) Delftia acidovorans SPH-1 5750469 YP_001565878.1 CDS Daci_4864 NC_010002.1 5377505 5378338 R KEGG: ajs:Ajs_1772 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(5377505..5378338) Delftia acidovorans SPH-1 5750470 YP_001565879.1 CDS Daci_4865 NC_010002.1 5378549 5379565 R KEGG: aav:Aave_3110 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; CoA-binding domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase complement(5378549..5379565) Delftia acidovorans SPH-1 5750471 YP_001565880.1 CDS ilvH NC_010002.1 5379638 5380129 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(5379638..5380129) Delftia acidovorans SPH-1 5750472 YP_001565881.1 CDS Daci_4867 NC_010002.1 5380284 5382065 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit complement(5380284..5382065) Delftia acidovorans SPH-1 5750473 YP_001565882.1 CDS Daci_4868 NC_010002.1 5382202 5382915 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aav:Aave_3113 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 5382202..5382915 Delftia acidovorans SPH-1 5750474 YP_001565883.1 CDS Daci_4869 NC_010002.1 5382912 5383370 D KEGG: ajs:Ajs_1767 putative transmembrane protein; putative transmembrane protein 5382912..5383370 Delftia acidovorans SPH-1 5750475 YP_001565884.1 CDS Daci_4870 NC_010002.1 5383391 5384242 D KEGG: ajs:Ajs_1766 putative transmembrane protein; putative transmembrane protein 5383391..5384242 Delftia acidovorans SPH-1 5750476 YP_001565885.1 CDS Daci_4871 NC_010002.1 5384280 5384825 D PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain containing protein; RDD domain-containing protein 5384280..5384825 Delftia acidovorans SPH-1 5750477 YP_001565886.1 CDS Daci_4872 NC_010002.1 5384866 5385279 D PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase 5384866..5385279 Delftia acidovorans SPH-1 5750478 YP_001565887.1 CDS Daci_4873 NC_010002.1 5385276 5385869 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1763 conserved hypothetical protein 730; hypothetical protein 5385276..5385869 Delftia acidovorans SPH-1 5750479 YP_001565888.1 CDS Daci_4874 NC_010002.1 5385971 5386309 R PFAM: nitrogen regulatory protein P-II; KEGG: ajs:Ajs_1762 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(5385971..5386309) Delftia acidovorans SPH-1 5750480 YP_001565889.1 CDS Daci_4875 NC_010002.1 5386500 5388179 R KEGG: aav:Aave_3120 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase complement(5386500..5388179) Delftia acidovorans SPH-1 5750481 YP_001565890.1 CDS Daci_4876 NC_010002.1 5388236 5389459 D PFAM: protein of unknown function DUF482; KEGG: vei:Veis_1736 protein of unknown function DUF482; hypothetical protein 5388236..5389459 Delftia acidovorans SPH-1 5750482 YP_001565891.1 CDS Daci_4877 NC_010002.1 5389463 5391307 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5389463..5391307) Delftia acidovorans SPH-1 5750483 YP_001565892.1 CDS Daci_4878 NC_010002.1 5391799 5393568 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mpt:Mpe_A0750 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5391799..5393568) Delftia acidovorans SPH-1 5750484 YP_001565893.1 CDS Daci_4879 NC_010002.1 5393750 5394277 R PFAM: Inorganic pyrophosphatase; KEGG: vei:Veis_3002 inorganic diphosphatase; inorganic diphosphatase complement(5393750..5394277) Delftia acidovorans SPH-1 5750485 YP_001565894.1 CDS Daci_4880 NC_010002.1 5394431 5394973 R PFAM: protein of unknown function DUF962; KEGG: aav:Aave_2666 protein of unknown function DUF962; hypothetical protein complement(5394431..5394973) Delftia acidovorans SPH-1 5750486 YP_001565895.1 CDS Daci_4881 NC_010002.1 5395036 5395872 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: aav:Aave_2665 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 5395036..5395872 Delftia acidovorans SPH-1 5750487 YP_001565896.1 CDS Daci_4882 NC_010002.1 5395977 5397410 D PFAM: Aldehyde Dehydrogenase_; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 5395977..5397410 Delftia acidovorans SPH-1 5750488 YP_001565897.1 CDS Daci_4883 NC_010002.1 5397420 5398094 D KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein 5397420..5398094 Delftia acidovorans SPH-1 5750489 YP_001565898.1 CDS fabG NC_010002.1 5398119 5398904 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 5398119..5398904 Delftia acidovorans SPH-1 5750490 YP_001565899.1 CDS moaA NC_010002.1 5398970 5400106 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 5398970..5400106 Delftia acidovorans SPH-1 5750491 YP_001565900.1 CDS Daci_4886 NC_010002.1 5400194 5400889 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: ajs:Ajs_1748 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 5400194..5400889 Delftia acidovorans SPH-1 5750492 YP_001565901.1 CDS Daci_4887 NC_010002.1 5400942 5402288 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ajs:Ajs_1747 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 5400942..5402288 Delftia acidovorans SPH-1 5750493 YP_001565902.1 CDS Daci_4888 NC_010002.1 5402301 5402633 D PFAM: Thioredoxin domain; KEGG: ajs:Ajs_1746 thioredoxin domain; thioredoxin domain-containing protein 5402301..5402633 Delftia acidovorans SPH-1 5750494 YP_001565903.1 CDS Daci_4889 NC_010002.1 5402671 5403411 D PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C1026 transcriptional regulator, TetR family; TetR family transcriptional regulator 5402671..5403411 Delftia acidovorans SPH-1 5750495 YP_001565904.1 CDS Daci_4890 NC_010002.1 5403465 5404457 R PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3683 twin-arginine translocation pathway signal; hypothetical protein complement(5403465..5404457) Delftia acidovorans SPH-1 5750496 YP_001565905.1 CDS Daci_4891 NC_010002.1 5404496 5405317 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: vha:VIBHAR_02787 hypothetical protein; taurine dioxygenase complement(5404496..5405317) Delftia acidovorans SPH-1 5750497 YP_001565906.1 CDS Daci_4892 NC_010002.1 5405358 5407607 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_1075 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(5405358..5407607) Delftia acidovorans SPH-1 5750498 YP_001565907.1 CDS Daci_4893 NC_010002.1 5407585 5408031 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bam:Bamb_1074 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(5407585..5408031) Delftia acidovorans SPH-1 5750499 YP_001565908.1 CDS Daci_4894 NC_010002.1 5408083 5409168 R PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin); porin complement(5408083..5409168) Delftia acidovorans SPH-1 5750500 YP_001565909.1 CDS rnhA NC_010002.1 5409395 5409841 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(5409395..5409841) Delftia acidovorans SPH-1 5750501 YP_001565910.1 CDS Daci_4896 NC_010002.1 5409838 5410575 R PFAM: Methyltransferase type 11; KEGG: vei:Veis_0592 methyltransferase type 11; type 11 methyltransferase complement(5409838..5410575) Delftia acidovorans SPH-1 5750502 YP_001565911.1 CDS Daci_4897 NC_010002.1 5410667 5411440 D KEGG: vei:Veis_0591 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 5410667..5411440 Delftia acidovorans SPH-1 5750503 YP_001565912.1 CDS Daci_4898 NC_010002.1 5411440 5412975 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 5411440..5412975 Delftia acidovorans SPH-1 5750504 YP_001565913.1 CDS Daci_4899 NC_010002.1 5413052 5414137 R KEGG: rfr:Rfer_1460 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(5413052..5414137) Delftia acidovorans SPH-1 5750505 YP_001565914.1 CDS Daci_4900 NC_010002.1 5414233 5414664 R KEGG: ajs:Ajs_2347 membrane protein-like protein; membrane protein complement(5414233..5414664) Delftia acidovorans SPH-1 5750506 YP_001565915.1 CDS recR NC_010002.1 5414710 5415300 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(5414710..5415300) Delftia acidovorans SPH-1 5750507 YP_001565916.1 CDS Daci_4902 NC_010002.1 5415446 5415778 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2349 conserved hypothetical protein 103; hypothetical protein complement(5415446..5415778) Delftia acidovorans SPH-1 5750508 YP_001565917.1 CDS Daci_4903 NC_010002.1 5415826 5418021 R KEGG: ajs:Ajs_2350 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(5415826..5418021) Delftia acidovorans SPH-1 5750509 YP_001565918.1 CDS Daci_4904 NC_010002.1 5418284 5419660 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2353 HI0933 family protein; hypothetical protein complement(5418284..5419660) Delftia acidovorans SPH-1 5750511 YP_001565919.1 CDS Daci_4905 NC_010002.1 5419932 5420264 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: aav:Aave_2639 thioredoxin; thioredoxin 5419932..5420264 Delftia acidovorans SPH-1 5750512 YP_001565920.1 CDS rho NC_010002.1 5420531 5421793 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5420531..5421793 Delftia acidovorans SPH-1 5750513 YP_001565921.1 CDS Daci_4907 NC_010002.1 5421867 5423276 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpd:BURPS668_A1776 coa transferase, CaiB/BaiF family; L-carnitine dehydratase/bile acid-inducible protein F complement(5421867..5423276) Delftia acidovorans SPH-1 5750514 YP_001565922.1 CDS Daci_4908 NC_010002.1 5423378 5424571 D PFAM: regulatory protein MerR; Citrate synthase; KEGG: bur:Bcep18194_B1148 citrate synthase; citrate synthase 5423378..5424571 Delftia acidovorans SPH-1 5750515 YP_001565923.1 CDS Daci_4909 NC_010002.1 5424686 5424931 D PFAM: ribosomal protein L31; KEGG: ajs:Ajs_2363 ribosomal protein L31; 50S ribosomal protein L31 5424686..5424931 Delftia acidovorans SPH-1 5750516 YP_001565924.1 CDS Daci_4910 NC_010002.1 5425087 5426826 D KEGG: aav:Aave_2634 putative inner membrane transmembrane protein; putative inner membrane transmembrane protein 5425087..5426826 Delftia acidovorans SPH-1 5750517 YP_001565925.1 CDS Daci_4911 NC_010002.1 5426823 5428190 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: aav:Aave_2633 MATE efflux family protein; MATE efflux family protein 5426823..5428190 Delftia acidovorans SPH-1 5750518 YP_001565926.1 CDS Daci_4912 NC_010002.1 5428221 5429615 R KEGG: aav:Aave_2632 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(5428221..5429615) Delftia acidovorans SPH-1 5750519 YP_001565927.1 CDS Daci_4913 NC_010002.1 5429734 5430429 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_2367 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(5429734..5430429) Delftia acidovorans SPH-1 5750520 YP_001565928.1 CDS Daci_4914 NC_010002.1 5430450 5431151 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: aav:Aave_2630 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(5430450..5431151) Delftia acidovorans SPH-1 5750521 YP_001565929.1 CDS Daci_4915 NC_010002.1 5431165 5431947 R KEGG: ajs:Ajs_2369 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(5431165..5431947) Delftia acidovorans SPH-1 5750522 YP_001565930.1 CDS pstA NC_010002.1 5431986 5432870 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(5431986..5432870) Delftia acidovorans SPH-1 5750523 YP_001565931.1 CDS Daci_4917 NC_010002.1 5432867 5433805 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2627 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease complement(5432867..5433805) Delftia acidovorans SPH-1 5750524 YP_001565932.1 CDS Daci_4918 NC_010002.1 5433977 5435017 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_2372 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein complement(5433977..5435017) Delftia acidovorans SPH-1 5750525 YP_001565933.1 CDS Daci_4919 NC_010002.1 5435263 5436747 D PFAM: Ppx/GppA phosphatase; KEGG: aav:Aave_2625 Ppx/GppA phosphatase; Ppx/GppA phosphatase 5435263..5436747 Delftia acidovorans SPH-1 5750526 YP_001565934.1 CDS Daci_4920 NC_010002.1 5436818 5439268 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(5436818..5439268) Delftia acidovorans SPH-1 5750527 YP_001565935.1 CDS Daci_4921 NC_010002.1 5439481 5440461 D PFAM: Ppx/GppA phosphatase; KEGG: pna:Pnap_2209 Ppx/GppA phosphatase; Ppx/GppA phosphatase 5439481..5440461 Delftia acidovorans SPH-1 5750528 YP_001565936.1 CDS Daci_4922 NC_010002.1 5440581 5442434 D KEGG: aav:Aave_2620 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5440581..5442434 Delftia acidovorans SPH-1 5750529 YP_001565937.1 CDS glmM NC_010002.1 5442543 5443886 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(5442543..5443886) Delftia acidovorans SPH-1 5750530 YP_001565938.1 CDS Daci_4924 NC_010002.1 5443903 5444739 R KEGG: ajs:Ajs_2382 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(5443903..5444739) Delftia acidovorans SPH-1 5750531 YP_001565939.1 CDS Daci_4925 NC_010002.1 5444882 5446804 R KEGG: ajs:Ajs_2383 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(5444882..5446804) Delftia acidovorans SPH-1 5750532 YP_001565940.1 CDS Daci_4926 NC_010002.1 5446975 5447628 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_2384 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(5446975..5447628) Delftia acidovorans SPH-1 5750533 YP_001565941.1 CDS Daci_4927 NC_010002.1 5447660 5448133 D PFAM: protein of unknown function UPF0044; KEGG: ajs:Ajs_2385 protein of unknown function UPF0044; hypothetical protein 5447660..5448133 Delftia acidovorans SPH-1 5750534 YP_001565942.1 CDS Daci_4928 NC_010002.1 5448147 5448941 D KEGG: vei:Veis_0214 hypothetical protein; hypothetical protein 5448147..5448941 Delftia acidovorans SPH-1 5750535 YP_001565943.1 CDS Daci_4929 NC_010002.1 5449019 5449462 R KEGG: ajs:Ajs_2388 hypothetical protein; hypothetical protein complement(5449019..5449462) Delftia acidovorans SPH-1 5750536 YP_001565944.1 CDS Daci_4930 NC_010002.1 5449507 5449983 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_2389 transcription elongation factor GreA; transcription elongation factor GreA complement(5449507..5449983) Delftia acidovorans SPH-1 5750537 YP_001565945.1 CDS Daci_4931 NC_010002.1 5450238 5453396 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: ajs:Ajs_2390 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit complement(5450238..5453396) Delftia acidovorans SPH-1 5750538 YP_001565946.1 CDS Daci_4932 NC_010002.1 5453479 5454645 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(5453479..5454645) Delftia acidovorans SPH-1 5750539 YP_001565947.1 CDS Daci_4933 NC_010002.1 5454826 5455617 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aav:Aave_1838 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(5454826..5455617) Delftia acidovorans SPH-1 5750540 YP_001565948.1 CDS rnhB NC_010002.1 5455680 5456387 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(5455680..5456387) Delftia acidovorans SPH-1 5750541 YP_001565949.1 CDS lpxB NC_010002.1 5456350 5457540 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(5456350..5457540) Delftia acidovorans SPH-1 5750542 YP_001565950.1 CDS Daci_4936 NC_010002.1 5457562 5458359 R TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase complement(5457562..5458359) Delftia acidovorans SPH-1 5750543 YP_001565951.1 CDS fabZ NC_010002.1 5458367 5458807 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(5458367..5458807) Delftia acidovorans SPH-1 5750544 YP_001565952.1 CDS lpxD NC_010002.1 5458804 5459811 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(5458804..5459811) Delftia acidovorans SPH-1 5750545 YP_001565953.1 CDS Daci_4939 NC_010002.1 5459835 5460344 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: aav:Aave_1832 outer membrane chaperone Skp (OmpH); outer membrane chaperone OmpH complement(5459835..5460344) Delftia acidovorans SPH-1 5750546 YP_001565954.1 CDS Daci_4940 NC_010002.1 5460344 5462641 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ajs:Ajs_2577 surface antigen (D15); outer membrane protein assembly complex protein YaeT complement(5460344..5462641) Delftia acidovorans SPH-1 5750547 YP_001565955.1 CDS Daci_4941 NC_010002.1 5462687 5464057 R KEGG: ajs:Ajs_2578 putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(5462687..5464057) Delftia acidovorans SPH-1 5750548 YP_001565956.1 CDS Daci_4942 NC_010002.1 5464140 5465318 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(5464140..5465318) Delftia acidovorans SPH-1 5750549 YP_001565957.1 CDS Daci_4943 NC_010002.1 5465315 5466169 R PFAM: phosphatidate cytidylyltransferase; KEGG: ajs:Ajs_2580 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(5465315..5466169) Delftia acidovorans SPH-1 5750550 YP_001565958.1 CDS Daci_4944 NC_010002.1 5466183 5466929 R KEGG: aav:Aave_1827 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(5466183..5466929) Delftia acidovorans SPH-1 5750551 YP_001565959.1 CDS frr NC_010002.1 5466965 5467525 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(5466965..5467525) Delftia acidovorans SPH-1 5750552 YP_001565960.1 CDS pyrH NC_010002.1 5467569 5468291 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(5467569..5468291) Delftia acidovorans SPH-1 5750553 YP_001565961.1 CDS tsf NC_010002.1 5468356 5469252 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(5468356..5469252) Delftia acidovorans SPH-1 5750554 YP_001565962.1 CDS rpsB NC_010002.1 5469366 5470118 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(5469366..5470118) Delftia acidovorans SPH-1 5750555 YP_001565963.1 CDS Daci_4949 NC_010002.1 5470488 5471759 D PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 5470488..5471759 Delftia acidovorans SPH-1 5750556 YP_001565964.1 CDS Daci_4950 NC_010002.1 5471803 5473380 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: aav:Aave_1821 carbohydrate kinase, YjeF related protein; carbohydrate kinase 5471803..5473380 Delftia acidovorans SPH-1 5750557 YP_001565965.1 CDS Daci_4951 NC_010002.1 5473387 5475984 R KEGG: aav:Aave_2988 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R complement(5473387..5475984) Delftia acidovorans SPH-1 5750558 YP_001565966.1 CDS Daci_4952 NC_010002.1 5476952 5479606 R KEGG: aav:Aave_2989 hypothetical protein; hypothetical protein complement(5476952..5479606) Delftia acidovorans SPH-1 5750563 YP_001565967.1 CDS Daci_4953 NC_010002.1 5479734 5483579 R PFAM: protein of unknown function DUF748; KEGG: ajs:Ajs_1662 protein of unknown function DUF748; hypothetical protein complement(5479734..5483579) Delftia acidovorans SPH-1 5750564 YP_001565968.1 CDS Daci_4954 NC_010002.1 5484320 5485231 D PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_2991 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 5484320..5485231 Delftia acidovorans SPH-1 5750565 YP_001565969.1 CDS Daci_4955 NC_010002.1 5485578 5486825 D PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aav:Aave_2992 glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 5485578..5486825 Delftia acidovorans SPH-1 5750566 YP_001565970.1 CDS nrdR NC_010002.1 5486848 5487303 D PFAM: ATP-cone domain protein; KEGG: aav:Aave_2993 ATP-cone domain protein; transcriptional regulator NrdR 5486848..5487303 Delftia acidovorans SPH-1 5750567 YP_001565971.1 CDS Daci_4957 NC_010002.1 5487369 5488538 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(5487369..5488538) Delftia acidovorans SPH-1 5750568 YP_001565972.1 CDS Daci_4958 NC_010002.1 5488666 5489163 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psb:Psyr_2213 helix-turn-helix, AraC type; AraC family transcriptional regulator 5488666..5489163 Delftia acidovorans SPH-1 5750569 YP_001565973.1 CDS Daci_4959 NC_010002.1 5489313 5489765 R PFAM: CBS domain containing protein; KEGG: ajs:Ajs_1657 putative transcriptional regulator, XRE family; hypothetical protein complement(5489313..5489765) Delftia acidovorans SPH-1 5750570 YP_001565974.1 CDS Daci_4960 NC_010002.1 5489872 5491170 D catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 5489872..5491170 Delftia acidovorans SPH-1 5750571 YP_001565975.1 CDS Daci_4961 NC_010002.1 5491193 5492002 D PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 5491193..5492002 Delftia acidovorans SPH-1 5750572 YP_001565976.1 CDS Daci_4962 NC_010002.1 5492039 5493514 R PFAM: Acetamidase/Formamidase; KEGG: mpt:Mpe_A3600 hypothetical protein; acetamidase/formamidase complement(5492039..5493514) Delftia acidovorans SPH-1 5750573 YP_001565977.1 CDS Daci_4963 NC_010002.1 5493675 5496107 D PFAM: helix-turn-helix- domain containing protein AraC type; Acetamidase/Formamidase; KEGG: mpt:Mpe_A3599 transcriptional regulatory protein; AraC family transcriptional regulator 5493675..5496107 Delftia acidovorans SPH-1 5750574 YP_001565978.1 CDS Daci_4964 NC_010002.1 5496121 5496948 R PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_3718 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(5496121..5496948) Delftia acidovorans SPH-1 5750575 YP_001565979.1 CDS Daci_4965 NC_010002.1 5497167 5497520 D KEGG: reh:H16_A1311 predicted membrane protein; membrane protein 5497167..5497520 Delftia acidovorans SPH-1 5750576 YP_001565980.1 CDS Daci_4966 NC_010002.1 5497535 5498881 R PFAM: ribonuclease BN; KEGG: vei:Veis_3782 putative ribonuclease BN; ribonuclease BN complement(5497535..5498881) Delftia acidovorans SPH-1 5750577 YP_001565981.1 CDS Daci_4967 NC_010002.1 5498947 5499387 D KEGG: ajs:Ajs_1199 membrane protein-like protein; membrane protein 5498947..5499387 Delftia acidovorans SPH-1 5750578 YP_001565982.1 CDS Daci_4968 NC_010002.1 5499431 5500861 D PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_1198 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 5499431..5500861 Delftia acidovorans SPH-1 5750579 YP_001565983.1 CDS Daci_4969 NC_010002.1 5500940 5501521 R KEGG: aav:Aave_1451 hypothetical protein; hypothetical protein complement(5500940..5501521) Delftia acidovorans SPH-1 5750580 YP_001565984.1 CDS Daci_4970 NC_010002.1 5501697 5502521 D PFAM: thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; thymidylate synthase 5501697..5502521 Delftia acidovorans SPH-1 5750581 YP_001565985.1 CDS Daci_4971 NC_010002.1 5502543 5503043 D PFAM: dihydrofolate reductase region; KEGG: ajs:Ajs_1195 dihydrofolate reductase; dihydrofolate reductase 5502543..5503043 Delftia acidovorans SPH-1 5750582 YP_001565986.1 CDS Daci_4972 NC_010002.1 5503139 5504221 D PFAM: metallophosphoesterase; KEGG: sma:SAV2323 putative serine/threonine protein phosphatase; metallophosphoesterase 5503139..5504221 Delftia acidovorans SPH-1 5750583 YP_001565987.1 CDS Daci_4973 NC_010002.1 5504556 5504867 D KEGG: bbr:BB3900 ferric alcaligin siderophore receptor; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid-like protein 5504556..5504867 Delftia acidovorans SPH-1 5750584 YP_001565988.1 CDS Daci_4974 NC_010002.1 5504983 5505492 D KEGG: pfo:Pfl_3710 hypothetical protein; hypothetical protein 5504983..5505492 Delftia acidovorans SPH-1 5750585 YP_001565989.1 CDS Daci_4975 NC_010002.1 5505521 5506810 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: vei:Veis_4743 major facilitator superfamily MFS_1; major facilitator transporter complement(5505521..5506810) Delftia acidovorans SPH-1 5750586 YP_001565990.1 CDS Daci_4976 NC_010002.1 5506937 5510569 R PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(5506937..5510569) Delftia acidovorans SPH-1 5750587 YP_001565991.1 CDS Daci_4977 NC_010002.1 5510811 5511593 R PFAM: protein of unknown function DUF1445; KEGG: bur:Bcep18194_B2576 hypothetical protein; hypothetical protein complement(5510811..5511593) Delftia acidovorans SPH-1 5750588 YP_001565992.1 CDS Daci_4978 NC_010002.1 5511721 5512650 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2577 transcriptional regulator, LysR family; LysR family transcriptional regulator 5511721..5512650 Delftia acidovorans SPH-1 5750589 YP_001565993.1 CDS Daci_4979 NC_010002.1 5512647 5513603 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5073 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5512647..5513603) Delftia acidovorans SPH-1 5750590 YP_001565994.1 CDS Daci_4980 NC_010002.1 5513719 5514684 D PFAM: conserved hypothetical protein; KEGG: pol:Bpro_2834 uncharacterized protein UPF0065; hypothetical protein 5513719..5514684 Delftia acidovorans SPH-1 5750591 YP_001565995.1 CDS pdxA NC_010002.1 5514692 5515720 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 5514692..5515720 Delftia acidovorans SPH-1 5750592 YP_001565996.1 CDS Daci_4982 NC_010002.1 5515749 5516921 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_2836 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 5515749..5516921 Delftia acidovorans SPH-1 5750593 YP_001565997.1 CDS Daci_4983 NC_010002.1 5516933 5517862 D PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_2247 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 5516933..5517862 Delftia acidovorans SPH-1 5750594 YP_001565998.1 CDS Daci_4984 NC_010002.1 5517989 5518366 D KEGG: sus:Acid_0146 hypothetical protein; hypothetical protein 5517989..5518366 Delftia acidovorans SPH-1 5750595 YP_001565999.1 CDS Daci_4985 NC_010002.1 5518356 5518880 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0743 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5518356..5518880 Delftia acidovorans SPH-1 5750596 YP_001566000.1 CDS Daci_4986 NC_010002.1 5518867 5519196 R hypothetical protein complement(5518867..5519196) Delftia acidovorans SPH-1 5750597 YP_001566001.1 CDS Daci_4987 NC_010002.1 5519381 5519854 D PFAM: Tail Collar domain protein; KEGG: fjo:Fjoh_2683 phage tail collar domain protein; tail collar domain-containing protein 5519381..5519854 Delftia acidovorans SPH-1 5750598 YP_001566002.1 CDS Daci_4988 NC_010002.1 5519854 5520345 D PFAM: Tail Collar domain protein; KEGG: sus:Acid_0150 phage tail collar domain protein; tail collar domain-containing protein 5519854..5520345 Delftia acidovorans SPH-1 5750599 YP_001566003.1 CDS Daci_4989 NC_010002.1 5520351 5520872 D PFAM: Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB; tail collar domain-containing protein 5520351..5520872 Delftia acidovorans SPH-1 5750600 YP_001566004.1 CDS Daci_4990 NC_010002.1 5520881 5525479 D PFAM: Ig domain protein group 1 domain protein; KEGG: sus:Acid_0554 beta-propeller repeat protein; Ig domain-containing protein 5520881..5525479 Delftia acidovorans SPH-1 5750601 YP_001566005.1 CDS Daci_4991 NC_010002.1 5525528 5526820 R KEGG: reh:H16_B0479 hypothetical protein; hypothetical protein complement(5525528..5526820) Delftia acidovorans SPH-1 5750602 YP_001566006.1 CDS Daci_4992 NC_010002.1 5526817 5527818 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B0480 probable extra-cytoplasmic solute receptor; hypothetical protein complement(5526817..5527818) Delftia acidovorans SPH-1 5750603 YP_001566007.1 CDS Daci_4993 NC_010002.1 5527970 5528881 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0481 transcriptional regulator, LysR-family; LysR family transcriptional regulator 5527970..5528881 Delftia acidovorans SPH-1 5750604 YP_001566008.1 CDS Daci_4994 NC_010002.1 5528909 5529652 D PFAM: cyclic nucleotide-binding; KEGG: aav:Aave_3075 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 5528909..5529652 Delftia acidovorans SPH-1 5750605 YP_001566009.1 CDS Daci_4995 NC_010002.1 5529721 5530992 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(5529721..5530992) Delftia acidovorans SPH-1 5750606 YP_001566010.1 CDS Daci_4996 NC_010002.1 5531093 5531779 R PFAM: Fimbrial protein; KEGG: pap:PSPA7_4404 adhesin 20K; fimbrial protein complement(5531093..5531779) Delftia acidovorans SPH-1 5750607 YP_001566011.1 CDS Daci_4997 NC_010002.1 5532481 5533257 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_1194 exodeoxyribonuclease III Xth; exodeoxyribonuclease III 5532481..5533257 Delftia acidovorans SPH-1 5750608 YP_001566012.1 CDS Daci_4998 NC_010002.1 5533273 5534127 R KEGG: ajs:Ajs_1193 hypothetical protein; hypothetical protein complement(5533273..5534127) Delftia acidovorans SPH-1 5750609 YP_001566013.1 CDS Daci_4999 NC_010002.1 5534229 5535800 R KEGG: aav:Aave_1445 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(5534229..5535800) Delftia acidovorans SPH-1 5750610 YP_001566014.1 CDS Daci_5000 NC_010002.1 5535846 5536922 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1191 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase NtrB complement(5535846..5536922) Delftia acidovorans SPH-1 5750611 YP_001566015.1 CDS Daci_5001 NC_010002.1 5536953 5537456 R KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein; putative signal peptide protein complement(5536953..5537456) Delftia acidovorans SPH-1 5750612 YP_001566016.1 CDS Daci_5002 NC_010002.1 5537637 5539052 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: aav:Aave_1442 glutamine synthetase, type I; type I glutamine synthetase complement(5537637..5539052) Delftia acidovorans SPH-1 5750613 YP_001566017.1 CDS Daci_5003 NC_010002.1 5539289 5540107 R PFAM: molybdopterin binding domain; KEGG: aav:Aave_1441 molybdopterin binding domain; molybdopterin-binding domain-containing protein complement(5539289..5540107) Delftia acidovorans SPH-1 5750614 YP_001566018.1 CDS Daci_5004 NC_010002.1 5540104 5540991 R KEGG: ajs:Ajs_1187 putative transmembrane protein; putative transmembrane protein complement(5540104..5540991) Delftia acidovorans SPH-1 5750615 YP_001566019.1 CDS Daci_5005 NC_010002.1 5541019 5541999 R PFAM: fatty acid hydroxylase; KEGG: aav:Aave_1439 hypothetical protein; fatty acid hydroxylase complement(5541019..5541999) Delftia acidovorans SPH-1 5750616 YP_001566020.1 CDS Daci_5006 NC_010002.1 5542039 5542857 R PFAM: polysaccharide deacetylase; KEGG: aav:Aave_1438 polysaccharide deacetylase; polysaccharide deacetylase complement(5542039..5542857) Delftia acidovorans SPH-1 5750617 YP_001566021.1 CDS Daci_5007 NC_010002.1 5542857 5544089 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1184 hypothetical protein; hypothetical protein complement(5542857..5544089) Delftia acidovorans SPH-1 5750618 YP_001566022.1 CDS Daci_5008 NC_010002.1 5544272 5544796 R PFAM: phosphoribosyltransferase; KEGG: aav:Aave_1435 phosphoribosyltransferase; phosphoribosyltransferase complement(5544272..5544796) Delftia acidovorans SPH-1 5750619 YP_001566023.1 CDS Daci_5009 NC_010002.1 5544840 5546216 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5544840..5546216) Delftia acidovorans SPH-1 5750620 YP_001566024.1 CDS Daci_5010 NC_010002.1 5546256 5547404 R PFAM: tRNA synthetase class II (G H P and S); KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); tRNA synthetase class II (G H P and S) complement(5546256..5547404) Delftia acidovorans SPH-1 5750621 YP_001566025.1 CDS Daci_5011 NC_010002.1 5547605 5548495 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; HflC protein complement(5547605..5548495) Delftia acidovorans SPH-1 5750622 YP_001566026.1 CDS Daci_5012 NC_010002.1 5548508 5549902 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: ajs:Ajs_1177 HflK protein; HflK protein complement(5548508..5549902) Delftia acidovorans SPH-1 5750623 YP_001566027.1 CDS Daci_5013 NC_010002.1 5549974 5551188 R TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: aav:Aave_1430 GTP-binding protein; GTP-binding proten HflX complement(5549974..5551188) Delftia acidovorans SPH-1 5750624 YP_001566028.1 CDS Daci_5014 NC_010002.1 5551256 5551507 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: aav:Aave_1429 RNA chaperone Hfq; RNA chaperone Hfq complement(5551256..5551507) Delftia acidovorans SPH-1 5750625 YP_001566029.1 CDS engA NC_010002.1 5551610 5552956 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(5551610..5552956) Delftia acidovorans SPH-1 5750626 YP_001566030.1 CDS Daci_5016 NC_010002.1 5552972 5554153 R TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: aav:Aave_1427 pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL complement(5552972..5554153) Delftia acidovorans SPH-1 5750627 YP_001566031.1 CDS Daci_5017 NC_010002.1 5554150 5554833 R KEGG: aav:Aave_1426 hypothetical protein; hypothetical protein complement(5554150..5554833) Delftia acidovorans SPH-1 5750628 YP_001566032.1 CDS hisS NC_010002.1 5554904 5556199 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(5554904..5556199) Delftia acidovorans SPH-1 5750629 YP_001566033.1 CDS ispG NC_010002.1 5556343 5557626 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(5556343..5557626) Delftia acidovorans SPH-1 5750630 YP_001566034.1 CDS Daci_5020 NC_010002.1 5557629 5558660 R KEGG: pol:Bpro_2609 hypothetical protein; hypothetical protein complement(5557629..5558660) Delftia acidovorans SPH-1 5750631 YP_001566035.1 CDS Daci_5021 NC_010002.1 5558653 5559540 R KEGG: aav:Aave_1422 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW complement(5558653..5559540) Delftia acidovorans SPH-1 5750632 YP_001566036.1 CDS Daci_5022 NC_010002.1 5559563 5560756 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: aav:Aave_1421 radical SAM enzyme, Cfr family; radical SAM protein complement(5559563..5560756) Delftia acidovorans SPH-1 5750633 YP_001566037.1 CDS ndk NC_010002.1 5560780 5561205 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(5560780..5561205) Delftia acidovorans SPH-1 5750634 YP_001566038.1 CDS Daci_5024 NC_010002.1 5561375 5562778 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: aav:Aave_1419 pseudouridine synthase; pseudouridine synthase complement(5561375..5562778) Delftia acidovorans SPH-1 5750635 YP_001566039.1 CDS Daci_5025 NC_010002.1 5562775 5563611 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: aav:Aave_1418 putative transcriptional regulator; segregation and condensation protein B complement(5562775..5563611) Delftia acidovorans SPH-1 5750636 YP_001566040.1 CDS Daci_5026 NC_010002.1 5563722 5564792 R KEGG: ajs:Ajs_1163 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(5563722..5564792) Delftia acidovorans SPH-1 5750637 YP_001566041.1 CDS Daci_5027 NC_010002.1 5564792 5565670 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: aav:Aave_1416 peptidase M23B; peptidase M23B complement(5564792..5565670) Delftia acidovorans SPH-1 5750638 YP_001566042.1 CDS Daci_5028 NC_010002.1 5565684 5566427 R KEGG: aav:Aave_1415 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(5565684..5566427) Delftia acidovorans SPH-1 5750639 YP_001566043.1 CDS surE NC_010002.1 5566469 5567338 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(5566469..5567338) Delftia acidovorans SPH-1 5750640 YP_001566044.1 CDS Daci_5030 NC_010002.1 5567372 5568352 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aav:Aave_1413 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 5567372..5568352 Delftia acidovorans SPH-1 5750641 YP_001566045.1 CDS Daci_5031 NC_010002.1 5568411 5570009 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1412 diguanylate cyclase; diguanylate cyclase 5568411..5570009 Delftia acidovorans SPH-1 5750642 YP_001566046.1 CDS Daci_5032 NC_010002.1 5570070 5571704 D KEGG: ajs:Ajs_1157 alkaline phosphatase; alkaline phosphatase 5570070..5571704 Delftia acidovorans SPH-1 5750643 YP_001566047.1 CDS Daci_5033 NC_010002.1 5571842 5573071 D PFAM: sodium/glutamate symporter; KEGG: ajs:Ajs_2284 sodium/glutamate symporter; sodium/glutamate symporter 5571842..5573071 Delftia acidovorans SPH-1 5750644 YP_001566048.1 CDS Daci_5034 NC_010002.1 5573095 5574726 D PFAM: phospholipase D/Transphosphatidylase; KEGG: reh:H16_B1107 phospholipase D; phospholipase D/transphosphatidylase 5573095..5574726 Delftia acidovorans SPH-1 5750645 YP_001566049.1 CDS Daci_5035 NC_010002.1 5574743 5576065 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bam:Bamb_4134 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5574743..5576065) Delftia acidovorans SPH-1 5750646 YP_001566050.1 CDS Daci_5036 NC_010002.1 5576463 5576738 D KEGG: bte:BTH_I1972 hypothetical protein; hypothetical protein 5576463..5576738 Delftia acidovorans SPH-1 5750647 YP_001566051.1 CDS Daci_5037 NC_010002.1 5576735 5577541 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: aci:ACIAD1987 methionine aminopeptidase; methionine aminopeptidase 5576735..5577541 Delftia acidovorans SPH-1 5750648 YP_001566052.1 CDS Daci_5038 NC_010002.1 5577544 5577879 D PFAM: small multidrug resistance protein; KEGG: aav:Aave_4701 small multidrug resistance protein; small multidrug resistance protein 5577544..5577879 Delftia acidovorans SPH-1 5750649 YP_001566053.1 CDS Daci_5039 NC_010002.1 5577907 5579553 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3136 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(5577907..5579553) Delftia acidovorans SPH-1 5750650 YP_001566054.1 CDS Daci_5040 NC_010002.1 5580026 5581498 R hypothetical protein complement(5580026..5581498) Delftia acidovorans SPH-1 5750651 YP_001566055.1 CDS Daci_5041 NC_010002.1 5581502 5582902 R PFAM: band 7 protein; KEGG: aba:Acid345_1730 membrane protease; hypothetical protein complement(5581502..5582902) Delftia acidovorans SPH-1 5750652 YP_001566056.1 CDS Daci_5042 NC_010002.1 5583107 5583832 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dps:DP0750 two-component system response regulator (Pho family); two component transcriptional regulator 5583107..5583832 Delftia acidovorans SPH-1 5750653 YP_001566057.1 CDS Daci_5043 NC_010002.1 5583829 5586051 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: psb:Psyr_1498 heavy metal sensor kinase; histidine kinase 5583829..5586051 Delftia acidovorans SPH-1 5750654 YP_001566058.1 CDS Daci_5044 NC_010002.1 5586093 5588126 D KEGG: aav:Aave_1407 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 5586093..5588126 Delftia acidovorans SPH-1 5750655 YP_001566059.1 CDS Daci_5045 NC_010002.1 5588390 5590816 D TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: ajs:Ajs_3138 RNA polymerase, sigma 70 subunit, RpoD family; RNA polymerase sigma 70 subunit RpoD 5588390..5590816 Delftia acidovorans SPH-1 5750656 YP_001566060.1 CDS Daci_5046 NC_010002.1 5590967 5591446 D PFAM: adenylate cyclase; KEGG: abo:ABO_0867 hypothetical protein; adenylate cyclase 5590967..5591446 Delftia acidovorans SPH-1 5750657 YP_001566061.1 CDS Daci_5047 NC_010002.1 5591532 5592059 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_3213 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5591532..5592059) Delftia acidovorans SPH-1 5750658 YP_001566062.1 CDS Daci_5048 NC_010002.1 5592080 5593588 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: reh:H16_B0980 transcriptional regulator, MocR family; transcriptional regulator complement(5592080..5593588) Delftia acidovorans SPH-1 5750659 YP_001566063.1 CDS Daci_5049 NC_010002.1 5593728 5595038 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: bbr:BB1807 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 5593728..5595038 Delftia acidovorans SPH-1 5750660 YP_001566064.1 CDS Daci_5050 NC_010002.1 5595069 5596526 D KEGG: reh:H16_B0982 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; succinate-semialdehyde dehydrogenase 5595069..5596526 Delftia acidovorans SPH-1 5750661 YP_001566065.1 CDS Daci_5051 NC_010002.1 5596632 5597609 D TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: aav:Aave_1400 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 5596632..5597609 Delftia acidovorans SPH-1 5750662 YP_001566066.1 CDS Daci_5052 NC_010002.1 5597597 5599777 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_1001 putative outer membrane receptor; TonB-dependent receptor complement(5597597..5599777) Delftia acidovorans SPH-1 5750663 YP_001566067.1 CDS Daci_5053 NC_010002.1 5599990 5601375 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: har:HEAR3398 oxidoreductase binding flavins likely to be involved in sulfur metabolism (CysJ: sulfite reductase alpha subunit); flavodoxin/nitric oxide synthase complement(5599990..5601375) Delftia acidovorans SPH-1 5750664 YP_001566068.1 CDS Daci_5054 NC_010002.1 5601421 5602509 R PFAM: ApbE family lipoprotein; KEGG: mpt:Mpe_A3727 thiamine biosynthesis protein; ApbE family lipoprotein complement(5601421..5602509) Delftia acidovorans SPH-1 5750665 YP_001566069.1 CDS Daci_5055 NC_010002.1 5602539 5603357 R KEGG: xcb:XC_1336 hypothetical protein; hypothetical protein complement(5602539..5603357) Delftia acidovorans SPH-1 5750666 YP_001566070.1 CDS Daci_5056 NC_010002.1 5603458 5603985 R KEGG: mpt:Mpe_A3729 hypothetical protein; hypothetical protein complement(5603458..5603985) Delftia acidovorans SPH-1 5750667 YP_001566071.1 CDS Daci_5057 NC_010002.1 5604006 5604644 R PFAM: PepSY-associated TM helix domain protein; KEGG: mpt:Mpe_A3730 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(5604006..5604644) Delftia acidovorans SPH-1 5750668 YP_001566072.1 CDS Daci_5058 NC_010002.1 5605015 5606091 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_1237 uncharacterized protein UPF0065; hypothetical protein 5605015..5606091 Delftia acidovorans SPH-1 5750669 YP_001566073.1 CDS Daci_5059 NC_010002.1 5606312 5606617 D KEGG: ajs:Ajs_3145 putative transcriptional regulator; putative transcriptional regulator 5606312..5606617 Delftia acidovorans SPH-1 5750670 YP_001566074.1 CDS Daci_5060 NC_010002.1 5606727 5607080 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ajs:Ajs_3146 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase 5606727..5607080 Delftia acidovorans SPH-1 5750671 YP_001566075.1 CDS Daci_5061 NC_010002.1 5607198 5607722 R KEGG: vei:Veis_2053 hypothetical protein; hypothetical protein complement(5607198..5607722) Delftia acidovorans SPH-1 5750672 YP_001566076.1 CDS Daci_5062 NC_010002.1 5607909 5610008 R PFAM: Na+/solute symporter; KEGG: ajs:Ajs_2877 Na+/solute symporter; Na+/solute symporter complement(5607909..5610008) Delftia acidovorans SPH-1 5750673 YP_001566077.1 CDS Daci_5063 NC_010002.1 5610001 5610381 R KEGG: aav:Aave_1383 hypothetical protein; hypothetical protein complement(5610001..5610381) Delftia acidovorans SPH-1 5750674 YP_001566078.1 CDS Daci_5064 NC_010002.1 5610399 5612789 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(5610399..5612789) Delftia acidovorans SPH-1 5750675 YP_001566079.1 CDS Daci_5065 NC_010002.1 5612999 5613820 D PFAM: protein of unknown function DUF299; KEGG: ajs:Ajs_2880 protein of unknown function DUF299; hypothetical protein 5612999..5613820 Delftia acidovorans SPH-1 5750676 YP_001566080.1 CDS Daci_5066 NC_010002.1 5613836 5614780 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_0600 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5613836..5614780) Delftia acidovorans SPH-1 5750677 YP_001566081.1 CDS Daci_5067 NC_010002.1 5614793 5615203 D KEGG: pen:PSEEN1394 hypothetical protein; hypothetical protein 5614793..5615203 Delftia acidovorans SPH-1 5750678 YP_001566082.1 CDS Daci_5068 NC_010002.1 5615252 5616376 R PFAM: Haemin-degrading family protein; KEGG: mfa:Mfla_1604 haemin-degrading; hemin-degrading family protein complement(5615252..5616376) Delftia acidovorans SPH-1 5750679 YP_001566083.1 CDS Daci_5069 NC_010002.1 5616373 5616807 R KEGG: aav:Aave_1378 hypothetical protein; hypothetical protein complement(5616373..5616807) Delftia acidovorans SPH-1 5750680 YP_001566084.1 CDS Daci_5070 NC_010002.1 5616811 5619099 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_2194 TonB-dependent receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(5616811..5619099) Delftia acidovorans SPH-1 5750681 YP_001566085.1 CDS Daci_5071 NC_010002.1 5619502 5621058 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2881 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase subunit F complement(5619502..5621058) Delftia acidovorans SPH-1 5750682 YP_001566086.1 CDS Daci_5072 NC_010002.1 5621162 5621725 R with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C complement(5621162..5621725) Delftia acidovorans SPH-1 5750683 YP_001566087.1 CDS Daci_5073 NC_010002.1 5622094 5622570 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin 5622094..5622570 Delftia acidovorans SPH-1 5750684 YP_001566088.1 CDS Daci_5074 NC_010002.1 5622665 5623963 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_1167 signal transduction histidine kinase; histidine kinase complement(5622665..5623963) Delftia acidovorans SPH-1 5750685 YP_001566089.1 CDS Daci_5075 NC_010002.1 5624062 5624850 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A0567 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5624062..5624850) Delftia acidovorans SPH-1 5750686 YP_001566090.1 CDS Daci_5076 NC_010002.1 5624888 5626321 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4536 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter complement(5624888..5626321) Delftia acidovorans SPH-1 5750687 YP_001566091.1 CDS Daci_5077 NC_010002.1 5626448 5626981 D PFAM: Ureidoglycolate hydrolase; KEGG: csa:Csal_0080 ureidoglycolate hydrolase; ureidoglycolate hydrolase 5626448..5626981 Delftia acidovorans SPH-1 5750688 YP_001566092.1 CDS Daci_5078 NC_010002.1 5627055 5628023 R PFAM: protein of unknown function DUF403; KEGG: aav:Aave_1354 protein of unknown function DUF403; hypothetical protein complement(5627055..5628023) Delftia acidovorans SPH-1 5750689 YP_001566093.1 CDS Daci_5079 NC_010002.1 5628024 5629493 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: aav:Aave_1353 protein of unknown function DUF404; hypothetical protein complement(5628024..5629493) Delftia acidovorans SPH-1 5750690 YP_001566094.1 CDS Daci_5080 NC_010002.1 5629637 5632135 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: vei:Veis_0403 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 complement(5629637..5632135) Delftia acidovorans SPH-1 5750691 YP_001566095.1 CDS Daci_5081 NC_010002.1 5632309 5632767 D PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP; endoribonuclease L-PSP 5632309..5632767 Delftia acidovorans SPH-1 5750692 YP_001566096.1 CDS Daci_5082 NC_010002.1 5632811 5634580 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_1017 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5632811..5634580) Delftia acidovorans SPH-1 5750693 YP_001566097.1 CDS Daci_5083 NC_010002.1 5634708 5637095 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(5634708..5637095) Delftia acidovorans SPH-1 5750694 YP_001566098.1 CDS Daci_5084 NC_010002.1 5637135 5638007 R PFAM: Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: aav:Aave_1341 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(5637135..5638007) Delftia acidovorans SPH-1 5750695 YP_001566099.1 CDS Daci_5085 NC_010002.1 5638011 5639993 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(5638011..5639993) Delftia acidovorans SPH-1 5750696 YP_001566100.1 CDS Daci_5086 NC_010002.1 5640154 5641380 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1013 major facilitator superfamily MFS_1; major facilitator transporter 5640154..5641380 Delftia acidovorans SPH-1 5750697 YP_001566101.1 CDS Daci_5087 NC_010002.1 5641382 5641531 D hypothetical protein 5641382..5641531 Delftia acidovorans SPH-1 5750698 YP_001566102.1 CDS Daci_5088 NC_010002.1 5641533 5642171 D PFAM: Methyltransferase type 11; KEGG: aav:Aave_1338 methyltransferase type 11; type 11 methyltransferase 5641533..5642171 Delftia acidovorans SPH-1 5750699 YP_001566103.1 CDS Daci_5089 NC_010002.1 5642247 5643143 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 5642247..5643143 Delftia acidovorans SPH-1 5750700 YP_001566104.1 CDS Daci_5090 NC_010002.1 5643140 5644297 D PFAM: NlpBDapX family lipoprotein; KEGG: ajs:Ajs_1009 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein 5643140..5644297 Delftia acidovorans SPH-1 5750701 YP_001566105.1 CDS Daci_5091 NC_010002.1 5644481 5644765 R KEGG: ajs:Ajs_1007 hypothetical protein; hypothetical protein complement(5644481..5644765) Delftia acidovorans SPH-1 5750702 YP_001566106.1 CDS Daci_5092 NC_010002.1 5645153 5646283 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: aav:Aave_1332 cupin 4 family protein; cupin 4 family protein complement(5645153..5646283) Delftia acidovorans SPH-1 5750703 YP_001566107.1 CDS Daci_5093 NC_010002.1 5646387 5647346 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pna:Pnap_3834 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(5646387..5647346) Delftia acidovorans SPH-1 5750704 YP_001566108.1 CDS Daci_5094 NC_010002.1 5647607 5649058 D PFAM: Aldehyde Dehydrogenase_; KEGG: net:Neut_2587 aldehyde dehydrogenase; aldehyde dehydrogenase 5647607..5649058 Delftia acidovorans SPH-1 5750705 YP_001566109.1 CDS Daci_5095 NC_010002.1 5649211 5649732 D KEGG: ajs:Ajs_1004 fkbp-type peptidyl-prolyl cis-trans isomerase; fkbp-type peptidyl-prolyl cis-trans isomerase 5649211..5649732 Delftia acidovorans SPH-1 5750706 YP_001566110.1 CDS Daci_5096 NC_010002.1 5649800 5650372 R PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1189 17 kDa surface antigen; 17 kDa surface antigen complement(5649800..5650372) Delftia acidovorans SPH-1 5750707 YP_001566111.1 CDS Daci_5097 NC_010002.1 5650518 5651054 R KEGG: eba:ebA7151 hypothetical protein; hypothetical protein complement(5650518..5651054) Delftia acidovorans SPH-1 5750708 YP_001566112.1 CDS Daci_5098 NC_010002.1 5651155 5651460 D KEGG: ajs:Ajs_4084 membrane protein; membrane protein 5651155..5651460 Delftia acidovorans SPH-1 5750709 YP_001566113.1 CDS Daci_5099 NC_010002.1 5651467 5652138 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_4083 two component transcriptional regulator, winged helix family; two component transcriptional regulator 5651467..5652138 Delftia acidovorans SPH-1 5750710 YP_001566114.1 CDS Daci_5100 NC_010002.1 5652135 5653583 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; histidine kinase 5652135..5653583 Delftia acidovorans SPH-1 5750711 YP_001566115.1 CDS Daci_5101 NC_010002.1 5653630 5654454 R KEGG: pna:Pnap_0132 hypothetical protein; hypothetical protein complement(5653630..5654454) Delftia acidovorans SPH-1 5750712 YP_001566116.1 CDS Daci_5102 NC_010002.1 5654518 5654967 R KEGG: aav:Aave_1329 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(5654518..5654967) Delftia acidovorans SPH-1 5750713 YP_001566117.1 CDS Daci_5103 NC_010002.1 5655038 5655583 R hypothetical protein complement(5655038..5655583) Delftia acidovorans SPH-1 5750714 YP_001566118.1 CDS Daci_5104 NC_010002.1 5655601 5656833 R KEGG: ajs:Ajs_1001 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(5655601..5656833) Delftia acidovorans SPH-1 5750715 YP_001566119.1 CDS pyrG NC_010002.1 5656927 5658585 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 5656927..5658585 Delftia acidovorans SPH-1 5750716 YP_001566120.1 CDS Daci_5106 NC_010002.1 5658626 5659483 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 5658626..5659483 Delftia acidovorans SPH-1 5750717 YP_001566121.1 CDS Daci_5107 NC_010002.1 5659487 5659777 D PFAM: protein of unknown function DUF1330; KEGG: aav:Aave_1325 protein of unknown function DUF1330; hypothetical protein 5659487..5659777 Delftia acidovorans SPH-1 5750718 YP_001566122.1 CDS eno NC_010002.1 5660012 5661298 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 5660012..5661298 Delftia acidovorans SPH-1 5750719 YP_001566123.1 CDS Daci_5109 NC_010002.1 5661363 5661641 D PFAM: Septum formation initiator; KEGG: vei:Veis_2649 septum formation initiator; septum formation initiator 5661363..5661641 Delftia acidovorans SPH-1 5750720 YP_001566124.1 CDS Daci_5110 NC_010002.1 5661817 5662245 D hypothetical protein 5661817..5662245 Delftia acidovorans SPH-1 5750721 YP_001566125.1 CDS Daci_5111 NC_010002.1 5662258 5663250 R PFAM: Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein; Hsp33 protein complement(5662258..5663250) Delftia acidovorans SPH-1 5750722 YP_001566126.1 CDS Daci_5112 NC_010002.1 5663286 5663810 R PFAM: transferase hexapeptide repeat containing protein; KEGG: ajs:Ajs_0993 transferase hexapeptide protein; hexapaptide repeat-containing transferase complement(5663286..5663810) Delftia acidovorans SPH-1 5750723 YP_001566127.1 CDS Daci_5113 NC_010002.1 5663865 5664671 D PFAM: protein of unknown function DUF455; KEGG: aav:Aave_1317 protein of unknown function DUF455; hypothetical protein 5663865..5664671 Delftia acidovorans SPH-1 5750724 YP_001566128.1 CDS Daci_5114 NC_010002.1 5664743 5666137 D PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: aav:Aave_1316 diguanylate phosphodiesterase; diguanylate phosphodiesterase 5664743..5666137 Delftia acidovorans SPH-1 5750725 YP_001566129.1 CDS Daci_5115 NC_010002.1 5666196 5667485 D PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_0990 diguanylate phosphodiesterase; diguanylate phosphodiesterase 5666196..5667485 Delftia acidovorans SPH-1 5750726 YP_001566130.1 CDS Daci_5116 NC_010002.1 5667564 5668562 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0989 uncharacterized protein UPF0065; hypothetical protein complement(5667564..5668562) Delftia acidovorans SPH-1 5750727 YP_001566131.1 CDS Daci_5117 NC_010002.1 5668694 5669677 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ajs:Ajs_0988 tyrosine recombinase XerD; tyrosine recombinase XerD complement(5668694..5669677) Delftia acidovorans SPH-1 5750728 YP_001566132.1 CDS Daci_5118 NC_010002.1 5669754 5670716 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_1312 uncharacterized protein UPF0065; hypothetical protein complement(5669754..5670716) Delftia acidovorans SPH-1 5750729 YP_001566133.1 CDS Daci_5119 NC_010002.1 5670864 5671952 D PFAM: Auxin Efflux Carrier; KEGG: aav:Aave_1308 auxin efflux carrier; auxin efflux carrier 5670864..5671952 Delftia acidovorans SPH-1 5750730 YP_001566134.1 CDS Daci_5120 NC_010002.1 5671982 5672875 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3439 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5671982..5672875) Delftia acidovorans SPH-1 5750731 YP_001566135.1 CDS Daci_5121 NC_010002.1 5673106 5674494 D PFAM: Na+/solute symporter; KEGG: pfl:PFL_1573 sodium-solute symporter, putative; Na+/solute symporter 5673106..5674494 Delftia acidovorans SPH-1 5750732 YP_001566136.1 CDS Daci_5122 NC_010002.1 5674519 5675589 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sme:SMc01967 putative agmatinase protein; agmatinase 5674519..5675589 Delftia acidovorans SPH-1 5750733 YP_001566137.1 CDS Daci_5123 NC_010002.1 5675586 5676632 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A3279 helix-turn-helix, AraC type; AraC family transcriptional regulator complement(5675586..5676632) Delftia acidovorans SPH-1 5750734 YP_001566138.1 CDS Daci_5124 NC_010002.1 5676848 5679895 R KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(5676848..5679895) Delftia acidovorans SPH-1 5750735 YP_001566139.1 CDS Daci_5125 NC_010002.1 5680010 5681065 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: ajs:Ajs_0985 putative iron-sulfur cluster binding protein; iron-sulfur cluster-binding protein complement(5680010..5681065) Delftia acidovorans SPH-1 5750736 YP_001566140.1 CDS Daci_5126 NC_010002.1 5681078 5681605 D PFAM: protein of unknown function UPF0079; KEGG: vei:Veis_1712 protein of unknown function UPF0079; hypothetical protein 5681078..5681605 Delftia acidovorans SPH-1 5750737 YP_001566141.1 CDS Daci_5127 NC_010002.1 5681602 5683092 D PFAM: cell wall hydrolase/autolysin; KEGG: aav:Aave_1305 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 5681602..5683092 Delftia acidovorans SPH-1 5750738 YP_001566142.1 CDS Daci_5128 NC_010002.1 5683309 5683533 D PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_0979 17 kDa surface antigen; 17 kDa surface antigen 5683309..5683533 Delftia acidovorans SPH-1 5750739 YP_001566143.1 CDS Daci_5129 NC_010002.1 5683607 5684341 R PFAM: SNARE associated Golgi protein; KEGG: aav:Aave_1301 DedA protein (DSG-1 protein); hypothetical protein complement(5683607..5684341) Delftia acidovorans SPH-1 5750740 YP_001566144.1 CDS Daci_5130 NC_010002.1 5684378 5684821 D PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_0979 17 kDa surface antigen; 17 kDa surface antigen 5684378..5684821 Delftia acidovorans SPH-1 5750741 YP_001566145.1 CDS Daci_5131 NC_010002.1 5684986 5687010 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: aav:Aave_1300 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 5684986..5687010 Delftia acidovorans SPH-1 5750742 YP_001566146.1 CDS Daci_5132 NC_010002.1 5687036 5688040 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4060 uncharacterized protein UPF0065; hypothetical protein complement(5687036..5688040) Delftia acidovorans SPH-1 5750743 YP_001566147.1 CDS Daci_5133 NC_010002.1 5688093 5689316 R KEGG: bxe:Bxe_A2955 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(5688093..5689316) Delftia acidovorans SPH-1 5750744 YP_001566148.1 CDS Daci_5134 NC_010002.1 5689422 5690450 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A2956 transcriptional regulator, LysR family; LysR family transcriptional regulator 5689422..5690450 Delftia acidovorans SPH-1 5750745 YP_001566149.1 CDS Daci_5135 NC_010002.1 5690458 5691939 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A0867 hypothetical protein; RND efflux system outer membrane lipoprotein complement(5690458..5691939) Delftia acidovorans SPH-1 5750746 YP_001566150.1 CDS Daci_5136 NC_010002.1 5691968 5695276 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pna:Pnap_1299 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 family protein complement(5691968..5695276) Delftia acidovorans SPH-1 5750747 YP_001566151.1 CDS Daci_5137 NC_010002.1 5695306 5696589 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A0869 RND multidrug efflux membrane fusion protein MexE precursor; RND family efflux transporter MFP subunit complement(5695306..5696589) Delftia acidovorans SPH-1 5750748 YP_001566152.1 CDS Daci_5138 NC_010002.1 5696704 5697564 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: aav:Aave_1361 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(5696704..5697564) Delftia acidovorans SPH-1 5750749 YP_001566153.1 CDS Daci_5139 NC_010002.1 5697740 5698654 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1360 transcriptional regulator, LysR family; LysR family transcriptional regulator 5697740..5698654 Delftia acidovorans SPH-1 5750750 YP_001566154.1 CDS Daci_5140 NC_010002.1 5699007 5700350 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 5699007..5700350 Delftia acidovorans SPH-1 5750751 YP_001566155.1 CDS Daci_5141 NC_010002.1 5700427 5702649 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mpt:Mpe_B0326 conserved hypothetical ATP-dependent helicase; DEAD/DEAH box helicase complement(5700427..5702649) Delftia acidovorans SPH-1 5750752 YP_001566156.1 CDS Daci_5142 NC_010002.1 5702668 5703972 R KEGG: mpt:Mpe_B0327 hypothetical protein; hypothetical protein complement(5702668..5703972) Delftia acidovorans SPH-1 5750753 YP_001566157.1 CDS Daci_5143 NC_010002.1 5703969 5706365 R KEGG: psa:PST_3463 hypothetical protein; hypothetical protein complement(5703969..5706365) Delftia acidovorans SPH-1 5750754 YP_001566158.1 CDS Daci_5144 NC_010002.1 5706749 5707468 D KEGG: ajs:Ajs_4234 hypothetical protein; hypothetical protein 5706749..5707468 Delftia acidovorans SPH-1 5750755 YP_001566159.1 CDS Daci_5145 NC_010002.1 5707665 5708993 R PFAM: beta-lactamase; KEGG: reh:H16_B1574 beta-lactamase class C; 6-aminohexanoate-dimer hydrolase complement(5707665..5708993) Delftia acidovorans SPH-1 5750756 YP_001566160.1 CDS Daci_5146 NC_010002.1 5709103 5709975 R KEGG: ajs:Ajs_3300 hypothetical protein; hypothetical protein complement(5709103..5709975) Delftia acidovorans SPH-1 5750757 YP_001566161.1 CDS Daci_5147 NC_010002.1 5710017 5711027 D KEGG: aav:Aave_1297 hypothetical protein; hypothetical protein 5710017..5711027 Delftia acidovorans SPH-1 5750758 YP_001566162.1 CDS Daci_5148 NC_010002.1 5711055 5712494 R KEGG: dge:Dgeo_1940 hypothetical protein; hypothetical protein complement(5711055..5712494) Delftia acidovorans SPH-1 5750759 YP_001566163.1 CDS Daci_5149 NC_010002.1 5712707 5714476 D PFAM: Ankyrin; KEGG: bur:Bcep18194_B0772 hypothetical protein; ankyrin 5712707..5714476 Delftia acidovorans SPH-1 5750760 YP_001566164.1 CDS Daci_5150 NC_010002.1 5714483 5715733 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mms:mma_0255 hypothetical protein; hypothetical protein complement(5714483..5715733) Delftia acidovorans SPH-1 5750761 YP_001566165.1 CDS Daci_5151 NC_010002.1 5715908 5716873 R PFAM: Rhodanese domain protein; KEGG: mms:mma_0256 thiosulfate sulfurtransferase; rhodanese domain-containing protein complement(5715908..5716873) Delftia acidovorans SPH-1 5750762 YP_001566166.1 CDS Daci_5152 NC_010002.1 5717033 5718274 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_1536 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 5717033..5718274 Delftia acidovorans SPH-1 5750763 YP_001566167.1 CDS Daci_5153 NC_010002.1 5718304 5719293 D KEGG: ajs:Ajs_3111 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 5718304..5719293 Delftia acidovorans SPH-1 5750764 YP_001566168.1 CDS Daci_5154 NC_010002.1 5719310 5720026 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3112 ABC transporter related; ABC transporter-like protein 5719310..5720026 Delftia acidovorans SPH-1 5750765 YP_001566169.1 CDS Daci_5155 NC_010002.1 5720046 5722613 D PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3114 protein of unknown function DUF214; hypothetical protein 5720046..5722613 Delftia acidovorans SPH-1 5750766 YP_001566170.1 CDS Daci_5156 NC_010002.1 5722630 5723697 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 5722630..5723697 Delftia acidovorans SPH-1 5750767 YP_001566171.1 CDS Daci_5157 NC_010002.1 5723701 5724825 D KEGG: ajs:Ajs_3116 secreted hydrolase-like protein; secreted hydrolase-like protein 5723701..5724825 Delftia acidovorans SPH-1 5750768 YP_001566172.1 CDS Daci_5158 NC_010002.1 5724896 5725129 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mca:MCA2652 hypothetical protein; CopG/Arc/MetJ family addiction module antidote protein 5724896..5725129 Delftia acidovorans SPH-1 5750769 YP_001566173.1 CDS Daci_5159 NC_010002.1 5725126 5725455 D PFAM: plasmid stabilization system; KEGG: mca:MCA2653 hypothetical protein; plasmid stabilization system protein 5725126..5725455 Delftia acidovorans SPH-1 5750770 YP_001566174.1 CDS Daci_5160 NC_010002.1 5725528 5726526 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1285 inner-membrane translocator; inner-membrane translocator complement(5725528..5726526) Delftia acidovorans SPH-1 5750771 YP_001566175.1 CDS Daci_5161 NC_010002.1 5726554 5727438 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1284 inner-membrane translocator; inner-membrane translocator complement(5726554..5727438) Delftia acidovorans SPH-1 5750772 YP_001566176.1 CDS Daci_5162 NC_010002.1 5727496 5728692 R KEGG: ajs:Ajs_3120 putative substrate-binding periplasmic (pbp) ABC transporter protein; putative substrate-binding periplasmic (pbp) ABC transporter protein complement(5727496..5728692) Delftia acidovorans SPH-1 5750773 YP_001566177.1 CDS Daci_5163 NC_010002.1 5728792 5729502 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3121 ABC transporter related; ABC transporter-like protein complement(5728792..5729502) Delftia acidovorans SPH-1 5750774 YP_001566178.1 CDS Daci_5164 NC_010002.1 5729504 5730274 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1280 ABC transporter-related protein; ABC transporter-like protein complement(5729504..5730274) Delftia acidovorans SPH-1 5750775 YP_001566179.1 CDS Daci_5165 NC_010002.1 5730888 5731397 R PFAM: protein of unknown function DUF1178; KEGG: vei:Veis_4072 protein of unknown function DUF1178; hypothetical protein complement(5730888..5731397) Delftia acidovorans SPH-1 5750776 YP_001566180.1 CDS Daci_5166 NC_010002.1 5731436 5731741 R KEGG: ajs:Ajs_0971 putative transmembrane protein; putative transmembrane protein complement(5731436..5731741) Delftia acidovorans SPH-1 5750777 YP_001566181.1 CDS Daci_5167 NC_010002.1 5731797 5733290 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(5731797..5733290) Delftia acidovorans SPH-1 5750778 YP_001566182.1 CDS Daci_5168 NC_010002.1 5733315 5734790 R KEGG: ajs:Ajs_0969 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(5733315..5734790) Delftia acidovorans SPH-1 5750779 YP_001566183.1 CDS Daci_5169 NC_010002.1 5734807 5736846 R KEGG: ajs:Ajs_0968 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(5734807..5736846) Delftia acidovorans SPH-1 5750780 YP_001566184.1 CDS Daci_5170 NC_010002.1 5736876 5737184 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: aav:Aave_1273 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L complement(5736876..5737184) Delftia acidovorans SPH-1 5750781 YP_001566185.1 CDS Daci_5171 NC_010002.1 5737181 5737849 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: ajs:Ajs_0966 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(5737181..5737849) Delftia acidovorans SPH-1 5750782 YP_001566186.1 CDS Daci_5172 NC_010002.1 5737884 5738393 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(5737884..5738393) Delftia acidovorans SPH-1 5750783 YP_001566187.1 CDS Daci_5173 NC_010002.1 5738405 5739481 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: aav:Aave_1270 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase complement(5738405..5739481) Delftia acidovorans SPH-1 5750784 YP_001566188.1 CDS Daci_5174 NC_010002.1 5739478 5741601 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(5739478..5741601) Delftia acidovorans SPH-1 5750785 YP_001566189.1 CDS Daci_5175 NC_010002.1 5741617 5742975 R KEGG: ajs:Ajs_0962 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(5741617..5742975) Delftia acidovorans SPH-1 5750786 YP_001566190.1 CDS Daci_5176 NC_010002.1 5742972 5743463 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aav:Aave_1267 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E complement(5742972..5743463) Delftia acidovorans SPH-1 5750787 YP_001566191.1 CDS Daci_5177 NC_010002.1 5743460 5744713 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(5743460..5744713) Delftia acidovorans SPH-1 5750788 YP_001566192.1 CDS Daci_5178 NC_010002.1 5744746 5745357 R KEGG: ajs:Ajs_0959 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(5744746..5745357) Delftia acidovorans SPH-1 5750789 YP_001566193.1 CDS Daci_5179 NC_010002.1 5745365 5745844 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(5745365..5745844) Delftia acidovorans SPH-1 5750790 YP_001566194.1 CDS Daci_5180 NC_010002.1 5745868 5746227 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: aav:Aave_1263 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 complement(5745868..5746227) Delftia acidovorans SPH-1 5750791 YP_001566195.1 CDS Daci_5181 NC_010002.1 5746503 5746895 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: aav:Aave_1262 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(5746503..5746895) Delftia acidovorans SPH-1 5750793 YP_001566196.1 CDS tpiA NC_010002.1 5746954 5747700 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(5746954..5747700) Delftia acidovorans SPH-1 5750794 YP_001566197.1 CDS Daci_5183 NC_010002.1 5747703 5748704 R TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aav:Aave_1260 alcohol dehydrogenase, zinc-binding domain protein; PIG3 family NAD(P)H quinone oxidoreductase complement(5747703..5748704) Delftia acidovorans SPH-1 5750795 YP_001566198.1 CDS Daci_5184 NC_010002.1 5748824 5751085 R KEGG: aav:Aave_1259 3' exoribonuclease; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(5748824..5751085) Delftia acidovorans SPH-1 5750796 YP_001566199.1 CDS rpsO NC_010002.1 5751293 5751559 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(5751293..5751559) Delftia acidovorans SPH-1 5750797 YP_001566200.1 CDS Daci_5186 NC_010002.1 5751799 5752113 D KEGG: vei:Veis_2820 hypothetical protein; hypothetical protein 5751799..5752113 Delftia acidovorans SPH-1 5750798 YP_001566201.1 CDS Daci_5187 NC_010002.1 5752363 5752926 D KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein; putative type-4 fimbrial pilin related signal peptide protein 5752363..5752926 Delftia acidovorans SPH-1 5750799 YP_001566202.1 CDS Daci_5188 NC_010002.1 5752917 5753537 D TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV; type IV pilus modification protein PilV 5752917..5753537 Delftia acidovorans SPH-1 5750800 YP_001566203.1 CDS Daci_5189 NC_010002.1 5753534 5754409 D KEGG: ajs:Ajs_3186 hypothetical protein; hypothetical protein 5753534..5754409 Delftia acidovorans SPH-1 5750801 YP_001566204.1 CDS Daci_5190 NC_010002.1 5754406 5755170 D KEGG: ajs:Ajs_3187 hypothetical protein; hypothetical protein 5754406..5755170 Delftia acidovorans SPH-1 5750802 YP_001566205.1 CDS Daci_5191 NC_010002.1 5755186 5757582 D PFAM: FG-GAP repeat protein; KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1; FG-GAP repeat-containing protein 5755186..5757582 Delftia acidovorans SPH-1 5750803 YP_001566206.1 CDS Daci_5192 NC_010002.1 5757579 5758010 D KEGG: ajs:Ajs_3189 fimbrial protein pilin; fimbrial protein pilin 5757579..5758010 Delftia acidovorans SPH-1 5750804 YP_001566207.1 CDS Daci_5193 NC_010002.1 5758127 5758693 D KEGG: ajs:Ajs_3181 N-terminal methylation site; N-terminal methylation site-containing protein 5758127..5758693 Delftia acidovorans SPH-1 5750805 YP_001566208.1 CDS Daci_5194 NC_010002.1 5758771 5759403 D TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV; type IV pilus modification protein PilV 5758771..5759403 Delftia acidovorans SPH-1 5750806 YP_001566209.1 CDS Daci_5195 NC_010002.1 5759406 5760338 D KEGG: ajs:Ajs_3186 hypothetical protein; hypothetical protein 5759406..5760338 Delftia acidovorans SPH-1 5750807 YP_001566210.1 CDS Daci_5196 NC_010002.1 5760358 5761092 D KEGG: ajs:Ajs_3187 hypothetical protein; hypothetical protein 5760358..5761092 Delftia acidovorans SPH-1 5750808 YP_001566211.1 CDS Daci_5197 NC_010002.1 5761165 5764713 D PFAM: FG-GAP repeat protein; KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1; FG-GAP repeat-containing protein 5761165..5764713 Delftia acidovorans SPH-1 5750809 YP_001566212.1 CDS Daci_5198 NC_010002.1 5764710 5765156 D KEGG: ajs:Ajs_3189 fimbrial protein pilin; fimbrial protein pilin 5764710..5765156 Delftia acidovorans SPH-1 5750810 YP_001566213.1 CDS Daci_5199 NC_010002.1 5765221 5766330 D KEGG: ajs:Ajs_3190 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 5765221..5766330 Delftia acidovorans SPH-1 5750811 YP_001566214.1 CDS Daci_5200 NC_010002.1 5766414 5768228 D PFAM: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3191 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 5766414..5768228 Delftia acidovorans SPH-1 5750812 YP_001566215.1 CDS Daci_5201 NC_010002.1 5768242 5769231 R PFAM: dihydrouridine synthase DuS; KEGG: aav:Aave_1255 dihydrouridine synthase, DuS; dihydrouridine synthase DuS complement(5768242..5769231) Delftia acidovorans SPH-1 5750813 YP_001566216.1 CDS Daci_5202 NC_010002.1 5769388 5769987 D KEGG: aav:Aave_1254 hypothetical protein; hypothetical protein 5769388..5769987 Delftia acidovorans SPH-1 5750814 YP_001566217.1 CDS Daci_5203 NC_010002.1 5770016 5771227 R PFAM: methyltransferase small; Methyltransferase type 11; KEGG: ajs:Ajs_3193 methyltransferase small; methyltransferase small complement(5770016..5771227) Delftia acidovorans SPH-1 5750815 YP_001566218.1 CDS Daci_5204 NC_010002.1 5771273 5771794 R PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3194 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5771273..5771794) Delftia acidovorans SPH-1 5750816 YP_001566219.1 CDS Daci_5205 NC_010002.1 5772052 5773548 R PFAM: Aldehyde Dehydrogenase_; KEGG: ajs:Ajs_3195 aldehyde dehydrogenase; aldehyde dehydrogenase complement(5772052..5773548) Delftia acidovorans SPH-1 5750817 YP_001566220.1 CDS Daci_5206 NC_010002.1 5773679 5774032 R KEGG: aav:Aave_1250 hypothetical protein; hypothetical protein complement(5773679..5774032) Delftia acidovorans SPH-1 5750818 YP_001566221.1 CDS Daci_5207 NC_010002.1 5774063 5776675 R KEGG: ajs:Ajs_3198 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(5774063..5776675) Delftia acidovorans SPH-1 5750819 YP_001566222.1 CDS Daci_5208 NC_010002.1 5776809 5777753 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RS05428 probable transcription regulator protein; AraC family transcriptional regulator complement(5776809..5777753) Delftia acidovorans SPH-1 5750820 YP_001566223.1 CDS Daci_5209 NC_010002.1 5777786 5778712 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppu:PP_4604 hypothetical protein; hypothetical protein 5777786..5778712 Delftia acidovorans SPH-1 5750821 YP_001566224.1 CDS Daci_5210 NC_010002.1 5778725 5779186 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ajs:Ajs_3199 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein complement(5778725..5779186) Delftia acidovorans SPH-1 5750822 YP_001566225.1 CDS Daci_5211 NC_010002.1 5779293 5779547 D KEGG: aav:Aave_1246 hypothetical protein; hypothetical protein 5779293..5779547 Delftia acidovorans SPH-1 5750823 YP_001566226.1 CDS Daci_5212 NC_010002.1 5779556 5779900 D KEGG: ajs:Ajs_3201 hypothetical protein; hypothetical protein 5779556..5779900 Delftia acidovorans SPH-1 5750824 YP_001566227.1 CDS Daci_5213 NC_010002.1 5780196 5781131 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_1243 dihydrodipicolinate synthase; dihydrodipicolinate synthase 5780196..5781131 Delftia acidovorans SPH-1 5750825 YP_001566228.1 CDS Daci_5214 NC_010002.1 5781077 5781430 R KEGG: bbt:BBta_6747 putative resolvase (site-specific recombinase); hypothetical protein complement(5781077..5781430) Delftia acidovorans SPH-1 5750826 YP_001566229.1 CDS Daci_5215 NC_010002.1 5781436 5781711 R TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein; KEGG: aav:Aave_1242 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 complement(5781436..5781711) Delftia acidovorans SPH-1 5750827 YP_001566230.1 CDS Daci_5216 NC_010002.1 5781708 5782943 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein complement(5781708..5782943) Delftia acidovorans SPH-1 5750828 YP_001566231.1 CDS Daci_5217 NC_010002.1 5782953 5783513 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: ajs:Ajs_3204 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B complement(5782953..5783513) Delftia acidovorans SPH-1 5750829 YP_001566232.1 CDS Daci_5218 NC_010002.1 5783560 5784987 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(5783560..5784987) Delftia acidovorans SPH-1 5750830 YP_001566233.1 CDS Daci_5219 NC_010002.1 5785128 5786477 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(5785128..5786477) Delftia acidovorans SPH-1 5750831 YP_001566234.1 CDS Daci_5220 NC_010002.1 5786586 5787821 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(5786586..5787821) Delftia acidovorans SPH-1 5750832 YP_001566235.1 CDS Daci_5221 NC_010002.1 5787992 5788360 D PFAM: protein of unknown function DUF498; KEGG: aav:Aave_1236 protein of unknown function DUF498; hypothetical protein 5787992..5788360 Delftia acidovorans SPH-1 5750833 YP_001566236.1 CDS Daci_5222 NC_010002.1 5788499 5788984 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aav:Aave_1235 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 5788499..5788984 Delftia acidovorans SPH-1 5750834 YP_001566237.1 CDS Daci_5223 NC_010002.1 5789161 5790978 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: ajs:Ajs_3210 PhoH family protein; PhoH family protein 5789161..5790978 Delftia acidovorans SPH-1 5750835 YP_001566238.1 CDS Daci_5224 NC_010002.1 5790982 5791380 D KEGG: aav:Aave_1233 hypothetical protein; hypothetical protein 5790982..5791380 Delftia acidovorans SPH-1 5750836 YP_001566239.1 CDS Daci_5225 NC_010002.1 5791454 5792887 R KEGG: ajs:Ajs_3212 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(5791454..5792887) Delftia acidovorans SPH-1 5750837 YP_001566240.1 CDS Daci_5226 NC_010002.1 5793020 5793472 R PFAM: ribosomal protein L9; KEGG: ajs:Ajs_3213 ribosomal protein L9; 50S ribosomal protein L9 complement(5793020..5793472) Delftia acidovorans SPH-1 5750838 YP_001566241.1 CDS rpsR NC_010002.1 5793484 5793765 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(5793484..5793765) Delftia acidovorans SPH-1 5750839 YP_001566242.1 CDS Daci_5228 NC_010002.1 5793784 5794074 R KEGG: ajs:Ajs_3215 putative primosomal replication protein; putative primosomal replication protein complement(5793784..5794074) Delftia acidovorans SPH-1 5750840 YP_001566243.1 CDS rpsF NC_010002.1 5794101 5794463 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(5794101..5794463) Delftia acidovorans SPH-1 5750841 YP_001566244.1 CDS Daci_5230 NC_010002.1 5794771 5795316 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 5794771..5795316 Delftia acidovorans SPH-1 5750842 YP_001566245.1 CDS dnaK NC_010002.1 5795431 5797377 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 5795431..5797377 Delftia acidovorans SPH-1 5750843 YP_001566246.1 CDS Daci_5232 NC_010002.1 5797478 5798620 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 5797478..5798620 Delftia acidovorans SPH-1 5750844 YP_001566247.1 CDS Daci_5233 NC_010002.1 5798690 5799940 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(5798690..5799940) Delftia acidovorans SPH-1 5750845 YP_001566248.1 CDS Daci_5234 NC_010002.1 5800182 5801126 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3228 transcriptional regulator, LysR family; LysR family transcriptional regulator 5800182..5801126 Delftia acidovorans SPH-1 5750846 YP_001566249.1 CDS Daci_5235 NC_010002.1 5801145 5802611 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 5801145..5802611 Delftia acidovorans SPH-1 5750847 YP_001566250.1 CDS Daci_5236 NC_010002.1 5802643 5802768 D PFAM: Entericidin EcnAB; KEGG: ajs:Ajs_3230 entericidin EcnAB; entericidin EcnAB 5802643..5802768 Delftia acidovorans SPH-1 5750848 YP_001566251.1 CDS leuD NC_010002.1 5802789 5803442 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 5802789..5803442 Delftia acidovorans SPH-1 5750849 YP_001566252.1 CDS Daci_5238 NC_010002.1 5803539 5804609 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 5803539..5804609 Delftia acidovorans SPH-1 5750850 YP_001566253.1 CDS Daci_5239 NC_010002.1 5805000 5806112 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 5805000..5806112 Delftia acidovorans SPH-1 5750851 YP_001566254.1 CDS Daci_5240 NC_010002.1 5806480 5809374 D KEGG: aav:Aave_1218 putative transmembrane protein; putative transmembrane protein 5806480..5809374 Delftia acidovorans SPH-1 5750852 YP_001566255.1 CDS truA NC_010002.1 5809488 5810336 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 5809488..5810336 Delftia acidovorans SPH-1 5750853 YP_001566256.1 CDS Daci_5242 NC_010002.1 5810417 5811091 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: aav:Aave_1216 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 5810417..5811091 Delftia acidovorans SPH-1 5750854 YP_001566257.1 CDS Daci_5243 NC_010002.1 5811069 5812325 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 5811069..5812325 Delftia acidovorans SPH-1 5750855 YP_001566258.1 CDS trpA NC_010002.1 5812322 5813131 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 5812322..5813131 Delftia acidovorans SPH-1 5750856 YP_001566259.1 CDS Daci_5245 NC_010002.1 5813197 5814072 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: aav:Aave_1213 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 5813197..5814072 Delftia acidovorans SPH-1 5750857 YP_001566260.1 CDS Daci_5246 NC_010002.1 5814156 5814800 R PFAM: protein of unknown function YGGT; KEGG: aav:Aave_1212 protein of unknown function YGGT; hypothetical protein complement(5814156..5814800) Delftia acidovorans SPH-1 5750858 YP_001566261.1 CDS Daci_5247 NC_010002.1 5814804 5815478 D PFAM: peptidase S16 lon domain protein; KEGG: aav:Aave_1211 peptidase S16, lon domain protein; peptidase S16 lon domain-containing protein 5814804..5815478 Delftia acidovorans SPH-1 5750859 YP_001566262.1 CDS lysS NC_010002.1 5815724 5817283 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 5815724..5817283 Delftia acidovorans SPH-1 5750860 YP_001566263.1 CDS Daci_5249 NC_010002.1 5817376 5818392 D KEGG: rba:RB9964 hypothetical protein-transmembrane prediction; transmembrane prediction 5817376..5818392 Delftia acidovorans SPH-1 5750861 YP_001566264.1 CDS Daci_5250 NC_010002.1 5818503 5819585 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: ajs:Ajs_3251 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase 5818503..5819585 Delftia acidovorans SPH-1 5750862 YP_001566265.1 CDS Daci_5251 NC_010002.1 5819682 5820362 D KEGG: aav:Aave_1202 small-conductance mechanosensitive channel-like protein; small-conductance mechanosensitive channel-like protein 5819682..5820362 Delftia acidovorans SPH-1 5750863 YP_001566266.1 CDS purT NC_010002.1 5820430 5821647 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(5820430..5821647) Delftia acidovorans SPH-1 5750864 YP_001566267.1 CDS Daci_5253 NC_010002.1 5821758 5822420 R KEGG: pol:Bpro_3938 hypothetical protein; hypothetical protein complement(5821758..5822420) Delftia acidovorans SPH-1 5750865 YP_001566268.1 CDS Daci_5254 NC_010002.1 5822439 5823098 R PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: neu:NE0717 cold-shock DNA-binding domain; cold-shock DNA-binding domain-containing protein complement(5822439..5823098) Delftia acidovorans SPH-1 5750866 YP_001566269.1 CDS Daci_5255 NC_010002.1 5823106 5824203 R PFAM: phosphofructokinase; KEGG: ajs:Ajs_3260 6-phosphofructokinase; 6-phosphofructokinase complement(5823106..5824203) Delftia acidovorans SPH-1 5750867 YP_001566270.1 CDS Daci_5256 NC_010002.1 5824315 5825406 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: ajs:Ajs_3261 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase complement(5824315..5825406) Delftia acidovorans SPH-1 5750868 YP_001566271.1 CDS acpS NC_010002.1 5825466 5825861 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(5825466..5825861) Delftia acidovorans SPH-1 5750869 YP_001566272.1 CDS Daci_5258 NC_010002.1 5825882 5826655 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(5825882..5826655) Delftia acidovorans SPH-1 5750870 YP_001566273.1 CDS Daci_5259 NC_010002.1 5826652 5827422 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: aav:Aave_1198 DNA repair protein RecO; DNA repair protein RecO complement(5826652..5827422) Delftia acidovorans SPH-1 5750871 YP_001566274.1 CDS Daci_5260 NC_010002.1 5827450 5828484 R TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: aav:Aave_1197 GTP-binding protein Era; GTP-binding protein Era complement(5827450..5828484) Delftia acidovorans SPH-1 5750872 YP_001566275.1 CDS rnc NC_010002.1 5828481 5829164 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(5828481..5829164) Delftia acidovorans SPH-1 5750873 YP_001566276.1 CDS Daci_5262 NC_010002.1 5829165 5829527 R KEGG: aav:Aave_1195 putative transmembrane protein; putative transmembrane protein complement(5829165..5829527) Delftia acidovorans SPH-1 5750874 YP_001566277.1 CDS Daci_5263 NC_010002.1 5829608 5830585 R KEGG: aav:Aave_1194 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(5829608..5830585) Delftia acidovorans SPH-1 5750875 YP_001566278.1 CDS Daci_5264 NC_010002.1 5830585 5832393 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(5830585..5832393) Delftia acidovorans SPH-1 5750876 YP_001566279.1 CDS Daci_5265 NC_010002.1 5832822 5834318 R KEGG: aav:Aave_1192 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(5832822..5834318) Delftia acidovorans SPH-1 5750877 YP_001566280.1 CDS Daci_5266 NC_010002.1 5834599 5835315 R PFAM: Anti sigma-E protein RseA family protein; KEGG: ajs:Ajs_3273 anti sigma-E protein, RseA; anti sigma-E protein RseA complement(5834599..5835315) Delftia acidovorans SPH-1 5750878 YP_001566281.1 CDS Daci_5267 NC_010002.1 5835393 5836064 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(5835393..5836064) Delftia acidovorans SPH-1 5750879 YP_001566282.1 CDS Daci_5268 NC_010002.1 5836668 5837912 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: ajs:Ajs_3276 beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(5836668..5837912) Delftia acidovorans SPH-1 5750880 YP_001566283.1 CDS acpP NC_010002.1 5837952 5838191 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(5837952..5838191) Delftia acidovorans SPH-1 5750881 YP_001566284.1 CDS Daci_5270 NC_010002.1 5838341 5839087 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_3278 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(5838341..5839087) Delftia acidovorans SPH-1 5750882 YP_001566285.1 CDS Daci_5271 NC_010002.1 5839084 5840085 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ajs:Ajs_3279 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(5839084..5840085) Delftia acidovorans SPH-1 5750883 YP_001566286.1 CDS Daci_5272 NC_010002.1 5840085 5841062 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(5840085..5841062) Delftia acidovorans SPH-1 5750884 YP_001566287.1 CDS Daci_5273 NC_010002.1 5841068 5842108 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(5841068..5842108) Delftia acidovorans SPH-1 5750885 YP_001566288.1 CDS rpmF NC_010002.1 5842222 5842404 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(5842222..5842404) Delftia acidovorans SPH-1 5750886 YP_001566289.1 CDS Daci_5275 NC_010002.1 5842542 5843099 R PFAM: protein of unknown function DUF177; KEGG: ajs:Ajs_3283 protein of unknown function DUF177; hypothetical protein complement(5842542..5843099) Delftia acidovorans SPH-1 5750887 YP_001566290.1 CDS Daci_5276 NC_010002.1 5843125 5843745 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ajs:Ajs_3284 maf protein; maf protein 5843125..5843745 Delftia acidovorans SPH-1 5750888 YP_001566291.1 CDS Daci_5277 NC_010002.1 5843742 5844533 D KEGG: ajs:Ajs_3285 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 5843742..5844533 Delftia acidovorans SPH-1 5750889 YP_001566292.1 CDS Daci_5278 NC_010002.1 5844620 5845666 R PFAM: peptidase S49; KEGG: aav:Aave_1177 peptidase S49; peptidase S49 complement(5844620..5845666) Delftia acidovorans SPH-1 5750890 YP_001566293.1 CDS Daci_5279 NC_010002.1 5845668 5846042 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_1176 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(5845668..5846042) Delftia acidovorans SPH-1 5750891 YP_001566294.1 CDS Daci_5280 NC_010002.1 5846086 5846772 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_3288 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(5846086..5846772) Delftia acidovorans SPH-1 5750892 YP_001566295.1 CDS Daci_5281 NC_010002.1 5846797 5847885 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: aav:Aave_1174 pseudouridine synthase, RluA family; RluA family pseudouridine synthase complement(5846797..5847885) Delftia acidovorans SPH-1 5750893 YP_001566296.1 CDS Daci_5282 NC_010002.1 5848394 5851528 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: ajs:Ajs_3290 ribonuclease, Rne/Rng family; ribonuclease 5848394..5851528 Delftia acidovorans SPH-1 5750894 YP_001566297.1 CDS Daci_5283 NC_010002.1 5851647 5852432 D PFAM: protein of unknown function DUF328; KEGG: ajs:Ajs_3291 protein of unknown function DUF328; hypothetical protein 5851647..5852432 Delftia acidovorans SPH-1 5750895 YP_001566298.1 CDS Daci_5284 NC_010002.1 5852513 5853397 D KEGG: aav:Aave_1171 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; procollagen-proline dioxygenase 5852513..5853397 Delftia acidovorans SPH-1 5750896 YP_001566299.1 CDS queF NC_010002.1 5853553 5854401 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 5853553..5854401 Delftia acidovorans SPH-1 5750897 YP_001566300.1 CDS Daci_5286 NC_010002.1 5854425 5855984 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: ajs:Ajs_3295 methyl-accepting chemotaxis sensory transducer; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer complement(5854425..5855984) Delftia acidovorans SPH-1 5750898 YP_001566301.1 CDS Daci_5287 NC_010002.1 5856176 5857489 R PFAM: UMUC domain protein DNA-repair protein; KEGG: aav:Aave_1964 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(5856176..5857489) Delftia acidovorans SPH-1 5750899 YP_001566302.1 CDS Daci_5288 NC_010002.1 5857532 5858530 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_3297 hypothetical protein; hypothetical protein complement(5857532..5858530) Delftia acidovorans SPH-1 5750900 YP_001566303.1 CDS Daci_5289 NC_010002.1 5858703 5859530 R KEGG: pna:Pnap_1085 putative transmembrane protein; putative transmembrane protein complement(5858703..5859530) Delftia acidovorans SPH-1 5750901 YP_001566304.1 CDS Daci_5290 NC_010002.1 5859568 5860152 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pna:Pnap_1084 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(5859568..5860152) Delftia acidovorans SPH-1 5750902 YP_001566305.1 CDS Daci_5291 NC_010002.1 5860297 5861013 D KEGG: aav:Aave_1961 hypothetical protein; hypothetical protein 5860297..5861013 Delftia acidovorans SPH-1 5750903 YP_001566306.1 CDS Daci_5292 NC_010002.1 5861029 5861961 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_4124 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5861029..5861961) Delftia acidovorans SPH-1 5750904 YP_001566307.1 CDS Daci_5293 NC_010002.1 5862195 5863895 D PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pfl:PFL_4123 2-isopropylmalate synthase; 2-isopropylmalate synthase 5862195..5863895 Delftia acidovorans SPH-1 5750905 YP_001566308.1 CDS Daci_5294 NC_010002.1 5863959 5865134 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: vei:Veis_3178 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase complement(5863959..5865134) Delftia acidovorans SPH-1 5750906 YP_001566309.1 CDS Daci_5295 NC_010002.1 5865354 5867012 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: ajs:Ajs_4067 L-lactate transport; L-lactate transport 5865354..5867012 Delftia acidovorans SPH-1 5750907 YP_001566310.1 CDS Daci_5296 NC_010002.1 5867168 5868181 D PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: kpn:KPN_01851 putative bacterial regulatory protein, MarR; MarR family transcriptional regulator 5867168..5868181 Delftia acidovorans SPH-1 5750908 YP_001566311.1 CDS Daci_5297 NC_010002.1 5868183 5868734 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: vei:Veis_4799 cupin 2, conserved barrel domain protein; cupin complement(5868183..5868734) Delftia acidovorans SPH-1 5750909 YP_001566312.1 CDS Daci_5298 NC_010002.1 5868760 5869704 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_4798 uncharacterized protein UPF0065; hypothetical protein complement(5868760..5869704) Delftia acidovorans SPH-1 5750910 YP_001566313.1 CDS Daci_5299 NC_010002.1 5869833 5870516 D PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C0212 transcriptional regulator, TetR family; TetR family transcriptional regulator 5869833..5870516 Delftia acidovorans SPH-1 5750911 YP_001566314.1 CDS Daci_5300 NC_010002.1 5870534 5872858 R TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; penicillin-binding protein 1C complement(5870534..5872858) Delftia acidovorans SPH-1 5750912 YP_001566315.1 CDS Daci_5301 NC_010002.1 5872892 5873452 R KEGG: net:Neut_2430 hypothetical protein; hypothetical protein complement(5872892..5873452) Delftia acidovorans SPH-1 5750913 YP_001566316.1 CDS Daci_5302 NC_010002.1 5873547 5874416 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_3303 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(5873547..5874416) Delftia acidovorans SPH-1 5750914 YP_001566317.1 CDS Daci_5303 NC_010002.1 5874413 5874802 R KEGG: xcb:XC_0339 hypothetical protein; hypothetical protein complement(5874413..5874802) Delftia acidovorans SPH-1 5750915 YP_001566318.1 CDS Daci_5304 NC_010002.1 5874851 5875699 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5874851..5875699) Delftia acidovorans SPH-1 5750916 YP_001566319.1 CDS Daci_5305 NC_010002.1 5875696 5876592 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3305 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5875696..5876592) Delftia acidovorans SPH-1 5750917 YP_001566320.1 CDS Daci_5306 NC_010002.1 5876614 5877909 R PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3306 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(5876614..5877909) Delftia acidovorans SPH-1 5750918 YP_001566321.1 CDS Daci_5307 NC_010002.1 5878001 5879068 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3307 ABC transporter related; ABC transporter-like protein complement(5878001..5879068) Delftia acidovorans SPH-1 5750919 YP_001566322.1 CDS Daci_5308 NC_010002.1 5879135 5880535 R PFAM: Amidase; KEGG: bra:BRADO4407 putative amidase; amidase complement(5879135..5880535) Delftia acidovorans SPH-1 5750920 YP_001566323.1 CDS Daci_5309 NC_010002.1 5880667 5881611 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppf:Pput_2723 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(5880667..5881611) Delftia acidovorans SPH-1 5750921 YP_001566324.1 CDS Daci_5310 NC_010002.1 5881707 5883803 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ajs:Ajs_3308 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(5881707..5883803) Delftia acidovorans SPH-1 5750922 YP_001566325.1 CDS Daci_5311 NC_010002.1 5884023 5884550 R KEGG: azo:azo2571 hypothetical protein; hypothetical protein complement(5884023..5884550) Delftia acidovorans SPH-1 5750923 YP_001566326.1 CDS Daci_5312 NC_010002.1 5884639 5890623 R PFAM: alpha-2-macroglobulin domain protein; KEGG: aav:Aave_1953 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain-containing protein complement(5884639..5890623) Delftia acidovorans SPH-1 5750924 YP_001566327.1 CDS Daci_5313 NC_010002.1 5891122 5892447 D KEGG: hch:HCH_02671 hypothetical protein; hypothetical protein 5891122..5892447 Delftia acidovorans SPH-1 5750925 YP_001566328.1 CDS Daci_5314 NC_010002.1 5892448 5893938 R PFAM: Rhomboid family protein; KEGG: xcv:XCV2885 putative rhomboid family membrane protein; rhomboid family protein complement(5892448..5893938) Delftia acidovorans SPH-1 5750926 YP_001566329.1 CDS Daci_5315 NC_010002.1 5893960 5894958 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3311 uncharacterized protein UPF0065; hypothetical protein complement(5893960..5894958) Delftia acidovorans SPH-1 5750927 YP_001566330.1 CDS Daci_5316 NC_010002.1 5894983 5896464 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(5894983..5896464) Delftia acidovorans SPH-1 5750928 YP_001566331.1 CDS Daci_5317 NC_010002.1 5896728 5897822 D PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: vei:Veis_1353 histidine kinase internal region; histidine kinase internal region 5896728..5897822 Delftia acidovorans SPH-1 5750929 YP_001566332.1 CDS Daci_5318 NC_010002.1 5897803 5898564 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aav:Aave_1947 response regulator receiver protein; LytTR family two component transcriptional regulator 5897803..5898564 Delftia acidovorans SPH-1 5750930 YP_001566333.1 CDS Daci_5319 NC_010002.1 5898735 5900222 R PFAM: aminotransferase class V; KEGG: aav:Aave_1124 aminotransferase, class V; class V aminotransferase complement(5898735..5900222) Delftia acidovorans SPH-1 5750931 YP_001566334.1 CDS Daci_5320 NC_010002.1 5900250 5900720 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_1123 putative endoribonuclease L-PSP; endoribonuclease L-PSP complement(5900250..5900720) Delftia acidovorans SPH-1 5750932 YP_001566335.1 CDS Daci_5321 NC_010002.1 5901367 5902779 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: aav:Aave_1122 histidine kinase; histidine kinase 5901367..5902779 Delftia acidovorans SPH-1 5750933 YP_001566336.1 CDS Daci_5322 NC_010002.1 5902776 5903438 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_1121 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 5902776..5903438 Delftia acidovorans SPH-1 5750934 YP_001566337.1 CDS Daci_5323 NC_010002.1 5903467 5904300 R PFAM: zinc/iron permease; KEGG: aav:Aave_1944 zinc/iron permease; zinc/iron permease complement(5903467..5904300) Delftia acidovorans SPH-1 5750935 YP_001566338.1 CDS Daci_5324 NC_010002.1 5904473 5905369 R PFAM: dienelactone hydrolase; KEGG: ajs:Ajs_3316 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(5904473..5905369) Delftia acidovorans SPH-1 5750936 YP_001566339.1 CDS Daci_5325 NC_010002.1 5905427 5908270 R KEGG: aav:Aave_1930 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(5905427..5908270) Delftia acidovorans SPH-1 5750937 YP_001566340.1 CDS Daci_5326 NC_010002.1 5908343 5908714 D KEGG: aav:Aave_1929 hypothetical protein; hypothetical protein 5908343..5908714 Delftia acidovorans SPH-1 5750938 YP_001566341.1 CDS Daci_5327 NC_010002.1 5908839 5909795 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 5908839..5909795 Delftia acidovorans SPH-1 5750939 YP_001566342.1 CDS Daci_5328 NC_010002.1 5909942 5910775 D KEGG: ajs:Ajs_3321 hypothetical protein; hypothetical protein 5909942..5910775 Delftia acidovorans SPH-1 5750940 YP_001566343.1 CDS Daci_5329 NC_010002.1 5911070 5913022 D KEGG: aav:Aave_1926 putative exported alkaline phosphatase; putative exported alkaline phosphatase 5911070..5913022 Delftia acidovorans SPH-1 5750941 YP_001566344.1 CDS Daci_5330 NC_010002.1 5913298 5913930 D KEGG: mms:mma_3481 hypothetical protein; hypothetical protein 5913298..5913930 Delftia acidovorans SPH-1 5750942 YP_001566345.1 CDS Daci_5331 NC_010002.1 5913955 5916423 R PFAM: UvrD/REP helicase; KEGG: aav:Aave_1916 UvrD/REP helicase; UvrD/REP helicase complement(5913955..5916423) Delftia acidovorans SPH-1 5750943 YP_001566346.1 CDS Daci_5332 NC_010002.1 5916754 5917731 D TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: ajs:Ajs_3326 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase 5916754..5917731 Delftia acidovorans SPH-1 5750944 YP_001566347.1 CDS Daci_5333 NC_010002.1 5918281 5919279 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: reh:H16_A1508 TRAP-type transporter, periplasmic component; TRAP dicarboxylate transporter subunit DctP complement(5918281..5919279) Delftia acidovorans SPH-1 5750948 YP_001566348.1 CDS Daci_5334 NC_010002.1 5919546 5920778 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_1896 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 5919546..5920778 Delftia acidovorans SPH-1 5750949 YP_001566349.1 CDS Daci_5335 NC_010002.1 5920801 5922270 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1895 diguanylate cyclase; diguanylate cyclase complement(5920801..5922270) Delftia acidovorans SPH-1 5750950 YP_001566350.1 CDS Daci_5336 NC_010002.1 5922422 5924545 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_1894 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(5922422..5924545) Delftia acidovorans SPH-1 5750951 YP_001566351.1 CDS Daci_5337 NC_010002.1 5924720 5926747 D PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_1892 STE24 endopeptidase; Ste24 endopeptidase 5924720..5926747 Delftia acidovorans SPH-1 5750952 YP_001566352.1 CDS Daci_5338 NC_010002.1 5926779 5927096 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: ajs:Ajs_3348 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 5926779..5927096 Delftia acidovorans SPH-1 5750953 YP_001566353.1 CDS Daci_5339 NC_010002.1 5927115 5928083 D TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: ajs:Ajs_3349 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 5927115..5928083 Delftia acidovorans SPH-1 5750954 YP_001566354.1 CDS Daci_5340 NC_010002.1 5928172 5929182 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: vei:Veis_0320 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB complement(5928172..5929182) Delftia acidovorans SPH-1 5750955 YP_001566355.1 CDS Daci_5341 NC_010002.1 5929230 5929958 R PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase; NUDIX hydrolase complement(5929230..5929958) Delftia acidovorans SPH-1 5750956 YP_001566356.1 CDS Daci_5342 NC_010002.1 5930046 5930486 R PFAM: ribosomal protein L19; KEGG: ajs:Ajs_3352 ribosomal protein L19; 50S ribosomal protein L19 complement(5930046..5930486) Delftia acidovorans SPH-1 5750957 YP_001566357.1 CDS trmD NC_010002.1 5930537 5931307 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(5930537..5931307) Delftia acidovorans SPH-1 5750958 YP_001566358.1 CDS rimM NC_010002.1 5931320 5931889 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(5931320..5931889) Delftia acidovorans SPH-1 5750959 YP_001566359.1 CDS Daci_5345 NC_010002.1 5932022 5932276 R PFAM: ribosomal protein S16; KEGG: ajs:Ajs_3355 ribosomal protein S16; 30S ribosomal protein S16 complement(5932022..5932276) Delftia acidovorans SPH-1 5750960 YP_001566360.1 CDS Daci_5346 NC_010002.1 5932423 5932947 D PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3356 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5932423..5932947 Delftia acidovorans SPH-1 5750961 YP_001566361.1 CDS Daci_5347 NC_010002.1 5932955 5933461 D KEGG: aav:Aave_1882 hypothetical protein; hypothetical protein 5932955..5933461 Delftia acidovorans SPH-1 5750962 YP_001566362.1 CDS Daci_5348 NC_010002.1 5933529 5934539 R PFAM: phosphate transporter; KEGG: ajs:Ajs_3358 phosphate transporter; phosphate transporter complement(5933529..5934539) Delftia acidovorans SPH-1 5750963 YP_001566363.1 CDS Daci_5349 NC_010002.1 5934562 5935209 R PFAM: protein of unknown function DUF47; KEGG: aav:Aave_1880 protein of unknown function DUF47; hypothetical protein complement(5934562..5935209) Delftia acidovorans SPH-1 5750964 YP_001566364.1 CDS Daci_5350 NC_010002.1 5935352 5935714 R PFAM: protein of unknown function DUF486; KEGG: ajs:Ajs_3360 protein of unknown function DUF486; hypothetical protein complement(5935352..5935714) Delftia acidovorans SPH-1 5750965 YP_001566365.1 CDS Daci_5351 NC_010002.1 5935967 5936713 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1878 ABC transporter-related protein; ABC transporter-like protein complement(5935967..5936713) Delftia acidovorans SPH-1 5750966 YP_001566366.1 CDS Daci_5352 NC_010002.1 5936717 5937511 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1877 ABC transporter-related protein; ABC transporter-like protein complement(5936717..5937511) Delftia acidovorans SPH-1 5750967 YP_001566367.1 CDS Daci_5353 NC_010002.1 5937529 5938608 R PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3363 inner-membrane translocator; inner-membrane translocator complement(5937529..5938608) Delftia acidovorans SPH-1 5750968 YP_001566368.1 CDS Daci_5354 NC_010002.1 5938619 5939548 R PFAM: inner-membrane translocator; KEGG: aav:Aave_1875 inner-membrane translocator; inner-membrane translocator complement(5938619..5939548) Delftia acidovorans SPH-1 5750969 YP_001566369.1 CDS Daci_5355 NC_010002.1 5939854 5940201 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bbr:BB2410 hypothetical protein; glutathione-dependent formaldehyde-activating protein 5939854..5940201 Delftia acidovorans SPH-1 5750970 YP_001566370.1 CDS Daci_5356 NC_010002.1 5940210 5940815 R PFAM: DSBA oxidoreductase; KEGG: reu:Reut_C6061 DsbA oxidoreductase; DSBA oxidoreductase complement(5940210..5940815) Delftia acidovorans SPH-1 5750971 YP_001566371.1 CDS Daci_5357 NC_010002.1 5940896 5941624 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_4197 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(5940896..5941624) Delftia acidovorans SPH-1 5750972 YP_001566372.1 CDS Daci_5358 NC_010002.1 5941715 5942164 D PFAM: helix-turn-helix HxlR type; KEGG: bbt:BBta_5152 hypothetical protein; HxlR family transcriptional regulator 5941715..5942164 Delftia acidovorans SPH-1 5750973 YP_001566373.1 CDS Daci_5359 NC_010002.1 5942197 5943501 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mms:mma_1156 hypothetical protein; recombination factor protein RarA complement(5942197..5943501) Delftia acidovorans SPH-1 5750974 YP_001566374.1 CDS Daci_5360 NC_010002.1 5943945 5945258 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: pap:PSPA7_3684 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 5943945..5945258 Delftia acidovorans SPH-1 5750975 YP_001566375.1 CDS Daci_5361 NC_010002.1 5945245 5946771 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bur:Bcep18194_A4084 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5945245..5946771) Delftia acidovorans SPH-1 5750976 YP_001566376.1 CDS Daci_5362 NC_010002.1 5946940 5947575 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(5946940..5947575) Delftia acidovorans SPH-1 5750977 YP_001566377.1 CDS Daci_5363 NC_010002.1 5947605 5949968 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: ajs:Ajs_3382 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(5947605..5949968) Delftia acidovorans SPH-1 5750978 YP_001566378.1 CDS Daci_5364 NC_010002.1 5950171 5951184 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3383 thioredoxin reductase; thioredoxin reductase 5950171..5951184 Delftia acidovorans SPH-1 5750979 YP_001566379.1 CDS rpmB NC_010002.1 5951453 5951686 D required for 70S ribosome assembly; 50S ribosomal protein L28 5951453..5951686 Delftia acidovorans SPH-1 5750980 YP_001566380.1 CDS rpmG NC_010002.1 5951707 5951877 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 5951707..5951877 Delftia acidovorans SPH-1 5750981 YP_001566381.1 CDS Daci_5367 NC_010002.1 5951998 5953482 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: aav:Aave_3430 transcriptional regulator, GntR family; transcriptional regulator complement(5951998..5953482) Delftia acidovorans SPH-1 5750982 YP_001566382.1 CDS Daci_5368 NC_010002.1 5953518 5954063 D hypothetical protein 5953518..5954063 Delftia acidovorans SPH-1 5750983 YP_001566383.1 CDS Daci_5369 NC_010002.1 5954038 5955261 R PFAM: fatty acid desaturase; KEGG: ajs:Ajs_3386 fatty acid desaturase; fatty acid desaturase complement(5954038..5955261) Delftia acidovorans SPH-1 5750984 YP_001566384.1 CDS Daci_5370 NC_010002.1 5955377 5956789 R PFAM: Fmu (Sun) domain protein; KEGG: aav:Aave_3433 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein complement(5955377..5956789) Delftia acidovorans SPH-1 5750985 YP_001566385.1 CDS Daci_5371 NC_010002.1 5956798 5957070 D PFAM: protein of unknown function DUF1653; KEGG: ajs:Ajs_3389 protein of unknown function DUF1653; hypothetical protein 5956798..5957070 Delftia acidovorans SPH-1 5750986 YP_001566386.1 CDS purN NC_010002.1 5957078 5957656 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(5957078..5957656) Delftia acidovorans SPH-1 5750987 YP_001566387.1 CDS Daci_5373 NC_010002.1 5957713 5958435 D PFAM: protein of unknown function DUF480; KEGG: aav:Aave_3438 protein of unknown function DUF480; hypothetical protein 5957713..5958435 Delftia acidovorans SPH-1 5750988 YP_001566388.1 CDS Daci_5374 NC_010002.1 5958589 5959770 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pna:Pnap_3224 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 5958589..5959770 Delftia acidovorans SPH-1 5750989 YP_001566389.1 CDS Daci_5375 NC_010002.1 5959840 5960955 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_3440 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 5959840..5960955 Delftia acidovorans SPH-1 5750990 YP_001566390.1 CDS Daci_5376 NC_010002.1 5961046 5961993 R PFAM: protein of unknown function UPF0187; KEGG: pna:Pnap_3226 protein of unknown function UPF0187; hypothetical protein complement(5961046..5961993) Delftia acidovorans SPH-1 5750991 YP_001566391.1 CDS Daci_5377 NC_010002.1 5962116 5963858 R KEGG: aav:Aave_4277 conserved repeat domain; hypothetical protein complement(5962116..5963858) Delftia acidovorans SPH-1 5750992 YP_001566392.1 CDS Daci_5378 NC_010002.1 5964030 5964731 R PFAM: response regulator receiver; KEGG: mfa:Mfla_2394 two component transcriptional regulator, winged helix family; response regulator receiver protein complement(5964030..5964731) Delftia acidovorans SPH-1 5750993 YP_001566393.1 CDS Daci_5379 NC_010002.1 5964783 5966879 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; KEGG: kpn:KPN_02522 putative signal transduction histidine kinase; histidine kinase 5964783..5966879 Delftia acidovorans SPH-1 5750994 YP_001566394.1 CDS Daci_5380 NC_010002.1 5966867 5968936 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; KEGG: kpn:KPN_02522 putative signal transduction histidine kinase; histidine kinase 5966867..5968936 Delftia acidovorans SPH-1 5750995 YP_001566395.1 CDS Daci_5381 NC_010002.1 5969050 5970366 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: aav:Aave_3443 methyltransferase type 12; type 11 methyltransferase 5969050..5970366 Delftia acidovorans SPH-1 5750996 YP_001566396.1 CDS Daci_5382 NC_010002.1 5970377 5970985 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: vei:Veis_2107 HNH endonuclease; HNH endonuclease complement(5970377..5970985) Delftia acidovorans SPH-1 5750997 YP_001566397.1 CDS Daci_5383 NC_010002.1 5971143 5972192 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 5971143..5972192 Delftia acidovorans SPH-1 5750998 YP_001566398.1 CDS Daci_5384 NC_010002.1 5972298 5975153 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: ajs:Ajs_3399 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 5972298..5975153 Delftia acidovorans SPH-1 5750999 YP_001566399.1 CDS Daci_5385 NC_010002.1 5975174 5975689 D KEGG: ajs:Ajs_3400 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 5975174..5975689 Delftia acidovorans SPH-1 5751000 YP_001566400.1 CDS Daci_5386 NC_010002.1 5975879 5977612 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; Na/Pi-cotransporter II-like protein 5975879..5977612 Delftia acidovorans SPH-1 5751001 YP_001566401.1 CDS Daci_5387 NC_010002.1 5977619 5978470 R PFAM: NUDIX hydrolase; KEGG: aav:Aave_3467 NUDIX hydrolase; NUDIX hydrolase complement(5977619..5978470) Delftia acidovorans SPH-1 5751002 YP_001566402.1 CDS Daci_5388 NC_010002.1 5978467 5979447 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aav:Aave_3468 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(5978467..5979447) Delftia acidovorans SPH-1 5751003 YP_001566403.1 CDS Daci_5389 NC_010002.1 5979584 5980486 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: aav:Aave_3469 protein of unknown function DUF6, transmembrane; hypothetical protein 5979584..5980486 Delftia acidovorans SPH-1 5751004 YP_001566404.1 CDS Daci_5390 NC_010002.1 5980461 5983211 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: aav:Aave_3487 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(5980461..5983211) Delftia acidovorans SPH-1 5751005 YP_001566405.1 CDS Daci_5391 NC_010002.1 5983398 5984195 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1080 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(5983398..5984195) Delftia acidovorans SPH-1 5751006 YP_001566406.1 CDS Daci_5392 NC_010002.1 5984353 5985669 R KEGG: pol:Bpro_3879 hypothetical protein; hypothetical protein complement(5984353..5985669) Delftia acidovorans SPH-1 5751007 YP_001566407.1 CDS Daci_5393 NC_010002.1 5985822 5987333 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane; hypothetical protein complement(5985822..5987333) Delftia acidovorans SPH-1 5751008 YP_001566408.1 CDS Daci_5394 NC_010002.1 5987349 5987837 R PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 protein of unknown function DUF1468; hypothetical protein complement(5987349..5987837) Delftia acidovorans SPH-1 5751009 YP_001566409.1 CDS Daci_5395 NC_010002.1 5988045 5989847 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: aav:Aave_1068 type II secretion system protein E; type II secretion system protein E complement(5988045..5989847) Delftia acidovorans SPH-1 5751010 YP_001566410.1 CDS Daci_5396 NC_010002.1 5989946 5990770 R KEGG: aav:Aave_1067 hypothetical protein; hypothetical protein complement(5989946..5990770) Delftia acidovorans SPH-1 5751011 YP_001566411.1 CDS Daci_5397 NC_010002.1 5990775 5991320 R KEGG: aav:Aave_1066 hypothetical protein; hypothetical protein complement(5990775..5991320) Delftia acidovorans SPH-1 5751012 YP_001566412.1 CDS Daci_5398 NC_010002.1 5991396 5992277 R PFAM: TatD-related deoxyribonuclease; KEGG: vei:Veis_4583 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(5991396..5992277) Delftia acidovorans SPH-1 5751013 YP_001566413.1 CDS Daci_5399 NC_010002.1 5992432 5993898 D KEGG: xac:XAC1746 chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 5992432..5993898 Delftia acidovorans SPH-1 5751014 YP_001566414.1 CDS Daci_5400 NC_010002.1 5993920 5994636 R KEGG: ajs:Ajs_3420 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system ATP-binding protein complement(5993920..5994636) Delftia acidovorans SPH-1 5751015 YP_001566415.1 CDS Daci_5401 NC_010002.1 5994629 5995900 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3421 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(5994629..5995900) Delftia acidovorans SPH-1 5751016 YP_001566416.1 CDS Daci_5402 NC_010002.1 5995944 5996450 R PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: aav:Aave_4468 transcriptional regulator, TrmB; transcriptional regulator TrmB complement(5995944..5996450) Delftia acidovorans SPH-1 5751017 YP_001566417.1 CDS Daci_5403 NC_010002.1 5996594 5997616 D PFAM: conserved hypothetical protein; KEGG: bbr:BB2467 hypothetical protein; hypothetical protein 5996594..5997616 Delftia acidovorans SPH-1 5751018 YP_001566418.1 CDS Daci_5404 NC_010002.1 5997613 5998986 D PFAM: sulfatase; KEGG: vei:Veis_2294 sulfatase; sulfatase 5997613..5998986 Delftia acidovorans SPH-1 5751019 YP_001566419.1 CDS Daci_5405 NC_010002.1 5999053 6000051 D KEGG: aav:Aave_3701 hypothetical protein; hypothetical protein 5999053..6000051 Delftia acidovorans SPH-1 5751020 YP_001566420.1 CDS Daci_5406 NC_010002.1 6000062 6001780 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 6000062..6001780 Delftia acidovorans SPH-1 5751021 YP_001566421.1 CDS Daci_5407 NC_010002.1 6001878 6002558 D PFAM: Curli production assembly/transport component CsgG; KEGG: eca:ECA4460 putative lipoprotein; curli production assembly/transport component CsgG 6001878..6002558 Delftia acidovorans SPH-1 5751022 YP_001566422.1 CDS Daci_5408 NC_010002.1 6002555 6002929 D KEGG: ajs:Ajs_3428 hypothetical protein; hypothetical protein 6002555..6002929 Delftia acidovorans SPH-1 5751023 YP_001566423.1 CDS Daci_5409 NC_010002.1 6002931 6003593 D PFAM: protein of unknown function DUF799; KEGG: ajs:Ajs_3429 protein of unknown function DUF799; hypothetical protein 6002931..6003593 Delftia acidovorans SPH-1 5751024 YP_001566424.1 CDS Daci_5410 NC_010002.1 6003652 6005559 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(6003652..6005559) Delftia acidovorans SPH-1 5751025 YP_001566425.1 CDS Daci_5411 NC_010002.1 6005652 6006515 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ajs:Ajs_3431 PHP C-terminal domain protein; phosphotransferase domain-containing protein 6005652..6006515 Delftia acidovorans SPH-1 5751026 YP_001566426.1 CDS Daci_5412 NC_010002.1 6006541 6007185 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: aav:Aave_3708 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 6006541..6007185 Delftia acidovorans SPH-1 5751027 YP_001566427.1 CDS Daci_5413 NC_010002.1 6007291 6008685 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rme:Rmet_4185 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(6007291..6008685) Delftia acidovorans SPH-1 5751028 YP_001566428.1 CDS Daci_5414 NC_010002.1 6008715 6009497 D PFAM: peptidase M50; KEGG: aav:Aave_3710 peptidase M50; peptidase M50 6008715..6009497 Delftia acidovorans SPH-1 5751029 YP_001566429.1 CDS Daci_5415 NC_010002.1 6009573 6010865 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 6009573..6010865 Delftia acidovorans SPH-1 5751030 YP_001566430.1 CDS Daci_5416 NC_010002.1 6010960 6011673 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aav:Aave_4276 two component transcriptional regulator, winged helix family; two component transcriptional regulator 6010960..6011673 Delftia acidovorans SPH-1 5751031 YP_001566431.1 CDS Daci_5417 NC_010002.1 6011682 6013457 D PFAM: Peptidoglycan-binding LysM; KEGG: mfa:Mfla_0431 peptidoglycan-binding LysM; peptidoglycan-binding LysM 6011682..6013457 Delftia acidovorans SPH-1 5751032 YP_001566432.1 CDS Daci_5418 NC_010002.1 6013485 6015854 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE2 domain protein; KEGG: mms:mma_0215 two-component sensor histidine kinase; histidine kinase 6013485..6015854 Delftia acidovorans SPH-1 5751033 YP_001566433.1 CDS hrcA NC_010002.1 6016329 6017333 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(6016329..6017333) Delftia acidovorans SPH-1 5751036 YP_001566434.1 CDS ppnK NC_010002.1 6017364 6018260 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 6017364..6018260 Delftia acidovorans SPH-1 5751037 YP_001566435.1 CDS Daci_5421 NC_010002.1 6018263 6020038 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: vei:Veis_1052 DNA repair protein RecN; DNA repair protein RecN 6018263..6020038 Delftia acidovorans SPH-1 5751038 YP_001566436.1 CDS Daci_5422 NC_010002.1 6020043 6020945 D PFAM: conserved hypothetical protein; KEGG: vei:Veis_1053 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 6020043..6020945 Delftia acidovorans SPH-1 5751039 YP_001566437.1 CDS Daci_5423 NC_010002.1 6020975 6021694 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0237 two component transcriptional regulator, winged helix family; two component transcriptional regulator 6020975..6021694 Delftia acidovorans SPH-1 5751040 YP_001566438.1 CDS Daci_5424 NC_010002.1 6021711 6023171 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 6021711..6023171 Delftia acidovorans SPH-1 5751041 YP_001566439.1 CDS Daci_5425 NC_010002.1 6023283 6024716 D PFAM: Inner membrane CreD family protein; KEGG: aav:Aave_0316 inner membrane CreD family protein; hypothetical protein 6023283..6024716 Delftia acidovorans SPH-1 5751042 YP_001566440.1 CDS Daci_5426 NC_010002.1 6024713 6024955 D hypothetical protein 6024713..6024955 Delftia acidovorans SPH-1 5751043 YP_001566441.1 CDS Daci_5427 NC_010002.1 6024977 6026047 R KEGG: aav:Aave_3604 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(6024977..6026047) Delftia acidovorans SPH-1 5751044 YP_001566442.1 CDS Daci_5428 NC_010002.1 6026052 6028070 R KEGG: ajs:Ajs_0900 hypothetical protein; hypothetical protein complement(6026052..6028070) Delftia acidovorans SPH-1 5751045 YP_001566443.1 CDS Daci_5429 NC_010002.1 6028386 6029216 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(6028386..6029216) Delftia acidovorans SPH-1 5751046 YP_001566444.1 CDS Daci_5430 NC_010002.1 6029278 6031065 D PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ajs:Ajs_0898 TPR repeat-containing protein; hypothetical protein 6029278..6031065 Delftia acidovorans SPH-1 5751047 YP_001566445.1 CDS Daci_5431 NC_010002.1 6031062 6031610 D PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein; outer membrane lipoprotein LolB 6031062..6031610 Delftia acidovorans SPH-1 5751048 YP_001566446.1 CDS ipk NC_010002.1 6031681 6032544 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 6031681..6032544 Delftia acidovorans SPH-1 5751049 YP_001566447.1 CDS Daci_5433 NC_010002.1 6032695 6033654 D KEGG: vei:Veis_0951 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 6032695..6033654 Delftia acidovorans SPH-1 5751051 YP_001566448.1 CDS Daci_5434 NC_010002.1 6033828 6034457 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 6033828..6034457 Delftia acidovorans SPH-1 5751052 YP_001566449.1 CDS Daci_5435 NC_010002.1 6034584 6035207 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 6034584..6035207 Delftia acidovorans SPH-1 5751053 YP_001566450.1 CDS Daci_5436 NC_010002.1 6035212 6035475 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aav:Aave_3613 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(6035212..6035475) Delftia acidovorans SPH-1 5751054 YP_001566451.1 CDS Daci_5437 NC_010002.1 6035679 6036746 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3614 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 6035679..6036746 Delftia acidovorans SPH-1 5751055 YP_001566452.1 CDS Daci_5438 NC_010002.1 6036743 6037666 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3615 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 6036743..6037666 Delftia acidovorans SPH-1 5751056 YP_001566453.1 CDS Daci_5439 NC_010002.1 6037682 6038734 D KEGG: vei:Veis_0137 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 6037682..6038734 Delftia acidovorans SPH-1 5751057 YP_001566454.1 CDS Daci_5440 NC_010002.1 6038731 6039588 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0888 ABC transporter related; ABC transporter-like protein 6038731..6039588 Delftia acidovorans SPH-1 5751058 YP_001566455.1 CDS Daci_5441 NC_010002.1 6039718 6041211 D PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_0887 extracellular solute-binding protein, family 5; extracellular solute-binding protein 6039718..6041211 Delftia acidovorans SPH-1 5751059 YP_001566456.1 CDS Daci_5442 NC_010002.1 6041312 6042793 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 6041312..6042793 Delftia acidovorans SPH-1 5751060 YP_001566457.1 CDS Daci_5443 NC_010002.1 6042780 6043793 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4501 twin-arginine translocation pathway signal; hypothetical protein complement(6042780..6043793) Delftia acidovorans SPH-1 5751061 YP_001566458.1 CDS Daci_5444 NC_010002.1 6043936 6044961 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_B3547 helix-turn-helix, AraC type; AraC family transcriptional regulator complement(6043936..6044961) Delftia acidovorans SPH-1 5751062 YP_001566459.1 CDS Daci_5445 NC_010002.1 6045020 6045907 R KEGG: nmu:Nmul_A1494 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein complement(6045020..6045907) Delftia acidovorans SPH-1 5751063 YP_001566460.1 CDS Daci_5446 NC_010002.1 6045970 6046614 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(6045970..6046614) Delftia acidovorans SPH-1 5751064 YP_001566461.1 CDS Daci_5447 NC_010002.1 6046660 6047532 R KEGG: rfr:Rfer_1303 hypothetical protein; hypothetical protein complement(6046660..6047532) Delftia acidovorans SPH-1 5751065 YP_001566462.1 CDS Daci_5448 NC_010002.1 6047538 6048521 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: aav:Aave_3629 protein of unknown function DUF6, transmembrane; hypothetical protein complement(6047538..6048521) Delftia acidovorans SPH-1 5751066 YP_001566463.1 CDS Daci_5449 NC_010002.1 6048531 6049262 R PFAM: GTP cyclohydrolase I; KEGG: ajs:Ajs_0879 GTP cyclohydrolase I; GTP cyclohydrolase I complement(6048531..6049262) Delftia acidovorans SPH-1 5751067 YP_001566464.1 CDS Daci_5450 NC_010002.1 6049383 6050156 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_0877 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(6049383..6050156) Delftia acidovorans SPH-1 5751068 YP_001566465.1 CDS Daci_5451 NC_010002.1 6050184 6050669 R PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_0876 NUDIX hydrolase; NUDIX hydrolase complement(6050184..6050669) Delftia acidovorans SPH-1 5751069 YP_001566466.1 CDS Daci_5452 NC_010002.1 6050669 6051484 R KEGG: aav:Aave_3636 hypothetical protein; hypothetical protein complement(6050669..6051484) Delftia acidovorans SPH-1 5751070 YP_001566467.1 CDS aspS NC_010002.1 6051563 6053365 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(6051563..6053365) Delftia acidovorans SPH-1 5751071 YP_001566468.1 CDS Daci_5454 NC_010002.1 6053407 6054030 R PFAM: protein of unknown function DUF502; KEGG: aav:Aave_3638 protein of unknown function DUF502; hypothetical protein complement(6053407..6054030) Delftia acidovorans SPH-1 5751072 YP_001566469.1 CDS Daci_5455 NC_010002.1 6054049 6054366 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: aav:Aave_3639 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(6054049..6054366) Delftia acidovorans SPH-1 5751073 YP_001566470.1 CDS Daci_5456 NC_010002.1 6054591 6056609 R KEGG: aau:AAur_0264 hypothetical protein; hypothetical protein complement(6054591..6056609) Delftia acidovorans SPH-1 5751074 YP_001566471.1 CDS Daci_5457 NC_010002.1 6056787 6058235 R PFAM: Na+/solute symporter; KEGG: ajs:Ajs_0871 Na+/solute symporter; Na+/solute symporter complement(6056787..6058235) Delftia acidovorans SPH-1 5751075 YP_001566472.1 CDS ubiB NC_010002.1 6058294 6059859 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(6058294..6059859) Delftia acidovorans SPH-1 5751076 YP_001566473.1 CDS Daci_5459 NC_010002.1 6059856 6060494 R KEGG: aav:Aave_3642 hypothetical protein; hypothetical protein complement(6059856..6060494) Delftia acidovorans SPH-1 5751077 YP_001566474.1 CDS Daci_5460 NC_010002.1 6060616 6061632 R PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 complement(6060616..6061632) Delftia acidovorans SPH-1 5751078 YP_001566475.1 CDS Daci_5461 NC_010002.1 6061686 6062417 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_0867 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase complement(6061686..6062417) Delftia acidovorans SPH-1 5751079 YP_001566476.1 CDS Daci_5462 NC_010002.1 6062645 6063067 R PFAM: protein of unknown function DUF971; KEGG: aav:Aave_3645 protein of unknown function DUF971; hypothetical protein complement(6062645..6063067) Delftia acidovorans SPH-1 5751080 YP_001566477.1 CDS Daci_5463 NC_010002.1 6063078 6063533 R PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (HIT) protein complement(6063078..6063533) Delftia acidovorans SPH-1 5751081 YP_001566478.1 CDS Daci_5464 NC_010002.1 6063533 6067447 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: aav:Aave_3648 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(6063533..6067447) Delftia acidovorans SPH-1 5751082 YP_001566479.1 CDS Daci_5465 NC_010002.1 6067869 6069173 D PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3650 extracellular solute-binding protein, family 1; extracellular solute-binding protein 6067869..6069173 Delftia acidovorans SPH-1 5751083 YP_001566480.1 CDS Daci_5466 NC_010002.1 6069297 6070178 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0856 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 6069297..6070178 Delftia acidovorans SPH-1 5751084 YP_001566481.1 CDS Daci_5467 NC_010002.1 6070181 6071029 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3652 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 6070181..6071029 Delftia acidovorans SPH-1 5751085 YP_001566482.1 CDS Daci_5468 NC_010002.1 6071119 6072129 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_3653 ABC transporter-related protein; ABC transporter-like protein 6071119..6072129 Delftia acidovorans SPH-1 5751086 YP_001566483.1 CDS Daci_5469 NC_010002.1 6072220 6072984 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ajs:Ajs_0858 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase 6072220..6072984 Delftia acidovorans SPH-1 5751087 YP_001566484.1 CDS Daci_5470 NC_010002.1 6073057 6075564 D PFAM: MscS Mechanosensitive ion channel; KEGG: aav:Aave_3656 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 6073057..6075564 Delftia acidovorans SPH-1 5751088 YP_001566485.1 CDS Daci_5471 NC_010002.1 6075561 6076466 R PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(6075561..6076466) Delftia acidovorans SPH-1 5751089 YP_001566486.1 CDS Daci_5472 NC_010002.1 6076466 6077458 R PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0855 uncharacterized protein UPF0065; hypothetical protein complement(6076466..6077458) Delftia acidovorans SPH-1 5751090 YP_001566487.1 CDS Daci_5473 NC_010002.1 6077607 6078530 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0854 transcriptional regulator, LysR family; LysR family transcriptional regulator 6077607..6078530 Delftia acidovorans SPH-1 5751091 YP_001566488.1 CDS Daci_5474 NC_010002.1 6078586 6078861 R KEGG: rfr:Rfer_1282 hypothetical protein; hypothetical protein complement(6078586..6078861) Delftia acidovorans SPH-1 5751092 YP_001566489.1 CDS hemA NC_010002.1 6078934 6080259 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 6078934..6080259 Delftia acidovorans SPH-1 5751093 YP_001566490.1 CDS prfA NC_010002.1 6080433 6081515 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 6080433..6081515 Delftia acidovorans SPH-1 5751094 YP_001566491.1 CDS Daci_5477 NC_010002.1 6081526 6082395 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 12; KEGG: ajs:Ajs_0850 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 6081526..6082395 Delftia acidovorans SPH-1 5751095 YP_001566492.1 CDS Daci_5478 NC_010002.1 6082512 6082835 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ajs:Ajs_0849 glutaredoxin-like protein; glutaredoxin-like protein 6082512..6082835 Delftia acidovorans SPH-1 5751096 YP_001566493.1 CDS Daci_5479 NC_010002.1 6082948 6084396 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aav:Aave_3668 protein of unknown function DUF21; hypothetical protein 6082948..6084396 Delftia acidovorans SPH-1 5751097 YP_001566494.1 CDS Daci_5480 NC_010002.1 6084451 6085035 R PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(6084451..6085035) Delftia acidovorans SPH-1 5751098 YP_001566495.1 CDS Daci_5481 NC_010002.1 6085101 6086846 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(6085101..6086846) Delftia acidovorans SPH-1 5751099 YP_001566496.1 CDS Daci_5482 NC_010002.1 6086940 6087629 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 6086940..6087629 Delftia acidovorans SPH-1 5751100 YP_001566497.1 CDS Daci_5483 NC_010002.1 6087696 6088844 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(6087696..6088844) Delftia acidovorans SPH-1 5751101 YP_001566498.1 CDS Daci_5484 NC_010002.1 6088928 6090043 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: ajs:Ajs_0843 GTP1/OBG sub domain protein; GTP-binding protein Obg/CgtA complement(6088928..6090043) Delftia acidovorans SPH-1 5751102 YP_001566499.1 CDS rpmA NC_010002.1 6090193 6090450 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(6090193..6090450) Delftia acidovorans SPH-1 5751103 YP_001566500.1 CDS Daci_5486 NC_010002.1 6090466 6090777 R PFAM: ribosomal protein L21; KEGG: ajs:Ajs_0841 ribosomal protein L21; 50S ribosomal protein L21 complement(6090466..6090777) Delftia acidovorans SPH-1 5751104 YP_001566501.1 CDS Daci_5487 NC_010002.1 6090858 6091937 D PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; polyprenyl synthetase 6090858..6091937 Delftia acidovorans SPH-1 5751105 YP_001566502.1 CDS Daci_5488 NC_010002.1 6092178 6093920 D KEGG: aav:Aave_3680 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB 6092178..6093920 Delftia acidovorans SPH-1 5751107 YP_001566503.1 CDS Daci_5489 NC_010002.1 6093959 6095176 D PFAM: type II secretion system protein; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system protein 6093959..6095176 Delftia acidovorans SPH-1 5751108 YP_001566504.1 CDS Daci_5490 NC_010002.1 6095176 6096060 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: aav:Aave_3682 prepilin peptidase; prepilin peptidase 6095176..6096060 Delftia acidovorans SPH-1 5751109 YP_001566505.1 CDS Daci_5491 NC_010002.1 6096075 6096719 D KEGG: vei:Veis_3922 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 6096075..6096719 Delftia acidovorans SPH-1 5751110 YP_001566506.1 CDS Daci_5492 NC_010002.1 6096809 6097564 D PFAM: protein of unknown function DUF1342; KEGG: ajs:Ajs_0801 protein of unknown function DUF1342; hypothetical protein 6096809..6097564 Delftia acidovorans SPH-1 5751111 YP_001566507.1 CDS Daci_5493 NC_010002.1 6097555 6097818 D PFAM: protein of unknown function DUF329; KEGG: ajs:Ajs_0800 protein of unknown function DUF329; hypothetical protein 6097555..6097818 Delftia acidovorans SPH-1 5751112 YP_001566508.1 CDS Daci_5494 NC_010002.1 6097829 6098347 R PFAM: NUDIX hydrolase; KEGG: aav:Aave_3686 NUDIX hydrolase; NUDIX hydrolase complement(6097829..6098347) Delftia acidovorans SPH-1 5751113 YP_001566509.1 CDS Daci_5495 NC_010002.1 6098398 6099354 R PFAM: protein of unknown function DUF815; KEGG: ajs:Ajs_0798 protein of unknown function DUF815; hypothetical protein complement(6098398..6099354) Delftia acidovorans SPH-1 5751114 YP_001566510.1 CDS argJ NC_010002.1 6099520 6100752 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(6099520..6100752) Delftia acidovorans SPH-1 5751115 YP_001566511.1 CDS Daci_5497 NC_010002.1 6100903 6103650 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(6100903..6103650) Delftia acidovorans SPH-1 5751116 YP_001566512.1 CDS Daci_5498 NC_010002.1 6103929 6104267 D KEGG: aav:Aave_3691 hypothetical protein; hypothetical protein 6103929..6104267 Delftia acidovorans SPH-1 5751117 YP_001566513.1 CDS Daci_5499 NC_010002.1 6104511 6105041 R PFAM: Stringent starvation protein B; KEGG: aav:Aave_3692 stringent starvation protein B; stringent starvation protein B complement(6104511..6105041) Delftia acidovorans SPH-1 5751119 YP_001566514.1 CDS Daci_5500 NC_010002.1 6105145 6105756 R PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_3693 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(6105145..6105756) Delftia acidovorans SPH-1 5751120 YP_001566515.1 CDS Daci_5501 NC_010002.1 6105860 6106615 R PFAM: cytochrome c1; KEGG: aav:Aave_3694 cytochrome c1; cytochrome c1 complement(6105860..6106615) Delftia acidovorans SPH-1 5751121 YP_001566516.1 CDS Daci_5502 NC_010002.1 6106633 6108048 R PFAM: Cytochrome b/b6 domain; KEGG: aav:Aave_3695 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein complement(6106633..6108048) Delftia acidovorans SPH-1 5751122 YP_001566517.1 CDS Daci_5503 NC_010002.1 6108063 6108659 R KEGG: aav:Aave_3696 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(6108063..6108659) Delftia acidovorans SPH-1 5751123 YP_001566518.1 CDS mscL NC_010002.1 6108809 6109237 D homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 6108809..6109237 Delftia acidovorans SPH-1 5751124 YP_001566519.1 CDS Daci_5505 NC_010002.1 6109330 6110391 R KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(6109330..6110391) Delftia acidovorans SPH-1 5751125 YP_001566520.1 CDS Daci_5506 NC_010002.1 6110504 6111265 R PFAM: protein of unknown function DUF34; KEGG: ajs:Ajs_0786 protein of unknown function DUF34; hypothetical protein complement(6110504..6111265) Delftia acidovorans SPH-1 5751126 YP_001566521.1 CDS Daci_5507 NC_010002.1 6111340 6112665 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_1058 major facilitator superfamily MFS_1; major facilitator transporter complement(6111340..6112665) Delftia acidovorans SPH-1 5751127 YP_001566522.1 CDS Daci_5508 NC_010002.1 6113481 6113957 D hypothetical protein 6113481..6113957 Delftia acidovorans SPH-1 5751128 YP_001566523.1 CDS Daci_5509 NC_010002.1 6114433 6114894 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: xau:Xaut_3079 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(6114433..6114894) Delftia acidovorans SPH-1 5751129 YP_001566524.1 CDS Daci_5510 NC_010002.1 6114891 6119063 R TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: hch:HCH_02779 rhs family protein; YD repeat-containing protein complement(6114891..6119063) Delftia acidovorans SPH-1 5751130 YP_001566525.1 CDS Daci_5511 NC_010002.1 6119167 6123525 R KEGG: hch:HCH_02778 protein containing fibronectin type III domains; hypothetical protein complement(6119167..6123525) Delftia acidovorans SPH-1 5751131 YP_001566526.1 CDS Daci_5512 NC_010002.1 6123539 6127999 R KEGG: sus:Acid_6164 Ig family protein; hypothetical protein complement(6123539..6127999) Delftia acidovorans SPH-1 5751132 YP_001566527.1 CDS Daci_5513 NC_010002.1 6128046 6128996 R hypothetical protein complement(6128046..6128996) Delftia acidovorans SPH-1 5751133 YP_001566528.1 CDS Daci_5514 NC_010002.1 6128993 6133507 R KEGG: hch:HCH_02780 RTX toxins and related Ca2+-binding protein; hypothetical protein complement(6128993..6133507) Delftia acidovorans SPH-1 5751134 YP_001566529.1 CDS Daci_5515 NC_010002.1 6133824 6134975 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; 2-alkenal reductase 6133824..6134975 Delftia acidovorans SPH-1 5751135 YP_001566530.1 CDS Daci_5516 NC_010002.1 6135045 6135947 R PFAM: Aldose 1-epimerase; KEGG: aav:Aave_1046 aldose 1-epimerase; aldose 1-epimerase complement(6135045..6135947) Delftia acidovorans SPH-1 5751136 YP_001566531.1 CDS Daci_5517 NC_010002.1 6135988 6137223 D KEGG: aav:Aave_1035 hypothetical protein; hypothetical protein 6135988..6137223 Delftia acidovorans SPH-1 5751137 YP_001566532.1 CDS Daci_5518 NC_010002.1 6137309 6138049 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: ajs:Ajs_0765 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(6137309..6138049) Delftia acidovorans SPH-1 5751138 YP_001566533.1 CDS Daci_5519 NC_010002.1 6138111 6138773 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ajs:Ajs_0764 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(6138111..6138773) Delftia acidovorans SPH-1 5751139 YP_001566534.1 CDS Daci_5520 NC_010002.1 6138861 6139466 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: aav:Aave_1032 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(6138861..6139466) Delftia acidovorans SPH-1 5751140 YP_001566535.1 CDS Daci_5521 NC_010002.1 6139463 6140587 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(6139463..6140587) Delftia acidovorans SPH-1 5751141 YP_001566536.1 CDS Daci_5522 NC_010002.1 6140641 6141078 R KEGG: ajs:Ajs_0761 hypothetical protein; hypothetical protein complement(6140641..6141078) Delftia acidovorans SPH-1 5751142 YP_001566537.1 CDS Daci_5523 NC_010002.1 6141075 6141380 R KEGG: ajs:Ajs_0761 hypothetical protein; hypothetical protein complement(6141075..6141380) Delftia acidovorans SPH-1 5751143 YP_001566538.1 CDS hisD NC_010002.1 6141458 6142774 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(6141458..6142774) Delftia acidovorans SPH-1 5751144 YP_001566539.1 CDS Daci_5525 NC_010002.1 6142792 6143463 R KEGG: pau:PA14_28990 hypothetical protein; hypothetical protein complement(6142792..6143463) Delftia acidovorans SPH-1 5751145 YP_001566540.1 CDS Daci_5526 NC_010002.1 6143447 6144097 R KEGG: aav:Aave_1023 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase complement(6143447..6144097) Delftia acidovorans SPH-1 5751146 YP_001566541.1 CDS Daci_5527 NC_010002.1 6144094 6145362 R TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: aav:Aave_1022 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(6144094..6145362) Delftia acidovorans SPH-1 5751147 YP_001566542.1 CDS Daci_5528 NC_010002.1 6145459 6145707 R PFAM: BolA family protein; KEGG: aav:Aave_1021 BolA family protein; BolA family protein complement(6145459..6145707) Delftia acidovorans SPH-1 5751148 YP_001566543.1 CDS Daci_5529 NC_010002.1 6145835 6146590 R PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter; ABC-2 type transporter complement(6145835..6146590) Delftia acidovorans SPH-1 5751149 YP_001566544.1 CDS Daci_5530 NC_010002.1 6146587 6147516 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1019 ABC transporter-related protein; ABC transporter-like protein complement(6146587..6147516) Delftia acidovorans SPH-1 5751150 YP_001566545.1 CDS Daci_5531 NC_010002.1 6147590 6147871 R KEGG: vei:Veis_2402 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS complement(6147590..6147871) Delftia acidovorans SPH-1 5751151 YP_001566546.1 CDS Daci_5532 NC_010002.1 6147892 6148533 R PFAM: toluene tolerance family protein; KEGG: ajs:Ajs_0752 toluene tolerance family protein; toluene tolerance family protein complement(6147892..6148533) Delftia acidovorans SPH-1 5751152 YP_001566547.1 CDS Daci_5533 NC_010002.1 6148650 6149453 R PFAM: VacJ family lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein; VacJ family lipoprotein complement(6148650..6149453) Delftia acidovorans SPH-1 5751153 YP_001566548.1 CDS Daci_5534 NC_010002.1 6149450 6149935 R PFAM: Mammalian cell entry related domain protein; KEGG: ajs:Ajs_0750 mammalian cell entry related domain protein; hypothetical protein complement(6149450..6149935) Delftia acidovorans SPH-1 5751154 YP_001566549.1 CDS Daci_5535 NC_010002.1 6149980 6150762 R PFAM: protein of unknown function DUF140; KEGG: aav:Aave_1014 protein of unknown function DUF140; hypothetical protein complement(6149980..6150762) Delftia acidovorans SPH-1 5751155 YP_001566550.1 CDS Daci_5536 NC_010002.1 6150759 6151688 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0748 ABC transporter related; ABC transporter-like protein complement(6150759..6151688) Delftia acidovorans SPH-1 5751156 YP_001566551.1 CDS Daci_5537 NC_010002.1 6151816 6152583 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1012 ABC transporter-related protein; ABC transporter-like protein complement(6151816..6152583) Delftia acidovorans SPH-1 5751157 YP_001566552.1 CDS Daci_5538 NC_010002.1 6152731 6153384 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane protein complement(6152731..6153384) Delftia acidovorans SPH-1 5751158 YP_001566553.1 CDS Daci_5539 NC_010002.1 6153516 6154322 R PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_1010 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(6153516..6154322) Delftia acidovorans SPH-1 5751159 YP_001566554.1 CDS Daci_5540 NC_010002.1 6154531 6155904 R KEGG: aav:Aave_1037 putative transmembrane protein; putative transmembrane protein complement(6154531..6155904) Delftia acidovorans SPH-1 5751160 YP_001566555.1 CDS Daci_5541 NC_010002.1 6155904 6157460 R PFAM: glycosyl transferase group 1; KEGG: aav:Aave_1038 glycosyl transferase, group 1; glycosyl transferase group 1 protein complement(6155904..6157460) Delftia acidovorans SPH-1 5751161 YP_001566556.1 CDS Daci_5542 NC_010002.1 6157457 6158479 R KEGG: aav:Aave_1039 putative transmembrane protein; putative transmembrane protein complement(6157457..6158479) Delftia acidovorans SPH-1 5751162 YP_001566557.1 CDS Daci_5543 NC_010002.1 6158472 6159851 R KEGG: ajs:Ajs_0770 putative transmembrane protein; putative transmembrane protein complement(6158472..6159851) Delftia acidovorans SPH-1 5751163 YP_001566558.1 CDS Daci_5544 NC_010002.1 6159875 6160426 R KEGG: aav:Aave_1041 putative lipoprotein; putative lipoprotein complement(6159875..6160426) Delftia acidovorans SPH-1 5751164 YP_001566559.1 CDS Daci_5545 NC_010002.1 6160452 6164291 R KEGG: ajs:Ajs_0772 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(6160452..6164291) Delftia acidovorans SPH-1 5751165 YP_001566560.1 CDS Daci_5546 NC_010002.1 6164257 6167085 R KEGG: aav:Aave_1043 putative signal peptide protein; putative signal peptide protein complement(6164257..6167085) Delftia acidovorans SPH-1 5751166 YP_001566561.1 CDS Daci_5547 NC_010002.1 6167321 6168331 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aav:Aave_1044 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 6167321..6168331 Delftia acidovorans SPH-1 5751167 YP_001566562.1 CDS Daci_5548 NC_010002.1 6168408 6169208 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 6168408..6169208 Delftia acidovorans SPH-1 5751168 YP_001566563.1 CDS hisI NC_010002.1 6169453 6169851 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 6169453..6169851 Delftia acidovorans SPH-1 5751169 YP_001566564.1 CDS hisE NC_010002.1 6169848 6170261 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 6169848..6170261 Delftia acidovorans SPH-1 5751170 YP_001566565.1 CDS Daci_5551 NC_010002.1 6170258 6170650 D KEGG: ajs:Ajs_0778 putative transmembrane protein; putative transmembrane protein 6170258..6170650 Delftia acidovorans SPH-1 5751171 YP_001566566.1 CDS Daci_5552 NC_010002.1 6170670 6171701 D PFAM: Patatin; KEGG: ajs:Ajs_0779 patatin; patatin 6170670..6171701 Delftia acidovorans SPH-1 5751172 YP_001566567.1 CDS Daci_5553 NC_010002.1 6171743 6172105 D PFAM: histidine triad (HIT) protein; KEGG: vei:Veis_0702 histidine triad (HIT) protein; histidine triad (HIT) protein 6171743..6172105 Delftia acidovorans SPH-1 5751173 YP_001566568.1 CDS tatA NC_010002.1 6172300 6172539 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 6172300..6172539 Delftia acidovorans SPH-1 5751174 YP_001566569.1 CDS tatB NC_010002.1 6172561 6173058 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ajs:Ajs_0782 twin-arginine translocation protein, TatB subunit; sec-independent translocase 6172561..6173058 Delftia acidovorans SPH-1 5751175 YP_001566570.1 CDS Daci_5556 NC_010002.1 6173209 6174033 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: ajs:Ajs_0783 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 6173209..6174033 Delftia acidovorans SPH-1 5751176 YP_001566571.1 CDS gltD NC_010002.1 6174244 6175719 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(6174244..6175719) Delftia acidovorans SPH-1 5751177 YP_001566572.1 CDS Daci_5558 NC_010002.1 6175873 6180603 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin); glutamate synthase complement(6175873..6180603) Delftia acidovorans SPH-1 5751178 YP_001566573.1 CDS Daci_5559 NC_010002.1 6180792 6181502 R PFAM: protein of unknown function DUF1568; KEGG: pol:Bpro_0790 protein of unknown function DUF1568; hypothetical protein complement(6180792..6181502) Delftia acidovorans SPH-1 5751179 YP_001566574.1 CDS Daci_5560 NC_010002.1 6181558 6182442 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ajs:Ajs_3551 beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; IclR family transcriptional regulator complement(6181558..6182442) Delftia acidovorans SPH-1 5751180 YP_001566575.1 CDS Daci_5561 NC_010002.1 6182484 6183185 D KEGG: ajs:Ajs_3550 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 6182484..6183185 Delftia acidovorans SPH-1 5751181 YP_001566576.1 CDS Daci_5562 NC_010002.1 6183182 6183871 D KEGG: ajs:Ajs_3549 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 6183182..6183871 Delftia acidovorans SPH-1 5751182 YP_001566577.1 CDS Daci_5563 NC_010002.1 6183947 6185158 D KEGG: ajs:Ajs_3548 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 6183947..6185158 Delftia acidovorans SPH-1 5751183 YP_001566578.1 CDS Daci_5564 NC_010002.1 6185166 6185906 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_0868 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 6185166..6185906 Delftia acidovorans SPH-1 5751184 YP_001566579.1 CDS Daci_5565 NC_010002.1 6186082 6187089 D PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 uncharacterized protein UPF0065; hypothetical protein 6186082..6187089 Delftia acidovorans SPH-1 5751185 YP_001566580.1 CDS Daci_5566 NC_010002.1 6187278 6188081 R KEGG: rso:RSc0099 putative signal peptide protein; putative signal peptide protein complement(6187278..6188081) Delftia acidovorans SPH-1 5751186 YP_001566581.1 CDS Daci_5567 NC_010002.1 6188177 6189733 R PFAM: Alkaline phosphatase; KEGG: rso:RSc0098 putative alkaline phosphatase signal peptide protein; alkaline phosphatase complement(6188177..6189733) Delftia acidovorans SPH-1 5751187 YP_001566582.1 CDS Daci_5568 NC_010002.1 6189733 6191145 R PFAM: Alkaline phosphatase; KEGG: rso:RSc0097 putative alkaline phosphatase lipoprotein transmembrane; alkaline phosphatase complement(6189733..6191145) Delftia acidovorans SPH-1 5751188 YP_001566583.1 CDS Daci_5569 NC_010002.1 6191338 6192429 D PFAM: beta-lactamase domain protein; KEGG: vei:Veis_2417 beta-lactamase domain protein; beta-lactamase domain-containing protein 6191338..6192429 Delftia acidovorans SPH-1 5751189 YP_001566584.1 CDS Daci_5570 NC_010002.1 6192498 6193475 R hypothetical protein complement(6192498..6193475) Delftia acidovorans SPH-1 5751190 YP_001566585.1 CDS Daci_5571 NC_010002.1 6194257 6195129 R KEGG: aav:Aave_1006 hypothetical protein; hypothetical protein complement(6194257..6195129) Delftia acidovorans SPH-1 5751191 YP_001566586.1 CDS Daci_5572 NC_010002.1 6195126 6195746 R PFAM: protein of unknown function DUF1415; KEGG: aav:Aave_1005 protein of unknown function DUF1415; hypothetical protein complement(6195126..6195746) Delftia acidovorans SPH-1 5751192 YP_001566587.1 CDS Daci_5573 NC_010002.1 6195885 6197063 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(6195885..6197063) Delftia acidovorans SPH-1 5751193 YP_001566588.1 CDS aroB NC_010002.1 6197128 6198246 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(6197128..6198246) Delftia acidovorans SPH-1 5751194 YP_001566589.1 CDS Daci_5575 NC_010002.1 6198376 6198921 R PFAM: shikimate kinase; KEGG: pna:Pnap_0678 shikimate kinase; shikimate kinase complement(6198376..6198921) Delftia acidovorans SPH-1 5751195 YP_001566590.1 CDS Daci_5576 NC_010002.1 6198930 6200537 R KEGG: aav:Aave_1001 Ig domain protein, group 1 domain protein; hypothetical protein complement(6198930..6200537) Delftia acidovorans SPH-1 5751196 YP_001566591.1 CDS Daci_5577 NC_010002.1 6200561 6202711 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: aav:Aave_1000 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(6200561..6202711) Delftia acidovorans SPH-1 5751197 YP_001566592.1 CDS Daci_5578 NC_010002.1 6202708 6203256 R PFAM: Pilus assembly protein PilP; KEGG: aav:Aave_0999 pilus assembly protein, PilQ; pilus assembly protein PilP complement(6202708..6203256) Delftia acidovorans SPH-1 5751198 YP_001566593.1 CDS Daci_5579 NC_010002.1 6203256 6203933 R PFAM: Pilus assembly protein PilO; KEGG: aav:Aave_0998 pilus assembly protein, PilO; pilus assembly protein PilO complement(6203256..6203933) Delftia acidovorans SPH-1 5751199 YP_001566594.1 CDS Daci_5580 NC_010002.1 6203933 6204544 R PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein; fimbrial assembly family protein complement(6203933..6204544) Delftia acidovorans SPH-1 5751200 YP_001566595.1 CDS Daci_5581 NC_010002.1 6204541 6205620 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: aav:Aave_0996 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(6204541..6205620) Delftia acidovorans SPH-1 5751201 YP_001566596.1 CDS Daci_5582 NC_010002.1 6205842 6208316 D KEGG: aav:Aave_0995 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 6205842..6208316 Delftia acidovorans SPH-1 5751202 YP_001566597.1 CDS Daci_5583 NC_010002.1 6208396 6208734 R TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: aav:Aave_0994 frataxin family protein; iron donor protein CyaY complement(6208396..6208734) Delftia acidovorans SPH-1 5751203 YP_001566598.1 CDS Daci_5584 NC_010002.1 6209120 6209947 D PFAM: beta-lactamase domain protein; KEGG: aav:Aave_0991 beta-lactamase domain protein; beta-lactamase domain-containing protein 6209120..6209947 Delftia acidovorans SPH-1 5751204 YP_001566599.1 CDS Daci_5585 NC_010002.1 6209944 6210576 R PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein complement(6209944..6210576) Delftia acidovorans SPH-1 5751205 YP_001566600.1 CDS Daci_5586 NC_010002.1 6210578 6211558 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(6210578..6211558) Delftia acidovorans SPH-1 5751206 YP_001566601.1 CDS Daci_5587 NC_010002.1 6211741 6213081 R TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: aav:Aave_0986 cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB complement(6211741..6213081) Delftia acidovorans SPH-1 5751207 YP_001566602.1 CDS Daci_5588 NC_010002.1 6213078 6215261 R PFAM: ResB family protein; KEGG: aav:Aave_0985 ResB family protein; ResB family protein complement(6213078..6215261) Delftia acidovorans SPH-1 5751208 YP_001566603.1 CDS Daci_5589 NC_010002.1 6215401 6216168 R PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I; class I cytochrome c complement(6215401..6216168) Delftia acidovorans SPH-1 5751209 YP_001566604.1 CDS Daci_5590 NC_010002.1 6216328 6217260 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vei:Veis_3165 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(6216328..6217260) Delftia acidovorans SPH-1 5751210 YP_001566605.1 CDS Daci_5591 NC_010002.1 6217315 6218259 R PFAM: PfkB domain protein; KEGG: sil:SPOA0276 fructokinase; ribokinase-like domain-containing protein complement(6217315..6218259) Delftia acidovorans SPH-1 5751211 YP_001566606.1 CDS Daci_5592 NC_010002.1 6218265 6219689 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3167 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase domain-containing protein complement(6218265..6219689) Delftia acidovorans SPH-1 5751212 YP_001566607.1 CDS Daci_5593 NC_010002.1 6219754 6220812 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_3168 ABC transporter related; ABC transporter-like protein complement(6219754..6220812) Delftia acidovorans SPH-1 5751213 YP_001566608.1 CDS Daci_5594 NC_010002.1 6220858 6221676 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3169 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(6220858..6221676) Delftia acidovorans SPH-1 5751214 YP_001566609.1 CDS Daci_5595 NC_010002.1 6221684 6222577 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3170 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(6221684..6222577) Delftia acidovorans SPH-1 5751215 YP_001566610.1 CDS Daci_5596 NC_010002.1 6222574 6223884 R PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_3171 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(6222574..6223884) Delftia acidovorans SPH-1 5751216 YP_001566611.1 CDS Daci_5597 NC_010002.1 6224125 6225027 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: vei:Veis_2571 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 6224125..6225027 Delftia acidovorans SPH-1 5751217 YP_001566612.1 CDS pgi NC_010002.1 6225063 6226625 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(6225063..6226625) Delftia acidovorans SPH-1 5751218 YP_001566613.1 CDS Daci_5599 NC_010002.1 6226765 6228219 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 6226765..6228219 Delftia acidovorans SPH-1 5751219 YP_001566614.1 CDS engB NC_010002.1 6228406 6229185 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 6228406..6229185 Delftia acidovorans SPH-1 5751220 YP_001566615.1 CDS Daci_5601 NC_010002.1 6229231 6230142 D PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_0708 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 6229231..6230142 Delftia acidovorans SPH-1 5751221 YP_001566616.1 CDS Daci_5602 NC_010002.1 6230136 6231002 R PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(6230136..6231002) Delftia acidovorans SPH-1 5751222 YP_001566617.1 CDS Daci_5603 NC_010002.1 6230999 6231850 R PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(6230999..6231850) Delftia acidovorans SPH-1 5751223 YP_001566618.1 CDS Daci_5604 NC_010002.1 6231987 6233168 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 6231987..6233168 Delftia acidovorans SPH-1 5751224 YP_001566619.1 CDS Daci_5605 NC_010002.1 6233196 6234170 D KEGG: ajs:Ajs_0702 hypothetical protein; hypothetical protein 6233196..6234170 Delftia acidovorans SPH-1 5751225 YP_001566620.1 CDS Daci_5606 NC_010002.1 6234227 6235426 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 6234227..6235426 Delftia acidovorans SPH-1 5751226 YP_001566621.1 CDS Daci_5607 NC_010002.1 6235476 6237176 D KEGG: aav:Aave_0975 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase 6235476..6237176 Delftia acidovorans SPH-1 5751227 YP_001566622.1 CDS Daci_5608 NC_010002.1 6237205 6238341 D TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: ajs:Ajs_0701 cytidyltransferase-related domain; cytidyltransferase-like protein 6237205..6238341 Delftia acidovorans SPH-1 5751228 YP_001566623.1 CDS Daci_5609 NC_010002.1 6238414 6238905 D PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_4148 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 6238414..6238905 Delftia acidovorans SPH-1 5751229 YP_001566624.1 CDS Daci_5610 NC_010002.1 6238926 6239990 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3039 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6238926..6239990) Delftia acidovorans SPH-1 5751230 YP_001566625.1 CDS Daci_5611 NC_010002.1 6239953 6240441 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_3043 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(6239953..6240441) Delftia acidovorans SPH-1 5751231 YP_001566626.1 CDS Daci_5612 NC_010002.1 6240553 6241224 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1477 ABC-type transporter, permease component: MUT family; binding-protein-dependent transport system inner membrane protein complement(6240553..6241224) Delftia acidovorans SPH-1 5751232 YP_001566627.1 CDS Daci_5613 NC_010002.1 6241196 6242362 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_2365 ABC transporter related; ABC transporter-like protein complement(6241196..6242362) Delftia acidovorans SPH-1 5751233 YP_001566628.1 CDS Daci_5614 NC_010002.1 6242376 6243188 R PFAM: NLPA lipoprotein; KEGG: reh:H16_B1479 ABC-type transporter, periplasmic component: MUT family; NLPA lipoprotein complement(6242376..6243188) Delftia acidovorans SPH-1 5751234 YP_001566629.1 CDS Daci_5615 NC_010002.1 6243236 6244339 R PFAM: 2OG-Fe(II) oxygenase; KEGG: asa:ASA_2346 2OG-Fe(II) oxygenase superfamily protein; 2OG-Fe(II) oxygenase complement(6243236..6244339) Delftia acidovorans SPH-1 5751235 YP_001566630.1 CDS Daci_5616 NC_010002.1 6244375 6245802 R KEGG: pap:PSPA7_5762 homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(6244375..6245802) Delftia acidovorans SPH-1 5751236 YP_001566631.1 CDS Daci_5617 NC_010002.1 6246021 6247127 D KEGG: rme:Rmet_2219 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 6246021..6247127 Delftia acidovorans SPH-1 5751237 YP_001566632.1 CDS Daci_5618 NC_010002.1 6247124 6248179 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1867 ABC-type sulfonate transporter, permease component; binding-protein-dependent transport system inner membrane protein 6247124..6248179 Delftia acidovorans SPH-1 5751238 YP_001566633.1 CDS Daci_5619 NC_010002.1 6248173 6249009 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2221 ABC transporter-related protein; ABC transporter-like protein 6248173..6249009 Delftia acidovorans SPH-1 5751239 YP_001566634.1 CDS Daci_5620 NC_010002.1 6249022 6250218 D KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants; cytochrome c, mono-and diheme variant-like protein 6249022..6250218 Delftia acidovorans SPH-1 5751240 YP_001566635.1 CDS Daci_5621 NC_010002.1 6250437 6250910 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rle:RL2499 putative isoquinoline 1-oxidoreductase alpha subunit; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 6250437..6250910 Delftia acidovorans SPH-1 5751241 YP_001566636.1 CDS Daci_5622 NC_010002.1 6250925 6253192 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pol:Bpro_3556 twin-arginine translocation pathway signal; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 6250925..6253192 Delftia acidovorans SPH-1 5751242 YP_001566637.1 CDS Daci_5623 NC_010002.1 6253241 6254212 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05493 probable transcription regulator protein; LysR family transcriptional regulator complement(6253241..6254212) Delftia acidovorans SPH-1 5751243 YP_001566638.1 CDS Daci_5624 NC_010002.1 6254297 6255187 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: azo:azo0573 hypothetical protein; hypothetical protein complement(6254297..6255187) Delftia acidovorans SPH-1 5751244 YP_001566639.1 CDS Daci_5625 NC_010002.1 6255184 6256191 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_3605 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6255184..6256191) Delftia acidovorans SPH-1 5751245 YP_001566640.1 CDS Daci_5626 NC_010002.1 6256188 6257168 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pau:PA14_29460 putative quinone oxidoreductase; alcohol dehydrogenase complement(6256188..6257168) Delftia acidovorans SPH-1 5751246 YP_001566641.1 CDS Daci_5627 NC_010002.1 6257300 6258418 R KEGG: vei:Veis_4644 porin, gram-negative type; porin complement(6257300..6258418) Delftia acidovorans SPH-1 5751247 YP_001566642.1 CDS Daci_5628 NC_010002.1 6258517 6259515 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B1445 probable extra-cytoplasmic solute receptor; hypothetical protein complement(6258517..6259515) Delftia acidovorans SPH-1 5751248 YP_001566643.1 CDS Daci_5629 NC_010002.1 6259562 6260647 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein P47K complement(6259562..6260647) Delftia acidovorans SPH-1 5751249 YP_001566644.1 CDS Daci_5630 NC_010002.1 6260644 6261009 R hypothetical protein complement(6260644..6261009) Delftia acidovorans SPH-1 5751250 YP_001566645.1 CDS Daci_5631 NC_010002.1 6261018 6262814 R PFAM: Hydantoinase B/oxoprolinase; KEGG: mta:Moth_1966 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(6261018..6262814) Delftia acidovorans SPH-1 5751251 YP_001566646.1 CDS Daci_5632 NC_010002.1 6262811 6264907 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mta:Moth_1967 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(6262811..6264907) Delftia acidovorans SPH-1 5751252 YP_001566647.1 CDS Daci_5633 NC_010002.1 6264922 6265782 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbt:BBta_5587 putative enzyme with isomerase/decarboxylase activity; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase complement(6264922..6265782) Delftia acidovorans SPH-1 5751253 YP_001566648.1 CDS Daci_5634 NC_010002.1 6265938 6266915 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bch:Bcen2424_3226 transcriptional regulator, LysR family; LysR family transcriptional regulator 6265938..6266915 Delftia acidovorans SPH-1 5751254 YP_001566649.1 CDS Daci_5635 NC_010002.1 6266909 6267880 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rsh:Rsph17029_3087 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(6266909..6267880) Delftia acidovorans SPH-1 5751255 YP_001566650.1 CDS Daci_5636 NC_010002.1 6267877 6268290 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_pAT_700 probable ring-cleaving dioxygenase PA0817; glyoxalase/bleomycin resistance protein/dioxygenase complement(6267877..6268290) Delftia acidovorans SPH-1 5751256 YP_001566651.1 CDS Daci_5637 NC_010002.1 6268422 6269276 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_06369 hypothetical protein; LysR family transcriptional regulator 6268422..6269276 Delftia acidovorans SPH-1 5751257 YP_001566652.1 CDS Daci_5638 NC_010002.1 6269425 6270333 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3530 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6269425..6270333) Delftia acidovorans SPH-1 5751258 YP_001566653.1 CDS Daci_5639 NC_010002.1 6270459 6271211 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3531 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 6270459..6271211 Delftia acidovorans SPH-1 5751259 YP_001566654.1 CDS Daci_5640 NC_010002.1 6271386 6272063 D PFAM: Glutathione S-transferase domain; KEGG: rso:RSc2594 probable glutathione-S-transferase protein; glutathione S-transferase domain-containing protein 6271386..6272063 Delftia acidovorans SPH-1 5751260 YP_001566655.1 CDS Daci_5641 NC_010002.1 6272143 6273027 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_2927 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6272143..6273027) Delftia acidovorans SPH-1 5751261 YP_001566656.1 CDS Daci_5642 NC_010002.1 6273161 6274435 D PFAM: ribulose bisphosphate carboxylase large chain; KEGG: ppf:Pput_1846 ribulose-bisphosphate carboxylase; RuBisCO-like protein 6273161..6274435 Delftia acidovorans SPH-1 5751262 YP_001566657.1 CDS Daci_5643 NC_010002.1 6274444 6275853 D KEGG: ppf:Pput_1847 type III effector Hrp-dependent outer; Hrp-dependent type III effector protein 6274444..6275853 Delftia acidovorans SPH-1 5751263 YP_001566658.1 CDS Daci_5644 NC_010002.1 6275872 6276891 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2782 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein; TRAP dicarboxylate transporter subunit DctP 6275872..6276891 Delftia acidovorans SPH-1 5751264 YP_001566659.1 CDS Daci_5645 NC_010002.1 6276897 6278768 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpe:RPE_2875 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 6276897..6278768 Delftia acidovorans SPH-1 5751265 YP_001566660.1 CDS Daci_5646 NC_010002.1 6278798 6279568 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppf:Pput_1844 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 6278798..6279568 Delftia acidovorans SPH-1 5751266 YP_001566661.1 CDS Daci_5648 NC_010002.1 6279977 6281395 D PFAM: protein of unknown function UPF0027; KEGG: bur:Bcep18194_B0923 hypothetical protein; hypothetical protein 6279977..6281395 Delftia acidovorans SPH-1 5751268 YP_001566662.1 CDS Daci_5649 NC_010002.1 6281411 6283372 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_4569 sigma54 specific transcriptional regulator with GAF sensor, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator complement(6281411..6283372) Delftia acidovorans SPH-1 5751269 YP_001566663.1 CDS Daci_5650 NC_010002.1 6283695 6285218 D PFAM: Aldehyde Dehydrogenase_; KEGG: mpt:Mpe_A0599 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 6283695..6285218 Delftia acidovorans SPH-1 5751270 YP_001566664.1 CDS Daci_5651 NC_010002.1 6285286 6285660 D PFAM: protein of unknown function DUF779; KEGG: mpt:Mpe_A0598 hypothetical protein; hypothetical protein 6285286..6285660 Delftia acidovorans SPH-1 5751271 YP_001566665.1 CDS Daci_5652 NC_010002.1 6285679 6286266 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: nar:Saro_2315 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(6285679..6286266) Delftia acidovorans SPH-1 5751272 YP_001566666.1 CDS Daci_5653 NC_010002.1 6286343 6289411 R PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3446 acriflavin resistance protein; acriflavin resistance protein complement(6286343..6289411) Delftia acidovorans SPH-1 5751273 YP_001566667.1 CDS Daci_5654 NC_010002.1 6289404 6290591 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSc3206 probable transport lipoprotein; RND family efflux transporter MFP subunit complement(6289404..6290591) Delftia acidovorans SPH-1 5751274 YP_001566668.1 CDS Daci_5655 NC_010002.1 6290668 6291285 R PFAM: regulatory protein TetR; KEGG: pol:Bpro_3444 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(6290668..6291285) Delftia acidovorans SPH-1 5751275 YP_001566669.1 CDS Daci_5656 NC_010002.1 6291375 6292880 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3443 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 6291375..6292880 Delftia acidovorans SPH-1 5751276 YP_001566670.1 CDS Daci_5657 NC_010002.1 6293020 6293346 D KEGG: net:Neut_0047 hypothetical protein; hypothetical protein 6293020..6293346 Delftia acidovorans SPH-1 5751277 YP_001566671.1 CDS Daci_5658 NC_010002.1 6293418 6293885 R PFAM: protein of unknown function DUF1348; KEGG: bam:Bamb_5951 protein of unknown function DUF1348; hypothetical protein complement(6293418..6293885) Delftia acidovorans SPH-1 5751278 YP_001566672.1 CDS Daci_5659 NC_010002.1 6293971 6294555 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_2654 transcriptional regulator, TetR family; TetR family transcriptional regulator 6293971..6294555 Delftia acidovorans SPH-1 5751279 YP_001566673.1 CDS groES NC_010002.1 6294741 6295031 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 6294741..6295031 Delftia acidovorans SPH-1 5751280 YP_001566674.1 CDS groEL NC_010002.1 6295078 6296721 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 6295078..6296721 Delftia acidovorans SPH-1 5751281 YP_001566675.1 CDS Daci_5662 NC_010002.1 6296831 6298108 R PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_B2576 putative aminotransferase; GntR family transcriptional regulator complement(6296831..6298108) Delftia acidovorans SPH-1 5751282 YP_001566676.1 CDS Daci_5663 NC_010002.1 6298220 6299635 R PFAM: protein of unknown function DUF1338; KEGG: rle:RL4587 hypothetical protein; hypothetical protein complement(6298220..6299635) Delftia acidovorans SPH-1 5751283 YP_001566677.1 CDS Daci_5664 NC_010002.1 6299802 6300722 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH04052 probable transcriptional regulator protein, LysR family; LysR family transcriptional regulator 6299802..6300722 Delftia acidovorans SPH-1 5751284 YP_001566678.1 CDS Daci_5665 NC_010002.1 6300697 6301659 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: vei:Veis_4296 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(6300697..6301659) Delftia acidovorans SPH-1 5751285 YP_001566679.1 CDS Daci_5666 NC_010002.1 6301661 6303325 R PFAM: Amidohydrolase 3; KEGG: vei:Veis_4295 amidohydrolase 3; amidohydrolase 3 complement(6301661..6303325) Delftia acidovorans SPH-1 5751286 YP_001566680.1 CDS Daci_5667 NC_010002.1 6303345 6304367 R KEGG: vei:Veis_4294 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(6303345..6304367) Delftia acidovorans SPH-1 5751287 YP_001566681.1 CDS Daci_5668 NC_010002.1 6304364 6305392 R KEGG: vei:Veis_4293 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(6304364..6305392) Delftia acidovorans SPH-1 5751288 YP_001566682.1 CDS Daci_5669 NC_010002.1 6305392 6306300 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4292 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(6305392..6306300) Delftia acidovorans SPH-1 5751289 YP_001566683.1 CDS Daci_5670 NC_010002.1 6306305 6307282 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4291 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(6306305..6307282) Delftia acidovorans SPH-1 5751290 YP_001566684.1 CDS Daci_5671 NC_010002.1 6307299 6308894 R PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_4290 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(6307299..6308894) Delftia acidovorans SPH-1 5751291 YP_001566685.1 CDS Daci_5672 NC_010002.1 6309137 6310663 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: vei:Veis_4287 putative transcriptional regulator, GntR family; transcriptional regulator 6309137..6310663 Delftia acidovorans SPH-1 5751292 YP_001566686.1 CDS Daci_5673 NC_010002.1 6310648 6311547 R PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_0788 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(6310648..6311547) Delftia acidovorans SPH-1 5751293 YP_001566687.1 CDS pgi NC_010002.1 6311779 6313401 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(6311779..6313401) Delftia acidovorans SPH-1 5751294 YP_001566688.1 CDS Daci_5675 NC_010002.1 6313406 6314359 R KEGG: ajs:Ajs_0696 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(6313406..6314359) Delftia acidovorans SPH-1 5751295 YP_001566689.1 CDS Daci_5676 NC_010002.1 6314442 6315413 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 6314442..6315413 Delftia acidovorans SPH-1 5751296 YP_001566690.1 CDS Daci_5677 NC_010002.1 6315441 6316928 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pfl:PFL_3434 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(6315441..6316928) Delftia acidovorans SPH-1 5751297 YP_001566691.1 CDS Daci_5678 NC_010002.1 6316973 6317575 D PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2441 transcriptional regulator, TetR family; TetR family transcriptional regulator 6316973..6317575 Delftia acidovorans SPH-1 5751298 YP_001566692.1 CDS Daci_5679 NC_010002.1 6317591 6318817 R KEGG: ajs:Ajs_0687 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(6317591..6318817) Delftia acidovorans SPH-1 5751299 YP_001566693.1 CDS Daci_5680 NC_010002.1 6318952 6319530 R KEGG: aav:Aave_0933 porin, gram-negative type; porin complement(6318952..6319530) Delftia acidovorans SPH-1 5751300 YP_001566694.1 CDS Daci_5681 NC_010002.1 6319561 6320100 R KEGG: aav:Aave_0933 porin, gram-negative type; porin complement(6319561..6320100) Delftia acidovorans SPH-1 5751301 YP_001566695.1 CDS Daci_5682 NC_010002.1 6320283 6321338 R KEGG: ajs:Ajs_0682 porin, gram-negative type; porin complement(6320283..6321338) Delftia acidovorans SPH-1 5751302 YP_001566696.1 CDS Daci_5683 NC_010002.1 6321669 6322286 D KEGG: ajs:Ajs_0681 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein 6321669..6322286 Delftia acidovorans SPH-1 5751303 YP_001566697.1 CDS Daci_5684 NC_010002.1 6322395 6322847 R PFAM: OsmC family protein; KEGG: aav:Aave_0930 OsmC family protein; OsmC family protein complement(6322395..6322847) Delftia acidovorans SPH-1 5751304 YP_001566698.1 CDS Daci_5685 NC_010002.1 6323215 6324768 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 6323215..6324768 Delftia acidovorans SPH-1 5751305 YP_001566699.1 CDS Daci_5686 NC_010002.1 6324799 6325611 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: ajs:Ajs_0678 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS 6324799..6325611 Delftia acidovorans SPH-1 5751306 YP_001566700.1 CDS Daci_5687 NC_010002.1 6325608 6326210 D PFAM: Phosphoglycerate mutase; KEGG: aav:Aave_0927 phosphoglycerate mutase; phosphoglycerate mutase 6325608..6326210 Delftia acidovorans SPH-1 5751307 YP_001566701.1 CDS Daci_5688 NC_010002.1 6326217 6326690 R KEGG: aav:Aave_0926 hypothetical protein; hypothetical protein complement(6326217..6326690) Delftia acidovorans SPH-1 5751308 YP_001566702.1 CDS Daci_5689 NC_010002.1 6326713 6327189 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_0925 general secretion pathway protein G; general secretion pathway protein G 6326713..6327189 Delftia acidovorans SPH-1 5751309 YP_001566703.1 CDS Daci_5690 NC_010002.1 6327164 6327727 D TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_3522 general secretion pathway protein H; general secretion pathway protein H 6327164..6327727 Delftia acidovorans SPH-1 5751310 YP_001566704.1 CDS Daci_5691 NC_010002.1 6327799 6328122 D PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I; type II secretion system protein I/J 6327799..6328122 Delftia acidovorans SPH-1 5751311 YP_001566705.1 CDS Daci_5692 NC_010002.1 6328129 6328830 D KEGG: vei:Veis_3524 hypothetical protein; hypothetical protein 6328129..6328830 Delftia acidovorans SPH-1 5751312 YP_001566706.1 CDS Daci_5693 NC_010002.1 6328827 6329804 D PFAM: General secretion pathway protein K; KEGG: ajs:Ajs_0671 general secretion pathway protein K; general secretion pathway protein K 6328827..6329804 Delftia acidovorans SPH-1 5751313 YP_001566707.1 CDS Daci_5694 NC_010002.1 6329801 6331093 D PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein; general secretion pathway L 6329801..6331093 Delftia acidovorans SPH-1 5751314 YP_001566708.1 CDS Daci_5695 NC_010002.1 6331090 6331650 D KEGG: ajs:Ajs_0669 hypothetical protein; hypothetical protein 6331090..6331650 Delftia acidovorans SPH-1 5751315 YP_001566709.1 CDS Daci_5696 NC_010002.1 6331653 6332456 D KEGG: vei:Veis_3528 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein 6331653..6332456 Delftia acidovorans SPH-1 5751316 YP_001566710.1 CDS Daci_5697 NC_010002.1 6332460 6334823 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_0917 general secretion pathway protein D; general secretion pathway protein D 6332460..6334823 Delftia acidovorans SPH-1 5751317 YP_001566711.1 CDS Daci_5698 NC_010002.1 6334838 6336199 D KEGG: aav:Aave_0916 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 6334838..6336199 Delftia acidovorans SPH-1 5751318 YP_001566712.1 CDS Daci_5699 NC_010002.1 6336254 6336547 D hypothetical protein 6336254..6336547 Delftia acidovorans SPH-1 5751319 YP_001566713.1 CDS Daci_5700 NC_010002.1 6336633 6337634 D PFAM: luciferase family protein; KEGG: ajs:Ajs_0664 luciferase family protein; luciferase family protein 6336633..6337634 Delftia acidovorans SPH-1 5751320 YP_001566714.1 CDS Daci_5701 NC_010002.1 6337639 6338328 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: aav:Aave_2089 helix-turn-helix, type 11 domain protein; helix-turn-helix type 11 domain-containing protein 6337639..6338328 Delftia acidovorans SPH-1 5751321 YP_001566715.1 CDS Daci_5702 NC_010002.1 6338417 6339061 D PFAM: Glutathione S-transferase domain; KEGG: xac:XAC1299 glutathione S-transferase; glutathione S-transferase domain-containing protein 6338417..6339061 Delftia acidovorans SPH-1 5751322 YP_001566716.1 CDS Daci_5703 NC_010002.1 6339206 6340432 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ajs:Ajs_0663 general secretion pathway protein F; general secretion pathway protein F 6339206..6340432 Delftia acidovorans SPH-1 5751323 YP_001566717.1 CDS Daci_5704 NC_010002.1 6340449 6341369 D PFAM: 5-nucleotidase; KEGG: ajs:Ajs_0662 5-nucleotidase; 5'-nucleotidase 6340449..6341369 Delftia acidovorans SPH-1 5751324 YP_001566718.1 CDS Daci_5705 NC_010002.1 6341447 6341911 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: aav:Aave_3976 putative signal transduction protein with EFhand domain; calcium-binding EF-hand-containing protein 6341447..6341911 Delftia acidovorans SPH-1 5751325 YP_001566719.1 CDS Daci_5706 NC_010002.1 6341936 6342370 R KEGG: ajs:Ajs_0660 hypothetical protein; hypothetical protein complement(6341936..6342370) Delftia acidovorans SPH-1 5751326 YP_001566720.1 CDS Daci_5707 NC_010002.1 6342526 6343029 R PFAM: Domain of unknown function DUF1854; KEGG: aav:Aave_3978 hypothetical protein; hypothetical protein complement(6342526..6343029) Delftia acidovorans SPH-1 5751327 YP_001566721.1 CDS Daci_5708 NC_010002.1 6343033 6345327 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3979 ABC transporter-related protein; ABC transporter-like protein complement(6343033..6345327) Delftia acidovorans SPH-1 5751328 YP_001566722.1 CDS Daci_5709 NC_010002.1 6345546 6347738 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 6345546..6347738 Delftia acidovorans SPH-1 5751329 YP_001566723.1 CDS Daci_5710 NC_010002.1 6347757 6350384 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 6347757..6350384 Delftia acidovorans SPH-1 5751330 YP_001566724.1 CDS Daci_5711 NC_010002.1 6350501 6351010 D PFAM: CreA family protein; KEGG: pna:Pnap_2219 CreA family protein; CreA family protein 6350501..6351010 Delftia acidovorans SPH-1 5751331 YP_001566725.1 CDS Daci_5712 NC_010002.1 6351017 6351922 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2818 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6351017..6351922) Delftia acidovorans SPH-1 5751332 YP_001566726.1 CDS Daci_5713 NC_010002.1 6352055 6353140 D PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2819 conserved hypothetical protein 698; hypothetical protein 6352055..6353140 Delftia acidovorans SPH-1 5751333 YP_001566727.1 CDS Daci_5714 NC_010002.1 6353296 6353757 D PFAM: regulatory protein MarR; KEGG: xau:Xaut_1307 transcriptional regulator, MarR family; MarR family transcriptional regulator 6353296..6353757 Delftia acidovorans SPH-1 5751334 YP_001566728.1 CDS Daci_5715 NC_010002.1 6353754 6355739 D KEGG: xau:Xaut_1306 fusaric acid resistance protein conserved region; fusaric acid resistance protein region 6353754..6355739 Delftia acidovorans SPH-1 5751335 YP_001566729.1 CDS Daci_5716 NC_010002.1 6355821 6356354 D KEGG: reh:H16_B2397 acetyltransferase; acetyltransferase 6355821..6356354 Delftia acidovorans SPH-1 5751336 YP_001566730.1 CDS Daci_5717 NC_010002.1 6356412 6357854 R PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_3830 succinate-semialdehyde dehydrogenase (NAD(P)(+)); aldehyde dehydrogenase complement(6356412..6357854) Delftia acidovorans SPH-1 5751337 YP_001566731.1 CDS Daci_5718 NC_010002.1 6357890 6359971 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_4238 hypothetical protein; peptidase S1 and S6 chymotrypsin/Hap 6357890..6359971 Delftia acidovorans SPH-1 5751338 YP_001566732.1 CDS Daci_5719 NC_010002.1 6360049 6362904 R KEGG: ajs:Ajs_3698 DnaK-related protein; DnaK-like protein complement(6360049..6362904) Delftia acidovorans SPH-1 5751339 YP_001566733.1 CDS Daci_5720 NC_010002.1 6362964 6364829 R KEGG: ajs:Ajs_3696 putative heat-shock chaperone protein; putative heat-shock chaperone protein complement(6362964..6364829) Delftia acidovorans SPH-1 5751340 YP_001566734.1 CDS Daci_5721 NC_010002.1 6364832 6365809 R KEGG: ajs:Ajs_3695 hypothetical protein; hypothetical protein complement(6364832..6365809) Delftia acidovorans SPH-1 5751341 YP_001566735.1 CDS Daci_5722 NC_010002.1 6366017 6366892 D KEGG: mms:mma_1045 hypothetical protein; hypothetical protein 6366017..6366892 Delftia acidovorans SPH-1 5751342 YP_001566736.1 CDS Daci_5723 NC_010002.1 6366993 6367697 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 6366993..6367697 Delftia acidovorans SPH-1 5751343 YP_001566737.1 CDS Daci_5724 NC_010002.1 6367711 6370230 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bpe:BP2860 probable cation-transporting ATPase; heavy metal translocating P-type ATPase complement(6367711..6370230) Delftia acidovorans SPH-1 5751344 YP_001566738.1 CDS Daci_5725 NC_010002.1 6370271 6372289 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: aav:Aave_4022 5'-nucleotidase; 5'-nucleotidase domain-containing protein 6370271..6372289 Delftia acidovorans SPH-1 5751345 YP_001566739.1 CDS Daci_5726 NC_010002.1 6373012 6374739 R PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_A2451 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain, N-terminal:biotin carboxylase, C-terminal; carbamoyl-phosphate synthase subunit L complement(6373012..6374739) Delftia acidovorans SPH-1 5751346 YP_001566740.1 CDS Daci_5727 NC_010002.1 6374789 6376384 R PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: reh:H16_B1758 allophanate hydrolase; allophanate hydrolase subunit 2 complement(6374789..6376384) Delftia acidovorans SPH-1 5751347 YP_001566741.1 CDS Daci_5728 NC_010002.1 6376394 6377152 R PFAM: LamB/YcsF family protein; KEGG: rfr:Rfer_0870 LamB/YcsF; LamB/YcsF family protein complement(6376394..6377152) Delftia acidovorans SPH-1 5751348 YP_001566742.1 CDS Daci_5729 NC_010002.1 6377187 6377855 R KEGG: rfr:Rfer_0871 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase complement(6377187..6377855) Delftia acidovorans SPH-1 5751349 YP_001566743.1 CDS Daci_5730 NC_010002.1 6377872 6378825 R PFAM: protein of unknown function DUF979; KEGG: rfr:Rfer_0872 protein of unknown function DUF979; hypothetical protein complement(6377872..6378825) Delftia acidovorans SPH-1 5751350 YP_001566744.1 CDS Daci_5731 NC_010002.1 6378827 6379576 R PFAM: protein of unknown function DUF969; KEGG: rfr:Rfer_0873 protein of unknown function DUF969; hypothetical protein complement(6378827..6379576) Delftia acidovorans SPH-1 5751352 YP_001566745.1 CDS Daci_5732 NC_010002.1 6379933 6381144 D PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_0045 extracellular ligand-binding receptor; extracellular ligand-binding receptor 6379933..6381144 Delftia acidovorans SPH-1 5751353 YP_001566746.1 CDS Daci_5733 NC_010002.1 6381227 6382252 D PFAM: conserved hypothetical protein; KEGG: reh:H16_B1440 probable extra-cytoplasmic solute receptor; hypothetical protein 6381227..6382252 Delftia acidovorans SPH-1 5751354 YP_001566747.1 CDS Daci_5734 NC_010002.1 6382253 6383308 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bja:bll4016 probable L-allo-threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase 6382253..6383308 Delftia acidovorans SPH-1 5751355 YP_001566748.1 CDS Daci_5735 NC_010002.1 6383380 6384054 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_B1761 transcriptonal regulator, GntR-family; GntR family transcriptional regulator 6383380..6384054 Delftia acidovorans SPH-1 5751356 YP_001566749.1 CDS Daci_5736 NC_010002.1 6384232 6384669 R PFAM: DoxX family protein; KEGG: pfl:PFL_2372 SURF4 domain protein; DoxX family protein complement(6384232..6384669) Delftia acidovorans SPH-1 5751357 YP_001566750.1 CDS Daci_5737 NC_010002.1 6384674 6385033 R KEGG: net:Neut_0038 hypothetical protein; hypothetical protein complement(6384674..6385033) Delftia acidovorans SPH-1 5751358 YP_001566751.1 CDS Daci_5738 NC_010002.1 6385184 6386845 R PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_2364 putative adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(6385184..6386845) Delftia acidovorans SPH-1 5751359 YP_001566752.1 CDS Daci_5739 NC_010002.1 6386972 6387679 D PFAM: cyclic nucleotide-binding; KEGG: neu:NE1296 cyclic nucleotide-binding domain:cAMP-dependent protein kinase; cyclic nucleotide-binding protein 6386972..6387679 Delftia acidovorans SPH-1 5751360 YP_001566753.1 CDS Daci_5740 NC_010002.1 6387676 6389337 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A1931 ABC-type transporter, duplicated ATPase domains:drug RA1 family; ABC transporter-like protein complement(6387676..6389337) Delftia acidovorans SPH-1 5751361 YP_001566754.1 CDS Daci_5741 NC_010002.1 6389661 6392801 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp0312 probable multidrug efflux system transmembrane protein; hydrophobe/amphiphile efflux-1 family protein complement(6389661..6392801) Delftia acidovorans SPH-1 5751362 YP_001566755.1 CDS Daci_5742 NC_010002.1 6392891 6393919 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05454 probable two component response regulator transcription regulator protein; two component transcriptional regulator 6392891..6393919 Delftia acidovorans SPH-1 5751363 YP_001566756.1 CDS Daci_5743 NC_010002.1 6393916 6394989 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rru:Rru_A2930 periplasmic sensor signal transduction histidine kinase; histidine kinase 6393916..6394989 Delftia acidovorans SPH-1 5751364 YP_001566757.1 CDS Daci_5744 NC_010002.1 6395008 6395469 R KEGG: bxe:Bxe_B1644 hypothetical protein; hypothetical protein complement(6395008..6395469) Delftia acidovorans SPH-1 5751365 YP_001566758.1 CDS Daci_5745 NC_010002.1 6395679 6396839 R KEGG: bvi:Bcep1808_1603 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase complement(6395679..6396839) Delftia acidovorans SPH-1 5751366 YP_001566759.1 CDS Daci_5746 NC_010002.1 6396836 6400657 R KEGG: bvi:Bcep1808_1602 cobaltochelatase, CobN subunit; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase; cobaltochelatase subunit CobN complement(6396836..6400657) Delftia acidovorans SPH-1 5751367 YP_001566760.1 CDS Daci_5747 NC_010002.1 6400687 6401736 R TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pae:PA2945 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW complement(6400687..6401736) Delftia acidovorans SPH-1 5751368 YP_001566761.1 CDS Daci_5748 NC_010002.1 6401764 6402786 R PFAM: luciferase family protein; KEGG: nha:Nham_0958 luciferase-like; luciferase family protein complement(6401764..6402786) Delftia acidovorans SPH-1 5751369 YP_001566762.1 CDS Daci_5749 NC_010002.1 6402791 6403558 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_07945 ferrichrome ABC transporter ATP-binding protein; ABC transporter-like protein complement(6402791..6403558) Delftia acidovorans SPH-1 5751370 YP_001566763.1 CDS Daci_5750 NC_010002.1 6403555 6404577 R PFAM: transport system permease protein; KEGG: mes:Meso_1443 transport system permease protein; transport system permease complement(6403555..6404577) Delftia acidovorans SPH-1 5751371 YP_001566764.1 CDS Daci_5751 NC_010002.1 6404574 6405515 R PFAM: periplasmic binding protein; KEGG: rxy:Rxyl_2468 periplasmic binding protein; periplasmic-binding protein complement(6404574..6405515) Delftia acidovorans SPH-1 5751372 YP_001566765.1 CDS Daci_5752 NC_010002.1 6405526 6407766 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein; TonB-dependent receptor complement(6405526..6407766) Delftia acidovorans SPH-1 5751373 YP_001566766.1 CDS Daci_5753 NC_010002.1 6408230 6409105 R PFAM: CHAD domain containing protein; KEGG: aav:Aave_4030 adenylate cyclase; CHAD domain-containing protein complement(6408230..6409105) Delftia acidovorans SPH-1 5751374 YP_001566767.1 CDS Daci_5754 NC_010002.1 6409175 6409666 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bch:Bcen2424_4448 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(6409175..6409666) Delftia acidovorans SPH-1 5751375 YP_001566768.1 CDS Daci_5755 NC_010002.1 6409724 6410374 D PFAM: YheO domain protein; KEGG: rme:Rmet_4823 hypothetical protein; YheO domain-containing protein 6409724..6410374 Delftia acidovorans SPH-1 5751376 YP_001566769.1 CDS Daci_5756 NC_010002.1 6410419 6411381 D catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; serine/threonine dehydratase 6410419..6411381 Delftia acidovorans SPH-1 5751377 YP_001566770.1 CDS Daci_5757 NC_010002.1 6411413 6412147 R PFAM: NUDIX hydrolase; KEGG: pna:Pnap_3721 NUDIX hydrolase; NUDIX hydrolase complement(6411413..6412147) Delftia acidovorans SPH-1 5751378 YP_001566771.1 CDS Daci_5758 NC_010002.1 6412236 6413309 D PFAM: band 7 protein; KEGG: bbt:BBta_5114 hypothetical protein; hypothetical protein 6412236..6413309 Delftia acidovorans SPH-1 5751379 YP_001566772.1 CDS Daci_5759 NC_010002.1 6413296 6414228 D KEGG: bbt:BBta_5115 hypothetical protein; hypothetical protein 6413296..6414228 Delftia acidovorans SPH-1 5751380 YP_001566773.1 CDS Daci_5760 NC_010002.1 6414270 6415454 D PFAM: phosphotransferase KptA/Tpt1; KEGG: rfr:Rfer_1178 hypothetical protein; phosphate acetyltransferase 6414270..6415454 Delftia acidovorans SPH-1 5751381 YP_001566774.1 CDS Daci_5761 NC_010002.1 6415483 6416064 D PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein; hypothetical protein 6415483..6416064 Delftia acidovorans SPH-1 5751382 YP_001566775.1 CDS Daci_5762 NC_010002.1 6416061 6417029 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfl:PFL_4115 ADP-ribosylglycohydrolase family protein; ADP-ribosylation/crystallin J1 6416061..6417029 Delftia acidovorans SPH-1 5751383 YP_001566776.1 CDS Daci_5763 NC_010002.1 6417267 6418457 D PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein; fimbrial protein 6417267..6418457 Delftia acidovorans SPH-1 5751384 YP_001566777.1 CDS Daci_5764 NC_010002.1 6418473 6418886 R KEGG: bur:Bcep18194_B0494 hypothetical protein; hypothetical protein complement(6418473..6418886) Delftia acidovorans SPH-1 5751385 YP_001566778.1 CDS Daci_5765 NC_010002.1 6419111 6419971 D PFAM: extracellular solute-binding protein family 3; KEGG: pst:PSPTO_2627 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 6419111..6419971 Delftia acidovorans SPH-1 5751386 YP_001566779.1 CDS Daci_5766 NC_010002.1 6420061 6420987 D PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_C1129 ABC polar amino acid family transporter, periplasmic ligand binding protein; extracellular solute-binding protein 6420061..6420987 Delftia acidovorans SPH-1 5751387 YP_001566780.1 CDS Daci_5767 NC_010002.1 6420984 6421802 D PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_C1129 ABC polar amino acid family transporter, periplasmic ligand binding protein; extracellular solute-binding protein 6420984..6421802 Delftia acidovorans SPH-1 5751388 YP_001566781.1 CDS Daci_5768 NC_010002.1 6421799 6423358 D PFAM: FAD linked oxidase domain protein; KEGG: bpe:BP3139 putative oxidoreductase; FAD linked oxidase domain-containing protein 6421799..6423358 Delftia acidovorans SPH-1 5751389 YP_001566782.1 CDS Daci_5769 NC_010002.1 6423355 6424626 D PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_2925 aspartate aminotransferase; class I/II aminotransferase 6423355..6424626 Delftia acidovorans SPH-1 5751390 YP_001566783.1 CDS Daci_5770 NC_010002.1 6424623 6425372 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2628 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane protein 6424623..6425372 Delftia acidovorans SPH-1 5751391 YP_001566784.1 CDS Daci_5771 NC_010002.1 6425362 6426183 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2629 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane protein 6425362..6426183 Delftia acidovorans SPH-1 5751392 YP_001566785.1 CDS Daci_5772 NC_010002.1 6426170 6427180 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2630 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 6426170..6427180 Delftia acidovorans SPH-1 5751393 YP_001566786.1 CDS Daci_5773 NC_010002.1 6427206 6427877 D KEGG: bxe:Bxe_C1132 hypothetical protein; hypothetical protein 6427206..6427877 Delftia acidovorans SPH-1 5751394 YP_001566787.1 CDS Daci_5774 NC_010002.1 6427874 6429097 D KEGG: bxe:Bxe_C1131 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase 6427874..6429097 Delftia acidovorans SPH-1 5751395 YP_001566788.1 CDS Daci_5775 NC_010002.1 6429910 6432234 R PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B2410 putative rhodanese-like domain protein; rhodanese domain-containing protein complement(6429910..6432234) Delftia acidovorans SPH-1 5751396 YP_001566789.1 CDS Daci_5776 NC_010002.1 6432358 6433347 D PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein 6432358..6433347 Delftia acidovorans SPH-1 5751397 YP_001566790.1 CDS Daci_5777 NC_010002.1 6433305 6433814 R PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3176 hypothetical protein; N-acetyltransferase GCN5 complement(6433305..6433814) Delftia acidovorans SPH-1 5751398 YP_001566791.1 CDS Daci_5778 NC_010002.1 6433930 6434430 R KEGG: bur:Bcep18194_B0957 hypothetical protein; hypothetical protein complement(6433930..6434430) Delftia acidovorans SPH-1 5751399 YP_001566792.1 CDS Daci_5779 NC_010002.1 6434411 6435217 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B0958 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(6434411..6435217) Delftia acidovorans SPH-1 5751400 YP_001566793.1 CDS Daci_5780 NC_010002.1 6435378 6435905 D PFAM: helix-turn-helix HxlR type; KEGG: bur:Bcep18194_B0959 putative transcriptional regulator; HxlR family transcriptional regulator 6435378..6435905 Delftia acidovorans SPH-1 5751401 YP_001566794.1 CDS Daci_5781 NC_010002.1 6435914 6436717 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pmy:Pmen_3327 transcriptional regulator, AraC family; AraC family transcriptional regulator 6435914..6436717 Delftia acidovorans SPH-1 5751402 YP_001566795.1 CDS Daci_5782 NC_010002.1 6436811 6437431 D PFAM: ThiJ/PfpI domain protein; KEGG: rfr:Rfer_2521 ThiJ/PfpI; ThiJ/PfpI domain-containing protein 6436811..6437431 Delftia acidovorans SPH-1 5751403 YP_001566796.1 CDS Daci_5783 NC_010002.1 6437439 6438389 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pfl:PFL_4987 hypothetical protein; hypothetical protein 6437439..6438389 Delftia acidovorans SPH-1 5751404 YP_001566797.1 CDS Daci_5784 NC_010002.1 6438431 6438994 R PFAM: beta-Ig-H3/fasciclin; KEGG: aav:Aave_3256 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin complement(6438431..6438994) Delftia acidovorans SPH-1 5751405 YP_001566798.1 CDS Daci_5785 NC_010002.1 6439306 6440277 D KEGG: bur:Bcep18194_C6576 hypothetical protein; hypothetical protein 6439306..6440277 Delftia acidovorans SPH-1 5751406 YP_001566799.1 CDS Daci_5786 NC_010002.1 6440372 6440611 D hypothetical protein 6440372..6440611 Delftia acidovorans SPH-1 5751407 YP_001566800.1 CDS Daci_5787 NC_010002.1 6440657 6442027 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bja:bll5044 manganese transport protein; Mn2+/Fe2+ transporter 6440657..6442027 Delftia acidovorans SPH-1 5751408 YP_001566801.1 CDS Daci_5788 NC_010002.1 6442177 6442656 D SMART: Rhodanese domain protein; KEGG: pna:Pnap_0538 rhodanese domain protein; rhodanese domain-containing protein 6442177..6442656 Delftia acidovorans SPH-1 5751409 YP_001566802.1 CDS Daci_5789 NC_010002.1 6442669 6443583 D KEGG: pna:Pnap_0539 serine O-acetyltransferase; serine O-acetyltransferase 6442669..6443583 Delftia acidovorans SPH-1 5751410 YP_001566803.1 CDS Daci_5790 NC_010002.1 6443580 6443852 D PFAM: helix-turn-helix domain protein; KEGG: pna:Pnap_0540 helix-turn-helix domain protein; XRE family transcriptional regulator 6443580..6443852 Delftia acidovorans SPH-1 5751411 YP_001566804.1 CDS Daci_5791 NC_010002.1 6443936 6444868 D KEGG: mms:mma_2536 major membrane protein I; major membrane protein I 6443936..6444868 Delftia acidovorans SPH-1 5751412 YP_001566805.1 CDS Daci_5792 NC_010002.1 6444881 6446806 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pna:Pnap_0543 cysteine desulfurases, SufS subfamily; SufS subfamily cysteine desulfurase 6444881..6446806 Delftia acidovorans SPH-1 5751413 YP_001566806.1 CDS Daci_5793 NC_010002.1 6447162 6448097 D PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein; fimbrial protein 6447162..6448097 Delftia acidovorans SPH-1 5751414 YP_001566807.1 CDS Daci_5794 NC_010002.1 6448188 6449144 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B5438 hypothetical protein; hypothetical protein complement(6448188..6449144) Delftia acidovorans SPH-1 5751415 YP_001566808.1 CDS Daci_5795 NC_010002.1 6449189 6450184 R PFAM: conserved hypothetical protein; KEGG: reh:H16_B1820 probable extra-cytoplasmic solute receptor; hypothetical protein complement(6449189..6450184) Delftia acidovorans SPH-1 5751416 YP_001566809.1 CDS Daci_5796 NC_010002.1 6450250 6451314 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: reh:H16_B1819 D-3-phosphoglycerate dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(6450250..6451314) Delftia acidovorans SPH-1 5751417 YP_001566810.1 CDS Daci_5797 NC_010002.1 6451314 6451991 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: reh:H16_B1818 demethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase complement(6451314..6451991) Delftia acidovorans SPH-1 5751418 YP_001566811.1 CDS Daci_5798 NC_010002.1 6452051 6453298 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: reh:H16_B1817 L-lactate cytochrome c reductase; L-lactate dehydrogenase complement(6452051..6453298) Delftia acidovorans SPH-1 5751419 YP_001566812.1 CDS Daci_5799 NC_010002.1 6453382 6454302 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B1816 transcriptional regulator, LysR-family; LysR family transcriptional regulator 6453382..6454302 Delftia acidovorans SPH-1 5751420 YP_001566813.1 CDS Daci_5800 NC_010002.1 6454594 6455436 D PFAM: GCN5-related N-acetyltransferase; KEGG: gur:Gura_0749 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 6454594..6455436 Delftia acidovorans SPH-1 5751421 YP_001566814.1 CDS Daci_5801 NC_010002.1 6455433 6455954 D PFAM: Tail Collar domain protein; KEGG: son:SO_0185 hypothetical microcystin dependent protein; tail collar domain-containing protein 6455433..6455954 Delftia acidovorans SPH-1 5751422 YP_001566815.1 CDS Daci_5802 NC_010002.1 6455973 6456473 D PFAM: Tail Collar domain protein; KEGG: aba:Acid345_2454 phage tail collar; tail collar domain-containing protein 6455973..6456473 Delftia acidovorans SPH-1 5751423 YP_001566816.1 CDS Daci_5803 NC_010002.1 6456502 6457044 D PFAM: Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB; tail collar domain-containing protein 6456502..6457044 Delftia acidovorans SPH-1 5751424 YP_001566817.1 CDS Daci_5804 NC_010002.1 6457155 6461339 D PFAM: cell surface receptor IPT/TIG domain protein; Ig family protein; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel; cell surface receptor IPT/TIG domain-containing protein 6457155..6461339 Delftia acidovorans SPH-1 5751425 YP_001566818.1 CDS Daci_5805 NC_010002.1 6461438 6461647 D KEGG: bbr:BB3303 hypothetical protein; hypothetical protein 6461438..6461647 Delftia acidovorans SPH-1 5751426 YP_001566819.1 CDS Daci_5806 NC_010002.1 6461677 6462147 R PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_2665 endoribonuclease L-PSP; endoribonuclease L-PSP complement(6461677..6462147) Delftia acidovorans SPH-1 5751427 YP_001566820.1 CDS Daci_5807 NC_010002.1 6462338 6463153 R PFAM: protein of unknown function DUF990; KEGG: aav:Aave_2071 protein of unknown function DUF990; hypothetical protein complement(6462338..6463153) Delftia acidovorans SPH-1 5751428 YP_001566821.1 CDS Daci_5808 NC_010002.1 6463159 6464028 R KEGG: reu:Reut_A1068 putative ABC transporter permease protein; putative ABC transporter permease complement(6463159..6464028) Delftia acidovorans SPH-1 5751429 YP_001566822.1 CDS Daci_5809 NC_010002.1 6464034 6464912 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1069 ABC transporter related; ABC transporter-like protein complement(6464034..6464912) Delftia acidovorans SPH-1 5751430 YP_001566823.1 CDS Daci_5810 NC_010002.1 6465008 6466840 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pmy:Pmen_2368 potassium efflux system protein; potassium efflux system protein 6465008..6466840 Delftia acidovorans SPH-1 5751431 YP_001566824.1 CDS Daci_5811 NC_010002.1 6466865 6467254 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(6466865..6467254) Delftia acidovorans SPH-1 5751432 YP_001566825.1 CDS Daci_5812 NC_010002.1 6467321 6467674 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein; TonB family protein complement(6467321..6467674) Delftia acidovorans SPH-1 5751433 YP_001566826.1 CDS Daci_5813 NC_010002.1 6467743 6470115 R SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: ajs:Ajs_2428 helicase C2; helicase c2 complement(6467743..6470115) Delftia acidovorans SPH-1 5751434 YP_001566827.1 CDS Daci_5814 NC_010002.1 6470112 6471788 R PFAM: VRR-NUC domain protein; KEGG: ajs:Ajs_2429 hypothetical protein; VRR-NUC domain-containing protein complement(6470112..6471788) Delftia acidovorans SPH-1 5751435 YP_001566828.1 CDS Daci_5815 NC_010002.1 6471898 6472710 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7249 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(6471898..6472710) Delftia acidovorans SPH-1 5751436 YP_001566829.1 CDS Daci_5816 NC_010002.1 6472881 6473084 D KEGG: reh:H16_B1205 hypothetical protein; hypothetical protein 6472881..6473084 Delftia acidovorans SPH-1 5751437 YP_001566830.1 CDS Daci_5817 NC_010002.1 6473081 6473461 D KEGG: reh:H16_B1204 hypothetical protein; hypothetical protein 6473081..6473461 Delftia acidovorans SPH-1 5751438 YP_001566831.1 CDS Daci_5818 NC_010002.1 6473511 6475388 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bra:BRADO1420 aminopeptidase; homologous to antibiotic hydrolase or cocain esterase; X-Pro dipeptidyl-peptidase domain-containing protein complement(6473511..6475388) Delftia acidovorans SPH-1 5751439 YP_001566832.1 CDS Daci_5819 NC_010002.1 6475400 6476389 R PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein complement(6475400..6476389) Delftia acidovorans SPH-1 5751440 YP_001566833.1 CDS Daci_5820 NC_010002.1 6476414 6477430 R PFAM: porin Gram-negative type; KEGG: reh:H16_A1305 outer membrane protein (porin); porin complement(6476414..6477430) Delftia acidovorans SPH-1 5751441 YP_001566834.1 CDS Daci_5821 NC_010002.1 6477572 6478522 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ccr:CC_1621 transcriptional regulator, LysR family; LysR family transcriptional regulator 6477572..6478522 Delftia acidovorans SPH-1 5751442 YP_001566835.1 CDS Daci_5822 NC_010002.1 6478544 6479269 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_2932 probable permease of ABC transporter; binding-protein-dependent transport system inner membrane protein complement(6478544..6479269) Delftia acidovorans SPH-1 5751443 YP_001566836.1 CDS Daci_5823 NC_010002.1 6479293 6480456 R KEGG: ppu:PP_3636 sulfonate ABC transporter, periplasmic sulfonate-binding protein, putative; sulfonate ABC transporter periplasmic sulfonate-binding protein complement(6479293..6480456) Delftia acidovorans SPH-1 5751444 YP_001566837.1 CDS Daci_5824 NC_010002.1 6480624 6481439 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_34500 putative ATP-binding component of ABC transporter; ABC transporter-like protein complement(6480624..6481439) Delftia acidovorans SPH-1 5751445 YP_001566838.1 CDS Daci_5825 NC_010002.1 6481436 6482533 R KEGG: pau:PA14_34490 putative acyl-CoA dehydrogenase; putative acyl-CoA dehydrogenase complement(6481436..6482533) Delftia acidovorans SPH-1 5751446 YP_001566839.1 CDS Daci_5826 NC_010002.1 6482523 6483164 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_B1537 alkylhydroperoxidase AhpD core; alkylhydroperoxidase complement(6482523..6483164) Delftia acidovorans SPH-1 5751447 YP_001566840.1 CDS Daci_5827 NC_010002.1 6483239 6484309 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B1536 putative transcriptional regulator, AraC family; AraC family transcriptional regulator complement(6483239..6484309) Delftia acidovorans SPH-1 5751448 YP_001566841.1 CDS Daci_5828 NC_010002.1 6484343 6485116 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_C6884 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(6484343..6485116) Delftia acidovorans SPH-1 5751449 YP_001566842.1 CDS Daci_5829 NC_010002.1 6485296 6486564 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2124 major facilitator superfamily MFS_1; major facilitator transporter 6485296..6486564 Delftia acidovorans SPH-1 5751450 YP_001566843.1 CDS Daci_5830 NC_010002.1 6486574 6487593 R PFAM: conserved hypothetical protein; KEGG: vei:Veis_0038 uncharacterized protein UPF0065; hypothetical protein complement(6486574..6487593) Delftia acidovorans SPH-1 5751451 YP_001566844.1 CDS Daci_5831 NC_010002.1 6487788 6489560 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 6487788..6489560 Delftia acidovorans SPH-1 5751452 YP_001566845.1 CDS Daci_5832 NC_010002.1 6489564 6490343 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_B3951 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator 6489564..6490343 Delftia acidovorans SPH-1 5751453 YP_001566846.1 CDS Daci_5833 NC_010002.1 6490374 6490691 R PFAM: plasmid stabilization system; KEGG: bam:Bamb_6594 plasmid stabilization system; plasmid stabilization system protein complement(6490374..6490691) Delftia acidovorans SPH-1 5751454 YP_001566847.1 CDS Daci_5834 NC_010002.1 6490688 6490957 R KEGG: vei:Veis_2291 putative transcriptional regulators, CopG/Arc/MetJ family; CopG/Arc/MetJ family transcriptional regulator complement(6490688..6490957) Delftia acidovorans SPH-1 5751455 YP_001566848.1 CDS Daci_5835 NC_010002.1 6491047 6491877 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rru:Rru_A3128 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(6491047..6491877) Delftia acidovorans SPH-1 5751456 YP_001566849.1 CDS Daci_5836 NC_010002.1 6491948 6492610 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rru:Rru_A3127 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 6491948..6492610 Delftia acidovorans SPH-1 5751457 YP_001566850.1 CDS Daci_5837 NC_010002.1 6492847 6493359 R PFAM: MgtC/SapB transporter; KEGG: bpa:BPP3813 putative Mg(2+) transporter; MgtC/SapB transporter complement(6492847..6493359) Delftia acidovorans SPH-1 5751458 YP_001566851.1 CDS Daci_5838 NC_010002.1 6493475 6494932 R PFAM: Chloride channel core; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; chloride channel core complement(6493475..6494932) Delftia acidovorans SPH-1 5751459 YP_001566852.1 CDS Daci_5839 NC_010002.1 6495090 6496007 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_4280 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6495090..6496007) Delftia acidovorans SPH-1 5751460 YP_001566853.1 CDS Daci_5840 NC_010002.1 6496125 6497174 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bvi:Bcep1808_4278 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 6496125..6497174 Delftia acidovorans SPH-1 5751461 YP_001566854.1 CDS Daci_5841 NC_010002.1 6497213 6497638 R PFAM: PilT protein domain protein; KEGG: vei:Veis_3474 PilT protein domain protein; PilT domain-containing protein complement(6497213..6497638) Delftia acidovorans SPH-1 5751462 YP_001566855.1 CDS Daci_5842 NC_010002.1 6497635 6497892 R KEGG: vei:Veis_3475 plasmid stability protein StbC; plasmid stability protein StbC complement(6497635..6497892) Delftia acidovorans SPH-1 5751463 YP_001566856.1 CDS Daci_5843 NC_010002.1 6497996 6498793 R catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase complement(6497996..6498793) Delftia acidovorans SPH-1 5751464 YP_001566857.1 CDS Daci_5844 NC_010002.1 6498790 6499668 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2821 putative precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase complement(6498790..6499668) Delftia acidovorans SPH-1 5751465 YP_001566858.1 CDS Daci_5845 NC_010002.1 6499665 6500162 R KEGG: sil:SPO2870 cobalamin biosynthesis domain protein; hypothetical protein complement(6499665..6500162) Delftia acidovorans SPH-1 5751466 YP_001566859.1 CDS Daci_5846 NC_010002.1 6500159 6501361 R KEGG: rsh:Rsph17029_1473 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(6500159..6501361) Delftia acidovorans SPH-1 5751467 YP_001566860.1 CDS Daci_5847 NC_010002.1 6501405 6502154 D KEGG: rsq:Rsph17025_1522 precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; precorrin-6x reductase 6501405..6502154 Delftia acidovorans SPH-1 5751468 YP_001566861.1 CDS Daci_5848 NC_010002.1 6502088 6502921 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsh:Rsph17029_1471 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(6502088..6502921) Delftia acidovorans SPH-1 5751469 YP_001566862.1 CDS Daci_5849 NC_010002.1 6502915 6503685 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bja:blr3266 precorrin-2 C20 methyltransferase; precorrin-2 C(20)-methyltransferase complement(6502915..6503685) Delftia acidovorans SPH-1 5751470 YP_001566863.1 CDS cobH NC_010002.1 6503675 6504304 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(6503675..6504304) Delftia acidovorans SPH-1 5751471 YP_001566864.1 CDS Daci_5851 NC_010002.1 6504304 6505608 R TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sit:TM1040_2211 precorrin-3B synthase; precorrin-3B synthase complement(6504304..6505608) Delftia acidovorans SPH-1 5751472 YP_001566865.1 CDS Daci_5852 NC_010002.1 6505703 6507559 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bte:BTH_I2374 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 6505703..6507559 Delftia acidovorans SPH-1 5751473 YP_001566866.1 CDS Daci_5853 NC_010002.1 6507578 6508705 D PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor; anti-FecI sigma factor FecR 6507578..6508705 Delftia acidovorans SPH-1 5751474 YP_001566867.1 CDS Daci_5854 NC_010002.1 6508674 6509675 D KEGG: rme:Rmet_2396 thiol:disulfide interchange protein; protein-disulfide isomerase-like protein 6508674..6509675 Delftia acidovorans SPH-1 5751475 YP_001566868.1 CDS Daci_5855 NC_010002.1 6509770 6510411 D PFAM: Glutathione S-transferase domain; KEGG: ccr:CC_2901 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 6509770..6510411 Delftia acidovorans SPH-1 5751476 YP_001566869.1 CDS Daci_5856 NC_010002.1 6510436 6511917 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: eca:ECA3446 multidrug resistance outer membrane protein; RND efflux system outer membrane lipoprotein complement(6510436..6511917) Delftia acidovorans SPH-1 5751477 YP_001566870.1 CDS Daci_5857 NC_010002.1 6511923 6515072 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pst:PSPTO_2592 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 family protein complement(6511923..6515072) Delftia acidovorans SPH-1 5751478 YP_001566871.1 CDS Daci_5858 NC_010002.1 6515099 6516328 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC; RND family efflux transporter MFP subunit complement(6515099..6516328) Delftia acidovorans SPH-1 5751479 YP_001566872.1 CDS Daci_5859 NC_010002.1 6516466 6517032 D KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB; transcriptional regulator NfxB 6516466..6517032 Delftia acidovorans SPH-1 5751480 YP_001566873.1 CDS Daci_5860 NC_010002.1 6517177 6518091 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2782 transcriptional regulator, LysR family; LysR family transcriptional regulator 6517177..6518091 Delftia acidovorans SPH-1 5751481 YP_001566874.1 CDS Daci_5861 NC_010002.1 6518079 6520706 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(6518079..6520706) Delftia acidovorans SPH-1 5751482 YP_001566875.1 CDS Daci_5862 NC_010002.1 6520768 6521964 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(6520768..6521964) Delftia acidovorans SPH-1 5751483 YP_001566876.1 CDS Daci_5863 NC_010002.1 6521961 6522359 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1636 thioesterase superfamily protein; thioesterase superfamily protein complement(6521961..6522359) Delftia acidovorans SPH-1 5751484 YP_001566877.1 CDS Daci_5864 NC_010002.1 6522477 6523889 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: vei:Veis_4449 protein of unknown function DUF955; XRE family transcriptional regulator 6522477..6523889 Delftia acidovorans SPH-1 5751485 YP_001566878.1 CDS Daci_5865 NC_010002.1 6523926 6524891 R PFAM: conserved hypothetical protein; KEGG: aav:Aave_1446 hypothetical protein; hypothetical protein complement(6523926..6524891) Delftia acidovorans SPH-1 5751486 YP_001566879.1 CDS Daci_5866 NC_010002.1 6525199 6525513 D KEGG: har:HEAR3316 hypothetical protein; hypothetical protein 6525199..6525513 Delftia acidovorans SPH-1 5751487 YP_001566880.1 CDS Daci_5867 NC_010002.1 6525539 6526060 D PFAM: protein of unknown function DUF1452; KEGG: bxe:Bxe_C0074 hypothetical protein; hypothetical protein 6525539..6526060 Delftia acidovorans SPH-1 5751488 YP_001566881.1 CDS Daci_5868 NC_010002.1 6526091 6526324 D KEGG: mfa:Mfla_1423 hypothetical protein; hypothetical protein 6526091..6526324 Delftia acidovorans SPH-1 5751489 YP_001566882.1 CDS Daci_5869 NC_010002.1 6526332 6527150 D KEGG: ajs:Ajs_0503 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 6526332..6527150 Delftia acidovorans SPH-1 5751490 YP_001566883.1 CDS Daci_5870 NC_010002.1 6527147 6528691 D PFAM: glycosyl transferase family 20; KEGG: pna:Pnap_0524 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase 6527147..6528691 Delftia acidovorans SPH-1 5751491 YP_001566884.1 CDS Daci_5871 NC_010002.1 6528803 6529894 D KEGG: bxe:Bxe_A2027 putative acyl-CoA dehydrogenase-related protein; putative acyl-CoA dehydrogenase-like protein 6528803..6529894 Delftia acidovorans SPH-1 5751492 YP_001566885.1 CDS Daci_5872 NC_010002.1 6529882 6530640 D PFAM: LmbE family protein; KEGG: rha:RHA1_ro00129 hypothetical protein; LmbE family protein 6529882..6530640 Delftia acidovorans SPH-1 5751493 YP_001566886.1 CDS Daci_5873 NC_010002.1 6530637 6531230 D PFAM: NodS family protein; Methyltransferase type 12; KEGG: bxe:Bxe_A2028 putative methyltransferase protein; type 12 methyltransferase 6530637..6531230 Delftia acidovorans SPH-1 5751494 YP_001566887.1 CDS Daci_5874 NC_010002.1 6531243 6532055 D PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2029 putative glycosyl transferase, family 2; glycosyl transferase family protein 6531243..6532055 Delftia acidovorans SPH-1 5751495 YP_001566888.1 CDS Daci_5875 NC_010002.1 6532086 6532577 R PFAM: DinB family protein; KEGG: bch:Bcen2424_1988 DinB family protein; DinB family protein complement(6532086..6532577) Delftia acidovorans SPH-1 5751496 YP_001566889.1 CDS Daci_5876 NC_010002.1 6532660 6533499 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: atc:AGR_L_1187 hypothetical protein PA1367; PhzF family phenazine biosynthesis protein complement(6532660..6533499) Delftia acidovorans SPH-1 5751497 YP_001566890.1 CDS Daci_5877 NC_010002.1 6533581 6533985 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_L_1189 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(6533581..6533985) Delftia acidovorans SPH-1 5751498 YP_001566891.1 CDS Daci_5878 NC_010002.1 6534055 6535422 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bch:Bcen2424_1984 transcriptional regulator, GntR family; transcriptional regulator 6534055..6535422 Delftia acidovorans SPH-1 5751499 YP_001566892.1 CDS Daci_5879 NC_010002.1 6535406 6535810 R KEGG: cvi:CV_3228 hypothetical protein; hypothetical protein complement(6535406..6535810) Delftia acidovorans SPH-1 5751500 YP_001566893.1 CDS Daci_5880 NC_010002.1 6535852 6536643 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_1455 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(6535852..6536643) Delftia acidovorans SPH-1 5751501 YP_001566894.1 CDS Daci_5881 NC_010002.1 6536650 6537210 R KEGG: mpt:Mpe_A0231 lipoprotein, putative; putative lipoprotein complement(6536650..6537210) Delftia acidovorans SPH-1 5751502 YP_001566895.1 CDS Daci_5882 NC_010002.1 6537207 6538544 R KEGG: mpt:Mpe_A0232 sodium:galactoside symporter family protein; sodium:galactoside symporter family protein complement(6537207..6538544) Delftia acidovorans SPH-1 5751503 YP_001566896.1 CDS Daci_5883 NC_010002.1 6538563 6539180 R KEGG: pna:Pnap_1452 hypothetical protein; hypothetical protein complement(6538563..6539180) Delftia acidovorans SPH-1 5751504 YP_001566897.1 CDS Daci_5884 NC_010002.1 6539177 6540445 R PFAM: putative RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0234 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(6539177..6540445) Delftia acidovorans SPH-1 5751505 YP_001566898.1 CDS Daci_5885 NC_010002.1 6540442 6541194 R PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein; hypothetical protein complement(6540442..6541194) Delftia acidovorans SPH-1 5751506 YP_001566899.1 CDS Daci_5886 NC_010002.1 6541191 6542537 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A0236 putative dehydrogenase; amine oxidase complement(6541191..6542537) Delftia acidovorans SPH-1 5751507 YP_001566900.1 CDS Daci_5887 NC_010002.1 6542678 6543316 D PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A3699 putative transcription regulator, TetR family; TetR family transcriptional regulator 6542678..6543316 Delftia acidovorans SPH-1 5751508 YP_001566901.1 CDS Daci_5888 NC_010002.1 6543622 6544770 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbt:BBta_5602 putative transcriptional regulatory protein, AraC/XylS family; AraC family transcriptional regulator 6543622..6544770 Delftia acidovorans SPH-1 5751509 YP_001566902.1 CDS Daci_5889 NC_010002.1 6544930 6547509 D PFAM: cell surface receptor IPT/TIG domain protein; KEGG: bra:BRADO3823 hypothetical protein; cell surface receptor IPT/TIG domain-containing protein 6544930..6547509 Delftia acidovorans SPH-1 5751510 YP_001566903.1 CDS Daci_5890 NC_010002.1 6547784 6548263 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 6547784..6548263 Delftia acidovorans SPH-1 5751511 YP_001566904.1 CDS Daci_5891 NC_010002.1 6548236 6549219 D PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor; anti-FecI sigma factor FecR 6548236..6549219 Delftia acidovorans SPH-1 5751512 YP_001566905.1 CDS Daci_5892 NC_010002.1 6549317 6551848 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_1118 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 6549317..6551848 Delftia acidovorans SPH-1 5751513 YP_001566906.1 CDS Daci_5893 NC_010002.1 6551986 6552501 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: azo:azo2373 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 6551986..6552501 Delftia acidovorans SPH-1 5751514 YP_001566907.1 CDS Daci_5894 NC_010002.1 6552498 6553559 D PFAM: FecR protein; KEGG: neu:NE0979 putative transmembrane sensor; anti-FecI sigma factor FecR 6552498..6553559 Delftia acidovorans SPH-1 5751515 YP_001566908.1 CDS Daci_5895 NC_010002.1 6553702 6556185 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: bur:Bcep18194_A4504 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 6553702..6556185 Delftia acidovorans SPH-1 5751516 YP_001566909.1 CDS Daci_5896 NC_010002.1 6556247 6557059 D KEGG: rso:RSc0801 putative lipoprotein transmembrane; putative lipoprotein transmembrane 6556247..6557059 Delftia acidovorans SPH-1 5751517 YP_001566910.1 CDS Daci_5897 NC_010002.1 6557155 6559272 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD2049 putative ferric siderophore receptor protein; TonB-dependent siderophore receptor 6557155..6559272 Delftia acidovorans SPH-1 5751518 YP_001566911.1 CDS Daci_5898 NC_010002.1 6559749 6560129 R KEGG: ddi:DDBDRAFT_0192024 hypothetical protein; hypothetical protein complement(6559749..6560129) Delftia acidovorans SPH-1 5751519 YP_001566912.1 CDS Daci_5899 NC_010002.1 6560162 6562081 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: ajs:Ajs_0641 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase complement(6560162..6562081) Delftia acidovorans SPH-1 5751520 YP_001566913.1 CDS Daci_5900 NC_010002.1 6562219 6562734 D PFAM: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_4037 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 6562219..6562734 Delftia acidovorans SPH-1 5751521 YP_001566914.1 CDS Daci_5901 NC_010002.1 6562952 6564112 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN1308 hypothetical protein; diguanylate cyclase 6562952..6564112 Delftia acidovorans SPH-1 5751522 YP_001566915.1 CDS Daci_5902 NC_010002.1 6564138 6564998 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0637 histidine kinase; histidine kinase complement(6564138..6564998) Delftia acidovorans SPH-1 5751523 YP_001566916.1 CDS Daci_5903 NC_010002.1 6565093 6566523 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: ajs:Ajs_0636 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(6565093..6566523) Delftia acidovorans SPH-1 5751524 YP_001566917.1 CDS Daci_5904 NC_010002.1 6566628 6567602 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_4044 transcriptional regulator, LysR family; LysR family transcriptional regulator 6566628..6567602 Delftia acidovorans SPH-1 5751525 YP_001566918.1 CDS Daci_5905 NC_010002.1 6567729 6568961 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(6567729..6568961) Delftia acidovorans SPH-1 5751526 YP_001566919.1 CDS Daci_5906 NC_010002.1 6569129 6570523 D PFAM: peptidase M23B; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase M23B 6569129..6570523 Delftia acidovorans SPH-1 5751527 YP_001566920.1 CDS anmK NC_010002.1 6570629 6571777 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 6570629..6571777 Delftia acidovorans SPH-1 5751528 YP_001566921.1 CDS Daci_5908 NC_010002.1 6571865 6573163 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: reu:Reut_B5339 xanthine/uracil/vitamin C permease:sulphate transporter; xanthine/uracil/vitamin C permease complement(6571865..6573163) Delftia acidovorans SPH-1 5751529 YP_001566922.1 CDS Daci_5909 NC_010002.1 6573340 6575766 R KEGG: mpt:Mpe_A0798 xanthine dehydrogenase; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; xanthine dehydrogenase, molybdopterin-binding subunit complement(6573340..6575766) Delftia acidovorans SPH-1 5751530 YP_001566923.1 CDS Daci_5910 NC_010002.1 6575768 6577381 R TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: mpt:Mpe_A0799 putative xanthine dehydrogenase (subunit A) oxidoreductase protein; xanthine dehydrogenase small subunit complement(6575768..6577381) Delftia acidovorans SPH-1 5751531 YP_001566924.1 CDS Daci_5911 NC_010002.1 6577661 6579103 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2090 major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter complement(6577661..6579103) Delftia acidovorans SPH-1 5751532 YP_001566925.1 CDS Daci_5912 NC_010002.1 6579220 6579594 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(6579220..6579594) Delftia acidovorans SPH-1 5751533 YP_001566926.1 CDS rpsI NC_010002.1 6579809 6580201 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(6579809..6580201) Delftia acidovorans SPH-1 5751534 YP_001566927.1 CDS rplM NC_010002.1 6580212 6580640 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(6580212..6580640) Delftia acidovorans SPH-1 5751535 YP_001566928.1 CDS Daci_5915 NC_010002.1 6580889 6581761 D PFAM: protein of unknown function DUF519; KEGG: vei:Veis_1788 protein of unknown function DUF519; hypothetical protein 6580889..6581761 Delftia acidovorans SPH-1 5751536 YP_001566929.1 CDS Daci_5916 NC_010002.1 6581769 6582680 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ajs:Ajs_0622 rare lipoprotein A; rare lipoprotein A complement(6581769..6582680) Delftia acidovorans SPH-1 5751537 YP_001566930.1 CDS Daci_5917 NC_010002.1 6582759 6583586 R KEGG: ajs:Ajs_0620 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(6582759..6583586) Delftia acidovorans SPH-1 5751538 YP_001566931.1 CDS Daci_5918 NC_010002.1 6583609 6584811 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(6583609..6584811) Delftia acidovorans SPH-1 5751539 YP_001566932.1 CDS Daci_5919 NC_010002.1 6584969 6586399 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(6584969..6586399) Delftia acidovorans SPH-1 5751540 YP_001566933.1 CDS Daci_5920 NC_010002.1 6586562 6587305 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_4569 KDP operon transcriptional regulatory protein KdpE; two component transcriptional regulator complement(6586562..6587305) Delftia acidovorans SPH-1 5751541 YP_001566934.1 CDS Daci_5921 NC_010002.1 6587332 6590046 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: pfl:PFL_4570 sensor histidine kinase KdpD; osmosensitive K+ channel signal transduction histidine kinase complement(6587332..6590046) Delftia acidovorans SPH-1 5751542 YP_001566935.1 CDS Daci_5922 NC_010002.1 6590081 6590944 R PFAM: conserved hypothetical protein; KEGG: mms:mma_0168 hypothetical protein; hypothetical protein complement(6590081..6590944) Delftia acidovorans SPH-1 5751543 YP_001566936.1 CDS Daci_5923 NC_010002.1 6591028 6593112 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pfl:PFL_4571 K+-transporting ATPase, B subunit; K+-transporting ATPase subunit B complement(6591028..6593112) Delftia acidovorans SPH-1 5751544 YP_001566937.1 CDS Daci_5924 NC_010002.1 6593116 6593850 R KEGG: pfl:PFL_4572 K+-transporting ATPase, C subunit; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(6593116..6593850) Delftia acidovorans SPH-1 5751545 YP_001566938.1 CDS Daci_5925 NC_010002.1 6593929 6595635 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(6593929..6595635) Delftia acidovorans SPH-1 5751546 YP_001566939.1 CDS prfC NC_010002.1 6596065 6597762 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 6596065..6597762 Delftia acidovorans SPH-1 5751547 YP_001566940.1 CDS Daci_5927 NC_010002.1 6597793 6599784 D KEGG: aav:Aave_4066 hypothetical protein; hypothetical protein 6597793..6599784 Delftia acidovorans SPH-1 5751548 YP_001566941.1 CDS Daci_5928 NC_010002.1 6599781 6600848 D KEGG: aav:Aave_4063 hypothetical protein; hypothetical protein 6599781..6600848 Delftia acidovorans SPH-1 5751549 YP_001566942.1 CDS Daci_5929 NC_010002.1 6601179 6601526 D KEGG: aav:Aave_4064 hypothetical protein; hypothetical protein 6601179..6601526 Delftia acidovorans SPH-1 5751550 YP_001566943.1 CDS Daci_5930 NC_010002.1 6601536 6602495 D PFAM: glycosyl transferase family 2; KEGG: aav:Aave_4065 glycosyl transferase, family 2; glycosyl transferase family protein 6601536..6602495 Delftia acidovorans SPH-1 5751551 YP_001566944.1 CDS Daci_5931 NC_010002.1 6602547 6604421 D KEGG: vei:Veis_0689 hypothetical protein; hypothetical protein 6602547..6604421 Delftia acidovorans SPH-1 5751552 YP_001566945.1 CDS Daci_5932 NC_010002.1 6604508 6605305 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ajs:Ajs_0616 HAD-superfamily hydrolase, subfamily IIB; HAD family hydrolase 6604508..6605305 Delftia acidovorans SPH-1 5751553 YP_001566946.1 CDS Daci_5933 NC_010002.1 6605949 6606536 D PFAM: Fimbrial protein; KEGG: reu:Reut_A1694 fimbrial protein; fimbrial protein 6605949..6606536 Delftia acidovorans SPH-1 5751554 YP_001566947.1 CDS Daci_5934 NC_010002.1 6606650 6607411 D PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone; pili assembly chaperone 6606650..6607411 Delftia acidovorans SPH-1 5751555 YP_001566948.1 CDS Daci_5935 NC_010002.1 6607614 6610736 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 6607614..6610736 Delftia acidovorans SPH-1 5751556 YP_001566949.1 CDS Daci_5936 NC_010002.1 6611543 6612097 D PFAM: Fimbrial protein; KEGG: ent:Ent638_0987 fimbrial protein; fimbrial protein 6611543..6612097 Delftia acidovorans SPH-1 5751557 YP_001566950.1 CDS Daci_5937 NC_010002.1 6612202 6612984 D PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone; pili assembly chaperone 6612202..6612984 Delftia acidovorans SPH-1 5751558 YP_001566951.1 CDS Daci_5938 NC_010002.1 6613099 6615990 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_4024 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 6613099..6615990 Delftia acidovorans SPH-1 5751559 YP_001566952.1 CDS Daci_5939 NC_010002.1 6616106 6616894 D hypothetical protein 6616106..6616894 Delftia acidovorans SPH-1 5751560 YP_001566953.1 CDS Daci_5940 NC_010002.1 6617045 6618052 D PFAM: Fimbrial protein; KEGG: spe:Spro_2875 fimbrial protein; fimbrial protein 6617045..6618052 Delftia acidovorans SPH-1 5751561 YP_001566954.1 CDS putA NC_010002.1 6618224 6622261 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 6618224..6622261 Delftia acidovorans SPH-1 5751562 YP_001566955.1 CDS Daci_5942 NC_010002.1 6622341 6623843 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: ajs:Ajs_4063 sodium/proline symporter; sodium/proline symporter 6622341..6623843 Delftia acidovorans SPH-1 5751563 YP_001566956.1 CDS Daci_5943 NC_010002.1 6624141 6625127 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 6624141..6625127 Delftia acidovorans SPH-1 5751564 YP_001566957.1 CDS Daci_5944 NC_010002.1 6625275 6625790 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aav:Aave_3446 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 6625275..6625790 Delftia acidovorans SPH-1 5751565 YP_001566958.1 CDS Daci_5945 NC_010002.1 6625940 6627226 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: aav:Aave_3445 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 6625940..6627226 Delftia acidovorans SPH-1 5751566 YP_001566959.1 CDS Daci_5946 NC_010002.1 6627264 6628064 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_B0696 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(6627264..6628064) Delftia acidovorans SPH-1 5751567 YP_001566960.1 CDS Daci_5947 NC_010002.1 6628230 6629882 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_4282 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 6628230..6629882 Delftia acidovorans SPH-1 5751568 YP_001566961.1 CDS Daci_5948 NC_010002.1 6629931 6631259 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: vei:Veis_4283 major facilitator superfamily MFS_1; major facilitator transporter 6629931..6631259 Delftia acidovorans SPH-1 5751569 YP_001566962.1 CDS Daci_5949 NC_010002.1 6631440 6632300 D KEGG: aav:Aave_0186 hypothetical protein; hypothetical protein 6631440..6632300 Delftia acidovorans SPH-1 5751570 YP_001566963.1 CDS Daci_5950 NC_010002.1 6632323 6633288 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4251 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6632323..6633288) Delftia acidovorans SPH-1 5751571 YP_001566964.1 CDS Daci_5951 NC_010002.1 6633418 6634596 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4250 major facilitator superfamily MFS_1; major facilitator transporter 6633418..6634596 Delftia acidovorans SPH-1 5751572 YP_001566965.1 CDS Daci_5952 NC_010002.1 6634600 6640554 R KEGG: aav:Aave_4341 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A complement(6634600..6640554) Delftia acidovorans SPH-1 5751573 YP_001566966.1 CDS Daci_5953 NC_010002.1 6640733 6640852 R hypothetical protein complement(6640733..6640852) Delftia acidovorans SPH-1 5751574 YP_001566967.1 CDS Daci_5954 NC_010002.1 6640990 6641973 R KEGG: ajs:Ajs_3751 porin, gram-negative type; porin complement(6640990..6641973) Delftia acidovorans SPH-1 5751575 YP_001566968.1 CDS Daci_5955 NC_010002.1 6642379 6644061 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_4345 major facilitator superfamily MFS_1; general substrate transporter complement(6642379..6644061) Delftia acidovorans SPH-1 5751576 YP_001566969.1 CDS Daci_5956 NC_010002.1 6644365 6644673 D PFAM: protein of unknown function DUF485; KEGG: bur:Bcep18194_B1981 protein of unknown function DUF485; hypothetical protein 6644365..6644673 Delftia acidovorans SPH-1 5751577 YP_001566970.1 CDS Daci_5957 NC_010002.1 6644670 6646403 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pnu:Pnuc_0535 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter 6644670..6646403 Delftia acidovorans SPH-1 5751578 YP_001566971.1 CDS Daci_5958 NC_010002.1 6646621 6647256 D PFAM: PEBP family protein; KEGG: aav:Aave_4694 PEBP family protein; PEBP family protein 6646621..6647256 Delftia acidovorans SPH-1 5751579 YP_001566972.1 CDS Daci_5959 NC_010002.1 6647278 6647916 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(6647278..6647916) Delftia acidovorans SPH-1 5751580 YP_001566973.1 CDS Daci_5960 NC_010002.1 6647928 6649781 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein; hypothetical protein complement(6647928..6649781) Delftia acidovorans SPH-1 5751581 YP_001566974.1 CDS Daci_5961 NC_010002.1 6649782 6650417 R PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_3753 DsbA oxidoreductase; DSBA oxidoreductase complement(6649782..6650417) Delftia acidovorans SPH-1 5751582 YP_001566975.1 CDS Daci_5962 NC_010002.1 6650441 6650686 R PFAM: protein of unknown function DUF1289; KEGG: ajs:Ajs_3754 protein of unknown function DUF1289; hypothetical protein complement(6650441..6650686) Delftia acidovorans SPH-1 5751583 YP_001566976.1 CDS Daci_5963 NC_010002.1 6650683 6651186 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(6650683..6651186) Delftia acidovorans SPH-1 5751584 YP_001566977.1 CDS Daci_5964 NC_010002.1 6651189 6652130 R PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(6651189..6652130) Delftia acidovorans SPH-1 5751585 YP_001566978.1 CDS Daci_5965 NC_010002.1 6652240 6653148 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB2439 probable LysR-family transcriptional regulator; LysR family transcriptional regulator complement(6652240..6653148) Delftia acidovorans SPH-1 5751586 YP_001566979.1 CDS Daci_5966 NC_010002.1 6653240 6654202 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bbr:BB2438 probable 3-hydroxybutyryl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 6653240..6654202 Delftia acidovorans SPH-1 5751587 YP_001566980.1 CDS Daci_5967 NC_010002.1 6654199 6655053 D PFAM: protein of unknown function DUF849; KEGG: vei:Veis_0513 protein of unknown function DUF849; hypothetical protein 6654199..6655053 Delftia acidovorans SPH-1 5751588 YP_001566981.1 CDS Daci_5968 NC_010002.1 6655162 6656196 D PFAM: conserved hypothetical protein; KEGG: bbr:BB1095 hypothetical protein; hypothetical protein 6655162..6656196 Delftia acidovorans SPH-1 5751589 YP_001566982.1 CDS Daci_5969 NC_010002.1 6656206 6657126 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_3758 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(6656206..6657126) Delftia acidovorans SPH-1 5751590 YP_001566983.1 CDS Daci_5970 NC_010002.1 6657197 6659215 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_3759 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L complement(6657197..6659215) Delftia acidovorans SPH-1 5751591 YP_001566984.1 CDS Daci_5971 NC_010002.1 6659267 6660016 R KEGG: ajs:Ajs_3760 putative transmembrane protein; putative transmembrane protein complement(6659267..6660016) Delftia acidovorans SPH-1 5751592 YP_001566985.1 CDS Daci_5972 NC_010002.1 6660083 6660868 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(6660083..6660868) Delftia acidovorans SPH-1 5751593 YP_001566986.1 CDS Daci_5973 NC_010002.1 6660903 6662510 R PFAM: carboxyl transferase; KEGG: ajs:Ajs_3763 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(6660903..6662510) Delftia acidovorans SPH-1 5751594 YP_001566987.1 CDS Daci_5974 NC_010002.1 6662603 6664336 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bxe:Bxe_B1516 Na+/H+ antiporter, CPA1 family; Na+/H+ antiporter 6662603..6664336 Delftia acidovorans SPH-1 5751595 YP_001566988.1 CDS Daci_5975 NC_010002.1 6664381 6666099 R activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein complement(6664381..6666099) Delftia acidovorans SPH-1 5751596 YP_001566989.1 CDS Daci_5976 NC_010002.1 6666338 6667312 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pna:Pnap_0469 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 6666338..6667312 Delftia acidovorans SPH-1 5751597 YP_001566990.1 CDS Daci_5977 NC_010002.1 6667388 6668053 D PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3767 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 6667388..6668053 Delftia acidovorans SPH-1 5751598 YP_001566991.1 CDS Daci_5978 NC_010002.1 6668091 6668783 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aav:Aave_4360 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase complement(6668091..6668783) Delftia acidovorans SPH-1 5751599 YP_001566992.1 CDS Daci_5979 NC_010002.1 6668883 6669935 R KEGG: aav:Aave_3538 hypothetical protein; hypothetical protein complement(6668883..6669935) Delftia acidovorans SPH-1 5751600 YP_001566993.1 CDS Daci_5980 NC_010002.1 6670123 6670860 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aav:Aave_2497 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 6670123..6670860 Delftia acidovorans SPH-1 5751601 YP_001566994.1 CDS Daci_5981 NC_010002.1 6670830 6672689 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4361 integral membrane sensor hybrid histidine kinase; histidine kinase complement(6670830..6672689) Delftia acidovorans SPH-1 5751602 YP_001566995.1 CDS Daci_5982 NC_010002.1 6672673 6673086 R KEGG: aav:Aave_4362 hypothetical protein; hypothetical protein complement(6672673..6673086) Delftia acidovorans SPH-1 5751603 YP_001566996.1 CDS Daci_5983 NC_010002.1 6673253 6673750 D KEGG: aav:Aave_4363 hypothetical protein; hypothetical protein 6673253..6673750 Delftia acidovorans SPH-1 5751604 YP_001566997.1 CDS Daci_5984 NC_010002.1 6673772 6674674 R PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: rfr:Rfer_2846 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(6673772..6674674) Delftia acidovorans SPH-1 5751605 YP_001566998.1 CDS Daci_5985 NC_010002.1 6674706 6675836 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(6674706..6675836) Delftia acidovorans SPH-1 5751606 YP_001566999.1 CDS Daci_5986 NC_010002.1 6675903 6676565 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3775 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(6675903..6676565) Delftia acidovorans SPH-1 5751607 YP_001567000.1 CDS Daci_5987 NC_010002.1 6676594 6677217 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: xau:Xaut_1318 pyridoxamine 5'-phosphate oxidase-related FMN-binding; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein complement(6676594..6677217) Delftia acidovorans SPH-1 5751608 YP_001567001.1 CDS Daci_5988 NC_010002.1 6677270 6678451 R KEGG: ajs:Ajs_3776 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(6677270..6678451) Delftia acidovorans SPH-1 5751609 YP_001567002.1 CDS aceK NC_010002.1 6678498 6680285 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(6678498..6680285) Delftia acidovorans SPH-1 5751610 YP_001567003.1 CDS Daci_5990 NC_010002.1 6680319 6680981 R PFAM: carbonic anhydrase; KEGG: ajs:Ajs_3778 carbonate dehydratase; carbonate dehydratase complement(6680319..6680981) Delftia acidovorans SPH-1 5751611 YP_001567004.1 CDS Daci_5991 NC_010002.1 6681038 6682225 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3779 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(6681038..6682225) Delftia acidovorans SPH-1 5751612 YP_001567005.1 CDS Daci_5992 NC_010002.1 6682269 6682727 R PFAM: thioesterase superfamily protein; KEGG: bov:BOV_A0326 hypothetical protein; thioesterase superfamily protein complement(6682269..6682727) Delftia acidovorans SPH-1 5751613 YP_001567006.1 CDS Daci_5993 NC_010002.1 6682764 6683186 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ajs:Ajs_3780 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(6682764..6683186) Delftia acidovorans SPH-1 5751614 YP_001567007.1 CDS Daci_5994 NC_010002.1 6694867 6695817 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(6694867..6695817) Delftia acidovorans SPH-1 5751625 YP_001567008.1 CDS Daci_5995 NC_010002.1 6695898 6697079 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: ajs:Ajs_3908 benzoate transporter; benzoate transporter complement(6695898..6697079) Delftia acidovorans SPH-1 5751626 YP_001567009.1 CDS Daci_5996 NC_010002.1 6697130 6699013 R PFAM: K potassium transporter; KEGG: aav:Aave_4541 K+ potassium transporter; K potassium transporter complement(6697130..6699013) Delftia acidovorans SPH-1 5751627 YP_001567010.1 CDS Daci_5997 NC_010002.1 6699096 6700391 R TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: ajs:Ajs_3910 glutamate--cysteine ligase; glutamate--cysteine ligase complement(6699096..6700391) Delftia acidovorans SPH-1 5751628 YP_001567011.1 CDS Daci_5998 NC_010002.1 6700473 6701939 R PFAM: cation transporter; KEGG: ajs:Ajs_3911 cation transporter; cation transporter complement(6700473..6701939) Delftia acidovorans SPH-1 5751629 YP_001567012.1 CDS trkA NC_010002.1 6701950 6703407 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(6701950..6703407) Delftia acidovorans SPH-1 5751630 YP_001567013.1 CDS proA NC_010002.1 6703497 6704777 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(6703497..6704777) Delftia acidovorans SPH-1 5751631 YP_001567014.1 CDS holA NC_010002.1 6705279 6706331 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(6705279..6706331) Delftia acidovorans SPH-1 5751632 YP_001567015.1 CDS Daci_6002 NC_010002.1 6706337 6706843 R PFAM: Rare lipoprotein B; KEGG: ajs:Ajs_3916 rare lipoprotein B; rare lipoprotein B complement(6706337..6706843) Delftia acidovorans SPH-1 5751633 YP_001567016.1 CDS leuS NC_010002.1 6706888 6709623 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(6706888..6709623) Delftia acidovorans SPH-1 5751634 YP_001567017.1 CDS Daci_6004 NC_010002.1 6709947 6711200 D PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 6709947..6711200 Delftia acidovorans SPH-1 5751635 YP_001567018.1 CDS Daci_6005 NC_010002.1 6711228 6711707 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_4551 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(6711228..6711707) Delftia acidovorans SPH-1 5751636 YP_001567019.1 CDS Daci_6006 NC_010002.1 6711732 6712466 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3921 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(6711732..6712466) Delftia acidovorans SPH-1 5751637 YP_001567020.1 CDS Daci_6007 NC_010002.1 6712531 6713367 R PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(6712531..6713367) Delftia acidovorans SPH-1 5751638 YP_001567021.1 CDS Daci_6008 NC_010002.1 6713492 6714073 R PFAM: SmpA/OmlA domain protein; KEGG: aav:Aave_4554 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein complement(6713492..6714073) Delftia acidovorans SPH-1 5751639 YP_001567022.1 CDS Daci_6009 NC_010002.1 6714156 6714623 D PFAM: ferric-uptake regulator; KEGG: ajs:Ajs_3924 ferric uptake regulator, Fur family; ferric uptake regulator family protein 6714156..6714623 Delftia acidovorans SPH-1 5751640 YP_001567023.1 CDS Daci_6010 NC_010002.1 6714743 6716344 D PFAM: Protein of unknown function DUF1800; KEGG: aav:Aave_2282 hypothetical protein; hypothetical protein 6714743..6716344 Delftia acidovorans SPH-1 5751641 YP_001567024.1 CDS Daci_6011 NC_010002.1 6716362 6717576 D PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_2281 protein of unknown function DUF1501; hypothetical protein 6716362..6717576 Delftia acidovorans SPH-1 5751642 YP_001567025.1 CDS Daci_6012 NC_010002.1 6717585 6718526 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor complement(6717585..6718526) Delftia acidovorans SPH-1 5751643 YP_001567026.1 CDS Daci_6013 NC_010002.1 6718597 6719097 R PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_4074 NUDIX hydrolase; NUDIX hydrolase complement(6718597..6719097) Delftia acidovorans SPH-1 5751644 YP_001567027.1 CDS Daci_6014 NC_010002.1 6719186 6719764 R PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_4076 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(6719186..6719764) Delftia acidovorans SPH-1 5751645 YP_001567028.1 CDS Daci_6015 NC_010002.1 6719805 6720806 R PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: maq:Maqu_3676 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(6719805..6720806) Delftia acidovorans SPH-1 5751646 YP_001567029.1 CDS Daci_6016 NC_010002.1 6720803 6721399 R PFAM: Hpt domain protein; KEGG: cvi:CV_1190 probable sensor/response regulator hybrid; Hpt protein complement(6720803..6721399) Delftia acidovorans SPH-1 5751647 YP_001567030.1 CDS Daci_6017 NC_010002.1 6721439 6724573 R KEGG: maq:Maqu_3675 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(6721439..6724573) Delftia acidovorans SPH-1 5751648 YP_001567031.1 CDS Daci_6018 NC_010002.1 6724685 6724981 D KEGG: ajs:Ajs_4100 hypothetical protein; hypothetical protein 6724685..6724981 Delftia acidovorans SPH-1 5751649 YP_001567032.1 CDS Daci_6019 NC_010002.1 6725403 6726371 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4102 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6725403..6726371) Delftia acidovorans SPH-1 5751650 YP_001567033.1 CDS Daci_6020 NC_010002.1 6726455 6727975 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 6726455..6727975 Delftia acidovorans SPH-1 5751651 YP_001567034.1 CDS Daci_6021 NC_010002.1 6728055 6729071 R PFAM: conserved hypothetical protein; KEGG: reu:Reut_B5589 hypothetical protein; hypothetical protein complement(6728055..6729071) Delftia acidovorans SPH-1 5751652 YP_001567035.1 CDS Daci_6022 NC_010002.1 6729184 6730200 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aav:Aave_4749 GntR domain protein; GntR family transcriptional regulator complement(6729184..6730200) Delftia acidovorans SPH-1 5751653 YP_001567036.1 CDS Daci_6023 NC_010002.1 6730445 6731650 D KEGG: aav:Aave_4750 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; branched chain amino acid ABC transporter periplasmic ligand-binding protein 6730445..6731650 Delftia acidovorans SPH-1 5751654 YP_001567037.1 CDS Daci_6024 NC_010002.1 6731847 6732707 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2565 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator 6731847..6732707 Delftia acidovorans SPH-1 5751655 YP_001567038.1 CDS Daci_6025 NC_010002.1 6732704 6733705 D PFAM: inner-membrane translocator; KEGG: aav:Aave_4752 inner-membrane translocator; inner-membrane translocator 6732704..6733705 Delftia acidovorans SPH-1 5751656 YP_001567039.1 CDS Daci_6026 NC_010002.1 6733702 6734481 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4753 ABC transporter-related protein; ABC transporter-like protein 6733702..6734481 Delftia acidovorans SPH-1 5751657 YP_001567040.1 CDS Daci_6027 NC_010002.1 6734478 6735188 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4754 ABC transporter-related protein; ABC transporter-like protein 6734478..6735188 Delftia acidovorans SPH-1 5751658 YP_001567041.1 CDS Daci_6028 NC_010002.1 6735221 6736516 D KEGG: aav:Aave_4755 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; amidase 6735221..6736516 Delftia acidovorans SPH-1 5751659 YP_001567042.1 CDS Daci_6029 NC_010002.1 6736513 6737979 D PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: aav:Aave_4756 MlrC domain protein; MlrC domain-containing protein 6736513..6737979 Delftia acidovorans SPH-1 5751660 YP_001567043.1 CDS Daci_6030 NC_010002.1 6738188 6740497 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 6738188..6740497 Delftia acidovorans SPH-1 5751661 YP_001567044.1 CDS Daci_6031 NC_010002.1 6740815 6741234 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: aav:Aave_4760 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 6740815..6741234 Delftia acidovorans SPH-1 5751662 YP_001567045.1 CDS Daci_6032 NC_010002.1 6741231 6741809 D KEGG: ajs:Ajs_4108 hypothetical protein; hypothetical protein 6741231..6741809 Delftia acidovorans SPH-1 5751663 YP_001567046.1 CDS ksgA NC_010002.1 6741890 6742696 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(6741890..6742696) Delftia acidovorans SPH-1 5751664 YP_001567047.1 CDS Daci_6034 NC_010002.1 6742734 6744161 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: ajs:Ajs_4111 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein complement(6742734..6744161) Delftia acidovorans SPH-1 5751665 YP_001567048.1 CDS Daci_6035 NC_010002.1 6744203 6746527 R PFAM: Organic solvent tolerance protein; KEGG: aav:Aave_4764 organic solvent tolerance protein; organic solvent tolerance protein complement(6744203..6746527) Delftia acidovorans SPH-1 5751666 YP_001567049.1 CDS Daci_6036 NC_010002.1 6746545 6747828 D PFAM: aminoglycoside phosphotransferase; KEGG: aav:Aave_4765 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 6746545..6747828 Delftia acidovorans SPH-1 5751667 YP_001567050.1 CDS Daci_6037 NC_010002.1 6747842 6748594 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 6747842..6748594 Delftia acidovorans SPH-1 5751668 YP_001567051.1 CDS Daci_6038 NC_010002.1 6748581 6749465 R PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_4120 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(6748581..6749465) Delftia acidovorans SPH-1 5751669 YP_001567052.1 CDS Daci_6039 NC_010002.1 6749465 6750991 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_4771 peptidase M20; peptidase M20 complement(6749465..6750991) Delftia acidovorans SPH-1 5751670 YP_001567053.1 CDS Daci_6040 NC_010002.1 6751096 6751482 D PFAM: regulatory protein MerR; KEGG: azo:azo1478 probable MerR-family transcriptional regulator; MerR family transcriptional regulator 6751096..6751482 Delftia acidovorans SPH-1 5751671 YP_001567054.1 CDS Daci_6041 NC_010002.1 6751535 6752185 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ppf:Pput_2966 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase 6751535..6752185 Delftia acidovorans SPH-1 5751672 YP_001567055.1 CDS Daci_6042 NC_010002.1 6752169 6753389 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pna:Pnap_2092 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(6752169..6753389) Delftia acidovorans SPH-1 5751673 YP_001567056.1 CDS Daci_6043 NC_010002.1 6753405 6753989 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4777 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW complement(6753405..6753989) Delftia acidovorans SPH-1 5751674 YP_001567057.1 CDS metX NC_010002.1 6753986 6755134 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(6753986..6755134) Delftia acidovorans SPH-1 5751675 YP_001567058.1 CDS Daci_6045 NC_010002.1 6755241 6755855 R PFAM: protein of unknown function UPF0016; KEGG: aav:Aave_4779 protein of unknown function UPF0016; hypothetical protein complement(6755241..6755855) Delftia acidovorans SPH-1 5751676 YP_001567059.1 CDS Daci_6046 NC_010002.1 6756313 6756687 D PFAM: RNP-1 like RNA-binding protein; KEGG: vei:Veis_0149 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 6756313..6756687 Delftia acidovorans SPH-1 5751677 YP_001567060.1 CDS Daci_6047 NC_010002.1 6756943 6757473 D PFAM: RNP-1 like RNA-binding protein; KEGG: aav:Aave_4781 RNP-1-like RNA-binding protein; RNP-1 like RNA-binding protein 6756943..6757473 Delftia acidovorans SPH-1 5751678 YP_001567061.1 CDS Daci_6048 NC_010002.1 6757578 6758378 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_4129 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(6757578..6758378) Delftia acidovorans SPH-1 5751679 YP_001567062.1 CDS Daci_6049 NC_010002.1 6758421 6759038 R PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 protein of unknown function DUF1239; hypothetical protein complement(6758421..6759038) Delftia acidovorans SPH-1 5751680 YP_001567063.1 CDS Daci_6050 NC_010002.1 6759035 6759595 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: ajs:Ajs_4131 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(6759035..6759595) Delftia acidovorans SPH-1 5751351 YP_001567064.1 CDS Daci_6051 NC_010002.1 6759595 6760596 R KEGG: aav:Aave_4785 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(6759595..6760596) Delftia acidovorans SPH-1 5751688 YP_001567065.1 CDS Daci_6052 NC_010002.1 6760694 6761251 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 6760694..6761251 Delftia acidovorans SPH-1 5751689 YP_001567066.1 CDS Daci_6053 NC_010002.1 6761269 6762033 R KEGG: ajs:Ajs_4136 hypothetical protein; hypothetical protein complement(6761269..6762033) Delftia acidovorans SPH-1 5751681 YP_001567067.1 CDS Daci_6054 NC_010002.1 6762198 6762677 R PFAM: cyclic nucleotide-binding; KEGG: aav:Aave_4790 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(6762198..6762677) Delftia acidovorans SPH-1 5751682 YP_001567068.1 CDS trmE NC_010002.1 6762896 6764317 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(6762896..6764317) Delftia acidovorans SPH-1 5751683 YP_001567069.1 CDS Daci_6056 NC_010002.1 6764417 6766129 R PFAM: 60 kDa inner membrane insertion protein; KEGG: ajs:Ajs_4140 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(6764417..6766129) Delftia acidovorans SPH-1 5751684 YP_001567070.1 CDS Daci_6057 NC_010002.1 6766126 6766416 R PFAM: protein of unknown function DUF37; KEGG: aav:Aave_4794 protein of unknown function DUF37; hypothetical protein complement(6766126..6766416) Delftia acidovorans SPH-1 5751685 YP_001567071.1 CDS Daci_6058 NC_010002.1 6766413 6766922 R KEGG: ajs:Ajs_4142 hypothetical protein; hypothetical protein complement(6766413..6766922) Delftia acidovorans SPH-1 5751686 YP_001567072.1 CDS rpmH NC_010002.1 6766981 6767115 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(6766981..6767115) Delftia acidovorans SPH-1 5751687 Daci_R0001 tRNA Daci_R0001 NC_010002.1 354272 354348 R tRNA-Met complement(354272..354348) Delftia acidovorans SPH-1 5745850 Daci_R0002 tRNA Daci_R0002 NC_010002.1 533898 533973 D tRNA-Arg 533898..533973 Delftia acidovorans SPH-1 5746040 Daci_R0003 tRNA Daci_R0003 NC_010002.1 534064 534149 D tRNA-Tyr 534064..534149 Delftia acidovorans SPH-1 5746041 Daci_R0004 tRNA Daci_R0004 NC_010002.1 534205 534278 D tRNA-Gly 534205..534278 Delftia acidovorans SPH-1 5746042 Daci_R0005 tRNA Daci_R0005 NC_010002.1 534322 534396 D tRNA-Thr 534322..534396 Delftia acidovorans SPH-1 5746043 Daci_R0006 tRNA Daci_R0006 NC_010002.1 535675 535750 D tRNA-Trp 535675..535750 Delftia acidovorans SPH-1 5746045 Daci_R0007 tRNA Daci_R0007 NC_010002.1 553781 553856 D tRNA-Phe 553781..553856 Delftia acidovorans SPH-1 5746059 Daci_R0009 tRNA Daci_R0009 NC_010002.1 725418 725494 D tRNA-Ile 725418..725494 Delftia acidovorans SPH-1 5746205 Daci_R0010 tRNA Daci_R0010 NC_010002.1 725525 725600 D tRNA-Ala 725525..725600 Delftia acidovorans SPH-1 5746206 Daci_R0014 tRNA Daci_R0014 NC_010002.1 731064 731140 D tRNA-Ile 731064..731140 Delftia acidovorans SPH-1 5746210 Daci_R0015 tRNA Daci_R0015 NC_010002.1 731171 731246 D tRNA-Ala 731171..731246 Delftia acidovorans SPH-1 5746211 Daci_R0018 tRNA Daci_R0018 NC_010002.1 750149 750222 D tRNA-OTHER 750149..750222 Delftia acidovorans SPH-1 5746229 Daci_R0019 tRNA Daci_R0019 NC_010002.1 1159225 1159301 D tRNA-Met 1159225..1159301 Delftia acidovorans SPH-1 5746603 Daci_R0021 tRNA Daci_R0021 NC_010002.1 1716324 1716400 R tRNA-Met complement(1716324..1716400) Delftia acidovorans SPH-1 5747085 Daci_R0022 tRNA Daci_R0022 NC_010002.1 1846282 1846356 R tRNA-Arg complement(1846282..1846356) Delftia acidovorans SPH-1 5747214 Daci_R0023 tRNA Daci_R0023 NC_010002.1 2110826 2110915 D tRNA-Ser 2110826..2110915 Delftia acidovorans SPH-1 5747466 Daci_R0024 tRNA Daci_R0024 NC_010002.1 2171146 2171222 D tRNA-Gln 2171146..2171222 Delftia acidovorans SPH-1 5747545 Daci_R0025 tRNA Daci_R0025 NC_010002.1 2214170 2214246 D tRNA-Arg 2214170..2214246 Delftia acidovorans SPH-1 5747582 Daci_R0026 tRNA Daci_R0026 NC_010002.1 2214416 2214492 D tRNA-Arg 2214416..2214492 Delftia acidovorans SPH-1 5747583 Daci_R0027 tRNA Daci_R0027 NC_010002.1 2308412 2308499 R tRNA-Ser complement(2308412..2308499) Delftia acidovorans SPH-1 5747667 Daci_R0028 tRNA Daci_R0028 NC_010002.1 2425753 2425837 R tRNA-Leu complement(2425753..2425837) Delftia acidovorans SPH-1 5747774 Daci_R0029 tRNA Daci_R0029 NC_010002.1 2775619 2775711 D tRNA-Ser 2775619..2775711 Delftia acidovorans SPH-1 5748075 Daci_R0031 tRNA Daci_R0031 NC_010002.1 2777780 2777856 D tRNA-Ile 2777780..2777856 Delftia acidovorans SPH-1 5748077 Daci_R0032 tRNA Daci_R0032 NC_010002.1 2777887 2777962 D tRNA-Ala 2777887..2777962 Delftia acidovorans SPH-1 5748078 Daci_R0035 tRNA Daci_R0035 NC_010002.1 2851900 2851986 D tRNA-Leu 2851900..2851986 Delftia acidovorans SPH-1 5748145 Daci_R0036 tRNA Daci_R0036 NC_010002.1 2912398 2912473 D tRNA-Gly 2912398..2912473 Delftia acidovorans SPH-1 5748218 Daci_R0037 tRNA Daci_R0037 NC_010002.1 2912541 2912616 D tRNA-Gly 2912541..2912616 Delftia acidovorans SPH-1 5748219 Daci_R0038 tRNA Daci_R0038 NC_010002.1 2912676 2912751 D tRNA-Gly 2912676..2912751 Delftia acidovorans SPH-1 5748220 Daci_R0039 tRNA Daci_R0039 NC_010002.1 2912795 2912868 D tRNA-Cys 2912795..2912868 Delftia acidovorans SPH-1 5748221 Daci_R0040 tRNA Daci_R0040 NC_010002.1 2914166 2914241 D tRNA-Gly 2914166..2914241 Delftia acidovorans SPH-1 5748223 Daci_R0041 tRNA Daci_R0041 NC_010002.1 2914340 2914430 D tRNA-Leu 2914340..2914430 Delftia acidovorans SPH-1 5748224 Daci_R0042 tRNA Daci_R0042 NC_010002.1 3133854 3133930 D tRNA-Val 3133854..3133930 Delftia acidovorans SPH-1 5748433 Daci_R0043 tRNA Daci_R0043 NC_010002.1 3143224 3143300 D tRNA-Val 3143224..3143300 Delftia acidovorans SPH-1 5748443 Daci_R0044 tRNA Daci_R0044 NC_010002.1 3158555 3158630 D tRNA-Val 3158555..3158630 Delftia acidovorans SPH-1 5748458 Daci_R0045 tRNA Daci_R0045 NC_010002.1 3160661 3160736 D tRNA-His 3160661..3160736 Delftia acidovorans SPH-1 5748460 Daci_R0046 tRNA Daci_R0046 NC_010002.1 3160993 3161068 D tRNA-His 3160993..3161068 Delftia acidovorans SPH-1 5748461 Daci_R0047 tRNA Daci_R0047 NC_010002.1 3182596 3182672 R tRNA-Arg complement(3182596..3182672) Delftia acidovorans SPH-1 5748482 Daci_R0048 tRNA Daci_R0048 NC_010002.1 3240865 3240954 R tRNA-Ser complement(3240865..3240954) Delftia acidovorans SPH-1 5748528 Daci_R0049 tRNA Daci_R0049 NC_010002.1 3261067 3261156 R tRNA-Ser complement(3261067..3261156) Delftia acidovorans SPH-1 5748543 Daci_R0050 tRNA Daci_R0050 NC_010002.1 3568301 3568376 R tRNA-Thr complement(3568301..3568376) Delftia acidovorans SPH-1 5748847 Daci_R0051 tRNA Daci_R0051 NC_010002.1 3735167 3735242 D tRNA-Lys 3735167..3735242 Delftia acidovorans SPH-1 5748983 Daci_R0052 tRNA Daci_R0052 NC_010002.1 4397367 4397441 R tRNA-Val complement(4397367..4397441) Delftia acidovorans SPH-1 5749576 Daci_R0053 tRNA Daci_R0053 NC_010002.1 4397478 4397552 R tRNA-Val complement(4397478..4397552) Delftia acidovorans SPH-1 5749577 Daci_R0054 tRNA Daci_R0054 NC_010002.1 4397591 4397665 R tRNA-Val complement(4397591..4397665) Delftia acidovorans SPH-1 5749578 Daci_R0055 tRNA Daci_R0055 NC_010002.1 4397703 4397777 R tRNA-Val complement(4397703..4397777) Delftia acidovorans SPH-1 5749579 Daci_R0056 tRNA Daci_R0056 NC_010002.1 4531404 4531477 D tRNA-Gly 4531404..4531477 Delftia acidovorans SPH-1 5749726 Daci_R0057 tRNA Daci_R0057 NC_010002.1 5065209 5065285 R tRNA-Pro complement(5065209..5065285) Delftia acidovorans SPH-1 5750195 Daci_R0058 tRNA Daci_R0058 NC_010002.1 5069609 5069685 R tRNA-Pro complement(5069609..5069685) Delftia acidovorans SPH-1 5750198 Daci_R0059 tRNA Daci_R0059 NC_010002.1 5118753 5118829 D tRNA-Pro 5118753..5118829 Delftia acidovorans SPH-1 5750252 Daci_R0061 tRNA Daci_R0061 NC_010002.1 5254177 5254253 R tRNA-Asp complement(5254177..5254253) Delftia acidovorans SPH-1 5750354 Daci_R0062 tRNA Daci_R0062 NC_010002.1 5254298 5254373 R tRNA-Glu complement(5254298..5254373) Delftia acidovorans SPH-1 5750355 Daci_R0063 tRNA Daci_R0063 NC_010002.1 5254412 5254487 R tRNA-Ala complement(5254412..5254487) Delftia acidovorans SPH-1 5750356 Daci_R0064 tRNA Daci_R0064 NC_010002.1 5261652 5261728 R tRNA-Asp complement(5261652..5261728) Delftia acidovorans SPH-1 5750362 Daci_R0065 tRNA Daci_R0065 NC_010002.1 5261773 5261848 R tRNA-Glu complement(5261773..5261848) Delftia acidovorans SPH-1 5750363 Daci_R0066 tRNA Daci_R0066 NC_010002.1 5261886 5261961 R tRNA-Ala complement(5261886..5261961) Delftia acidovorans SPH-1 5750364 Daci_R0067 tRNA Daci_R0067 NC_010002.1 5261975 5262051 R tRNA-Asp complement(5261975..5262051) Delftia acidovorans SPH-1 5750365 Daci_R0068 tRNA Daci_R0068 NC_010002.1 5262096 5262171 R tRNA-Glu complement(5262096..5262171) Delftia acidovorans SPH-1 5750366 Daci_R0069 tRNA Daci_R0069 NC_010002.1 5262244 5262320 R tRNA-Asp complement(5262244..5262320) Delftia acidovorans SPH-1 5750367 Daci_R0070 tRNA Daci_R0070 NC_010002.1 5262365 5262440 R tRNA-Glu complement(5262365..5262440) Delftia acidovorans SPH-1 5750368 Daci_R0071 tRNA Daci_R0071 NC_010002.1 5262479 5262554 R tRNA-Ala complement(5262479..5262554) Delftia acidovorans SPH-1 5750369 Daci_R0072 tRNA Daci_R0072 NC_010002.1 5369204 5369279 D tRNA-Asn 5369204..5369279 Delftia acidovorans SPH-1 5750460 Daci_R0073 tRNA Daci_R0073 NC_010002.1 5369333 5369408 D tRNA-Asn 5369333..5369408 Delftia acidovorans SPH-1 5750461 Daci_R0074 tRNA Daci_R0074 NC_010002.1 5369454 5369529 D tRNA-Asn 5369454..5369529 Delftia acidovorans SPH-1 5750462 Daci_R0076 tRNA Daci_R0076 NC_010002.1 5476004 5476088 D tRNA-Leu 5476004..5476088 Delftia acidovorans SPH-1 5750559 Daci_R0077 tRNA Daci_R0077 NC_010002.1 5476248 5476332 D tRNA-Leu 5476248..5476332 Delftia acidovorans SPH-1 5750560 Daci_R0078 tRNA Daci_R0078 NC_010002.1 5476488 5476572 D tRNA-Leu 5476488..5476572 Delftia acidovorans SPH-1 5750561 Daci_R0079 tRNA Daci_R0079 NC_010002.1 5476727 5476811 D tRNA-Leu 5476727..5476811 Delftia acidovorans SPH-1 5750562 Daci_R0080 tRNA Daci_R0080 NC_010002.1 5746301 5746385 R tRNA-Leu complement(5746301..5746385) Delftia acidovorans SPH-1 5750792 Daci_R0081 tRNA Daci_R0081 NC_010002.1 5917916 5917991 D tRNA-Lys 5917916..5917991 Delftia acidovorans SPH-1 5750945 Daci_R0082 tRNA Daci_R0082 NC_010002.1 5918047 5918122 D tRNA-Lys 5918047..5918122 Delftia acidovorans SPH-1 5750946 Daci_R0083 tRNA Daci_R0083 NC_010002.1 5918169 5918244 D tRNA-Lys 5918169..5918244 Delftia acidovorans SPH-1 5750947 Daci_R0084 tRNA Daci_R0084 NC_010002.1 6015929 6016005 R tRNA-Arg complement(6015929..6016005) Delftia acidovorans SPH-1 5751034 Daci_R0085 tRNA Daci_R0085 NC_010002.1 6016183 6016261 R tRNA-Met complement(6016183..6016261) Delftia acidovorans SPH-1 5751035 Daci_R0086 tRNA Daci_R0086 NC_010002.1 6032574 6032650 D tRNA-Gln 6032574..6032650 Delftia acidovorans SPH-1 5751050 Daci_R0087 tRNA Daci_R0087 NC_010002.1 6091971 6092047 D tRNA-Pro 6091971..6092047 Delftia acidovorans SPH-1 5751106 Daci_R0088 tRNA Daci_R0088 NC_010002.1 6104337 6104412 R tRNA-Thr complement(6104337..6104412) Delftia acidovorans SPH-1 5751118 Daci_R0091 tRNA Daci_R0091 NC_010002.1 6686974 6687049 R tRNA-Ala complement(6686974..6687049) Delftia acidovorans SPH-1 5751617 Daci_R0092 tRNA Daci_R0092 NC_010002.1 6687080 6687156 R tRNA-Ile complement(6687080..6687156) Delftia acidovorans SPH-1 5751618 Daci_R0096 tRNA Daci_R0096 NC_010002.1 6692620 6692695 R tRNA-Ala complement(6692620..6692695) Delftia acidovorans SPH-1 5751622 Daci_R0097 tRNA Daci_R0097 NC_010002.1 6692726 6692802 R tRNA-Ile complement(6692726..6692802) Delftia acidovorans SPH-1 5751623 Daci_R0008 rRNA Daci_R0008 NC_010002.1 723807 725332 D 16S ribosomal RNA 723807..725332 Delftia acidovorans SPH-1 5746204 Daci_R0011 rRNA Daci_R0011 NC_010002.1 726001 728879 D 23S ribosomal RNA 726001..728879 Delftia acidovorans SPH-1 5746207 Daci_R0012 rRNA Daci_R0012 NC_010002.1 729002 729114 D 5S ribosomal RNA 729002..729114 Delftia acidovorans SPH-1 5746208 Daci_R0013 rRNA Daci_R0013 NC_010002.1 729453 730978 D 16S ribosomal RNA 729453..730978 Delftia acidovorans SPH-1 5746209 Daci_R0016 rRNA Daci_R0016 NC_010002.1 731647 734525 D 23S ribosomal RNA 731647..734525 Delftia acidovorans SPH-1 5746212 Daci_R0017 rRNA Daci_R0017 NC_010002.1 734648 734760 D 5S ribosomal RNA 734648..734760 Delftia acidovorans SPH-1 5746213 Daci_R0030 rRNA Daci_R0030 NC_010002.1 2776169 2777694 D 16S ribosomal RNA 2776169..2777694 Delftia acidovorans SPH-1 5748076 Daci_R0033 rRNA Daci_R0033 NC_010002.1 2778363 2781241 D 23S ribosomal RNA 2778363..2781241 Delftia acidovorans SPH-1 5748079 Daci_R0034 rRNA Daci_R0034 NC_010002.1 2781365 2781477 D 5S ribosomal RNA 2781365..2781477 Delftia acidovorans SPH-1 5748080 Daci_R0089 rRNA Daci_R0089 NC_010002.1 6683460 6683572 R 5S ribosomal RNA complement(6683460..6683572) Delftia acidovorans SPH-1 5751615 Daci_R0090 rRNA Daci_R0090 NC_010002.1 6683695 6686573 R 23S ribosomal RNA complement(6683695..6686573) Delftia acidovorans SPH-1 5751616 Daci_R0093 rRNA Daci_R0093 NC_010002.1 6687242 6688767 R 16S ribosomal RNA complement(6687242..6688767) Delftia acidovorans SPH-1 5751619 Daci_R0094 rRNA Daci_R0094 NC_010002.1 6689106 6689218 R 5S ribosomal RNA complement(6689106..6689218) Delftia acidovorans SPH-1 5751620 Daci_R0095 rRNA Daci_R0095 NC_010002.1 6689341 6692219 R 23S ribosomal RNA complement(6689341..6692219) Delftia acidovorans SPH-1 5751621 Daci_R0098 rRNA Daci_R0098 NC_010002.1 6692888 6694413 R 16S ribosomal RNA complement(6692888..6694413) Delftia acidovorans SPH-1 5751624