-- dump date 20240506_005641 -- class Genbank::Contig -- table contig_comment -- id comment NC_021184.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003273.1.REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: GermanyREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water,REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, SoilREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobeREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: NoREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mudREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, GrollREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81 Pseudo Genes (internal stop) :: 12 of 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81 Pseudo Genes (internal stop) :: 12 of 81 Pseudo Genes (multiple problems) :: 16 of 81REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81 Pseudo Genes (internal stop) :: 12 of 81 Pseudo Genes (multiple problems) :: 16 of 81 CRISPR Arrays :: 6REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81 Pseudo Genes (internal stop) :: 12 of 81 Pseudo Genes (multiple problems) :: 16 of 81 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003273.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091043 Source DNA available from Alfonso Stams (fons.stams@wur.nl) Organism available from DSMZ: DSM 7213 Contacts: Alfonso Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Desulfotomaculum gibsoniae DSM 7213 collection_date :: 1999 lat_lon :: 51.251951 7.452031 depth :: Missing alt_elev :: Missing country :: Germany environment :: Animal intestinal microflora, Fresh water, Mud, Sea water, Soil num_replicons :: 1 ref_biomaterial :: DSM 7213 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Obligate anaerobe isol_growth_condt :: 10555363 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi07572 Type Strain :: No Funding Program :: DOE-CSP 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: freshwater mud Isolation Comments :: isolated by K.-H. Blotevogel, Groll Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000233715.2-RS_2024_03_22 Annotation Date :: 03/22/2024 16:48:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,671 CDSs (total) :: 4,580 Genes (coding) :: 4,499 CDSs (with protein) :: 4,499 Genes (RNA) :: 91 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 5 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 0 of 81 Pseudo Genes (frameshifted) :: 19 of 81 Pseudo Genes (incomplete) :: 68 of 81 Pseudo Genes (internal stop) :: 12 of 81 Pseudo Genes (multiple problems) :: 16 of 81 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## COMPLETENESS: full length.