-- dump date   	20140619_063055
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003196881.1	KEGG: dma:DMR_00120 hypothetical protein
YP_003196882.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase
YP_003196883.1	KEGG: dma:DMR_00140 hypothetical protein
YP_003196884.1	KEGG: dvu:DVU3360 ParB family protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_003196885.1	TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7- phosphate 1-kinase
YP_003196886.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_003196887.1	KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003196888.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX
YP_003196889.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_003196890.1	PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: dvl:Dvul_0026 methyltransferase type 11
YP_003196891.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase
YP_003196892.1	PFAM: Fe-S cluster domain protein; KEGG: dvl:Dvul_2363 molybdopterin-guanine dinucleotide biosynthesis MobB region
YP_003196893.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_003196894.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_003196895.1	KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_003196896.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase
YP_003196897.1	PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein
YP_003196898.1	PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: dma:DMR_00320 rRNA (cytosine-C(5)-)- methyltransferase
YP_003196899.1	TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; KEGG: dvm:DvMF_2143 dihydroorotate dehydrogenase family protein
YP_003196900.1	PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvm:DvMF_2142 dihydroorotate oxidase B, electron transfer subunit
YP_003196901.1	PFAM: SMC domain protein; KEGG: dvm:DvMF_0923 SMC domain protein
YP_003196902.1	KEGG: dol:Dole_1611 hypothetical protein
YP_003196903.1	PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein
YP_003196904.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvm:DvMF_1427 metal dependent phosphohydrolase
YP_003196905.1	PFAM: periplasmic solute binding protein; KEGG: dvl:Dvul_1725 periplasmic solute binding protein
YP_003196906.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase
YP_003196907.1	PFAM: ABC-3 protein; KEGG: dvm:DvMF_0117 ABC-3 protein
YP_003196908.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_2744 TonB-dependent receptor
YP_003196909.1	PFAM: periplasmic binding protein; KEGG: dol:Dole_2060 periplasmic binding protein
YP_003196911.1	PFAM: transport system permease protein; KEGG: dol:Dole_2061 transport system permease protein
YP_003196912.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_2062 ABC transporter-related protein
YP_003196913.1	PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_34570 NarK
YP_003196914.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: geo:Geob_1218 alpha amylase catalytic region
YP_003196915.1	KEGG: gbm:Gbem_0136 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase- fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_003196916.1	KEGG: sfu:Sfum_3451 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_003196917.1	KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain
YP_003196918.1	PFAM: glycoside hydrolase family 57; KEGG: sfu:Sfum_2350 glycoside hydrolase, family 57
YP_003196919.1	KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain
YP_003196921.1	KEGG: pca:Pcar_0554 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77
YP_003196922.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP1333 long-chain-fatty-acid--CoA ligase
YP_003196923.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase
YP_003196924.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_003196925.1	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35
YP_003196926.1	TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: dvl:Dvul_0710 50S ribosomal protein L20
YP_003196927.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_003196928.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_003196929.1	KEGG: dvl:Dvul_1822 hypothetical protein
YP_003196930.1	PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein
YP_003196931.1	PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dma:DMR_10720 MerR family transcriptional regulator
YP_003196932.1	KEGG: dvm:DvMF_0531 hypothetical protein
YP_003196933.1	KEGG: dvl:Dvul_0331 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_003196934.1	KEGG: dde:Dde_0097 hypothetical protein
YP_003196935.1	PFAM: sulphate transporter; KEGG: dat:HRM2_13280 SulP1
YP_003196936.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein
YP_003196937.1	KEGG: rpb:RPB_2521 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein
YP_003196938.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pca:Pcar_1342 putative acetoin utilization protein AcuB
YP_003196939.1	PFAM: Extracellular ligand-binding receptor; KEGG: sat:SYN_00659 methyl-accepting chemotaxis protein
YP_003196940.1	PFAM: beta-lactamase domain protein; KEGG: dal:Dalk_1100 metal-dependent hydrolase
YP_003196941.1	PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dat:HRM2_46820 rhodanese-like domain protein
YP_003196944.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein
YP_003196945.1	TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase
YP_003196946.1	PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: dvm:DvMF_1981 ferritin Dps family protein
YP_003196948.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_003196949.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein
YP_003196950.1	PFAM: cysteine-rich small domain; KEGG: dma:DMR_05450 hypothetical protein
YP_003196951.1	KEGG: dps:DP0488 DctQ (C4-dicarboxylate permease, small subunit)
YP_003196952.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dps:DP0487 DctM (C4-dicarboxylate permease, large subunit)
YP_003196953.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dps:DP0483 DctP (periplasmic C4-dicarboxylate binding protein)
YP_003196954.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dps:DP0482 sigma54-dependent transcriptional regulator
YP_003196955.1	PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase
YP_003196956.1	PFAM: DEAD/DEAH box helicase domain protein; Protein of unknown function DUF1998; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dma:DMR_45970 putative helicase
YP_003196957.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_45950 response regulator
YP_003196958.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvm:DvMF_2201 integral membrane sensor signal transduction histidine kinase
YP_003196959.1	PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_2204 aminotransferase class I and II
YP_003196960.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2277 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003196961.1	KEGG: dvl:Dvul_2276 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase
YP_003196962.1	KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein
YP_003196963.1	KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein
YP_003196964.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_003196965.1	PFAM: alanine racemase domain protein; KEGG: dma:DMR_46160 hypothetical protein
YP_003196966.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3
YP_003196967.1	PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM
YP_003196968.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: dvu:DVU0115 shikimate 5-dehydrogenase
YP_003196969.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
YP_003196970.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative
YP_003196971.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_003196972.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit
YP_003196973.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_003196974.1	KEGG: dal:Dalk_3658 hypothetical protein
YP_003196975.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dat:HRM2_09100 putative methyl-accepting chemotaxis protein
YP_003196976.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2454 histidine kinase
YP_003196977.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: scl:sce5791 sigma-54 dependent DNA-binding response regulator
YP_003196978.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase
YP_003196979.1	PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase
YP_003196980.1	TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS
YP_003196981.1	TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dma:DMR_17100 nitrogen fixation protein NifU
YP_003196982.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_4375 protein of unknown function DUF6 transmembrane
YP_003196983.1	PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291
YP_003196984.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation
YP_003196985.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gur:Gura_1130 MarR family transcriptional regulator
YP_003196986.1	PFAM: regulatory protein MerR; KEGG: dde:Dde_0126 MerR family transcriptional regulator
YP_003196987.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tgr:Tgr7_1569 RND family efflux transporter MFP subunit
YP_003196988.1	PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 AcrB/AcrD/AcrF family cation efflux protein
YP_003196989.1	PFAM: NADPH-dependent FMN reductase; KEGG: sat:SYN_02920 NADPH-dependent FMN reductase
YP_003196990.1	PFAM: AsmA family protein; KEGG: dal:Dalk_3707 AsmA family protein
YP_003196991.1	PFAM: alpha/beta hydrolase fold; KEGG: sfu:Sfum_3016 3-oxoadipate enol-lactonase
YP_003196992.1	PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_3493 nitrogen regulatory protein P-II
YP_003196993.1	TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dde:Dde_3492 ammonium transporter
YP_003196994.1	catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate
YP_003196995.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate
YP_003196996.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvm:DvMF_1749 prephenate dehydratase
YP_003196997.1	KEGG: dma:DMR_05340 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase)
YP_003196998.1	PFAM: Prephenate dehydrogenase; KEGG: dvm:DvMF_1747 prephenate dehydrogenase
YP_003196999.1	PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: dma:DMR_05320 anthranilate synthase component I
YP_003197000.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dma:DMR_05310 anthranilate synthase component II
YP_003197001.1	KEGG: dvu:DVU0467 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like
YP_003197002.1	PFAM: Indole-3-glycerol phosphate synthase; KEGG: dvl:Dvul_2469 indole-3-glycerol-phosphate synthase
YP_003197003.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dds:Ddes_1589 phosphoribosylanthranilate isomerase
YP_003197004.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_003197005.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_003197006.1	PFAM: sulfotransferase; KEGG: CG9550 gene product from transcript CG9550-RA
YP_003197007.1	PFAM: protein of unknown function DUF218; KEGG: spq:SPAB_02523 hypothetical protein
YP_003197008.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pag:PLES_57731 putative glycine betaine/L- proline ABC transporter, periplasmic component
YP_003197009.1	TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_B5835 aldehyde dehydrogenase (acceptor)
YP_003197010.1	TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dal:Dalk_0705 choline dehydrogenase
YP_003197011.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce5381 MarR family transcriptional regulator
YP_003197012.1	KEGG: ade:Adeh_1817 hypothetical protein
YP_003197013.1	PFAM: protein of unknown function DUF482; KEGG: dma:DMR_08250 hypothetical protein
YP_003197014.1	PFAM: PHP domain protein; KEGG: dal:Dalk_5110 PHP domain protein
YP_003197015.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: dma:DMR_28310 cytochrome d ubiquinol oxidase subunit II
YP_003197016.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I
YP_003197017.1	KEGG: dde:Dde_0372 hypothetical protein
YP_003197018.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase
YP_003197019.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein
YP_003197020.1	TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dma:DMR_17610 desulfoferrodoxin
YP_003197021.1	PFAM: ferric-uptake regulator; KEGG: dps:DP2867 ferric uptake regulatory protein
YP_003197022.1	KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin
YP_003197023.1	TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase
YP_003197024.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_003197025.1	PFAM: MscS Mechanosensitive ion channel; KEGG: dvm:DvMF_2529 MscS mechanosensitive ion channel
YP_003197026.1	KEGG: dvl:Dvul_0234 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003197027.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_003197028.1	TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dvm:DvMF_1703 signal peptide peptidase SppA, 36K type
YP_003197029.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_08720 hypothetical protein
YP_003197032.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase)
YP_003197033.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dma:DMR_39140 glucose 1-phosphate thymidylyltransferase
YP_003197034.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_2933 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_003197035.1	KEGG: tmz:Tmz1t_2118 hypothetical protein
YP_003197036.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvm:DvMF_1205 GntR domain protein
YP_003197037.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dat:HRM2_12470 LldD
YP_003197038.1	PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0529 hypothetical protein
YP_003197039.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1731 hypothetical protein
YP_003197040.1	PFAM: anaerobic cobalt chelatase; KEGG: dvl:Dvul_1703 anaerobic cobalt chelatase
YP_003197041.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1193 ATPase
YP_003197042.1	TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter, inner membrane subunit CbiQ
YP_003197043.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase
YP_003197044.1	PFAM: Twin-arginine translocation pathway, signal sequence; KEGG: dma:DMR_38630 iron-sulfur binding protein
YP_003197045.1	KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein
YP_003197046.1	PFAM: cytochrome B561; KEGG: dvl:Dvul_0241 cytochrome b561
YP_003197047.1	KEGG: dvl:Dvul_0242 cytochrome c family protein; Contains selenocysteine
YP_003197048.1	KEGG: dvm:DvMF_1692 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain containing protein
YP_003197049.1	KEGG: dps:DP1865 ferredoxin
YP_003197050.1	KEGG: dma:DMR_25670 hypothetical protein
YP_003197051.1	PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD)
YP_003197052.1	PFAM: Peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase
YP_003197053.1	PFAM: thiamineS protein; KEGG: dma:DMR_26290 hypothetical protein
YP_003197054.1	KEGG: gur:Gura_3547 hypothetical protein
YP_003197055.1	KEGG: gur:Gura_3550 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase
YP_003197056.1	PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase
YP_003197058.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_3488 ABC transporter permease
YP_003197059.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psa:PST_2259 peptide ABC transporter, permease protein
YP_003197060.1	PFAM: extracellular solute-binding protein family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein
YP_003197061.1	PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; von Willebrand factor type A; KEGG: sat:SYN_00198 outer membrane porin protein
YP_003197062.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins
YP_003197063.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein
YP_003197064.1	PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: acp:A2cp1_0659 PAS/PAC sensor signal transduction histidine kinase
YP_003197065.1	PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06688 spermidine/putrescine-binding periplasmic protein
YP_003197066.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gme:Gmet_2426 Hpt sensor hybrid histidine kinase
YP_003197067.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pca:Pcar_2050 hypothetical protein
YP_003197068.1	KEGG: dvl:Dvul_1412 hypothetical protein
YP_003197069.1	PFAM: Peptidase S24, S26A and S26B, conserved region; CI repressor; KEGG: dma:DMR_33970 hypothetical protein
YP_003197070.1	PFAM: Patatin; KEGG: pna:Pnap_4178 patatin
YP_003197071.1	PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein
YP_003197072.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase
YP_003197073.1	KEGG: dma:DMR_01950 iron-sulfur binding protein
YP_003197074.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit
YP_003197075.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative
YP_003197076.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A
YP_003197077.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C
YP_003197078.1	KEGG: dma:DMR_01900 heterodisulfide reductase subunit C
YP_003197079.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron- containing
YP_003197080.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_02400 NtrC family two-component response regulator
YP_003197081.1	PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3535 histidine kinase
YP_003197082.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron- containing
YP_003197083.1	PFAM: Hpt domain protein; KEGG: sat:SYN_00227 putative cytoplasmic protein
YP_003197084.1	PFAM: Phosphoglycerate mutase; 6-phosphofructo-2- kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase
YP_003197085.1	PFAM: acriflavin resistance protein; KEGG: dal:Dalk_2343 acriflavin resistance protein
YP_003197086.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dal:Dalk_2344 efflux transporter, RND family, MFP subunit
YP_003197087.1	PFAM: outer membrane efflux protein; KEGG: dal:Dalk_2345 outer membrane efflux protein
YP_003197088.1	PFAM: protein of unknown function DUF52; KEGG: dma:DMR_31670 hypothetical protein
YP_003197089.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_003197090.1	PFAM: NikR nickel binding; CopG domain protein DNA- binding domain protein; KEGG: dvl:Dvul_0474 nickel responsive regulator
YP_003197091.1	PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dma:DMR_31760 hypothetical protein
YP_003197092.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1510 ATPase
YP_003197093.1	PFAM: phosphoribosyltransferase; KEGG: dde:Dde_1506 xanthine-guanine phosphoribosyltransferase
YP_003197094.1	PFAM: inner-membrane translocator; KEGG: dvm:DvMF_3028 inner-membrane translocator
YP_003197095.1	PFAM: inner-membrane translocator; KEGG: dps:DP0678 sugar ABC transporter, permease protein
YP_003197096.1	PFAM: basic membrane lipoprotein; KEGG: dvl:Dvul_1927 basic membrane lipoprotein
YP_003197097.1	PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein
YP_003197098.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_003197099.1	KEGG: dvu:DVU1801 hypothetical protein
YP_003197100.1	KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase
YP_003197101.1	KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase
YP_003197102.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase
YP_003197103.1	PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein
YP_003197104.1	KEGG: dps:DP0721 hypothetical protein
YP_003197105.1	KEGG: dvm:DvMF_1218 hypothetical protein
YP_003197106.1	Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence; KEGG: dvm:DvMF_1217 formate dehydrogenase, alpha subunit
YP_003197107.1	KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative
YP_003197108.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dvl:Dvul_2728 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_003197109.1	KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_003197111.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_38710 response regulator receiver protein
YP_003197112.1	PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; KEGG: gur:Gura_0393 glutamate synthase (ferredoxin)
YP_003197113.1	PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0946 peptidase M48 Ste24p
YP_003197114.1	KEGG: sfu:Sfum_1145 hypothetical protein
YP_003197115.1	PFAM: Nitrate reductase gamma subunit; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit
YP_003197116.1	KEGG: sfu:Sfum_1147 4Fe-4S ferredoxin, iron-sulfur binding
YP_003197117.1	KEGG: dde:Dde_2273 cytochrome c family protein
YP_003197118.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003197119.1	PFAM: Polysulphide reductase NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit, putative
YP_003197120.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2120 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003197121.1	KEGG: dma:DMR_39580 hypothetical protein
YP_003197122.1	KEGG: dde:Dde_3773 hypothetical protein
YP_003197123.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_39600 hypothetical protein
YP_003197124.1	KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region
YP_003197125.1	KEGG: dol:Dole_2670 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein
YP_003197126.1	PFAM: Dissimilatory sulfite reductase D; KEGG: dol:Dole_2671 dissimilatory sulfite reductase D
YP_003197127.1	TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_03630 putative Dsr related protein
YP_003197128.1	KEGG: dal:Dalk_2382 hypothetical protein
YP_003197129.1	KEGG: dde:Dde_3467 hypothetical protein
YP_003197130.1	KEGG: dvm:DvMF_2764 hypothetical protein
YP_003197131.1	TIGRFAM: valyl-tRNA synthetase; KEGG: dde:Dde_2839 valyl-tRNA synthetase
YP_003197132.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C- methyltransferase
YP_003197133.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: dma:DMR_44060 phosphoribosylglycinamide formyltransferase
YP_003197134.1	KEGG: dma:DMR_16970 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding
YP_003197135.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvl:Dvul_0752 phosphoribosylanthranilate isomerase
YP_003197136.1	PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: tdn:Suden_1179 tellurite resistance protein TehB
YP_003197137.1	KEGG: dma:DMR_03400 hypothetical protein
YP_003197138.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1
YP_003197139.1	PFAM: protein of unknown function UPF0118; KEGG: dol:Dole_2006 hypothetical protein
YP_003197140.1	PFAM: Carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
YP_003197141.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: dat:HRM2_32730 FsxA
YP_003197143.1	PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase
YP_003197144.1	KEGG: dma:DMR_33050 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein; HAD- superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3
YP_003197145.1	KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_003197146.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1
YP_003197147.1	TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvl:Dvul_1244 hydrogenase expression/formation protein
YP_003197148.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dds:Ddes_0384 hydrogenase assembly chaperone HypC/HupF
YP_003197149.1	KEGG: dma:DMR_18000 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein
YP_003197150.1	KEGG: dde:Dde_2932 hypothetical protein
YP_003197151.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
YP_003197152.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003197153.1	KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative
YP_003197154.1	KEGG: bja:bll7773 hypothetical protein
YP_003197155.1	KEGG: hha:Hhal_1487 hypothetical protein
YP_003197156.1	PFAM: peptidase M29 aminopeptidase II; KEGG: dol:Dole_2013 peptidase M29 aminopeptidase II
YP_003197157.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_31000 hypothetical membrane protein
YP_003197158.1	KEGG: dvu:DVU0579 molybdopterin-guanine dinucleotide biosynthesis protein A, putative
YP_003197159.1	PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative
YP_003197160.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA2125 aminotransferase
YP_003197162.1	PFAM: glycosyl transferase family 9; KEGG: dvu:DVU0998 heptosyltransferase family protein
YP_003197163.1	PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_0789 non-specific serine/threonine protein kinase
YP_003197164.1	KEGG: mca:MCA0837 hypothetical protein
YP_003197165.1	PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dvl:Dvul_1810 hypothetical protein
YP_003197166.1	KEGG: smd:Smed_4582 sulfotransferase
YP_003197167.1	PFAM: O-antigen polymerase; KEGG: dat:HRM2_25350 hypothetical protein
YP_003197168.1	PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2965 glycosyl transferase group 1
YP_003197169.1	KEGG: dde:Dde_1960 lipid A export ATP- binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_003197170.1	PFAM: polysaccharide deacetylase; KEGG: smt:Smal_2837 polysaccharide deacetylase
YP_003197171.1	PFAM: glycosyl transferase group 1; KEGG: dvu:DVU2635 glycosyl transferase, group 1 family protein
YP_003197172.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ
YP_003197173.1	KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase
YP_003197174.1	KEGG: dvl:Dvul_2084 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region
YP_003197175.1	PFAM: protein of unknown function DUF370; KEGG: dvm:DvMF_1139 hypothetical protein
YP_003197176.1	PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dvl:Dvul_2086 hypothetical protein
YP_003197177.1	KEGG: dma:DMR_32830 hypothetical protein
YP_003197178.1	KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_003197179.1	TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA methyl transferase-like; KEGG: dma:DMR_17320 putative tRNA uridine- sulfurtransferase
YP_003197180.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003197181.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dma:DMR_17350 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
YP_003197182.1	KEGG: dvl:Dvul_2167 hypothetical protein
YP_003197183.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_003197184.1	PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE
YP_003197185.1	TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA
YP_003197186.1	KEGG: dvl:Dvul_1705 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase
YP_003197187.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_1704 dTDP-glucose 4,6-dehydratase
YP_003197188.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_2409 K+-dependent Na+/Ca+ exchanger related-protein
YP_003197189.1	KEGG: dma:DMR_43250 hypothetical protein
YP_003197190.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_003197191.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003197192.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_1251 ferredoxin-NADP(+) reductase subunit alpha
YP_003197193.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_003197194.1	PFAM: PSP1 domain protein; KEGG: dma:DMR_08030 hypothetical protein
YP_003197195.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_003197196.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Miro domain protein; Ferrous iron transport B domain protein; KEGG: dvm:DvMF_1015 ferrous iron transport protein B
YP_003197197.1	PFAM: FeoA family protein; KEGG: dma:DMR_19560 ferrous iron transport protein A
YP_003197199.1	PFAM: FeoA family protein; KEGG: dma:DMR_19550 putative ferrous iron transport protein
YP_003197200.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; RimK domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dma:DMR_22160 carbamoyl-phosphate synthase large chain
YP_003197201.1	TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dma:DMR_22150 amidophosphoribosyltransferase
YP_003197202.1	KEGG: dvm:DvMF_2308 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein
YP_003197203.1	KEGG: dde:Dde_3122 dolichyl-phosphate-mannose- protein mannosyltransferase family protein
YP_003197204.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dde:Dde_3124 penicillin-binding protein 1A
YP_003197205.1	PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein
YP_003197206.1	PFAM: macrophage migration inhibitory factor family protein; KEGG: mca:MCA2795 phenylpyruvate tautomerase, putative
YP_003197207.1	PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32
YP_003197208.1	PFAM: thioesterase superfamily protein; KEGG: sfu:Sfum_3091 uncharacterized domain 1
YP_003197209.1	catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge
YP_003197210.1	KEGG: cvi:CV_0964 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_003197211.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_003197212.1	PFAM: protein of unknown function DUF101; KEGG: mca:MCA0196 hypothetical protein
YP_003197213.1	PFAM: protein of unknown function UPF0027; KEGG: tgr:Tgr7_1950 protein of unknown function UPF0027
YP_003197214.1	KEGG: bba:Bd3498 hypothetical protein
YP_003197215.1	KEGG: dvm:DvMF_2059 hypothetical protein
YP_003197216.1	PFAM: Entericidin EcnAB
YP_003197217.1	KEGG: tgr:Tgr7_1149 hypothetical protein
YP_003197218.1	PFAM: protein of unknown function DUF364; KEGG: sfu:Sfum_0019 conserved hypothetical cytosolic protein
YP_003197219.1	PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dma:DMR_28800 GAF domain protein
YP_003197220.1	KEGG: dvm:DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_003197221.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197222.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer
YP_003197223.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0145 putative glycine betaine/L- proline ABC transporter, solute-binding protein
YP_003197224.1	PFAM: protein of unknown function DUF849; KEGG: bxe:Bxe_B0827 hypothetical protein
YP_003197225.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: csa:Csal_3173 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_003197226.1	KEGG: ppg:PputGB1_0325 hypothetical protein
YP_003197227.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain; KEGG: pap:PSPA7_6176 putative transcriptional regulator
YP_003197228.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: csa:Csal_0039 protein of unknown function DUF6, transmembrane
YP_003197229.1	PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_3104 MscS mechanosensitive ion channel
YP_003197230.1	PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: dol:Dole_0585 methyltransferase type 11
YP_003197231.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2886 substrate-binding region of ABC- type glycine betaine transport system
YP_003197232.1	PFAM: Radical SAM domain protein; KEGG: dat:HRM2_30680 hypothetical protein
YP_003197234.1	PFAM: peptidase M24; KEGG: csa:Csal_2884 peptidase M24
YP_003197235.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_2672 LysR family transcriptional regulator
YP_003197236.1	PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sun:SUN_0722 transcription accessory protein
YP_003197237.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_03766 hypothetical protein
YP_003197238.1	PFAM: regulatory protein MarR; KEGG: afr:AFE_0075 hypothetical protein
YP_003197240.1	KEGG: psa:PST_1470 death-on-curing family protein
YP_003197241.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: dol:Dole_2032 3'(2'),5'-bisphosphate nucleotidase
YP_003197243.1	KEGG: eba:p1B35 hypothetical protein
YP_003197244.1	PFAM: Protein of unknown function DUF2283; KEGG: pna:Pnap_1349 hypothetical protein
YP_003197247.1	KEGG: dal:Dalk_1490 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II
YP_003197249.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dma:DMR_38190 NAD-dependent epimerase/dehydratase family protein
YP_003197250.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003197251.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003197252.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197253.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003197254.1	KEGG: ppr:PBPRA2370 putative transposase
YP_003197255.1	PFAM: Integrase catalytic region; KEGG: ppr:PBPRB1457 transposase
YP_003197256.1	PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3776 glycosyl transferase, group 1
YP_003197257.1	KEGG: gbm:Gbem_1617 hypothetical protein
YP_003197258.1	KEGG: sse:Ssed_1264 SecC motif-containing protein
YP_003197259.1	PFAM: glycosyl transferase group 1; KEGG: pub:SAR11_0550 glycosyl transferase family protein
YP_003197260.1	KEGG: sme:SM_b21237 sulfotransferase domain- containing protein
YP_003197261.1	PFAM: polysaccharide biosynthesis protein; KEGG: sme:SM_b20950 putative transport protein, Wzx
YP_003197262.1	KEGG: abu:Abu_0686 hypothetical protein
YP_003197263.1	PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2133 glycosyl transferase group 1
YP_003197264.1	KEGG: scl:sce7845 hypothetical protein
YP_003197265.1	KEGG: vha:VIBHAR_00696 hypothetical protein
YP_003197266.1	PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Alcohol dehydrogenase zinc- binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase
YP_003197268.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tau:Tola_2854 transcriptional regulator, XRE family
YP_003197269.1	KEGG: aeh:Mlg_2308 hypothetical protein
YP_003197270.1	PFAM: Heparinase II/III family protein; KEGG: dal:Dalk_1335 heparinase II/III family protein
YP_003197271.1	PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_1334 glycosyl transferase group 1
YP_003197272.1	KEGG: dal:Dalk_1333 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase
YP_003197273.1	PFAM: protein of unknown function DUF1568; KEGG: vei:Veis_2394 hypothetical protein
YP_003197274.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003197275.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_2078 GCN5-related N- acetyltransferase
YP_003197276.1	PFAM: Protein of unknown function DUF1778; KEGG: hch:HCH_05628 hypothetical protein
YP_003197277.1	PFAM: Glycosyl transferase, family 4, conserved region; KEGG: dma:DMR_04940 putative glycosyltransferase
YP_003197278.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: sat:SYN_02385 glutamate synthase [NADPH] small chain
YP_003197279.1	PFAM: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease
YP_003197280.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3948 MATE efflux family protein
YP_003197281.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: HNH endonuclease domain-containing protein
YP_003197283.1	KEGG: dvm:DvMF_1219 transposase, putative
YP_003197284.1	KEGG: dvl:Dvul_2370 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; MEKHLA domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein
YP_003197285.1	PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein
YP_003197286.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_003197287.1	PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2110 glycosyl transferase family protein
YP_003197288.1	PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3
YP_003197289.1	Contains selenocysteine; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvl:Dvul_0771 oxidoreductase, selenocysteine- containing
YP_003197290.1	PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein
YP_003197291.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dat:HRM2_22770 HdrD2'
YP_003197292.1	KEGG: sfu:Sfum_0820 putative heterodisulfide reductase, C subunit
YP_003197293.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; response regulator receiver; KEGG: sfu:Sfum_0821 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003197294.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0822 formate dehydrogenase
YP_003197295.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_0823 methyl-viologen-reducing hydrogenase, delta subunit
YP_003197296.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1209 heterodisulfide reductase, A subunit
YP_003197297.1	PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit
YP_003197298.1	KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_003197299.1	PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0736 putative two component, sigma54 specific, transcriptional regulator, Fis family
YP_003197300.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator
YP_003197301.1	KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_003197302.1	PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_3111 trehalose phosphorylase/synthase
YP_003197304.1	PFAM: protein of unknown function DUF77; KEGG: dvl:Dvul_1840 hypothetical protein
YP_003197305.1	PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_32890 putative permease of the major facilitator superfamily
YP_003197306.1	KEGG: dvl:Dvul_0805 hypothetical protein
YP_003197307.1	PFAM: protein of unknown function DUF490; KEGG: dma:DMR_35520 hypothetical protein
YP_003197308.1	PFAM: surface antigen (D15); KEGG: dma:DMR_35510 hypothetical protein
YP_003197309.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dvm:DvMF_1013 peptidylprolyl isomerase FKBP- type
YP_003197310.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_43230 haloacid dehalogenase-like hydrolase family protein
YP_003197311.1	KEGG: dvm:DvMF_3059 hypothetical protein
YP_003197312.1	KEGG: ppd:Ppro_2997 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_003197313.1	PFAM: Asparaginase/glutaminase; KEGG: ank:AnaeK_1739 asparaginase
YP_003197314.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvu:DVU0477 isocitrate dehydrogenase, NADP- dependent
YP_003197315.1	PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron- molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3202 hypothetical protein
YP_003197316.1	PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3201 iron-sulfur cluster- binding/ATPase domain-containing protein
YP_003197317.1	PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1127 cobyrinic acid a,c-diamide synthase
YP_003197319.1	KEGG: dal:Dalk_2261 putative cytoplasmic protein
YP_003197320.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3198 hypothetical protein
YP_003197321.1	KEGG: dde:Dde_3197 hypothetical protein
YP_003197322.1	KEGG: dde:Dde_3196 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein
YP_003197323.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvm:DvMF_3165 hydrogenase accessory protein HypB
YP_003197324.1	PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative
YP_003197325.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvm:DvMF_0834 tRNA/rRNA methyltransferase (SpoU)
YP_003197326.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_003197327.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_003197328.1	KEGG: glo:Glov_1763 hypothetical protein
YP_003197329.1	KEGG: dma:DMR_35740 cytochrome c family protein
YP_003197330.1	KEGG: dma:DMR_18120 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003197331.1	PFAM: protein of unknown function DUF208; KEGG: dvm:DvMF_2375 protein of unknown function DUF208
YP_003197332.1	KEGG: dma:DMR_17030 ribonuclease E and G family protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein
YP_003197333.1	PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein
YP_003197334.1	PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dma:DMR_17010 putative methyltransferase
YP_003197335.1	KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative
YP_003197336.1	PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_0541 PDZ/DHR/GLGF
YP_003197337.1	PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein
YP_003197338.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dma:DMR_35690 putative RNA methyltransferase
YP_003197339.1	KEGG: csa:Csal_1476 periplasmic phosphate binding protein
YP_003197340.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2566 phosphate ABC transporter, inner membrane subunit PstC
YP_003197341.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1478 phosphate transport system permease protein 2
YP_003197342.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family
YP_003197343.1	KEGG: sfu:Sfum_2891 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_003197344.1	KEGG: dvl:Dvul_1910 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase
YP_003197345.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sfu:Sfum_0700 phosphate uptake regulator, PhoU
YP_003197346.1	KEGG: sat:SYN_01534 Mg/Co/Ni transporter; TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE intracellular region; MgtE integral membrane region; SMART: CBS domain containing protein
YP_003197348.1	KEGG: dma:DMR_33410 hypothetical protein
YP_003197349.1	KEGG: ppd:Ppro_2838 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase
YP_003197350.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease
YP_003197351.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0989 amino acid permease, ATP-binding protein
YP_003197352.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_3070 extracellular solute-binding protein
YP_003197353.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2684 binding-protein-dependent transport systems inner membrane component
YP_003197354.1	PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain protein
YP_003197355.1	PFAM: protein of unknown function DUF711; KEGG: dde:Dde_3704 hypothetical protein
YP_003197356.1	PFAM: heat shock protein Hsp20; KEGG: dma:DMR_15920 heat shock protein HSP20 family protein
YP_003197357.1	PFAM: amidohydrolase; KEGG: sfu:Sfum_2961 amidohydrolase
YP_003197358.1	PFAM: dihydrouridine synthase DuS; KEGG: dat:HRM2_10910 dihydrouridine synthase family protein
YP_003197359.1	PFAM: ribonuclease H; KEGG: dvl:Dvul_2274 ribonuclease H
YP_003197360.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dma:DMR_27100 phosphohexose mutase
YP_003197361.1	KEGG: dde:Dde_2946 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein
YP_003197362.1	KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein
YP_003197363.1	KEGG: dvm:DvMF_0138 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_003197364.1	KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; KH type 2 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; SMART: KH domain protein
YP_003197365.1	TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dal:Dalk_4742 ribosomal protein S15
YP_003197366.1	TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dma:DMR_31630 tRNA pseudouridine synthase B
YP_003197367.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein
YP_003197368.1	TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: tbd:Tbd_0696 ribosome-binding factor A
YP_003197369.1	PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein
YP_003197370.1	TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dma:DMR_31600 translation initiation factor IF-2
YP_003197371.1	PFAM: protein of unknown function DUF448; KEGG: dvu:DVU0509 hypothetical protein
YP_003197372.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_003197373.1	PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein
YP_003197374.1	PFAM: ATP-NAD/AcoX kinase; KEGG: dvm:DvMF_0581 ATP-NAD/AcoX kinase
YP_003197375.1	KEGG: dde:Dde_2617 hypothetical protein
YP_003197376.1	PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase, putative
YP_003197377.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; GatB central domain protein; KEGG: dma:DMR_31400 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
YP_003197378.1	KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related
YP_003197379.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_003197380.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_003197381.1	KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_003197382.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein
YP_003197383.1	TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR
YP_003197384.1	KEGG: dma:DMR_25280 helicase RecD/TraA family protein; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1
YP_003197385.1	TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2222 trigger factor
YP_003197386.1	KEGG: dvl:Dvul_1734 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP
YP_003197387.1	KEGG: dma:DMR_28160 ATP-dependent Clp protease ATP- binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase
YP_003197388.1	KEGG: dvm:DvMF_0112 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase
YP_003197389.1	PFAM: Ferritin Dps family protein; KEGG: sfu:Sfum_1965 ferritin, Dps family protein
YP_003197390.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_003197391.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
YP_003197392.1	PFAM: Redoxin domain protein; KEGG: sat:SYN_00592 hypothetical protein
YP_003197393.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfu:Sfum_2548 redoxin domain protein
YP_003197394.1	KEGG: dde:Dde_1794 hypothetical protein
YP_003197395.1	KEGG: ppd:Ppro_0185 hypothetical protein
YP_003197396.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_003197397.1	KEGG: aeh:Mlg_1165 hypothetical protein
YP_003197398.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_003197399.1	PFAM: ABC transporter, ATPase, predicted; KEGG: hha:Hhal_1066 hypothetical protein
YP_003197400.1	PFAM: extracellular solute-binding protein family 1; KEGG: dat:HRM2_32560 putative sulfate transport system, substrate-binding protein
YP_003197401.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_4086 binding-protein-dependent transport systems inner membrane component
YP_003197402.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dat:HRM2_32540 CysA
YP_003197403.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; KEGG: dol:Dole_0306 electron transport complex, RnfABCDGE type, C subunit
YP_003197404.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like
YP_003197405.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dde:Dde_0583 electron transport complex, RnfABCDGE type, G subunit
YP_003197406.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: dde:Dde_0584 electron transport complex RsxE subunit
YP_003197407.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pha:PSHAa1105 electron transport complex protein RnfA, inner membrane protein
YP_003197408.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0517 ferredoxin
YP_003197409.1	PFAM: UspA domain protein; KEGG: dal:Dalk_0122 UspA domain protein
YP_003197410.1	KEGG: tgr:Tgr7_1086 positive regulator of sigma E, RseC/MucC
YP_003197411.1	PFAM: ApbE family lipoprotein; KEGG: dps:DP0776 thiamine biosynthesis lipoprotein (ApbE) [precursor]
YP_003197412.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_003197413.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; KEGG: dvl:Dvul_1625 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase
YP_003197415.1	PFAM: protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164
YP_003197416.1	PFAM: protein of unknown function DUF34; KEGG: dma:DMR_17790 hypothetical protein
YP_003197417.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_0260 thioredoxin-disulfide reductase
YP_003197418.1	TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein
YP_003197419.1	PFAM: protein of unknown function DUF163; KEGG: lip:LI0891 hypothetical protein
YP_003197420.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP- forming) alpha subunit / succinyl-CoA synthetase (ADP- forming) beta subunit
YP_003197421.1	KEGG: dma:DMR_23250 hypothetical protein
YP_003197422.1	KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_003197423.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator
YP_003197424.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvm:DvMF_3031 intracellular protease, PfpI family
YP_003197425.1	KEGG: dma:DMR_38390 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_003197426.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197427.1	KEGG: dde:Dde_1643 hypothetical protein
YP_003197428.1	PFAM: thioesterase superfamily protein; KEGG: dma:DMR_06370 thioesterase superfamily domain protein
YP_003197429.1	PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: dvm:DvMF_0484 Appr-1-p processing domain protein
YP_003197430.1	heat shock protein involved in degradation of misfolded proteins
YP_003197431.1	KEGG: dma:DMR_38380 ATP-dependent hsl protease ATP- binding subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_003197432.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_46640 TRAP-type C4-dicarboxylate transport system periplasmic component
YP_003197433.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_46650 TRAP-type C4-dicarboxylate transport system, small permease component
YP_003197434.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_46660 putative TRAP C4-dicarboxylate transport system permease DctM subunit
YP_003197435.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dma:DMR_28210 hydantoin utilization protein A
YP_003197436.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: dma:DMR_28190 hydantoin utilization protein B
YP_003197437.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_1978 TolC family type I secretion outer membrane protein
YP_003197438.1	TIGRFAM: type 1 secretion C-terminal target domain; outer membrane adhesin like proteiin; KEGG: cja:CJA_1396 putative hemolysin
YP_003197439.1	KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase
YP_003197440.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein
YP_003197441.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein
YP_003197442.1	KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; SMART: PAS domain containing protein
YP_003197443.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_1208 two component signal transduction response regulator
YP_003197444.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: pca:Pcar_1192 flagellar M-ring protein FliF
YP_003197445.1	TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: pca:Pcar_1191 flagellar motor switch protein FliG
YP_003197446.1	PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pca:Pcar_1190 flagellar biosynthesis protein
YP_003197447.1	KEGG: pca:Pcar_1189 flagellum-specific ATP synthase FliI; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase
YP_003197448.1	TIGRFAM: flagellar export protein FliJ; KEGG: gbm:Gbem_3834 flagellar export protein FliJ
YP_003197449.1	KEGG: pca:Pcar_1187 hypothetical protein
YP_003197450.1	PFAM: flagellar hook-length control protein; KEGG: pca:Pcar_1186 putative flagellar hook-length control protein
YP_003197451.1	PFAM: flagellar hook capping protein; KEGG: pca:Pcar_1185 flagellar hook initiation protein FlgD
YP_003197452.1	TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1183 flagellar biosynthesis, hook protein
YP_003197453.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2665 flagellar motor apparatus (MotA)
YP_003197454.1	PFAM: OmpA/MotB domain protein; KEGG: pca:Pcar_1171 MotB-like flagellar protein
YP_003197455.1	PFAM: flagellar basal body-associated protein FliL; KEGG: pca:Pcar_1170 flagellar basal body-associated protein
YP_003197456.1	TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: pca:Pcar_1169 flagellar biosynthesis protein, component of motor switch
YP_003197457.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: geo:Geob_0506 flagellar motor switch protein FliN
YP_003197458.1	PFAM: flagellar biosynthesis protein FliO; KEGG: pca:Pcar_1167 flagellar biogenesis protein FliO
YP_003197459.1	TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP
YP_003197460.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: pca:Pcar_1165 flagellar biosynthetic protein FliQ
YP_003197461.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: pca:Pcar_1164 flagellar biosynthetic protein FliR
YP_003197462.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_003197463.1	membrane protein involved in the flagellar export apparatus
YP_003197464.1	KEGG: pca:Pcar_1161 flagellar GTP-binding protein; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase
YP_003197465.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_1160 putative flagellar biosynthesis protein FlhG
YP_003197466.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma- 70 region 3 domain protein; KEGG: pca:Pcar_1159 flagellar biosynthesis protein, alternative sigma factor 28
YP_003197467.1	KEGG: rpe:RPE_1804 methyl-accepting chemotaxis sensory transducer
YP_003197468.1	TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dvm:DvMF_2517 protein of unknown function DUF1078 domain protein
YP_003197469.1	TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: pca:Pcar_1156 flagellar basal body rod protein FlgG
YP_003197470.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dps:DP2682 flagellar protein (FlgA)
YP_003197471.1	PFAM: flagellar L-ring protein; KEGG: pca:Pcar_1154 flagellar biosynthesis, basal- body outer-membrane L (lipopolysaccharide layer) ring protein
YP_003197472.1	PFAM: flagellar P-ring protein; KEGG: pca:Pcar_1153 flagellar basal body P-ring protein
YP_003197473.1	PFAM: Flagellar protein FlgJ-like; KEGG: pca:Pcar_1152 putative FlgJ-like flagellar protein
YP_003197474.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197475.1	PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pca:Pcar_1151 putative anti-sigma-28 factor FlgM
YP_003197476.1	KEGG: dps:DP2688 hypothetical protein
YP_003197477.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellin hook IN repeat protein; KEGG: dps:DP2689 flagellar hook-associated protein 1 (FlgK)
YP_003197478.1	TIGRFAM: flagellar hook-associated protein 3; KEGG: pca:Pcar_1148 flagellar hook-filament junction protein
YP_003197479.1	TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: dps:DP2691 carbon storage regulator (CsrA)
YP_003197480.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_003197481.1	KEGG: dal:Dalk_4137 hypothetical protein
YP_003197483.1	KEGG: cja:CJA_0432 SrpA-related protein
YP_003197484.1	TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: dat:HRM2_36710 putative polysaccharide biosynthesis protein (NAD-dependent epimerase/dehydratase family protein)
YP_003197485.1	TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: aeh:Mlg_2323 DegT/DnrJ/EryC1/StrS aminotransferase
YP_003197486.1	PFAM: LmbE family protein; KEGG: pca:Pcar_1118 hypothetical protein
YP_003197487.1	PFAM: peptidase M20; KEGG: bav:BAV0460 amidohydrolase/peptidase/deacetylase
YP_003197488.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: vei:Veis_1396 oxidoreductase domain- containing protein
YP_003197489.1	PFAM: N-acetylneuraminic acid synthase domain; KEGG: gme:Gmet_0455 N-acetylneuraminate synthase
YP_003197490.1	PFAM: formyl transferase domain protein; KEGG: gur:Gura_0819 methionyl-tRNA formyltransferase
YP_003197491.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_0421 spore coat polysaccharide biosynthesis protein FlmC
YP_003197492.1	PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: gme:Gmet_0453 hypothetical protein
YP_003197493.1	KEGG: dde:Dde_0419 hypothetical protein
YP_003197494.1	PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: dde:Dde_0418 hypothetical protein
YP_003197495.1	KEGG: dat:HRM2_36850 NeuA; TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase
YP_003197496.1	PFAM: transposase IS4 family protein; KEGG: dal:Dalk_3879 transposase-like protein
YP_003197497.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase
YP_003197498.1	PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein
YP_003197499.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ecl:EcolC_2197 RNA-directed DNA polymerase (reverse transcriptase)
YP_003197500.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein
YP_003197501.1	PFAM: protein of unknown function DUF115; KEGG: pat:Patl_3053 hypothetical protein
YP_003197502.1	PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein
YP_003197503.1	PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein
YP_003197504.1	PFAM: flagellar protein FlaG protein; KEGG: lhk:LHK_02704 FlaG
YP_003197505.1	PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: spl:Spea_1354 flagellar hook-associated 2 domain-containing protein
YP_003197506.1	TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: gur:Gura_4093 flagellar protein FliS
YP_003197508.1	PFAM: type IV pilus assembly PilZ; KEGG: pca:Pcar_1109 hypothetical protein
YP_003197509.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA208 transposition helper protein
YP_003197510.1	PFAM: Integrase catalytic region; KEGG: dma:DMR_29110 putative transposase orfA for insertion sequence element
YP_003197512.1	KEGG: dps:DP2483 hypothetical protein
YP_003197513.1	PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element
YP_003197514.1	PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase
YP_003197515.1	KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element
YP_003197516.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197518.1	KEGG: pca:Pcar_1105 hypothetical protein
YP_003197519.1	KEGG: dps:DP2649 two-component system response regulator
YP_003197520.1	KEGG: pca:Pcar_1206 inhibitor of MCP methylation, CheC-like
YP_003197521.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pca:Pcar_1205 CheY response regulator
YP_003197522.1	KEGG: pca:Pcar_1196 hypothetical protein
YP_003197523.1	TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: geo:Geob_0491 flagellar basal-body rod protein FlgB
YP_003197524.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1194 flagellar basal-body rod protein FlgC
YP_003197525.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE
YP_003197526.1	PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ank:AnaeK_2487 CheA signal transduction histidine kinase
YP_003197527.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer
YP_003197528.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein
YP_003197529.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer
YP_003197530.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer
YP_003197531.1	KEGG: ank:AnaeK_2486 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type
YP_003197532.1	PFAM: CheD family protein; KEGG: dal:Dalk_0652 CheD
YP_003197533.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_34440 putative chemotaxis response regulator receiver (CheY-like)
YP_003197535.1	KEGG: dal:Dalk_0655 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver
YP_003197536.1	KEGG: dvm:DvMF_0939 hypothetical protein
YP_003197537.1	PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: rfr:Rfer_1986 metal dependent phosphohydrolase
YP_003197539.1	KEGG: pca:Pcar_1201 CheD-like chemotaxis protein
YP_003197540.1	KEGG: pca:Pcar_1202 signal transduction protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003197541.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: lpn:lpg1130 adenylate cyclase
YP_003197542.1	PFAM: ADP-ribosylation/Crystallin J1; KEGG: dal:Dalk_0314 ADP-ribosylation/crystallin J1
YP_003197543.1	PFAM: cobalamin B12-binding domain protein; KEGG: scl:sce4024 putative cobalamin binding protein
YP_003197544.1	KEGG: dde:Dde_3087 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003197545.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein
YP_003197546.1	PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component
YP_003197547.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component
YP_003197548.1	PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component
YP_003197549.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dma:DMR_39340 putative phosphoesterase
YP_003197550.1	TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dvm:DvMF_2132 translation initiation factor IF-1
YP_003197551.1	KEGG: dde:Dde_2611 putative lipoprotein
YP_003197552.1	KEGG: dde:Dde_2610 hypothetical protein
YP_003197553.1	PFAM: shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase
YP_003197555.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein
YP_003197556.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_003197557.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein
YP_003197558.1	KEGG: dvu:DVU1890 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase
YP_003197559.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvm:DvMF_0418 biotin/acetyl-CoA-carboxylase ligase
YP_003197560.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_003197561.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase
YP_003197562.1	KEGG: dde:Dde_3025 hypothetical protein
YP_003197564.1	PFAM: thioesterase superfamily protein; KEGG: dat:HRM2_17880 acyl-CoA thioester hydrolase
YP_003197565.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 GNAT family acetyltransferase
YP_003197566.1	KEGG: dde:Dde_0189 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein
YP_003197567.1	PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like
YP_003197568.1	KEGG: tgr:Tgr7_0019 hypothetical protein
YP_003197570.1	PFAM: Ion transport 2 domain protein; KEGG: pca:Pcar_2531 hypothetical protein
YP_003197571.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_0090 two component, sigma54 specific, Fis family transcriptional regulator
YP_003197573.1	PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator
YP_003197574.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dal:Dalk_5266 pyruvate, water dikinase
YP_003197575.1	PFAM: glycosyl transferase group 1; KEGG: bja:bll6635 glycosyl transferase
YP_003197576.1	KEGG: sfu:Sfum_0551 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003197578.1	KEGG: sfu:Sfum_3317 drug resistance transporter, EmrB/QacA subfamily
YP_003197579.1	KEGG: hypothetical protein
YP_003197580.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; Protein of unknown function, PGPGW, transmembrane; KEGG: tbd:Tbd_2520 K+-dependent Na+/Ca+ exchanger related-protein
YP_003197581.1	KEGG: dma:DMR_24260 hypothetical protein
YP_003197582.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: dma:DMR_16950 hypothetical membrane protein
YP_003197583.1	PFAM: methyltransferase small; putative RNA methylase; KEGG: dde:Dde_3501 hypothetical protein
YP_003197584.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein
YP_003197585.1	PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein
YP_003197586.1	PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase
YP_003197587.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like
YP_003197588.1	PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein
YP_003197589.1	PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11450 heat shock protein HSP20 family protein
YP_003197590.1	PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11460 heat shock protein HSP20 family protein
YP_003197591.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase
YP_003197592.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sfu:Sfum_0420 cyclic nucleotide-binding protein
YP_003197593.1	KEGG: dol:Dole_2356 hypothetical protein
YP_003197594.1	KEGG: dde:Dde_0181 hypothetical protein
YP_003197595.1	PFAM: peptidase M24; creatinase; KEGG: dvm:DvMF_1929 peptidase M24
YP_003197596.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mxa:MXAN_3269 thiamine biosynthesis protein ThiS
YP_003197597.1	PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase
YP_003197598.1	TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH
YP_003197599.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvm:DvMF_0798 thiamine biosynthesis protein ThiF
YP_003197600.1	KEGG: dvl:Dvul_1139 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_003197601.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15300 hypothetical protein
YP_003197602.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_003197603.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15340 hypothetical protein
YP_003197604.1	forms a direct contact with the tRNA during translation
YP_003197605.1	TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: dde:Dde_2607 50S ribosomal protein L13
YP_003197606.1	KEGG: dvl:Dvul_0727 hypothetical protein
YP_003197607.1	TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dma:DMR_33360 protein MraZ
YP_003197608.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase
YP_003197609.1	KEGG: dma:DMR_33340 hypothetical protein
YP_003197610.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dma:DMR_33330 peptidoglycan synthetase FtsI precursor
YP_003197611.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
YP_003197612.1	TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33310 UDP-N-acetylmuramoyl-tripeptide- -D-alanyl-D-alanine ligase
YP_003197613.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_003197614.1	TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33290 UDP-N-acetylmuramoylalanine--D- glutamate ligase
YP_003197615.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dma:DMR_33280 cell division protein FtsW
YP_003197616.1	KEGG: dvl:Dvul_0741 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28
YP_003197617.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_003197618.1	KEGG: dvl:Dvul_0743 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein
YP_003197619.1	PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvm:DvMF_0953 polypeptide-transport- associated domain protein FtsQ-type
YP_003197620.1	TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: dvl:Dvul_0745 cell division protein FtsA
YP_003197621.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_003197622.1	molecular chaperone
YP_003197623.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase
YP_003197624.1	KEGG: dat:HRM2_18850 hypothetical protein
YP_003197625.1	PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dol:Dole_2023 hypothetical protein
YP_003197626.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dds:Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein
YP_003197627.1	KEGG: dds:Ddes_1472 hypothetical protein
YP_003197628.1	PFAM: UspA domain protein; KEGG: afw:Anae109_0806 UspA domain-containing protein
YP_003197629.1	KEGG: dds:Ddes_1739 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein
YP_003197630.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_003197631.1	catalyzes the removal of amino acids from the N termini of peptides
YP_003197632.1	TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor
YP_003197633.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_003197634.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein
YP_003197635.1	KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib
YP_003197636.1	PFAM: peptidase M50; KEGG: dma:DMR_30590 peptidase M50B family protein
YP_003197637.1	PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2329 glycosyl transferase family 2
YP_003197638.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_29620 ABC-type glycine betaine/proline transport system, periplasmic glycine betaine/proline-binding protein
YP_003197639.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_29610 ABC-type glycine betaine/proline transport system, inner membrane permease protein
YP_003197640.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2353 binding-protein-dependent transport systems inner membrane component
YP_003197641.1	KEGG: dat:HRM2_29570 ABC-type glycine betaine/proline transport system, ATP-binding protein (ATPase); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase
YP_003197642.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase
YP_003197643.1	KEGG: gsu:GSU1612 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase
YP_003197644.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU1528 ABC transporter, periplasmic substrate-binding protein
YP_003197645.1	PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2048 major facilitator superfamily transporter
YP_003197646.1	PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvm:DvMF_1859 putative two component, sigma54 specific, transcriptional regulator, fis family
YP_003197647.1	KEGG: dvm:DvMF_1858 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_003197648.1	PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dde:Dde_1253 malate dehydrogenase
YP_003197649.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: dvl:Dvul_0082 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_003197650.1	TIGRFAM: SagB-type dehydrogenase domain; PFAM: nitroreductase; KEGG: dal:Dalk_3108 nitroreductase
YP_003197651.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_003197652.1	KEGG: dvm:DvMF_0613 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase
YP_003197653.1	KEGG: dvl:Dvul_2509 hypothetical protein
YP_003197655.1	KEGG: dvl:Dvul_0991 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase
YP_003197656.1	KEGG: dma:DMR_03780 hypothetical protein
YP_003197657.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dat:HRM2_35320 putative cyclic nucleotide- binding protein
YP_003197658.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rec:RHECIAT_CH0003629 putative monovalent cation/H+ antiporter subunit D
YP_003197659.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rhi:NGR_c22160 hypothetical protein
YP_003197660.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dat:HRM2_35350 MnhA2
YP_003197661.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dal:Dalk_4922 NADH dehydrogenase (quinone)
YP_003197662.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dal:Dalk_4921 NADH-ubiquinone oxidoreductase chain 4L
YP_003197663.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: dat:HRM2_35390 MnhG
YP_003197664.1	PFAM: multiple resistance and pH regulation protein F; KEGG: dal:Dalk_4918 multiple resistance and pH regulation protein F
YP_003197665.1	PFAM: cation antiporter; KEGG: dat:HRM2_35410 MnhE
YP_003197666.1	KEGG: dma:DMR_23660 hypothetical protein
YP_003197667.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_003197668.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_003197669.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dma:DMR_23650 potassium channel protein
YP_003197670.1	KEGG: dvu:DVU1608 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein
YP_003197671.1	PFAM: protein of unknown function DUF362; KEGG: pca:Pcar_2517 putative iron-sulfur cluster- binding protein
YP_003197672.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_003197673.1	KEGG: dvl:Dvul_1993 hypothetical protein
YP_003197674.1	TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dma:DMR_23960 outer membrane lipoprotein carrier protein precursor
YP_003197675.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dvm:DvMF_0369 pseudouridine synthase
YP_003197676.1	TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; KEGG: dvm:DvMF_0368 hypothetical protein
YP_003197677.1	PFAM: protein of unknown function DUF374; KEGG: dvm:DvMF_0366 protein of unknown function DUF374
YP_003197678.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: dvm:DvMF_0365 lipid A biosynthesis acyltransferase
YP_003197679.1	PFAM: SUA5/yciO/yrdC domain; KEGG: dma:DMR_22900 hypothetical protein
YP_003197680.1	PFAM: glycosyl transferase family 9; KEGG: dma:DMR_22890 putative glycosyltransferase
YP_003197681.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein
YP_003197682.1	PFAM: ROK family protein; KEGG: gbm:Gbem_1326 ROK family protein
YP_003197683.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: dvm:DvMF_0841 glycogen/starch synthase, ADP- glucose type
YP_003197684.1	PFAM: glycoside hydrolase family 13 domain protein; KEGG: dma:DMR_37990 hypothetical protein
YP_003197685.1	KEGG: dma:DMR_22850 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_003197686.1	PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2318 transcriptional regulator
YP_003197687.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dvm:DvMF_0003 AMP-dependent synthetase and ligase
YP_003197688.1	KEGG: lpf:lpl0227 hypothetical protein
YP_003197690.1	KEGG: dar:Daro_0659 hypothetical protein
YP_003197691.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eic:NT01EI_1213 nitrate/nitrite response regulator protein NarP
YP_003197692.1	PFAM: peptidase S16 lon domain protein; KEGG: ade:Adeh_1447 ATP-dependent protease, putative
YP_003197693.1	PFAM: UspA domain protein; KEGG: aeh:Mlg_1516 UspA domain-containing protein
YP_003197694.1	PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: sat:SYN_00230 response regulator receiver domain-containing protein
YP_003197695.1	KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop
YP_003197696.1	KEGG: dvm:DvMF_1980 hypothetical protein
YP_003197697.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein
YP_003197698.1	KEGG: dma:DMR_17290 hypothetical protein
YP_003197699.1	TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dma:DMR_30710 cysteine synthase B
YP_003197700.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; GAF domain protein; KEGG: dde:Dde_1635 Fis family transcriptional regulator
YP_003197701.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1218 indolepyruvate ferredoxin oxidoreductase
YP_003197702.1	KEGG: dvu:DVU1951 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003197703.1	KEGG: dvm:DvMF_0611 hypothetical protein
YP_003197704.1	PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D
YP_003197705.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dde:Dde_3628 secretion protein HlyD
YP_003197706.1	KEGG: dvm:DvMF_0308 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_003197707.1	KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase
YP_003197708.1	KEGG: dvm:DvMF_0487 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_003197709.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; KEGG: dma:DMR_29440 50S ribosomal protein L25
YP_003197710.1	KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase
YP_003197711.1	PFAM: transcription factor CarD; KEGG: dma:DMR_29460 hypothetical protein
YP_003197712.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_003197713.1	PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0483 peptidase M48 Ste24p
YP_003197714.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC
YP_003197715.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_003197716.1	TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1819 preprotein translocase subunit SecF
YP_003197718.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase)
YP_003197719.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_003197720.1	TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dma:DMR_21080 transketolase
YP_003197721.1	KEGG: dvm:DvMF_0481 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase
YP_003197722.1	KEGG: dvl:Dvul_1552 hypothetical protein
YP_003197724.1	KEGG: dma:DMR_21100 hypothetical protein
YP_003197725.1	PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein
YP_003197726.1	KEGG: dal:Dalk_1411 hypothetical protein
YP_003197727.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: dma:DMR_21120 RNA polymerase sigma factor
YP_003197728.1	PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: dde:Dde_2115 methionine synthase (B12- dependent)
YP_003197729.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dma:DMR_21140 thioredoxin-related domain protein
YP_003197730.1	catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate
YP_003197731.1	KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_003197732.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: dvu:DVU1589 hypothetical protein
YP_003197733.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_003197734.1	KEGG: sat:SYN_02712 hypothetical protein
YP_003197735.1	KEGG: dde:Dde_2292 hypothetical protein
YP_003197736.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family
YP_003197737.1	KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein
YP_003197738.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein
YP_003197739.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein
YP_003197740.1	PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein
YP_003197741.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvm:DvMF_2593 protein of unknown function DUF224 cysteine-rich region domain protein
YP_003197742.1	KEGG: dol:Dole_2254 hmc operon protein 5
YP_003197743.1	KEGG: dde:Dde_0650 hmc operon protein 4
YP_003197744.1	PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_2252 polysulphide reductase NrfD
YP_003197745.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein
YP_003197746.1	PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III
YP_003197747.1	KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_003197748.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family
YP_003197749.1	KEGG: similar to GTPase, IMAP family member 8
YP_003197750.1	KEGG: dma:DMR_11630 lipoate-protein ligase; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like
YP_003197752.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase)
YP_003197753.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like
YP_003197754.1	KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003197755.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin
YP_003197756.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; GAF domain protein; Metal- dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: scl:sce2546 putative regulatory protein
YP_003197757.1	KEGG: dde:Dde_1579 hypothetical protein
YP_003197758.1	KEGG: dvm:DvMF_0772 tol-pal system protein YbgF
YP_003197759.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative
YP_003197760.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dma:DMR_34030 tyrosine recombinase XerC
YP_003197761.1	KEGG: dvm:DvMF_1921 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop
YP_003197762.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_003197763.1	KEGG: dvm:DvMF_0164 hypothetical protein
YP_003197764.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0166 formate dehydrogenase
YP_003197765.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0165 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003197767.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: dma:DMR_28930 UmuC protein
YP_003197768.1	PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: dvl:Dvul_0458 putative prophage repressor
YP_003197769.1	PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_1617 glycoside hydrolase
YP_003197770.1	KEGG: sfu:Sfum_1387 hypothetical protein
YP_003197771.1	KEGG: pfl:PFL_2863 signaling repeat/GGDEF domain/EAL domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_003197772.1	PFAM: zinc/iron permease; KEGG: dal:Dalk_3018 zinc transporter ZupT
YP_003197773.1	PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3217 sodium/hydrogen exchanger
YP_003197774.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system
YP_003197775.1	KEGG: nmu:Nmul_A1401 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_003197776.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dvu:DVU0442 PhoH-related protein
YP_003197777.1	PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator
YP_003197778.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein
YP_003197779.1	PFAM: regulatory protein IclR; KEGG: atc:AGR_L_119 hypothetical protein
YP_003197780.1	TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: bmj:BMULJ_04947 choline-sulfatase
YP_003197781.1	PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein
YP_003197782.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein; KEGG: sfr:Sfri_0511 flavocytochrome c
YP_003197783.1	TIGRFAM: TonB family protein; KEGG: dvl:Dvul_0505 TonB family protein
YP_003197784.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0506 biopolymer transport protein ExbD/TolR
YP_003197785.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_0507 MotA/TolQ/ExbB proton channel
YP_003197786.1	PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K
YP_003197787.1	KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein
YP_003197788.1	KEGG: sfu:Sfum_3608 hypothetical protein
YP_003197790.1	PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH
YP_003197791.1	KEGG: dde:Dde_1612 hypothetical protein
YP_003197792.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: plu:plu2765 hypothetical protein
YP_003197794.1	KEGG: pin:Ping_3147 hypothetical protein
YP_003197796.1	KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element
YP_003197797.1	PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase
YP_003197798.1	PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element
YP_003197799.1	KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein
YP_003197800.1	KEGG: dol:Dole_1521 hypothetical protein
YP_003197801.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein
YP_003197802.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer
YP_003197803.1	PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dol:Dole_3262 two component, sigma54 specific, Fis family transcriptional regulator
YP_003197804.1	PFAM: histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0300 putative sensor with HAMP domain
YP_003197805.1	KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_003197806.1	KEGG: aav:Aave_3971 hypothetical protein
YP_003197808.1	PFAM: GntR domain protein; KEGG: dat:HRM2_28260 hypothetical protein
YP_003197810.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_08540 transporter Bcr/CflA subfamily
YP_003197812.1	PFAM: glucose sorbosone dehydrogenase; KEGG: dat:HRM2_43850 glucose/sorbosone dehydrogenase
YP_003197813.1	KEGG: sat:SYN_02350 hypothetical protein
YP_003197814.1	PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: dol:Dole_0431 bilirubin oxidase
YP_003197815.1	KEGG: bja:bll2566 hypothetical protein
YP_003197816.1	KEGG: ank:AnaeK_1209 hypothetical protein
YP_003197817.1	PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family
YP_003197818.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_3588 radical SAM domain-containing protein
YP_003197819.1	in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine
YP_003197820.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003197822.1	KEGG: bur:Bcep18194_B0172 hypothetical protein
YP_003197823.1	KEGG: fph:Fphi_1301 hypothetical protein
YP_003197824.1	PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein
YP_003197825.1	KEGG: dds:Ddes_0329 transcriptional regulator, XRE family
YP_003197827.1	KEGG: ajs:Ajs_3614 phage integrase family protein
YP_003197828.1	PFAM: integrase family protein; KEGG: dma:DMR_36050 phage integrase family protein
YP_003197829.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase)
YP_003197831.1	KEGG: dvl:Dvul_2740 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like
YP_003197832.1	PFAM: Uncharacterised protein family UPF0324; KEGG: noc:Noc_1683 hypothetical protein
YP_003197833.1	KEGG: nmu:Nmul_A2602 hypothetical protein
YP_003197835.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase
YP_003197836.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvu:DVU0539 sigma-54 dependent DNA-binding response regulator
YP_003197837.1	PFAM: CinA domain protein; KEGG: hypothetical protein
YP_003197839.1	TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: dma:DMR_39270 2'-5' RNA ligase
YP_003197840.1	PFAM: protein of unknown function DUF1614; KEGG: sfu:Sfum_0878 protein of unknown function DUF1614
YP_003197841.1	PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dma:DMR_20910 putative ABC transporter
YP_003197842.1	KEGG: dvm:DvMF_2255 hypothetical protein
YP_003197843.1	PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1956 heptosyltransferase family protein
YP_003197844.1	PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3800 glycosyl transferase, group 1
YP_003197845.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: dvm:DvMF_3135 histidinol-phosphate phosphatase family protein
YP_003197846.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dma:DMR_22520 hypothetical protein
YP_003197847.1	KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE
YP_003197848.1	PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF
YP_003197849.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1476 ATPase
YP_003197850.1	PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB
YP_003197851.1	PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC
YP_003197853.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_1473 TPR repeat-containing protein
YP_003197854.1	KEGG: dma:DMR_22400 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; SMART: CBS domain containing protein
YP_003197855.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_003197856.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_22380 sec-independent protein translocase protein TatB
YP_003197857.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dvm:DvMF_3123 sec-independent protein translocase, TatC subunit
YP_003197858.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dma:DMR_22370 imidazoleglycerol-phosphate dehydratase
YP_003197859.1	KEGG: dde:Dde_1466 putative lipoprotein
YP_003197860.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_003197861.1	PFAM: Heavy metal transport/detoxification protein; KEGG: sfu:Sfum_3224 heavy metal transport/detoxification protein
YP_003197862.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dat:HRM2_05320 UraA
YP_003197863.1	TIGRFAM: uracil phosphoribosyltransferase; KEGG: dat:HRM2_05330 Upp
YP_003197864.1	TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; PFAM: pseudouridine synthase; Dephospho-CoA kinase; RNA-binding S4 domain protein; KEGG: dma:DMR_23610 ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase
YP_003197865.1	PFAM: Rhomboid family protein; KEGG: dvm:DvMF_0913 rhomboid family protein
YP_003197866.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0914 ABC transporter related
YP_003197867.1	PFAM: SufBD protein; KEGG: dma:DMR_23420 SufBD family protein
YP_003197868.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003197869.1	PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB
YP_003197870.1	KEGG: dma:DMR_36590 putative transposase
YP_003197871.1	KEGG: dvm:DvMF_3045 hypothetical protein
YP_003197872.1	PFAM: protein of unknown function UPF0153; KEGG: dds:Ddes_0986 protein of unknown function UPF0153
YP_003197873.1	PFAM: Radical SAM domain protein; KEGG: dma:DMR_21460 hypothetical protein
YP_003197874.1	PFAM: peptidase M24; creatinase; KEGG: dvu:DVU1000 M24 family peptidase
YP_003197875.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: dat:HRM2_16990 McpA3
YP_003197876.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_42990 PpsA8
YP_003197877.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0431 putative ATP-binding component of a transport system
YP_003197878.1	KEGG: dvm:DvMF_2942 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase
YP_003197879.1	KEGG: tgr:Tgr7_0877 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase
YP_003197880.1	KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_003197881.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor
YP_003197882.1	KEGG: dat:HRM2_39510 IstA2
YP_003197884.1	KEGG: gbm:Gbem_2047 type IV pilus assembly PilZ
YP_003197885.1	PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase
YP_003197886.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppd:Ppro_1409 methyltransferase type 12
YP_003197887.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dma:DMR_32970 cation efflux family protein
YP_003197888.1	PFAM: Protein of unknown function DUF2219; KEGG: dvm:DvMF_0587 hypothetical protein
YP_003197889.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_15950 putative hydrolase
YP_003197890.1	PFAM: band 7 protein; SMART: band 7 protein; KEGG: dma:DMR_00100 hypothetical protein
YP_003197891.1	PFAM: protein of unknown function DUF107; KEGG: dma:DMR_00090 hypothetical membrane protein
YP_003197893.1	PFAM: cytochrome c class III; KEGG: dvl:Dvul_2715 acidic cytochrome c3
YP_003197894.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2714 hypothetical protein
YP_003197895.1	KEGG: dol:Dole_0303 hypothetical protein
YP_003197896.1	KEGG: dol:Dole_0304 hypothetical protein
YP_003197897.1	PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dat:HRM2_28330 HdrD3
YP_003197898.1	PFAM: protein of unknown function DUF162; KEGG: dvl:Dvul_0341 hypothetical protein
YP_003197899.1	PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein
YP_003197900.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dvl:Dvul_0343 acetate kinase
YP_003197901.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_003197902.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
YP_003197903.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_1863 protein of unknown function DUF224 cysteine-rich region domain protein
YP_003197904.1	PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD
YP_003197905.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport
YP_003197906.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dat:HRM2_38070 transcriptional regulator (MarR family protein)
YP_003197907.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gsu:GSU1399 magnesium and cobalt transport protein CorA
YP_003197908.1	PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_3002 SNARE associated Golgi protein
YP_003197909.1	SMART: Water Stress and Hypersensitive response domain protein; KEGG: dal:Dalk_0831 water stress and hypersensitive response domain protein
YP_003197910.1	TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: dat:HRM2_05150 Na / phosphate-cotransporter family protein
YP_003197912.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: abo:ABO_0256 7,8-diaminononanoate transaminase
YP_003197913.1	TIGRFAM: dethiobiotin synthase; KEGG: dol:Dole_0681 dethiobiotin synthase
YP_003197914.1	KEGG: dol:Dole_0682 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003197915.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dma:DMR_18950 putative biotin synthesis protein BioC
YP_003197916.1	KEGG: dma:DMR_18960 hypothetical protein
YP_003197917.1	PFAM: aminotransferase class I and II; KEGG: dma:DMR_18980 8-amino-7-oxononanoate synthase
YP_003197918.1	PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein
YP_003197919.1	PFAM: helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: aeh:Mlg_1473 helicase domain-containing protein
YP_003197920.1	KEGG: dma:DMR_10450 hypothetical protein
YP_003197921.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: dde:Dde_3305 choline/carnitine/betaine transport
YP_003197922.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_3306 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein
YP_003197923.1	TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; KEGG: dma:DMR_15630 hypothetical protein
YP_003197924.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dal:Dalk_4013 rhodanese domain protein
YP_003197925.1	PFAM: DoxX family protein; KEGG: dal:Dalk_4014 DoxX family protein
YP_003197926.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: amc:MADE_02071 lysine exporter protein (LysE/YggA)
YP_003197927.1	PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein
YP_003197928.1	TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvl:Dvul_2618 5-formyltetrahydrofolate cyclo- ligase
YP_003197929.1	PFAM: metallophosphoesterase; KEGG: dma:DMR_23200 hypothetical protein
YP_003197930.1	KEGG: dma:DMR_23180 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_003197931.1	PFAM: Fumarate reductase respiratory complex; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit
YP_003197932.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003197933.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003197934.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_003197935.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvl:Dvul_0124 tartrate/fumarate subfamily Fe- S type hydro-lyase beta subunit
YP_003197936.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase
YP_003197937.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dma:DMR_20320 carbamoyl-phosphate synthase small chain
YP_003197938.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_003197939.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative
YP_003197940.1	KEGG: dvl:Dvul_2649 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein
YP_003197941.1	TIGRFAM: metal dependent phophohydrolase; KEGG: dde:Dde_0365 metal dependent phosphohydrolase
YP_003197942.1	TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dds:Ddes_0801 hydrogenase formation HypD protein
YP_003197943.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dvl:Dvul_2656 hydrogenase expression/formation protein HypE
YP_003197944.1	KEGG: dma:DMR_26630 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_003197945.1	PFAM: dihydrouridine synthase DuS; KEGG: dvu:DVU0054 dihydrouridine synthase family protein
YP_003197946.1	PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein
YP_003197947.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: dma:DMR_19960 DNA-directed RNA polymerase omega subunit
YP_003197948.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_003197949.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC
YP_003197950.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_003197951.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_003197952.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6- epimerase precursor
YP_003197953.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL
YP_003197954.1	PFAM: Organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative
YP_003197956.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_05100 hypothetical membrane protein
YP_003197957.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2857 ABC transporter related
YP_003197958.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1919 polar amino acid ABC transporter, inner membrane subunit
YP_003197959.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein
YP_003197960.1	TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: dma:DMR_27040 30S ribosomal protein S6
YP_003197961.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_003197962.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_003197963.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dvu:DVU0959 replicative DNA helicase
YP_003197964.1	PFAM: protein of unknown function DUF456; KEGG: dds:Ddes_0940 protein of unknown function DUF456
YP_003197965.1	TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_0171 L-threonine synthase
YP_003197966.1	KEGG: dvl:Dvul_0387 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_003197967.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_2379 ABC transporter related
YP_003197968.1	PFAM: NUDIX hydrolase; KEGG: dvm:DvMF_2380 NUDIX hydrolase
YP_003197969.1	KEGG: gme:Gmet_1393 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase
YP_003197970.1	PFAM: Type II secretion system F domain; KEGG: dal:Dalk_1782 type II secretion system protein
YP_003197971.1	KEGG: dma:DMR_16040 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_003197972.1	KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding
YP_003197973.1	PFAM: aminotransferase class IV; KEGG: dma:DMR_16060 aminotransferase class IV
YP_003197974.1	PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_2384 glycosyl transferase group 1
YP_003197976.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein
YP_003197977.1	KEGG: dma:DMR_22050 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase
YP_003197978.1	KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase
YP_003197979.1	PFAM: NIL domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0262 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003197980.1	KEGG: dde:Dde_2145 TPR domain-containing protein; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat
YP_003197981.1	KEGG: dvm:DvMF_0264 hypothetical protein
YP_003197982.1	TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dal:Dalk_1768 prolipoprotein diacylglyceryl transferase
YP_003197983.1	TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: dma:DMR_22180 lipoprotein signal peptidase
YP_003197984.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_003197985.1	TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: dvm:DvMF_0821 purine nucleoside phosphorylase
YP_003197986.1	PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP- binding; KEGG: dma:DMR_12700 acetyl-CoA carboxylase biotin carboxylase subunit
YP_003197987.1	PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase
YP_003197988.1	KEGG: dvm:DvMF_0815 hypothetical protein
YP_003197989.1	KEGG: dvl:Dvul_1018 hypothetical protein
YP_003197990.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dds:Ddes_0455 single-strand binding protein
YP_003197991.1	KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein
YP_003197992.1	KEGG: dma:DMR_24220 hypothetical protein
YP_003197994.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_24200 chromosome partitioning protein ParA
YP_003197995.1	PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase
YP_003197996.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF
YP_003197997.1	PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_33110 putative FAD linked oxidase
YP_003197998.1	KEGG: dma:DMR_11340 phenylacetate-coenzyme A ligase
YP_003197999.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bav:BAV2835 ABC transporter, ATP-binding protein
YP_003198000.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_4073 ABC transporter related
YP_003198001.1	PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2187 inner-membrane translocator
YP_003198002.1	PFAM: inner-membrane translocator; KEGG: dma:DMR_22440 ABC transporter permease protein
YP_003198003.1	PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein
YP_003198004.1	PFAM: amino acid-binding ACT domain protein; KEGG: dvm:DvMF_0447 amino acid-binding ACT domain protein
YP_003198005.1	KEGG: dma:DMR_25440 phenylacetate-coenzyme A ligase
YP_003198006.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dma:DMR_25430 hypothetical protein
YP_003198007.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_003198008.1	KEGG: dvm:DvMF_0438 hypothetical protein
YP_003198009.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: maq:Maqu_2825 hypothetical protein
YP_003198010.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_003198011.1	KEGG: pla:Plav_1484 phosphatidylcholine synthase
YP_003198012.1	PFAM: UspA domain protein; KEGG: sfu:Sfum_0818 UspA domain protein
YP_003198013.1	PFAM: Class I peptide chain release factor; KEGG: tgr:Tgr7_1684 class I peptide chain release factor
YP_003198014.1	PFAM: metallophosphoesterase; KEGG: dat:HRM2_43350 DNA repair exonuclease family protein
YP_003198015.1	PFAM: SMC domain protein; KEGG: dat:HRM2_43340 hypothetical protein
YP_003198016.1	KEGG: tmz:Tmz1t_0643 methyltransferase type 12
YP_003198017.1	KEGG: cvi:CV_2648 D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_003198018.1	KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Transcriptional regulator, histidine kinase sensor-like; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein
YP_003198019.1	KEGG: har:HEAR1092 putative sensory protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein
YP_003198020.1	SMART: AAA ATPase; KEGG: sat:SYN_00051 ATPase with chaperone activity
YP_003198021.1	KEGG: csa:Csal_2511 hypothetical protein
YP_003198022.1	PFAM: OmpA/MotB domain protein; KEGG: dat:HRM2_27280 OmpA2
YP_003198023.1	PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01500 TPR repeat-containing protein
YP_003198024.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01501 TPR repeat-containing protein
YP_003198025.1	PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1500 type II secretion system protein
YP_003198026.1	PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1499 type II secretion system protein
YP_003198027.1	PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E
YP_003198028.1	KEGG: sfu:Sfum_1497 response regulator receiver protein
YP_003198029.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: vvy:VV2658 hypothetical protein
YP_003198030.1	PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family protein
YP_003198031.1	PFAM: TadE family protein; KEGG: sfu:Sfum_1495 TadE family protein
YP_003198033.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: sfu:Sfum_1493 type II and III secretion system protein
YP_003198034.1	TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sfu:Sfum_1492 SAF domain
YP_003198035.1	PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein
YP_003198036.1	PFAM: peptidase A24A prepilin type IV; KEGG: sat:SYN_01490 flp pilus assembly protein, protease
YP_003198037.1	PFAM: Flp/Fap pilin component; KEGG: dps:DP1538 pilus assembly protein pilin subunit
YP_003198038.1	PFAM: Flp/Fap pilin component; KEGG: afw:Anae109_3972 Flp/Fap pilin component
YP_003198039.1	PFAM: glycosyl transferase family 2; KEGG: rpi:Rpic_0600 glycosyl transferase family 2
YP_003198040.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003198041.1	KEGG: dat:HRM2_39510 IstA2
YP_003198042.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor
YP_003198043.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003198044.1	KEGG: ppd:Ppro_2695 hypothetical protein
YP_003198045.1	PFAM: Protein of unknown function DUF2079, membrane; KEGG: scl:sce7388 hypothetical protein
YP_003198046.1	PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2
YP_003198047.1	PFAM: glycosyl transferase group 1; KEGG: amc:MADE_02589 glycosyltransferase
YP_003198049.1	KEGG: scl:sce8020 hypothetical protein
YP_003198050.1	KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein
YP_003198051.1	PFAM: Metal-dependent hydrolase HDOD; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rfr:Rfer_2486 histidine kinase
YP_003198053.1	PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein
YP_003198054.1	PFAM: band 7 protein; SMART: band 7 protein; KEGG: dps:DP1869 hypothetical protein
YP_003198055.1	PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: dma:DMR_40640 putative transport protein
YP_003198056.1	KEGG: dal:Dalk_5271 hypothetical protein
YP_003198057.1	KEGG: dol:Dole_2385 hypothetical protein
YP_003198058.1	KEGG: dol:Dole_2384 hypothetical protein
YP_003198059.1	PFAM: Protein of unknown function DUF2177, membrane; KEGG: dol:Dole_0351 hypothetical protein
YP_003198060.1	PFAM: Auxin Efflux Carrier; KEGG: dat:HRM2_47110 putative permease
YP_003198061.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: glo:Glov_3339 phage SPO1 DNA polymerase- related protein
YP_003198062.1	KEGG: dps:DP1297 hypothetical protein
YP_003198063.1	KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein
YP_003198064.1	KEGG: gsu:GSU1412 hypothetical protein
YP_003198065.1	PFAM: Bile acid:sodium symporter; UspA domain protein; KEGG: dal:Dalk_1082 bile acid:sodium symporter
YP_003198066.1	PFAM: Thioredoxin domain; KEGG: dal:Dalk_1080 thioredoxin
YP_003198067.1	KEGG: dal:Dalk_1079 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein
YP_003198068.1	PFAM: PEBP family protein; KEGG: sun:SUN_0961 hypothetical protein
YP_003198069.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0285 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003198070.1	PFAM: nitroreductase; KEGG: dvl:Dvul_0809 nitroreductase
YP_003198071.1	PFAM: Rubrerythrin; KEGG: glo:Glov_1797 rubrerythrin
YP_003198072.1	PFAM: protein of unknown function DUF1611; KEGG: mes:Meso_0034 protein of unknown function DUF1611
YP_003198073.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: tau:Tola_0562 mandelate racemase/muconate lactonizing protein
YP_003198074.1	PFAM: aminotransferase class IV; KEGG: rlg:Rleg_0536 aminotransferase class IV
YP_003198076.1	PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain-containing protein
YP_003198079.1	KEGG: tgr:Tgr7_1681 hypothetical protein
YP_003198080.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gbm:Gbem_3791 antibiotic biosynthesis monooxygenase
YP_003198081.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dal:Dalk_4724 glyoxalase/bleomycin resistance protein/dioxygenase
YP_003198082.1	KEGG: cti:RALTA_B0427 hypothetical protein
YP_003198083.1	PFAM: Radical SAM domain protein; KEGG: dvm:DvMF_2991 radical SAM domain protein
YP_003198084.1	KEGG: sfu:Sfum_3540 hypothetical protein
YP_003198086.1	PFAM: Uncharacterised protein family UPF0324; KEGG: dvm:DvMF_1363 hypothetical protein
YP_003198087.1	KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_003198088.1	PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_33180 response regulator
YP_003198089.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein
YP_003198090.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sat:SYN_01172 Co/Zn/Cd cation transporter
YP_003198091.1	PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dde:Dde_0685 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein
YP_003198092.1	KEGG: dvm:DvMF_0928 hypothetical protein
YP_003198093.1	KEGG: dvm:DvMF_0933 molybdopterin-containing oxidoreductase membrane anchor subunit
YP_003198094.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0932 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003198095.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0931 molybdopterin oxidoreductase
YP_003198096.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: dvm:DvMF_2471 cytoplasmic chaperone TorD family protein
YP_003198097.1	KEGG: dvm:DvMF_0929 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein
YP_003198099.1	SMART: regulatory protein Crp; KEGG: dma:DMR_25770 putative carbon monoxide dehydrogenase CooA protein
YP_003198100.1	KEGG: dma:DMR_25780 putative carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane
YP_003198101.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvm:DvMF_2232 carbon monoxide dehydrogenase accessory protein CooC, putative
YP_003198102.1	PFAM: Catalase related subgroup; Catalase domain protein; KEGG: csa:Csal_0803 catalase
YP_003198103.1	PFAM: beta-lactamase domain protein; KEGG: dat:HRM2_46910 metallo-beta-lactamase family protein
YP_003198104.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; protein of unknown function DUF1365; KEGG: dat:HRM2_48620 cation-efflux family protein
YP_003198105.1	PFAM: FAD dependent oxidoreductase; KEGG: dol:Dole_0350 amine oxidase
YP_003198106.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC1372 hypothetical protein
YP_003198107.1	PFAM: protein of unknown function DUF1295; KEGG: dol:Dole_0352 hypothetical protein
YP_003198108.1	PFAM: Protein of unknown function DUF2237; KEGG: mfa:Mfla_0125 hypothetical protein
YP_003198109.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvm:DvMF_2078 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_003198110.1	PFAM: Patatin; KEGG: tgr:Tgr7_1058 patatin
YP_003198111.1	PFAM: dienelactone hydrolase; KEGG: hch:HCH_02826 dienelactone hydrolase
YP_003198113.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin)
YP_003198114.1	KEGG: sfu:Sfum_2550 hydroxylamine oxidase
YP_003198116.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_46890 hypothetical protein
YP_003198117.1	KEGG: dal:Dalk_4091 hypothetical protein
YP_003198118.1	PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: csa:Csal_1111 peptidase S15
YP_003198119.1	KEGG: sse:Ssed_1941 hypothetical protein
YP_003198120.1	PFAM: Entericidin EcnAB; KEGG: bbr:BB0451 entericidin A anti-toxin precursor
YP_003198121.1	PFAM: metallophosphoesterase; KEGG: hha:Hhal_1710 metallophosphoesterase
YP_003198122.1	KEGG: aeh:Mlg_0827 hypothetical protein
YP_003198123.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0940 phosphohistidine phosphatase, SixA
YP_003198125.1	KEGG: sdn:Sden_2458 hypothetical protein
YP_003198126.1	TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dvm:DvMF_0822 GTP-binding protein TypA
YP_003198127.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2847 alcohol dehydrogenase, class IV
YP_003198128.1	TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dol:Dole_2801 copper-translocating P-type ATPase
YP_003198129.1	KEGG: sfu:Sfum_3594 hypothetical protein
YP_003198130.1	PFAM: NADPH-dependent FMN reductase; KEGG: pca:Pcar_1104 putative NADPH-dependent FMN reductase
YP_003198132.1	PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3
YP_003198133.1	PFAM: protein of unknown function UPF0118; KEGG: hch:HCH_01685 permease
YP_003198134.1	PFAM: Metal-dependent hydrolase HDOD; EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase
YP_003198135.1	KEGG: dvm:DvMF_2564 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; histidine kinase HAMP region domain protein
YP_003198136.1	PFAM: Peptidase M23; KEGG: pha:PSHAa2170 peptidase M23/M37 protein
YP_003198137.1	PFAM: protein of unknown function DUF583; KEGG: mxa:MXAN_7475 hypothetical protein
YP_003198138.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: mxa:MXAN_3334 drug/metabolite exporter family protein
YP_003198139.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hha:Hhal_1647 LysR family transcriptional regulator
YP_003198140.1	KEGG: hha:Hhal_1321 hypothetical protein
YP_003198141.1	PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: dat:HRM2_37520 OmpF
YP_003198142.1	PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dma:DMR_21020 sulfite reductase
YP_003198143.1	KEGG: dma:DMR_35340 iron-sulfur binding protein
YP_003198144.1	PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like
YP_003198145.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family
YP_003198146.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_40620 ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
YP_003198147.1	PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: dde:Dde_3119 hypothetical protein
YP_003198148.1	KEGG: dvu:DVU1130 DNA-binding protein
YP_003198149.1	PFAM: acylphosphatase; KEGG: dma:DMR_44660 putative acylphosphatase
YP_003198150.1	KEGG: dma:DMR_42410 hypothetical protein
YP_003198151.1	PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_0441 iron-sulfur flavoprotein
YP_003198152.1	KEGG: sfu:Sfum_0659 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2
YP_003198153.1	PFAM: protein of unknown function DUF748; KEGG: tmz:Tmz1t_1893 protein of unknown function DUF748
YP_003198154.1	PFAM: UspA domain protein; KEGG: dma:DMR_44380 hypothetical protein
YP_003198155.1	PFAM: metallophosphoesterase; KEGG: gme:Gmet_0034 metallophosphoesterase
YP_003198156.1	TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein
YP_003198157.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_003198158.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_0985 ABC transporter related protein
YP_003198159.1	KEGG: gbm:Gbem_0984 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat
YP_003198160.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU0800 amino acid ABC transporter, periplasmic amino acid-binding protein
YP_003198161.1	KEGG: sfu:Sfum_0324 hypothetical protein
YP_003198162.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative
YP_003198163.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative
YP_003198164.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_003198166.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_003198167.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_003198168.1	PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: dma:DMR_23970 DNA translocase
YP_003198169.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF
YP_003198170.1	PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein
YP_003198171.1	KEGG: dal:Dalk_4628 hypothetical protein
YP_003198172.1	KEGG: ppd:Ppro_3008 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein
YP_003198173.1	PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_02650 hypothetical protein
YP_003198174.1	PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein
YP_003198175.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0240 methyltransferase type 11
YP_003198176.1	PFAM: protein of unknown function DUF255; KEGG: dvm:DvMF_2759 protein of unknown function DUF255
YP_003198177.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU3407 hypothetical protein
YP_003198178.1	PFAM: deoxyhypusine synthase; KEGG: scl:sce5982 hypothetical protein
YP_003198179.1	TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: dal:Dalk_3765 agmatinase
YP_003198180.1	PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex
YP_003198181.1	PFAM: Sporulation domain protein; KEGG: dde:Dde_2296 hypothetical protein
YP_003198182.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_003198183.1	PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase
YP_003198184.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB
YP_003198185.1	KEGG: dde:Dde_2330 hypothetical protein
YP_003198186.1	PFAM: Methyltransferase type 11; KEGG: dde:Dde_2330 hypothetical protein
YP_003198187.1	TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative
YP_003198188.1	PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase
YP_003198189.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dal:Dalk_2348 protein of unknown function DUF523
YP_003198190.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dat:HRM2_43000 hypothetical protein
YP_003198191.1	PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2593 domain of unknown function DUF1731
YP_003198192.1	PFAM: glutamine cyclotransferase; KEGG: dma:DMR_25530 glutamine cyclotransferase family protein
YP_003198194.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis- trans isomerase
YP_003198195.1	PFAM: Rhomboid family protein; KEGG: geo:Geob_1665 rhomboid family protein
YP_003198196.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_003198197.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: dat:HRM2_39870 SmuG
YP_003198198.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase
YP_003198199.1	PFAM: SNARE associated Golgi protein; KEGG: nmu:Nmul_A1523 phospholipase D/transphosphatidylase
YP_003198200.1	KEGG: dvl:Dvul_2210 putative lipoprotein
YP_003198201.1	PFAM: aldo/keto reductase; KEGG: bgl:bglu_1g30170 aldo/keto reductase
YP_003198202.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dma:DMR_34990 glutathione reductase
YP_003198203.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvm:DvMF_0353 diaminopimelate decarboxylase
YP_003198204.1	KEGG: dvl:Dvul_1438 putative lipoprotein
YP_003198205.1	This protein performs the mismatch recognition step during the DNA repair process
YP_003198206.1	KEGG: dvl:Dvul_1436 tetratricopeptide domain- containing protein
YP_003198207.1	KEGG: dde:Dde_1974 hypothetical protein
YP_003198208.1	PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein
YP_003198209.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1257 ABC transporter related
YP_003198210.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0861 polar amino acid ABC transporter, inner membrane subunit
YP_003198211.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_1824 extracellular solute-binding protein
YP_003198212.1	PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: dma:DMR_22030 nucleotidyltransferase
YP_003198213.1	TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dvl:Dvul_1432 tyrosine recombinase XerD
YP_003198214.1	KEGG: sat:SYN_02163 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase (HppK); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK
YP_003198215.1	SMART: TRASH domain protein; KEGG: dma:DMR_21990 hypothetical protein
YP_003198216.1	KEGG: dde:Dde_1070 putative translaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_003198217.1	catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis
YP_003198220.1	KEGG: sde:Sde_2960 cellulose binding, type IV
YP_003198221.1	PFAM: MgtC/SapB transporter; KEGG: sfu:Sfum_3054 MgtC/SapB transporter
YP_003198223.1	KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_003198224.1	KEGG: dat:HRM2_49230 OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_003198225.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1532 binding-protein-dependent transport systems inner membrane component
YP_003198226.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1533 binding-protein-dependent transport systems inner membrane component
YP_003198227.1	PFAM: extracellular solute-binding protein family 5; KEGG: dal:Dalk_1534 extracellular solute-binding protein family 5
YP_003198228.1	KEGG: dma:DMR_30610 hypothetical protein
YP_003198229.1	PFAM: PP-loop domain protein; KEGG: dvm:DvMF_2330 PP-loop domain protein
YP_003198230.1	KEGG: ank:AnaeK_0840 leucyl/phenylalanyl- tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_003198232.1	KEGG: dma:DMR_23720 ATP-dependent Clp protease ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003198233.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dma:DMR_23730 ATP-dependent Clp protease adaptor protein ClpS
YP_003198234.1	PFAM: adenylate cyclase; KEGG: dvm:DvMF_0460 adenylate cyclase
YP_003198235.1	KEGG: amc:MADE_01157 hypothetical protein
YP_003198236.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_003198237.1	KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_003198238.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_003198239.1	TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dma:DMR_18190 L-aspartate oxidase
YP_003198241.1	KEGG: dma:DMR_46020 hypothetical protein
YP_003198242.1	PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase
YP_003198243.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003198244.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_003198245.1	KEGG: dde:Dde_3322 membrane protein-like
YP_003198246.1	PFAM: protein of unknown function DUF45; KEGG: sfu:Sfum_1535 protein of unknown function DUF45
YP_003198247.1	KEGG: dat:HRM2_03970 MltB
YP_003198248.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: dma:DMR_17130 serine acetyltransferase
YP_003198249.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003198250.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dma:DMR_17120 cysteine synthase A
YP_003198252.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_003198253.1	PFAM: shikimate kinase; KEGG: dma:DMR_27440 shikimate kinase II
YP_003198254.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase
YP_003198255.1	TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dde:Dde_1698 GTP-dependent nucleic acid- binding protein EngD
YP_003198256.1	PFAM: DnaJ homologue, subfamily C, member 28; KEGG: dvm:DvMF_2043 hypothetical protein
YP_003198257.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dma:DMR_13690 hypothetical protein
YP_003198258.1	KEGG: dma:DMR_13680 hypothetical protein
YP_003198259.1	TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA(Tyr) deacylase
YP_003198260.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvl:Dvul_1716 putative 6-pyruvoyl tetrahydropterin synthase
YP_003198261.1	KEGG: dvm:DvMF_0130 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_003198262.1	KEGG: dvm:DvMF_0012 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_003198263.1	KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II
YP_003198264.1	KEGG: dma:DMR_39830 5'-nucleotidase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_003198265.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003198266.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_003198267.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvm:DvMF_0603 2-oxoglutarate ferredoxin oxidoreductase subunit alpha
YP_003198268.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1224 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003198269.1	KEGG: dma:DMR_39820 putative nucleic acid-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region
YP_003198270.1	KEGG: dde:Dde_2338 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase
YP_003198271.1	PFAM: glutaredoxin; KEGG: dma:DMR_39790 glutaredoxin
YP_003198272.1	KEGG: sfu:Sfum_0349 hypothetical protein
YP_003198273.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein
YP_003198274.1	TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dma:DMR_39860 glutamyl-tRNA synthetase
YP_003198275.1	TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28
YP_003198276.1	PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein
YP_003198277.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dma:DMR_39930 50S ribosomal protein L32
YP_003198278.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_003198279.1	KEGG: dma:DMR_39950 3-oxoacyl-[acyl-carrier- protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III
YP_003198280.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dma:DMR_39960 3-oxoacyl-[acyl-carrier- protein] reductase
YP_003198281.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein
YP_003198282.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dvm:DvMF_3098 3-oxoacyl-(acyl-carrier- protein) synthase 2
YP_003198283.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_003198284.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dma:DMR_05630 putative dCMP deaminase
YP_003198285.1	KEGG: dde:Dde_2434 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding
YP_003198286.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_003198287.1	TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2- butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4- dihydroxy-2-butanone 4-phosphate synthase
YP_003198288.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_003198289.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB
YP_003198290.1	TIGRFAM: leucyl-tRNA synthetase; KEGG: dde:Dde_2439 leucyl-tRNA synthetase
YP_003198291.1	KEGG: dvm:DvMF_3089 putative lipoprotein
YP_003198292.1	PFAM: DNA polymerase III delta; KEGG: dma:DMR_44680 hypothetical protein
YP_003198293.1	TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dma:DMR_44670 DNA repair protein RadC
YP_003198294.1	KEGG: dma:DMR_44650 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase
YP_003198295.1	PFAM: beta-lactamase domain protein; KEGG: dma:DMR_43120 hypothetical protein
YP_003198296.1	KEGG: dal:Dalk_4092 hypothetical protein
YP_003198298.1	KEGG: cvi:CV_0812 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003198299.1	PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: oca:OCAR_7506 hypothetical protein
YP_003198300.1	PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: tdn:Suden_0432 cupin region
YP_003198301.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_0987 ABC transporter related
YP_003198302.1	PFAM: conserved hypothetical protein; KEGG: bmj:BMULJ_01745 putative ABC transport system permease protein
YP_003198303.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_00672 FOG: CheY-like receiver
YP_003198304.1	PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation
YP_003198305.1	KEGG: pha:PSHAa1211 sensory box/GGDEF protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_003198306.1	PFAM: protein of unknown function DUF1499; KEGG: gsu:GSU2319 hypothetical protein
YP_003198307.1	PFAM: ADP-ribosylation/Crystallin J1; KEGG: net:Neut_2145 ADP-ribosylation/crystallin J1
YP_003198308.1	TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: pca:Pcar_1480 translation initiation factor Sui1
YP_003198309.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003198311.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase
YP_003198312.1	PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: mxa:MXAN_1407 aminotransferase, classes I and II
YP_003198316.1	KEGG: avn:Avin_41440 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_003198317.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01880 putative arsenate reductase
YP_003198318.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dat:HRM2_40940 UbiE5
YP_003198320.1	TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH- dependent FMN reductase; KEGG: noc:Noc_2414 flavoprotein WrbA
YP_003198321.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0454 hemolysin A
YP_003198322.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_003198323.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_003198324.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_003198325.1	TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_0392 CDP-diacylglycerol--serine O- phosphatidyltransferase
YP_003198326.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_003198327.1	TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: dma:DMR_43240 geranylgeranyl reductase
YP_003198328.1	TIGRFAM: siroheme synthase; KEGG: dvm:DvMF_0298 siroheme synthase
YP_003198329.1	PFAM: cytochrome c assembly protein; KEGG: dma:DMR_16430 putative cytochrome c assembly protein
YP_003198330.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_003198331.1	KEGG: dma:DMR_16410 hypothetical protein
YP_003198332.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dma:DMR_16400 tRNA(Ile)-lysidine synthase
YP_003198333.1	KEGG: eca:ECA3961 hypothetical protein
YP_003198334.1	PFAM: branched-chain amino acid transport; KEGG: dvu:DVU0032 hypothetical protein
YP_003198335.1	PFAM: AzlC family protein; KEGG: dps:DP2465 branched chain amino acid ABC transporter permease
YP_003198336.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dde:Dde_0157 GntR family transcriptional regulator
YP_003198337.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system
YP_003198338.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2397 TonB-dependent receptor
YP_003198339.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2396 ABC-type transport system, putative ATPase component
YP_003198340.1	PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 ABC-type transport system, permease component
YP_003198341.1	KEGG: ppd:Ppro_1538 hypothetical protein
YP_003198342.1	KEGG: sfu:Sfum_0275 conserved hypothetical cytosolic protein
YP_003198343.1	KEGG: dat:HRM2_13500 hypothetical protein
YP_003198345.1	PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: glo:Glov_2618 DEAD/DEAH box helicase domain protein
YP_003198346.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ank:AnaeK_1081 GCN5-related N- acetyltransferase
YP_003198347.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_1846 amino acid carrier protein
YP_003198348.1	KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_003198349.1	TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dma:DMR_45640 alanine dehydrogenase
YP_003198350.1	KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; amino acid-binding ACT domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein
YP_003198351.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein
YP_003198352.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aci:ACIAD3340 putative hydrolase
YP_003198353.1	PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1
YP_003198354.1	TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: dma:DMR_43370 peptide chain release factor 3
YP_003198356.1	KEGG: shn:Shewana3_2096 thioredoxin-disulfide reductase
YP_003198357.1	PFAM: SMC domain protein; KEGG: CG3493 gene product from transcript CG3493-RA
YP_003198358.1	KEGG: spq:SPAB_01119 hypothetical protein
YP_003198359.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003198360.1	PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein
YP_003198361.1	KEGG: mca:MCA1673 sensory box protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003198362.1	PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dal:Dalk_3001 pyridine nucleotide-disulphide oxidoreductase dimerisation region
YP_003198363.1	KEGG: tgr:Tgr7_2386 hypothetical protein
YP_003198364.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor
YP_003198365.1	KEGG: dat:HRM2_39510 IstA2
YP_003198366.1	KEGG: oan:Oant_4651 transposase IS116/IS110/IS902 family protein
YP_003198367.1	KEGG: dal:Dalk_2259 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein
YP_003198368.1	KEGG: sat:SYN_00147 putative cytoplasmic protein
YP_003198369.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer
YP_003198370.1	PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pca:Pcar_0524 periplasmic binding transport protein/transglycosylase
YP_003198371.1	PFAM: protein of unknown function DUF554; KEGG: dvm:DvMF_3049 protein of unknown function DUF554
YP_003198372.1	PFAM: protein of unknown function DUF1232; KEGG: pcr:Pcryo_0858 hypothetical protein
YP_003198374.1	KEGG: tbd:Tbd_2634 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; GAF domain protein; PAS domain containing protein
YP_003198375.1	KEGG: similar to transmembrane protein 132E
YP_003198376.1	PFAM: protein of unknown function UPF0061; KEGG: nwi:Nwi_0945 hypothetical protein
YP_003198378.1	KEGG: pin:Ping_1452 RNA-binding S1 domain- containing protein
YP_003198379.1	KEGG: sat:SYN_00670 hypothetical protein
YP_003198380.1	KEGG: hha:Hhal_0210 hypothetical protein
YP_003198381.1	KEGG: hha:Hhal_0209 endoglucanase
YP_003198382.1	PFAM: glycosyl transferase family 2; KEGG: hha:Hhal_0208 cellulose synthase (UDP- forming)
YP_003198383.1	KEGG: hha:Hhal_0207 TPR repeat-containing protein
YP_003198384.1	SMART: Tetratricopeptide repeat; KEGG: hha:Hhal_0206 TPR repeat-containing protein
YP_003198385.1	KEGG: bac:BamMC406_1293 cellulose synthase domain- containing protein
YP_003198386.1	KEGG: dat:HRM2_43520 RsbW
YP_003198387.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kpu:KP1_1977 probable anti-sigma factor antagonist
YP_003198388.1	KEGG: sat:SYN_00230 response regulator receiver domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein
YP_003198390.1	PFAM: TspO/MBR family protein; KEGG: net:Neut_1064 TspO and MBR like proteins
YP_003198392.1	KEGG: hch:HCH_03148 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003198393.1	PFAM: cobalamin B12-binding domain protein; KEGG: sfu:Sfum_3258 cobalamin B12-binding domain protein
YP_003198396.1	KEGG: rle:RL4488 hypothetical protein
YP_003198398.1	KEGG: mms:mma_2523 hypothetical protein
YP_003198401.1	KEGG: dat:HRM2_39510 IstA2
YP_003198402.1	PFAM: helicase domain protein; SMART: DEAD-like helicase; KEGG: dat:HRM2_44520 DEAD/DEAH box helicase:helicase, C-terminal
YP_003198403.1	KEGG: dat:HRM2_44530 hypothetical protein
YP_003198404.1	KEGG: dat:HRM2_44540 hypothetical protein
YP_003198406.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003198407.1	PFAM: type III restriction protein res subunit; helicase domain protein; phosphoribosyl-ATP pyrophosphohydrolase; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sfu:Sfum_1438 type III restriction enzyme, res subunit
YP_003198408.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV2199 tellurite resistance protein- related protein
YP_003198409.1	KEGG: nwi:Nwi_1252 restriction endonuclease
YP_003198410.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG
YP_003198411.1	TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: dvm:DvMF_0348 triose-phosphate isomerase
YP_003198413.1	PFAM: phosphoglycerate kinase; KEGG: gbm:Gbem_2337 phosphoglycerate kinase
YP_003198414.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0347 ribosomal-protein-alanine acetyltransferase
YP_003198415.1	PFAM: NUDIX hydrolase; KEGG: dma:DMR_18290 isopentenyl-diphosphate delta- isomerase family protein
YP_003198416.1	PFAM: inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase
YP_003198417.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dma:DMR_18270 rod shape-determining protein MreB
YP_003198418.1	PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein
YP_003198419.1	KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein
YP_003198420.1	KEGG: dde:Dde_1995 hypothetical protein
YP_003198421.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dvu:DVU1684 glycine cleavage system T protein
YP_003198423.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein
YP_003198424.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_003198425.1	KEGG: hypothetical protein
YP_003198426.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dma:DMR_18220 putative ATPase
YP_003198427.1	PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: sfu:Sfum_1661 peptidase M16C associated domain protein
YP_003198428.1	KEGG: dps:DP0367 hypothetical protein
YP_003198429.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dps:DP0368 hypothetical protein
YP_003198430.1	KEGG: sfu:Sfum_3885 hypothetical protein
YP_003198431.1	KEGG: sfu:Sfum_3886 glycoside hydrolase, family 13 domain protein
YP_003198432.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sfu:Sfum_3887 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_003198434.1	PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase
YP_003198435.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: gme:Gmet_2329 UDP-galactose 4-epimerase
YP_003198436.1	KEGG: dma:DMR_11410 hypothetical protein
YP_003198437.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein
YP_003198438.1	KEGG: dvm:DvMF_3044 hypothetical protein
YP_003198439.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dma:DMR_31770 glycine cleavage system H protein
YP_003198440.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_003198441.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_003198442.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003198443.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dvm:DvMF_2587 maf protein
YP_003198444.1	PFAM: phosphatidylglycerophosphatase A; KEGG: dvl:Dvul_2413 phosphatidylglycerophosphatase A
YP_003198445.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ilo:IL2439 hemolysin III-like protein
YP_003198446.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative
YP_003198447.1	PFAM: WD40 domain protein beta Propeller; KEGG: dde:Dde_3632 TolB protein, putative
YP_003198448.1	TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like
YP_003198449.1	TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvm:DvMF_2363 protein TolR
YP_003198450.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dma:DMR_13890 putative protein TolQ
YP_003198451.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dma:DMR_17210 PHP domain protein
YP_003198452.1	PFAM: protein of unknown function DUF151; KEGG: dma:DMR_17220 hypothetical protein
YP_003198453.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_003198454.1	KEGG: dma:DMR_17280 putative adenylylsulfate kinase
YP_003198455.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_4352 nitrogen-fixing NifU domain protein
YP_003198456.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_003198457.1	KEGG: dvl:Dvul_1499 hypothetical protein
YP_003198458.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component
YP_003198459.1	PFAM: PTS system fructose subfamily IIA component; KEGG: dma:DMR_25830 phosphotransferase system enzyme IIA component
YP_003198460.1	PFAM: conserved hypothetical protein; KEGG: dvm:DvMF_0424 hypothetical protein
YP_003198461.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dma:DMR_25850 putative phosphotransferase system nitrogen regulatory IIA component
YP_003198462.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dma:DMR_25860 sigma 54 modulation protein/ribosomal protein S30EA domain protein
YP_003198463.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN
YP_003198464.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related
YP_003198465.1	PFAM: OstA family protein; KEGG: dvm:DvMF_0429 OstA family protein
YP_003198466.1	PFAM: protein of unknown function DUF1239; KEGG: dde:Dde_1768 hypothetical protein
YP_003198467.1	TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC
YP_003198468.1	TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dvm:DvMF_0432 2-dehydro-3- deoxyphosphooctonate aldolase
YP_003198469.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_003198470.1	KEGG: dds:Ddes_0976 phosphoribosylformylglycinamidine synthase
YP_003198471.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase
YP_003198472.1	PFAM: integrase family protein; KEGG: lpc:LPC_0202 integrase
YP_003198473.1	PFAM: Prophage CP4-57 regulatory; KEGG: gbm:Gbem_3477 phage transcriptional regulator, AlpA
YP_003198474.1	KEGG: nwi:Nwi_1258 hypothetical protein
YP_003198476.1	KEGG: pne:Pnec_1608 single-strand binding protein
YP_003198478.1	KEGG: sat:SYN_00492 putative cytoplasmic protein
YP_003198479.1	KEGG: dol:Dole_2708 hypothetical protein
YP_003198480.1	KEGG: elf:LF82_p102 hypothetical protein
YP_003198481.1	SMART: AAA ATPase; KEGG: abm:ABSDF2510 putative bacteriophage protein
YP_003198482.1	KEGG: sat:SYN_03173 transposase
YP_003198484.1	KEGG: tgr:Tgr7_2442 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated helicase Cas3, Anaes-subtype; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase
YP_003198485.1	KEGG: tgr:Tgr7_2441 hypothetical protein
YP_003198486.1	PFAM: CRISPR-associated protein GSU0053; KEGG: tgr:Tgr7_2440 hypothetical protein
YP_003198487.1	KEGG: tgr:Tgr7_2439 hypothetical protein
YP_003198489.1	PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease
YP_003198492.1	KEGG: neu:NE0392 hypothetical protein
YP_003198493.1	PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3021 nitroreductase family protein
YP_003198494.1	KEGG: bpe:BP2183 hypothetical protein
YP_003198495.1	KEGG: gur:Gura_0766 tetratricopeptide TPR_4
YP_003198497.1	KEGG: sat:SYN_03033 putative cytoplasmic protein
YP_003198498.1	PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: ppd:Ppro_1133 desulfoferrodoxin
YP_003198499.1	PFAM: Dissimilatory sulfite reductase D; KEGG: dat:HRM2_42380 DsrD
YP_003198500.1	KEGG: aeh:Mlg_1164 hypothetical protein
YP_003198501.1	PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0310 CBS
YP_003198502.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003198503.1	PFAM: protein of unknown function DUF362; KEGG: dvm:DvMF_2714 protein of unknown function DUF362
YP_003198504.1	KEGG: dde:Dde_3125 hypothetical protein
YP_003198505.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dma:DMR_38640 Crp family transcriptional regulator
YP_003198506.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_0940 rubrerythrin
YP_003198507.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_6457 ABC transporter ATP-binding protein
YP_003198508.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3788 binding-protein-dependent transport systems inner membrane component
YP_003198509.1	KEGG: pfo:Pfl01_4931 putative sulfonate/nitrate transport system substrate-binding protein
YP_003198510.1	KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein
YP_003198511.1	KEGG: sfu:Sfum_3174 hypothetical protein
YP_003198512.1	KEGG: gsu:GSU0472 hypothetical protein
YP_003198513.1	KEGG: dat:HRM2_48580 hypothetical protein
YP_003198514.1	PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein
YP_003198515.1	KEGG: dde:Dde_2152 hypothetical protein
YP_003198516.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like
YP_003198517.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dal:Dalk_3682 MotA/TolQ/ExbB proton channel
YP_003198518.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2)
YP_003198519.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_1461 TonB family protein
YP_003198520.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dde:Dde_0435 glycerophosphoryl diester phosphodiesterase family protein
YP_003198521.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: sat:SYN_01404 general secretion pathway protein E
YP_003198522.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_003198523.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_003198524.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dvm:DvMF_0153 acetolactate synthase, large subunit, biosynthetic type
YP_003198525.1	KEGG: dma:DMR_21820 hypothetical protein
YP_003198526.1	PFAM: protein of unknown function DUF167; KEGG: dvl:Dvul_1694 hypothetical protein
YP_003198527.1	PFAM: protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT
YP_003198528.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_21780 haloacid dehalogenase-like hydrolase family protein
YP_003198529.1	PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0870 acyl-CoA synthetase
YP_003198530.1	PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_0869 transcriptional regulator, XRE family
YP_003198531.1	KEGG: dvl:Dvul_1698 hypothetical protein
YP_003198533.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_21750 sec-independent protein translocase protein TatA/E
YP_003198534.1	KEGG: dde:Dde_2178 putative lipoprotein
YP_003198535.1	KEGG: dde:Dde_2180 hypothetical protein
YP_003198536.1	KEGG: dde:Dde_1784 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_003198537.1	KEGG: dvm:DvMF_0173 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase
YP_003198538.1	KEGG: dvm:DvMF_0172 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative
YP_003198539.1	PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: sat:SYN_00166 metallo-beta-lactamase protein
YP_003198540.1	SMART: GGDEF domain containing protein; KEGG: mxa:MXAN_5791 response regulator/GGDEF domain- containing protein
YP_003198541.1	PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dvm:DvMF_3162 Smr protein/MutS2
YP_003198542.1	KEGG: dde:Dde_0560 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_003198543.1	PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA- specific-like
YP_003198544.1	PFAM: protein of unknown function DUF814; KEGG: scl:sce0899 putative fibronectin-binding protein-like protein A
YP_003198545.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_003198546.1	PFAM: protein of unknown function DUF178; KEGG: dma:DMR_16380 hypothetical protein
YP_003198547.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_003198548.1	KEGG: dma:DMR_20850 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit
YP_003198549.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003198550.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO
YP_003198551.1	KEGG: dde:Dde_2036 XRE family transcriptional regulator
YP_003198552.1	PFAM: SurA domain; PpiC-type peptidyl-prolyl cis- trans isomerase; KEGG: dma:DMR_20800 putative peptidyl-prolyl cis- trans isomerase
YP_003198553.1	KEGG: dma:DMR_20780 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_003198554.1	KEGG: dvm:DvMF_0283 hypothetical protein
YP_003198555.1	KEGG: dma:DMR_27530 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase
YP_003198556.1	KEGG: dat:HRM2_27650 PilY1
YP_003198558.1	KEGG: dat:HRM2_27660 PilX
YP_003198559.1	KEGG: sat:SYN_01760 hypothetical protein
YP_003198560.1	KEGG: shn:Shewana3_3131 prepilin-type cleavage/methylation-like protein
YP_003198562.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_003198563.1	TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: dvm:DvMF_0280 holo-acyl-carrier-protein synthase
YP_003198564.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: dma:DMR_17920 hypothetical protein
YP_003198565.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein
YP_003198566.1	PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein
YP_003198567.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_003198568.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: dma:DMR_17880 2-isopropylmalate synthase/homocitrate synthase family protein
YP_003198569.1	PFAM: beta-lactamase domain protein; KEGG: tau:Tola_0320 beta-lactamase domain protein
YP_003198570.1	KEGG: dvl:Dvul_1336 putative carboxylesterase
YP_003198571.1	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase
YP_003198572.1	PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2718 metallophosphoesterase
YP_003198573.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: dma:DMR_17090 protein CrcB homolog
YP_003198574.1	PFAM: CI repressor; KEGG: dvl:Dvul_1413 putative phage repressor
YP_003198575.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1234 PfpI family intracellular peptidase
YP_003198576.1	KEGG: dma:DMR_03410 hypothetical protein
YP_003198577.1	KEGG: dde:Dde_0060 hypothetical protein
YP_003198578.1	KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_003198579.1	KEGG: hypothetical protein LOC687931
YP_003198581.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003198582.1	KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein
YP_003198584.1	PFAM: Nucleotidyl transferase; KEGG: dma:DMR_25690 UTP--glucose-1-phosphate uridylyltransferase
YP_003198585.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_003198586.1	PFAM: YbbR family protein; KEGG: dma:DMR_25710 hypothetical protein
YP_003198587.1	PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein
YP_003198588.1	KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_003198589.1	KEGG: dma:DMR_25740 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003198590.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_003198591.1	KEGG: dde:Dde_2531 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase
YP_003198593.1	TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dvm:DvMF_0046 ornithine carbamoyltransferase
YP_003198594.1	PFAM: protein of unknown function UPF0054; KEGG: dma:DMR_28860 hypothetical protein
YP_003198595.1	PFAM: PhoH family protein; K Homology, type 1, subgroup; KEGG: dma:DMR_28840 PhoH-like protein
YP_003198596.1	KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003198597.1	PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dma:DMR_28830 hypothetical protein
YP_003198598.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family
YP_003198599.1	PFAM: Methyltransferase-16, putative; Methyltransferase type 12; KEGG: dvl:Dvul_1029 methyltransferase small
YP_003198600.1	PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_15900 hypothetical protein
YP_003198601.1	KEGG: dma:DMR_15890 sulfite reductase gamma subunit; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein
YP_003198602.1	KEGG: dvm:DvMF_0872 hypothetical protein
YP_003198603.1	PFAM: glycosyl transferase family 2; KEGG: dol:Dole_0985 glycosyl transferase family protein
YP_003198604.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein
YP_003198605.1	PFAM: ApbE family lipoprotein; KEGG: dma:DMR_30660 hypothetical protein
YP_003198606.1	TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: dat:HRM2_18050 ThyX
YP_003198607.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_003198608.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_003198609.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_003198610.1	PFAM: protein of unknown function DUF28; KEGG: dvu:DVU2259 hypothetical protein
YP_003198611.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dma:DMR_30870 ribosomal RNA large subunit methyltransferase J
YP_003198612.1	PFAM: Transketolase domain protein; Transketolase central region; KEGG: MGC69114; transketolase; K00615 transketolase
YP_003198613.1	TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dol:Dole_2685 TraB family protein
YP_003198614.1	PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sat:SYN_00178 superfamily II DNA/RNA helicase
YP_003198615.1	PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1
YP_003198616.1	KEGG: dvm:DvMF_0606 hypothetical protein
YP_003198617.1	PFAM: (Uracil-5)-methyltransferase; KEGG: psa:PST_2670 23S rRNA 5-methyluridine methyltransferase
YP_003198618.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase
YP_003198619.1	PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_4140 hypothetical protein
YP_003198620.1	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase
YP_003198621.1	PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase
YP_003198622.1	PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit
YP_003198623.1	KEGG: dma:DMR_24350 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type
YP_003198624.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_003198626.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_003198627.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dvm:DvMF_0181 phosphoadenosine phosphosulfate reductase
YP_003198628.1	KEGG: vha:VIBHAR_02897 hypothetical protein
YP_003198629.1	PFAM: sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter
YP_003198630.1	PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: dvl:Dvul_2138 5-enolpyruvylshikimate-3- phosphate synthase-like protein
YP_003198631.1	KEGG: dvm:DvMF_2890 hypothetical protein
YP_003198632.1	PFAM: histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; histidine kinase A domain protein; KEGG: sat:SYN_01077 sensor proteinluxq
YP_003198633.1	Catalyzes the conversion of citrate to isocitrate
YP_003198634.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein
YP_003198635.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase
YP_003198636.1	PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0081 beta-lactamase domain- containing protein
YP_003198637.1	TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sat:SYN_02732 protein HipA
YP_003198638.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rhi:NGR234_237 Y4mF
YP_003198639.1	KEGG: lip:LI0701 nuclease subunit of the excinuclease complex; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1
YP_003198640.1	PFAM: Peptidase M23; KEGG: dma:DMR_28080 peptidase M23B family protein
YP_003198641.1	PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p
YP_003198642.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase
YP_003198643.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: dma:DMR_20120 hypothetical protein
YP_003198644.1	TIGRFAM: redox-active disulfide protein 2; KEGG: dal:Dalk_4732 redox-active disulfide protein 2
YP_003198645.1	PFAM: permease; KEGG: dal:Dalk_4734 permease
YP_003198646.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dps:DP0944 ArsR-family transcription regulator
YP_003198647.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_41050 hypothetical membrane protein
YP_003198650.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein
YP_003198651.1	PFAM: protein of unknown function DUF498; KEGG: 1810020D17Rik; RIKEN cDNA 1810020D17 gene ; K09008 hypothetical protein
YP_003198652.1	PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1696 radical SAM domain protein
YP_003198653.1	PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein
YP_003198654.1	PFAM: Patatin; KEGG: she:Shewmr4_3733 patatin
YP_003198655.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dma:DMR_01740 putative potassium transport systems NAD-binding component
YP_003198656.1	PFAM: cation transporter; KEGG: dma:DMR_01730 putative potassium uptake system membrane components
YP_003198657.1	PFAM: sodium/hydrogen exchanger; KEGG: pca:Pcar_0178 Na+/H+ antiporter
YP_003198658.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; UspA domain protein; KEGG: pca:Pcar_0177 K+ transport systems, NAD- binding component
YP_003198659.1	KEGG: mmw:Mmwyl1_1898 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein
YP_003198661.1	PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein
YP_003198662.1	PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3
YP_003198663.1	SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein
YP_003198664.1	PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF
YP_003198665.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: ppr:PBPRA3092 hypothetical protein
YP_003198666.1	PFAM: Protein of unknown function DUF2078, membrane; KEGG: sat:SYN_02429 hypothetical protein
YP_003198667.1	KEGG: GG21082 gene product from transcript GG21082- RA
YP_003198669.1	PFAM: molybdopterin binding domain; KEGG: dma:DMR_05970 molybdopterin binding domain protein
YP_003198670.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dat:HRM2_07080 Mop1
YP_003198671.1	KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003198672.1	KEGG: dds:Ddes_1821 hypothetical protein
YP_003198673.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 SAM-dependent methyltransferase
YP_003198674.1	PFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_1533 hypothetical protein
YP_003198675.1	PFAM: Radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB
YP_003198676.1	KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein
YP_003198677.1	KEGG: gur:Gura_1005 hypothetical protein
YP_003198678.1	KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003198679.1	PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase
YP_003198680.1	KEGG: dol:Dole_0215 hypothetical protein
YP_003198681.1	KEGG: dat:HRM2_01680 putative molybdenum ABC-type transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_003198682.1	TIGRFAM: NifC-like ABC-type porter; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01690 putative molybdenum ABC-type transporter, permease subunit
YP_003198683.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: dat:HRM2_01700 ModA3
YP_003198685.1	PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: pat:Patl_2797 deoxyribodipyrimidine photolyase-related protein
YP_003198686.1	KEGG: pin:Ping_0486 hypothetical protein
YP_003198687.1	KEGG: cbc:CbuK_0049 ATP synthase B chain
YP_003198689.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_003198690.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_003198691.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_003198692.1	PFAM: V-type ATPase 116 kDa subunit; KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase
YP_003198693.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_003198694.1	KEGG: maq:Maqu_1646 hypothetical protein
YP_003198695.1	KEGG: dol:Dole_2802 hypothetical protein
YP_003198696.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2803 protein of unknown function DUF395 YeeE/YedE
YP_003198697.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2804 hypothetical protein
YP_003198698.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dol:Dole_2805 rhodanese domain-containing protein
YP_003198699.1	KEGG: pca:Pcar_0911 sensory box histidine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003198700.1	PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_1854 major facilitator superfamily permease/BtlA-like
YP_003198701.1	PFAM: protein of unknown function UPF0066; KEGG: dol:Dole_1581 hypothetical protein
YP_003198702.1	PFAM: SNARE associated Golgi protein; KEGG: dol:Dole_2781 SNARE associated Golgi protein
YP_003198703.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_0703 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003198704.1	KEGG: dal:Dalk_0704 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase
YP_003198705.1	KEGG: dps:DP0122 17 kDa surface antigen
YP_003198706.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dal:Dalk_0291 methyltransferase type 11
YP_003198707.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_2217 TetR family transcriptional regulator
YP_003198708.1	KEGG: dde:Dde_1338 hypothetical protein
YP_003198709.1	PFAM: Na+/solute symporter; KEGG: dde:Dde_1337 sodium/proline symporter (proline permease)
YP_003198710.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1342 two component transcriptional regulator, winged helix family
YP_003198711.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_1335 integral membrane sensor signal transduction histidine kinase
YP_003198713.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD
YP_003198714.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0146 putative glycine betaine/L- proline ABC transporter, solute-binding protein
YP_003198715.1	PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dol:Dole_0855 sodium/hydrogen exchanger
YP_003198716.1	KEGG: pca:Pcar_0926 sensory box protein
YP_003198718.1	PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dma:DMR_30690 curved DNA-binding protein
YP_003198719.1	KEGG: dvm:DvMF_0568 hypothetical protein
YP_003198720.1	KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase
YP_003198721.1	PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein
YP_003198723.1	KEGG: dol:Dole_2162 alkyl hydroperoxide reductase
YP_003198724.1	KEGG: dol:Dole_2161 peroxiredoxin-like protein
YP_003198725.1	PFAM: cyclase family protein; KEGG: dal:Dalk_2911 cyclase family protein
YP_003198726.1	KEGG: dvl:Dvul_1334 hypothetical protein
YP_003198727.1	catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate
YP_003198728.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_003198729.1	PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_1807 CBS
YP_003198730.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dma:DMR_26090 apolipoprotein N- acyltransferase
YP_003198731.1	KEGG: GH18944 gene product from transcript GH18944- RA
YP_003198732.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein
YP_003198734.1	KEGG: dma:DMR_26140 hypothetical protein
YP_003198735.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_003198736.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_003198737.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_003198738.1	TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: dat:HRM2_40650 SfsA
YP_003198739.1	TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_3170 heavy metal translocating P- type ATPase
YP_003198740.1	KEGG: dma:DMR_38440 hypothetical protein; Contains selenocysteine
YP_003198741.1	KEGG: dma:DMR_38440 hypothetical protein
YP_003198742.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein
YP_003198743.1	PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4398 peptidoglycan-binding LysM
YP_003198744.1	KEGG: dde:Dde_0121 hypothetical protein
YP_003198745.1	KEGG: dde:Dde_1011 hypothetical protein
YP_003198746.1	KEGG: bgl:bglu_1g23150 auxin-binding protein
YP_003198747.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mll1163 methylamine utilization protein
YP_003198748.1	KEGG: dma:DMR_34450 hypothetical protein
YP_003198749.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: dma:DMR_28110 putative tRNA nucleotidyltransferase
YP_003198750.1	KEGG: dal:Dalk_2791 hypothetical protein
YP_003198751.1	PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dma:DMR_22330 hypothetical protein
YP_003198753.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix
YP_003198754.1	KEGG: glo:Glov_1134 conserved hypothetical cytosolic protein
YP_003198756.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2052 sigma-70 factor
YP_003198757.1	KEGG: dma:DMR_20690 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein
YP_003198759.1	KEGG: dvu:DVU1790 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein
YP_003198760.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_003198761.1	KEGG: dvl:Dvul_1365 hypothetical protein
YP_003198762.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dma:DMR_20640 HU_IHF family transcriptional regulator
YP_003198763.1	KEGG: dvm:DvMF_0501 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase
YP_003198764.1	PFAM: glycosyl transferase family 20; KEGG: sat:SYN_02628 alpha,alpha-trehalose-phosphate synthase (UDP-forming)
YP_003198765.1	TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: dde:Dde_2061 trehalose-phosphatase
YP_003198766.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_003198767.1	KEGG: dde:Dde_2064 hypothetical protein
YP_003198768.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2065 putative lipoprotein
YP_003198769.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase
YP_003198770.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dma:DMR_21650 thioredoxin
YP_003198771.1	KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease
YP_003198772.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_003198773.1	KEGG: dma:DMR_21620 hypothetical protein
YP_003198774.1	KEGG: dvm:DvMF_0406 tetratricopeptide TPR_4
YP_003198775.1	PFAM: Septum formation initiator; KEGG: dds:Ddes_1194 septum formation initiator
YP_003198776.1	KEGG: dde:Dde_2073 hypothetical protein
YP_003198777.1	KEGG: dat:HRM2_05010 hypothetical protein
YP_003198778.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sat:SYN_00126 pili retraction protein
YP_003198779.1	KEGG: dal:Dalk_3302 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_003198780.1	TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase
YP_003198781.1	PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_1036 lytic transglycosylase catalytic
YP_003198782.1	PFAM: ATPase-like, ParA/MinD; KEGG: dvl:Dvul_1315 hypothetical protein
YP_003198783.1	PFAM: protein of unknown function DUF368; KEGG: dol:Dole_2007 hypothetical protein
YP_003198784.1	KEGG: dvu:DVU1849 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase
YP_003198785.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_2078 CBS
YP_003198786.1	TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dat:HRM2_11670 HyaD1
YP_003198788.1	KEGG: psb:Psyr_4480 TonB, C-terminal
YP_003198789.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_3385 ABC transporter, ATPase subunit
YP_003198790.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase
YP_003198791.1	PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; oxidoreductase domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase
YP_003198792.1	KEGG: dma:DMR_28980 2,3-bisphosphoglycerate- independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein
YP_003198793.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase
YP_003198794.1	PFAM: amidohydrolase 2; TatD-related deoxyribonuclease; KEGG: dma:DMR_28960 amidohydrolase 2 family protein
YP_003198795.1	KEGG: dds:Ddes_1271 hypothetical protein
YP_003198796.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dat:HRM2_44930 YwkC
YP_003198797.1	PFAM: Radical SAM domain protein; KEGG: dma:DMR_45420 hypothetical protein
YP_003198798.1	KEGG: dma:DMR_45410 hypothetical protein
YP_003198799.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_003198800.1	KEGG: dma:DMR_37970 acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_003198801.1	PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: dma:DMR_37960 hypothetical protein
YP_003198802.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase
YP_003198803.1	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dvl:Dvul_2108 30S ribosomal protein S2
YP_003198804.1	TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dvl:Dvul_2109 elongation factor Ts
YP_003198805.1	KEGG: dvl:Dvul_2111 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_003198806.1	TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor
YP_003198807.1	KEGG: dvu:DVU0869 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_003198808.1	PFAM: phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase
YP_003198809.1	KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein
YP_003198810.1	KEGG: dde:Dde_1122 peptidase RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein
YP_003198811.1	PFAM: peptidase M22 glycoprotease; KEGG: dvu:DVU0864 glycoprotease family protein, putative
YP_003198812.1	PFAM: iron dependent repressor; regulatory protein MarR; SMART: iron dependent repressor; KEGG: sfu:Sfum_3768 iron (metal) dependent repressor, DtxR family
YP_003198813.1	TIGRFAM: MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; KEGG: dvu:DVU0859 hypothetical protein
YP_003198814.1	KEGG: dvm:DvMF_2907 hypothetical protein
YP_003198815.1	PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein
YP_003198816.1	PFAM: delta-aminolevulinic acid dehydratase; KEGG: dma:DMR_04460 delta-aminolevulinic acid dehydratase
YP_003198817.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_04480 hypothetical protein
YP_003198818.1	SMART: Transcription regulator, AsnC-type; KEGG: dde:Dde_2578 AsnC family transcriptional regulator
YP_003198819.1	KEGG: dma:DMR_38890 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
YP_003198820.1	PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_43700 AsnC family transcriptional regulator
YP_003198821.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dvl:Dvul_0070 putative delta-1-pyrroline-5- carboxylate dehydrogenase
YP_003198823.1	TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pla:Plav_3085 sodium/proline symporter
YP_003198824.1	KEGG: dma:DMR_05440 hypothetical protein
YP_003198825.1	KEGG: dma:DMR_05430 quinone-interacting membrane- bound oxidoreductase complex subunit C
YP_003198826.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0849 heterodisulfide reductase, iron- sulfur-binding subunit, putative
YP_003198827.1	KEGG: dma:DMR_05410 quinone-interacting membrane- bound oxidoreductase complex subunit A
YP_003198828.1	catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite
YP_003198829.1	TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2137 adenylylsulfate reductase, beta subunit
YP_003198830.1	KEGG: dma:DMR_39470 putative sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase
YP_003198831.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dal:Dalk_0381 potassium uptake protein, TrkH family
YP_003198832.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_003198833.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR
YP_003198834.1	KEGG: sfu:Sfum_0244 hypothetical protein
YP_003198835.1	PFAM: ABC-1 domain protein; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative
YP_003198836.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein
YP_003198837.1	PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase
YP_003198838.1	PFAM: VanZ family protein; KEGG: reh:H16_A1479 hypothetical protein
YP_003198839.1	TIGRFAM: probable DNA repair protein; KEGG: noc:Noc_0987 hypothetical protein
YP_003198840.1	TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1
YP_003198841.1	PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein
YP_003198842.1	PFAM: NUDIX hydrolase; KEGG: ecq:ECED1_1012 putative NUDIX hydrolase
YP_003198843.1	KEGG: dma:DMR_33400 hypothetical protein
YP_003198844.1	KEGG: tcx:Tcr_1766 hypothetical protein
YP_003198845.1	PFAM: PhoU family protein; aminoglycoside phosphotransferase; KEGG: dma:DMR_18080 hypothetical protein
YP_003198846.1	PFAM: RimK domain protein ATP-grasp; KEGG: dma:DMR_18070 hypothetical protein
YP_003198847.1	KEGG: dma:DMR_18060 hypothetical protein
YP_003198848.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein
YP_003198849.1	KEGG: dvm:DvMF_2199 hypothetical protein
YP_003198850.1	KEGG: dol:Dole_2867 hypothetical protein
YP_003198851.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain- containing protein
YP_003198852.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dde:Dde_2343 diguanylate phosphodiesterase
YP_003198853.1	KEGG: dvm:DvMF_1024 hypothetical protein
YP_003198854.1	KEGG: dvl:Dvul_1789 hypothetical protein
YP_003198855.1	KEGG: dvl:Dvul_1790 hypothetical protein
YP_003198856.1	PFAM: type II and III secretion system protein; KEGG: dal:Dalk_4815 type II and III secretion system protein
YP_003198857.1	PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4816 type II secretory pathway component ExeA (predicted ATPase)-like protein
YP_003198858.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dvm:DvMF_1028 type II secretion system protein E
YP_003198859.1	PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_1029 type II secretion system protein
YP_003198860.1	KEGG: GM23831 gene product from transcript GM23831- RA
YP_003198861.1	KEGG: aha:AHA_0398 putative msha biogenesis protein msho
YP_003198863.1	KEGG: hha:Hhal_0319 hypothetical protein
YP_003198864.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein
YP_003198865.1	KEGG: rfr:Rfer_3364 hypothetical protein
YP_003198866.1	KEGG: dvm:DvMF_0918 hypothetical protein
YP_003198867.1	KEGG: dde:Dde_2592 hypothetical protein
YP_003198868.1	KEGG: dvl:Dvul_2811 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_003198869.1	PFAM: UvrD/REP helicase; KEGG: dvu:DVU0156 ATP-dependent DNA helicase UvrD
YP_003198870.1	KEGG: pla:Plav_0995 TonB family protein
YP_003198871.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase
YP_003198872.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_003198873.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_003198874.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative
YP_003198875.1	PFAM: FAD linked oxidase domain protein; KEGG: dvu:DVU0827 glycolate oxidase, subunit GlcD, putative
YP_003198876.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_003198877.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: dma:DMR_07500 phosphoenolpyruvate-protein phosphotransferase
YP_003198878.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dvl:Dvul_2151 phosphotransferase system, phosphocarrier protein HPr
YP_003198879.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dvm:DvMF_2879 PTS system mannose/fructose/sorbose family IID component
YP_003198880.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase
YP_003198881.1	PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein
YP_003198882.1	PFAM: ribonuclease HII/HIII; KEGG: dma:DMR_34650 ribonuclease HII
YP_003198883.1	TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: dvl:Dvul_2146 50S ribosomal protein L19
YP_003198884.1	KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase
YP_003198885.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM
YP_003198886.1	KEGG: dma:DMR_34690 hypothetical protein
YP_003198887.1	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16
YP_003198888.1	KEGG: dma:DMR_34710 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_003198889.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_003198890.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2763 ATPase
YP_003198891.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein
YP_003198892.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0751 His/Glu/Gln/Arg/opine ABC transporter permease
YP_003198893.1	PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like
YP_003198894.1	PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1061 glycosyl transferase, group 1 family protein
YP_003198895.1	TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cjr:CJE0010 competence protein ComEA
YP_003198896.1	in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis
YP_003198897.1	PFAM: ferredoxin; KEGG: dma:DMR_17970 hypothetical protein
YP_003198898.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dma:DMR_20900 selenide, water dikinase
YP_003198899.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dma:DMR_12480 LysR family transcriptional regulator
YP_003198900.1	TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dvl:Dvul_1738 50S ribosomal protein L17
YP_003198901.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_003198902.1	KEGG: dds:Ddes_0685 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein
YP_003198903.1	TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; KEGG: dvl:Dvul_1741 30S ribosomal protein S11
YP_003198904.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_003198905.1	TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: dvl:Dvul_1743 50S ribosomal protein L36
YP_003198906.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I
YP_003198907.1	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dde:Dde_2237 preprotein translocase subunit SecY
YP_003198908.1	late assembly protein
YP_003198909.1	TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: dde:Dde_2239 50S ribosomal protein L30
YP_003198910.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_003198911.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dma:DMR_12360 50S ribosomal protein L18
YP_003198912.1	TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; KEGG: dvm:DvMF_0094 50S ribosomal protein L6
YP_003198913.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_003198914.1	PFAM: ribosomal protein S14; KEGG: dma:DMR_12330 30S ribosomal protein S14
YP_003198915.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_003198916.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_003198917.1	TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dde:Dde_2247 50S ribosomal protein L14
YP_003198918.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_003198919.1	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dvl:Dvul_1757 50S ribosomal protein L29
YP_003198920.1	TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; KEGG: lip:LI0967 50S ribosomal protein L16
YP_003198921.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_003198922.1	TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dde:Dde_2252 50S ribosomal protein L22
YP_003198923.1	TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: dde:Dde_2253 SSU ribosomal protein S19P
YP_003198924.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_003198925.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_003198926.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_003198927.1	TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; KEGG: dvm:DvMF_0079 50S ribosomal protein L3
YP_003198928.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_003198929.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu
YP_003198930.1	TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dma:DMR_12170 elongation factor G
YP_003198931.1	TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: dvm:DvMF_0076 30S ribosomal protein S7
YP_003198932.1	TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvl:Dvul_1770 30S ribosomal protein S12
YP_003198933.1	KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein
YP_003198934.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_003198935.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dma:DMR_31170 50S ribosomal protein L7/L12
YP_003198936.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_003198937.1	TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: dvl:Dvul_0442 50S ribosomal protein L1
YP_003198938.1	KEGG: dvm:DvMF_1451 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11
YP_003198939.1	KEGG: dvm:DvMF_1450 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein
YP_003198940.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dde:Dde_2990 preprotein translocase subunit SecE
YP_003198941.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_003198942.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu
YP_003198943.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_003198944.1	KEGG: dma:DMR_31270 protein methyltransferase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small
YP_003198945.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dma:DMR_31280 peptide chain release factor 1
YP_003198946.1	TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: dvm:DvMF_1442 50S ribosomal protein L31
YP_003198947.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_003198948.1	TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit
YP_003198949.1	TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dma:DMR_42160 ATP synthase subunit A
YP_003198950.1	PFAM: ATP synthase I; KEGG: dma:DMR_42150 hypothetical membrane protein
YP_003198951.1	KEGG: dvl:Dvul_2064 ATP synthase protein I
YP_003198952.1	KEGG: dma:DMR_45820 hypothetical protein
YP_003198953.1	KEGG: pca:Pcar_1039 LysM domain-containing protein
YP_003198954.1	PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein
YP_003198955.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dal:Dalk_1983 UBA/ThiF-type NAD/FAD binding protein
YP_003198956.1	TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: dat:HRM2_18340 GlpK
YP_003198957.1	KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component
YP_003198958.1	PFAM: Protein of unknown function DUF2160, transmembrane; KEGG: csa:Csal_2090 hypothetical protein
YP_003198959.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3980 binding-protein-dependent transport systems inner membrane component
YP_003198960.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3172 ABC sugar (glycerol) transporter binding protein inner membrane protein
YP_003198961.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_0379 ABC transporter related
YP_003198962.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_1379 ABC transporter related
YP_003198963.1	sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters
YP_003198964.1	TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dat:HRM2_42310 GlpA3
YP_003198965.1	KEGG: dma:DMR_30760 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_003198966.1	KEGG: dvm:DvMF_3006 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase
YP_003198967.1	PFAM: conserved hypothetical protein; KEGG: pca:Pcar_0641 hypothetical protein
YP_003198968.1	PFAM: protein of unknown function DUF606; KEGG: dvm:DvMF_2381 protein of unknown function DUF606
YP_003198969.1	PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dvl:Dvul_0536 hypothetical protein
YP_003198970.1	PFAM: protein of unknown function DUF62; KEGG: dvm:DvMF_1391 protein of unknown function DUF62
YP_003198971.1	PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3072 hypothetical protein
YP_003198972.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dvl:Dvul_0382 molybdenum cofactor synthesis domain-containing protein
YP_003198973.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_003198974.1	TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN, putative
YP_003198975.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: esa:ESA_01859 hypothetical protein
YP_003198976.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_003198978.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC3515 cellulose synthase subunit C
YP_003198979.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein
YP_003198980.1	PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0412 hypothetical protein
YP_003198981.1	KEGG: dvm:DvMF_1765 hypothetical protein
YP_003198982.1	PFAM: Protein of unknown function DUF2064; aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein
YP_003198983.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dde:Dde_0213 ATPase
YP_003198984.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute- binding protein
YP_003198985.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative
YP_003198986.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative
YP_003198987.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2
YP_003198988.1	PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121
YP_003198989.1	KEGG: hch:HCH_03963 hypothetical protein
YP_003198990.1	PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00036 glycosyltransferase
YP_003198991.1	KEGG: dol:Dole_2781 SNARE associated Golgi protein
YP_003198992.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A
YP_003198993.1	PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: dvm:DvMF_1776 GCN5-related N- acetyltransferase
YP_003198994.1	TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_0401 acetate--CoA ligase
YP_003198995.1	KEGG: gsu:GSU1496 pilin domain-containing protein
YP_003198996.1	PFAM: protein of unknown function UPF0005; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005
YP_003198997.1	KEGG: dvm:DvMF_0926 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_003198998.1	KEGG: dma:DMR_37770 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein
YP_003198999.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_003199000.1	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dma:DMR_14810 hypothetical protein
YP_003199001.1	TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein; KEGG: dma:DMR_14800 inner membrane protein OxaA
YP_003199002.1	PFAM: protein of unknown function DUF37; KEGG: ank:AnaeK_4496 protein of unknown function DUF37
YP_003199003.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dvm:DvMF_0890 ribonuclease P protein component
YP_003199004.1	TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: ngk:NGK_2661 50S ribosomal protein L34
YP_003199005.1	PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related
YP_003199006.1	KEGG: pca:Pcar_1272 hypothetical protein
YP_003199007.1	PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1174 glycosyl transferase family protein
YP_003199009.1	PFAM: periplasmic binding protein; KEGG: dde:Dde_1622 iron transport periplasmic binding protein
YP_003199010.1	PFAM: transport system permease protein; KEGG: dde:Dde_1623 iron(III) dicitrate transport system permease protein
YP_003199011.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1624 ATPase
YP_003199012.1	PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dde:Dde_1625 formylmethanofuran dehydrogenase, subunit E
YP_003199013.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_003199014.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_0916 ABC transporter related
YP_003199015.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvm:DvMF_3152 extracellular solute-binding protein family 3
YP_003199016.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_3153 polar amino acid ABC transporter, inner membrane subunit
YP_003199017.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0919 polar amino acid ABC transporter, inner membrane subunit
YP_003199018.1	PFAM: ribosomal L11 methyltransferase; methyltransferase small; KEGG: dds:Ddes_1004 ribosomal L11 methyltransferase
YP_003199019.1	PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dma:DMR_17660 putative DNA glycosylase
YP_003199020.1	PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B
YP_003199021.1	KEGG: dds:Ddes_0896 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein
YP_003199022.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: dvl:Dvul_0924 protein of unknown function DUF610, YibQ
YP_003199023.1	PFAM: protein of unknown function DUF534; KEGG: dps:DP3100 hypothetical protein
YP_003199024.1	PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein
YP_003199025.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP3102 ABC transporter, ATP-binding protein
YP_003199026.1	KEGG: dvm:DvMF_3160 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase
YP_003199027.1	KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein
YP_003199028.1	PFAM: ROSMUCR transcriptional regulator; KEGG: dma:DMR_34370 hypothetical protein
YP_003199029.1	catalyzes the formation of fumarate from aspartate
YP_003199030.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dvl:Dvul_0913 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
YP_003199031.1	KEGG: dma:DMR_45660 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_003199032.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)- methyltransferase
YP_003199033.1	KEGG: dvm:DvMF_1408 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase
YP_003199034.1	PFAM: regulatory protein LysR; KEGG: dma:DMR_43980 ModE family transcriptional regulator
YP_003199035.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein
YP_003199036.1	PFAM: Uncharacterised conserved protein UCP018688; KEGG: dma:DMR_43960 hypothetical protein
YP_003199037.1	PFAM: chaperonin Cpn10; KEGG: dvl:Dvul_1195 chaperonin Cpn10
YP_003199038.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_003199039.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1740 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_003199040.1	KEGG: dde:Dde_3077 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003199041.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_003199042.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_003199043.1	involved in the peptidyltransferase reaction during translation
YP_003199044.1	TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21
YP_003199045.1	KEGG: dma:DMR_11140 competence protein F
YP_003199046.1	KEGG: dvu:DVU2767 iron-sulfur flavoprotein, putative
YP_003199048.1	PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein
YP_003199049.1	PFAM: nitroreductase; KEGG: dvl:Dvul_0545 nitroreductase
YP_003199050.1	KEGG: dma:DMR_11170 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat- containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; Tetratricopeptide repeat
YP_003199052.1	PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase
YP_003199053.1	KEGG: dvm:DvMF_0238 hypothetical protein
YP_003199054.1	PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU1432 radical SAM domain-containing protein
YP_003199055.1	KEGG: dma:DMR_26780 hypothetical protein
YP_003199056.1	PFAM: Colicin V production protein; KEGG: dat:HRM2_35760 putative colicin V production protein-like protein
YP_003199057.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_003199058.1	TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: dde:Dde_1452 cytidylate kinase
YP_003199059.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dma:DMR_39240 histidinol-phosphate aminotransferase
YP_003199061.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ
YP_003199062.1	KEGG: dat:HRM2_11020 PilP
YP_003199063.1	KEGG: dat:HRM2_11010 PilO
YP_003199064.1	PFAM: Fimbrial assembly family protein; KEGG: dps:DP0109 fimbrial assembly protein PilN
YP_003199065.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: glo:Glov_1640 type IV pilus assembly protein PilM
YP_003199066.1	PFAM: UspA domain protein; KEGG: dvm:DvMF_0906 UspA domain protein
YP_003199067.1	TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dma:DMR_04930 4-hydroxybenzoate octaprenyltransferase
YP_003199068.1	KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein
YP_003199069.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_003199070.1	KEGG: dma:DMR_04860 hypothetical protein
YP_003199071.1	KEGG: dma:DMR_04850 hypothetical protein
YP_003199072.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_003199073.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_003199074.1	KEGG: dvl:Dvul_2195 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase
YP_003199075.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit
YP_003199076.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_003199077.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_003199078.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2827 H+transporting two-sector ATPase B/B' subunit
YP_003199079.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2826 H+transporting two-sector ATPase B/B' subunit
YP_003199080.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA
YP_003199081.1	KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_003199082.1	KEGG: dvl:Dvul_2186 hypothetical protein
YP_003199083.1	TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dde:Dde_0995 rod shape-determining protein MreC
YP_003199084.1	functions in MreBCD complex in some organisms
YP_003199085.1	KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003199086.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: dma:DMR_04660 putative methylated-DNA-- protein-cysteine methyltransferase
YP_003199087.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pag:PLES_35201 putative ATP-binding component of ABC transporter
YP_003199088.1	PFAM: protein of unknown function DUF1009; KEGG: dvm:DvMF_3002 protein of unknown function DUF1009
YP_003199089.1	TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N- acetylglu cosamineO-acyltransferase; KEGG: dvm:DvMF_3001 UDP-N-acetylglucosamine acyltransferase
YP_003199090.1	TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase
YP_003199091.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_003199092.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: gme:Gmet_2356 outer membrane chaperone Skp (OmpH)
YP_003199093.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dma:DMR_38540 hypothetical protein
YP_003199094.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dma:DMR_38530 lipoprotein releasing system ATP-binding protein LolD
YP_003199095.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dma:DMR_38520 lipoprotein releasing system transmembrane protein LolC
YP_003199096.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase
YP_003199097.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dvl:Dvul_2537 rare lipoprotein A
YP_003199098.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein
YP_003199099.1	PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_2539 histidine triad (HIT) protein
YP_003199100.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_02290 hypothetical protein
YP_003199101.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dma:DMR_02310 amidohydrolase family protein
YP_003199102.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_003199103.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type
YP_003199104.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: geo:Geob_3370 two component, sigma54 specific, transcriptional regulator, Fis family
YP_003199105.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_003199106.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_003199107.1	KEGG: dma:DMR_00640 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain
YP_003199108.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dat:HRM2_11040 TPR repeat domain protein
YP_003199109.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_2572 radical SAM domain protein
YP_003199110.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_003199111.1	KEGG: dma:DMR_39450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region
YP_003199112.1	KEGG: dma:DMR_39060 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003199113.1	PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dvm:DvMF_0011 serine dehydratase alpha chain
YP_003199114.1	KEGG: dma:DMR_05180 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta
YP_003199115.1	PFAM: acyl-ACP thioesterase; KEGG: dvm:DvMF_1428 acyl-ACP thioesterase
YP_003199116.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003199117.1	PFAM: homocysteine S-methyltransferase; KEGG: pub:SAR11_1173 betaine-homocysteine methyltransferase
YP_003199118.1	KEGG: rfr:Rfer_1769 hypothetical protein
YP_003199119.1	TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_3881 hydrogenase maturation protease
YP_003199120.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: afw:Anae109_4306 nickel-dependent hydrogenase large subunit
YP_003199121.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afw:Anae109_4307 methyl-viologen-reducing hydrogenase delta subunit
YP_003199122.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dal:Dalk_1624 methyl-viologen-reducing hydrogenase delta subunit
YP_003199123.1	TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: wsu:WS1121 heavy metal-transporting ATPase
YP_003199124.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator
YP_003199125.1	PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_0958 hypothetical protein
YP_003199126.1	KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Methionine sulfoxide reductase A
YP_003199127.1	PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase
YP_003199128.1	PFAM: protein of unknown function UPF0066; KEGG: dde:Dde_2646 hypothetical protein
YP_003199129.1	TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dma:DMR_34890 ammonium transporter
YP_003199130.1	PFAM: nitrogen regulatory protein P-II; KEGG: dvl:Dvul_1830 nitrogen regulatory protein P- II
YP_003199131.1	PFAM: GlnD PII-uridylyltransferase; amino acid- binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase
YP_003199132.1	KEGG: dvm:DvMF_2817 hypothetical protein
YP_003199133.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system
YP_003199134.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dol:Dole_2764 binding-protein-dependent transport systems inner membrane component
YP_003199135.1	KEGG: dol:Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase
YP_003199137.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dma:DMR_08090 hypothetical protein
YP_003199138.1	PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1271 glycosyl transferase family protein
YP_003199139.1	TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase
YP_003199140.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: gbm:Gbem_0904 type II secretion system protein E
YP_003199141.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: mxa:MXAN_2881 alcohol dehydrogenase, iron- containing
YP_003199142.1	KEGG: dat:HRM2_16410 UspA12
YP_003199143.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_1903 putative regulatory protein, FmdB family
YP_003199144.1	PFAM: MGS domain protein; KEGG: dds:Ddes_0880 IMP cyclohydrolase
YP_003199145.1	TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dvm:DvMF_1947 GTP-binding protein HflX
YP_003199146.1	PFAM: protein of unknown function DUF205; KEGG: dvm:DvMF_1944 protein of unknown function DUF205
YP_003199147.1	PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein
YP_003199148.1	KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region
YP_003199149.1	KEGG: dvm:DvMF_1941 hypothetical protein
YP_003199150.1	PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain- containing protein
YP_003199151.1	KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase
YP_003199152.1	KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative
YP_003199153.1	PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like
YP_003199154.1	PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: dde:Dde_1216 alkaline phosphatase
YP_003199155.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family
YP_003199156.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: gme:Gmet_2909 phosphomethylpyrimidine kinase
YP_003199157.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein
YP_003199158.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_04310 ABC-type transporter, permease protein
YP_003199159.1	PFAM: NMT1/THI5 like domain protein; KEGG: csa:Csal_1934 NlpA lipoprotein
YP_003199160.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase)
YP_003199162.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_003199163.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_003199164.1	PFAM: Methyltransferase type 11; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_2348 methyltransferase type 11
YP_003199165.1	PFAM: protein of unknown function DUF721; KEGG: dma:DMR_42040 hypothetical protein
YP_003199166.1	KEGG: dma:DMR_42030 hypothetical protein
YP_003199167.1	PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: dma:DMR_35190 putative phosphatase
YP_003199168.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dma:DMR_43850 two-component hybrid sensor and regulator
YP_003199169.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dma:DMR_17530 succinate-semialdehyde dehydrogenase
YP_003199170.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_003199171.1	PFAM: ketose-bisphosphate aldolase class-II; KEGG: hypothetical protein LOC100262718
YP_003199172.1	PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein
YP_003199173.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase
YP_003199174.1	KEGG: dma:DMR_01950 iron-sulfur binding protein
YP_003199175.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit
YP_003199176.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative
YP_003199177.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A
YP_003199178.1	PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C
YP_003199179.1	KEGG: dma:DMR_01900 heterodisulfide reductase subunit C
YP_003199180.1	PFAM: thiamineS protein; KEGG: gme:Gmet_1044 thiamine S
YP_003199181.1	KEGG: gsu:GSU0910 aldehyde:ferredoxin oxidoreductase, tungsten-containing; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase
YP_003199182.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter, DctM subunit
YP_003199183.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_03160 DctQ1
YP_003199184.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_03170 DctP1
YP_003199185.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_1046 6-phosphogluconate dehydrogenase, NAD-binding
YP_003199186.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: dvm:DvMF_2005 altronate dehydratase
YP_003199187.1	PFAM: SAF domain protein; KEGG: dds:Ddes_2374 SAF domain protein
YP_003199188.1	PFAM: Protein of unknown function DUF2088; KEGG: dvm:DvMF_1997 hypothetical protein
YP_003199189.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; GAF domain protein; KEGG: dds:Ddes_2373 sigma54 specific transcriptional regulator, fis family
YP_003199190.1	KEGG: dvm:DvMF_1926 transcriptional regulator, TraR/DksA family
YP_003199191.1	PFAM: lipid A biosynthesis domain protein; KEGG: atc:AGR_C_4037 hypothetical protein
YP_003199192.1	PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein
YP_003199193.1	KEGG: pin:Ping_1111 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; metal-dependent phosphohydrolase HD region; PAS domain containing protein
YP_003199194.1	KEGG: dvm:DvMF_2350 diguanylate cyclase with PAS/PAC and GAF sensors; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein
YP_003199195.1	PFAM: thioesterase superfamily protein; KEGG: dar:Daro_1078 thioesterase superfamily protein
YP_003199198.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein
YP_003199199.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0402 secretion protein HlyD
YP_003199200.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dde:Dde_0401 hydrophobe/amphiphile efflux-1 HAE1
YP_003199201.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_48490 outer membrane protein
YP_003199202.1	KEGG: dat:HRM2_34670 hypothetical protein
YP_003199205.1	KEGG: dat:HRM2_00160 hypothetical protein
YP_003199206.1	PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; protein of unknown function DUF1058; KEGG: ppw:PputW619_3912 SH3 type 3 domain- containing protein
YP_003199207.1	PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein
YP_003199208.1	KEGG: mxa:MXAN_4149 response regulator FrzS
YP_003199209.1	KEGG: mucin-associated surface protein (MASP)
YP_003199210.1	SMART: PDZ/DHR/GLGF domain protein; KEGG: pmy:Pmen_3046 putative membrane-associated zinc metalloprotease
YP_003199212.1	PFAM: heat shock protein Hsp20; KEGG: bja:blr4637 HspC2 heat shock protein
YP_003199213.1	PFAM: Abortive infection protein; KEGG: tgr:Tgr7_3154 hypothetical protein
YP_003199216.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein
YP_003199217.1	PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: histidine kinase HAMP region domain protein; protein phosphatase 2C domain protein; KEGG: pau:PA14_02150 hypothetical protein
YP_003199218.1	KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_003199219.1	KEGG: dde:Dde_3046 hypothetical protein
YP_003199220.1	PFAM: Domain of unknown function DUF1987; KEGG: dde:Dde_3045 hypothetical protein
YP_003199221.1	KEGG: acp:A2cp1_0340 split soret cytochrome c precursor
YP_003199222.1	KEGG: sat:SYN_01191 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase
YP_003199223.1	PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase
YP_003199224.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix
YP_003199226.1	PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0500 ferredoxin-nitroreductase protein
YP_003199228.1	KEGG: asu:Asuc_1537 hypothetical protein
YP_003199229.1	KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein
YP_003199230.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dma:DMR_29640 response regulator receiver protein
YP_003199233.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer
YP_003199234.1	KEGG: dat:HRM2_06360 hypothetical protein
YP_003199235.1	PFAM: UspA domain protein; KEGG: dma:DMR_22770 hypothetical protein
YP_003199236.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein
YP_003199237.1	PFAM: UspA domain protein; KEGG: lpf:lpl2309 hypothetical protein
YP_003199238.1	PFAM: acriflavin resistance protein; KEGG: dat:HRM2_02370 cobalt-zinc-cadmium resistance protein CzcA-like protein
YP_003199239.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dat:HRM2_02380 putative membrane-fusion protein
YP_003199240.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_02390 outer membrane efflux protein
YP_003199241.1	PFAM: AIG2 family protein; KEGG: azo:azo2848 putative AIG2-like protein
YP_003199242.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: dal:Dalk_2029 cupin 2 conserved barrel domain protein
YP_003199243.1	KEGG: dal:Dalk_2563 hypothetical protein
YP_003199244.1	PFAM: NapC/NirT cytochrome c domain protein; KEGG: dal:Dalk_2564 NapC/NirT cytochrome c domain protein
YP_003199245.1	KEGG: dma:DMR_24470 hypothetical protein
YP_003199246.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_003199247.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: pag:PLES_42621 hypothetical protein
YP_003199248.1	KEGG: hypothetical protein
YP_003199249.1	KEGG: dma:DMR_06110 glutamine synthetase type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp
YP_003199250.1	KEGG: dma:DMR_45210 putative zinc resistance- associated protein precursor
YP_003199251.1	PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase
YP_003199252.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator
YP_003199253.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: dde:Dde_2560 3-Cys thioredoxin peroxidase / 1- Cys peroxiredoxin
YP_003199254.1	PFAM: aspartate/glutamate/uridylate kinase; KEGG: dps:DP0145 hypothetical protein
YP_003199255.1	KEGG: pca:Pcar_2385 hypothetical protein
YP_003199256.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1502 ABC transporter related
YP_003199257.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1501 binding-protein-dependent transport systems inner membrane component
YP_003199258.1	KEGG: dps:DP0331 hypothetical protein
YP_003199259.1	KEGG: dvu:DVU0064 hypothetical protein
YP_003199260.1	PFAM: protein of unknown function DUF82; KEGG: acp:A2cp1_3352 protein of unknown function DUF82
YP_003199261.1	PFAM: peptidase M48 Ste24p; KEGG: dat:HRM2_15460 endopeptidase family protein
YP_003199262.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD
YP_003199263.1	PFAM: phosphoesterase RecJ domain protein; KEGG: dvm:DvMF_1755 phosphoesterase RecJ domain protein
YP_003199264.1	KEGG: dvm:DvMF_1713 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease
YP_003199265.1	PFAM: aminotransferase class V; KEGG: dvu:DVU0494 aminotransferase, class V
YP_003199266.1	PFAM: Domain of unknown function DUF1844; KEGG: dal:Dalk_3378 domain of unknown function DUF1844
YP_003199267.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_003199268.1	KEGG: dma:DMR_05110 putative phenylacetate-coenzyme A ligase
YP_003199269.1	PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dvm:DvMF_1037 peptidase A24A domain protein
YP_003199270.1	PFAM: formate dehydrogenase subunit FdhD; KEGG: dvm:DvMF_1232 formate dehydrogenase accessory protein FdhD, putative
YP_003199271.1	PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase
YP_003199272.1	PFAM: Polyprenyl synthetase; KEGG: dma:DMR_35820 octaprenyl-diphosphate synthase
YP_003199273.1	PFAM: protein of unknown function DUF191; KEGG: dma:DMR_35810 hypothetical protein
YP_003199274.1	TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein
YP_003199275.1	TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein
YP_003199276.1	PFAM: Protein of unknown function DUF2065; KEGG: dma:DMR_35780 hypothetical membrane protein
YP_003199277.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvm:DvMF_2496 ubiquinone/menaquinone biosynthesis methyltransferase
YP_003199278.1	KEGG: dma:DMR_35760 hypothetical protein
YP_003199279.1	KEGG: hypothetical protein
YP_003199280.1	PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3
YP_003199281.1	TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase
YP_003199282.1	SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_11820 putative DNA-binding protein
YP_003199283.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: dma:DMR_11830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase
YP_003199284.1	PFAM: outer membrane efflux protein; KEGG: pca:Pcar_3003 outer membrane efflux protein
YP_003199285.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tgr:Tgr7_0656 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_003199286.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_3002 membrane-fusion protein, component of multidrug efflux system
YP_003199287.1	PFAM: acriflavin resistance protein; KEGG: pca:Pcar_3001 cation-multidrug efflux pump
YP_003199288.1	KEGG: pca:Pcar_1926 putative lipoprotein
YP_003199289.1	PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_22630 GlpA
YP_003199290.1	PFAM: diacylglycerol kinase; KEGG: tau:Tola_1000 diacylglycerol kinase
YP_003199291.1	KEGG: dvu:DVU0400 hypothetical protein
YP_003199292.1	KEGG: dvm:DvMF_1153 phenylacetate--CoA ligase
YP_003199293.1	PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: dma:DMR_06440 arsenical pump membrane protein
YP_003199294.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein
YP_003199295.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein
YP_003199296.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; cytoplasmic chaperone TorD family protein; molydopterin dinucleotide-binding region; KEGG: dat:HRM2_41650 multi-domain fusion protein (anaerobic dehydrogenase/molybdopterin oxidoreductase/anaerobic formate hydrogen lyase 4Fe-4S complex)
YP_003199297.1	PFAM: protein of unknown function DUF169; KEGG: dvm:DvMF_2193 protein of unknown function DUF169
YP_003199298.1	KEGG: ret:RHE_PE00114 sugar ABC transporter, permease protein
YP_003199299.1	KEGG: dat:HRM2_12100 hypothetical protein
YP_003199300.1	PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_12110 hypothetical protein
YP_003199301.1	PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_0283 outer membrane efflux protein
YP_003199302.1	KEGG: dma:DMR_02070 putative response regulator receiver protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_003199303.1	PFAM: Auxin Efflux Carrier; KEGG: avn:Avin_49900 permease
YP_003199304.1	KEGG: lhk:LHK_00160 hypothetical protein
YP_003199305.1	KEGG: smt:Smal_2090 hypothetical protein
YP_003199306.1	PFAM: peptidase C39 bacteriocin processing; KEGG: pag:PLES_33701 putative double-glycine peptidase
YP_003199308.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: geo:Geob_1785 sigma54 specific transcriptional regulator, Fis family
YP_003199309.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dat:HRM2_22420 outer membrane protein (putative Skp protein)
YP_003199310.1	KEGG: gur:Gura_1157 hypothetical protein
YP_003199311.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase
YP_003199312.1	PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein
YP_003199313.1	PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dat:HRM2_22170 EriC2
YP_003199314.1	PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: dma:DMR_06140 putative aldolase
YP_003199315.1	PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein
YP_003199316.1	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dde:Dde_0634 extracellular solute-binding protein
YP_003199317.1	KEGG: dde:Dde_0635 tripartite ATP-independent periplasmic transporters, DctQ component, putative
YP_003199318.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_0636 TRAP dicarboxylate transporter- DctM subunit
YP_003199319.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dma:DMR_38980 pseudouridine synthase
YP_003199320.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel
YP_003199321.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein
YP_003199322.1	KEGG: sat:SYN_00425 hypothetical protein
YP_003199323.1	KEGG: dvl:Dvul_0425 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_003199324.1	TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: dvm:DvMF_1468 adenylosuccinate lyase
YP_003199325.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein
YP_003199326.1	KEGG: dvm:DvMF_1466 hypothetical protein
YP_003199327.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein
YP_003199328.1	KEGG: dvm:DvMF_1465 hypothetical protein
YP_003199329.1	PFAM: protein of unknown function DUF39; KEGG: dvm:DvMF_1464 protein of unknown function DUF39
YP_003199330.1	PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; KEGG: dvm:DvMF_2081 chromosomal replication initiator protein DnaA
YP_003199331.1	KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain
YP_003199332.1	KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein
YP_003199333.1	KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A
YP_003199334.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0264 ferredoxin
YP_003199335.1	KEGG: dat:HRM2_32230 hypothetical protein
YP_003199336.1	KEGG: vcj:VCD_000689 GlpM protein
YP_003199337.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit
YP_003199338.1	PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0629 cyclic nucleotide-binding domain- containing protein
YP_003199339.1	TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein
YP_003199340.1	TIGRFAM: probable solute symporter protein; KEGG: hch:HCH_05071 hypothetical protein
YP_003199341.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_2222 acetate--CoA ligase
YP_003199342.1	PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_06670 putative response regulator receiver protein
YP_003199343.1	KEGG: tbd:Tbd_1218 transmembrane protein
YP_003199344.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: aeh:Mlg_1512 rhodanese domain-containing protein
YP_003199345.1	PFAM: protein of unknown function UPF0029; KEGG: dvm:DvMF_3177 protein of unknown function UPF0029
YP_003199346.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: dma:DMR_05560 putative 6-phosphogluconate dehydrogenase
YP_003199347.1	KEGG: dma:DMR_05550 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase
YP_003199348.1	TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: gme:Gmet_2618 6-phosphogluconolactonase
YP_003199349.1	KEGG: dvl:Dvul_2023 hypothetical protein
YP_003199350.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2022 extracellular solute-binding protein
YP_003199351.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter, inner membrane subunit
YP_003199352.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_1342 ABC transporter related
YP_003199353.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein
YP_003199354.1	PFAM: phosphoglucose isomerase (PGI); KEGG: tgr:Tgr7_0871 glucose-6-phosphate isomerase
YP_003199355.1	PFAM: Silent information regulator protein Sir2; KEGG: dma:DMR_13880 NAD-dependent deacetylase
YP_003199356.1	KEGG: dal:Dalk_4409 putative lipoprotein
YP_003199357.1	KEGG: dvu:DVU3353 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein
YP_003199358.1	KEGG: dvl:Dvul_0040 hypothetical protein
YP_003199359.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_0038 NAD-dependent epimerase/dehydratase
YP_003199360.1	KEGG: pna:Pnap_4979 hypothetical protein
YP_003199362.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix
YP_003199363.1	KEGG: sat:SYN_03526 putative cytoplasmic protein
YP_003199365.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_p2_00010 putative chromosome partitioning protein ParA
YP_003199366.1	KEGG: dma:DMR_p1_00020 hypothetical protein
YP_003199368.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pna:Pnap_4980 cobyrinic acid a,c-diamide synthase
YP_003199369.1	KEGG: pna:Pnap_4979 hypothetical protein
YP_003199371.1	KEGG: conserved hypothetical protein
YP_003199373.1	PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease
YP_003199375.1	KEGG: conserved hypothetical protein
YP_003199377.1	KEGG: dma:DMR_36590 putative transposase
YP_003199378.1	PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB
YP_003199379.1	KEGG: dat:HRM2_19930 hypothetical protein
YP_003199380.1	KEGG: hps:HPSH_02375 type II DNA modification enzyme (methyltransferase); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_003199382.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: slo:Shew_3490 XRE family transcriptional regulator
YP_003199384.1	PFAM: Excinuclease ABC C subunit domain protein; KEGG: bgl:bglu_1g23800 hypothetical protein
YP_003199385.1	PFAM: integrase family protein; KEGG: sfu:Sfum_2367 phage integrase family protein
YP_003199388.1	KEGG: hypothetical protein
YP_003199390.1	KEGG: ppr:PBPRA2370 putative transposase
YP_003199391.1	PFAM: Integrase catalytic region; KEGG: ppr:PBPRA1704 putative transposase
YP_003199392.1	PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator
YP_003199393.1	PFAM: protein of unknown function DUF262; KEGG: sbl:Sbal_3373 hypothetical protein
YP_003199398.1	KEGG: dma:DMR_36280 hypothetical protein
YP_003199400.1	KEGG: dma:DMR_14600 hypothetical protein
YP_003199402.1	PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase
YP_003199403.1	KEGG: xcc:XCC4191 phage-related regulatory protein CII