-- dump date 20240506_004050 -- class Genbank::Contig -- table contig_comment -- id comment NC_015388.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002629.1.REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: NetherlandsREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scaleREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and anREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate.REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude ElferinkREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10 Pseudo Genes (incomplete) :: 9 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10 Pseudo Genes (incomplete) :: 9 of 10 Pseudo Genes (internal stop) :: 1 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10 Pseudo Genes (incomplete) :: 9 of 10 Pseudo Genes (internal stop) :: 1 of 10 CRISPR Arrays :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10 Pseudo Genes (incomplete) :: 9 of 10 Pseudo Genes (internal stop) :: 1 of 10 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002629.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087663 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfobacca acetoxidans ASRB2, DSM 11109 collection_date :: Missing lat_lon :: 51.970 5.665 depth :: Missing alt_elev :: Missing country :: Netherlands environment :: Fresh water, Fresh water num_replicons :: 1 ref_biomaterial :: DSM 11109, ATCC 700848 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 10319454 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03015 Type Strain :: Yes Greengenes ID :: 10776 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. Isolation Comments :: isolated by S. J. W. H. Oude Elferink Cell Shape :: Oval-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/06/2023 01:02:55 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,947 CDSs (total) :: 2,893 Genes (coding) :: 2,883 CDSs (with protein) :: 2,883 Genes (RNA) :: 54 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 4 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 0 of 10 Pseudo Genes (incomplete) :: 9 of 10 Pseudo Genes (internal stop) :: 1 of 10 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length.