-- dump date 20140619_063019 -- class Genbank::CDS -- table cds_note -- id note YP_001527888.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; KEGG: sfu:Sfum_0001 chromosomal replication initiator protein DnaA YP_001527889.1 PFAM: FAD linked oxidase domain protein; KEGG: sfu:Sfum_0534 FAD linked oxidase domain protein YP_001527891.1 PFAM: inositol monophosphatase; KEGG: ppd:Ppro_0018 inositol monophosphatase YP_001527892.1 PFAM: GTP-binding protein HSR1-related; KEGG: sat:SYN_01762 GTPase YP_001527893.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: sat:SYN_00640 replicative DNA helicase YP_001527894.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001527895.1 KEGG: sat:SYN_00642 hypothetical membrane protein YP_001527896.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001527897.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001527898.1 KEGG: sat:SYN_03116 hypothetical protein YP_001527899.1 KEGG: sat:SYN_00931 integrin-like repeat protein YP_001527900.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: sfu:Sfum_1705 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001527901.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pin:Ping_1819 putative ribonuclease BN YP_001527902.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_0111 carboxymuconolactone decarboxylase YP_001527905.1 KEGG: drm:Dred_2488 protein of unknown function DUF1432 YP_001527906.1 PFAM: protein of unknown function DUF107; KEGG: bsu:BG11650 unknown YP_001527907.1 PFAM: protein of unknown function DUF107; KEGG: rba:RB7673 conserved hypothetical protein-putative periplasmatic serine protease YP_001527908.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dps:DP0805 similar to beta-phosphoglucomutase YP_001527909.1 KEGG: sfu:Sfum_3060 hypothetical protein YP_001527910.1 KEGG: sfu:Sfum_3061 hypothetical protein YP_001527911.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: nph:NP1002A hypothetical protein YP_001527912.1 KEGG: pth:PTH_1792 primosomal protein N' (replication factor Y) - superfamily II helicase; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001527913.1 KEGG: dps:DP1088 probable citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001527914.1 KEGG: gsu:GSU1874 hypothetical protein YP_001527915.1 PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_1732 beta-lactamase domain protein YP_001527916.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sat:SYN_01019 two-component response regulator YP_001527917.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: serine/threonine protein kinase; KEGG: pth:PTH_0142 hypothetical protein YP_001527918.1 PFAM: Mammalian cell entry related domain protein; KEGG: bba:Bd1770 ABC-type multidrug transport system substrate-binding protein YP_001527919.1 KEGG: lsl:LSL_1540 ABC transporter, ATP-binding protein YP_001527920.1 PFAM: protein of unknown function DUF140; KEGG: bba:Bd1768 ABC transporter permease protein YP_001527921.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: sat:SYN_01481 adenylate cyclase YP_001527922.1 TIGRFAM: SpoIID/LytB domain; PFAM: Tetratricopeptide TPR_2 repeat protein; Stage II sporulation D domain protein; KEGG: dde:Dde_1785 sporulation protein and related proteins-like YP_001527923.1 PFAM: protein of unknown function DUF400; KEGG: sat:SYN_02890 hypothetical protein YP_001527924.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_02887 hypothetical membrane protein YP_001527925.1 KEGG: sat:SYN_03044 putative periplasmic protein YP_001527926.1 PFAM: nitroreductase; KEGG: mmp:MMP0426 nitroreductase family YP_001527927.1 PFAM: AMP-dependent synthetase and ligase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: btk:BT9727_2709 probable crotonobetaine/carnitine-CoA ligase YP_001527928.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: tvo:TVN1120 acyl-CoA dehydrogenase YP_001527929.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001527930.1 PFAM: LVIVD repeat protein; KEGG: mma:MM_0391 hypothetical protein YP_001527931.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aeh:Mlg_2746 single-strand binding protein YP_001527932.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001527933.1 KEGG: sfu:Sfum_3079 hypothetical protein YP_001527934.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sat:SYN_02572 MoxR-like ATPase with AAA domain YP_001527935.1 KEGG: sat:SYN_02573 hypothetical cytosolic protein YP_001527936.1 PFAM: response regulator receiver; KEGG: pfl:PFL_3324 response regulator YP_001527937.1 TIGRFAM: Addiction module killer protein HI1419; PFAM: protein of unknown function DUF891; KEGG: dps:DP2055 hypothetical protein YP_001527938.1 TIGRFAM: Addiction module antidote protein HI1420; KEGG: mmw:Mmwyl1_1983 putative transcriptional regulator YP_001527941.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sfu:Sfum_2643 DEAD/DEAH box helicase domain protein YP_001527942.1 PFAM: protein of unknown function DUF980; KEGG: dps:DP1877 hypothetical protein YP_001527944.1 KEGG: pth:PTH_0660 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001527945.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rrs:RoseRS_4592 pseudouridine synthase YP_001527946.1 KEGG: gsu:GSU2049 amino-acid N-acetyltransferase / glutamate N-acetyltransferase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001527947.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: bth:BT_0342 hypothetical protein YP_001527948.1 PFAM: cobalamin B12-binding domain protein; KEGG: rsh:Rsph17029_0797 methionine synthase YP_001527949.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: mac:MA0859 hypothetical protein YP_001527950.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sat:SYN_02148 molybdopterin biosynthesis MoeA protein YP_001527954.1 PFAM: cyclic nucleotide-binding; KEGG: mgm:Mmc1_1803 cyclic nucleotide-binding protein YP_001527955.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sat:SYN_02776 tRNA(Ile)-lysidine synthetase YP_001527956.1 PFAM: GrpE protein; KEGG: pca:Pcar_0108 GrpE protein YP_001527957.1 KEGG: sat:SYN_01983 chaperone protein; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001527958.1 PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: sat:SYN_00084 multimeric flavodoxin YP_001527960.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sfu:Sfum_1702 succinyl-CoA synthetase, alpha subunit YP_001527961.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001527962.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: sfu:Sfum_0461 conserved carboxylase region YP_001527964.1 PFAM: carboxyl transferase; KEGG: sfu:Sfum_1223 carboxyl transferase YP_001527965.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rpd:RPD_1922 LAO/AO transport system ATPase YP_001527966.1 MDM; functions in conversion of succinate to propionate YP_001527967.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase YP_001527968.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001527969.1 KEGG: sat:SYN_00040 hypothetical membrane protein YP_001527970.1 PFAM: Queuosine biosynthesis protein; KEGG: pca:Pcar_1895 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001527971.1 KEGG: gsu:GSU2619 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001527972.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 thioredoxin-like proteins and domains-like YP_001527973.1 PFAM: ribosomal protein L21; KEGG: sfu:Sfum_3639 ribosomal protein L21 YP_001527974.1 involved in the peptidyltransferase reaction during translation YP_001527975.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: sfu:Sfum_3641 small GTP-binding protein YP_001527976.1 KEGG: sat:SYN_01350 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_001527977.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: pca:Pcar_2579 gamma-glutamyl phosphate reductase YP_001527978.1 KEGG: sat:SYN_02003 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_001527979.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sfu:Sfum_3646 iojap-like protein YP_001527980.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001527981.1 KEGG: ppd:Ppro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001527982.1 KEGG: sat:SYN_02049 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001527983.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001527984.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_0300 radical SAM domain protein YP_001527985.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sfu:Sfum_1609 ribonuclease, Rne/Rng family YP_001527986.1 PFAM: ribosomal protein L34; KEGG: pmy:Pmen_4623 ribosomal protein L34 YP_001527987.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sat:SYN_01012 ribonuclease P protein component YP_001527988.1 PFAM: protein of unknown function DUF37; KEGG: chy:CHY_0003 conserved hypothetical protein TIGR00278 YP_001527989.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: dps:DP0855 conserved hypothetical membrane protein YP_001527990.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain protein YP_001527991.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: pth:PTH_2917 predicted GTPase YP_001527992.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3774 hypothetical protein YP_001527993.1 KEGG: dde:Dde_3773 hypothetical protein YP_001527994.1 PFAM: ribosomal L11 methyltransferase; KEGG: ppd:Ppro_2959 ribosomal protein L11 methyltransferase YP_001527995.1 KEGG: dps:DP2274 hypothetical protein YP_001527996.1 KEGG: pca:Pcar_0493 hypothetical protein YP_001527997.1 KEGG: sfu:Sfum_3937 hypothetical protein YP_001527998.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: maq:Maqu_0076 RimK domain protein ATP-grasp YP_001527999.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bcz:BCZK2688 long-chain-fatty-acid--CoA ligase YP_001528000.1 PFAM: Thiolase; KEGG: rfr:Rfer_4205 thiolase YP_001528001.1 PFAM: regulatory protein GntR HTH; KEGG: mva:Mvan_2942 regulatory protein GntR, HTH YP_001528002.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_06637 short-chain alcohol dehydrogenase-like protein YP_001528003.1 PFAM: nitroreductase; KEGG: pth:PTH_0474 nitroreductase YP_001528004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mka:MK0462 ferredoxin YP_001528006.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cgt:cgR_0687 hypothetical protein YP_001528007.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: dps:DP3095 probable carbamoyl-phosphate synthase, small subunit YP_001528008.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: sat:SYN_01625 carbamoyl-phosphate synthase large chain YP_001528009.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: sfu:Sfum_0007 amidophosphoribosyltransferase YP_001528010.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF1263 iron-sulfur cluster binding protein YP_001528011.1 PFAM: regulatory protein MarR; KEGG: drm:Dred_0308 transcriptional regulator, MarR family YP_001528012.1 PFAM: protein of unknown function DUF343; Methyltransferase type 11; KEGG: pca:Pcar_2700 hypothetical protein YP_001528013.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sat:SYN_01672 molybdopterin dependent oxidoreductase YP_001528014.1 KEGG: acr:Acry_3623 hypothetical protein YP_001528015.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sfu:Sfum_1596 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_001528016.1 KEGG: aci:ACIAD3032 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001528017.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: ppd:Ppro_2005 cytochrome c biogenesis protein, transmembrane region YP_001528018.1 PFAM: Thioredoxin domain; KEGG: pca:Pcar_0427 hypothetical protein YP_001528019.1 PFAM: NUDIX hydrolase; KEGG: son:SO_2220 MutT/nudix family protein YP_001528021.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase, GNAT family YP_001528022.1 KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001528023.1 KEGG: cdf:CD0736 hypothetical protein YP_001528024.1 PFAM: ATP-grasp domain protein; KEGG: pho:PH1788 hypothetical protein YP_001528025.1 PFAM: CoA-binding domain protein; KEGG: pfu:PF0532 hypothetical protein YP_001528026.1 PFAM: Hpt domain protein; KEGG: mms:mma_0858 hypothetical protein YP_001528027.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_2946 response regulator receiver modulated serine phosphatase YP_001528028.1 KEGG: aba:Acid345_2515 putative anti-sigma regulatory factor, serine/threonine protein kinase YP_001528029.1 PFAM: Protein of unknown function DUF933; KEGG: sfu:Sfum_4023 protein of unknown function DUF933 YP_001528030.1 PFAM: amidohydrolase 2; KEGG: sfu:Sfum_2096 amidohydrolase 2 YP_001528031.1 KEGG: afu:AF1134 hypothetical protein YP_001528035.1 PFAM: transglutaminase domain protein; KEGG: gur:Gura_4178 transglutaminase domain protein YP_001528036.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: gsu:GSU2001 DNA mismatch repair protein MutL YP_001528037.1 KEGG: sfu:Sfum_0324 hypothetical protein YP_001528038.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001528039.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: tte:TTE0606 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_001528040.1 KEGG: sth:STH217 ABC-2 type transport system permease protein YP_001528041.1 KEGG: sfu:Sfum_2341 type IV pilus assembly PilZ YP_001528042.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein YP_001528043.1 KEGG: chy:CHY_1608 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001528044.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sfu:Sfum_2408 NAD-dependent epimerase/dehydratase YP_001528045.1 KEGG: fra:Francci3_3261 hypothetical protein YP_001528046.1 PFAM: UspA domain protein; KEGG: sat:SYN_03717 hypothetical cytosolic protein YP_001528047.1 PFAM: UspA domain protein; KEGG: nca:Noca_2967 UspA domain protein YP_001528048.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: sat:SYN_01216 potassium channel protein YP_001528049.1 PFAM: CoA-binding domain protein; KEGG: pfu:PF1838 hypothetical protein YP_001528050.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sfu:Sfum_1838 RNA binding S1 domain protein YP_001528051.1 PFAM: AMP-dependent synthetase and ligase; KEGG: vfi:VF2264 long-chain-fatty-acid--CoA ligase YP_001528052.1 PFAM: TfoX domain protein; KEGG: mag:amb1332 regulator of competence-specific gene YP_001528053.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001528054.1 PFAM: regulatory protein TetR; KEGG: cac:CAC3687 transcriptional regulator, AcrR family YP_001528055.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: btk:BT9727_2708 enoyl-CoA hydratase YP_001528056.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ttj:TTHA0241 oxidoreductase, short-chain dehydrogenase/reductase family YP_001528057.1 KEGG: gsu:GSU1390 DNA-binding protein YP_001528058.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0431 putative ATP-binding component of a transport system YP_001528059.1 PFAM: alpha/beta hydrolase fold; KEGG: hch:HCH_00189 predicted hydrolase of the alpha/beta-hydrolase fold YP_001528060.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swo:Swol_0919 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_001528061.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sfu:Sfum_2710 peptidylprolyl isomerase, FKBP-type YP_001528062.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2447 transcriptional regulator, TetR family YP_001528063.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mem:Memar_0454 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001528064.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mac:MA0667 hypothetical protein YP_001528065.1 PFAM: protein of unknown function DUF169; KEGG: afu:AF1313 hypothetical protein YP_001528066.1 KEGG: cbh:CLC_0809 hypothetical protein YP_001528067.1 PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_A0833 putative translation initiation inhibitor, YjgF family YP_001528068.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3864 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001528069.1 KEGG: ppd:Ppro_1081 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001528070.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0095 iron-sulfur cluster-binding protein YP_001528071.1 PFAM: regulatory protein TetR; KEGG: sfu:Sfum_3459 transcriptional regulator, TetR family YP_001528072.1 KEGG: sat:SYN_01176 hypothetical cytosolic protein YP_001528073.1 PFAM: regulatory protein MerR; KEGG: pla:Plav_1547 putative transcriptional regulator, MerR family YP_001528074.1 KEGG: sfu:Sfum_1905 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001528075.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dps:DP2621 similar to sec-independent protein translocase protein TatA YP_001528076.1 PFAM: regulatory protein MerR; KEGG: pth:PTH_2704 predicted transcriptional regulator YP_001528077.1 PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: sat:SYN_00638 tungsten formylmethanofuran dehydrogenase subunit E YP_001528079.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sus:Acid_4388 Rieske (2Fe-2S) domain protein YP_001528080.1 KEGG: sus:Acid_3885 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001528081.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eba:ebA5790 ethylbenzene dehydrogenase, alpha subunit YP_001528082.1 KEGG: eba:c1A62 gamma-subunit of ethylbenzene dehydrogenase YP_001528083.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5791 ethylbenzene dehydrogenase, beta subunit YP_001528084.1 KEGG: eba:c1A60 delta-subunit of ethylbenzene dehydrogenase YP_001528085.1 PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_4387 cytochrome b/b6, N-terminal domain YP_001528086.1 KEGG: sus:Acid_4386 hypothetical protein YP_001528087.1 PFAM: cytochrome c class I; KEGG: sus:Acid_4385 hypothetical protein YP_001528088.1 SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: gsu:GSU2911 hypothetical protein YP_001528089.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ttj:TTHA0110 molybdopterin biosynthesis MoeA YP_001528090.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: csc:Csac_1797 acyl-CoA dehydrogenase domain protein YP_001528091.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ttj:TTHA1916 acyl-CoA dehydrogenase YP_001528092.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP0495 similar to methyl-accepting chemotaxis protein YP_001528093.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: dar:Daro_1782 molybdopterin-guanine dinucleotide biosynthesis MobB region YP_001528094.1 PFAM: regulatory protein LysR; KEGG: wsu:WS1811 molybdenum-pterin-binding protein YP_001528095.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pth:PTH_0841 ABC-type molybdate transport system, periplasmic component YP_001528096.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nis:NIS_0019 molybdenum ABC transporter, permease YP_001528097.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK0021 ABC-type sulfate transport system, ATPase component YP_001528099.1 KEGG: smr:Smar_0071 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001528100.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mta:Moth_1982 binding-protein-dependent transport systems inner membrane component YP_001528101.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK0021 ABC-type sulfate transport system, ATPase component YP_001528102.1 KEGG: dps:DP0463 hypothetical protein YP_001528104.1 PFAM: lipid-binding START domain protein; KEGG: plt:Plut_0962 hypothetical protein YP_001528106.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1777 bacteriochlorophyll c8 methyltransferase YP_001528108.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_2063 pyruvate phosphate dikinase, PEP/pyruvate-binding YP_001528109.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sfu:Sfum_2062 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) YP_001528110.1 PFAM: response regulator receiver; KEGG: sat:SYN_01292 response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_001528111.1 KEGG: vco:VC0395_A2533 fatty oxidation complex, beta subunit; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001528112.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1731 long-chain-fatty-acid--CoA ligase YP_001528113.1 PFAM: Sterol-binding domain protein; KEGG: rrs:RoseRS_2973 hypothetical protein YP_001528115.1 PFAM: regulatory protein TetR; KEGG: aae:aq_281 transcriptional regulator (TetR/AcrR family) YP_001528116.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase YP_001528118.1 PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein YP_001528119.1 KEGG: hne:HNE_0289 hypothetical protein YP_001528120.1 KEGG: drm:Dred_0028 hypothetical protein YP_001528121.1 KEGG: btl:BALH_3328 LexA repressor (SOS response repressor); TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_001528122.1 PFAM: protein of unknown function DUF72; KEGG: mta:Moth_0268 protein of unknown function DUF72 YP_001528123.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0928 DNA-directed DNA polymerase YP_001528124.1 KEGG: sfu:Sfum_0929 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001528126.1 KEGG: dvl:Dvul_2599 transcriptional regulator-like protein YP_001528127.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hit:NTHI1638 predicted serine/threonine protein phosphatase family protein YP_001528128.1 KEGG: mgm:Mmc1_3050 hypothetical protein YP_001528130.1 KEGG: amt:Amet_3301 hypothetical protein YP_001528131.1 PFAM: protein of unknown function DUF45; KEGG: dno:DNO_0219 hypothetical protein YP_001528132.1 KEGG: dno:DNO_0220 type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001528133.1 PFAM: protein of unknown function DUF262; KEGG: tfu:Tfu_0065 similar to uncharacterized conserved protein YP_001528134.1 PFAM: protein of unknown function DUF262; KEGG: fjo:Fjoh_2693 protein of unknown function DUF262 YP_001528135.1 PFAM: protein of unknown function DUF262; KEGG: sbm:Shew185_2195 protein of unknown function DUF262 YP_001528136.1 PFAM: restriction modification system DNA specificity domain; KEGG: sbm:Shew185_2194 restriction modification system DNA specificity domain protein YP_001528137.1 KEGG: tdn:Tmden_0947 putative transcriptional regulator YP_001528138.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: dno:DNO_0223 type I restriction-modification system, M subunit YP_001528139.1 KEGG: bvi:Bcep1808_6843 hypothetical protein YP_001528140.1 KEGG: jan:Jann_2750 cell division protein FtsZ YP_001528142.1 PFAM: Tubulin/FtsZ GTPase; KEGG: gvi:gll0298 cell division protein FtsZ YP_001528147.1 PFAM: beta-lactamase domain protein; KEGG: dvu:DVU1700 metallo-beta-lactamase family protein YP_001528148.1 KEGG: sfu:Sfum_1225 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001528149.1 KEGG: dsy:DSY2902 hypothetical protein YP_001528150.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sde:Sde_1224 hypothetical protein YP_001528152.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: esa:ESA_00407 hypothetical protein YP_001528153.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rde:RD1_0535 amine oxidase family, flavin-containing YP_001528154.1 KEGG: sfu:Sfum_4047 cytochrome c, class III YP_001528155.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sfu:Sfum_0160 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001528158.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: swo:Swol_1485 3-hydroxybutyryl-CoA dehydrogenase YP_001528160.1 PFAM: Integral membrane protein TerC; KEGG: gur:Gura_0899 integral membrane protein TerC YP_001528161.1 PFAM: Radical SAM domain protein YP_001528162.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fnu:FN1787 tetratricopeptide repeat family protein YP_001528163.1 PFAM: N-6 DNA methylase; KEGG: syf:Synpcc7942_1060 type I restriction-modification YP_001528164.1 PFAM: restriction modification system DNA specificity domain; KEGG: pha:PSHAa2093 type I restriction-modification system, S subunit YP_001528165.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: mba:Mbar_A1014 type I restriction-modification system restriction subunit YP_001528166.1 KEGG: nha:Nham_0599 hypothetical protein YP_001528167.1 PFAM: Gp37Gp68 family protein; KEGG: sus:Acid_6594 phage Gp37Gp68 family protein YP_001528169.1 KEGG: ade:Adeh_3553 hypothetical protein YP_001528170.1 KEGG: dar:Daro_2292 hypothetical protein YP_001528173.1 PFAM: HIRAN YP_001528174.1 KEGG: pde:Pden_1227 hypothetical protein YP_001528175.1 PFAM: integrase family protein; KEGG: prw:PsycPRwf_0726 phage integrase family protein YP_001528176.1 PFAM: protein of unknown function DUF167; KEGG: sat:SYN_00105 hypothetical cytosolic protein YP_001528177.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity YP_001528178.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase YP_001528179.1 PFAM: aminotransferase class I and II; KEGG: sfu:Sfum_1219 aminotransferase, class I and II YP_001528180.1 KEGG: gur:Gura_2153 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001528181.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001528182.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases YP_001528183.1 KEGG: sma:SAV2762 hypothetical protein YP_001528184.1 TIGRFAM: methyltransferase FkbM family; KEGG: bcz:BCZK4981 hypothetical protein YP_001528185.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: ppd:Ppro_2781 hydrogenase accessory protein HypB YP_001528186.1 PFAM: protein of unknown function DUF52; KEGG: pis:Pisl_1105 protein of unknown function DUF52 YP_001528187.1 KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein YP_001528188.1 KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein YP_001528189.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative YP_001528190.1 KEGG: dde:Dde_3708 hypothetical protein YP_001528191.1 KEGG: dvl:Dvul_2712 hypothetical protein YP_001528192.1 PFAM: cytochrome c class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c YP_001528193.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbe:Cbei_2449 electron transport complex, RnfABCDGE type, C subunit YP_001528194.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 electron transport complex protein RnfD YP_001528195.1 PFAM: FMN-binding domain protein; KEGG: cbf:CLI_0442 electron transport complex, RnfABCDGE type, G subunit YP_001528196.1 PFAM: RnfA-Nqr electron transport subunit; KEGG: cpe:CPE1063 probable Na-translocating NADH-quinone reductase YP_001528197.1 PFAM: RnfA-Nqr electron transport subunit; KEGG: ctc:CTC01023 rnfA/nqrE YP_001528198.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cbh:CLC_0431 electron transport complex, RnfABCDGE type, B subunit YP_001528200.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_0579 anaerobic dehydrogenases YP_001528201.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_5343 AMP-dependent synthetase and ligase YP_001528202.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: gsu:GSU2489 deoxyribonuclease, TatD family YP_001528203.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mta:Moth_1518 oxidoreductase FAD/NAD(P)-binding YP_001528204.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_00606 glutamate synthase (NADPH) YP_001528205.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: sfu:Sfum_0579 nitrogen-fixing NifU domain protein YP_001528208.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sth:STH2445 signal peptidase I YP_001528209.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3936 serine/threonine protein kinase with TPR repeats YP_001528210.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: aba:Acid345_3544 transcriptional regulator, CadC YP_001528211.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: mca:MCA1020 phosphoesterase, putative YP_001528212.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: psa:PST_3859 GGDEF domain protein YP_001528213.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sfu:Sfum_2110 antibiotic biosynthesis monooxygenase YP_001528214.1 KEGG: rru:Rru_A1207 exopolyphosphatase-related protein YP_001528215.1 PFAM: Ig domain protein group 1 domain protein; KEGG: pat:Patl_2358 Ig-like, group 1 YP_001528216.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: gme:Gmet_0975 type II and III secretion system protein:NolW-like:secretin/TonB, short-like YP_001528217.1 KEGG: ang:An01g09380 hypothetical protein Pfam: Extensin_2 Troponin YP_001528218.1 PFAM: Pilus assembly protein PilO; KEGG: gur:Gura_1812 pilus assembly protein, PilO YP_001528219.1 PFAM: Fimbrial assembly family protein; KEGG: gur:Gura_1811 fimbrial assembly family protein YP_001528220.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM YP_001528221.1 KEGG: gur:Gura_1809 transcriptional regulator, XRE family YP_001528222.1 KEGG: sat:SYN_00762 hypothetical membrane protein YP_001528223.1 PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_2018 beta-lactamase domain protein YP_001528224.1 PFAM: AMP-dependent synthetase and ligase; KEGG: afu:AF1772 long-chain-fatty-acid--CoA ligase (FadD-7) YP_001528226.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001528227.1 KEGG: afw:Anae109_3580 hypothetical protein YP_001528228.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001528229.1 PFAM: ferric-uptake regulator; FeoA family protein; KEGG: gsu:GSU1379 ferric uptake regulation protein Fur YP_001528230.1 PFAM: FeoA family protein; KEGG: efa:EF0475 ferrous iron transport protein A YP_001528231.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pgi:PG1294 ferrous iron transport protein B YP_001528232.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_00526 calcineurin-like phosphoesterase YP_001528233.1 PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: dps:DP2276 hypothetical protein YP_001528234.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein YP_001528235.1 PFAM: protein of unknown function DUF362; KEGG: gsu:GSU2682 hypothetical protein YP_001528236.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; protein of unknown function DUF1365; Methyltransferase type 11; Methyltransferase type 12; KEGG: mmw:Mmwyl1_4070 cyclopropane-fatty-acyl-phospholipid synthase YP_001528237.1 PFAM: amine oxidase; KEGG: ppd:Ppro_0129 hypothetical protein YP_001528238.1 KEGG: hne:HNE_0999 hypothetical protein YP_001528239.1 PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase domain protein; protein of unknown function DUF1295; KEGG: pla:Plav_2902 protein of unknown function DUF1295 YP_001528240.1 KEGG: rru:Rru_A0726 major facilitator superfamily MFS_1 YP_001528241.1 KEGG: gsu:GSU2320 hypothetical protein YP_001528242.1 KEGG: dde:Dde_0607 hypothetical protein YP_001528243.1 PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3135 regulatory protein, ArsR YP_001528244.1 KEGG: mja:MJ1388 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; Acetohydroxy acid isomeroreductase catalytic domain protein; S-adenosyl-L-homocysteine hydrolase, NAD binding YP_001528245.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: plu:plu1308 apolipoprotein N-acyltransferase (ALP N-acyltransferase) (copper homeostasis protein CutE) YP_001528246.1 KEGG: pae:PA2863 lipase modulator protein YP_001528247.1 KEGG: cac:CAC1028 hydrolase of alpha/beta superfamily, possible membrane associated lipase YP_001528248.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein YP_001528249.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter YP_001528250.1 SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease YP_001528251.1 PFAM: protein of unknown function DUF362; KEGG: chy:CHY_1734 hypothetical protein YP_001528252.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_0717 radical SAM domain protein YP_001528253.1 PFAM: S23 ribosomal protein; KEGG: rba:RB10686 hypothetical protein YP_001528254.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: gvi:glr2297 transketolase YP_001528255.1 PFAM: Methyltransferase type 11; KEGG: noc:Noc_0154 hypothetical protein YP_001528256.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: pca:Pcar_0674 periplasmic molybdate-binding protein/domain YP_001528257.1 PFAM: phosphoesterase RecJ domain protein; KEGG: sfu:Sfum_0851 phosphoesterase, RecJ domain protein YP_001528258.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein YP_001528259.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sfu:Sfum_0997 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001528260.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001528261.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_001528262.1 PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase YP_001528263.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001528264.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A0094 hypothetical protein YP_001528265.1 KEGG: sat:SYN_01910 hypothetical cytosolic protein YP_001528266.1 KEGG: sfu:Sfum_1600 quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_001528267.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: sfu:Sfum_1599 outer membrane lipoprotein carrier protein LolA YP_001528268.1 KEGG: sfu:Sfum_2607 hypothetical protein YP_001528269.1 KEGG: sfu:Sfum_1296 hypothetical protein YP_001528270.1 KEGG: sat:SYN_02454 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: UbiA prenyltransferase; LytB protein YP_001528271.1 PFAM: protein of unknown function DUF205; KEGG: gme:Gmet_3020 protein of unknown function DUF205 YP_001528272.1 PFAM: Smr protein/MutS2; KEGG: afw:Anae109_4369 Smr protein/MutS2 YP_001528273.1 PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 putative phenylacetic acid degradation protein YP_001528275.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001528276.1 KEGG: sfu:Sfum_3035 membrane-bound lytic murein transglycosylase B-like YP_001528278.1 KEGG: bce:BC1537 biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase YP_001528279.1 KEGG: mmr:Mmar10_0677 exporter of the RND superfamily YP_001528280.1 KEGG: acb:A1S_1771 hypothetical protein YP_001528281.1 PFAM: GH3 auxin-responsive promoter; KEGG: aci:ACIAD3676 hypothetical protein YP_001528282.1 KEGG: pst:PSPTO_2820 hypothetical protein YP_001528283.1 KEGG: sde:Sde_1316 hypothetical protein YP_001528284.1 KEGG: afu:AF2236 conserved hypothetical protein YP_001528285.1 KEGG: pai:PAE2929 aldo-keto reductase, putative YP_001528286.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mem:Memar_1711 geranylgeranyl reductase YP_001528287.1 PFAM: periplasmic solute binding protein; KEGG: sfu:Sfum_0024 periplasmic solute binding protein YP_001528288.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP3061 related to Mn/Zn ABC transporter, ATP-binding protein YP_001528289.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: dps:DP3062 probable Mn/Zn ABC transporter, permease YP_001528290.1 KEGG: pca:Pcar_1472 hypothetical protein YP_001528291.1 TIGRFAM: methyltransferase GidB; PFAM: tRNA/rRNA methyltransferase (SpoU); glucose inhibited division protein; KEGG: sfu:Sfum_1152 methyltransferase GidB YP_001528292.1 PFAM: pseudouridine synthase; KEGG: sfu:Sfum_1153 pseudouridine synthase YP_001528293.1 KEGG: sat:SYN_02451 hypothetical cytosolic protein YP_001528294.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sun:SUN_1632 Fe-S oxidoreductase YP_001528296.1 PFAM: ABC-1 domain protein; KEGG: gvi:gll4412 hypothetical protein YP_001528297.1 KEGG: gur:Gura_3864 hypothetical protein YP_001528298.1 PFAM: PilT protein domain protein; KEGG: gur:Gura_3863 PilT protein domain protein YP_001528299.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: aci:ACIAD2835 putative Mg transporter (MgtE) YP_001528300.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein YP_001528301.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_001528302.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein YP_001528303.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: sfu:Sfum_3863 filamentation induced by cAMP protein Fic YP_001528304.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rba:RB9119 magnesium transporter Ykok YP_001528306.1 KEGG: tbd:Tbd_1067 hypothetical protein YP_001528307.1 KEGG: pca:Pcar_3039 hypothetical protein YP_001528308.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mta:Moth_2203 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_001528309.1 PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2718 metallophosphoesterase YP_001528310.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rxy:Rxyl_2282 serine/threonine protein kinase YP_001528312.1 KEGG: stm:STM4172 zinc-resistance associated protein YP_001528313.1 KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001528314.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ypi:YpsIP31758_2820 transcriptional regulatory protein ZraR YP_001528315.1 KEGG: noc:Noc_1342 peptidoglycan-binding LysM YP_001528316.1 KEGG: stm:STM4172 zinc-resistance associated protein YP_001528317.1 KEGG: mac:MA1327 hypothetical protein YP_001528318.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: gfo:GFO_1338 CotA-like multicopper oxidase YP_001528319.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: pap:PSPA7_3695 putative helicase YP_001528320.1 KEGG: ace:Acel_0818 hypothetical protein YP_001528321.1 PFAM: PglZ domain protein; KEGG: ace:Acel_0817 hypothetical protein YP_001528322.1 KEGG: sfu:Sfum_3781 hypothetical protein YP_001528323.1 PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein YP_001528324.1 PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein YP_001528325.1 KEGG: dvl:Dvul_0722 hypothetical protein YP_001528326.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001528327.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sfu:Sfum_4075 thiamine pyrophosphate enzyme domain protein TPP-binding YP_001528328.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase YP_001528329.1 KEGG: noc:Noc_0412 hypothetical protein YP_001528330.1 PFAM: HicB family protein; KEGG: pac:PPA1449 conserved HicB family protein YP_001528331.1 KEGG: noc:Noc_A0034 hypothetical protein YP_001528333.1 KEGG: acb:A1S_3464 Cro-like protein YP_001528335.1 PFAM: ribonuclease II; KEGG: sfu:Sfum_0728 exoribonuclease II YP_001528336.1 KEGG: sfu:Sfum_1145 hypothetical protein YP_001528337.1 PFAM: Nitrate reductase gamma subunit; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit YP_001528338.1 KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding YP_001528339.1 KEGG: dde:Dde_2273 cytochrome c family protein YP_001528340.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001528341.1 PFAM: Polysulphide reductase NrfD; KEGG: sfu:Sfum_1150 polysulphide reductase, NrfD YP_001528342.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ava:Ava_4070 putative MerR-family transcriptional regulator YP_001528343.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0095 iron-sulfur cluster-binding protein YP_001528344.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_05785 transcriptional regulator YP_001528345.1 PFAM: methylenetetrahydrofolate reductase; KEGG: sfu:Sfum_3130 methylenetetrahydrofolate reductase YP_001528346.1 KEGG: dde:Dde_0648 hmc operon protein 6 YP_001528347.1 KEGG: dde:Dde_3708 hypothetical protein YP_001528348.1 KEGG: chy:CHY_1232 hypothetical protein YP_001528349.1 PFAM: cytochrome c class III; KEGG: dde:Dde_3710 acidic cytochrome c3 YP_001528350.1 PFAM: DsrC family protein; KEGG: sfu:Sfum_4045 DsrC family protein YP_001528351.1 SMART: regulatory protein AsnC/Lrp family; KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family YP_001528352.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_2191 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001528353.1 KEGG: sfu:Sfum_1666 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_001528354.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfu:Sfum_1671 FolC bifunctional protein YP_001528355.1 TIGRFAM: ribosomal protein S21; KEGG: pca:Pcar_2255 30S ribosomal protein S21 YP_001528356.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001528357.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001528358.1 PFAM: ribosomal protein L31; KEGG: sfu:Sfum_1712 ribosomal protein L31 YP_001528359.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pca:Pcar_2692 peptide chain release factor 1 YP_001528360.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sfu:Sfum_1714 modification methylase, HemK family YP_001528361.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001528362.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: sfu:Sfum_1779 translation elongation factor Ts YP_001528363.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: ade:Adeh_0280 uridylate kinase YP_001528364.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001528365.1 KEGG: gur:Gura_3729 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001528366.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sat:SYN_00917 phosphatidate cytidylyltransferase YP_001528367.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001528368.1 KEGG: gme:Gmet_1257 peptidase M50, putative membrane-associated zinc metallopeptidase; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_001528369.1 PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfu:Sfum_0432 phosphoribosylformylglycinamidine synthase YP_001528370.1 KEGG: sfu:Sfum_0433 phosphoribosylformylglycinamidine synthase I YP_001528371.1 KEGG: lmo:lmo1798 hypothetical protein YP_001528372.1 KEGG: slo:Shew_3606 signal recognition particle-docking protein FtsY YP_001528373.1 KEGG: sat:SYN_01761 pilin assembly protein YP_001528374.1 KEGG: dps:DP1458 hypothetical protein YP_001528375.1 KEGG: sfu:Sfum_2554 hypothetical protein YP_001528376.1 KEGG: noc:Noc_2273 type IV pilus assembly protein PilX YP_001528377.1 SMART: Pyrrolo-quinoline quinone; KEGG: neu:NE1747 putative type 4 fimbrial biogenesis protein PilY1 YP_001528379.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rba:RB12347 similar to hydrolase YP_001528380.1 KEGG: rba:RB5546 hypothetical protein YP_001528381.1 KEGG: ttj:TTHA0837 metallo-beta-lactamase family protein YP_001528382.1 PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase YP_001528383.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gme:Gmet_3075 ExsB YP_001528384.1 PFAM: Radical SAM domain protein; KEGG: sat:SYN_01560 queuosine biosynthesis protein YP_001528385.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: gme:Gmet_1949 preprotein translocase SecG subunit YP_001528386.1 PFAM: triosephosphate isomerase; KEGG: gsu:GSU1628 phosphoglycerate kinase/triosephosphate isomerase YP_001528387.1 KEGG: gka:GK3058 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001528388.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02847 acetyltransferase GNAT family YP_001528389.1 PFAM: PTS system fructose subfamily IIA component; KEGG: sat:SYN_02844 pts system fructose IIA component YP_001528390.1 PFAM: conserved hypothetical protein; KEGG: sat:SYN_00941 ATP-binding protein YP_001528391.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pca:Pcar_1936 PTS system, IIA component YP_001528392.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: gsu:GSU1886 ribosomal subunit interface protein YP_001528393.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ade:Adeh_4167 sigma-54 (RpoN) YP_001528394.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2973 ABC transporter related YP_001528395.1 PFAM: OstA family protein; KEGG: ppd:Ppro_0972 OstA family protein YP_001528396.1 PFAM: protein of unknown function DUF1239; KEGG: afw:Anae109_4315 hypothetical protein YP_001528397.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sgl:SG0203 hypothetical protein YP_001528398.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001528399.1 PFAM: peptidase M23B; KEGG: dvl:Dvul_1311 peptidase M23B YP_001528400.1 KEGG: dps:DP0107 related to signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001528401.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001528402.1 KEGG: sat:SYN_01533 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_001528403.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_2092 two component, sigma54 specific, transcriptional regulator, fis family YP_001528404.1 KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin YP_001528405.1 KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins YP_001528406.1 PFAM: DSBA oxidoreductase; Vitamin K epoxide reductase; KEGG: afw:Anae109_3126 vitamin K epoxide reductase YP_001528407.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: lbj:LBJ_0629 nucleoside-diphosphate-sugar epimerase YP_001528408.1 PFAM: Nucleotidyl transferase; KEGG: hwa:HQ3507A sugar nucleotidyltransferase II (probable glucose-1-phosphate thymidylyltransferase) YP_001528409.1 PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_0145 hypothetical protein YP_001528410.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: sfu:Sfum_0803 NAD-dependent epimerase/dehydratase YP_001528411.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_0130 glycosyl transferase, family 2 YP_001528412.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3219 glycosyl transferase, family 2 YP_001528413.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3806 glycosyl transferase, family 2 YP_001528414.1 TIGRFAM: methyltransferase FkbM family; KEGG: syn:slr0907 hypothetical protein YP_001528415.1 PFAM: glycosyl transferase group 1; KEGG: mma:MM_0654 mannosyltransferase YP_001528418.1 PFAM: Methyltransferase type 11 YP_001528419.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: lic:LIC12135 polysaccharide biosynthesis export protein YP_001528420.1 KEGG: swo:Swol_0701 hypothetical protein YP_001528421.1 PFAM: glycosyl transferase family 2; KEGG: syx:SynWH7803_0193 glycosyltransferase of family GT2 YP_001528422.1 PFAM: glycosyl transferase family 2; KEGG: sde:Sde_0868 ribonuclease BN YP_001528423.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_1060 type II secretion system protein E YP_001528424.1 PFAM: Peptidoglycan-binding LysM; KEGG: ade:Adeh_2701 peptidoglycan-binding LysM YP_001528425.1 KEGG: ade:Adeh_0664 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_001528426.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein YP_001528427.1 KEGG: tte:TTE0041 recombinational DNA repair protein; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein YP_001528428.1 PFAM: conserved hypothetical protein; KEGG: sat:SYN_00162 hypothetical protein YP_001528429.1 KEGG: sfu:Sfum_2789 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001528430.1 PFAM: putative RNA methylase; methyltransferase small; KEGG: sat:SYN_01006 methyltransferase YP_001528432.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: ade:Adeh_3522 HflK protein YP_001528433.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: ade:Adeh_3523 HflC protein YP_001528434.1 KEGG: sfu:Sfum_3505 hypothetical protein YP_001528435.1 TIGRFAM: putative regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_1038 putative regulatory protein, FmdB family YP_001528436.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001528437.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001528438.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pca:Pcar_1022 ammonium transporter YP_001528439.1 PFAM: nitrogen regulatory protein P-II; KEGG: nme:NMB1995 nitrogen regulatory protein P-II YP_001528440.1 PFAM: Forkhead-associated protein; KEGG: mxa:MXAN_1525 FHA domain/GGDEF domain protein YP_001528441.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3625 protein kinase YP_001528443.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mac:MA1774 nitroreductase YP_001528444.1 PFAM: regulatory protein MerR; regulatory protein TetR; KEGG: ttj:TTHA0167 transcriptional regulator (TetR/AcrR family) YP_001528445.1 PFAM: Thiolase; KEGG: bbr:BB1086 putative thiolase YP_001528446.1 KEGG: rxy:Rxyl_1851 phenylacetate--CoA ligase YP_001528447.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase YP_001528448.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein YP_001528450.1 KEGG: pub:SAR11_1266 membrane protein of unknown function (DUF1430) YP_001528451.1 PFAM: nitrogen regulatory protein P-II; KEGG: gsu:GSU1836 nitrogen regulatory protein P-II YP_001528452.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: wsu:WS0410 ammonium transporter, AmtB YP_001528453.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_0089 ammonium transporter YP_001528454.1 KEGG: gsu:GSU1820 protein-P-II uridylyltransferase, putative; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region YP_001528455.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: fjo:Fjoh_1792 NAD+ synthetase YP_001528457.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3072 hypothetical protein YP_001528458.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_2037 putative haloacid dehalogenase-like hydrolase YP_001528459.1 KEGG: ppd:Ppro_1976 sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase YP_001528460.1 KEGG: pca:Pcar_1581 hypothetical protein YP_001528461.1 KEGG: sat:SYN_01170 hypothetical cytosolic protein YP_001528462.1 PFAM: response regulator receiver; KEGG: sat:SYN_01178 response regulator receiver domain YP_001528463.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: dps:DP0339 hypothetical protein YP_001528464.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: dps:DP0340 similar to iron-sulfur cluster binding protein YP_001528465.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sat:SYN_01180 dinitrogenase iron-molybdenum cofactor protein YP_001528466.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0948 beta-lactamase domain protein YP_001528467.1 PFAM: Protein of unknown function CGGC region; KEGG: afu:AF1756 hypothetical protein YP_001528468.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mbu:Mbur_0621 dinitrogenase iron-molybdenum cofactor biosynthesis YP_001528469.1 KEGG: lpf:lpl1943 hypothetical protein YP_001528471.1 KEGG: pca:Pcar_0954 hypothetical protein YP_001528472.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: syn:slr1117 hypothetical protein YP_001528473.1 PFAM: CoA-binding domain protein; KEGG: sat:SYN_01949 acyl-CoA synthetase YP_001528474.1 PFAM: transglutaminase domain protein; KEGG: sat:SYN_00833 transglutaminase-like superfamily member YP_001528475.1 PFAM: aminotransferase class I and II; KEGG: gme:Gmet_2078 hypothetical protein YP_001528476.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: mba:Mbar_A0270 hypothetical protein YP_001528477.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: sth:STH2808 putative muramoyltetrapeptide carboxypeptidase YP_001528478.1 PFAM: beta-lactamase; KEGG: sfu:Sfum_0547 beta-lactamase YP_001528479.1 functions in MreBCD complex in some organisms YP_001528480.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: gur:Gura_2860 rod shape-determining protein MreC YP_001528482.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase YP_001528483.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: gme:Gmet_0929 rod shape-determining protein RodA YP_001528484.1 PFAM: protein of unknown function DUF583; KEGG: afw:Anae109_4500 protein of unknown function DUF583 YP_001528485.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sat:SYN_00549 ATP synthase B chain, sodium ion specific YP_001528486.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvl:Dvul_2191 H+-transporting two-sector ATPase, B/B' subunit YP_001528487.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001528488.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001528489.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_001528490.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001528491.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: dvl:Dvul_2196 ATP synthase F1, epsilon subunit YP_001528492.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: sat:SYN_02437 UDP-N-acetylglucosamine pyrophosphorylase YP_001528495.1 KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: KH type 1 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_001528496.1 KEGG: sfu:Sfum_2577 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_001528497.1 KEGG: pgi:PG1180 membrane protein, putative YP_001528498.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_2639 type I secretion outer membrane protein, TolC family YP_001528499.1 PFAM: Hemolysin-type calcium-binding region; KEGG: gsu:GSU1154 surface repeat protein, putative YP_001528501.1 PFAM: Radical SAM domain protein; KEGG: pdi:BDI_3207 putative Fe-S oxidoreductase YP_001528503.1 PFAM: O-methyltransferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: mjl:Mjls_0227 O-methyltransferase, family 2 YP_001528504.1 KEGG: mgm:Mmc1_2178 hypothetical protein YP_001528505.1 PFAM: GAF domain protein; KEGG: mgm:Mmc1_2177 GAF domain protein YP_001528506.1 KEGG: nmu:Nmul_A0925 peptidase, M50 family YP_001528507.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_001528508.1 KEGG: nmu:Nmul_A0923 secretion protein HlyD YP_001528509.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gur:Gura_1334 two component transcriptional regulator, winged helix family YP_001528510.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_1292 histidine kinase YP_001528511.1 KEGG: mag:amb2476 hypothetical protein YP_001528512.1 PFAM: aminodeoxychorismate lyase; KEGG: gsu:GSU0508 conserved hypothetical protein TIGR00247 YP_001528513.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pmy:Pmen_2640 acyl-CoA dehydrogenase domain protein YP_001528514.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pca:Pcar_1295 dihydroorotate dehydrogenase, electron transfer subunit, putative YP_001528515.1 KEGG: sfu:Sfum_1607 hypothetical protein YP_001528516.1 KEGG: sat:SYN_00587 hypothetical membrane protein YP_001528517.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: sfu:Sfum_1605 ATP synthase F0, A subunit YP_001528518.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: sfu:Sfum_1604 ATP synthase F0, C subunit YP_001528519.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pca:Pcar_0087 excinuclease ABC, A subunit YP_001528520.1 KEGG: ppd:Ppro_3229 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001528521.1 KEGG: dde:Dde_2452 hypothetical protein YP_001528522.1 PFAM: CBS domain containing protein; KEGG: dps:DP0129 hypothetical protein YP_001528523.1 PFAM: integrase family protein; KEGG: sfu:Sfum_2499 phage integrase family protein YP_001528525.1 KEGG: dde:Dde_0206 hypothetical protein YP_001528527.1 PFAM: protein of unknown function DUF805; KEGG: ppr:PBPRA2479 hypothetical protein YP_001528531.1 KEGG: pol:Bpro_0407 hypothetical protein YP_001528532.1 KEGG: ana:alr2258 serine/threonine kinase with two-component sensor domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; protein kinase; GAF domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase YP_001528533.1 KEGG: bha:BH2709 hypothetical protein YP_001528534.1 PFAM: ABC-1 domain protein; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative YP_001528535.1 PFAM: chemotaxis sensory transducer; KEGG: dps:DP1276 similar to methyl-accepting chemotaxis protein YP_001528536.1 PFAM: PfkB domain protein; KEGG: mfa:Mfla_2609 PfkB YP_001528537.1 KEGG: neu:NE1213 glycosyl transferase group 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; sucrose-phosphate synthase; PFAM: glycosyl transferase group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3 YP_001528538.1 KEGG: ssv:SSU98_1563 glycosidase YP_001528540.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: sfu:Sfum_1220 selenocysteine-specific translation elongation factor YP_001528541.1 KEGG: sfu:Sfum_0004 hypothetical protein YP_001528542.1 KEGG: hch:HCH_01878 hypothetical protein YP_001528543.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mem:Memar_1765 peptidylprolyl isomerase, FKBP-type YP_001528545.1 PFAM: protein of unknown function DUF497; KEGG: cbd:COXBU7E912_0131 hypothetical protein YP_001528546.1 KEGG: neu:NE2102 hypothetical protein YP_001528547.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001528550.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mth:MTH1494 hypothetical protein YP_001528551.1 PFAM: nitroreductase; KEGG: gur:Gura_3515 nitroreductase YP_001528552.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pha:PSHAa2481 enoyl-CoA hydratase YP_001528553.1 KEGG: dde:Dde_2020 HesB family selenoprotein YP_001528555.1 PFAM: Appr-1-p processing domain protein; KEGG: pca:Pcar_2036 predicted phosphatase YP_001528556.1 KEGG: sat:SYN_02534 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_001528557.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pca:Pcar_1040 aspartyl-tRNA synthetase YP_001528558.1 KEGG: afu:AF1197 3-ketoacyl-CoA thiolase (FadA-2); TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001528560.1 KEGG: gur:Gura_0005 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001528561.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: gme:Gmet_0008 NAD-dependent glycerol-3-phosphate dehydrogenase-like YP_001528562.1 PFAM: DNA repair protein RadC; KEGG: dps:DP0715 related to DNA repair protein RadC YP_001528564.1 PFAM: phosphoglycerate kinase; KEGG: gme:Gmet_1947 phosphoglycerate kinase YP_001528565.1 KEGG: mgm:Mmc1_0024 hypothetical protein YP_001528566.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001528567.1 KEGG: bbr:BB3333 putative 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II YP_001528568.1 TIGRFAM: dethiobiotin synthase; KEGG: mag:amb2762 dethiobiotin synthetase YP_001528569.1 KEGG: gsu:GSU1584 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001528570.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: chy:CHY_0798 putative molybdopterin biosynthesis MoeA protein YP_001528571.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sfu:Sfum_0615 molybdenum cofactor synthesis domain YP_001528574.1 KEGG: nwi:Nwi_3119 putative DNA-binding protein YP_001528575.1 PFAM: protein of unknown function DUF101; KEGG: sat:SYN_02047 hypothetical cytosolic protein YP_001528577.1 KEGG: bam:Bamb_2692 O-antigen polymerase YP_001528578.1 KEGG: tte:TTE1466 hypothetical protein YP_001528579.1 PFAM: 4-vinyl reductase 4VR; KEGG: syn:slr0144 hypothetical protein YP_001528580.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: mxa:MXAN_3162 fumarate hydratase, class I YP_001528581.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: sat:SYN_02791 membrane-bound lytic murein transglycosylase D precursor YP_001528582.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001528583.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: gsu:GSU2869 preprotein translocase, SecE subunit, putative YP_001528584.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: sfu:Sfum_1544 NusG antitermination factor YP_001528585.1 PFAM: ribosomal protein L11; KEGG: pca:Pcar_0690 ribosomal protein L11 YP_001528586.1 PFAM: ribosomal protein L1; KEGG: sfu:Sfum_1546 ribosomal protein L1 YP_001528587.1 PFAM: ribosomal protein L10; KEGG: nmu:Nmul_A0757 ribosomal protein L10 YP_001528588.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001528589.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, beta subunit YP_001528590.1 KEGG: gur:Gura_1062 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_001528591.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001528592.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001528593.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001528594.1 PFAM: ribosomal protein S10; KEGG: pca:Pcar_0700 ribosomal protein S10 YP_001528595.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001528596.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001528597.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001528598.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001528599.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: sfu:Sfum_1559 ribosomal protein S19 YP_001528600.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001528601.1 KEGG: pca:Pcar_0707 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_001528602.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001528603.1 PFAM: ribosomal protein L29; KEGG: atc:AGR_C_3543 50S ribosomal protein L29 YP_001528604.1 PFAM: ribosomal protein S17; KEGG: csc:Csac_2278 ribosomal protein S17 YP_001528605.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001528606.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001528607.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001528608.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001528609.1 PFAM: ribosomal protein S8; KEGG: sak:SAK_0105 ribosomal protein S8 YP_001528610.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001528611.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: rca:Rcas_4010 ribosomal protein L18 YP_001528612.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: sat:SYN_01592 SSU ribosomal protein S5P YP_001528613.1 PFAM: ribosomal protein L30; KEGG: sfu:Sfum_1573 ribosomal protein L30 YP_001528614.1 late assembly protein YP_001528615.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sat:SYN_01595 protein translocase subunit YP_001528616.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: sfu:Sfum_1578 translation initiation factor IF-1 YP_001528617.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001528618.1 PFAM: ribosomal protein S11; KEGG: gme:Gmet_0651 30S ribosomal protein S11 YP_001528619.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: gsu:GSU2832 ribosomal protein S4 YP_001528620.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001528621.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001528622.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mmw:Mmwyl1_1036 diguanylate cyclase YP_001528625.1 KEGG: she:Shewmr4_2139 hypothetical protein YP_001528626.1 TIGRFAM: CRISPR-associated protein Cas02710; KEGG: sat:SYN_02245 hypothetical cytosolic protein YP_001528627.1 TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: sfu:Sfum_1345 CRISPR-associated RAMP protein, Csm5 family YP_001528628.1 KEGG: sfu:Sfum_1346 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like YP_001528629.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: sfu:Sfum_1347 CRISPR-associated RAMP protein, Csm3 family YP_001528630.1 TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: sfu:Sfum_1348 CRISPR-associated protein, Csm2 family YP_001528631.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: sfu:Sfum_1349 CRISPR-associated protein, Csm1 family YP_001528632.1 TIGRFAM: putative CRISPR-associated protein, APE2256 family; PFAM: CRISPR-associated protein APE2256; KEGG: sat:SYN_02246 hypothetical cytosolic protein YP_001528633.1 TIGRFAM: CRISPR-associated protein, NE0113 family; PFAM: CRISPR-associated protein NE0113; KEGG: sat:SYN_02253 hypothetical cytosolic protein YP_001528634.1 KEGG: sat:SYN_02254 hypothetical cytosolic protein YP_001528635.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; Proto-chlorophyllide reductase 57 kD subunit; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like YP_001528636.1 PFAM: hydroxyethylthiazole kinase; KEGG: dps:DP0499 probable hydroxyethylthiazole kinase YP_001528637.1 PFAM: MOSC domain containing protein; KEGG: drm:Dred_2266 MOSC domain containing protein YP_001528638.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: dps:DP1242 hypothetical protein YP_001528639.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001528640.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gur:Gura_3945 O-acetylhomoserine aminocarboxypropyltransferase YP_001528641.1 KEGG: drm:Dred_2737 methyl-accepting chemotaxis sensory transducer YP_001528642.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: chy:CHY_2198 putative FeS assembly protein YP_001528643.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: csc:Csac_2254 aminotransferase, class V YP_001528644.1 KEGG: gme:Gmet_2758 hypothetical protein YP_001528645.1 KEGG: mem:Memar_0762 hypothetical protein YP_001528646.1 PFAM: thioesterase superfamily protein; KEGG: swo:Swol_1130 uncharacterized aromatic compound catabolism protein YP_001528647.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfu:Sfum_0395 hypothetical protein YP_001528648.1 KEGG: pca:Pcar_2063 hypothetical protein YP_001528649.1 in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine YP_001528650.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_2177 major facilitator superfamily MFS_1 YP_001528652.1 KEGG: syx:SynWH7803_2452 hypothetical membrane protein YP_001528653.1 PFAM: type IV pilus assembly PilZ YP_001528654.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sat:SYN_02533 metallo-beta-lactamase superfamily YP_001528655.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sat:SYN_01166 Fe-S oxidoreductase YP_001528656.1 PFAM: FAD linked oxidase domain protein; KEGG: sat:SYN_01167 (S)-2-hydroxy-acid oxidase chain D YP_001528657.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: afu:AF1851 hypothetical protein YP_001528658.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ade:Adeh_4081 heat shock protein DnaJ-like YP_001528659.1 PFAM: peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: bbr:BB4985 hypothetical protein YP_001528660.1 KEGG: pca:Pcar_1006 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_001528661.1 PFAM: protein of unknown function UPF0079; KEGG: gme:Gmet_1881 hypothetical protein YP_001528662.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: gme:Gmet_1883 hypothetical protein YP_001528663.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001528664.1 PFAM: protein of unknown function UPF0054; KEGG: gur:Gura_1782 protein of unknown function UPF0054 YP_001528665.1 KEGG: pca:Pcar_1232 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region YP_001528666.1 PFAM: PhoH family protein; KEGG: sfu:Sfum_2163 PhoH family protein YP_001528667.1 PFAM: Colicin V production protein; KEGG: pca:Pcar_2681 CvpA family protein YP_001528668.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: afw:Anae109_2716 MazG family protein YP_001528669.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001528670.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001528673.1 KEGG: fjo:Fjoh_1577 hypothetical protein YP_001528674.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: det:DET1295 hypothetical protein YP_001528676.1 KEGG: gur:Gura_1982 aspartyl protease-like protein YP_001528677.1 PFAM: Two component regulator propeller; KEGG: sus:Acid_4777 histidine kinase YP_001528678.1 PFAM: beta-lactamase domain protein; KEGG: msm:MSMEG_4047 dihydropteroate synthase YP_001528679.1 PFAM: Protein of unknown function CGGC region; KEGG: mba:Mbar_A3666 hypothetical protein YP_001528680.1 PFAM: protein of unknown function DUF1568; SMART: Chromosomal replication initiator DnaA domain; KEGG: pca:Pcar_1084 transposase and inactivated derivatives YP_001528681.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dde:Dde_0326 transmembrane transport proteins-like YP_001528682.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_0325 hypothetical protein YP_001528683.1 KEGG: hch:HCH_00750 chromosome segregation ATPase YP_001528684.1 KEGG: ilo:IL2159 hypothetical protein YP_001528687.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: amt:Amet_0347 ATP synthase F0, C subunit YP_001528688.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: amt:Amet_0346 ATP synthase F0, A subunit YP_001528689.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: amt:Amet_0348 ATP synthase F0, C subunit YP_001528690.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sat:SYN_00549 ATP synthase B chain, sodium ion specific YP_001528691.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sfu:Sfum_2586 H+-transporting two-sector ATPase, B/B' subunit YP_001528692.1 PFAM: regulatory protein TetR; KEGG: sru:SRU_0477 transcriptional regulator, TetR family protein YP_001528693.1 PFAM: outer membrane efflux protein; KEGG: ade:Adeh_1477 outer membrane efflux protein YP_001528694.1 PFAM: secretion protein HlyD family protein; KEGG: plt:Plut_1082 putative ABC transport system, lipoprotein YP_001528695.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3463 ABC transporter-related protein YP_001528696.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_0894 ABC transporter related YP_001528697.1 PFAM: ABC-2 type transporter; KEGG: rca:Rcas_2358 ABC-2 type transporter YP_001528698.1 PFAM: ABC-2 type transporter; KEGG: gme:Gmet_3460 ABC-2 YP_001528699.1 KEGG: gfo:GFO_2160 hypothetical protein YP_001528701.1 PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_1879 hypothetical protein YP_001528702.1 KEGG: plt:Plut_1880 ORF H1617 YP_001528703.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_B4936 regulatory protein, TetR YP_001528704.1 PFAM: Acetoacetate decarboxylase YP_001528705.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: afu:AF1175 acyl-CoA dehydrogenase, short chain-specific (AcdS) YP_001528706.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: afu:AF1175 acyl-CoA dehydrogenase, short chain-specific (AcdS) YP_001528707.1 KEGG: mms:mma_3158 hypothetical protein YP_001528708.1 KEGG: csa:Csal_1368 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_001528709.1 PFAM: restriction modification system DNA specificity domain; KEGG: shm:Shewmr7_2862 restriction modification system DNA specificity domain YP_001528710.1 PFAM: N-6 DNA methylase; KEGG: ppu:PP_4741 type I restriction-modification system, M subunit YP_001528711.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: pap:PSPA7_6047 type I restriction-modification system, R subunit YP_001528712.1 KEGG: gtn:GTNG_1594 hypothetical protein YP_001528713.1 KEGG: pto:PTO0033 hypothetical protein YP_001528714.1 PFAM: Domain of unknown function DUF1814; KEGG: sdn:Sden_0300 hypothetical protein YP_001528715.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: neu:NE0251 hypothetical protein YP_001528716.1 KEGG: sat:SYN_02911 ATPase protein YP_001528717.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001528718.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: vco:VC0395_A0719 putative glutamate decarboxylase YP_001528719.1 PFAM: amino acid-binding ACT domain protein; KEGG: ppd:Ppro_1670 amino acid-binding ACT domain protein YP_001528720.1 PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_4069 extracellular ligand-binding receptor YP_001528721.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_4070 inner-membrane translocator YP_001528722.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_4071 inner-membrane translocator YP_001528723.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2127 ABC transporter related YP_001528724.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1730 branched-chain amino acid ABC transporter, ATP-binding protein YP_001528725.1 KEGG: gur:Gura_2124 phenylacetate--CoA ligase YP_001528726.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sfu:Sfum_2881 HNH endonuclease YP_001528728.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mgm:Mmc1_2140 redoxin domain protein YP_001528729.1 TIGRFAM: YD repeat protein; PFAM: NHL repeat containing protein; YD repeat-containing protein; Ig family protein; KEGG: sfu:Sfum_4063 NHL repeat containing protein YP_001528731.1 PFAM: protein of unknown function DUF1568; SMART: Chromosomal replication initiator DnaA domain; KEGG: pca:Pcar_1084 transposase and inactivated derivatives YP_001528732.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_2705 molybdopterin oxidoreductase Fe4s4 region YP_001528733.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfu:Sfum_2706 formate dehydrogenase, alpha subunit YP_001528734.1 PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_02257 1,4-alpha-glucan branching enzyme YP_001528735.1 PFAM: Starch synthase catalytic domain protein; KEGG: sat:SYN_02854 alpha-amylase YP_001528736.1 KEGG: gme:Gmet_3159 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001528737.1 KEGG: pat:Patl_2143 glycoside hydrolase, family 13-like YP_001528738.1 PFAM: alpha amylase catalytic region; Amylo-alpha-16-glucosidase; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_00295 glycogen debranching enzyme/alpha-amylase YP_001528739.1 PFAM: type IV pilus assembly PilZ; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein YP_001528740.1 KEGG: pin:Ping_2533 hypothetical protein YP_001528741.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bpd:BURPS668_0652 putative acetyl-hydrolase YP_001528742.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rci:RRC462 putative Na(+)/H(+) antiporter YP_001528743.1 PFAM: zinc/iron permease; KEGG: sat:SYN_02130 zinc uptake transporter YP_001528744.1 KEGG: sat:SYN_00353 hypothetical membrane protein YP_001528745.1 PFAM: protein of unknown function DUF486; KEGG: asa:ASA_1635 hypothetical protein YP_001528746.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: par:Psyc_1275 hypothetical protein YP_001528747.1 PFAM: phosphofructokinase; KEGG: dps:DP1909 probable 6-phosphofructokinase 1 YP_001528748.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1435 radical SAM domain protein YP_001528749.1 KEGG: aci:ACIAD1784 hypothetical protein YP_001528753.1 KEGG: sfu:Sfum_1666 tRNA pseudouridine synthase A YP_001528754.1 KEGG: bja:blr2985 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001528755.1 PFAM: magnesium chelatase ChlI subunit; response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU0841 sigma-54 dependent DNA-binding response regulator YP_001528758.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: gsu:GSU1290 chemotaxis protein CheA YP_001528759.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: gur:Gura_2779 methyl-accepting chemotaxis sensory transducer YP_001528760.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: gur:Gura_2779 methyl-accepting chemotaxis sensory transducer YP_001528761.1 PFAM: CheW domain protein; KEGG: gur:Gura_2991 putative CheW protein YP_001528762.1 PFAM: MCP methyltransferase CheR-type; KEGG: gur:Gura_2984 protein-glutamate O-methyltransferase YP_001528763.1 PFAM: response regulator receiver; KEGG: gsu:GSU1286 chemotaxis protein CheY YP_001528764.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: gur:Gura_2983 CheD, stimulates methylation of MCP protein YP_001528765.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gsu:GSU1145 protein-glutamate methylesterase YP_001528766.1 KEGG: ade:Adeh_1376 methyl-accepting chemotaxis sensory transducer YP_001528767.1 PFAM: response regulator receiver; KEGG: mgm:Mmc1_0631 response regulator receiver protein YP_001528768.1 KEGG: vch:VC1295 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_001528769.1 KEGG: dar:Daro_0041 hypothetical protein YP_001528770.1 PFAM: type IV pilus assembly PilZ; KEGG: ppd:Ppro_3538 type IV pilus assembly PilZ YP_001528771.1 PFAM: formate/nitrite transporter; response regulator receiver; KEGG: rru:Rru_A0311 formate/nitrite transporter YP_001528772.1 PFAM: response regulator receiver; KEGG: gsu:GSU0598 sigma-54 dependent DNA-binding response regulator YP_001528773.1 PFAM: response regulator receiver; KEGG: gur:Gura_3647 two component, sigma-54 specific, transcriptional regulator, fis family YP_001528774.1 PFAM: response regulator receiver; KEGG: gsu:GSU0598 sigma-54 dependent DNA-binding response regulator YP_001528775.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_1057 histidine kinase YP_001528777.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2458 radical SAM domain protein YP_001528778.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: eba:ebA748 benzoyl CoA reductase subunit YP_001528779.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cbf:CLI_2245 putative R-2-hydroxyglutaryl-CoA dehydratase subunit YP_001528780.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1005 CoA enzyme activase YP_001528781.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: afu:AF1959 (R)-hydroxyglutaryl-CoA dehydratase activator (HgdC) YP_001528782.1 PFAM: helix-turn-helix domain protein; KEGG: cte:CT0913 hypothetical protein YP_001528783.1 PFAM: HipA domain protein; KEGG: reu:Reut_C6144 hypothetical protein YP_001528784.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_1123 enoyl-CoA hydratase/isomerase YP_001528787.1 KEGG: bbt:BBta_6746 hypothetical protein YP_001528788.1 KEGG: mhu:Mhun_1796 hypothetical protein YP_001528789.1 KEGG: sbm:Shew185_2181 hypothetical protein YP_001528790.1 KEGG: rca:Rcas_2229 type III restriction system methylase YP_001528791.1 PFAM: Eco57I restriction endonuclease; KEGG: rca:Rcas_2228 site-specific DNA-methyltransferase (adenine-specific) YP_001528792.1 KEGG: rca:Rcas_2226 putative uncharacterized restriction enzyme YP_001528793.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cno:NT01CX_1220 pyruvate formate-lyase YP_001528794.1 PFAM: Tetratricopeptide TPR_2 repeat protein YP_001528795.1 KEGG: sfu:Sfum_0290 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001528796.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0438 hypothetical protein YP_001528797.1 KEGG: aba:Acid345_0648 hypothetical protein YP_001528798.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: tdn:Tmden_1179 tellurite resistance protein TehB YP_001528799.1 PFAM: thioesterase superfamily protein; KEGG: reh:H16_A1532 uncharacterized protein, possibly involved in aromatic compounds catabolism YP_001528800.1 PFAM: response regulator receiver; KEGG: pat:Patl_3677 response regulator receiver protein YP_001528802.1 KEGG: gsu:GSU1339 hypothetical protein YP_001528803.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_0082 protein of unknown function DUF214 YP_001528804.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1341 ABC transporter, ATP-binding protein YP_001528806.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ecj:JW1145 5-methylcytosine-specific restriction endonuclease B YP_001528807.1 KEGG: bch:Bcen2424_2375 hypothetical protein YP_001528808.1 PFAM: Abortive infection protein; KEGG: tcx:Tcr_1073 abortive infection protein YP_001528809.1 KEGG: sil:SPO3605 hypothetical protein YP_001528810.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_0630 prevent-host-death family protein YP_001528811.1 KEGG: gur:Gura_0629 nucleic acid-binding protein contains PIN domain-like protein YP_001528812.1 KEGG: sde:Sde_0048 methyl-accepting chemotaxis sensory transducer YP_001528813.1 PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: cvi:CV_2261 probable acetylserotonin O-methyltransferase YP_001528814.1 KEGG: kpn:KPN_04384 Zn-binding periplasmic protein YP_001528815.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2447 transcriptional regulator, TetR family YP_001528816.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: gtn:GTNG_1338 probable acyl-CoA dehydrogenase YP_001528817.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cno:NT01CX_2368 R-phenyllactate dehydratase small subunit YP_001528818.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cbf:CLI_3460 R-phenyllactate dehydratase, B subunit YP_001528819.1 PFAM: Thiolase; KEGG: rha:RHA1_ro03005 probable sterol carrier protein YP_001528820.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pla:Plav_1779 2-nitropropane dioxygenase NPD YP_001528821.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: abo:ABO_1264 acyl-CoA dehydrogenase YP_001528822.1 KEGG: pca:Pcar_1926 lipoprotein, putative YP_001528823.1 PFAM: helix-turn-helix domain protein; KEGG: det:DET1555 DNA-binding protein YP_001528824.1 PFAM: restriction endonuclease BamHI; KEGG: hch:HCH_10009 BamHI-like type II restriction endonuclease YP_001528825.1 PFAM: putative RNA methylase; KEGG: afw:Anae109_4223 DNA methylase N-4/N-6 domain protein YP_001528826.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: hch:HCH_02488 BamHI-like site-specific methyltransferase YP_001528827.1 KEGG: aha:AHA_3428 oligopeptide transport ATP-binding protein AppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001528828.1 KEGG: vfi:VF0691 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001528829.1 PFAM: extracellular solute-binding protein family 5; KEGG: aha:AHA_2859 ABC-type oligopeptide transport system, periplasmic component YP_001528830.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aha:AHA_3431 inner membrane ABC transporter permease protein YejE YP_001528831.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aha:AHA_3432 oligopeptide transport system permease protein OppB YP_001528832.1 PFAM: ribosomal protein S9; KEGG: pca:Pcar_1899 ribosomal protein S9 YP_001528833.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001528835.1 KEGG: mxa:MXAN_5835 hypothetical protein YP_001528836.1 PFAM: PGAP1 family protein; KEGG: hch:HCH_06860 predicted acetyltransferase and hydrolase with the alpha/beta hydrolase fold YP_001528838.1 PFAM: helix-turn-helix- domain containing protein AraC type; glycoside hydrolase family 2 sugar binding; KEGG: bld:BLi00865 YfiF YP_001528839.1 PFAM: protein of unknown function UPF0057; KEGG: dps:DP1039 hypothetical protein YP_001528840.1 KEGG: pmy:Pmen_4511 hypothetical protein YP_001528841.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbu:CBU_0547 TPR domain protein YP_001528842.1 PFAM: protein of unknown function DUF748; KEGG: mms:mma_3262 hypothetical protein YP_001528843.1 KEGG: bfs:BF4324 hypothetical protein YP_001528844.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001528845.1 PFAM: protein of unknown function DUF161; KEGG: mvn:Mevan_0817 protein of unknown function DUF161 YP_001528846.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP YP_001528847.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_001528848.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_001528849.1 TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: hha:Hhal_1732 L-2,4-diaminobutyric acid acetyltransferase YP_001528850.1 KEGG: dps:DP0602 probable porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_001528851.1 KEGG: gme:Gmet_3163 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001528852.1 PFAM: protein of unknown function DUF1458; KEGG: sfu:Sfum_1818 protein of unknown function DUF1458 YP_001528853.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001528854.1 KEGG: uma:UM04413.1 hypothetical protein YP_001528855.1 KEGG: saz:Sama_1639 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_001528856.1 KEGG: ppd:Ppro_0625 hypothetical protein YP_001528858.1 PFAM: Abortive infection protein; KEGG: dsy:DSY3814 hypothetical protein YP_001528859.1 PFAM: protein of unknown function DUF124; KEGG: saz:Sama_1571 hypothetical protein YP_001528860.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dps:DP2910 related to poly(A) polymerase YP_001528861.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dde:Dde_1511 cation diffusion facilitator family transporter YP_001528862.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_1891 conserved hypothetical integral membrane protein YP_001528863.1 KEGG: gfo:GFO_3196 membrane protein YP_001528864.1 KEGG: ter:Tery_1683 hypothetical protein YP_001528865.1 PFAM: Carbamoyltransferase; KEGG: hch:HCH_00212 predicted carbamoyl transferase, NodU family YP_001528866.1 PFAM: nuclear protein SET; KEGG: cmu:TC0110 hypothetical protein YP_001528867.1 KEGG: sat:SYN_02852 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: DEAD-like helicases YP_001528868.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001528869.1 PFAM: aldehyde dehydrogenase; KEGG: pmy:Pmen_4187 aldehyde dehydrogenase YP_001528870.1 KEGG: abo:ABO_1917 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_001528871.1 PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_2035 predicted glycosyltransferases YP_001528872.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_1811 glycosyl transferase, family 2 YP_001528873.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2273 radical SAM domain protein YP_001528874.1 PFAM: MCP methyltransferase CheR-type; KEGG: dps:DP2645 related to chemotaxis protein methyltransferase CheR YP_001528875.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dps:DP2644 related to two-component system response regulator (Che family) YP_001528876.1 PFAM: CheW domain protein; KEGG: dps:DP2643 related to purine-binding chemotaxis protein CheW YP_001528877.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dps:DP2642 related to two-component system sensory/regulatory protein (Che family) YP_001528878.1 PFAM: peptidase U32; KEGG: pth:PTH_1069 collagenase and related proteases YP_001528881.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: mul:MUL_4561 oxidoreductase GMC-type YP_001528882.1 KEGG: lbj:LBJ_0467 hypothetical protein YP_001528884.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: drm:Dred_0636 adenylylsulfate reductase, beta subunit YP_001528885.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_001528886.1 KEGG: dps:DP1106 heterodisulfide reductase, subunit A (HdrA) YP_001528887.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dps:DP1107 fusion protein of heterodisulfide reductase, subunit A (HdrA) and hydrogenase, delta subunit (HydD) YP_001528888.1 KEGG: cte:CT0868 heterodisulfide reductase, putative YP_001528889.1 KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_001528890.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001528891.1 KEGG: noc:Noc_1736 hypothetical protein YP_001528893.1 KEGG: tac:Ta0198m Fe-S oxidoreductase YP_001528894.1 KEGG: gur:Gura_1170 hypothetical protein YP_001528895.1 KEGG: fno:Fnod_1704 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001528896.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfu:Sfum_3360 polysaccharide biosynthesis protein CapD YP_001528897.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: syn:slr0836 dTDP-glucose 4,6-dehydratase YP_001528898.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rxy:Rxyl_3121 glucose-1-phosphate thymidylyltransferase YP_001528899.1 KEGG: rxy:Rxyl_3120 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001528900.1 KEGG: rsq:Rsph17025_0255 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; adenylylsulfate kinase YP_001528901.1 KEGG: aeh:Mlg_1202 ABC-type uncharacterized transport system auxiliary component-like protein YP_001528902.1 PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_2751 possible ABC transport system periplasmic substrate-binding protein YP_001528903.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related YP_001528904.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: sun:SUN_1359 ABC transporter, permease YP_001528906.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate YP_001528907.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters YP_001528908.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor YP_001528910.1 KEGG: gur:Gura_0501 hypothetical protein YP_001528911.1 PFAM: beta-lactamase domain protein; KEGG: gur:Gura_0266 beta-lactamase domain protein YP_001528912.1 KEGG: sat:SYN_02855 hypothetical protein YP_001528913.1 PFAM: sodium:neurotransmitter symporter; KEGG: tme:Tmel_1300 sodium:neurotransmitter symporter YP_001528914.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sun:SUN_1850 hypothetical protein YP_001528915.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases; KEGG: sat:SYN_00427 ATP-dependent DNA helicase YP_001528916.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_4099 cobyrinic acid a,c-diamide synthase YP_001528917.1 PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32 YP_001528918.1 PFAM: histone family protein DNA-binding protein; KEGG: sfu:Sfum_0002 histone family protein DNA-binding protein YP_001528919.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: sat:SYN_01551 general secretion pathway protein G YP_001528920.1 KEGG: gme:Gmet_3368 general secretion pathway protein H YP_001528921.1 KEGG: sat:SYN_03707 hypothetical membrane protein YP_001528922.1 KEGG: mxa:MXAN_2506 putative general secretion pathway protein J YP_001528923.1 KEGG: sat:SYN_01554 general secretory pathway protein K YP_001528924.1 PFAM: Fimbrial assembly family protein; KEGG: afw:Anae109_0722 fimbrial assembly family protein YP_001528925.1 KEGG: sat:SYN_01556 hypothetical membrane protein YP_001528927.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_2515 general secretion pathway protein C YP_001528928.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: gme:Gmet_3364 type II and III secretion system protein:NolW-like YP_001528929.1 KEGG: sat:SYN_01549 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase YP_001528930.1 PFAM: protein of unknown function DUF37; KEGG: ppd:Ppro_1850 protein of unknown function DUF37 YP_001528931.1 KEGG: ppd:Ppro_1849 hypothetical protein YP_001528932.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sat:SYN_01550 general secretion pathway protein F YP_001528935.1 PFAM: protein of unknown function DUF1566; KEGG: aba:Acid345_4648 response regulator receiver protein YP_001528936.1 KEGG: maq:Maqu_2338 hypothetical protein YP_001528937.1 KEGG: afu:AF1687 hypothetical protein YP_001528938.1 PFAM: type IV pilus assembly PilZ YP_001528939.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_0374 rhodanese-like YP_001528940.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: sal:Sala_2163 carboxymuconolactone decarboxylase YP_001528941.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: sat:SYN_02553 exodeoxyribonuclease V gamma chain YP_001528942.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: gme:Gmet_1893 exodeoxyribonuclease V, beta subunit YP_001528943.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: gur:Gura_0578 exodeoxyribonuclease V, alpha subunit YP_001528944.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: plt:Plut_1017 ribose/galactose isomerase YP_001528945.1 PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation YP_001528946.1 PFAM: response regulator receiver; KEGG: ppd:Ppro_0087 response regulator receiver protein YP_001528947.1 PFAM: peptidase M23B; KEGG: amt:Amet_3152 peptidase M23B YP_001528948.1 KEGG: sfu:Sfum_2845 temperature sensitive supressor-like YP_001528949.1 KEGG: aba:Acid345_0809 hypothetical protein YP_001528950.1 KEGG: sfu:Sfum_2105 citrate (Si)-synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_001528951.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: mbu:Mbur_0890 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein YP_001528952.1 KEGG: mbu:Mbur_0889 2-oxoacid--acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding YP_001528953.1 PFAM: regulatory protein TetR; KEGG: bay:RBAM_010760 hypothetical protein YP_001528954.1 KEGG: tte:TTE0161 Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_001528955.1 PFAM: amidohydrolase 2; KEGG: cth:Cthe_1291 amidohydrolase 2 YP_001528956.1 PFAM: aminotransferase class-III; KEGG: ttj:TTHA0909 probable ornithine aminotransferase YP_001528957.1 PFAM: aminotransferase class-III; KEGG: afu:AF1815 acetylornithine aminotransferase YP_001528958.1 PFAM: NADPH-dependent FMN reductase; KEGG: mth:MTH135 hypothetical protein YP_001528959.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY1516 putative anaerobic dehydrogenase YP_001528960.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: psa:PST_2758 oxidoreductase, molybdopterin-binding YP_001528962.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001528963.1 PFAM: protein of unknown function UPF0044; KEGG: mgm:Mmc1_3700 protein of unknown function UPF0044 YP_001528965.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aci:ACIAD3531 hypothetical protein; putative conserved domain GGDEF YP_001528966.1 PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein YP_001528967.1 KEGG: lma:LmjF22.0480 hypothetical protein, conserved YP_001528968.1 KEGG: cno:NT01CX_1071 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_001528969.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1203 hypothetical protein YP_001528970.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gur:Gura_1598 enoyl-CoA hydratase/isomerase YP_001528971.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0732 TPR repeat YP_001528972.1 KEGG: cdf:CD3513 pilin YP_001528974.1 PFAM: type II secretion system protein E; response regulator receiver; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1231 L(+)-tartrate dehydratase subunit beta (L-TTD beta) YP_001528975.1 KEGG: mgm:Mmc1_1510 Hpt protein YP_001528976.1 PFAM: response regulator receiver; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_001528977.1 KEGG: cph:Cpha266_0617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein YP_001528978.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: psa:PST_2915 transporter, sodium/sulfate symporter family YP_001528979.1 PFAM: NERD domain protein; KEGG: pin:Ping_2685 NERD domain protein YP_001528980.1 PFAM: Ankyrin; KEGG: spu:594371 similar to ankyrin 2,3/unc44 YP_001528981.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: aminotransferase class IV; Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: sfu:Sfum_3709 para-aminobenzoate synthase, subunit I YP_001528982.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sfu:Sfum_3710 glutamine amidotransferase of anthranilate synthase YP_001528983.1 KEGG: sat:SYN_00783 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001528984.1 PFAM: heat shock protein Hsp20; KEGG: sat:SYN_00784 small heat shock protein YP_001528985.1 KEGG: vpa:VPA1684 alkyl hydroperoxide reductase, subunit F YP_001528986.1 PFAM: protein of unknown function UPF0118; KEGG: vch:VC0624 hypothetical protein YP_001528987.1 PFAM: cytochrome c assembly protein; KEGG: sfu:Sfum_0695 cytochrome c assembly protein YP_001528988.1 PFAM: ResB family protein; KEGG: gsu:GSU0613 ResB-like family protein YP_001528989.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sus:Acid_0066 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001528990.1 KEGG: dsy:DSY3156 hypothetical protein YP_001528991.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_001528992.1 KEGG: cpf:CPF_0981 hypothetical protein YP_001528993.1 KEGG: sme:SMa1478 putative methyltransferase YP_001528994.1 PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_2116 corrinoid methyltransferase, Methanosarcina species YP_001528995.1 PFAM: trimethylamine methyltransferase; KEGG: dsy:DSY4971 hypothetical protein YP_001528996.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pde:Pden_4889 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001528997.1 PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: abo:ABO_2149 transcriptional regulator, MarR family YP_001528998.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gme:Gmet_0936 HNH endonuclease YP_001528999.1 PFAM: RimK domain protein ATP-grasp; KEGG: mmw:Mmwyl1_0165 RimK domain protein ATP-grasp YP_001529000.1 KEGG: gur:Gura_3150 GTP-binding protein Era; TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; SMART: AAA ATPase YP_001529001.1 PFAM: GTP-binding protein HSR1-related; KEGG: gme:Gmet_0465 GTP-binding protein YP_001529002.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001529003.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dde:Dde_3567 phosphoribosyl-AMP cyclohydrolase YP_001529006.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dps:DP2705 related to methyl-accepting chemotaxis protein YP_001529007.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_2835 response regulator receiver domain protein (CheY-like) YP_001529008.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rci:LRC530 putative deoxyguanosinetriphosphate (dGTP) triphosphohydrolase YP_001529010.1 This protein performs the mismatch recognition step during the DNA repair process YP_001529011.1 PFAM: cell wall hydrolase/autolysin; KEGG: pca:Pcar_1511 N-acetylmuramoyl-L-alanine amidase-like YP_001529012.1 KEGG: sus:Acid_1246 hypothetical protein YP_001529014.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cdf:CD3459 transketolase, pyridine binding subunit YP_001529015.1 PFAM: Transketolase domain protein; KEGG: swo:Swol_0243 transketolase-like protein YP_001529016.1 PFAM: aminotransferase class-III; KEGG: hne:HNE_2418 glutamate-1-semialdehyde-2,1-aminomutase YP_001529018.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 alanine dehydrogenase YP_001529019.1 PFAM: regulatory protein TetR; KEGG: tbd:Tbd_1419 possible transcriptional regulator, TetR family YP_001529020.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gsu:GSU1891 response regulator YP_001529021.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_2835 response regulator receiver domain protein (CheY-like) YP_001529022.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dsy:DSY1101 hypothetical protein YP_001529024.1 PFAM: Carboxylesterase type B; KEGG: gtn:GTNG_3002 thermostable carboxylesterase Est50 YP_001529026.1 PFAM: lipase chaperone; KEGG: pap:PSPA7_2291 lipase modulator protein YP_001529027.1 PFAM: alpha/beta hydrolase fold; KEGG: vpa:VP1181 lactonizing lipase YP_001529028.1 PFAM: glycoside hydrolase family 31; KEGG: lga:LGAS_1729 alpha-glucosidase, family 31 of glycosyl hydrolase YP_001529029.1 KEGG: rpa:RPA3229 adenylate kinase YP_001529030.1 PFAM: peptidase M48 Ste24p; KEGG: azo:azo3558 hypothetical protein YP_001529031.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: azo:azo3559 hypothetical membrane protein YP_001529032.1 PFAM: response regulator receiver; KEGG: sat:SYN_00981 response regulator with a winged-helix DNA-binding domain YP_001529033.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: mem:Memar_0331 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein YP_001529034.1 PFAM: methylenetetrahydrofolate reductase; KEGG: sfu:Sfum_3130 methylenetetrahydrofolate reductase YP_001529035.1 KEGG: sfu:Sfum_3131 hypothetical protein YP_001529037.1 KEGG: spu:758655 similar to ankyrin 2,3/unc44 YP_001529039.1 TIGRFAM: YD repeat protein; PFAM: NHL repeat containing protein; YD repeat-containing protein; Ig family protein; KEGG: sfu:Sfum_4063 NHL repeat containing protein YP_001529040.1 KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, delta subunit YP_001529041.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_2154 methyl-viologen-reducing hydrogenase, delta subunit YP_001529042.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfu:Sfum_2149 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001529043.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: swo:Swol_0395 CoB--CoM heterodisulfide reductase YP_001529044.1 KEGG: drm:Dred_1325 heterodisulfide reductase, C subunit YP_001529045.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: aha:AHA_4207 acetyltransferase YP_001529046.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001529047.1 KEGG: gme:Gmet_2675 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001529048.1 PFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase YP_001529049.1 TIGRFAM: cysteinyl-tRNA synthetase; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia DALR; Cysteinyl-tRNA synthetase class Ia; KEGG: sat:SYN_00075 cysteinyl-tRNA synthetase YP_001529051.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_4046 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001529052.1 KEGG: gtn:GTNG_1869 iron-sulfur cluster binding protein YP_001529053.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pth:PTH_2603 hypothetical protein YP_001529054.1 PFAM: UvrD/REP helicase; KEGG: sen:SACE_3656 ATP-dependent DNA helicase YP_001529055.1 KEGG: sat:SYN_01357 hypothetical cytosolic protein YP_001529056.1 PFAM: Lytic transglycosylase catalytic; KEGG: sat:SYN_02783 soluble lytic murein transglycosylase YP_001529057.1 PFAM: Bacitracin resistance protein BacA; KEGG: swo:Swol_1266 putative undecaprenol kinase YP_001529058.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sfu:Sfum_0481 phosphomannomutase YP_001529059.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ppd:Ppro_2398 putative endoribonuclease L-PSP YP_001529060.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sat:SYN_00572 putative inhibitor of septum formation protein YP_001529061.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM YP_001529062.1 PFAM: alanine racemase domain protein; KEGG: sfu:Sfum_3628 alanine racemase domain protein YP_001529063.1 PFAM: protein of unknown function DUF208; KEGG: sat:SYN_02970 hypothetical cytosolic protein YP_001529064.1 PFAM: protein of unknown function DUF456; KEGG: pdi:BDI_1735 hypothetical protein YP_001529065.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rme:Rmet_5434 2-nitropropane dioxygenase, NPD YP_001529066.1 KEGG: sat:SYN_03033 hypothetical cytosolic protein YP_001529067.1 KEGG: afw:Anae109_1047 hypothetical protein YP_001529069.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00713550 TPR Domain containing protein Pfam: Pkinase Pkinase_Tyr TPR_1 TPR_2 LMP PROSITE: TPR TPR_REGION PROTEIN_KINASE_DOM YP_001529070.1 KEGG: pdi:BDI_1474 hypothetical protein YP_001529071.1 PFAM: DNA polymerase III delta; KEGG: sat:SYN_01765 DNA polymerase III, delta subunit YP_001529072.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sus:Acid_5351 prolipoprotein diacylglyceryl transferase YP_001529073.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: sat:SYN_01453 lipoprotein signal peptidase YP_001529074.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: sfu:Sfum_0122 isoleucyl-tRNA synthetase YP_001529075.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: gsu:GSU3463 glucose-inhibited division protein B YP_001529076.1 PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: syn:slr1888 hypothetical protein YP_001529077.1 KEGG: mxa:MXAN_6767 hypothetical protein YP_001529078.1 KEGG: mms:mma_0369 hypothetical protein YP_001529079.1 KEGG: hch:HCH_03136 hypothetical protein YP_001529080.1 KEGG: dra:DR_1735 hypothetical protein YP_001529081.1 PFAM: Radical SAM domain protein; KEGG: mem:Memar_0879 radical SAM domain protein YP_001529082.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rci:RCIX739 glycerate dehydrogenase YP_001529083.1 KEGG: lpf:lpl1943 hypothetical protein YP_001529084.1 PFAM: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein YP_001529085.1 PFAM: Lipocalin family protein; KEGG: sat:SYN_00666 lipoprotein YP_001529086.1 KEGG: gtn:GTNG_1918 putative regulator YP_001529087.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ilo:IL1827 acyl-CoA synthetase YP_001529088.1 PFAM: protein of unknown function DUF985; KEGG: xom:XOO_3007 hypothetical protein YP_001529089.1 PFAM: protein of unknown function DUF188; KEGG: bba:Bd1212 hypothetical protein YP_001529090.1 KEGG: mst:Msp_0062 hypothetical protein YP_001529091.1 KEGG: cbd:COXBU7E912_0066 homoserine dehydrogenase, NAD binding domain YP_001529095.1 PFAM: Integrase catalytic region; KEGG: vvy:VV1868 transposase and inactivated derivative YP_001529096.1 KEGG: vvy:VV1869 transposase and inactivated derivative YP_001529098.1 PFAM: acriflavin resistance protein; KEGG: chu:CHU_2513 cation/multidrug efflux pump YP_001529099.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sru:SRU_0926 efflux transporter, RND family, MFP subunit YP_001529100.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0364 outer membrane channel protein YP_001529101.1 PFAM: regulatory protein TetR; KEGG: tfu:Tfu_2755 putative TetR-family transcriptional regulator YP_001529102.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001529103.1 KEGG: gme:Gmet_1056 hypothetical protein YP_001529104.1 PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS YP_001529105.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sfu:Sfum_0393 protein of unknown function DUF224, cysteine-rich region domain protein YP_001529106.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_3058 radical SAM domain protein YP_001529107.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001529108.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_3056 radical SAM domain protein YP_001529109.1 PFAM: AAA ATPase central domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: sfu:Sfum_3055 ATPase AAA-2 domain protein YP_001529110.1 KEGG: pau:PA14_53310 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; type IV pilus assembly PilZ; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001529111.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: tma:TM1465 cob(I)alamin adenosyltransferase YP_001529112.1 PFAM: cobalbumin biosynthesis protein; KEGG: cch:Cag_0846 cobalamin biosynthesis protein CobP YP_001529113.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pca:Pcar_0485 related to cobalamin synthase (CobS) YP_001529114.1 PFAM: aminotransferase class I and II; KEGG: gme:Gmet_0487 L-threonine-O-3-phosphate decarboxylase YP_001529115.1 PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121 YP_001529116.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: stm:STM2034 synthesis of vitamin B12 adenosyl cobalamide precursor YP_001529117.1 PFAM: alpha/beta hydrolase fold; KEGG: dsy:DSY2637 hypothetical protein YP_001529118.1 KEGG: pca:Pcar_1655 hypothetical protein YP_001529119.1 KEGG: pca:Pcar_1654 hypothetical protein YP_001529124.1 PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_0413 uncharacterized domain YP_001529125.1 PFAM: regulatory protein TetR; KEGG: mac:MA2902 transcriptional regulator, TetR family YP_001529127.1 PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: sat:SYN_01404 general secretion pathway protein E YP_001529129.1 PFAM: CoA-binding domain protein; KEGG: sat:SYN_00748 acetyl-CoA synthetase beta subunit YP_001529130.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2047 acetoacetyl-CoA synthase YP_001529131.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: esa:ESA_01602 hypothetical protein YP_001529132.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_1977 short-chain dehydrogenase/reductase SDR YP_001529133.1 KEGG: pca:Pcar_0843 hypothetical protein YP_001529134.1 KEGG: cbo:CBO0434 membrane protein YP_001529135.1 PFAM: DNA polymerase beta domain protein region; KEGG: sat:SYN_01114 nucleotidyltransferase YP_001529136.1 PFAM: protein of unknown function DUF1232 YP_001529140.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1024 sigma-54 specific transcriptional regulator, fis family YP_001529141.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: vvy:VV0265 type I site-specific restriction-modification system, R (restriction) subunit YP_001529142.1 PFAM: N-6 DNA methylase; KEGG: ftn:FTN_1152 type I restriction-modification system, subunit M (methyltransferase) YP_001529143.1 PFAM: restriction modification system DNA specificity domain; KEGG: xcv:XCV0510 type I site-specific deoxyribonuclease (specificity subunit) YP_001529144.1 PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: ftn:FTN_1152 type I restriction-modification system, subunit M (methyltransferase) YP_001529146.1 KEGG: bvi:Bcep1808_6257 hypothetical protein YP_001529147.1 KEGG: sth:STH615 hypothetical protein YP_001529148.1 PFAM: phosphatidylglycerophosphatase A; KEGG: csa:Csal_2580 phosphatidylglycerophosphatase YP_001529149.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: det:DET1456 2'-5' RNA ligase family protein YP_001529150.1 KEGG: rru:Rru_A2819 RecA DNA recombination protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001529151.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001529152.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gur:Gura_4256 cobyrinic acid a,c-diamide synthase YP_001529154.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1806 radical SAM domain protein YP_001529155.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_3088 radical SAM domain protein YP_001529156.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB12434 O-GlcNAc transferase YP_001529157.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB12434 O-GlcNAc transferase YP_001529158.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfu:Sfum_3087 amidohydrolase YP_001529159.1 KEGG: sfu:Sfum_3086 protein of unknown function DUF178 YP_001529160.1 PFAM: protein of unknown function DUF191; KEGG: gme:Gmet_3380 protein of unknown function DUF191 YP_001529161.1 PFAM: purine or other phosphorylase family 1; KEGG: gme:Gmet_3381 purine and other phosphorylase, family 1 YP_001529162.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sat:SYN_00532 UDP-glucose 6-dehydrogenase YP_001529163.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_001529164.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sfu:Sfum_3362 GDP-mannose 4,6-dehydratase YP_001529165.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mba:Mbar_A0035 GDP-fucose synthetase YP_001529166.1 KEGG: gsu:GSU0625 hypothetical protein YP_001529167.1 PFAM: ABC-2 type transporter; KEGG: maq:Maqu_2634 ABC-2 type transporter YP_001529168.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_2633 ABC transporter related YP_001529170.1 KEGG: cbe:Cbei_2590 capsular polysaccharide biosynthesis -like protein YP_001529171.1 KEGG: dsy:DSY3314 hypothetical protein YP_001529172.1 PFAM: WxcM domain protein; KEGG: gur:Gura_3191 WxcM domain protein, C-terminal domain protein YP_001529173.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase YP_001529175.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sun:SUN_1530 hypothetical protein YP_001529176.1 PFAM: glycosyl transferase family 2; KEGG: lic:LIC12179 sugar transferase YP_001529178.1 PFAM: glycosyl transferase group 1; KEGG: wsu:WS2191 capsular polysaccharide synthesis enzyme Cap5I YP_001529179.1 PFAM: glycosyl transferase family 2; KEGG: cpe:CPE0501 capsular polysaccharide biosynthsis protein YP_001529181.1 PFAM: glycosyl transferase family 2; KEGG: cac:CAC2321 predicted glycosyltransferase YP_001529182.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase YP_001529183.1 PFAM: acyltransferase 3; KEGG: pdi:BDI_3012 acyltransferase YP_001529184.1 PFAM: glycosyl transferase family 4; KEGG: ppf:Pput_3937 glycosyl transferase, family 4 YP_001529185.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfu:Sfum_2184 polysaccharide biosynthesis protein CapD YP_001529186.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sfu:Sfum_2192 NAD-dependent epimerase/dehydratase YP_001529188.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: gme:Gmet_2211 acyl-CoA dehydrogenase-like YP_001529189.1 KEGG: rpc:RPC_4936 methylthioribose-1-phosphate isomerase; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001529191.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: mma:MM_0611 iron-sulfur cluster-binding protein YP_001529192.1 KEGG: pin:Ping_0551 hypothetical protein YP_001529195.1 KEGG: afu:AF2205 A. fulgidus predicted coding region AF2205 YP_001529196.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2447 transcriptional regulator, TetR family YP_001529197.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0267 rhodanese-like domain/cysteine-rich domain protein YP_001529198.1 KEGG: afu:AF1499 A. fulgidus predicted coding region AF1499 YP_001529199.1 KEGG: abo:ABO_1916 hypothetical protein YP_001529200.1 KEGG: osa:4332468 Os03g0284600 YP_001529201.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2915 periplasmic sensor signal transduction histidine kinase YP_001529202.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sme:SMb21561 putative two component response regulator protein YP_001529203.1 KEGG: gvi:glr0998 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001529204.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_0259 transcriptional regulator, TetR family YP_001529205.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bha:BH1951 hypothetical protein YP_001529206.1 KEGG: par:Psyc_1860 hypothetical protein YP_001529207.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sfu:Sfum_0296 thiamine pyrophosphate enzyme TPP binding domain protein YP_001529209.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: amt:Amet_1064 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001529210.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_3245 UspA domain protein YP_001529211.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_0650 UspA domain protein YP_001529212.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_1290 UspA domain protein YP_001529213.1 KEGG: sat:SYN_00288 uncharacterized protein involved in formate dehydrogenase formation YP_001529214.1 KEGG: dvl:Dvul_2364 formate dehydrogenase, beta subunit, putative YP_001529215.1 KEGG: sat:SYN_00603 formate dehydrogenase major subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_001529216.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sat:SYN_00602 formate dehydrogenase major subunit YP_001529217.1 KEGG: rba:RB2394 probable cytidylate kinase YP_001529218.1 PFAM: CBS domain containing protein YP_001529219.1 PFAM: Arsenical pump membrane protein; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: chy:CHY_1321 arsenic transporter family protein YP_001529220.1 TIGRFAM: PAS sensor protein; KEGG: mem:Memar_1136 multi-sensor signal transduction histidine kinase YP_001529221.1 PFAM: type IV pilus assembly PilZ YP_001529222.1 PFAM: CBS domain containing protein; response regulator receiver; KEGG: sfu:Sfum_0618 response regulator receiver protein YP_001529224.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mgm:Mmc1_1697 anion transporter YP_001529225.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0172 integral membrane sensor signal transduction histidine kinase YP_001529226.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0647 response regulator receiver protein YP_001529228.1 PFAM: response regulator receiver; sodium/sulphate symporter; KEGG: mgm:Mmc1_1697 anion transporter YP_001529229.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_001529230.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0631 integral membrane sensor signal transduction histidine kinase YP_001529231.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_001529232.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0632 response regulator receiver protein YP_001529233.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_001529234.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2833 protein of unknown function DUF81 YP_001529235.1 KEGG: dvl:Dvul_2832 hypothetical protein YP_001529236.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase YP_001529237.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_2828 integral membrane sensor signal transduction histidine kinase YP_001529238.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_001529239.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0632 response regulator receiver protein YP_001529240.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mgm:Mmc1_1697 anion transporter YP_001529241.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0403 response regulator receiver sensor signal transduction histidine kinase YP_001529242.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0657 response regulator receiver protein YP_001529243.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_001529244.1 PFAM: adenylylsulfate kinase; KEGG: syf:Synpcc7942_0939 adenylylsulfate kinase YP_001529245.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family YP_001529246.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase YP_001529247.1 PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_3435 protein serine/threonine phosphatases YP_001529248.1 PFAM: protein kinase; tyrosine protein kinase; CHASE2 domain protein; SMART: serine/threonine protein kinase; KEGG: rfr:Rfer_3942 serine/threonine protein kinase with CHASE2 sensor YP_001529251.1 PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_001529252.1 PFAM: histidine kinase HAMP region domain protein; KEGG: mgm:Mmc1_3601 periplasmic sensor signal transduction histidine kinase YP_001529254.1 PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein YP_001529255.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lil:LA3173 probable ATP-binding component of ABC transporter YP_001529257.1 KEGG: noc:Noc_1927 hypothetical protein YP_001529258.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvl:Dvul_2518 diguanylate cyclase YP_001529259.1 KEGG: pca:Pcar_2483 hypothetical protein YP_001529260.1 KEGG: aci:ACIAD1037 hypothetical protein; putative membrane protein YP_001529261.1 KEGG: det:DET1320 hypothetical protein YP_001529262.1 KEGG: pmy:Pmen_2244 membrane protein-like protein YP_001529263.1 KEGG: mem:Memar_1496 hypothetical protein YP_001529264.1 KEGG: sma:SAV7364 hypothetical protein YP_001529265.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001529266.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0417 transcriptional regulator, XRE family YP_001529267.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0416 plasmid maintenance system killer YP_001529269.1 KEGG: slo:Shew_1307 hypothetical protein YP_001529271.1 KEGG: ehi:123.t00019 conserved hypothetical protein Pfam: TolA PROSITE: GLN_RICH GLU_RICH YP_001529272.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: ppd:Ppro_0469 thiamine pyrophosphate enzyme domain protein TPP-binding YP_001529273.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sfu:Sfum_0115 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001529274.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0544 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit YP_001529275.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_0543 pyruvate/ketoisovalerate oxidoreductase, gamma subunit YP_001529276.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_1768 glycerol kinase YP_001529277.1 PFAM: dihydrodipicolinate reductase; KEGG: olu:OSTLU_40454 predicted protein YP_001529278.1 KEGG: mta:Moth_1905 hypothetical protein YP_001529279.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sat:SYN_00396 hypothetical cytosolic protein YP_001529280.1 KEGG: pcu:pc0826 hypothetical protein YP_001529281.1 PFAM: peptidase M16 domain protein; KEGG: ccr:CC_2638 peptidase, M16 family YP_001529282.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: olu:OSTLU_33390 cystathione gamma synthase YP_001529283.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dps:DP0628 metallo-beta-lactamase family protein YP_001529284.1 KEGG: dvl:Dvul_1788 hypothetical protein YP_001529286.1 KEGG: dvl:Dvul_1790 hypothetical protein YP_001529287.1 PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: dvl:Dvul_1791 type II and III secretion system protein YP_001529288.1 KEGG: dvl:Dvul_1803 phage tail X family protein YP_001529289.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dvl:Dvul_1792 type II secretion system protein E YP_001529290.1 PFAM: type II secretion system protein; KEGG: dvl:Dvul_1793 type II secretion system protein YP_001529291.1 KEGG: slo:Shew_0397 methylation site containing protein YP_001529292.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ade:Adeh_3075 tetratricopeptide repeat protein YP_001529293.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: cpr:CPR_2523 prolipoprotein diacylglyceryl transferase YP_001529294.1 KEGG: rfr:Rfer_3979 phosphoesterase, PA-phosphatase related YP_001529295.1 KEGG: dvl:Dvul_1798 hypothetical protein YP_001529297.1 KEGG: dvl:Dvul_1796 hypothetical protein YP_001529298.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gme:Gmet_2267 hypothetical protein YP_001529299.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: gme:Gmet_2266 electron transfer flavoprotein beta-subunit YP_001529300.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: gme:Gmet_2265 electron transfer flavoprotein, alpha subunit YP_001529301.1 KEGG: vvy:VV2095 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region YP_001529302.1 KEGG: cvi:CV_2497 probable two component system, transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region YP_001529303.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sat:SYN_00894 chaperone protein YP_001529304.1 KEGG: deh:cbdb_A770 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001529305.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: gur:Gura_3397 MJ0042 family finger-like protein YP_001529306.1 KEGG: sfu:Sfum_2138 hypothetical protein YP_001529307.1 KEGG: sfu:Sfum_4102 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein YP_001529308.1 KEGG: dps:DP2188 probable phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine--glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; protein of unknown function DUF201; ATP-grasp domain protein YP_001529309.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sth:STH75 putative translation factor YP_001529310.1 PFAM: beta-lactamase domain protein; KEGG: ape:APE_1559.1 hypothetical protein YP_001529311.1 PFAM: major facilitator superfamily MFS_1; KEGG: mem:Memar_0422 major facilitator superfamily MFS_1 YP_001529312.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein YP_001529313.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gme:Gmet_1248 permease YjgP/YjgQ YP_001529314.1 KEGG: sus:Acid_6497 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; Three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_001529315.1 KEGG: stt:t4350 Vi polysaccharide biosynthesis protein YP_001529316.1 TIGRFAM: methyltransferase FkbM family; KEGG: rba:RB9235 probable nodulation protein NoeI-putative methyltransferase YP_001529317.1 PFAM: O-antigen polymerase; KEGG: cha:CHAB381_0658 O-antigen polymerase family YP_001529318.1 PFAM: glycosyl transferase group 1; KEGG: mag:amb1267 glycosyltransferase YP_001529319.1 KEGG: aci:ACIAD0599 hypothetical protein YP_001529320.1 KEGG: dde:Dde_0430 glycosyltransferase involved in cell wall biogenesis-like YP_001529321.1 PFAM: glycosyl transferase family 39; KEGG: sme:SMc02383 hypothetical protein YP_001529322.1 PFAM: GtrA family protein YP_001529323.1 PFAM: glycosyl transferase family 2; KEGG: mma:MM_2221 glycosyltransferase YP_001529324.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00130 glycosyltransferase YP_001529325.1 KEGG: sat:SYN_00129 nucleoside-diphosphate-sugar epimerase YP_001529326.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase YP_001529327.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001529330.1 KEGG: dps:DP2854 hypothetical protein YP_001529331.1 PFAM: GTP-binding protein HSR1-related; KEGG: dps:DP2853 hypothetical protein YP_001529332.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001529333.1 PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein YP_001529334.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001529335.1 PFAM: regulatory protein MarR; KEGG: pth:PTH_0020 transcriptional regulator YP_001529336.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1262 NADH oxidase (NoxB-2) YP_001529337.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001529338.1 KEGG: tbd:Tbd_2628 hypothetical protein YP_001529339.1 PFAM: thioesterase superfamily protein; KEGG: pca:Pcar_2516 thioesterase family protein YP_001529340.1 PFAM: aminoglycoside phosphotransferase; KEGG: pmy:Pmen_2075 aminoglycoside phosphotransferase YP_001529341.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pcr:Pcryo_0664 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001529342.1 KEGG: sfu:Sfum_2566 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_001529343.1 KEGG: ppd:Ppro_2466 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001529344.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: mav:MAV_0399 putative glutamate--cysteine ligase YP_001529345.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pat:Patl_3613 glutaredoxin 3 YP_001529346.1 PFAM: ferredoxin; KEGG: chy:CHY_1224 iron-sulfur cluster binding protein YP_001529348.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; domain of unknown function DUF1731; KEGG: sfu:Sfum_3215 NAD-dependent epimerase/dehydratase YP_001529349.1 PFAM: beta-lactamase domain protein; KEGG: bja:blr3078 hypothetical protein YP_001529350.1 PFAM: beta-lactamase domain protein; KEGG: abo:ABO_0981 hypothetical protein YP_001529351.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_0339 sigma54 specific transcriptional regulator with PAS sensor, fis family YP_001529353.1 PFAM: Thiolase; KEGG: bch:Bcen2424_5827 thiolase YP_001529354.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_4204 AMP-dependent synthetase and ligase YP_001529355.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD0706 putative reductase YP_001529356.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: lin:lin1621 similar to ketoacyl reductases YP_001529357.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001529358.1 KEGG: gur:Gura_0240 hypothetical protein YP_001529359.1 KEGG: syf:Synpcc7942_1212 hypothetical protein YP_001529360.1 KEGG: cac:CAC1202 hypothetical protein YP_001529361.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_6986 radical SAM domain protein YP_001529362.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sat:SYN_01179 dinitrogenase iron-molybdenum cofactor protein YP_001529364.1 KEGG: sfu:Sfum_0453 hypothetical protein YP_001529365.1 KEGG: rle:pRL120370 putative transposase for insertion sequence element YP_001529366.1 KEGG: sfu:Sfum_3190 iron-sulfur cluster binding protein YP_001529367.1 KEGG: sat:SYN_00175 metal-dependent hydrolase YP_001529368.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pca:Pcar_3080 ribosomal protein L11 methyltransferase YP_001529369.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_2761 cobyrinic acid a,c-diamide synthase YP_001529370.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pca:Pcar_0499 hypothetical protein YP_001529371.1 KEGG: gme:Gmet_1954 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_001529372.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU0867 ubiquinone/menaquinone biosynthesis methyltransferase YP_001529373.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001529374.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase YP_001529375.1 PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein YP_001529376.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: gur:Gura_2150 dihydroorotate dehydrogenase family protein YP_001529377.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_1087 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_001529378.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pmy:Pmen_3340 molybdopterin dinucleotide-binding region YP_001529379.1 PFAM: thioesterase superfamily protein; KEGG: psb:Psyr_0256 phenylacetic acid degradation-related protein YP_001529380.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rru:Rru_A1046 AMP-dependent synthetase and ligase YP_001529381.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein YP_001529382.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tte:TTE1468 ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetyltransferase domain (only BioB/LipA-like domain in Thermotoga) YP_001529383.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001529384.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: chy:CHY_2227 PHP domain protein YP_001529385.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pca:Pcar_2760 transcriptional regulators, TraR/DksA family YP_001529386.1 KEGG: dde:Dde_3467 hypothetical protein YP_001529387.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_3313 short-chain dehydrogenase/reductase SDR YP_001529388.1 KEGG: bam:Bamb_4569 hypothetical protein YP_001529389.1 KEGG: rso:RSc0786 hypothetical protein YP_001529390.1 KEGG: sfu:Sfum_0654 response regulator receiver protein YP_001529391.1 PFAM: WD40 domain protein beta Propeller; KEGG: sus:Acid_1388 tetratricopeptide TPR_2 repeat protein YP_001529392.1 PFAM: diacylglycerol kinase catalytic region; KEGG: afw:Anae109_3816 diacylglycerol kinase catalytic region YP_001529393.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: tte:TTE2220 thioredoxin reductase YP_001529394.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sfu:Sfum_1708 thioredoxin YP_001529395.1 PFAM: EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_001529396.1 PFAM: MGS domain protein; KEGG: neu:NE0876 probable phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclodydrolase transmembrane protein YP_001529397.1 PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: sfu:Sfum_3083 AICARFT/IMPCHase bienzyme, formylation region YP_001529398.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: sma:SAV7373 putative hydrogenase, Nickel incorporation protein YP_001529399.1 KEGG: pap:PSPA7_2291 lipase modulator protein YP_001529400.1 KEGG: sth:STH1727 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001529401.1 KEGG: ppd:Ppro_1910 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001529402.1 KEGG: mbn:Mboo_0445 hypothetical protein YP_001529403.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: mxa:MXAN_2958 hypothetical protein YP_001529404.1 PFAM: NADPH-dependent FMN reductase; KEGG: swo:Swol_0022 multimeric flavodoxin WrbA-like protein YP_001529405.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_0354 radical SAM domain protein YP_001529406.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0355 methyltransferase type 11 YP_001529407.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: cvi:CV_2194 hypothetical protein YP_001529408.1 PFAM: peptidase M48 Ste24p; KEGG: noc:Noc_1831 peptidase M48, Ste24p YP_001529409.1 PFAM: LemA family protein; KEGG: aeh:Mlg_1468 LemA family protein YP_001529410.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dps:DP1260 similar to rubrerythrin YP_001529412.1 PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 protein of unknown function DUF204 YP_001529413.1 PFAM: protein of unknown function DUF255; KEGG: cte:CT1279 hypothetical protein YP_001529414.1 PFAM: chemotaxis sensory transducer; KEGG: sdn:Sden_3297 chemotaxis sensory transducer YP_001529415.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_1750 alpha/beta hydrolase fold YP_001529416.1 PFAM: Fe-S cluster domain protein; KEGG: sfu:Sfum_4098 hypothetical protein YP_001529417.1 PFAM: Rubrerythrin; KEGG: mem:Memar_0765 rubrerythrin YP_001529418.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sfu:Sfum_0034 formate dehydrogenase family accessory protein FdhD YP_001529419.1 KEGG: dps:DP0753 hypothetical protein YP_001529420.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sfu:Sfum_1116 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001529421.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_2330 hypothetical protein YP_001529422.1 TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 bifunctional methionine sulfoxide reductase A/B protein YP_001529423.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB12434 O-GlcNAc transferase YP_001529424.1 KEGG: sfu:Sfum_1073 ATP-dependent Zn protease YP_001529425.1 PFAM: phosphotransferase KptA/Tpt1; KEGG: sfu:Sfum_0839 phosphotransferase KptA/Tpt1 YP_001529426.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001529427.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: swo:Swol_0601 signal transduction histidine kinase-like protein YP_001529429.1 PFAM: regulatory protein TetR; KEGG: aae:aq_2179 transcriptional regulator (TetR/AcrR family) YP_001529430.1 PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; KR domain protein; KEGG: ddi:DDB_0201628 hypothetical protein YP_001529431.1 PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; Sterol-binding domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KR domain protein; KEGG: pla:Plav_3069 protein of unknown function DUF35 YP_001529432.1 KEGG: pla:Plav_3070 thiolase family protein YP_001529433.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: afu:AF2057 acyl-CoA dehydrogenase (acd-10) YP_001529434.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sat:SYN_02128 acyl-CoA dehydrogenase, long-chain specific YP_001529435.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sfu:Sfum_1527 alpha-methylacyl-CoA racemase YP_001529436.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: gur:Gura_3257 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_001529437.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001529438.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2137 probable succinate dehydrogenase, iron-sulfur protein YP_001529442.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0095 ABC transporter ATP-binding protein YP_001529443.1 PFAM: SufBD protein; KEGG: ctc:CTC00757 hypothetical protein YP_001529444.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001529445.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001529446.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: sfu:Sfum_1772 phosphoribosylanthranilate isomerase YP_001529447.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: gsu:GSU2380 indole-3-glycerol phosphate synthase YP_001529448.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001529449.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sfu:Sfum_1775 glutamine amidotransferase of anthranilate synthase YP_001529450.1 PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: sfu:Sfum_1776 anthranilate synthase YP_001529451.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: saz:Sama_0252 competence/damage-inducible protein CinA YP_001529452.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfu:Sfum_2402 amidohydrolase YP_001529454.1 PFAM: MOFRL domain protein; KEGG: sus:Acid_0778 hydroxypyruvate reductase YP_001529455.1 PFAM: protein of unknown function DUF179; KEGG: mca:MCA2336 hypothetical protein YP_001529456.1 KEGG: sfu:Sfum_1925 hypothetical protein YP_001529457.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gsu:GSU0106 soj protein YP_001529458.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0293 macrophage infectivity potentiator YP_001529459.1 PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: msm:MSMEG_0028 serine-threonine protein kinase YP_001529460.1 TIGRFAM: conserved hypothetical protein; KEGG: sfu:Sfum_0347 hypothetical protein YP_001529461.1 PFAM: protein of unknown function DUF89; KEGG: aae:aq_893 hypothetical protein YP_001529462.1 PFAM: protein of unknown function UPF0066; KEGG: rxy:Rxyl_0597 protein of unknown function UPF0066 YP_001529463.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gur:Gura_2583 tetratricopeptide TPR_2 repeat protein YP_001529464.1 KEGG: cfa:481375 coiled-coil domain containing 88A YP_001529465.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001529466.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sfu:Sfum_0289 RNA methyltransferase, TrmA family YP_001529467.1 PFAM: protein of unknown function DUF296; KEGG: sat:SYN_00317 predicted DNA-binding protein with PD1-like DNA-binding motif YP_001529469.1 PFAM: type IV pilus assembly PilZ YP_001529470.1 PFAM: alpha/beta hydrolase fold; KEGG: ppf:Pput_1350 alpha/beta hydrolase fold YP_001529471.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_3948 nitroreductase YP_001529472.1 KEGG: dde:Dde_0040 lipoprotein, putative YP_001529473.1 KEGG: pth:PTH_1793 phosphopantothenoylcysteine synthetase/decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001529476.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001529477.1 KEGG: gsu:GSU0536 conserved hypothetical protein TIGR00268 YP_001529478.1 KEGG: mva:Mvan_5681 hypothetical protein YP_001529479.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_001529480.1 KEGG: sat:SYN_00615 predicted acetyltransferase/acyltransferase YP_001529481.1 PFAM: regulatory protein MerR; regulatory protein TetR; KEGG: mta:Moth_2368 transcriptional regulator, TetR family YP_001529482.1 KEGG: bbt:BBta_5095 putative thiolase/acetyl-CoA acetyltransferase YP_001529483.1 PFAM: protein of unknown function DUF35; KEGG: eba:ebB200 conserved hypothetical protein, probable small subunit of thiolase encoded by ebA5673 YP_001529484.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_1572 enoyl-CoA hydratase/isomerase YP_001529485.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: chy:CHY_1602 butyryl-CoA dehydrogenase YP_001529486.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_1133 AMP-dependent synthetase and ligase YP_001529487.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_001529488.1 PFAM: amidohydrolase 2; KEGG: rxy:Rxyl_2657 amidohydrolase 2 YP_001529489.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gka:GK2778 3-ketoacyl-[acyl carrier protein] reductase YP_001529490.1 KEGG: ppf:Pput_1659 lipid-binding START domain protein YP_001529491.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: noc:Noc_2047 acetoacetyl-CoA synthase YP_001529492.1 KEGG: maq:Maqu_3858 hypothetical protein YP_001529493.1 PFAM: glycosyl transferase family 2; KEGG: syf:Synpcc7942_1173 hypothetical protein YP_001529496.1 PFAM: response regulator receiver; histidine kinase A domain protein; KEGG: sus:Acid_4616 response regulator receiver modulated diguanylate cyclase YP_001529497.1 KEGG: pca:Pcar_2723 hypothetical protein YP_001529498.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: sfu:Sfum_1044 translation elongation factor G YP_001529499.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pla:Plav_0870 alpha/beta hydrolase fold-3 domain protein YP_001529500.1 KEGG: rba:RB4375 probable extracellular nuclease YP_001529501.1 PFAM: regulatory protein MarR; KEGG: gme:Gmet_2133 transcriptional regulator, MarR family YP_001529502.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY1516 putative anaerobic dehydrogenase YP_001529503.1 PFAM: type IV pilus assembly PilZ; KEGG: mxa:MXAN_2528 hypothetical protein YP_001529505.1 PFAM: DnaJ central domain protein; KEGG: mms:mma_1030 hypothetical protein YP_001529506.1 KEGG: sus:Acid_6999 hypothetical protein YP_001529507.1 KEGG: she:Shewmr4_3212 hypothetical protein YP_001529508.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pvi:Cvib_0552 ABC transporter related YP_001529509.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cte:CT0377 hypothetical protein YP_001529510.1 PFAM: outer membrane efflux protein; KEGG: cte:CT0376 FusA/NodT family protein YP_001529511.1 PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2122 TPR repeat YP_001529512.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gsu:GSU0106 soj protein YP_001529513.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cth:Cthe_2378 ParB-like partition protein YP_001529514.1 PFAM: protein of unknown function DUF901; KEGG: sat:SYN_01764 hypothetical cytosolic protein YP_001529515.1 KEGG: dde:Dde_0300 hypothetical protein YP_001529516.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: dde:Dde_0299 trimethylamine N-oxide reductase, cytochrome c-type subunit YP_001529517.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: pth:PTH_0080 dimethyladenosine transferase YP_001529518.1 KEGG: dde:Dde_1759 hypothetical protein YP_001529519.1 PFAM: Radical SAM domain protein; KEGG: sat:SYN_01173 radical SAM superfamily protein YP_001529520.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1504 TPR repeat YP_001529521.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tdn:Tmden_1739 MscS mechanosensitive ion channel YP_001529522.1 PFAM: cyclase family protein; KEGG: rca:Rcas_2300 cyclase family protein YP_001529523.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2767 putative enoyl-CoA hydratase YP_001529524.1 PFAM: Saccharopine dehydrogenase; KEGG: nfa:nfa9110 hypothetical protein YP_001529525.1 KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001529526.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfu:Sfum_1185 phosphoribosylglycinamide formyltransferase YP_001529527.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pca:Pcar_1175 catalase/peroxidase YP_001529528.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001529530.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_3268 two component, sigma54 specific, transcriptional regulator, fis family YP_001529531.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_3269 putative sensor with HAMP domain YP_001529532.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_2331 ABC transporter-related protein YP_001529533.1 PFAM: transport system permease protein; KEGG: mma:MM_2068 iron(III) dicitrate transport system permease protein YP_001529534.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_1622 iron transport periplasmic binding protein YP_001529535.1 PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_2403 O-antigen polymerase YP_001529536.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease YP_001529537.1 PFAM: PHP domain protein; KEGG: gka:GK3323 capsular polysaccharide biosynthesis protein YP_001529538.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pca:Pcar_1539 uncharacterized exopolysaccharide biosynthesis protein YP_001529539.1 PFAM: polysaccharide export protein; KEGG: pca:Pcar_1538 capsular polysaccharide export protein, putative YP_001529540.1 KEGG: pca:Pcar_1537 hypothetical protein YP_001529541.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; Miro domain protein; KEGG: sfu:Sfum_0068 translation elongation factor G YP_001529542.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: sat:SYN_02455 rRNA methylase YP_001529543.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: gsu:GSU0686 deoxyxylulose-5-phosphate synthase YP_001529544.1 PFAM: Polyprenyl synthetase; KEGG: maq:Maqu_2437 polyprenyl synthetase YP_001529545.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: gme:Gmet_1936 exonuclease VII, small subunit YP_001529546.1 KEGG: gur:Gura_1890 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_001529547.1 KEGG: amt:Amet_4505 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_001529548.1 KEGG: ppd:Ppro_0031 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia YP_001529549.1 KEGG: eba:ebA2553 hypothetical protein YP_001529550.1 PFAM: GAF domain protein; KEGG: sfu:Sfum_1857 putative GAF sensor protein YP_001529551.1 PFAM: BLUF domain protein; KEGG: mmw:Mmwyl1_2753 BLUF domain protein YP_001529552.1 PFAM: protein of unknown function DUF442; KEGG: rba:RB11176 hypothetical protein YP_001529553.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_3816 AMP-dependent synthetase and ligase YP_001529554.1 PFAM: creatinase; peptidase M24; KEGG: det:DET0715 metallopeptidase, M24 family YP_001529555.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sat:SYN_00952 integrase/recombinase YP_001529556.1 TIGRFAM: PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD; KEGG: ppd:Ppro_3100 2-nitropropane dioxygenase, NPD YP_001529557.1 TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: sde:Sde_0688 polyketide synthase modules and related proteins-like YP_001529558.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: gur:Gura_2011 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001529559.1 KEGG: sbm:Shew185_3096 metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_001529560.1 KEGG: sfu:Sfum_0594 putative regulatory protein, FmdB family YP_001529562.1 KEGG: sat:SYN_00048 hypothetical cytosolic protein YP_001529563.1 PFAM: chemotaxis sensory transducer; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: dps:DP0292 chemotaxis transducer YP_001529564.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001529566.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: afu:AF1958 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA) YP_001529567.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: rpc:RPC_2055 2-hydroxyglutaryl-CoA dehydratase, D-component YP_001529568.1 KEGG: sbl:Sbal_0939 hypothetical protein YP_001529569.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: drm:Dred_1649 nitroreductase YP_001529574.1 KEGG: cpr:CPR_1568 hypothetical protein YP_001529575.1 PFAM: phosphofructokinase; KEGG: sfu:Sfum_3375 phosphofructokinase YP_001529576.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3864 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001529577.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ppd:Ppro_3006 histidine kinase YP_001529578.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 transcriptional regulator, AbrB family YP_001529579.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1077 hypothetical protein YP_001529581.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: hha:Hhal_0408 addiction module toxin, Txe/YoeB family YP_001529582.1 PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU2396 hypothetical protein YP_001529584.1 PFAM: YD repeat-containing protein; KEGG: gur:Gura_1158 YD repeat protein YP_001529585.1 TIGRFAM: polymorphic outer membrane protein; PFAM: Polymorphic membrane protein Chlamydia; KEGG: rba:RB4375 probable extracellular nuclease YP_001529586.1 KEGG: gsu:GSU0017 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001529587.1 PFAM: SurA domain; KEGG: dvl:Dvul_1261 hypothetical protein YP_001529588.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase YP_001529589.1 KEGG: cya:CYA_0772 hypothetical protein YP_001529590.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: sat:SYN_01535 DNA repair protein YP_001529591.1 PFAM: GHMP kinase; KEGG: aba:Acid345_2431 GHMP kinase YP_001529592.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001529593.1 KEGG: sfu:Sfum_2445 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_001529595.1 PFAM: purine or other phosphorylase family 1; KEGG: sfu:Sfum_1429 purine and other phosphorylases, family 1 YP_001529596.1 KEGG: dar:Daro_1734 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001529597.1 PFAM: acylphosphatase; KEGG: pth:PTH_1653 acylphosphatases YP_001529598.1 PFAM: histone family protein DNA-binding protein; KEGG: ilo:IL1002 bacterial nucleoid DNA-binding protein HU-beta YP_001529599.1 KEGG: gsu:GSU1132 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001529600.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: mxa:MXAN_4901 chromosome segregation protein SMC YP_001529601.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2341 glycosyl transferase, family 2 YP_001529602.1 PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1626 glycosyl transferase, family 2 YP_001529603.1 PFAM: Radical SAM domain protein YP_001529605.1 PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive YP_001529606.1 PFAM: Class I peptide chain release factor; KEGG: tbd:Tbd_1523 hypothetical protein YP_001529607.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001529608.1 PFAM: Rhomboid family protein; KEGG: sat:SYN_00033 hypothetical membrane protein YP_001529609.1 KEGG: gsu:GSU1936 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001529610.1 TIGRFAM: valyl-tRNA synthetase; KEGG: gsu:GSU2045 valyl-tRNA synthetase YP_001529612.1 KEGG: mgm:Mmc1_1473 conserved hypothetical protein, conserved YP_001529613.1 PFAM: protein of unknown function DUF558; KEGG: cth:Cthe_1319 protein of unknown function DUF558 YP_001529614.1 PFAM: protein of unknown function DUF1566; KEGG: lic:LIC10497 hypothetical protein YP_001529615.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: plt:Plut_1140 cobyric acid synthase CobQ YP_001529616.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pap:PSPA7_6333 TonB protein YP_001529617.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2) YP_001529618.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like YP_001529619.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like YP_001529620.1 KEGG: sfu:Sfum_1962 signal peptide peptidase SppA, 36K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: Enoyl-CoA hydratase/isomerase; peptidase S49 YP_001529621.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rci:RCIX745 4Fe-4S ferredoxin-domain protein YP_001529622.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mxa:MXAN_2997 HAMP domain/GAF domain/GGDEF domain protein YP_001529623.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_001529624.1 PFAM: metallophosphoesterase; KEGG: tko:TK0547 metallophosphoesterase, calcineurin superfamily YP_001529625.1 KEGG: mxa:MXAN_5658 hypothetical protein YP_001529626.1 KEGG: deb:DehaBAV1_0738 thymidylate synthase-like protein YP_001529627.1 PFAM: metallophosphoesterase; KEGG: rso:RS02166 probable acid sphingomyelinase-like phosphodiesterase transmembrane protein YP_001529628.1 PFAM: heat shock protein DnaJ domain protein; KEGG: hch:HCH_00578 DnaJ-domain-containing protein 1 YP_001529629.1 PFAM: beta-lactamase domain protein; KEGG: gtn:GTNG_1254 hypothetical protein YP_001529630.1 KEGG: sat:SYN_00797 tRNA 2-methylthioadenosine synthase -like protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001529631.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: gur:Gura_1492 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_001529632.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dps:DP0962 related to methyl-accepting chemotaxis protein YP_001529633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppd:Ppro_0085 diguanylate cyclase with PAS/PAC sensor YP_001529634.1 PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS YP_001529635.1 PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS YP_001529636.1 PFAM: GCN5-related N-acetyltransferase; KEGG: noc:Noc_2091 hypothetical protein YP_001529637.1 PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS YP_001529638.1 PFAM: FG-GAP repeat protein; KEGG: cch:Cag_0738 VCBS YP_001529639.1 PFAM: ApbE family lipoprotein; KEGG: fjo:Fjoh_4070 ApbE family lipoprotein YP_001529640.1 KEGG: rca:Rcas_1168 prevent-host-death family protein YP_001529641.1 PFAM: PilT protein domain protein; KEGG: rca:Rcas_1169 PilT protein domain protein YP_001529642.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: lip:LI0145 GTP-binding protein LepA YP_001529643.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: ade:Adeh_2615 three-deoxy-D-manno-octulosonic-acid transferase-like YP_001529644.1 KEGG: pca:Pcar_0105 ABC-type transport systems, periplasmic component YP_001529645.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001529646.1 KEGG: sen:SACE_6127 putative thiamine monophosphate kinase; TIGRFAM: thiamine-phosphate pyrophosphorylase; thiamine-monophosphate kinase; PFAM: thiamine monophosphate synthase; AIR synthase related protein domain protein YP_001529647.1 TIGRFAM: metal dependent phophohydrolase; KEGG: pdi:BDI_3714 hypothetical protein YP_001529648.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rxy:Rxyl_1620 peptide chain release factor 2 YP_001529649.1 Transfers the fatty acyl group on membrane lipoproteins YP_001529650.1 KEGG: sfu:Sfum_2781 C_GCAxxG_C_C family protein YP_001529651.1 PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_3655 alpha/beta hydrolase fold YP_001529652.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: mem:Memar_0339 aldehyde ferredoxin oxidoreductase YP_001529653.1 PFAM: regulatory protein TetR; KEGG: xau:Xaut_4073 transcriptional regulator, TetR family YP_001529654.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein YP_001529655.1 PFAM: Patched family protein; KEGG: sde:Sde_1317 exporters of the RND superfamily-like YP_001529656.1 TIGRFAM: putative regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mta:Moth_0829 hypothetical protein YP_001529657.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gur:Gura_1801 integral membrane sensor signal transduction histidine kinase YP_001529658.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gur:Gura_1802 two component, sigma-54 specific, transcriptional regulator, fis family YP_001529659.1 KEGG: dsy:DSY2402 hypothetical protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001529660.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0672 hypothetical protein YP_001529662.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbm:Shew185_3779 glycerophosphoryl diester phosphodiesterase YP_001529663.1 TIGRFAM: prevent-host-death family protein; KEGG: rca:Rcas_1056 hypothetical protein YP_001529664.1 PFAM: PilT protein domain protein; KEGG: mes:Meso_4552 PilT protein-like YP_001529665.1 KEGG: ava:Ava_0347 hypothetical protein YP_001529666.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT1529 nitrogen fixation specific regulatory protein NifA YP_001529667.1 PFAM: regulatory protein MarR; KEGG: bsu:BG11106 similar to transcriptional regulator (MarR family) YP_001529668.1 TIGRFAM: polymorphic outer membrane protein; SMART: Parallel beta-helix repeat; KEGG: rrs:RoseRS_4272 hypothetical protein YP_001529669.1 PFAM: Polymorphic membrane protein Chlamydia; KEGG: rrs:RoseRS_4272 hypothetical protein YP_001529670.1 KEGG: neu:NE1747 putative type 4 fimbrial biogenesis protein PilY1 YP_001529671.1 PFAM: Polymorphic membrane protein Chlamydia; KEGG: rrs:RoseRS_4272 hypothetical protein YP_001529672.1 KEGG: vfi:VFA1019 hypothetical cytosolic protein YP_001529673.1 KEGG: art:Arth_3178 S-layer domain protein YP_001529674.1 PFAM: Fibronectin type III domain protein; KEGG: gur:Gura_2022 fibronectin, type III domain protein YP_001529675.1 PFAM: sulfotransferase; KEGG: syg:sync_0226 hypothetical protein YP_001529677.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: sfu:Sfum_0777 polysaccharide biosynthesis protein YP_001529678.1 KEGG: mxa:MXAN_4905 putative polyglutamate synthase CapA YP_001529679.1 KEGG: syw:SYNW0182 hypothetical protein YP_001529680.1 KEGG: cps:CPS_2924 hypothetical protein YP_001529681.1 KEGG: cps:CPS_5015 putative polysaccharide biosynthesis protein YP_001529682.1 KEGG: ava:Ava_1380 O-antigen polymerase YP_001529683.1 PFAM: glycosyl transferase group 1; KEGG: pin:Ping_0456 glycosyl transferase, group 1 YP_001529684.1 PFAM: glycosyl transferase group 1; KEGG: rba:RB7146 probable hexosyltransferase YP_001529685.1 PFAM: glycosyl transferase group 1; KEGG: mes:Meso_2877 glycosyl transferase, group 1 YP_001529687.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein YP_001529688.1 PFAM: Radical SAM domain protein; KEGG: gur:Gura_2586 radical SAM domain protein YP_001529689.1 PFAM: glycosyl transferase group 1; KEGG: vvu:VV1_2310 putative glycosyltransferase protein YP_001529690.1 KEGG: rle:pRL120370 putative transposase for insertion sequence element YP_001529691.1 PFAM: sugar transferase; KEGG: dps:DPPB91 related to UDP-galactose-lipid carrier transferase YP_001529693.1 PFAM: PilT protein domain protein; KEGG: sus:Acid_0506 PilT protein domain protein YP_001529694.1 KEGG: rbe:RBE_0383 AAA+ superfamily protein YP_001529695.1 KEGG: rrs:RoseRS_2492 protein of unknown function DUF433 YP_001529696.1 KEGG: rca:Rcas_1637 hypothetical protein YP_001529698.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein YP_001529699.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: rba:RB2515 probable UDP-glucose/GDP-mannose dehydrogenase YP_001529700.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: wsu:WS2188 putative oxidoreductase YP_001529701.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: lip:LIC094 WblC protein YP_001529702.1 PFAM: sugar transferase; KEGG: cjj:CJJ81176_1141 general glycosylation pathway protein YP_001529703.1 KEGG: mma:MM_2113 hypothetical protein YP_001529705.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: bld:BLi00799 hypothetical protein YP_001529706.1 PFAM: glycosyl transferase group 1; KEGG: pae:PA3149 probable glycosyltransferase WbpH YP_001529707.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001529708.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001529709.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tth:TTC0285 UDP-N-acetylglucosamine 2-epimerase YP_001529710.1 KEGG: pth:PTH_0385 hypothetical protein YP_001529711.1 KEGG: maq:Maqu_2594 hypothetical protein YP_001529712.1 KEGG: rci:RCIX1953 hypothetical protein YP_001529713.1 KEGG: rci:RCIX1950 hypothetical protein YP_001529714.1 PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0039 glycosyltransferase family 4 YP_001529717.1 PFAM: polysaccharide biosynthesis protein; KEGG: sfu:Sfum_0777 polysaccharide biosynthesis protein YP_001529718.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cvi:CV_4124 probable aminotransferase YP_001529719.1 PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_2403 O-antigen polymerase YP_001529721.1 PFAM: PilT protein domain protein; KEGG: ana:all1495 virulence associated protein C YP_001529722.1 KEGG: cbd:COXBU7E912_A0030 archaeal ATPase YP_001529723.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: gur:Gura_0426 filamentation induced by cAMP protein Fic YP_001529724.1 KEGG: lpf:lpl0180 hypothetical protein YP_001529725.1 TIGRFAM: prevent-host-death family protein; KEGG: aba:Acid345_4434 prevent-host-death protein YP_001529726.1 KEGG: sme:SMc03137 hypothetical protein YP_001529727.1 KEGG: cph:Cpha266_2056 hypothetical protein YP_001529728.1 PFAM: Domain of unknown function DUF1814; KEGG: rpd:RPD_2263 hypothetical protein YP_001529729.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: sbl:Sbal_1482 UDP-glucose 4-epimerase YP_001529730.1 PFAM: phosphoglucose isomerase (PGI); KEGG: olu:OSTLU_17428 predicted protein YP_001529731.1 KEGG: ade:Adeh_0005 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001529732.1 KEGG: sfu:Sfum_4083 solute binding protein-like YP_001529733.1 KEGG: sfu:Sfum_4083 solute binding protein-like YP_001529734.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_4082 tetratricopeptide TPR_2 repeat protein YP_001529735.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001529736.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme YP_001529737.1 KEGG: gur:Gura_0691 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001529738.1 PFAM: peptidase M22 glycoprotease; KEGG: sfu:Sfum_1786 peptidase M22, glycoprotease YP_001529740.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vvy:VV0166 outer membrane cobalamin receptor protein YP_001529741.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dsy:DSY2318 hypothetical protein YP_001529742.1 KEGG: rle:pRL120370 putative transposase for insertion sequence element YP_001529743.1 PFAM: regulatory protein TetR; KEGG: eba:ebA5314 TetR-family transcriptional regulator YP_001529746.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sat:SYN_02383 phosphoenolpyruvate synthase YP_001529747.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_3226 UspA domain protein YP_001529748.1 KEGG: sfu:Sfum_4026 hypothetical protein YP_001529749.1 PFAM: glycosyl transferase family 2; KEGG: hch:HCH_06165 glycosyltransferase, probably involved in cell wall biogenesis YP_001529751.1 PFAM: beta-lactamase domain protein; KEGG: pmy:Pmen_1369 beta-lactamase domain protein YP_001529752.1 KEGG: syw:SYNW0088 hypothetical protein YP_001529753.1 PFAM: protein of unknown function DUF1568; Chromosomal replication initiator DnaA domain; KEGG: pha:PSHAa2471 hypothetical protein YP_001529754.1 PFAM: Radical SAM domain protein; KEGG: sus:Acid_6986 radical SAM domain protein YP_001529755.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0095 iron-sulfur cluster-binding protein YP_001529756.1 PFAM: Polymorphic membrane protein Chlamydia; KEGG: rrs:RoseRS_4272 hypothetical protein YP_001529757.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter YP_001529758.1 KEGG: stp:Strop_0446 heavy metal transport/detoxification protein YP_001529759.1 PFAM: cyclic nucleotide-binding; KEGG: mxa:MXAN_2521 cyclic nucleotide-binding domain protein YP_001529760.1 KEGG: dps:DP2636 hypothetical protein YP_001529761.1 KEGG: pdi:BDI_1200 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_001529762.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pca:Pcar_0644 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative YP_001529763.1 KEGG: sfu:Sfum_2341 type IV pilus assembly PilZ YP_001529764.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pth:PTH_0219 hypothetical protein YP_001529765.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rca:Rcas_0781 glutamine--scyllo-inositol transaminase YP_001529766.1 KEGG: gme:Gmet_1215 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001529767.1 KEGG: sfu:Sfum_2122 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001529769.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sfu:Sfum_2120 SUA5/YciO/YrdC/YwlC family protein YP_001529770.1 PFAM: carboxyl transferase; KEGG: pla:Plav_2692 carbamoyl-phosphate synthase L chain ATP-binding YP_001529771.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1766 radical SAM domain protein YP_001529772.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain protein YP_001529773.1 PFAM: protein of unknown function UPF0153; KEGG: rci:RCIX403 hypothetical protein YP_001529774.1 KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001529775.1 KEGG: ppd:Ppro_2008 hypothetical protein YP_001529776.1 PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mgm:Mmc1_1605 short-chain dehydrogenase/reductase SDR YP_001529777.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_2462 hypothetical protein YP_001529778.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sfu:Sfum_2464 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001529779.1 KEGG: cch:Cag_1277 hypothetical protein YP_001529780.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: hch:HCH_02779 rhs family protein YP_001529781.1 PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: mta:Moth_1302 N-acyl-D-amino-acid deacylase YP_001529782.1 TIGRFAM: prevent-host-death family protein; KEGG: pna:Pnap_0061 prevent-host-death family protein YP_001529783.1 KEGG: sfu:Sfum_0407 hypothetical protein YP_001529784.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2114 methyltransferase type 11 YP_001529785.1 KEGG: hch:HCH_00566 hypothetical protein YP_001529786.1 PFAM: NUDIX hydrolase; KEGG: tme:Tmel_0555 NUDIX hydrolase YP_001529787.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_0112 putative amidase YP_001529788.1 KEGG: gme:Gmet_3333 phosphoribosyltransferase YP_001529789.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sfu:Sfum_3896 isocitrate dehydrogenase, NADP-dependent YP_001529790.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: gur:Gura_2796 RNA methyltransferase, TrmH family, group 3 YP_001529791.1 Essential for recycling GMP and indirectly, cGMP YP_001529792.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein YP_001529793.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: mta:Moth_0890 hypothetical protein YP_001529794.1 KEGG: sat:SYN_01277 hypothetical GTP-binding protein YP_001529795.1 PFAM: protein of unknown function DUF343; KEGG: sfu:Sfum_3635 protein of unknown function DUF343 YP_001529796.1 PFAM: Fe-S cluster domain protein; KEGG: deb:DehaBAV1_0633 hypothetical protein YP_001529797.1 KEGG: mxa:MXAN_3565 hypothetical protein YP_001529798.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_5896 oxidoreductase, short chain dehydrogenase/reductase family YP_001529799.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B3037 short-chain dehydrogenase/reductase SDR YP_001529800.1 PFAM: amidohydrolase 2; KEGG: mka:MK0426 hypothetical protein YP_001529801.1 PFAM: regulatory protein TetR; KEGG: bja:blr7866 transcriptional regulatory protein YP_001529802.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bte:BTH_I2362 acyl-CoA dehydrogenase domain protein YP_001529803.1 PFAM: Phosphoglycerate mutase; KEGG: pau:PA14_40850 putative phosphoglycerate mutase YP_001529804.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: gme:Gmet_3300 electron transfer flavoprotein beta-subunit YP_001529805.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: afu:AF0287 electron transfer flavoprotein, subunit alpha YP_001529806.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_2886 phosphate binding protein YP_001529807.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2887 phosphate ABC transporter, inner membrane subunit PstC YP_001529808.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2888 phosphate ABC transporter, inner membrane subunit PstA YP_001529809.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001529810.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dps:DP1884 related to phosphate transport system regulatory protein PhoU YP_001529811.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pca:Pcar_0653 response regulator receiver domain protein (CheY-like) YP_001529812.1 KEGG: pca:Pcar_0654 related to two-component system sensor histidine kinase (PHO family); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001529813.1 KEGG: gka:GK1825 acylglycerol lipase YP_001529814.1 KEGG: sat:SYN_01573 hypothetical cytosolic protein YP_001529815.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001529816.1 PFAM: NUDIX hydrolase; KEGG: ava:Ava_1823 NUDIX hydrolase YP_001529817.1 KEGG: sfu:Sfum_1261 DNA repair photolyase-like YP_001529818.1 PFAM: beta-lactamase domain protein; KEGG: mac:MA4405 metallo-beta-lactamase superfamily protein YP_001529819.1 PFAM: response regulator receiver; KEGG: mxa:MXAN_2050 response regulator YP_001529820.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_1079 transcriptional regulator, TetR family YP_001529821.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rrs:RoseRS_1736 PBS lyase heat domain protein repeat-containing protein YP_001529822.1 KEGG: cch:Cag_0738 VCBS YP_001529823.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0820 putative transcription regulator protein YP_001529825.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: maq:Maqu_0645 membrane protein involved in aromatic hydrocarbon degradation YP_001529826.1 KEGG: sat:SYN_00707 hypothetical protein YP_001529827.1 PFAM: Prephenate dehydrogenase; KEGG: mhu:Mhun_1033 prephenate dehydrogenase YP_001529828.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001529829.1 KEGG: syd:Syncc9605_2345 shikimate kinase YP_001529830.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001529831.1 PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pca:Pcar_1887 chorismate mutase/prephenate dehydratase YP_001529832.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate YP_001529833.1 KEGG: mac:MA0439 fructose-bisphosphate aldolase; TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001529834.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like YP_001529837.1 KEGG: dps:DP2935 hypothetical protein YP_001529838.1 PFAM: protein of unknown function DUF134; KEGG: tte:TTE1845 predicted DNA-binding proteins YP_001529839.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_1417 enoyl-CoA hydratase/isomerase YP_001529840.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_1250 nucleotidyl transferase YP_001529841.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sun:SUN_2138 CDP-glucose 4,6-dehydratase YP_001529842.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: syn:slr0985 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001529843.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: syn:slr1610 hypothetical protein YP_001529844.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pca:Pcar_1128 nucleoside-diphosphate-sugar epimerase/reductase YP_001529845.1 PFAM: Methyltransferase type 11; KEGG: sat:SYN_02653 methyltransferase YP_001529846.1 PFAM: Cephalosporin hydroxylase; KEGG: sat:SYN_02654 putative cephalosporin hydroxylase YP_001529847.1 PFAM: polysaccharide biosynthesis protein; KEGG: plt:Plut_0767 O-antigen transporter-like YP_001529848.1 PFAM: glycosyl transferase family 2; KEGG: syn:slr1063 hypothetical protein YP_001529849.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gur:Gura_3801 NAD-dependent epimerase/dehydratase YP_001529850.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_7123 glycosyl transferase, group 1 YP_001529851.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3795 glycosyl transferase, family 2 YP_001529852.1 PFAM: glycosyl transferase family 2; KEGG: rxy:Rxyl_1238 glycosyl transferase, family 2 YP_001529854.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK2806 acetyl-coenzyme A synthetase YP_001529855.1 PFAM: histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase family protein YP_001529856.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: lic:LIC13404 acetyl-CoA synthase YP_001529857.1 PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: sfu:Sfum_0746 acetyl-CoA hydrolase/transferase YP_001529858.1 PFAM: response regulator receiver; KEGG: ade:Adeh_3688 response regulator receiver domain protein (CheY-like) YP_001529860.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_001529861.1 KEGG: gur:Gura_2285 signal peptide peptidase SppA, 36K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_001529862.1 TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: sfu:Sfum_2118 ribosomal protein S1 YP_001529863.1 KEGG: gme:Gmet_0865 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001529864.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001529865.1 PFAM: conserved hypothetical protein; KEGG: dps:DP2946 hypothetical protein YP_001529866.1 PFAM: ribonuclease H; KEGG: cch:Cag_1744 ribonuclease H YP_001529867.1 KEGG: sat:SYN_00050 hypothetical membrane protein YP_001529868.1 KEGG: noc:Noc_1323 hypothetical protein YP_001529869.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; NADPH-dependent FMN reductase; KEGG: sfu:Sfum_2849 NADPH-dependent FMN reductase YP_001529870.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_3858 predicted methyltransferase YP_001529871.1 KEGG: deh:cbdb_A649 hypothetical protein YP_001529872.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sfu:Sfum_3097 phospholipid/glycerol acyltransferase YP_001529873.1 PFAM: aminoglycoside phosphotransferase; Nucleotidyl transferase; KEGG: sfu:Sfum_0531 nucleotidyl transferase YP_001529874.1 PFAM: TM2 domain containing protein?; KEGG: pau:PA14_05210 hypothetical protein YP_001529875.1 KEGG: sfu:Sfum_0670 hypothetical protein YP_001529876.1 PFAM: OmpA/MotB domain protein; KEGG: gsu:GSU0360 OmpA domain protein YP_001529877.1 KEGG: gsu:GSU2532 hypothetical protein YP_001529878.1 KEGG: gsu:GSU2533 hypothetical protein YP_001529879.1 KEGG: gsu:GSU2532 hypothetical protein YP_001529880.1 KEGG: gsu:GSU2533 hypothetical protein YP_001529881.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: gme:Gmet_2424 methyl-accepting chemotaxis sensory transducer YP_001529882.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit YP_001529883.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: swo:Swol_0330 tripartite ATP-independent periplasmic transporters, DctQ component, putative YP_001529884.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein, family 7 YP_001529885.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: dar:Daro_1156 PAS:GGDEF YP_001529886.1 PFAM: S-layer domain protein; peptidase C14 caspase catalytic subunit p20; KEGG: hch:HCH_04244 FOG: TPR repeat, SEL1 subfamily YP_001529887.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0190 protein of unknown function UPF0118 YP_001529888.1 PFAM: protein of unknown function DUF368; KEGG: pmy:Pmen_3022 protein of unknown function DUF368 YP_001529889.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001529890.1 PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_2154 hydrolase, alpha/beta hydrolase fold family YP_001529891.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_001529892.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gur:Gura_2007 3-beta hydroxysteroid dehydrogenase/isomerase YP_001529893.1 PFAM: Peptidoglycan-binding LysM; KEGG: aau:AAur_3228 putative LysM domain protein YP_001529894.1 PFAM: peptidase M29 aminopeptidase II; KEGG: sat:SYN_02963 aminopeptidase YP_001529895.1 PFAM: peptidase C25 gingipain; KEGG: ppr:PBPRB1950 hypothetical protein YP_001529896.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: nfa:nfa46270 putative mannose-6-phosphate isomerase YP_001529897.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ana:alr1903 unknown protein YP_001529898.1 PFAM: protein of unknown function DUF323; KEGG: ana:all3226 hypothetical protein YP_001529899.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcy:Bcer98_1777 putative cold-shock DNA-binding domain protein YP_001529900.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0756 ABC transporter, ATP-binding protein YP_001529901.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter, inner membrane subunit CbiQ YP_001529902.1 KEGG: dde:Dde_1191 hypothetical protein YP_001529903.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalamin biosynthesis protein CbiM YP_001529904.1 KEGG: dps:DP0758 hypothetical protein YP_001529905.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sat:SYN_02959 phosphoglucosamine mutase YP_001529906.1 KEGG: sat:SYN_02960 UDP-N-acetylglucosamine pyrophosphorylase YP_001529907.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: sfu:Sfum_2177 metal dependent phosphohydrolase YP_001529909.1 KEGG: hch:HCH_00128 hypothetical protein YP_001529910.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001529911.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sfu:Sfum_2788 CMP/dCMP deaminase, zinc-binding YP_001529912.1 KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase-like; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001529913.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pdi:BDI_0792 sulfite synthesis pathway protein CysQ YP_001529914.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001529915.1 KEGG: dps:DP1325 probable N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001529916.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: gur:Gura_3994 putative RNA methylase YP_001529917.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001529918.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dvl:Dvul_1692 acetolactate synthase, large subunit, biosynthetic type YP_001529919.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dps:DP2770 probable acetolactate synthase, small subunit YP_001529920.1 KEGG: sat:SYN_01709 ketol-acid reductoisomerase / 2-dehydropantoate 2-reductase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein YP_001529921.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sat:SYN_02194 2-isopropylmalate synthase YP_001529922.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sat:SYN_00090 2-isopropylmalate synthase YP_001529924.1 SMART: Parallel beta-helix repeat; KEGG: sfu:Sfum_2158 NHL repeat containing protein YP_001529926.1 TIGRFAM: YD repeat protein; KEGG: gur:Gura_1472 YD repeat protein YP_001529927.1 TIGRFAM: YD repeat protein; KEGG: gur:Gura_1472 YD repeat protein YP_001529929.1 TIGRFAM: YD repeat protein; KEGG: gur:Gura_1472 YD repeat protein YP_001529931.1 TIGRFAM: YD repeat protein; KEGG: gur:Gura_1472 YD repeat protein YP_001529932.1 PFAM: protein of unknown function DUF481; KEGG: maq:Maqu_3011 protein of unknown function DUF481 YP_001529933.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0881 hypothetical protein YP_001529934.1 KEGG: shn:Shewana3_2831 hypothetical protein YP_001529935.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mem:Memar_1977 protein of unknown function DUF21 YP_001529936.1 KEGG: sat:SYN_00044 lipoprotein, ComL family YP_001529937.1 required for 70S ribosome assembly YP_001529938.1 KEGG: mxa:MXAN_3204 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001529939.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001529940.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001529941.1 PFAM: periplasmic binding protein; KEGG: sfu:Sfum_2741 periplasmic binding protein YP_001529942.1 PFAM: transport system permease protein; KEGG: sfu:Sfum_2740 transport system permease protein YP_001529943.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2739 ABC transporter related YP_001529944.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0095 iron-sulfur cluster-binding protein YP_001529945.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_1380 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001529946.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: gme:Gmet_0467 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001529948.1 KEGG: sus:Acid_4518 hypothetical protein YP_001529949.1 KEGG: hch:HCH_04665 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_001529950.1 PFAM: ABC-2 type transporter; KEGG: mca:MCA1562 ABC transporter, permease protein YP_001529951.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_05085 ABC-type multidrug transport system, ATPase component YP_001529952.1 KEGG: sat:SYN_00407 hypothetical membrane protein YP_001529953.1 PFAM: beta-lactamase domain protein; KEGG: gur:Gura_2928 beta-lactamase domain protein YP_001529954.1 KEGG: sfu:Sfum_2405 conserved hypothetical cytosolic protein YP_001529955.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001529956.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sfu:Sfum_1382 NusB antitermination factor YP_001529957.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001529958.1 KEGG: sat:SYN_02371 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001529959.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: pth:PTH_1760 riboflavin synthase alpha chain YP_001529960.1 KEGG: pth:PTH_1761 pyrimidine reductase and pyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_001529961.1 PFAM: ATP-cone domain protein; KEGG: dps:DP2786 ATP-cone domain protein YP_001529962.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sat:SYN_02368 deoxycytidylate deaminase YP_001529963.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001529964.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: apl:APL_1819 acyl carrier protein YP_001529965.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: syx:SynWH7803_1861 3-oxoacyl-[acyl-carrier-protein] reductase YP_001529966.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sat:SYN_02363 LSU ribosomal protein L32P YP_001529967.1 KEGG: sfu:Sfum_3216 hypothetical protein YP_001529968.1 KEGG: mma:MM_0633 hypothetical protein YP_001529969.1 KEGG: shm:Shewmr7_1792 hypothetical protein YP_001529970.1 KEGG: rpe:RPE_2493 hypothetical protein YP_001529971.1 KEGG: rpe:RPE_2494 hypothetical protein YP_001529972.1 KEGG: mgm:Mmc1_1284 hypothetical protein YP_001529973.1 PFAM: DNA repair protein RadC; KEGG: cth:Cthe_3048 DNA repair protein RadC YP_001529974.1 PFAM: restriction modification system DNA specificity domain; KEGG: ecv:APECO1_2078 HsdS, type I site-specific deoxyribonuclease YP_001529975.1 PFAM: protein of unknown function DUF1016; KEGG: mbu:Mbur_1219 protein of unknown function DUF1016 YP_001529976.1 PFAM: N-6 DNA methylase; KEGG: mbn:Mboo_1031 N-6 DNA methylase YP_001529977.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mma:MM_2705 type I restriction-modification system restriction subunit YP_001529978.1 PFAM: UbiA prenyltransferase; KEGG: chu:CHU_3793 hypothetical protein YP_001529979.1 PFAM: sugar fermentation stimulation protein; KEGG: gsu:GSU2716 sugar fermentation stimulation protein YP_001529980.1 KEGG: dvl:Dvul_2198 hypothetical protein YP_001529982.1 SMART: Aldehyde ferredoxin oxidoreductase; KEGG: gur:Gura_2648 aldehyde ferredoxin oxidoreductase-like protein YP_001529983.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family YP_001529984.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: chy:CHY_2492 HD domain protein YP_001529985.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3448 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001529986.1 KEGG: sfu:Sfum_0342 sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: low molecular weight phosphotyrosine protein phosphatase; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase YP_001529987.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: gsu:GSU2614 single-stranded-DNA-specific exonuclease RecJ YP_001529988.1 KEGG: sfu:Sfum_2472 hypothetical protein YP_001529989.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001529990.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cta:CTA_0313 PTS system, nitrogen regulatory IIA component YP_001529991.1 KEGG: sfu:Sfum_0006 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001529992.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_001529993.1 PFAM: protein of unknown function UPF0047; KEGG: sat:SYN_00473 hypothetical cytosolic protein YP_001529994.1 KEGG: sfu:Sfum_0268 amidophosphoribosyltransferase YP_001529995.1 KEGG: aba:Acid345_3903 hypothetical protein YP_001529996.1 PFAM: UvrD/REP helicase; KEGG: sfu:Sfum_0502 UvrD/REP helicase YP_001529998.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: pca:Pcar_0272 putative H+/nucleoside symporter YP_001529999.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa32990 acyl-CoA synthase YP_001530000.1 PFAM: plasmid stabilization system; KEGG: gur:Gura_1424 plasmid stabilization system YP_001530001.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gur:Gura_1423 prevent-host-death family protein YP_001530002.1 PFAM: Radical SAM domain protein; KEGG: deh:cbdb_A1319 radical SAM domain protein YP_001530003.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001530004.1 PFAM: CBS domain containing protein; KEGG: sfu:Sfum_2661 CBS domain containing membrane protein YP_001530005.1 KEGG: gvi:gll3470 hypothetical protein YP_001530006.1 KEGG: dvl:Dvul_0731 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001530007.1 PFAM: response regulator receiver; KEGG: mxa:MXAN_0935 response regulator YP_001530008.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dps:DP1041 similar to two-component system sensor histidine kinase (Ntr family) YP_001530009.1 PFAM: protein of unknown function DUF362; KEGG: chy:CHY_1734 hypothetical protein YP_001530010.1 KEGG: dde:Dde_2592 hypothetical protein YP_001530011.1 KEGG: sat:SYN_02864 hypothetical cytosolic protein YP_001530012.1 KEGG: sfu:Sfum_1697 hypothetical protein YP_001530013.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1441 hypothetical protein YP_001530014.1 PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sat:SYN_01990 ATPase, AAA family YP_001530015.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001530016.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dps:DP2960 probable diaminopimelate decarboxylase YP_001530017.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2908 hypothetical protein YP_001530018.1 PFAM: protein of unknown function DUF849; KEGG: pca:Pcar_2907 hypothetical protein YP_001530020.1 KEGG: mxa:MXAN_5598 OmpA domain protein YP_001530021.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0831 radical SAM YP_001530022.1 KEGG: mfa:Mfla_0409 cation efflux protein YP_001530023.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3615 phosphoesterases, Icc protein-like YP_001530024.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rfr:Rfer_0313 NADH:flavin oxidoreductase/NADH oxidase YP_001530025.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sfu:Sfum_0223 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_001530026.1 KEGG: pth:PTH_0992 predicted Rossmann fold nucleotide-binding protein YP_001530028.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ppd:Ppro_2969 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001530030.1 PFAM: protein of unknown function DUF164; KEGG: sat:SYN_02967 Zn binding protein YP_001530031.1 PFAM: protein of unknown function DUF34; KEGG: mta:Moth_0626 protein of unknown function DUF34 YP_001530032.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: sfu:Sfum_1212 RNA polymerase, sigma 70 subunit, RpoD family YP_001530033.1 KEGG: bxe:Bxe_A0525 putative histone H1-like protein YP_001530034.1 KEGG: gur:Gura_4048 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001530035.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001530036.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: ppd:Ppro_3040 imidazoleglycerol-phosphate dehydratase YP_001530038.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein YP_001530039.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_3313 transcriptional regulator, LysR family YP_001530040.1 PFAM: SirA family protein; KEGG: sfu:Sfum_3402 SirA family protein YP_001530041.1 KEGG: bcz:BCZK3780 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001530042.1 KEGG: amt:Amet_1462 peroxiredoxin-like protein YP_001530043.1 KEGG: amt:Amet_1461 alkyl hydroperoxide reductase YP_001530044.1 KEGG: har:HEAR0084 putative membrane protein with signal peptide YP_001530045.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1402 acyl-CoA dehydrogenase domain protein YP_001530046.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_1507 putative diguanylate cyclase (GGDEF domain) YP_001530047.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: gur:Gura_2806 DNA-(apurinic or apyrimidinic site) lyase YP_001530048.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: mxa:MXAN_2689 lipopolysaccharide biosynthesis protein YP_001530049.1 PFAM: nitroreductase; KEGG: bbt:BBta_0024 hypothetical protein YP_001530050.1 PFAM: protein of unknown function DUF152; KEGG: sfu:Sfum_2852 protein of unknown function DUF152 YP_001530051.1 PFAM: protein of unknown function DUF849; KEGG: tte:TTE0719 hypothetical protein YP_001530052.1 KEGG: ava:Ava_4226 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001530054.1 PFAM: regulatory protein LuxR; KEGG: sat:SYN_01028 bacterial regulatory protein, LuxR family YP_001530055.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: det:DET0624 response regulator YP_001530056.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_0960 putative transcriptional regulator, TetR family YP_001530057.1 PFAM: protein of unknown function DUF1446; KEGG: fal:FRAAL1670 conserved hypothetical protein; putative ribokinase-like domain YP_001530058.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mxa:MXAN_2712 enoyl-CoA hydratase/isomerase family protein YP_001530059.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: psa:PST_0187 oxaloacetate decarboxylase, alpha subunit YP_001530060.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: aba:Acid345_0153 acetyl-CoA carboxylase, biotin carboxylase YP_001530061.1 PFAM: carboxyl transferase; KEGG: tfu:Tfu_0948 propionyl-CoA carboxylase YP_001530062.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eba:ebA2055 putative acyl-CoA dehydrogenase YP_001530063.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: gtn:GTNG_3338 acyl-CoA dehydrogenase (short-chain specific) YP_001530064.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_2468 rubrerythrin YP_001530065.1 KEGG: bsu:BG13824 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001530066.1 PFAM: Lytic transglycosylase catalytic; KEGG: hha:Hhal_0297 lytic transglycosylase, catalytic YP_001530067.1 PFAM: creatinase; peptidase M24; KEGG: gur:Gura_1575 creatinase YP_001530068.1 KEGG: chy:CHY_1355 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_001530069.1 KEGG: gtn:GTNG_3336 putative methylmalonyl-CoA mutase protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001530070.1 PFAM: regulatory protein TetR; KEGG: bcy:Bcer98_3861 transcriptional regulator, TetR family YP_001530071.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_00582 transcriptional regulator YP_001530072.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cno:NT01CX_0385 pyruvate formate-lyase YP_001530073.1 KEGG: ecc:c4538 putative pyruvate formate-lyase 3 activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein YP_001530074.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sco:SCO5893 oxidoreductase YP_001530075.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_3313 short-chain dehydrogenase/reductase SDR YP_001530076.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: hch:HCH_01536 D-erythrose-4-phosphate dehydrogenase YP_001530078.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: gox:GOX0606 methionine aminopeptidase YP_001530079.1 PFAM: GTP cyclohydrolase I; KEGG: aba:Acid345_1832 GTP cyclohydrolase I YP_001530080.1 PFAM: cyclic nucleotide-binding; KEGG: dps:DP0804 hypothetical protein YP_001530081.1 KEGG: sfu:Sfum_1191 hypothetical protein YP_001530082.1 PFAM: protein of unknown function DUF583; KEGG: pla:Plav_0746 protein of unknown function DUF583 YP_001530083.1 KEGG: dde:Dde_0063 lipoprotein, putative YP_001530085.1 KEGG: sat:SYN_02167 tetratricopeptide repeat family protein YP_001530086.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001530087.1 PFAM: DNA recombination protein RuvA domain I; KEGG: pca:Pcar_2337 Holliday junction DNA helicase RuvA YP_001530088.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: chy:CHY_1524 crossover junction endodeoxyribonuclease RuvC YP_001530089.1 KEGG: gsu:GSU0023 TPR domain protein; TIGRFAM: Tol-Pal system YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001530090.1 TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_00189 peptidoglycan-associated lipopeptide YP_001530091.1 TIGRFAM: Tol-Pal system beta propeller repeat TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: cch:Cag_1910 TolB protein, putative YP_001530092.1 TIGRFAM: TonB family protein; KEGG: pvi:Cvib_1165 TonB-like protein YP_001530093.1 TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sfu:Sfum_0753 biopolymer transport protein ExbD/TolR YP_001530094.1 TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_2978 TolQ protein YP_001530095.1 molecular chaperone YP_001530096.1 PFAM: protein of unknown function DUF111; KEGG: gur:Gura_0215 protein of unknown function DUF111 YP_001530097.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: pca:Pcar_2471 putative peptidase T YP_001530098.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001530099.1 KEGG: sfu:Sfum_3028 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_001530100.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001530101.1 KEGG: sat:SYN_00911 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001530102.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bch:Bcen2424_1293 transcription elongation factor GreA YP_001530103.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: rru:Rru_A1857 RNA polymerase, omega subunit YP_001530104.1 PFAM: PP-loop domain protein; KEGG: sfu:Sfum_1613 PP-loop domain protein YP_001530105.1 PFAM: protein of unknown function DUF198; KEGG: sfu:Sfum_4100 protein of unknown function DUF198 YP_001530106.1 PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: tcx:Tcr_0793 peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_001530107.1 catalyzes the removal of amino acids from the N termini of peptides YP_001530108.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001530109.1 KEGG: reh:H16_A3170 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II YP_001530110.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: gme:Gmet_0067 ribulose-phosphate 3-epimerase YP_001530111.1 PFAM: PASTA domain containing protein; KEGG: chy:CHY_1478 putative serine/threonine protein kinase YP_001530112.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sfu:Sfum_0150 sun protein YP_001530113.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: drm:Dred_1705 methionyl-tRNA formyltransferase YP_001530114.1 KEGG: sfu:Sfum_0147 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001530115.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: sfu:Sfum_3182 riboflavin biosynthesis protein RibF YP_001530116.1 PFAM: response regulator receiver; KEGG: rrs:RoseRS_2290 two component transcriptional regulator, winged helix family YP_001530117.1 PFAM: N-6 DNA methylase; KEGG: mba:Mbar_A2666 type I restriction-modification system specificity subunit YP_001530118.1 PFAM: restriction modification system DNA specificity domain; KEGG: mba:Mbar_A2665 type I restriction-modification system specificity subunit YP_001530119.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: mac:MA2417 hypothetical protein YP_001530120.1 KEGG: dar:Daro_1308 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001530121.1 KEGG: fjo:Fjoh_0733 hypothetical protein YP_001530122.1 TIGRFAM: Addiction module killer protein HI1419; PFAM: protein of unknown function DUF891; KEGG: ana:all2402 hypothetical protein YP_001530123.1 TIGRFAM: Addiction module antidote protein HI1420; KEGG: ppd:Ppro_3123 putative transcriptional regulator YP_001530124.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sfu:Sfum_2808 aminotransferase, class V YP_001530125.1 KEGG: sfu:Sfum_3241 hypothetical protein YP_001530126.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pca:Pcar_2802 phosphatidylserine synthase-like YP_001530127.1 KEGG: bja:bll7580 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001530128.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF1263 iron-sulfur cluster binding protein YP_001530129.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpa:MAP3925 EchA8_2 YP_001530130.1 KEGG: sfu:Sfum_1308 hypothetical protein YP_001530131.1 PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III YP_001530132.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein YP_001530133.1 PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_2407 polysulphide reductase, NrfD YP_001530135.1 KEGG: dvl:Dvul_2409 hmc operon protein 5 YP_001530136.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6 YP_001530137.1 PFAM: UspA domain protein; KEGG: dvl:Dvul_2717 UspA domain protein YP_001530138.1 PFAM: response regulator receiver; KEGG: dvl:Dvul_2719 response regulator receiver protein YP_001530139.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase YP_001530140.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvl:Dvul_2412 transcriptional regulator, BadM/Rrf2 family YP_001530141.1 PFAM: beta-lactamase domain protein; KEGG: sat:SYN_01158 hydroxyacylglutathione hydrolase YP_001530142.1 PFAM: Rhodanese domain protein; Rubrerythrin; KEGG: dde:Dde_2561 rhodanese-like YP_001530143.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dps:DP1302 similar to NADH dehydrogenase YP_001530145.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: sus:Acid_4463 putative GAF sensor protein YP_001530146.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sfu:Sfum_4068 transcriptional regulator, XRE family YP_001530147.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: mta:Moth_1179 ferredoxin-dependent glutamate synthase YP_001530150.1 PFAM: sodium:neurotransmitter symporter; KEGG: mem:Memar_1316 sodium:neurotransmitter symporter YP_001530151.1 KEGG: cte:CT0583 hypothetical protein YP_001530152.1 KEGG: tdn:Tmden_1934 hypothetical protein YP_001530153.1 PFAM: glutamine synthetase catalytic region; KEGG: dvl:Dvul_1805 glutamine synthetase, catalytic region YP_001530154.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase YP_001530155.1 KEGG: sfu:Sfum_1725 glutamate synthase (NADPH) YP_001530156.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase YP_001530157.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001530159.1 KEGG: maq:Maqu_2375 transport protein, putative YP_001530160.1 PFAM: toluene tolerance family protein; KEGG: cco:CCC13826_2201 toluene tolerance protein Ttg2D YP_001530161.1 PFAM: VacJ family lipoprotein; KEGG: ccv:CCV52592_0586 S-adenosyl-L-methionine-dependent methyltransferase MraW YP_001530163.1 KEGG: pvi:Cvib_1251 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_001530164.1 KEGG: gur:Gura_2821 hypothetical protein YP_001530165.1 KEGG: gur:Gura_3299 fructose/tagatose bisphosphate aldolase-like protein YP_001530166.1 PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_1144 NUDIX hydrolase YP_001530167.1 PFAM: YadA domain protein; KEGG: olu:OSTLU_28282 predicted protein YP_001530169.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: maq:Maqu_1048 iron-containing alcohol dehydrogenase YP_001530170.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: tpe:Tpen_0176 aldehyde ferredoxin oxidoreductase YP_001530171.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sth:STH2049 iron-containing alcohol dehydrogenase YP_001530172.1 KEGG: hch:HCH_05055 hypothetical protein YP_001530173.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ana:alr0252 Na+/H+ antiporter YP_001530174.1 PFAM: alpha-acetolactate decarboxylase; KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase YP_001530175.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afw:Anae109_0766 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001530176.1 KEGG: aeh:Mlg_0510 hypothetical protein YP_001530177.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: pca:Pcar_2469 hypothetical protein YP_001530178.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0879 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001530179.1 PFAM: protein of unknown function UPF0102; KEGG: dps:DP2807 predicted endonuclease YP_001530180.1 KEGG: lpf:lpl1943 hypothetical protein YP_001530181.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rsh:Rsph17029_3579 protein of unknown function DUF112, transmembrane YP_001530182.1 PFAM: conserved hypothetical protein; KEGG: art:Arth_4353 uncharacterized protein UPF0065 YP_001530184.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001530185.1 PFAM: ribosomal protein L19; KEGG: sfu:Sfum_3044 ribosomal protein L19 YP_001530186.1 KEGG: chy:CHY_1429 hypothetical protein YP_001530187.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001530188.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: gur:Gura_3761 16S rRNA processing protein RimM YP_001530189.1 KEGG: dde:Dde_1098 hypothetical protein YP_001530190.1 PFAM: ribosomal protein S16; KEGG: cth:Cthe_0769 ribosomal protein S16 YP_001530191.1 KEGG: pca:Pcar_2225 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001530192.1 KEGG: gme:Gmet_2685 hypothetical protein; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001530193.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase YP_001530194.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_2223 transcriptional regulator, NifA subfamily, fis family YP_001530195.1 PFAM: response regulator receiver; KEGG: cvi:CV_1852 probable sensory box histidine kinase/response regulator YP_001530196.1 KEGG: mgm:Mmc1_3530 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001530197.1 PFAM: CsbD family protein; KEGG: gur:Gura_2405 CsbD family protein YP_001530198.1 KEGG: cph:Cpha266_1360 hypothetical protein YP_001530199.1 KEGG: aav:Aave_0080 hypothetical protein YP_001530200.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppd:Ppro_1880 antibiotic biosynthesis monooxygenase YP_001530202.1 PFAM: Forkhead-associated protein; KEGG: sfu:Sfum_3436 FHA domain containing protein YP_001530203.1 PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_1682 amino acid-binding ACT domain protein YP_001530204.1 KEGG: sfu:Sfum_1683 phenylacetate--CoA ligase YP_001530205.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pca:Pcar_1467 capsular polysaccharide biosynthesis protein I YP_001530207.1 PFAM: Septum formation initiator; KEGG: sat:SYN_03778 septum formation initiator YP_001530208.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: sat:SYN_00104 virulence factor protein YP_001530209.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: amt:Amet_4655 phospholipase D/transphosphatidylase YP_001530210.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pdi:BDI_1909 hypothetical protein YP_001530211.1 PFAM: methylenetetrahydrofolate reductase; KEGG: afw:Anae109_2667 5,10-methylenetetrahydrofolate reductase YP_001530212.1 PFAM: response regulator receiver; KEGG: dde:Dde_0327 response regulator receiver domain protein (CheY-like) YP_001530213.1 PFAM: histidine kinase A domain protein; KEGG: dps:DP1487 similar to two-component system sensor histidine kinase (Ntr family) YP_001530214.1 PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain protein (CheY-like) YP_001530215.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase YP_001530216.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein YP_001530217.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: dde:Dde_3641 sulfate permease YP_001530218.1 PFAM: regulatory protein TetR; KEGG: dvl:Dvul_0665 transcriptional regulator, TetR family YP_001530219.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_0325 hypothetical protein YP_001530220.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dde:Dde_3640 putative glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_001530221.1 KEGG: cbu:CBU_1788 hypothetical protein YP_001530222.1 KEGG: sat:SYN_01067 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001530223.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: cbd:COXBU7E912_1322 ribbon-helix-helix protein, CopG family YP_001530224.1 PFAM: PilT protein domain protein; KEGG: cbd:COXBU7E912_1321 PIN domain protein YP_001530225.1 KEGG: sat:SYN_01037 exodeoxyribonuclease V alpha chain YP_001530226.1 KEGG: aba:Acid345_3756 hypothetical protein YP_001530227.1 KEGG: shm:Shewmr7_3900 hypothetical protein YP_001530228.1 KEGG: sfu:Sfum_0578 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001530229.1 KEGG: sat:SYN_01037 exodeoxyribonuclease V alpha chain; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001530230.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: gur:Gura_1632 DEAD/DEAH box helicase domain protein YP_001530231.1 PFAM: protein of unknown function DUF99; KEGG: dge:Dgeo_1005 protein of unknown function DUF99 YP_001530232.1 PFAM: histidine biosynthesis protein; KEGG: sfu:Sfum_3692 histidine biosynthesis YP_001530233.1 PFAM: FAD dependent oxidoreductase; KEGG: bha:BH1848 hypothetical protein YP_001530234.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 histidinol phosphatase/PHP family hydrolase YP_001530235.1 PFAM: protein of unknown function DUF151; KEGG: sfu:Sfum_0418 protein of unknown function DUF151 YP_001530236.1 KEGG: gme:Gmet_2296 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001530237.1 KEGG: gur:Gura_0388 hypothetical protein YP_001530238.1 KEGG: ppd:Ppro_0611 hypothetical protein YP_001530239.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001530240.1 KEGG: smd:Smed_4019 N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_001530241.1 KEGG: mxa:MXAN_0613 alkaline ceramidase YP_001530242.1 TIGRFAM: methyltransferase FkbM family; KEGG: ret:RHE_CH00768 lipopolysaccharide biosynthesis protein (SAM-dependent methyltransferase protein) YP_001530244.1 PFAM: lipid-binding START domain protein; KEGG: aha:AHA_2245 hypothetical protein YP_001530245.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: olu:OSTLU_1885 CaCA family transporter: sodium ion/potassium ion/calcium ion YP_001530246.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1739 putative 3-hydroxybutyryl-CoA dehydratase YP_001530247.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sfu:Sfum_1402 acyl-CoA dehydrogenase domain protein YP_001530248.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; KEGG: sfu:Sfum_1401 transcriptional regulator, TetR family YP_001530249.1 PFAM: ParB domain protein nuclease; KEGG: sfu:Sfum_1262 hypothetical protein YP_001530250.1 KEGG: ppd:Ppro_3066 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_001530251.1 PFAM: type IV pilus assembly PilZ YP_001530252.1 PFAM: cyclic nucleotide-binding; KEGG: rrs:RoseRS_0201 hypothetical protein YP_001530253.1 KEGG: dps:DP2776 gliding motility protein (MglA) YP_001530255.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: aba:Acid345_1951 malate dehydrogenase, NAD-dependent YP_001530256.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001530257.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001530258.1 KEGG: mgm:Mmc1_0100 nitrogen regulatory protein P-II YP_001530259.1 PFAM: protein of unknown function DUF1538; KEGG: mgm:Mmc1_0101 protein of unknown function DUF1538 YP_001530260.1 KEGG: abo:ABO_1443 hypothetical protein YP_001530261.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_04724 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_001530262.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: plt:Plut_1146 Na/Pi cotransporter II-related YP_001530263.1 KEGG: gme:Gmet_2920 hypothetical protein YP_001530264.1 KEGG: gme:Gmet_2921 hypothetical protein YP_001530265.1 KEGG: dps:DP3088 hypothetical protein YP_001530267.1 PFAM: conserved hypothetical protein; KEGG: dps:DP3089 hypothetical protein YP_001530268.1 KEGG: mav:MAV_2312 hypothetical protein YP_001530269.1 KEGG: msm:MSMEG_5149 conserved transmembrane protein YP_001530270.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_3428 tellurite resistance protein YP_001530271.1 KEGG: pub:SAR11_0819 bacterioferritin comigratory protein YP_001530272.1 KEGG: dde:Dde_2481 hypothetical protein YP_001530273.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0091 integral membrane sensor signal transduction histidine kinase YP_001530274.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sfu:Sfum_0649 pyruvate, water dikinase YP_001530275.1 PFAM: response regulator receiver; KEGG: gme:Gmet_2924 two component, sigma54 specific, transcriptional regulator, fis family YP_001530277.1 PFAM: response regulator receiver; KEGG: gsu:GSU0598 sigma-54 dependent DNA-binding response regulator YP_001530278.1 KEGG: sfu:Sfum_0654 response regulator receiver protein YP_001530279.1 KEGG: sfu:Sfum_0654 response regulator receiver protein YP_001530280.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: dps:DP1441 similar to sodium-dependent transporter YP_001530282.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_2923 helix-turn-helix, fis-type YP_001530284.1 PFAM: regulatory protein GntR HTH; KEGG: aci:ACIAD0844 putative transcriptional regulator (GntR-family) YP_001530285.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: ppr:PBPRB1949 hypothetical protein YP_001530286.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_3351 glycosyl transferase, family 2 YP_001530287.1 KEGG: hwa:HQ3524A protein transglucosylase YP_001530288.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pho:PH0819 methyltransferase YP_001530289.1 KEGG: rca:Rcas_3345 hypothetical protein YP_001530290.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0293 macrophage infectivity potentiator YP_001530291.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB12434 O-GlcNAc transferase YP_001530293.1 PFAM: glycosyl transferase family 2; KEGG: lbl:LBL_2451 glycosyltransferase YP_001530294.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001530295.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001530296.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001530297.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pho:PH0819 methyltransferase YP_001530298.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gur:Gura_3794 tetratricopeptide TPR_2 repeat protein YP_001530299.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gur:Gura_3794 tetratricopeptide TPR_2 repeat protein YP_001530300.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gur:Gura_3794 tetratricopeptide TPR_2 repeat protein YP_001530303.1 PFAM: peptidase C39 bacteriocin processing; KEGG: pap:PSPA7_3545 hypothetical protein YP_001530304.1 PFAM: Sporulation domain protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: aci:ACIAD0668 conserved hypothetical protein; putative signal peptide YP_001530305.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pap:PSPA7_3543 hypothetical protein YP_001530306.1 KEGG: mac:MA2525 WD40-repeat containing protein YP_001530307.1 in Methanocaldococcus jannaschii this enzyme is involved in conversion of 5-phospho-D-ribose-1-pyrophosphate to ribulose-1,5-bisphosphate using NAD as a cofactor; part of RubisCO pathway YP_001530308.1 PFAM: thiamine biosynthesis protein ThiC; KEGG: drm:Dred_2890 thiamine biosynthesis protein ThiC YP_001530309.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_0376 radical SAM domain protein YP_001530310.1 PFAM: AMMECR1 domain protein; protein of unknown function DUF52; KEGG: mgm:Mmc1_2152 protein of unknown function DUF52 YP_001530311.1 PFAM: Spermine synthase; KEGG: sfu:Sfum_1994 spermidine synthase YP_001530312.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1995 radical SAM domain protein YP_001530313.1 KEGG: sus:Acid_5892 radical SAM domain protein YP_001530314.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_001530315.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_001530316.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mbu:Mbur_1602 Fe-S protein, radical SAM family YP_001530317.1 PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20 YP_001530318.1 KEGG: sfu:Sfum_2085 hypothetical protein YP_001530319.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: gur:Gura_3134 leucyl-tRNA synthetase YP_001530320.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pca:Pcar_2039 ribonuclease, Rne/Rng family protein YP_001530322.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sfu:Sfum_1240 preprotein translocase, YajC subunit YP_001530323.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sat:SYN_01524 protein translocase subunit YP_001530324.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001530325.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gsu:GSU2550 DNA processing protein DprA YP_001530326.1 KEGG: sat:SYN_02798 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001530327.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: dde:Dde_0310 CBS YP_001530328.1 KEGG: pau:PA14_53310 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001530329.1 PFAM: histidine triad (HIT) protein; KEGG: mxa:MXAN_6566 HIT domain protein YP_001530331.1 KEGG: gsu:GSU1775 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001530332.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1774 cell division ABC transporter, permease protein FtsX, putative YP_001530333.1 PFAM: peptidase M23B; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: gur:Gura_1934 peptidase M23B YP_001530334.1 KEGG: gme:Gmet_1853 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001530335.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: gme:Gmet_1850 protein of unknown function DUF610, YibQ YP_001530336.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001530337.1 KEGG: rpb:RPB_0804 hemolysin-type calcium-binding region YP_001530338.1 PFAM: transposase IS4 family protein; KEGG: oan:Oant_4812 transposase IS4 family protein YP_001530339.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: sat:SYN_02546 outer membrane protein YP_001530342.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_2660 Fe-S oxidoreductase, putative coenzyme synthesis protein YP_001530344.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2585 glycosyl transferase, family 2 YP_001530346.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; NAD-dependent epimerase/dehydratase; aromatic amino acid beta-eliminating lyase/threonine aldolase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mja:MJ1066 spore coat polysaccharide biosynthesis protein C (SpsC) YP_001530348.1 PFAM: glycosyl transferase family 2; KEGG: ace:Acel_1211 dolichyl-phosphate beta-D-mannosyltransferase YP_001530351.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_0104 tetratricopeptide TPR_2 repeat protein YP_001530352.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001530353.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase YP_001530354.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: fal:FRAAL0298 putative F-S oxidoreductase; putative methyltransferase YP_001530355.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: sfu:Sfum_2115 sigma-70 region 2 domain protein YP_001530356.1 PFAM: TPR repeat-containing protein; Peptidoglycan-binding LysM; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_00192 tetratricopeptide repeat family protein YP_001530357.1 KEGG: ade:Adeh_4035 hypothetical protein YP_001530358.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_3245 UspA domain protein YP_001530359.1 KEGG: sfu:Sfum_1041 hypothetical protein YP_001530360.1 PFAM: GAF domain protein; KEGG: sfu:Sfum_1857 putative GAF sensor protein YP_001530361.1 PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: sfu:Sfum_0044 leucyltransferase YP_001530362.1 KEGG: pca:Pcar_2260 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001530363.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pla:Plav_2797 ATP-dependent Clp protease adaptor protein ClpS YP_001530364.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sfu:Sfum_1202 preprotein translocase, SecA subunit YP_001530365.1 PFAM: peptidase M23B; KEGG: dde:Dde_0243 peptidase, M23/M37 family YP_001530366.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_1952 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001530367.1 KEGG: tpt:Tpet_0617 putative transaldolase; TIGRFAM: putative transaldolase; PFAM: Transaldolase YP_001530368.1 SMART: TRASH domain protein; KEGG: dps:DP0429 hypothetical protein YP_001530369.1 KEGG: sus:Acid_0958 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001530370.1 PFAM: Fibronectin type III domain protein YP_001530371.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pca:Pcar_2418 argininosuccinate lyase YP_001530372.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001530373.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: sat:SYN_02156 ornithine carbamoyltransferase YP_001530374.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: gur:Gura_0226 acetylornithine and succinylornithine aminotransferase YP_001530375.1 KEGG: sfu:Sfum_0064 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_001530376.1 heat shock protein involved in degradation of misfolded proteins YP_001530377.1 heat shock protein involved in degradation of misfolded proteins YP_001530378.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: gur:Gura_4012 tyrosine recombinase XerC YP_001530379.1 KEGG: sfu:Sfum_0463 hypothetical protein YP_001530380.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mxa:MXAN_0147 putative acetyltransferase YP_001530381.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: atc:AGR_L_2714 probable acyl-CoA dehydrogenase YP_001530382.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: drm:Dred_2273 aldehyde ferredoxin oxidoreductase YP_001530383.1 PFAM: thiamineS protein; KEGG: drm:Dred_2272 hypothetical protein YP_001530384.1 PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein YP_001530385.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sfu:Sfum_2082 UBA/ThiF-type NAD/FAD binding protein YP_001530387.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mxa:MXAN_3955 serine/threonine protein kinase YP_001530388.1 KEGG: pol:Bpro_2976 hypothetical protein YP_001530390.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: gsu:GSU1126 phage SPO1 DNA polymerase-related protein YP_001530391.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mja:MJ0084 CODH nickel-insertion accessory protein (CooC) YP_001530392.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cch:Cag_0580 glutamate synthase (NADPH) small chain YP_001530393.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: cbe:Cbei_2448 positive regulator of sigma E, RseC/MucC YP_001530394.1 KEGG: gur:Gura_2149 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001530395.1 KEGG: mca:MCA0358 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_001530396.1 PFAM: glycosyl transferase group 1; KEGG: rba:RB12344 predicted glycosyltransferase YP_001530397.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: gme:Gmet_0942 DNA repair protein RecN YP_001530398.1 KEGG: tte:TTE2235 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_001530399.1 KEGG: ppd:Ppro_0853 metal-binding protein-like protein YP_001530401.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nmu:Nmul_A1524 endonuclease/exonuclease/phosphatase YP_001530402.1 PFAM: phospholipase D/Transphosphatidylase; SNARE associated Golgi protein; KEGG: nmu:Nmul_A1523 phospholipase D/transphosphatidylase YP_001530403.1 PFAM: heat shock protein Hsp20; KEGG: deh:cbdb_A909 HSP20 YP_001530404.1 KEGG: rci:RCIX1757 hypothetical protein YP_001530405.1 KEGG: sat:SYN_01420 hypothetical cytosolic protein YP_001530406.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mtp:Mthe_0953 dTDP-4-dehydrorhamnose reductase YP_001530407.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ade:Adeh_1645 enoyl-CoA hydratase/isomerase YP_001530408.1 KEGG: mjl:Mjls_5052 D-alanine-D-alanine ligase and related ATP-grasp enzymes-like YP_001530409.1 KEGG: abo:ABO_0204 hypothetical protein YP_001530412.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mka:MK0670 predicted NADH-flavin reductase YP_001530413.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: sfu:Sfum_2844 protein of unknown function DUF1722 YP_001530414.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001530415.1 KEGG: pca:Pcar_0010 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001530416.1 PFAM: Amidase; KEGG: dra:DR_0235 6-aminohexanoate-cyclic-dimer hydrolase YP_001530417.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001530418.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001530419.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: ypi:YpsIP31758_3164 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YP_001530420.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: hch:HCH_02688 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YP_001530421.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: maq:Maqu_1927 NADH:ubiquinone oxidoreductase, subunit E YP_001530422.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001530423.1 PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein YP_001530424.1 PFAM: protein of unknown function DUF161; KEGG: dvl:Dvul_0531 protein of unknown function DUF161 YP_001530425.1 PFAM: regulatory protein TetR; KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family YP_001530426.1 SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: gka:GK0482 hypothetical protein YP_001530427.1 KEGG: sfu:Sfum_0611 hypothetical protein YP_001530428.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_0610 molybdopterin oxidoreductase Fe4s4 region YP_001530429.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001530430.1 PFAM: Polysulphide reductase NrfD; KEGG: sfu:Sfum_0608 molybdopterin oxidoreductase, transmembrane subunit, putative YP_001530432.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001530433.1 PFAM: SNARE associated Golgi protein; KEGG: abo:ABO_2183 mercuric reductase, putative YP_001530434.1 PFAM: protein of unknown function DUF169; KEGG: sth:STH972 hypothetical protein YP_001530435.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ttj:TTHA0241 oxidoreductase, short-chain dehydrogenase/reductase family YP_001530436.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nfa:nfa29430 putative enoyl-CoA hydratase/isomerase family protein YP_001530437.1 PFAM: beta-lactamase domain protein; KEGG: swo:Swol_0438 hypothetical protein YP_001530438.1 PFAM: AMP-dependent synthetase and ligase; KEGG: afu:AF0262 medium-chain acyl-CoA ligase YP_001530439.1 KEGG: cbf:CLI_1563 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001530440.1 KEGG: gur:Gura_0557 hypothetical protein YP_001530441.1 KEGG: sfr:Sfri_2495 hypothetical protein YP_001530442.1 KEGG: gfo:GFO_2160 hypothetical protein YP_001530443.1 KEGG: hch:HCH_04427 hypothetical protein YP_001530444.1 TIGRFAM: addiction module antidote protein, HigA family; SMART: helix-turn-helix domain protein; KEGG: sus:Acid_0689 plasmid maintenance system antidote protein, XRE family YP_001530445.1 KEGG: gur:Gura_0390 hypothetical protein YP_001530446.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU0238 radical SAM domain protein YP_001530447.1 KEGG: lbl:LBL_2068 hypothetical protein YP_001530448.1 KEGG: sus:Acid_4724 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_001530449.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: sat:SYN_03523 pyruvate formate-lyase activating enzyme YP_001530450.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001530451.1 PFAM: protein of unknown function UPF0027; KEGG: pca:Pcar_0019 hypothetical protein YP_001530453.1 KEGG: gme:Gmet_2983 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001530454.1 PFAM: chemotaxis sensory transducer; KEGG: lic:LIC11523 chemotaxis protein YP_001530455.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sfu:Sfum_4085 adenylate/guanylate cyclase YP_001530456.1 PFAM: dihydropteroate synthase DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase YP_001530457.1 PFAM: histone deacetylase superfamily; KEGG: sat:SYN_01017 deacetylase family protrein YP_001530459.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_2191 hypothetical protein YP_001530460.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001530461.1 KEGG: pap:PSPA7_3748 hypothetical protein YP_001530462.1 PFAM: ATP-NAD/AcoX kinase; KEGG: gsu:GSU2065 ATP-NAD kinase YP_001530463.1 PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dvl:Dvul_2475 chorismate mutase YP_001530464.1 KEGG: sfu:Sfum_0040 hypothetical protein YP_001530465.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sfu:Sfum_1597 beta-lactamase domain protein YP_001530466.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: gme:Gmet_0367 cell divisionFtsK/SpoIIIE YP_001530467.1 KEGG: pla:Plav_2490 hypothetical protein YP_001530469.1 KEGG: mbn:Mboo_1630 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001530470.1 PFAM: acyl-ACP thioesterase; KEGG: cth:Cthe_3072 acyl-ACP thioesterase YP_001530472.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: pgi:PG0692 putative gamma-aminobutyrate metabolism dehydratase/isomerase YP_001530473.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP1665c hypothetical protein YP_001530474.1 PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_0573 putative glycosyl transferase YP_001530475.1 KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein YP_001530476.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_001530477.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cte:CT0944 hypothetical protein YP_001530478.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rrs:RoseRS_4216 cobyrinic acid a,c-diamide synthase YP_001530480.1 PFAM: beta-lactamase domain protein; KEGG: bay:RBAM_021920 YqjP YP_001530481.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dps:DP2930 probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase YP_001530483.1 KEGG: tcx:Tcr_1420 hypothetical protein YP_001530485.1 PFAM: PemK family protein; KEGG: gur:Gura_3378 transcriptional modulator of MazE/toxin, MazF YP_001530486.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: aeh:Mlg_1787 prevent-host-death family protein YP_001530487.1 TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: Addiction module toxin Txe/YoeB; KEGG: gur:Gura_1444 addiction module toxin, Txe/YoeB family YP_001530488.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gur:Gura_2007 3-beta hydroxysteroid dehydrogenase/isomerase YP_001530489.1 KEGG: cvi:CV_1605 hypothetical protein YP_001530490.1 KEGG: gvi:gll1931 hypothetical protein YP_001530491.1 KEGG: mtp:Mthe_1494 protein of unknown function DUF369 YP_001530493.1 PFAM: Rubrerythrin; KEGG: ppd:Ppro_1965 rubrerythrin YP_001530494.1 PFAM: FAD linked oxidase domain protein; KEGG: tde:TDE0138 alkyldihydroxyacetonephosphate synthase, putative YP_001530495.1 PFAM: carbohydrate kinase FGGY; KEGG: tme:Tmel_1009 carbohydrate kinase, FGGY YP_001530496.1 PFAM: FAD dependent oxidoreductase; KEGG: pap:PSPA7_2133 probable FAD-dependent glycerol-3-phosphate dehydrogenase YP_001530497.1 PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; KEGG: aha:AHA_2443 fatty acid metabolism transcriptional regulator FadR YP_001530498.1 TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: bta:782907 similar to PRDX3 protein YP_001530499.1 KEGG: nmu:Nmul_A0935 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001530501.1 PFAM: protein of unknown function UPF0153; KEGG: sfu:Sfum_1054 protein of unknown function UPF0153 YP_001530502.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dps:DP2495 similar to 3-oxoacyl-[acyl-carrier protein] reductase YP_001530503.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_00428 oxalate/formate antiporter YP_001530504.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sfu:Sfum_1297 RNA methyltransferase, TrmH family, group 1 YP_001530505.1 PFAM: nucleoside diphosphate kinase; KEGG: dvl:Dvul_0925 nucleoside-diphosphate kinase YP_001530506.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein YP_001530507.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_1348 methyltransferase type 11 YP_001530508.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU3016 B12 binding domain protein/radical SAM domain protein YP_001530509.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1372 putative ABC-transport system ATP-binding protein YP_001530510.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein YP_001530511.1 KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein YP_001530512.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sat:SYN_00079 ABC-type sugar transport systems, ATPase component YP_001530513.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_2086 related to sulfate ABC transporter, permease protein YP_001530514.1 PFAM: extracellular solute-binding protein family 1; KEGG: pca:Pcar_2087 putative sulfate transport system substrate-binding protein YP_001530515.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_1380 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001530516.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_2265 helix-turn-helix domain protein YP_001530517.1 PFAM: HipA domain protein; KEGG: eli:ELI_14765 hypothetical protein YP_001530518.1 PFAM: transposase IS4 family protein; KEGG: oan:Oant_4812 transposase IS4 family protein YP_001530519.1 PFAM: protein of unknown function DUF497; KEGG: rpb:RPB_3765 protein of unknown function DUF497 YP_001530520.1 KEGG: noc:Noc_0086 helix-turn-helix protein, CopG YP_001530522.1 PFAM: heat shock protein Hsp20; KEGG: sfu:Sfum_1743 heat shock protein HSP20 YP_001530523.1 PFAM: heat shock protein Hsp20; KEGG: sfu:Sfum_2366 heat shock protein HSP20 YP_001530524.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein YP_001530525.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sat:SYN_02089 thioredoxin YP_001530526.1 KEGG: sfu:Sfum_0341 hypothetical protein YP_001530527.1 PFAM: Rubrerythrin; KEGG: gsu:GSU2814 rubrerythrin YP_001530528.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sfu:Sfum_0340 flavodoxin/nitric oxide synthase YP_001530529.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sfu:Sfum_0339 cytochrome bd ubiquinol oxidase, subunit I YP_001530530.1 KEGG: gur:Gura_2162 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_001530531.1 PFAM: cytochrome c class III; KEGG: gur:Gura_4121 hypothetical protein YP_001530532.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mtp:Mthe_0744 nitrite and sulphite reductase 4Fe-4S region YP_001530533.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein YP_001530534.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: pca:Pcar_2795 rubredoxin-oxygen oxidoreductase, putative YP_001530535.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3217 hypothetical protein YP_001530537.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001530538.1 KEGG: mxa:MXAN_2032 hypothetical protein YP_001530539.1 PFAM: dihydrouridine synthase DuS; KEGG: dps:DP2911 hypothetical protein YP_001530541.1 PFAM: O-methyltransferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_1733 O-methyltransferase, family 2 YP_001530542.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pcr:Pcryo_0864 short-chain dehydrogenase/reductase SDR YP_001530543.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: bsu:BG10546 branched-chain amino acid aminotransferase YP_001530544.1 PFAM: protein of unknown function DUF296; KEGG: tte:TTE0283 predicted DNA-binding proteins with PD1-like DNA-binding motif YP_001530545.1 PFAM: protein of unknown function UPF0153; KEGG: dps:DP2887 hypothetical protein YP_001530546.1 PFAM: beta-lactamase; KEGG: psp:PSPPH_1407 carboxylesterase YP_001530547.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: ppd:Ppro_3063 dihydrodipicolinate synthase YP_001530548.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat YP_001530549.1 KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_001530550.1 KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_001530551.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B YP_001530552.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dps:DP2763 probable cobyrinic acid A,C-diamide synthase (CobB) YP_001530553.1 KEGG: sfu:Sfum_1909 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001530554.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rca:Rcas_0448 histidinol-phosphate phosphatase family protein YP_001530555.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pca:Pcar_1224 rare lipoprotein A, putative YP_001530556.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: abo:ABO_1472 hypothetical protein YP_001530557.1 KEGG: pau:PA14_54760 hypothetical protein YP_001530558.1 KEGG: pca:Pcar_1340 hypothetical protein YP_001530559.1 KEGG: mkm:Mkms_4753 Mur ligase, middle domain protein YP_001530560.1 PFAM: ExsB family protein; KEGG: sfu:Sfum_3619 ExsB family protein YP_001530561.1 KEGG: bxe:Bxe_B0414 hypothetical protein YP_001530563.1 PFAM: von Willebrand factor type A; KEGG: aeh:Mlg_2839 von Willebrand factor, type A YP_001530564.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ YP_001530565.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: amt:Amet_1699 TraB family protein YP_001530566.1 KEGG: ppd:Ppro_1407 type IV pilus assembly PilZ YP_001530567.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cdf:CD0009 anti-sigma-B factor antagonist YP_001530568.1 KEGG: nfa:nfa34590 putative peptide synthetase YP_001530569.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: sde:Sde_1315 hypothetical protein YP_001530571.1 PFAM: cell wall hydrolase/autolysin; KEGG: sus:Acid_4586 N-acetylmuramoyl-L-alanine amidase YP_001530572.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: gme:Gmet_1874 trigger factor YP_001530573.1 KEGG: mta:Moth_0528 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_001530574.1 binds and unfolds substrates as part of the ClpXP protease YP_001530575.1 KEGG: sfu:Sfum_0098 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001530576.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pth:PTH_2122 ATPase with chaperone activity, ATP-binding subunit YP_001530577.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: bcl:ABC3002 SsrA RNA (tmRNA)-binding protein YP_001530578.1 KEGG: sfu:Sfum_0772 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein YP_001530579.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mms:mma_0174 sugar transport PTS system phosphocarrier protein HPr YP_001530580.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3 YP_001530581.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ppd:Ppro_3226 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001530582.1 KEGG: sfu:Sfum_0127 hypothetical protein YP_001530584.1 PFAM: Primase 1; Bifunctional DNA primase/polymerase; KEGG: rxy:Rxyl_1598 hypothetical protein YP_001530586.1 KEGG: oan:Oant_4320 hypothetical protein YP_001530589.1 PFAM: integrase family protein; KEGG: pfu:PF1868 integrase-recombinase protein YP_001530590.1 KEGG: ppd:Ppro_2294 hypothetical protein YP_001530591.1 PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3995 putative transcriptional regulator, XRE family YP_001530593.1 KEGG: ddi:DDB_0232136 villin YP_001530595.1 KEGG: rme:Rmet_6120 hypothetical protein YP_001530596.1 PFAM: regulatory protein TetR; KEGG: sco:SCO6121 transcriptional regulator YP_001530598.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO0137 hypothetical protein YP_001530599.1 KEGG: tet:TTHERM_00822030 hypothetical protein YP_001530600.1 KEGG: rpa:RPA1621 hypothetical protein YP_001530601.1 KEGG: ppd:Ppro_0225 hypothetical protein YP_001530604.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: neu:NE2499 DEAD/DEAH box helicase YP_001530605.1 PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: neu:NE2497 type I restriction modification enzyme methylase subunit YP_001530606.1 PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I YP_001530607.1 KEGG: neu:NE2495 ABC transporter YP_001530608.1 KEGG: neu:NE2494 hypothetical protein YP_001530609.1 PFAM: ribonuclease H; KEGG: dps:DP0910 probable ribonuclease H YP_001530610.1 KEGG: bfr:BF0634 hypothetical protein YP_001530612.1 KEGG: maq:Maqu_4123 hypothetical protein YP_001530614.1 PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein YP_001530615.1 KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001530616.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001530617.1 KEGG: sfu:Sfum_1932 hypothetical protein YP_001530618.1 KEGG: gme:Gmet_0777 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001530619.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: sat:SYN_02713 response regulator containing sigma 54 interaction domain YP_001530620.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: sfu:Sfum_3033 putative methyltransferase YP_001530621.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001530622.1 KEGG: sat:SYN_01000 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001530623.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: gur:Gura_4160 TrkA-N domain protein YP_001530624.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: chy:CHY_0730 5-formyltetrahydrofolate cyclo-ligase family protein YP_001530625.1 KEGG: sfu:Sfum_1424 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_001530626.1 KEGG: sfu:Sfum_1930 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_001530627.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01414 tetratricopeptide repeat family protein YP_001530628.1 PFAM: Abortive infection protein; KEGG: lsl:LSL_1720 hypothetical membrane spanning protein YP_001530629.1 PFAM: D-alanine--D-alanine ligase domain protein; KEGG: amt:Amet_2954 D-alanine--D-alanine ligase YP_001530630.1 PFAM: HicB family protein; KEGG: bur:Bcep18194_B0163 HicB family protein YP_001530631.1 KEGG: cjk:jk2038 hypothetical protein YP_001530632.1 KEGG: cph:Cpha266_0290 hypothetical protein YP_001530633.1 KEGG: gur:Gura_0562 hypothetical protein YP_001530634.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: abo:ABO_2696 oxidoreductase, putative YP_001530635.1 PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region YP_001530636.1 PFAM: peptidase M50; KEGG: sfu:Sfum_0681 peptidase M50 YP_001530637.1 KEGG: cth:Cthe_0686 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_001530638.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: gme:Gmet_1959 chromosome segregation and condensation protein ScpA YP_001530639.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: gur:Gura_2248 putative transcriptional regulator YP_001530640.1 PFAM: cyclic nucleotide-binding; KEGG: mxa:MXAN_4398 protein phosphatase/cyclic nucleotide-binding domain protein YP_001530641.1 PFAM: Radical SAM domain protein; KEGG: dps:DP1477 similar to heme biosynthesis protein YP_001530642.1 KEGG: mxa:MXAN_2248 hypothetical protein YP_001530643.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: aeh:Mlg_0734 response regulator receiver protein YP_001530644.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein YP_001530645.1 KEGG: dvl:Dvul_0956 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase YP_001530646.1 KEGG: pna:Pnap_3111 hypothetical protein YP_001530647.1 PFAM: regulatory protein GntR HTH; KEGG: pen:PSEEN1766 transcriptional regulator (GntR-family) YP_001530649.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cdf:CD0398 subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase YP_001530650.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: csc:Csac_0380 2-hydroxyglutaryl-CoA dehydratase, D-component YP_001530651.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: afu:AF1959 (R)-hydroxyglutaryl-CoA dehydratase activator (HgdC) YP_001530652.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1005 CoA enzyme activase YP_001530654.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dsy:DSY2316 hypothetical protein YP_001530655.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: mta:Moth_1006 2-hydroxyglutaryl-CoA dehydratase, D-component YP_001530656.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1005 CoA enzyme activase YP_001530657.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mmz:MmarC7_0224 cobyrinic acid ac-diamide synthase YP_001530659.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_001530661.1 PFAM: SNARE associated Golgi protein; KEGG: ath:AT5G19070 unknown protein YP_001530662.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: sat:SYN_00437 cell division protein YP_001530663.1 PFAM: cell division protein FtsA; KEGG: mxa:MXAN_5599 cell division protein FtsA YP_001530664.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: gsu:GSU3065 cell division protein FtsQ YP_001530665.1 KEGG: cbf:CLI_3562 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001530666.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pca:Pcar_2201 UDP-N-acetylmuramate--alanine ligase YP_001530667.1 KEGG: sat:SYN_01746 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_001530668.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: gme:Gmet_0411 cell cycle protein YP_001530669.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aba:Acid345_3631 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001530670.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001530671.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sat:SYN_01742 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001530672.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: gme:Gmet_0407 UDP-N-acetylmuramyl-tripeptide synthetase YP_001530673.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gur:Gura_3980 peptidoglycan glycosyltransferase YP_001530674.1 KEGG: sat:SYN_01738 hypothetical membrane protein YP_001530675.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pca:Pcar_2210 S-adenosyl-methyltransferase MraW YP_001530676.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: cth:Cthe_0982 MraZ protein YP_001530677.1 KEGG: sat:SYN_01419 putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase / fibronectin/fibrinogen-binding protein YP_001530678.1 PFAM: peptidase S45 penicillin amidase; KEGG: pmy:Pmen_1414 penicillin amidase YP_001530679.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: lil:LA3604 lysophospholipase YP_001530680.1 PFAM: GTPase EngC; KEGG: rpe:RPE_4500 ribosome small subunit-dependent GTPase A YP_001530681.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mac:MA0166 copper P-type ATPase YP_001530683.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: afw:Anae109_3345 hypothetical protein YP_001530684.1 KEGG: nis:NIS_0042 hypothetical protein YP_001530685.1 PFAM: Rhodanese domain protein; KEGG: lxx:Lxx10550 thiosulfate sulfurtransferase YP_001530686.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tko:TK0815 peroxiredoxin, AhpC/TSA family YP_001530687.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sat:SYN_02214 response regulator with sigma 54 interaction domain YP_001530688.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: sat:SYN_02215 signal transduction histidine kinase YP_001530690.1 PFAM: response regulator receiver; KEGG: ssp:SSP1073 alkaline phosphatase synthesis transcriptional regulatory protein YP_001530691.1 KEGG: gme:Gmet_0010 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001530692.1 KEGG: sfu:Sfum_2807 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001530693.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001530694.1 PFAM: Domain of unknown function DUF1844; KEGG: sat:SYN_03047 hypothetical cytosolic protein YP_001530695.1 KEGG: gur:Gura_4295 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001530696.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: gme:Gmet_2849 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_001530697.1 KEGG: sat:SYN_02767 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001530698.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pca:Pcar_2003 50S ribosomal protein L25 YP_001530699.1 PFAM: peptidyl-tRNA hydrolase; KEGG: tte:TTE2567 peptidyl-tRNA hydrolase YP_001530700.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001530701.1 PFAM: transcription factor CarD; KEGG: ade:Adeh_1271 transcriptional regulator, CarD family YP_001530702.1 KEGG: sfu:Sfum_3657 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001530703.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro05644 dehydrogenase YP_001530704.1 KEGG: abo:ABO_2455 hypothetical protein YP_001530705.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; Fe-S cluster domain protein; KEGG: amt:Amet_3096 molybdopterin oxidoreductase YP_001530706.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: yen:YE1994 hypothetical protein YP_001530707.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_001530708.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dvl:Dvul_0520 FMN-binding domain protein YP_001530709.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dvl:Dvul_0521 electron transport complex, RnfABCDGE type, D subunit YP_001530710.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0581 electron transport complex protein RnfC, putative YP_001530711.1 KEGG: dde:Dde_0580 cytochrome c family protein YP_001530712.1 KEGG: sde:Sde_1882 transcriptional regulatory protein YP_001530713.1 KEGG: sfu:Sfum_0116 conserved hypothetical cytosolic protein YP_001530715.1 PFAM: conserved hypothetical protein; KEGG: sat:SYN_01766 lysine decarboxylase family YP_001530716.1 KEGG: sfu:Sfum_2616 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001530717.1 KEGG: gsu:GSU2261 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_001530718.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gme:Gmet_2352 oxidoreductase-like YP_001530719.1 PFAM: protein of unknown function DUF1009; KEGG: sfu:Sfum_3750 protein of unknown function DUF1009 YP_001530720.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: bam:Bamb_2040 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase YP_001530721.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: mxa:MXAN_4725 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001530722.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: gme:Gmet_2355 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD YP_001530723.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gur:Gura_3236 outer membrane chaperone Skp (OmpH) YP_001530724.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sat:SYN_00921 outer membrane protein YP_001530725.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2269 ABC transporter, ATP-binding protein YP_001530726.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: sfu:Sfum_3743 lipoprotein releasing system, transmembrane protein, LolC/E family YP_001530727.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gsu:GSU2271 lysyl-tRNA synthetase YP_001530728.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU1494 sensory box histidine kinase YP_001530729.1 PFAM: type II secretion system protein; KEGG: dps:DP2782 probable type 4 fimbrial assembly protein (PilC) YP_001530730.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001530731.1 PFAM: conserved hypothetical protein; KEGG: pca:Pcar_2153 hypothetical protein YP_001530732.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001530733.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein YP_001530734.1 PFAM: PfkB domain protein; KEGG: bfs:BF4173 putative PfkB family carbohydrate kinase YP_001530735.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: ade:Adeh_1655 hypothetical protein YP_001530736.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: abo:ABO_0055 acyltransferase YP_001530737.1 PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_1608 histone-like DNA-binding protein YP_001530738.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: sfu:Sfum_3247 hypothetical protein YP_001530739.1 KEGG: sfu:Sfum_1905 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001530740.1 PFAM: glycosyl transferase family 2; KEGG: sma:SAV3935 hypothetical protein YP_001530741.1 KEGG: sth:STH1479 putative peptidase YP_001530742.1 PFAM: Phosphoglycerate mutase; KEGG: mgm:Mmc1_2682 putative phosphohistidine phosphatase, SixA YP_001530744.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swo:Swol_0650 putative crotonase YP_001530746.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: amt:Amet_4527 putative TIM-barrel protein, nifR3 family YP_001530748.1 PFAM: CoA-binding domain protein; KEGG: sat:SYN_02520 CoA binding protein YP_001530750.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: pca:Pcar_2347 desulfoferrodoxin YP_001530751.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: pca:Pcar_0673 metalloprotease, putative YP_001530753.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase YP_001530754.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_2936 glyoxalase/bleomycin resistance protein/dioxygenase YP_001530755.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001530756.1 PFAM: regulatory protein ArsR; KEGG: sat:SYN_00341 transcriptional regulator, ArsR family YP_001530757.1 PFAM: permease; KEGG: sat:SYN_00339 predicted permease YP_001530758.1 TIGRFAM: redox-active disulfide protein 2; KEGG: sat:SYN_00338 glutaredoxin-like protein YP_001530759.1 KEGG: cte:CT1158 hypothetical protein YP_001530760.1 PFAM: Fe-S cluster domain protein; KEGG: sfu:Sfum_3600 Fe-S cluster domain protein YP_001530761.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pca:Pcar_1772 protein tyrosine phosphatase YP_001530762.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: rba:RB783 probable integral membrane efflux protein YP_001530763.1 PFAM: Rhodanese domain protein; KEGG: sfu:Sfum_3059 rhodanese domain protein YP_001530764.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sat:SYN_00225 cobalt-zinc-cadmium resistance protein YP_001530765.1 PFAM: DoxX family protein; KEGG: sfu:Sfum_3388 DoxX family protein YP_001530766.1 PFAM: Thioredoxin domain; KEGG: sfu:Sfum_3604 thioredoxin domain YP_001530767.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: sfu:Sfum_3605 cytochrome c biogenesis protein, transmembrane region YP_001530768.1 PFAM: protein of unknown function UPF0153; KEGG: rci:RRC161 hypothetical protein YP_001530769.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: dvl:Dvul_1455 plasmid maintenance system antidote protein, XRE family YP_001530770.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_0570 plasmid maintenance system killer YP_001530771.1 PFAM: protein of unknown function DUF81; KEGG: dvu:DVU0770 hypothetical protein YP_001530772.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: sfu:Sfum_3173 transcriptional regulator, TetR family YP_001530773.1 PFAM: protein of unknown function DUF169; KEGG: sfu:Sfum_3174 hypothetical protein YP_001530774.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sat:SYN_02075 acriflavin resistance periplasmic protein YP_001530775.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sat:SYN_02074 acriflavin resistance plasma membrane protein YP_001530776.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02073 type I secretion outer membrane protein YP_001530777.1 KEGG: reh:H16_A1139 outer membrane phospholipase A YP_001530778.1 PFAM: Ankyrin; peptidase C14 caspase catalytic subunit p20; KEGG: mag:amb1722 hypothetical protein YP_001530779.1 PFAM: Ankyrin; peptidase C14 caspase catalytic subunit p20; KEGG: mag:amb0621 hypothetical protein YP_001530780.1 PFAM: Ankyrin; peptidase C14 caspase catalytic subunit p20; KEGG: mag:amb2835 uncharacterized protein containing caspase domain YP_001530781.1 KEGG: ttj:TTHA1766 S-layer-like protein YP_001530782.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mma:MM_2722 dCMP deaminase YP_001530783.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: nfa:nfa35480 putative acyl-CoA dehydrogenase YP_001530784.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: swo:Swol_0788 butyryl-CoA dehydrogenase YP_001530785.1 KEGG: mpa:MAP1727 hypothetical protein YP_001530786.1 PFAM: integrase family protein; KEGG: sat:SYN_00484 integrase YP_001530791.1 TIGRFAM: phage/plasmid primase, P4 family; KEGG: rme:Rmet_2662 phage/plasmid primase P4-like protein YP_001530795.1 KEGG: cjr:CJE0217 hypothetical protein YP_001530796.1 PFAM: DNA repair protein RadC; KEGG: mma:MM_2791 DNA repair protein YP_001530797.1 KEGG: dar:Daro_2292 hypothetical protein YP_001530799.1 PFAM: UvrD/REP helicase; KEGG: amt:Amet_0941 ATP-dependent DNA helicase PcrA YP_001530801.1 KEGG: ade:Adeh_3553 hypothetical protein YP_001530802.1 PFAM: zinc finger SWIM domain protein; KEGG: rxy:Rxyl_0042 hypothetical protein YP_001530803.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: hit:NTHI1490 single-strand binding protein YP_001530805.1 PFAM: N-6 DNA methylase; KEGG: deh:cbdb_A104 putative type I restriction-modification system methylation subunit YP_001530806.1 PFAM: restriction modification system DNA specificity domain; KEGG: yps:YPTB3881 possible restriction modification enzyme YP_001530807.1 KEGG: deh:cbdb_A106 restriction enzymes type I helicase subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001530808.1 PFAM: protein of unknown function DUF45; KEGG: drm:Dred_2744 protein of unknown function DUF45 YP_001530809.1 KEGG: sfu:Sfum_0785 hypothetical protein YP_001530810.1 KEGG: vei:Veis_1817 hypothetical protein YP_001530812.1 PFAM: nuclease (SNase domain protein); KEGG: dvl:Dvul_2575 nuclease (SNase domain protein) YP_001530813.1 PFAM: SEC-C motif domain protein; KEGG: aba:Acid345_2062 hypothetical protein YP_001530815.1 KEGG: ppd:Ppro_0225 hypothetical protein YP_001530817.1 KEGG: ter:Tery_1656 hypothetical protein YP_001530819.1 KEGG: net:Neut_2558 hypothetical protein YP_001530822.1 KEGG: chu:CHU_1244 hypothetical protein YP_001530823.1 PFAM: protein of unknown function DUF1232 YP_001530827.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_001530828.1 KEGG: bbr:BB3524 phage-related hypothetical protein YP_001530829.1 KEGG: ppd:Ppro_0833 hypothetical protein YP_001530831.1 KEGG: amt:Amet_0962 hypothetical protein YP_001530833.1 KEGG: sfu:Sfum_2425 hypothetical protein YP_001530834.1 PFAM: integrase family protein; KEGG: sat:SYN_02227 integrase family protein YP_001530835.1 KEGG: cph:Cpha266_1213 ATPase, AAA+ superfamily YP_001530836.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VV2297 hypothetical protein YP_001530837.1 KEGG: dsy:DSY1510 hypothetical protein YP_001530838.1 PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY3647 hypothetical protein YP_001530839.1 KEGG: pla:Plav_0433 hypothetical protein YP_001530841.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: chu:CHU_2279 PhoH-related protein YP_001530842.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: cbf:CLI_1700 hypothetical protein YP_001530843.1 KEGG: dsy:DSY3745 hypothetical protein YP_001530844.1 PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: tpe:Tpen_1468 methionine synthase YP_001530845.1 PFAM: regulatory protein TetR; KEGG: pst:PSPTO_4302 transcriptional regulator, TetR family YP_001530847.1 KEGG: sfu:Sfum_0349 hypothetical protein YP_001530848.1 PFAM: glutaredoxin; KEGG: sfu:Sfum_0348 glutaredoxin YP_001530849.1 PFAM: nitroreductase; KEGG: dps:DP2706 similar to nitroreductase YP_001530851.1 PFAM: protein of unknown function DUF374; KEGG: sat:SYN_02433 hypothetical lipoprotein YP_001530852.1 PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_0246 peptidase M48, Ste24p YP_001530853.1 PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cte:CT0404 ATP-dependent Clp protease, ATP-binding subunit Clpx YP_001530854.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_00582 transcriptional regulator YP_001530855.1 PFAM: carbohydrate kinase FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase YP_001530856.1 PFAM: Semialdehyde dehydrogenase NAD - binding; Saccharopine dehydrogenase; KEGG: afu:AF1588 hypothetical protein YP_001530857.1 KEGG: lpf:lpl0180 hypothetical protein YP_001530858.1 PFAM: Domain of unknown function DUF1848; KEGG: cth:Cthe_0329 hypothetical protein YP_001530859.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001530860.1 PFAM: CBS domain containing protein; protein of unknown function DUF190; KEGG: rrs:RoseRS_2494 CBS domain containing protein YP_001530861.1 PFAM: helix-turn-helix domain protein; KEGG: mem:Memar_1391 protein of unknown function DUF955 YP_001530862.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Heat shock protein 70; SMART: Tetratricopeptide domain protein; KEGG: bth:BT_4602 chaperone protein DnaK YP_001530863.1 TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases; KEGG: pca:Pcar_0956 hypothetical protein YP_001530864.1 TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: pca:Pcar_0957 hypothetical protein YP_001530865.1 TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: pca:Pcar_0958 hypothetical protein YP_001530866.1 TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: pca:Pcar_0959 CRISPR-associated protein, Ct1975 family YP_001530867.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: pca:Pcar_0960 hypothetical protein YP_001530868.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: pca:Pcar_0961 hypothetical protein YP_001530869.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRC0034 hypothetical protein YP_001530870.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: csa:Csal_0233 CRISPR-associated protein, Cas2 YP_001530872.1 PFAM: Forkhead-associated protein; EAL domain protein; KEGG: rba:RB12766 conserved hypothetical protein-putative EAL domain protein YP_001530873.1 TIGRFAM: Addiction module antidote protein HI1420; KEGG: bxe:Bxe_B0861 predicted transcriptional regulator YP_001530874.1 KEGG: sfu:Sfum_3020 hypothetical protein YP_001530875.1 PFAM: Patatin; KEGG: tcx:Tcr_0488 patatin YP_001530876.1 SMART: regulatory protein AsnC/Lrp family; KEGG: dsy:DSY2220 hypothetical protein YP_001530877.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: pla:Plav_2878 excinuclease ABC C subunit domain protein YP_001530878.1 KEGG: ter:Tery_2721 hypothetical protein YP_001530879.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_2471 radical SAM domain protein YP_001530880.1 KEGG: hha:Hhal_2262 hypothetical protein YP_001530881.1 PFAM: Protein of unknown function DUF895, eukaryotic; major facilitator superfamily MFS_1; KEGG: mmq:MmarC5_0835 major facilitator superfamily MFS_1 YP_001530882.1 PFAM: protein of unknown function DUF374; KEGG: sat:SYN_02433 hypothetical lipoprotein YP_001530883.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dps:DP1476 similar to cytidine and deoxycytidylate deaminase family protein YP_001530884.1 PFAM: cytochrome B561; KEGG: sfu:Sfum_0091 cytochrome b561 YP_001530885.1 KEGG: sfu:Sfum_0090 cytochrome c family protein YP_001530886.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO1847 AMP-binding enzyme YP_001530887.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll7929 ABC transporter ATP-binding protein YP_001530888.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0622 ABC transporter related YP_001530889.1 KEGG: rpb:RPB_3339 extracellular ligand-binding receptor YP_001530890.1 PFAM: inner-membrane translocator; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease protein YP_001530891.1 PFAM: inner-membrane translocator; KEGG: bbr:BB2287 high-affinity branched-chain amino acid transport system permease protein YP_001530892.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: mbu:Mbur_0646 magnesium and cobalt transport protein CorA YP_001530893.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dvl:Dvul_1587 MscS mechanosensitive ion channel YP_001530894.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2857 hypothetical protein YP_001530895.1 KEGG: ppd:Ppro_1978 protein of unknown function DUF395, YeeE/YedE YP_001530896.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sfu:Sfum_4003 MscS mechanosensitive ion channel YP_001530897.1 KEGG: dde:Dde_3211 split soret cytochrome c precursor YP_001530898.1 KEGG: sfu:Sfum_1360 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001530899.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: mja:MJ0536 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit YP_001530900.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: ppd:Ppro_2324 thiamine pyrophosphate enzyme domain protein TPP-binding YP_001530901.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sfu:Sfum_1166 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001530902.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02497 ferridoxin YP_001530903.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2999 oxygen-independent coproporphyrinogen III oxidase putative YP_001530904.1 PFAM: NHL repeat containing protein; TPR repeat-containing protein; Fibronectin type III domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2986 PA14 domain protein YP_001530907.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU1631 metallo-beta-lactamase family protein YP_001530908.1 KEGG: gsu:GSU1595 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001530909.1 KEGG: sfu:Sfum_1234 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001530910.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001530911.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: gme:Gmet_1589 tRNA pseudouridine synthase B YP_001530912.1 PFAM: phosphoesterase RecJ domain protein; KEGG: gsu:GSU1590 DHH family/DHHA1 domain protein YP_001530913.1 PFAM: ribosome-binding factor A; KEGG: gsu:GSU1589 ribosome-binding factor A YP_001530914.1 PFAM: protein of unknown function DUF503; KEGG: sat:SYN_01786 hypothetical cytosolic protein YP_001530915.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; KEGG: sfu:Sfum_1228 translation initiation factor IF-2 YP_001530916.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001530917.1 PFAM: protein of unknown function DUF150; KEGG: sfu:Sfum_1226 protein of unknown function DUF150 YP_001530918.1 PFAM: regulatory protein MerR; KEGG: sus:Acid_0018 transcriptional regulator, MerR family YP_001530919.1 KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_001530920.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001530921.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001530922.1 PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35 YP_001530923.1 PFAM: initiation factor 3; KEGG: gme:Gmet_1412 initiation factor 3 YP_001530924.1 KEGG: dde:Dde_1513 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001530925.1 KEGG: sfu:Sfum_0550 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001530926.1 TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: sfu:Sfum_0549 putative transcriptional acitvator, Baf family YP_001530927.1 KEGG: ypk:y2426 hypothetical protein YP_001530929.1 PFAM: nitroreductase; KEGG: mtp:Mthe_1387 nitroreductase YP_001530931.1 KEGG: sat:SYN_00127 response regulator receiver domain YP_001530932.1 KEGG: sat:SYN_00126 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001530933.1 KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001530934.1 PFAM: protein of unknown function YGGT; KEGG: gur:Gura_1165 protein of unknown function YGGT YP_001530935.1 KEGG: ppd:Ppro_1933 hypothetical protein YP_001530936.1 KEGG: tcx:Tcr_0778 hypothetical protein YP_001530938.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase YP_001530939.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001530940.1 PFAM: L-seryl-tRNA selenium transferase; KEGG: gme:Gmet_0061 selenocysteine synthase YP_001530941.1 TIGRFAM: putative regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_3203 hypothetical protein YP_001530942.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: pth:PTH_0973 uroporphyrinogen-III methylase and uroporphyrinogen-III synthase YP_001530943.1 PFAM: CoA-binding domain protein; KEGG: sfu:Sfum_1966 CoA-binding domain protein YP_001530944.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: ava:Ava_2597 4'-phosphopantetheinyl transferase YP_001530945.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: dps:DP0362 probable cold-shock protein (CspB) YP_001530946.1 PFAM: NAD-dependent epimerase/dehydratase; cyclase/dehydrase; domain of unknown function DUF1731; KEGG: sru:SRU_0723 hypothetical protein YP_001530947.1 KEGG: dps:DP1254 hypothetical protein YP_001530948.1 KEGG: dde:Dde_0659 putative transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase YP_001530950.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: lsa:LSA0218 thioredoxin YP_001530951.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pho:PH1509 440aa long hypothetical NADH oxidase YP_001530952.1 KEGG: mtp:Mthe_0712 hypothetical protein YP_001530953.1 PFAM: (Uracil-5)-methyltransferase; KEGG: syf:Synpcc7942_0241 RNA methyltransferase, TrmA family YP_001530954.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit YP_001530955.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: abo:ABO_0690 TRAP dicarboxylate transporter, putative YP_001530956.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter YP_001530957.1 KEGG: abo:ABO_0687 hypothetical protein YP_001530958.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit YP_001530959.1 PFAM: lipid-binding START domain protein; KEGG: xac:XAC0537 hypothetical protein YP_001530960.1 KEGG: aci:ACIAD2564 hypothetical protein YP_001530961.1 PFAM: UspA domain protein; KEGG: pca:Pcar_2016 universal stress protein UspA-like protein YP_001530962.1 KEGG: rba:RB9448 hypothetical protein YP_001530963.1 PFAM: alpha/beta hydrolase fold; KEGG: pcr:Pcryo_0023 alpha/beta hydrolase fold YP_001530966.1 KEGG: rru:Rru_A0765 hypothetical protein YP_001530967.1 KEGG: gur:Gura_0765 hypothetical protein YP_001530968.1 KEGG: dps:DP0494 hypothetical protein YP_001530969.1 PFAM: BsuBIPstI restriction endonuclease domain protein; KEGG: sdy:SDY_1927 type II site-specific deoxyribonuclease YP_001530970.1 KEGG: sdy:SDY_1926 site-specific DNA-methyltransferase YP_001530971.1 PFAM: transposase IS4 family protein; KEGG: oan:Oant_4812 transposase IS4 family protein YP_001530972.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY3522 putative anaerobic dehydrogenase YP_001530973.1 KEGG: dsy:DSY1470 hypothetical protein YP_001530974.1 KEGG: dde:Dde_1896 lipoprotein, putative YP_001530975.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: gsu:GSU0797 putative multiple antibiotic resistance protein YP_001530976.1 KEGG: mta:Moth_2280 hypothetical protein YP_001530977.1 KEGG: mta:Moth_2281 adenine-specific DNA methylase containing a Zn-ribbon-like YP_001530980.1 PFAM: ferredoxin; KEGG: sfu:Sfum_0999 ferredoxin YP_001530981.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: afu:AF2273 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YP_001530982.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_2604 acyl-CoA dehydrogenase domain protein YP_001530983.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_2972 acyl-CoA dehydrogenase domain protein YP_001530984.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfu:Sfum_2672 TRAP dicarboxylate transporter-DctP subunit YP_001530985.1 KEGG: pap:PSPA7_3748 hypothetical protein YP_001530987.1 PFAM: Sterol-binding domain protein; KEGG: rrs:RoseRS_2973 hypothetical protein YP_001530988.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2447 transcriptional regulator, TetR family YP_001530989.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: mta:Moth_1558 shikimate 5-dehydrogenase YP_001530990.1 PFAM: shikimate kinase; KEGG: dde:Dde_2728 shikimate kinase YP_001530991.1 KEGG: rrs:RoseRS_3626 hypothetical protein YP_001530992.1 KEGG: rca:Rcas_0468 hypothetical protein YP_001530993.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rba:RB13330 probable O-linked GlcNAc transferase-putative TPR-containing transmembrane protein YP_001530994.1 PFAM: glycosyl transferase family 2; KEGG: azo:azo2380 glycosyltransferase YP_001530995.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28501 hypothetical protein YP_001530996.1 KEGG: rrs:RoseRS_0010 WD40 domain protein beta propeller YP_001530997.1 KEGG: rrs:RoseRS_0010 WD40 domain protein beta propeller YP_001530998.1 PFAM: glycosyl transferase family 2; KEGG: pth:PTH_1466 glycosyltransferases YP_001530999.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_1380 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001531001.1 KEGG: pca:Pcar_1601 hypothetical protein YP_001531002.1 KEGG: dra:DR_1171 hypothetical protein YP_001531003.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_0062 acyl-CoA dehydrogenase-like YP_001531004.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pha:PSHAa2481 enoyl-CoA hydratase YP_001531005.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein YP_001531006.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein YP_001531007.1 KEGG: afu:AF0267 A. fulgidus predicted coding region AF0267 YP_001531008.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gur:Gura_1785 apolipoprotein N-acyltransferase YP_001531010.1 PFAM: VWA containing CoxE family protein; KEGG: sat:SYN_00328 von Willebrand factor type A domain protein YP_001531011.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sat:SYN_00329 ATP-dependent protease subunit YP_001531012.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein YP_001531013.1 PFAM: von Willebrand factor type A; KEGG: mma:MM_2987 hypothetical protein YP_001531014.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: mma:MM_2988 nitric-oxide reductase YP_001531015.1 PFAM: PilT protein domain protein; KEGG: cbd:COXBU7E912_1321 PIN domain protein YP_001531017.1 KEGG: cbd:COXBU7E912_0818 putative GTP-binding protein YP_001531018.1 KEGG: cph:Cpha266_0653 hypothetical protein YP_001531019.1 PFAM: Domain of unknown function DUF1814; KEGG: cph:Cpha266_0654 hypothetical protein YP_001531020.1 KEGG: rsq:Rsph17025_4362 hypothetical protein YP_001531021.1 PFAM: N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: rsq:Rsph17025_4361 N-6 DNA methylase YP_001531023.1 KEGG: nca:Noca_2710 regulatory protein, MerR YP_001531027.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ctc:CTC01804 sensory transduction protein kinase YP_001531029.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_001531033.1 KEGG: sfu:Sfum_1111 phage integrase family protein YP_001531034.1 KEGG: tbd:Tbd_0465 hypothetical protein YP_001531035.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: abo:ABO_0690 TRAP dicarboxylate transporter, putative YP_001531036.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: abo:ABO_0689 TRAP C4-dicarboxylate transporter YP_001531037.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein) YP_001531038.1 PFAM: aconitate hydratase domain protein; KEGG: pca:Pcar_1905 3-isopropylmalate dehydratase, small subunit, putative YP_001531039.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001531040.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001531041.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1005 CoA enzyme activase YP_001531042.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: sfu:Sfum_4059 hydantoinase/oxoprolinase YP_001531043.1 PFAM: histone deacetylase superfamily; KEGG: sfu:Sfum_4058 histone deacetylase superfamily YP_001531044.1 PFAM: tRNA synthetase class II (D K and N); KEGG: gme:Gmet_1839 tRNA synthetase, class II (D, K and N) YP_001531045.1 PFAM: alpha/beta hydrolase fold; KEGG: syf:Synpcc7942_1801 hypothetical protein YP_001531046.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2120 transcriptional regulator, AbrB family YP_001531047.1 PFAM: PilT protein domain protein; KEGG: pla:Plav_2595 PilT protein domain protein YP_001531048.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0444 DctP (periplasmic C4-dicarboxylate binding protein) YP_001531049.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sme:SMa1717 putative integral membrane transporter YP_001531050.1 KEGG: sfu:Sfum_4047 cytochrome c, class III YP_001531051.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC YP_001531052.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001531053.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: har:HEAR2617 molybdenum cofactor biosynthesis protein C YP_001531054.1 KEGG: sat:SYN_01004 protein involved in biosynthesis of molybdopterin YP_001531055.1 KEGG: sat:SYN_00482 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001531056.1 PFAM: type IV pilus assembly PilZ YP_001531057.1 KEGG: aae:aq_1907 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001531058.1 PFAM: GCN5-related N-acetyltransferase; histone deacetylase superfamily; KEGG: tdn:Tmden_1813 histone deacetylase superfamily YP_001531059.1 PFAM: Dual specificity protein phosphatase; putative tyrosine phosphatase; KEGG: pca:Pcar_2841 hypothetical protein YP_001531060.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rca:Rcas_4297 TrkA-C domain protein YP_001531061.1 PFAM: TrkA-C domain protein; Chloride channel core; KEGG: dde:Dde_0310 CBS YP_001531062.1 PFAM: dihydropteroate synthase DHPS; KEGG: sfu:Sfum_2563 dihydropteroate synthase, DhpS YP_001531063.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001531064.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_001531065.1 KEGG: sfu:Sfum_2566 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_001531066.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001531067.1 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate YP_001531068.1 PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1913 hypothetical protein YP_001531069.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0861 putative methyltransferase YP_001531070.1 KEGG: sat:SYN_02173 alpha/beta hydrolase family protein YP_001531071.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: gsu:GSU0443 ribonuclease D, putative YP_001531073.1 PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: sat:SYN_02092 fog:GGDEF domain membrane protein YP_001531074.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001531075.1 PFAM: phosphoribosyltransferase; KEGG: dge:Dgeo_0504 uracil phosphoribosyltransferase YP_001531076.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: sth:STH1612 molybdopterin precursor biosynthesis protein YP_001531078.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_1359 AMP-dependent synthetase and ligase YP_001531081.1 PFAM: sugar isomerase (SIS); KEGG: sat:SYN_02923 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_001531082.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sat:SYN_00021 alcohol dehydrogenase, class IV YP_001531083.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase YP_001531084.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001531085.1 PFAM: PSP1 domain protein; KEGG: pth:PTH_0064 uncharacterized homolog of PSP1 YP_001531086.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit YP_001531087.1 PFAM: histone family protein DNA-binding protein; KEGG: pca:Pcar_1455 integration host factor, beta subunit YP_001531088.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: sat:SYN_01607 organic solvent tolerance protein YP_001531089.1 PFAM: protein of unknown function DUF195; KEGG: gur:Gura_0571 protein of unknown function DUF195 YP_001531090.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; KEGG: sfu:Sfum_0288 4-hydroxybenzoate polyprenyltransferase, putative YP_001531091.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mta:Moth_0094 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001531092.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: sfu:Sfum_0287 UbiD family decarboxylases YP_001531093.1 PFAM: type IV pilus assembly PilZ; KEGG: sat:SYN_00810 hypothetical cytosolic protein YP_001531094.1 PFAM: Sporulation domain protein; KEGG: sfu:Sfum_0560 sporulation domain protein YP_001531095.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001531097.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_001531098.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001531099.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mmr:Mmar10_0959 transferase hexapeptide repeat containing protein YP_001531100.1 KEGG: mgi:Mflv_1101 hypothetical protein YP_001531101.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001531102.1 PFAM: histidinol dehydrogenase; KEGG: sfu:Sfum_3299 histidinol dehydrogenase YP_001531103.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_1910 multi-sensor hybrid histidine kinase YP_001531104.1 PFAM: protein of unknown function DUF47; KEGG: mac:MA2934 hypothetical protein YP_001531105.1 PFAM: phosphate transporter; KEGG: dde:Dde_3781 sodium/phosphate symporter YP_001531106.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1391 ABC transporter related YP_001531107.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_3160 ABC transporter related YP_001531108.1 PFAM: Silent information regulator protein Sir2; KEGG: pho:PH0947 NAD-dependent deacetylase YP_001531110.1 PFAM: Polyprenyl synthetase; KEGG: sfu:Sfum_1586 trans-hexaprenyltranstransferase YP_001531111.1 KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001531112.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2183 enoyl-CoA hydratase/isomerase YP_001531113.1 PFAM: ApbE family lipoprotein; KEGG: vco:VC0395_A1878 thiamin biosynthesis lipoprotein ApbE YP_001531114.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rci:RCIX762 putative amidohydrolase YP_001531115.1 PFAM: beta-lactamase domain protein; KEGG: rxy:Rxyl_1229 beta-lactamase-like protein YP_001531116.1 TIGRFAM: siroheme synthase; KEGG: gur:Gura_0362 siroheme synthase YP_001531117.1 PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_3065 cytochrome c biogenesis protein YP_001531118.1 KEGG: gme:Gmet_3233 glutamyl-tRNA reductase:shikimate/quinate 5-dehydrogenase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_001531119.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: afw:Anae109_2258 two component, sigma54 specific, transcriptional regulator, fis family YP_001531120.1 KEGG: lic:LIC20238 S-adenosylmethionine decarboxylase like protein YP_001531122.1 PFAM: protein of unknown function DUF201; KEGG: ade:Adeh_2440 biotin carboxylase-like YP_001531123.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mbn:Mboo_2097 diaminopimelate decarboxylase YP_001531124.1 KEGG: dps:DP0970 hypothetical protein YP_001531125.1 KEGG: pca:Pcar_0820 hypothetical protein YP_001531126.1 PFAM: SirA family protein; KEGG: pca:Pcar_0821 hypothetical protein YP_001531127.1 KEGG: sfu:Sfum_3170 hypothetical protein YP_001531128.1 PFAM: protein of unknown function UPF0031; KEGG: sfu:Sfum_3171 sugar kinase YP_001531129.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein; KEGG: ppd:Ppro_1707 selenide, water dikinase YP_001531130.1 PFAM: transposase IS4 family protein; KEGG: sme:SMc03260 putative transposase for insertion sequence ISRM17 YP_001531131.1 TIGRFAM: conserved repeat domain; KEGG: sal:Sala_1325 protein of unknown function DUF11 YP_001531132.1 TIGRFAM: conserved repeat domain; KEGG: sal:Sala_1326 hypothetical protein YP_001531133.1 TIGRFAM: conserved repeat domain; KEGG: sal:Sala_1327 protein of unknown function DUF11 YP_001531134.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; OmpA/MotB domain protein; KEGG: sal:Sala_1328 protein of unknown function DUF11 YP_001531135.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: dge:Dgeo_0312 protein of unknown function DUF11 YP_001531136.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; KEGG: sfu:Sfum_2639 multi-sensor hybrid histidine kinase YP_001531137.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: gme:Gmet_3476 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase YP_001531138.1 KEGG: rfr:Rfer_1978 PAS/PAC sensor signal transduction histidine kinase YP_001531141.1 KEGG: cfa:482252 podocalyxin-like YP_001531142.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU0841 sigma-54 dependent DNA-binding response regulator YP_001531143.1 KEGG: aba:Acid345_3014 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001531144.1 KEGG: ppd:Ppro_1910 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001531145.1 KEGG: ppd:Ppro_1910 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001531146.1 KEGG: gur:Gura_2115 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001531147.1 KEGG: rfr:Rfer_2480 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001531148.1 KEGG: gsu:GSU2401 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001531149.1 KEGG: rca:Rcas_0398 hypothetical protein YP_001531150.1 KEGG: gme:Gmet_2788 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3 YP_001531151.1 PFAM: response regulator receiver; KEGG: gme:Gmet_2789 response regulator receiver domain protein (CheY-like) YP_001531152.1 KEGG: ppd:Ppro_1910 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein