-- dump date 20240506_001639 -- class Genbank::Contig -- table contig_comment -- id comment NC_013223.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001734.1.REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in SenegalREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal AfricaREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: SenegalREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35CREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducerREFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001734.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## COMPLETENESS: full length. NC_013224.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001735.1.REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in SenegalREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal AfricaREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: SenegalREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35CREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducerREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001735.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082992 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Desulfohalobium retbaense DSM 5692 Culture Collection ID :: DSM 5692 GOLD Stamp ID :: Gi02246 Greengenes ID :: 10400 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: Saline sediment from Retba Lake in Senegal Africa Isolation Country :: Senegal Latitude :: 14.833333 Longitude :: -17.233333 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 35C Salinity :: Halophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Phenotypes :: Sulfate reducer ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024325.1-RS_2024_04_21 Annotation Date :: 04/21/2024 00:48:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,547 CDSs (total) :: 2,487 Genes (coding) :: 2,472 CDSs (with protein) :: 2,472 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 3 of 15 Pseudo Genes (incomplete) :: 13 of 15 Pseudo Genes (internal stop) :: 4 of 15 Pseudo Genes (multiple problems) :: 3 of 15 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.