-- dump date 20140619_064829 -- class Genbank::CDS -- table cds_note -- id note YP_009226.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_009227.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_009228.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_009229.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_009231.1 identified by match to protein family HMM PF00582 YP_009232.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_009234.1 identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786 YP_009235.1 identified by match to protein family HMM PF04290 YP_009236.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_009238.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009239.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_009240.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_009243.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009244.1 identified by similarity to SP:P30820; match to protein family HMM PF00301; match to protein family HMM PF02915 YP_009246.1 identified by similarity to OMNI:AF0308 YP_009247.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009249.1 identified by similarity to OMNI:NTL01TT0251 YP_009250.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009251.1 identified by similarity to SP:O31482 YP_009252.1 identified by similarity to OMNI:NTL02ML3762 YP_009253.1 identified by similarity to SP:P37584; match to protein family HMM PF01588 YP_009254.1 identified by similarity to OMNI:NTL02MA4447; match to protein family HMM PF01968; match to protein family HMM PF05378 YP_009255.1 identified by match to protein family HMM PF00392 YP_009256.2 identified by match to protein family HMM PF03591 YP_009257.1 identified by similarity to OMNI:NTL01LM1435; match to protein family HMM PF06063 YP_009258.1 identified by match to protein family HMM PF00857 YP_009259.1 identified by match to protein family HMM PF01323 YP_009262.1 identified by similarity to OMNI:NTL01TT1568; match to protein family HMM PF04463 YP_009263.1 identified by match to protein family HMM PF01553 YP_009264.1 identified by match to protein family HMM PF01258 YP_009266.1 identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476 YP_009267.2 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_009268.1 identified by similarity to SP:P33134; match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_009269.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_009271.1 identified by similarity to SP:P15070; match to protein family HMM PF01052 YP_009272.1 identified by similarity to SP:P23452; match to protein family HMM PF03748 YP_009273.1 identified by similarity to SP:O07887; match to protein family HMM PF00691 YP_009274.1 identified by similarity to SP:O07887; match to protein family HMM PF00691 YP_009275.1 identified by similarity to SP:P28611; match to protein family HMM PF01618 YP_009276.2 identified by similarity to SP:O66631; match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_009277.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_009278.2 identified by similarity to OMNI:CT0714; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_009279.1 identified by match to protein family HMM PF01207 YP_009280.1 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 YP_009281.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_009282.1 identified by match to protein family HMM PF00440 YP_009283.1 identified by similarity to OMNI:CC1787; match to protein family HMM TIGR01730 YP_009284.1 identified by match to protein family HMM PF00873 YP_009285.1 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_009286.1 identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_009287.1 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_009288.1 identified by match to protein family HMM PF01047 YP_009291.1 identified by match to protein family HMM PF00383 YP_009293.1 identified by similarity to OMNI:NTL01PF0547 YP_009295.1 identified by match to protein family HMM PF00149 YP_009296.1 identified by similarity to SP:Q47155; match to protein family HMM PF00817 YP_009297.1 identified by similarity to SP:P26396; match to protein family HMM PF00483 YP_009298.1 identified by similarity to GP:1197641 YP_009299.1 identified by similarity to SP:P39631 YP_009300.1 identified by match to protein family HMM PF01041 YP_009301.2 identified by match to protein family HMM PF00535 YP_009302.1 identified by similarity to GP:27349066 YP_009303.1 identified by similarity to OMNI:CT0076 YP_009304.1 identified by similarity to SP:Q06916; match to protein family HMM PF02535 YP_009305.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_009306.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009307.1 identified by similarity to GP:12543284 YP_009308.1 identified by similarity to OMNI:NTL01TE1132; match to protein family HMM PF03745 YP_009309.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00524 YP_009310.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_009312.1 identified by similarity to GP:29897211; match to protein family HMM PF06196 YP_009313.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_009314.1 identified by similarity to OMNI:VCA0583 YP_009315.1 identified by similarity to SP:P32055 YP_009316.1 identified by similarity to OMNI:NTL01SS01089 YP_009317.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009318.1 identified by match to protein family HMM PF00534; match to protein family HMM PF02231 YP_009319.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009320.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_009321.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_009322.1 identified by similarity to SP:P23860; match to protein family HMM PF00528 YP_009323.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_009324.1 identified by similarity to SP:P02929; match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_009325.1 identified by match to protein family HMM PF00593 YP_009326.1 identified by match to protein family HMM PF01209 YP_009327.1 identified by match to protein family HMM PF01297 YP_009328.1 identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005 YP_009329.1 identified by similarity to SP:P44661; match to protein family HMM PF00950 YP_009330.1 identified by similarity to SP:P10346; match to protein family HMM PF00005 YP_009331.1 identified by similarity to SP:P10345; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009332.1 identified by similarity to SP:P10344; match to protein family HMM PF00497 YP_009334.1 identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009335.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_009336.1 identified by match to protein family HMM PF00072 YP_009337.1 identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_009338.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_009339.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_009340.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_009341.1 identified by match to protein family HMM PF01522 YP_009342.1 identified by match to protein family HMM PF00535 YP_009343.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_009344.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_009345.1 identified by similarity to SP:P16682 YP_009346.1 identified by similarity to OMNI:NTL01MT00980 YP_009348.1 identified by similarity to OMNI:NTL02ML1727; match to protein family HMM PF03601 YP_009351.1 identified by similarity to SP:P37624; match to protein family HMM PF00005 YP_009352.1 identified by similarity to SP:P75774 YP_009353.1 identified by similarity to OMNI:NTL03PA01626; match to protein family HMM PF01594 YP_009354.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277 YP_009355.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_009357.1 identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925 YP_009359.1 identified by match to protein family HMM PF00535 YP_009360.1 identified by similarity to OMNI:NTL01AA00924 YP_009363.1 identified by match to protein family HMM PF00072 YP_009364.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009365.1 identified by match to protein family HMM PF00072 YP_009366.1 identified by match to protein family HMM PF02163 YP_009367.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_009368.1 identified by similarity to OMNI:CT0872; match to protein family HMM PF03692 YP_009369.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125 YP_009370.1 identified by match to protein family HMM PF00072 YP_009374.1 identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925 YP_009376.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00672 YP_009377.1 identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326 YP_009380.1 identified by match to protein family HMM PF01663 YP_009381.1 identified by match to protein family HMM PF00580 YP_009382.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_009383.1 identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_009384.1 identified by match to protein family HMM PF03061 YP_009385.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_009386.1 identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_009387.1 identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369 YP_009389.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_009390.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_009391.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_009392.1 identified by match to protein family HMM PF00528 YP_009393.1 identified by match to protein family HMM PF00528 YP_009394.1 identified by match to protein family HMM PF00496 YP_009395.1 identified by match to protein family HMM PF00015; match to protein family HMM PF01814 YP_009396.1 identified by similarity to GP:1019859; match to protein family HMM PF00155 YP_009397.1 identified by match to protein family HMM PF00037 YP_009398.1 identified by similarity to SP:P37600; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_009400.1 identified by similarity to GP:4589921; similarity to OMNI:AF0177; match to protein family HMM PF00994; match to protein family HMM PF02663 YP_009401.1 identified by match to protein family HMM PF03009 YP_009402.1 identified by similarity to SP:P37329; match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_009404.2 identified by similarity to SP:Q08385; similarity to OMNI:CC3006; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_009405.1 identified by similarity to SP:P37732; match to protein family HMM PF00005 YP_009406.1 identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR01095 YP_009407.1 identified by match to protein family HMM PF04055 YP_009408.1 identified by similarity to OMNI:PP0317; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009411.1 identified by similarity to OMNI:AF2126; match to protein family HMM PF02596 YP_009412.1 identified by similarity to SP:P76237; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009414.1 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613 YP_009416.1 identified by similarity to OMNI:CC3049 YP_009417.1 identified by match to protein family HMM PF01555; match to protein family HMM PF02195 YP_009419.1 identified by similarity to GP:6723224 YP_009422.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_009423.1 identified by match to protein family HMM PF01343 YP_009424.1 identified by similarity to OMNI:NTL01RS0859 YP_009425.1 identified by match to protein family HMM PF03864 YP_009427.1 identified by match to protein family HMM TIGR01593 YP_009428.1 identified by match to protein family HMM PF05838 YP_009434.1 identified by similarity to GP:1834290 YP_009435.1 identified by similarity to SP:P79678 YP_009436.1 identified by similarity to SP:P79679 YP_009437.1 identified by similarity to OMNI:NTL03ST4078 YP_009439.1 identified by similarity to GP:19483753 YP_009440.1 identified by similarity to SP:P08558 YP_009441.1 identified by match to protein family HMM TIGR01644 YP_009442.1 identified by similarity to GP:19483756 YP_009443.1 identified by similarity to GP:19483757 YP_009444.1 identified by similarity to GP:19483737 YP_009448.1 identified by similarity to OMNI:NTL02MA0751 YP_009449.1 identified by similarity to OMNI:CC3185 YP_009452.1 identified by similarity to OMNI:VC1871 YP_009461.1 identified by match to protein family HMM PF00589 YP_009462.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_009466.1 identified by similarity to SP:P10390; match to protein family HMM PF02579 YP_009467.1 identified by match to protein family HMM PF02810 YP_009468.1 identified by similarity to OMNI:NTL01XC3841 YP_009470.1 identified by match to protein family HMM PF00782 YP_009471.1 identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326 YP_009472.1 identified by match to protein family HMM PF00072 YP_009473.1 identified by similarity to OMNI:NTL01NSC0089 YP_009475.1 identified by similarity to OMNI:AF2125; match to protein family HMM PF01925 YP_009477.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_009480.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_009481.1 identified by match to protein family HMM PF00583 YP_009482.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009483.1 identified by similarity to SP:P33394; match to protein family HMM PF00072 YP_009484.1 identified by match to protein family HMM PF00072 YP_009485.1 identified by match to protein family HMM PF00582 YP_009487.1 identified by similarity to SP:P94690 YP_009488.1 identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_009493.1 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_009494.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009495.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518 YP_009497.1 identified by similarity to GP:21899254 YP_009499.1 identified by match to protein family HMM PF01522 YP_009500.1 identified by similarity to OMNI:NTL02ST1965; match to protein family HMM PF03625 YP_009501.1 identified by match to protein family HMM PF00165 YP_009502.1 identified by similarity to OMNI:NTL01FN1550; match to protein family HMM PF00903 YP_009503.1 identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_009504.1 identified by similarity to GP:47012; match to protein family HMM PF00534 YP_009505.1 identified by match to protein family HMM PF02397 YP_009506.1 identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_009507.1 identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_009508.2 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_009509.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_009510.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_009513.2 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_009515.1 identified by similarity to SP:P16676; match to protein family HMM PF00005 YP_009518.1 identified by match to protein family HMM PF00535 YP_009520.1 identified by match to protein family HMM PF00557 YP_009523.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_009524.1 identified by match to protein family HMM PF04055 YP_009526.1 identified by similarity to GP:3493637 YP_009529.1 identified by similarity to SP:P10624; match to protein family HMM PF00037 YP_009531.1 identified by match to protein family HMM PF00460 YP_009532.1 identified by similarity to OMNI:NTL01AT1594 YP_009533.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_009534.1 identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026 YP_009535.1 identified by similarity to SP:P31068 YP_009536.1 identified by similarity to SP:P23448; match to protein family HMM PF01706; match to protein family HMM TIGR00207 YP_009537.1 identified by similarity to SP:P25798; match to protein family HMM PF01514; match to protein family HMM TIGR00206 YP_009538.1 identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_009539.1 identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395 YP_009540.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_009542.1 identified by match to protein family HMM PF00515 YP_009543.1 identified by similarity to GP:20560072; match to protein family HMM PF01370 YP_009544.1 identified by similarity to GP:295166 YP_009545.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_009546.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_009547.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_009549.1 identified by similarity to SP:P24192; match to protein family HMM PF01924 YP_009550.1 identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_009551.1 identified by match to protein family HMM PF02397 YP_009552.1 identified by match to protein family HMM PF00534 YP_009554.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_009555.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009558.1 identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM TIGR01205 YP_009559.1 identified by similarity to GP:17221411 YP_009560.1 identified by match to protein family HMM PF01041 YP_009562.1 identified by match to protein family HMM PF00702 YP_009563.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_009564.1 identified by similarity to SP:P26839; match to protein family HMM PF00132 YP_009565.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_009566.1 identified by match to protein family HMM PF01370 YP_009567.1 identified by similarity to SP:P23522; match to protein family HMM PF03328 YP_009568.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009571.1 identified by match to protein family HMM PF00132 YP_009573.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102 YP_009574.1 identified by match to protein family HMM PF02348 YP_009575.1 identified by similarity to SP:P39627; similarity to GP:4741793 YP_009576.1 identified by match to protein family HMM PF01041 YP_009577.1 identified by match to protein family HMM PF00465 YP_009578.1 identified by similarity to OMNI:NTL01AT2375 YP_009579.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_009580.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_009581.1 identified by similarity to OMNI:NTL02ML5790 YP_009584.1 catalyzes the formation of 2-acetolactate from pyruvate YP_009585.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit YP_009586.1 identified by similarity to OMNI:NTL01AA01111 YP_009587.2 identified by match to protein family HMM PF00425 YP_009588.1 identified by similarity to SP:P28819; match to protein family HMM PF00117 YP_009589.1 identified by similarity to OMNI:NTL01RS1629; match to protein family HMM PF02578 YP_009590.1 identified by match to protein family HMM PF01812 YP_009591.1 identified by match to protein family HMM PF00149 YP_009595.1 identified by similarity to GP:21899254 YP_009597.1 identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629 YP_009598.1 identified by match to protein family HMM PF01558 YP_009599.1 identified by match to protein family HMM PF00208 YP_009601.1 identified by similarity to SP:P50971; match to protein family HMM PF00070 YP_009602.1 identified by similarity to SP:P80579 YP_009603.1 identified by match to protein family HMM PF00027 YP_009604.1 identified by match to protein family HMM PF00884 YP_009605.1 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931 YP_009608.1 identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613 YP_009610.1 identified by match to protein family HMM PF00497 YP_009611.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009612.1 identified by match to protein family HMM PF00005 YP_009613.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009614.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_009616.1 identified by similarity to GP:14278621; match to protein family HMM PF00155 YP_009617.2 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_009618.1 identified by match to protein family HMM PF04055 YP_009619.1 identified by similarity to SP:O07513; match to protein family HMM PF01230 YP_009620.1 identified by similarity to SP:P05514; match to protein family HMM PF00216 YP_009621.1 identified by similarity to SP:P10100; match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413 YP_009622.1 identified by match to protein family HMM PF00682 YP_009626.1 identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064 YP_009627.1 identified by similarity to GP:902748; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066 YP_009628.1 identified by similarity to SP:Q46582 YP_009629.1 identified by similarity to SP:P29946; match to protein family HMM PF01656; match to protein family HMM TIGR00379 YP_009630.1 identified by match to protein family HMM PF00892 YP_009631.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_009632.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_009635.1 identified by match to protein family HMM PF01075 YP_009636.1 identified by similarity to GP:3288678; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_009637.1 identified by similarity to GP:3395637; match to protein family HMM PF02386 YP_009638.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_009639.1 identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789 YP_009640.1 identified by similarity to GP:1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009641.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_009642.1 identified by match to protein family HMM PF03435 YP_009643.1 identified by similarity to GP:498170; match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_009645.1 identified by similarity to OMNI:NTL01SS00132; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_009646.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_009647.1 identified by match to protein family HMM PF00582 YP_009648.1 identified by similarity to SP:O66043; match to protein family HMM PF00614 YP_009650.1 identified by similarity to SP:P14285; match to protein family HMM PF02417 YP_009652.1 identified by similarity to OMNI:NTL01SM02466; match to protein family HMM PF03992 YP_009653.1 identified by similarity to GP:3005972; match to protein family HMM PF00037 YP_009654.1 identified by similarity to GP:3005971; match to protein family HMM PF00346 YP_009655.1 identified by similarity to GP:3005970 YP_009656.1 identified by similarity to GP:3005969 YP_009657.1 identified by similarity to GP:3005968; match to protein family HMM PF00146 YP_009658.1 identified by similarity to GP:3005967; match to protein family HMM PF00361 YP_009660.1 identified by match to protein family HMM PF00440 YP_009661.1 identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_009662.1 identified by similarity to GP:14025566; match to protein family HMM PF00873 YP_009663.1 identified by match to protein family HMM PF03795 YP_009664.1 identified by similarity to OMNI:NTL01TT0248 YP_009665.1 identified by similarity to SP:P39761; match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_009666.1 identified by match to protein family HMM PF02562 YP_009667.1 identified by match to protein family HMM PF00929 YP_009668.1 identified by match to protein family HMM PF00571 YP_009669.1 identified by match to protein family HMM PF00571 YP_009670.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_009671.1 identified by similarity to SP:P32706; match to protein family HMM PF04341 YP_009672.1 identified by similarity to SP:P32054; match to protein family HMM TIGR01472 YP_009673.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229 YP_009674.1 identified by similarity to SP:P08391; match to protein family HMM PF01687; match to protein family HMM TIGR00083 YP_009675.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_009677.2 identified by match to protein family HMM PF00580 YP_009681.1 identified by match to protein family HMM PF00563 YP_009684.1 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate YP_009685.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate YP_009686.1 identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_009687.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356 YP_009688.1 identified by match to protein family HMM PF02153 YP_009689.1 identified by similarity to SP:O66849; match to protein family HMM PF00425; match to protein family HMM PF04715 YP_009690.1 identified by similarity to SP:Q08654; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_009691.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245 YP_009692.1 identified by match to protein family HMM PF00218 YP_009693.1 identified by match to protein family HMM PF00697 YP_009694.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_009695.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_009698.1 identified by similarity to OMNI:SO3543; match to protein family HMM PF00665 YP_009701.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183 YP_009702.1 identified by match to protein family HMM PF00149 YP_009703.1 identified by similarity to SP:P54736; match to protein family HMM PF00069 YP_009705.1 identified by similarity to SP:P17963; match to protein family HMM PF01370 YP_009706.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009707.1 identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 YP_009708.1 identified by similarity to SP:P38046; match to protein family HMM PF00005 YP_009709.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_009711.1 identified by similarity to SP:P12044; match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_009712.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_009713.1 identified by similarity to SP:P76085; match to protein family HMM PF00501 YP_009714.1 identified by similarity to OMNI:NTL01RS2515; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_009715.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_009717.1 identified by match to protein family HMM PF00266 YP_009718.1 identified by similarity to OMNI:NTL03PA00355 YP_009719.1 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_009721.1 identified by similarity to OMNI:AF1263; match to protein family HMM PF00037 YP_009722.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_009723.1 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_009724.1 identified by similarity to OMNI:NT01MC0824 YP_009726.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_009727.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_009728.1 identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_009729.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_009730.1 identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456 YP_009731.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_009732.1 identified by similarity to GP:642365 YP_009733.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_009734.1 identified by similarity to OMNI:SO1202; match to protein family HMM PF02576 YP_009735.1 identified by similarity to SP:P75939; match to protein family HMM PF00460 YP_009736.1 makes up the distal portion of the flagellar basal body rod YP_009737.1 identified by match to protein family HMM PF03240 YP_009738.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_009739.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_009740.1 identified by similarity to SP:P75942; match to protein family HMM PF01551 YP_009742.1 identified by similarity to SP:P33235; match to protein family HMM PF00460 YP_009743.1 identified by match to protein family HMM PF00669; match to protein family HMM PF02012 YP_009744.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_009745.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_009746.1 identified by similarity to SP:P39809; match to protein family HMM PF04316 YP_009748.1 identified by match to protein family HMM PF01047 YP_009749.1 identified by similarity to OMNI:NTL02MA1611 YP_009750.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_009751.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_009752.1 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_009753.1 identified by similarity to SP:P33394; match to protein family HMM PF00072 YP_009754.1 identified by similarity to SP:P33393; match to protein family HMM PF02754 YP_009755.1 identified by similarity to SP:P33392 YP_009756.1 identified by similarity to SP:P33391 YP_009757.1 identified by similarity to SP:P33390; match to protein family HMM PF03916 YP_009758.1 identified by similarity to SP:P33389; match to protein family HMM PF00037; match to protein family HMM TIGR01409 YP_009759.1 identified by similarity to SP:P24092; match to protein family HMM PF02085 YP_009761.1 identified by match to protein family HMM PF01261 YP_009762.1 identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_009763.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009765.1 identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582 YP_009768.1 identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582 YP_009770.1 identified by match to protein family HMM PF01094 YP_009771.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_009772.1 identified by similarity to SP:P21628; match to protein family HMM PF02653 YP_009773.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_009774.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_009775.1 identified by similarity to GP:14250952; match to protein family HMM PF00535 YP_009777.1 identified by match to protein family HMM PF01370 YP_009779.1 identified by similarity to GP:14286345; match to protein family HMM PF01527 YP_009782.2 identified by similarity to OMNI:MT0861 YP_009783.1 identified by match to protein family HMM PF00534 YP_009784.1 identified by similarity to GP:2645860; match to protein family HMM PF01527 YP_009785.1 identified by similarity to GP:2645861; match to protein family HMM PF00665 YP_009786.1 identified by similarity to OMNI:SO3543 YP_009787.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_009788.1 identified by match to protein family HMM PF01590 YP_009789.1 identified by match to protein family HMM PF03741 YP_009790.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_009791.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_009793.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_009795.1 identified by similarity to SP:P08367 YP_009798.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_009799.1 identified by similarity to SP:P44452 YP_009800.1 identified by match to protein family HMM PF02634 YP_009801.1 identified by similarity to SP:O31701 YP_009802.1 identified by similarity to SP:Q44118; match to protein family HMM PF04055 YP_009803.1 identified by match to protein family HMM PF00072 YP_009804.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009805.1 identified by match to protein family HMM PF01094 YP_009806.1 identified by similarity to OMNI:NTL01NM00438 YP_009807.1 identified by similarity to OMNI:NTL01PF1838 YP_009809.1 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_009810.1 identified by similarity to SP:P32175 YP_009811.1 identified by match to protein family HMM PF03205; match to protein family HMM PF04060 YP_009813.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009814.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_009815.1 identified by match to protein family HMM PF01810 YP_009816.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_009817.1 identified by similarity to OMNI:AF0913 YP_009818.1 identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_009819.1 identified by similarity to GP:862312; match to protein family HMM PF02518 YP_009820.1 identified by match to protein family HMM PF02554 YP_009821.1 identified by match to protein family HMM PF02554 YP_009822.1 identified by similarity to SP:P00345; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_009823.1 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_009828.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01209 YP_009829.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_009830.1 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_009831.1 identified by similarity to OMNI:NTL01SM01830 YP_009832.1 identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470 YP_009833.1 identified by similarity to GP:21109946; match to protein family HMM PF00005 YP_009834.1 identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_009841.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_009842.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_009843.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_009844.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009846.1 identified by similarity to SP:P33226 YP_009847.1 identified by similarity to GP:5748660; match to protein family HMM PF02335 YP_009848.1 identified by similarity to SP:P37252; match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_009849.1 identified by similarity to GP:457633; match to protein family HMM PF01515 YP_009850.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_009851.1 identified by match to protein family HMM PF00440 YP_009853.1 identified by similarity to GP:14041200 YP_009854.1 identified by match to protein family HMM PF00190 YP_009855.1 identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_009857.1 identified by match to protein family HMM PF02366 YP_009858.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009859.1 identified by similarity to OMNI:NTL01PH00308 YP_009860.1 identified by similarity to OMNI:CT0045 YP_009861.1 identified by similarity to GP:2130949; match to protein family HMM PF00691 YP_009862.1 identified by similarity to SP:O06873; match to protein family HMM PF01618 YP_009863.1 identified by similarity to OMNI:TM0735 YP_009864.1 identified by similarity to GP:2935027; match to protein family HMM PF00561 YP_009865.1 identified by similarity to SP:P30138; match to protein family HMM PF00899 YP_009867.1 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_009868.1 identified by similarity to SP:Q05593; match to protein family HMM PF00590; match to protein family HMM TIGR01467 YP_009869.1 identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497 YP_009870.1 identified by similarity to SP:P07821; match to protein family HMM PF00005 YP_009871.1 identified by similarity to PIR:S54438; match to protein family HMM PF01032 YP_009872.1 identified by similarity to SP:Q05592; match to protein family HMM PF06180 YP_009874.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_009875.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_009876.1 identified by match to protein family HMM PF01136 YP_009877.1 identified by match to protein family HMM PF02231 YP_009878.1 identified by similarity to OMNI:NTL02SC2888; match to protein family HMM PF03966 YP_009879.1 identified by match to protein family HMM PF00011 YP_009880.1 identified by match to protein family HMM PF00011 YP_009882.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_009883.1 identified by match to protein family HMM PF01207 YP_009884.1 identified by similarity to SP:Q59967; match to protein family HMM PF00132 YP_009885.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_009886.1 identified by similarity to SP:O54055; match to protein family HMM PF00266 YP_009887.1 identified by similarity to SP:P20628; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324 YP_009888.1 identified by match to protein family HMM PF01966 YP_009889.1 identified by match to protein family HMM PF01966 YP_009890.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_009892.1 identified by match to protein family HMM PF04932 YP_009893.1 identified by similarity to OMNI:TM1058 YP_009896.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009897.1 identified by match to protein family HMM PF00497 YP_009898.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009899.1 identified by similarity to SP:P41052 YP_009901.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_009902.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009903.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009905.1 identified by similarity to SP:P25661; match to protein family HMM PF01145 YP_009906.1 identified by similarity to SP:P25662; match to protein family HMM PF01145 YP_009907.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_009908.1 identified by match to protein family HMM PF00037 YP_009909.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_009911.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_009912.1 identified by similarity to GP:28809584 YP_009914.1 identified by similarity to SP:P37180 YP_009915.1 identified by similarity to SP:P31076; match to protein family HMM PF00037 YP_009916.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409 YP_009919.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479 YP_009920.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_009921.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_009922.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_009923.1 identified by similarity to SP:Q57142 YP_009924.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_009925.1 identified by similarity to SP:P26844; match to protein family HMM PF00461 YP_009926.1 identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786 YP_009927.1 identified by match to protein family HMM PF04290 YP_009928.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_009931.1 identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_009933.1 identified by match to protein family HMM PF01094 YP_009934.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_009935.1 identified by match to protein family HMM PF02653 YP_009936.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_009937.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_009938.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009939.1 identified by match to protein family HMM PF01527 YP_009940.1 identified by match to protein family HMM PF00665 YP_009941.1 identified by match to protein family HMM PF00672 YP_009942.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009943.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_009944.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_009945.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_009946.1 identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190 YP_009947.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_009948.1 identified by similarity to OMNI:NTL02AT2357; match to protein family HMM TIGR02117 YP_009951.1 identified by similarity to OMNI:NTL01TT1685 YP_009953.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_009954.1 identified by similarity to OMNI:NTL02MA2200 YP_009955.1 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469 YP_009956.1 identified by match to protein family HMM PF03473 YP_009957.1 identified by similarity to SP:P08179; match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_009958.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009959.1 identified by match to protein family HMM PF01094 YP_009960.1 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296 YP_009964.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_009965.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_009966.1 identified by similarity to GP:14330288; match to protein family HMM PF01547 YP_009967.1 identified by similarity to GP:20906056; match to protein family HMM PF00528 YP_009968.1 identified by similarity to OMNI:CC1598; match to protein family HMM PF00005 YP_009969.1 identified by similarity to SP:P27095; match to protein family HMM PF00501 YP_009970.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_009971.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_009972.1 identified by similarity to OMNI:NTL03PA02202; similarity to OMNI:NTL03PA04194; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_009973.1 identified by match to protein family HMM PF00497 YP_009974.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_009976.1 identified by match to protein family HMM PF02518 YP_009977.1 identified by match to protein family HMM PF00515 YP_009980.1 identified by match to protein family HMM PF02073 YP_009983.1 identified by similarity to SP:Q8XBS4 YP_009984.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_009985.2 identified by similarity to SP:P02341; similarity to SP:P02346; similarity to SP:P08821; similarity to SP:P15148; match to protein family HMM PF00216 YP_009986.1 identified by similarity to SP:Q44472; match to protein family HMM PF05161 YP_009987.1 identified by match to protein family HMM PF04972 YP_009988.1 identified by match to protein family HMM PF00266 YP_009989.1 identified by similarity to SP:P94556; match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_009990.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_009991.1 identified by match to protein family HMM PF01925 YP_009992.1 identified by similarity to SP:P46930; similarity to OMNI:BR2031; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_009995.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_009996.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_009997.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_009998.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_009999.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_010000.1 identified by similarity to SP:P20601; match to protein family HMM PF00430 YP_010001.1 identified by match to protein family HMM PF00430 YP_010005.1 identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519 YP_010006.1 identified by similarity to SP:P15035; match to protein family HMM PF01098 YP_010007.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_010009.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_010010.1 functions in MreBCD complex in some organisms YP_010011.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_010012.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_010015.1 identified by similarity to SP:P29132; match to protein family HMM PF00106 YP_010016.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_010017.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_010018.1 identified by similarity to GP:21899254 YP_010020.1 identified by similarity to GP:21899254 YP_010022.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_010024.1 identified by similarity to GP:21107427; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_010025.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_010027.1 identified by similarity to GP:3493638; match to protein family HMM PF00072 YP_010028.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 YP_010029.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_010030.1 identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135 YP_010032.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_010033.1 identified by similarity to SP:P15874; match to protein family HMM PF01025 YP_010034.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331 YP_010035.2 identified by similarity to SP:P23480; match to protein family HMM PF00578 YP_010036.1 identified by similarity to SP:P28249; match to protein family HMM PF05170 YP_010037.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_010039.1 identified by similarity to GP:27359550 YP_010040.1 identified by match to protein family HMM PF03358 YP_010042.1 identified by similarity to OMNI:NT01MC2073 YP_010044.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_010046.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_010047.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_010048.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_010049.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_010050.1 identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM TIGR01417 YP_010051.1 identified by similarity to SP:P07006; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_010052.1 identified by similarity to SP:P26382 YP_010053.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_010054.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_010055.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_010056.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_010057.1 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_010058.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239 YP_010059.1 identified by similarity to SP:Q8XJP5 YP_010060.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_010061.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_010062.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_010067.1 identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060 YP_010068.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_010069.1 identified by similarity to GP:1890204 YP_010070.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02662 YP_010071.1 identified by match to protein family HMM PF00037 YP_010074.1 identified by similarity to OMNI:NTL02SC3149; match to protein family HMM PF01139 YP_010075.1 identified by similarity to SP:Q52522 YP_010076.1 identified by match to protein family HMM PF04055 YP_010077.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_010078.1 identified by match to protein family HMM PF04055 YP_010082.1 identified by match to protein family HMM PF00534 YP_010083.1 identified by similarity to SP:P26608; match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_010084.1 identified by similarity to SP:P24216; match to protein family HMM PF02465 YP_010085.1 identified by match to protein family HMM PF00814 YP_010086.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_010087.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_010088.1 identified by similarity to GP:6900962; match to protein family HMM PF00282 YP_010089.1 identified by match to protein family HMM PF01148 YP_010090.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_010091.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_010092.1 Catalyzes the phosphorylation of UMP to UDP YP_010093.1 identified by similarity to GP:19423800; match to protein family HMM PF00535 YP_010094.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_010095.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_010096.1 identified by match to protein family HMM PF01557 YP_010097.1 identified by match to protein family HMM PF00753 YP_010099.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_010102.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_010104.1 identified by match to protein family HMM PF00462 YP_010105.1 identified by similarity to GP:2649026 YP_010106.1 identified by match to protein family HMM PF04909 YP_010107.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_010108.1 identified by similarity to OMNI:PP4971; match to protein family HMM PF03562 YP_010109.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_010110.1 identified by match to protein family HMM PF01676 YP_010111.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_010112.1 identified by match to protein family HMM PF00155 YP_010113.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_010114.1 identified by match to protein family HMM PF00582 YP_010115.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_010116.1 identified by match to protein family HMM TIGR01448 YP_010117.1 identified by match to protein family HMM PF00877 YP_010118.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089 YP_010119.1 identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255 YP_010120.1 identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025 YP_010121.1 identified by similarity to SP:P24234; match to protein family HMM PF00625 YP_010122.1 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_010123.1 identified by match to protein family HMM PF00515 YP_010124.1 identified by similarity to GP:21107347; match to protein family HMM PF01966 YP_010125.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_010126.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_010127.1 identified by similarity to SP:P30976; match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_010128.1 identified by similarity to OMNI:NTL01BM0443 YP_010131.1 identified by similarity to SP:P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_010132.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_010134.1 identified by similarity to OMNI:TM0512 YP_010135.1 identified by similarity to SP:P36561; match to protein family HMM PF02654 YP_010136.1 identified by similarity to OMNI:CT1550; match to protein family HMM PF01887 YP_010137.1 modulates transcription in response to the NADH/NAD(+) redox state YP_010138.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260 YP_010139.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131 YP_010141.1 identified by similarity to SP:P15011 YP_010142.1 identified by similarity to GP:435265 YP_010144.1 identified by match to protein family HMM PF01042 YP_010145.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_010146.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_010148.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_010149.1 involved in the peptidyltransferase reaction during translation YP_010150.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_010151.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_010152.1 identified by match to protein family HMM TIGR00097 YP_010153.1 identified by match to protein family HMM PF02518 YP_010154.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_010156.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_010160.1 identified by similarity to GP:6978033 YP_010161.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_010162.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_010163.1 identified by match to protein family HMM PF01475 YP_010166.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_010167.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_010168.1 identified by match to protein family HMM PF00892 YP_010170.1 identified by similarity to OMNI:NMB1475 YP_010172.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_010173.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_010174.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_010175.1 identified by similarity to SP:P31554 YP_010176.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_010177.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_010178.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_010179.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_010180.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_010182.1 identified by similarity to OMNI:NTL01RS0896 YP_010184.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_010185.1 identified by match to protein family HMM PF00208 YP_010187.1 identified by match to protein family HMM PF00497 YP_010188.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_010189.1 identified by match to protein family HMM PF00005 YP_010190.1 identified by similarity to OMNI:CC0456; match to protein family HMM PF01810 YP_010192.2 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_010193.1 identified by match to protein family HMM PF01966 YP_010194.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475 YP_010196.1 identified by similarity to SP:P26650; match to protein family HMM PF04751 YP_010197.1 identified by match to protein family HMM PF00072 YP_010199.1 identified by similarity to GP:14330288 YP_010200.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_010201.1 identified by match to protein family HMM PF02734 YP_010202.1 identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_010203.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_010204.1 identified by similarity to SP:Q50604; match to protein family HMM PF02577 YP_010205.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_010208.1 identified by match to protein family HMM PF00403 YP_010209.1 identified by match to protein family HMM PF00294 YP_010210.1 identified by similarity to SP:P36654; match to protein family HMM PF03091 YP_010211.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_010212.1 identified by similarity to OMNI:NTL01MM1967 YP_010213.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_010216.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_010218.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_010219.1 identified by match to protein family HMM PF01075 YP_010220.1 identified by similarity to SP:P36655; match to protein family HMM PF02683 YP_010221.1 identified by match to protein family HMM PF00557 YP_010222.1 identified by match to protein family HMM PF02629 YP_010223.1 identified by match to protein family HMM PF03692 YP_010224.1 identified by match to protein family HMM PF00226 YP_010225.1 identified by similarity to OMNI:NTL01PH00071; match to protein family HMM PF00892 YP_010228.1 identified by similarity to SP:P29931; match to protein family HMM PF02283 YP_010233.1 identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612 YP_010234.1 identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_010238.1 identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_010239.2 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_010240.1 identified by similarity to OMNI:VCA1081 YP_010241.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229 YP_010242.1 identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458 YP_010243.1 identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_010244.1 identified by similarity to OMNI:NTL01TT0367; match to protein family HMM PF01694 YP_010245.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01121; match to protein family HMM PF01479; match to protein family HMM TIGR00005; match to protein family HMM TIGR00152 YP_010246.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_010247.1 identified by similarity to SP:P39766; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_010249.1 identified by similarity to SP:P23863; match to protein family HMM PF02224; match to protein family HMM TIGR00017 YP_010250.1 identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_010251.1 identified by match to protein family HMM PF00582 YP_010254.1 identified by similarity to SP:P46323; match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_010258.1 identified by similarity to SP:P16171; match to protein family HMM PF00070; match to protein family HMM PF02852 YP_010259.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_010261.2 identified by similarity to SP:O34683; match to protein family HMM PF00475 YP_010262.1 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_010263.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_010264.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_010265.1 identified by similarity to SP:P50099; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_010268.1 identified by similarity to SP:P33929; match to protein family HMM PF01578 YP_010270.1 identified by similarity to SP:P46903; match to protein family HMM PF00005 YP_010271.1 identified by match to protein family HMM PF01578 YP_010273.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595 YP_010275.1 identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_010276.1 identified by match to protein family HMM PF01075 YP_010277.1 identified by similarity to OMNI:BR1368; match to protein family HMM PF00005 YP_010278.1 identified by similarity to OMNI:BR1367; match to protein family HMM PF02361 YP_010279.1 catalyzes the ATP-dependent transport of cobalt YP_010281.1 identified by match to protein family HMM PF00534 YP_010282.1 identified by similarity to SP:P71243; match to protein family HMM PF00534 YP_010283.1 identified by similarity to OMNI:NTL01SS02998 YP_010284.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_010285.1 Catalyzes the conversion of citrate to isocitrate YP_010286.1 identified by match to protein family HMM PF00639 YP_010287.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_010288.1 identified by match to protein family HMM PF02608 YP_010289.1 identified by match to protein family HMM PF02653 YP_010290.1 identified by match to protein family HMM PF02653 YP_010291.2 identified by match to protein family HMM PF00005 YP_010293.1 identified by similarity to OMNI:BR1366 YP_010294.1 identified by similarity to OMNI:NT01MC2073 YP_010295.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_010296.1 identified by similarity to SP:P58031; match to protein family HMM TIGR00188 YP_010297.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_010298.1 identified by match to protein family HMM PF02096 YP_010299.1 identified by match to protein family HMM PF01424 YP_010300.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_010301.1 identified by match to protein family HMM PF00037 YP_010302.1 identified by match to protein family HMM PF00037 YP_010303.1 identified by match to protein family HMM PF01612 YP_010304.1 identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_010305.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_010306.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_010308.1 identified by similarity to GP:2342730 YP_010310.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_010311.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_010312.1 identified by similarity to OMNI:NTL03CP2210 YP_010313.1 identified by similarity to SP:P45320; match to protein family HMM PF00209 YP_010315.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_010316.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_010317.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_010318.1 identified by similarity to OMNI:NTL01MM2648 YP_010319.1 identified by match to protein family HMM PF01555 YP_010324.1 identified by match to protein family HMM PF04965 YP_010328.1 identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760 YP_010330.1 identified by match to protein family HMM PF00991 YP_010335.1 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635 YP_010339.1 identified by similarity to OMNI:NTL03ST1420 YP_010340.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_010341.1 identified by similarity to OMNI:NTL03ST1417 YP_010344.1 identified by similarity to GP:1772508 YP_010346.1 identified by similarity to GP:5531665 YP_010349.1 identified by match to protein family HMM PF01464 YP_010350.1 identified by similarity to OMNI:NTL03ST1409 YP_010353.1 identified by similarity to OMNI:NMB0985 YP_010355.1 identified by similarity to SP:P02346; match to protein family HMM PF00216 YP_010356.1 identified by similarity to GP:14277814 YP_010357.1 identified by similarity to SP:P06023 YP_010360.1 identified by similarity to GP:974770 YP_010361.1 identified by similarity to SP:P07636 YP_010365.1 identified by match to protein family HMM PF00717 YP_010367.1 identified by similarity to GP:1245347; match to protein family HMM PF03062 YP_010368.1 identified by similarity to GP:28202763 YP_010369.1 identified by similarity to OMNI:NTL01YP0371 YP_010375.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_010376.1 identified by match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_010379.1 identified by similarity to SP:Q13336; match to protein family HMM PF03253 YP_010382.1 identified by match to protein family HMM PF00083 YP_010383.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate YP_010384.1 identified by match to protein family HMM PF00070 YP_010388.1 identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_010392.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_010398.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_010400.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_010402.2 identified by match to protein family HMM PF01966 YP_010404.1 identified by match to protein family HMM PF02674 YP_010405.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_010408.1 identified by similarity to OMNI:VC0624; match to protein family HMM PF01594 YP_010409.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_010410.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; match to protein family HMM TIGR01369 YP_010411.1 identified by match to protein family HMM PF00708 YP_010412.1 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_010415.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_010416.1 identified by similarity to SP:P04381; match to protein family HMM PF01029 YP_010417.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_010418.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_010419.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_010420.1 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 YP_010421.1 identified by match to protein family HMM PF00383 YP_010422.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_010423.1 identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_010424.1 carries the fatty acid chain in fatty acid biosynthesis YP_010425.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_010426.1 identified by similarity to SP:P30790; match to protein family HMM TIGR00747 YP_010427.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_010428.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_010429.1 identified by similarity to GP:1491791; match to protein family HMM PF02620 YP_010430.1 required for 70S ribosome assembly YP_010431.1 identified by similarity to SP:P37147; match to protein family HMM PF04186 YP_010432.1 identified by match to protein family HMM PF01694 YP_010433.2 identified by match to protein family HMM PF02366 YP_010434.1 identified by match to protein family HMM PF01569 YP_010436.1 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_010437.1 identified by similarity to SP:Q58452; match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_010438.1 identified by similarity to GP:6724082 YP_010439.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00881 YP_010442.2 identified by similarity to SP:O27068; match to protein family HMM PF02624 YP_010443.1 identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_010447.1 identified by similarity to SP:P37901; match to protein family HMM PF00578 YP_010450.1 identified by similarity to SP:Q07429; match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_010451.1 identified by similarity to SP:P21193; match to protein family HMM PF00543 YP_010452.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966 YP_010453.1 identified by match to protein family HMM PF01925 YP_010455.1 identified by similarity to SP:Q52815; match to protein family HMM PF00005 YP_010456.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_010457.1 identified by similarity to SP:P30859; match to protein family HMM PF00497 YP_010458.1 identified by similarity to GP:5458792; match to protein family HMM PF03956 YP_010460.1 identified by similarity to OMNI:NTL01FN1126 YP_010461.1 identified by similarity to SP:P76506; match to protein family HMM PF04333 YP_010462.1 identified by similarity to GP:22799047 YP_010463.1 identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470 YP_010464.1 identified by similarity to SP:P45393; match to protein family HMM PF00005 YP_010465.1 identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_010467.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_010468.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_010469.1 identified by similarity to SP:P17113 YP_010473.1 identified by similarity to OMNI:NTL03SA0024; match to protein family HMM PF02590 YP_010474.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_010475.1 identified by match to protein family HMM PF01075 YP_010476.1 identified by match to protein family HMM PF00076 YP_010477.1 identified by similarity to GP:9651982; match to protein family HMM PF00120 YP_010479.1 identified by similarity to GP:9716643; match to protein family HMM PF03349 YP_010480.1 identified by similarity to SP:P45754 YP_010481.1 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_010482.1 identified by similarity to SP:P31712; similarity to SP:Q46836 YP_010483.1 identified by match to protein family HMM PF01464 YP_010489.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_010490.1 identified by similarity to GP:4139238; match to protein family HMM PF00482 YP_010491.1 identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_010492.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958 YP_010497.1 identified by similarity to GP:5531227; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241 YP_010498.1 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_010499.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_010500.1 identified by similarity to OMNI:NTL01TT2044 YP_010501.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_010502.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_010503.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR00595 YP_010504.1 identified by match to protein family HMM PF00072 YP_010505.1 identified by match to protein family HMM PF03916 YP_010506.1 identified by match to protein family HMM PF00037 YP_010507.1 identified by similarity to OMNI:AF0503 YP_010508.1 identified by match to protein family HMM PF00037 YP_010509.1 identified by match to protein family HMM PF02665 YP_010513.1 identified by similarity to OMNI:CT0704; match to protein family HMM PF01863 YP_010514.1 identified by similarity to SP:P56864; match to protein family HMM PF01747; match to protein family HMM TIGR00339 YP_010517.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_010518.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_010519.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_010521.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_010522.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_010523.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_010524.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_010525.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_010526.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_010527.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_010528.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_010529.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_010530.1 one of the stabilizing components for the large ribosomal subunit YP_010531.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_010532.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_010533.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_010534.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_010535.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_010536.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_010537.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_010538.1 binds 5S rRNA along with protein L5 and L25 YP_010539.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_010540.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_010541.1 late assembly protein YP_010542.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_010543.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_010544.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_010545.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_010546.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_010547.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_010548.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_010549.1 is a component of the macrolide binding site in the peptidyl transferase center YP_010550.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_010551.1 selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_010553.1 identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 YP_010554.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_010555.1 binds and unfolds substrates as part of the ClpXP protease YP_010556.1 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_010557.1 identified by similarity to OMNI:SO3257 YP_010560.1 identified by similarity to GP:5019735; match to protein family HMM PF00950 YP_010561.1 identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005 YP_010562.1 identified by match to protein family HMM PF01297 YP_010563.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_010564.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_010565.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 YP_010566.1 identified by match to protein family HMM PF01551 YP_010567.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_010568.1 identified by similarity to GP:5631295; match to protein family HMM PF00348 YP_010569.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_010570.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_010571.1 identified by match to protein family HMM PF01242 YP_010572.1 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594 YP_010575.1 identified by match to protein family HMM PF01966 YP_010576.1 identified by similarity to OMNI:NTL01TT0547 YP_010577.1 identified by match to protein family HMM PF00702 YP_010579.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179 YP_010580.1 identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215 YP_010582.1 identified by match to protein family HMM PF04321; match to protein family HMM TIGR01214 YP_010583.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181 YP_010584.1 identified by similarity to SP:Q05592; match to protein family HMM PF06180 YP_010586.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_010587.1 identified by match to protein family HMM PF00581 YP_010590.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_010591.1 identified by similarity to OMNI:NTL01CJ00797; match to protein family HMM PF02325 YP_010592.1 identified by similarity to OMNI:NTL01BS1543; match to protein family HMM PF05103 YP_010593.1 identified by similarity to OMNI:NT01MC2722; match to protein family HMM PF02594 YP_010595.1 identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_010596.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_010597.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_010601.1 selenoprotein; identified by match to protein family HMM PF01521 YP_010603.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_010606.1 identified by similarity to OMNI:NTL01CJ01237 YP_010607.1 identified by similarity to OMNI:SO1143 YP_010611.1 identified by match to protein family HMM PF00877 YP_010614.1 identified by match to protein family HMM PF01258 YP_010615.1 identified by similarity to OMNI:NTL02MT00799 YP_010616.1 identified by similarity to GP:14326006; match to protein family HMM PF00210 YP_010617.1 identified by match to protein family HMM PF00665 YP_010618.1 identified by match to protein family HMM PF01527 YP_010619.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_010620.1 identified by match to protein family HMM PF03547 YP_010621.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_010623.1 identified by match to protein family HMM PF04055 YP_010625.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_010626.1 identified by match to protein family HMM PF04055 YP_010629.1 identified by similarity to OMNI:NT01MC3424 YP_010630.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_010631.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor YP_010632.1 identified by similarity to GP:3128261 YP_010633.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_010634.1 identified by match to protein family HMM PF05170 YP_010637.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_010638.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_010639.1 identified by match to protein family HMM PF01627 YP_010641.1 identified by match to protein family HMM PF00691 YP_010642.1 identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852 YP_010643.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_010644.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_010645.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_010646.1 identified by match to protein family HMM PF00072 YP_010647.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_010648.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_010649.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_010650.1 identified by match to protein family HMM PF01627; match to protein family HMM PF01740 YP_010651.1 identified by match to protein family HMM PF04055 YP_010654.1 identified by similarity to OMNI:NTL03PA01784 YP_010657.1 identified by match to protein family HMM PF01656 YP_010659.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_010660.1 identified by similarity to SP:P21990; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_010661.1 identified by similarity to GP:2384651 YP_010662.1 identified by similarity to SP:O07884; match to protein family HMM PF00460 YP_010663.1 identified by similarity to SP:P16321; match to protein family HMM PF03963 YP_010664.1 identified by match to protein family HMM PF02120 YP_010665.1 identified by match to protein family HMM PF01075 YP_010667.1 identified by similarity to OMNI:TM0735; match to protein family HMM PF03961 YP_010668.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_010669.1 identified by similarity to SP:P70878; match to protein family HMM PF02518 YP_010670.1 identified by match to protein family HMM PF00072 YP_010671.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_010672.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_010673.1 identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453 YP_010674.1 identified by similarity to OMNI:NTL01CJ00668; match to protein family HMM PF02591 YP_010675.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_010676.1 identified by similarity to SP:Q05741; match to protein family HMM PF00070 YP_010677.2 identified by similarity to SP:P07800 YP_010678.1 identified by match to protein family HMM PF01171 YP_010680.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_010681.1 identified by match to protein family HMM PF01578 YP_010682.1 identified by match to protein family HMM TIGR01470 YP_010683.1 identified by match to protein family HMM PF01075 YP_010685.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_010686.1 heat shock protein involved in degradation of misfolded proteins YP_010687.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_010688.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_010689.1 identified by similarity to SP:P39159; match to protein family HMM PF00639 YP_010690.2 identified by match to protein family HMM PF00011 YP_010691.2 identified by match to protein family HMM PF05362 YP_010694.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_010698.1 identified by similarity to GP:15025573 YP_010699.1 identified by similarity to OMNI:NTL01MM2929 YP_010700.1 identified by match to protein family HMM PF00565 YP_010710.1 identified by similarity to OMNI:NTL01PF1323 YP_010716.1 identified by match to protein family HMM TIGR01563 YP_010717.1 identified by similarity to GP:17484030 YP_010719.1 identified by match to protein family HMM TIGR01554 YP_010720.1 identified by match to protein family HMM PF00574 YP_010721.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_010722.1 identified by match to protein family HMM PF03354 YP_010723.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_010724.1 identified by match to protein family HMM PF01844 YP_010727.1 identified by similarity to GP:27550078 YP_010728.1 identified by similarity to GP:21913207 YP_010732.1 identified by similarity to GP:21202981 YP_010734.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_010737.1 identified by match to protein family HMM PF01381 YP_010738.1 identified by match to protein family HMM PF00717 YP_010743.1 identified by similarity to GP:13491641 YP_010744.1 identified by similarity to OMNI:NTL02MA1432 YP_010746.1 identified by match to protein family HMM PF00589 YP_010747.1 identified by match to protein family HMM PF00383 YP_010748.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_010749.1 identified by match to protein family HMM PF00753 YP_010750.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_010751.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_010752.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_010753.1 identified by similarity to OMNI:NTL01TV0482; match to protein family HMM PF04143 YP_010754.1 identified by similarity to OMNI:NTL01TT0071 YP_010755.1 identified by match to protein family HMM PF01464 YP_010756.1 identified by match to protein family HMM PF03938 YP_010758.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_010759.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_010762.1 identified by similarity to SP:P37024; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 YP_010763.1 identified by similarity to SP:P77338; match to protein family HMM PF00924 YP_010764.1 identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612 YP_010766.1 identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_010767.1 identified by match to protein family HMM PF03349 YP_010768.1 identified by similarity to OMNI:NTL01SS00054 YP_010769.1 identified by match to protein family HMM PF00300 YP_010770.1 identified by match to protein family HMM PF01966 YP_010771.1 identified by similarity to OMNI:NTL02SC5917; match to protein family HMM PF02625 YP_010773.1 identified by match to protein family HMM PF04055 YP_010777.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_010778.1 identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738 YP_010779.1 identified by match to protein family HMM PF00994 YP_010780.1 identified by match to protein family HMM PF02573 YP_010781.1 identified by match to protein family HMM PF00672 YP_010782.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_010785.1 identified by match to protein family HMM PF01507 YP_010787.1 identified by similarity to SP:P23887; match to protein family HMM PF00210 YP_010788.1 identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855 YP_010789.1 identified by similarity to GP:1565184 YP_010790.2 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_010791.1 identified by match to protein family HMM PF02559 YP_010792.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_010793.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_010794.1 identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_010795.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_010796.1 heat shock protein involved in degradation of misfolded proteins YP_010797.1 identified by match to protein family HMM PF01435 YP_010798.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_010799.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_010802.1 identified by match to protein family HMM PF00515 YP_010803.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_010804.1 identified by similarity to SP:P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_010805.1 identified by similarity to SP:P36893 YP_010806.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_010807.1 identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_010809.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_010812.1 identified by similarity to GP:510670; match to protein family HMM PF00072 YP_010813.1 identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_010814.2 identified by similarity to SP:P07801; match to protein family HMM PF01739; match to protein family HMM PF03705 YP_010815.1 identified by similarity to SP:P04042; match to protein family HMM PF00072; match to protein family HMM PF01339 YP_010816.1 identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_010817.1 identified by similarity to SP:Q9FC38; match to protein family HMM PF02641 YP_010818.1 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494 YP_010819.1 identified by match to protein family HMM PF01928 YP_010820.1 identified by similarity to SP:Q9JV14; match to protein family HMM PF02617 YP_010821.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_010822.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_010824.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_010825.1 identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_010827.1 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_010828.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_010829.1 identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_010830.1 identified by match to protein family HMM PF00384; match to protein family HMM PF04879 YP_010831.1 identified by match to protein family HMM PF01842 YP_010832.2 unknown function; probable involvement in glutamate synthesis YP_010833.1 identified by similarity to SP:P30132; match to protein family HMM PF00037 YP_010834.1 identified by similarity to SP:P76085 YP_010836.1 identified by match to protein family HMM PF00881 YP_010837.1 identified by similarity to GP:15158001; match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_010838.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_010842.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_010843.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_010844.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_010846.1 identified by similarity to OMNI:DR2134; match to protein family HMM PF00005 YP_010847.1 identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 YP_010848.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_010849.1 identified by match to protein family HMM PF00359 YP_010850.1 identified by similarity to SP:O06973; match to protein family HMM PF03668 YP_010851.1 identified by similarity to OMNI:BR2094; match to protein family HMM PF03610 YP_010852.1 identified by similarity to SP:P42909; match to protein family HMM PF03830 YP_010855.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_010860.1 identified by similarity to SP:P51732 YP_010862.1 identified by match to protein family HMM PF03773 YP_010863.1 identified by match to protein family HMM PF01022 YP_010864.1 identified by similarity to SP:P45947; match to protein family HMM PF01451 YP_010865.1 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_010867.1 This protein performs the mismatch recognition step during the DNA repair process YP_010868.1 identified by similarity to SP:P45576 YP_010869.1 identified by similarity to OMNI:NTL01SM00387 YP_010870.1 identified by match to protein family HMM PF01230 YP_010871.1 identified by similarity to SP:P42977; match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272 YP_010872.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_010873.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis YP_010874.1 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_010876.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_010878.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_010880.1 identified by match to protein family HMM PF03739 YP_010881.1 identified by match to protein family HMM PF03739 YP_010882.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_010883.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_010884.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_010885.1 identified by match to protein family HMM PF01580 YP_010886.1 identified by similarity to SP:P39178; match to protein family HMM PF03548 YP_010887.2 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_010888.1 identified by similarity to OMNI:NTL03CP2236 YP_010889.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_010890.1 identified by similarity to OMNI:NTL01FN1845; match to protein family HMM PF04028 YP_010892.1 identified by similarity to SP:Q37906; match to protein family HMM PF00717 YP_010894.1 identified by similarity to SP:P33582; match to protein family HMM PF03840 YP_010895.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_010896.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_010897.1 identified by match to protein family HMM PF00293 YP_010898.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_010899.1 identified by similarity to SP:P13519; match to protein family HMM TIGR00904 YP_010900.1 identified by match to protein family HMM PF01590 YP_010902.2 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_010903.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_010904.1 identified by match to protein family HMM PF00004 YP_010905.1 identified by match to protein family HMM PF00535 YP_010906.1 identified by match to protein family HMM PF01553 YP_010908.1 identified by match to protein family HMM PF00440 YP_010911.1 identified by similarity to SP:P22250; match to protein family HMM PF00749 YP_010912.1 identified by match to protein family HMM PF01258 YP_010918.1 identified by match to protein family HMM PF00753 YP_010920.1 identified by similarity to GP:21114108; match to protein family HMM PF01863 YP_010921.1 identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348 YP_010922.1 identified by similarity to OMNI:SAG0550 YP_010923.2 identified by match to protein family HMM PF01420 YP_010926.1 identified by similarity to OMNI:NTL01XC0464 YP_010927.1 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497 YP_010928.1 identified by similarity to GP:21114103 YP_010932.1 identified by similarity to GP:13186158 YP_010943.1 identified by similarity to GP:13346844 YP_010946.1 identified by similarity to GP:16506030 YP_010947.1 identified by similarity to GP:21203107; match to protein family HMM PF05015 YP_010948.1 identified by match to protein family HMM PF01381 YP_010955.1 identified by similarity to GP:12580916 YP_010956.1 identified by match to protein family HMM PF00589 YP_010960.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552 YP_010962.1 identified by match to protein family HMM PF01381 YP_010963.1 identified by match to protein family HMM PF01381 YP_010964.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_010965.1 identified by match to protein family HMM PF02518; match to protein family HMM TIGR01369 YP_010975.1 identified by match to protein family HMM PF00589 YP_010977.1 identified by match to protein family HMM PF02573 YP_010978.1 identified by match to protein family HMM PF00440 YP_010980.1 identified by similarity to OMNI:VCA1051; match to protein family HMM PF03733 YP_010982.1 identified by similarity to OMNI:NTL01TT1482 YP_010983.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_010984.1 catalyzes the formation of fumarate from aspartate YP_010985.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_010986.1 identified by match to protein family HMM TIGR00231 YP_010987.1 identified by similarity to SP:P07598; match to protein family HMM PF00037; match to protein family HMM PF02906 YP_010988.1 identified by similarity to SP:P07603; match to protein family HMM PF02256; match to protein family HMM TIGR01409 YP_010989.1 identified by similarity to GP:40828; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906 YP_010990.1 identified by match to protein family HMM PF00070 YP_010993.1 DHBP synthase; functions during riboflavin biosynthesis YP_010995.1 identified by similarity to SP:P17582; match to protein family HMM PF00484 YP_010996.1 identified by similarity to OMNI:CT0538; match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_010998.1 identified by similarity to OMNI:NTL01XC1623 YP_010999.1 identified by similarity to OMNI:NTL01NM01533; match to protein family HMM PF02589 YP_011000.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_011001.1 identified by match to protein family HMM PF02754 YP_011002.1 identified by match to protein family HMM PF00106 YP_011003.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_011004.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011005.1 identified by match to protein family HMM PF00565 YP_011006.1 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_011007.1 identified by similarity to SP:O33470; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_011008.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713 YP_011009.1 identified by match to protein family HMM PF02637 YP_011010.2 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_011013.1 identified by similarity to SP:P02341; similarity to SP:P28080; match to protein family HMM PF00216 YP_011015.2 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_011016.1 identified by similarity to OMNI:NTL01TE0138 YP_011017.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_011020.1 identified by similarity to OMNI:NTL01RS2082 YP_011021.1 identified by match to protein family HMM PF00534 YP_011022.1 identified by match to protein family HMM PF00534 YP_011023.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011024.1 identified by similarity to OMNI:NTL03CP1240; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_011025.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_011026.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_011027.1 identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM TIGR00551 YP_011029.1 identified by similarity to SP:P24009; match to protein family HMM PF01040 YP_011030.1 identified by match to protein family HMM PF00116 YP_011032.1 identified by similarity to SP:P50677; match to protein family HMM PF00510 YP_011033.1 identified by match to protein family HMM PF00115 YP_011034.2 identified by similarity to GP:10185094 YP_011035.1 identified by similarity to SP:P04032; match to protein family HMM PF00034 YP_011036.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_011037.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_011038.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_011039.1 identified by similarity to OMNI:TM0394; match to protein family HMM PF01493 YP_011040.1 identified by similarity to OMNI:NTL01TT0760; match to protein family HMM PF00310 YP_011041.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01645 YP_011043.1 identified by match to protein family HMM PF01979 YP_011045.1 catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate YP_011046.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_011050.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896 YP_011051.2 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_011052.2 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_011053.1 identified by match to protein family HMM PF01743 YP_011054.1 identified by similarity to SP:Q50985; match to protein family HMM PF03696 YP_011055.1 identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_011056.1 identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_011057.1 identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_011058.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_011061.1 identified by match to protein family HMM PF04977 YP_011063.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_011064.1 identified by similarity to SP:Q57731 YP_011065.1 identified by similarity to OMNI:NTL03PA05518; match to protein family HMM PF00597 YP_011066.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_011067.1 identified by match to protein family HMM PF00571 YP_011068.1 identified by match to protein family HMM PF01551 YP_011069.1 identified by similarity to SP:Q10785 YP_011074.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_011075.1 identified by match to protein family HMM PF00313 YP_011077.1 Transfers the fatty acyl group on membrane lipoproteins YP_011078.1 identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_011079.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011080.1 identified by similarity to OMNI:NTL03PA01455 YP_011081.1 identified by similarity to SP:P08821; match to protein family HMM PF00216 YP_011084.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_011085.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_011086.1 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM TIGR00229 YP_011087.1 identified by match to protein family HMM PF04199 YP_011088.1 catalyzes the formation of fumarate from aspartate YP_011090.2 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_011091.1 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_011092.1 identified by similarity to SP:P77527 YP_011093.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF01556 YP_011094.1 identified by match to protein family HMM PF01522 YP_011095.1 identified by similarity to SP:O50584 YP_011096.1 identified by match to protein family HMM PF00534 YP_011098.1 identified by similarity to SP:P46343; match to protein family HMM PF02562 YP_011099.1 identified by similarity to OMNI:NTL01TT0909; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_011100.1 identified by similarity to SP:P71335; match to protein family HMM PF02130 YP_011101.1 identified by similarity to OMNI:VCA1056; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_011102.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_011105.1 identified by match to protein family HMM PF01513 YP_011106.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_011107.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_011108.1 identified by similarity to OMNI:NTL01NS1759; match to protein family HMM PF05143 YP_011109.1 identified by match to protein family HMM PF00535 YP_011110.1 identified by match to protein family HMM PF05362 YP_011112.1 identified by similarity to OMNI:NTL02MA0180; match to protein family HMM PF00083 YP_011113.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_011114.1 identified by match to protein family HMM PF02092; match to protein family HMM TIGR00211 YP_011115.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_011116.1 identified by match to protein family HMM PF02565 YP_011117.1 identified by similarity to OMNI:NTL03PA03804 YP_011118.1 identified by match to protein family HMM PF00639 YP_011119.1 identified by similarity to OMNI:NTL01YP0471 YP_011120.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_011121.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_011124.1 identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_011125.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_011126.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_011127.1 identified by similarity to GP:9105649; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196 YP_011128.1 identified by similarity to OMNI:NTL01TE1801; match to protein family HMM PF00571 YP_011129.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_011130.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_011131.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA YP_011134.1 identified by similarity to SP:P13063; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_011135.1 selenoprotein; identified by match to protein family HMM PF00374 YP_011136.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_011138.1 identified by similarity to SP:P21853; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_011139.1 identified by similarity to SP:P21852; match to protein family HMM PF00374 YP_011140.1 identified by similarity to SP:P31909; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140 YP_011141.1 identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_011142.1 identified by similarity to SP:Q07792; match to protein family HMM PF00657 YP_011143.1 identified by similarity to GP:3482869 YP_011144.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_011145.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_011148.1 identified by match to protein family HMM PF00037 YP_011149.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_011150.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_011151.1 identified by similarity to SP:P16683; match to protein family HMM PF00528 YP_011152.1 identified by similarity to SP:P16683; match to protein family HMM PF00528 YP_011153.1 identified by similarity to SP:P16677; match to protein family HMM PF00005 YP_011154.1 identified by similarity to SP:P16682 YP_011156.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters YP_011157.1 identified by similarity to SP:P13032; match to protein family HMM PF01266 YP_011158.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_011159.1 identified by match to protein family HMM PF02645; match to protein family HMM PF02734; match to protein family HMM TIGR00762 YP_011161.1 identified by match to protein family HMM PF00037 YP_011162.1 Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin YP_011163.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_011164.1 identified by match to protein family HMM PF01558 YP_011165.1 identified by similarity to GP:29541639 YP_011166.1 identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_011167.1 identified by similarity to SP:O07836; match to protein family HMM PF01558 YP_011168.1 identified by similarity to SP:O07835 YP_011170.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_011171.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_011172.1 identified by match to protein family HMM PF00515 YP_011173.1 identified by match to protein family HMM PF01075 YP_011175.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011176.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011177.1 identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_011178.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_011179.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_011181.1 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_011184.1 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_011187.1 identified by match to protein family HMM PF00072 YP_011188.1 identified by similarity to GP:5852329 YP_011190.1 identified by match to protein family HMM PF00581 YP_011191.1 identified by match to protein family HMM PF00070 YP_011192.1 identified by similarity to SP:P35841; match to protein family HMM PF00015 YP_011193.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_011194.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_011195.1 identified by similarity to OMNI:VCA0193; match to protein family HMM PF03553 YP_011196.1 identified by similarity to SP:P43672; match to protein family HMM PF00005 YP_011198.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_011199.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_011201.1 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_011203.1 identified by similarity to OMNI:MJ0989 YP_011204.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_011205.1 identified by match to protein family HMM PF04474 YP_011209.1 identified by similarity to SP:P50868; match to protein family HMM PF00132 YP_011210.1 identified by similarity to SP:Q10860; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_011212.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_011213.1 identified by similarity to GP:12024949; match to protein family HMM PF00893 YP_011216.1 identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_011219.1 identified by match to protein family HMM PF01609 YP_011220.1 identified by similarity to OMNI:SO3543; match to protein family HMM PF00665 YP_011223.1 identified by match to protein family HMM PF00565 YP_011225.1 identified by similarity to OMNI:SO4260 YP_011226.1 identified by match to protein family HMM PF00665 YP_011227.1 identified by similarity to GP:2645860; match to protein family HMM PF01527 YP_011229.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_011230.1 identified by match to protein family HMM PF00753 YP_011232.1 identified by match to protein family HMM PF00990 YP_011233.1 identified by similarity to GP:7339832; match to protein family HMM PF01610 YP_011234.1 identified by similarity to OMNI:NTL02MA2298 YP_011235.1 identified by similarity to GP:20095133 YP_011237.1 identified by similarity to GP:28629295 YP_011239.1 identified by similarity to OMNI:NMB2085 YP_011240.1 identified by similarity to GP:19882263; match to protein family HMM TIGR01612 YP_011241.1 identified by similarity to GP:19916320 YP_011243.1 identified by similarity to OMNI:NT01MC3723 YP_011244.1 identified by match to protein family HMM PF01527 YP_011245.1 identified by match to protein family HMM PF00665 YP_011247.1 identified by match to protein family HMM PF04404 YP_011250.1 identified by match to protein family HMM PF05016 YP_011251.1 identified by match to protein family HMM PF01402 YP_011252.1 identified by similarity to SP:P29933 YP_011256.1 identified by similarity to GP:20095150 YP_011257.1 identified by match to protein family HMM PF02661 YP_011258.1 identified by similarity to GP:20095140 YP_011265.1 identified by match to protein family HMM PF00535 YP_011268.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_011270.1 identified by similarity to OMNI:EF2761; match to protein family HMM PF04468 YP_011271.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_011272.1 identified by match to protein family HMM PF00535 YP_011274.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_011275.1 identified by match to protein family HMM PF00580 YP_011276.1 identified by similarity to GP:29338363 YP_011277.1 identified by match to protein family HMM PF03060 YP_011279.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_011280.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011281.1 identified by similarity to OMNI:TM0854; match to protein family HMM PF01966 YP_011282.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_011283.1 identified by match to protein family HMM PF00515 YP_011285.1 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_011286.1 identified by similarity to GP:510670; match to protein family HMM PF00072 YP_011287.2 identified by similarity to SP:P39802; match to protein family HMM PF01584 YP_011288.1 identified by match to protein family HMM PF00991 YP_011289.1 identified by similarity to SP:P07801 YP_011290.1 identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130 YP_011291.1 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339 YP_011292.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011295.1 identified by similarity to SP:P02968; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_011296.1 identified by similarity to SP:O54408 YP_011297.1 identified by similarity to SP:P42061; match to protein family HMM PF00496 YP_011298.2 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_011299.1 identified by match to protein family HMM PF00392 YP_011301.1 identified by similarity to OMNI:NTL01BH0391; match to protein family HMM PF00892 YP_011303.1 identified by match to protein family HMM PF00036 YP_011304.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_011305.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_011306.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_011307.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_011308.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_011310.1 identified by similarity to SP:P03019; match to protein family HMM PF00027 YP_011311.1 identified by similarity to SP:P31896 YP_011312.1 identified by similarity to SP:P31897; match to protein family HMM PF00991 YP_011313.1 identified by match to protein family HMM PF00582 YP_011314.1 identified by similarity to OMNI:CC1604; match to protein family HMM PF04357 YP_011315.1 identified by match to protein family HMM PF01103 YP_011316.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00991 YP_011317.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00991 YP_011319.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_011321.1 identified by match to protein family HMM PF02579 YP_011322.1 identified by match to protein family HMM PF02579 YP_011323.1 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_011324.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_011326.1 identified by similarity to SP:P31466; match to protein family HMM PF00860 YP_011327.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_011329.1 identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964 YP_011331.1 identified by similarity to OMNI:CT0429 YP_011332.1 identified by match to protein family HMM PF00263 YP_011334.1 identified by match to protein family HMM PF00072 YP_011335.1 identified by similarity to GP:10334985; match to protein family HMM PF00437 YP_011336.1 identified by similarity to OMNI:NTL01RS0651 YP_011337.1 identified by similarity to OMNI:NTL01SM00146 YP_011338.1 identified by match to protein family HMM PF00515 YP_011340.1 identified by match to protein family HMM PF00092 YP_011342.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011350.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_011351.1 identified by similarity to OMNI:NTL03CP2602 YP_011352.1 identified by match to protein family HMM PF00850 YP_011353.1 identified by similarity to SP:P37537; match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_011354.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_011355.1 identified by similarity to SP:P36664; match to protein family HMM PF01975; match to protein family HMM TIGR00087 YP_011356.1 identified by similarity to SP:P13243; match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_011357.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_011358.1 identified by similarity to SP:P22616 YP_011360.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315 YP_011361.1 identified by similarity to SP:P39319; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_011362.1 identified by similarity to GP:21666416; match to protein family HMM PF05670 YP_011363.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_011364.1 identified by similarity to SP:P54342 YP_011367.1 identified by match to protein family HMM PF00877 YP_011378.1 identified by match to protein family HMM PF01464 YP_011379.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 YP_011381.1 identified by match to protein family HMM PF03864 YP_011382.1 identified by similarity to GP:311850 YP_011383.1 identified by match to protein family HMM PF01343 YP_011384.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_011388.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01612 YP_011391.1 identified by match to protein family HMM PF00665 YP_011392.1 identified by match to protein family HMM PF01527 YP_011397.1 identified by match to protein family HMM TIGR01764 YP_011401.1 identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613 YP_011410.1 identified by match to protein family HMM PF00589 YP_011414.1 identified by similarity to SP:Q24857; match to protein family HMM PF00465 YP_011415.1 identified by match to protein family HMM PF00497; match to protein family HMM PF01464 YP_011416.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_011417.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan YP_011418.1 identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837 YP_011422.1 identified by similarity to GP:18252514 YP_011423.1 identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_011425.1 identified by similarity to OMNI:NTL01MT00146 YP_011426.1 identified by match to protein family HMM PF00565 YP_011428.1 identified by match to protein family HMM PF00076 YP_011429.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_011430.1 identified by similarity to SP:P45473; match to protein family HMM PF00583 YP_011431.1 identified by match to protein family HMM PF03193 YP_011433.1 identified by similarity to OMNI:NTL03CP0738 YP_011435.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_011439.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02786 YP_011441.1 identified by similarity to GP:4426946; match to protein family HMM PF00691 YP_011442.1 identified by similarity to SP:P28611; match to protein family HMM PF01618 YP_011443.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_011444.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_011446.1 identified by similarity to OMNI:NTL03PA00369; match to protein family HMM PF00561 YP_011447.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_011448.1 identified by similarity to OMNI:NTL03CP1242 YP_011450.1 identified by match to protein family HMM PF03186 YP_011451.1 identified by match to protein family HMM PF00588 YP_011452.1 identified by match to protein family HMM PF00933 YP_011453.1 identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378 YP_011454.1 identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557 YP_011455.1 identified by similarity to SP:Q47898; match to protein family HMM PF01112 YP_011456.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_011457.1 identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095 YP_011458.1 identified by match to protein family HMM PF00293 YP_011459.1 identified by match to protein family HMM PF00575 YP_011460.1 identified by match to protein family HMM PF00578 YP_011463.1 identified by match to protein family HMM PF00501 YP_011464.1 identified by match to protein family HMM PF01381 YP_011465.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362 YP_011467.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_011468.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_011469.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_011471.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_011472.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_011473.1 identified by similarity to SP:P28692; match to protein family HMM PF01728 YP_011476.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_011484.1 identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055 YP_011485.1 identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901 YP_011488.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_011489.1 identified by match to protein family HMM PF01925 YP_011491.1 identified by match to protein family HMM PF00892 YP_011493.1 identified by match to protein family HMM PF00324 YP_011494.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_011498.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_011499.1 identified by similarity to GP:1515466; match to protein family HMM PF00361 YP_011500.1 selenoprotein; identified by similarity to GP:1515467; match to protein family HMM PF00146 YP_011501.1 identified by similarity to GP:1515468; match to protein family HMM PF01058 YP_011502.1 identified by match to protein family HMM PF00037 YP_011503.2 identified by similarity to GP:1515470; match to protein family HMM PF00329 YP_011504.1 identified by similarity to SP:P31895; match to protein family HMM PF00346 YP_011505.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100 YP_011506.1 identified by similarity to SP:P31894; match to protein family HMM PF00037 YP_011507.1 identified by match to protein family HMM PF02388 YP_011508.1 identified by similarity to OMNI:VC1289; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_011509.1 identified by similarity to SP:Q51005; match to protein family HMM PF00912; match to protein family HMM TIGR02070 YP_011510.1 identified by match to protein family HMM PF04069 YP_011511.1 identified by similarity to SP:P46921; match to protein family HMM PF00528 YP_011512.1 identified by similarity to SP:P17328; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_011515.1 identified by similarity to OMNI:NTL01MM0929; match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_011518.1 identified by similarity to OMNI:NTL01RS1312; match to protein family HMM PF01865 YP_011519.1 identified by similarity to GP:15026158; match to protein family HMM PF01384 YP_011520.1 identified by match to protein family HMM PF01258 YP_011521.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_011522.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_011523.1 identified by match to protein family HMM PF00753 YP_011526.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198 YP_011528.1 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_011529.1 identified by similarity to SP:P14294; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056 YP_011530.1 identified by match to protein family HMM PF00015 YP_011531.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_011532.1 identified by match to protein family HMM PF00486 YP_011533.1 identified by match to protein family HMM PF01977 YP_011535.1 identified by match to protein family HMM PF01704 YP_011537.1 identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_011538.1 identified by similarity to SP:P04131; match to protein family HMM PF00403 YP_011539.1 identified by similarity to GP:3978519 YP_011541.1 identified by match to protein family HMM PF01155 YP_011542.1 identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073 YP_011543.1 identified by similarity to SP:P53383 YP_011544.1 identified by match to protein family HMM PF01713 YP_011545.1 identified by similarity to SP:P00373; match to protein family HMM PF01089; match to protein family HMM TIGR00112 YP_011546.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_011548.1 identified by similarity to SP:P37691; match to protein family HMM PF04748 YP_011549.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_011550.1 identified by match to protein family HMM PF01551 YP_011551.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730 YP_011553.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_011554.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_011555.1 identified by match to protein family HMM PF00497 YP_011556.1 identified by match to protein family HMM PF00005 YP_011560.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_011561.1 identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_011562.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094 YP_011563.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_011565.1 identified by match to protein family HMM PF00535 YP_011566.1 identified by match to protein family HMM PF00535 YP_011567.1 identified by match to protein family HMM PF00535 YP_011568.1 identified by similarity to SP:P19396; similarity to GP:11079208; match to protein family HMM PF00588 YP_011570.2 identified by match to protein family HMM PF01966 YP_011572.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_011573.1 identified by similarity to SP:P49852; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_011575.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_011576.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_011577.1 identified by match to protein family HMM PF00155 YP_011578.1 identified by similarity to OMNI:CC1910 YP_011580.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_011581.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_011582.1 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 YP_011583.1 identified by similarity to SP:P31519; match to protein family HMM PF03938 YP_011584.1 identified by match to protein family HMM PF01520 YP_011586.2 identified by match to protein family HMM PF01103 YP_011587.1 identified by similarity to SP:P75957; match to protein family HMM PF00005 YP_011588.1 identified by similarity to SP:P75956; match to protein family HMM PF02687 YP_011589.2 identified by similarity to SP:P41255; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 YP_011591.1 identified by match to protein family HMM PF00165 YP_011592.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_011593.1 identified by similarity to SP:P72335; match to protein family HMM PF00005 YP_011594.1 identified by similarity to GP:29340941 YP_011595.1 identified by similarity to GP:29340940 YP_011596.1 identified by match to protein family HMM PF00593 YP_011597.1 identified by match to protein family HMM PF00496 YP_011598.1 identified by match to protein family HMM PF00528 YP_011599.1 identified by match to protein family HMM PF00528 YP_011600.1 identified by match to protein family HMM PF00005 YP_011601.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_011602.1 identified by match to protein family HMM PF02472 YP_011603.1 identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_011607.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_011608.2 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_011609.1 identified by similarity to SP:P31005; match to protein family HMM PF00465 YP_011611.1 identified by similarity to OMNI:TM0095 YP_011612.2 identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_011613.1 identified by similarity to GP:21327885 YP_011614.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02662 YP_011615.1 identified by similarity to GP:12642418; match to protein family HMM PF00037 YP_011616.1 identified by similarity to GP:3378542; match to protein family HMM PF02754 YP_011617.1 identified by similarity to GP:12642421 YP_011618.1 identified by similarity to GP:2393887; match to protein family HMM PF00465 YP_011620.1 identified by similarity to OMNI:NTL01PH01257 YP_011622.1 identified by match to protein family HMM PF00497 YP_011623.2 identified by similarity to GP:2654175; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_011624.1 identified by match to protein family HMM PF00036 YP_011625.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011626.1 identified by match to protein family HMM PF04055 YP_011629.1 identified by similarity to GP:22294464; match to protein family HMM PF04543 YP_011631.1 identified by match to protein family HMM PF04892 YP_011632.1 identified by similarity to GP:13752542 YP_011633.1 identified by similarity to OMNI:NTL02ML3469 YP_011634.1 identified by match to protein family HMM PF01361 YP_011635.1 identified by match to protein family HMM PF00881 YP_011636.1 identified by match to protein family HMM PF01638 YP_011637.1 identified by similarity to OMNI:NTL01ATA0877; match to protein family HMM PF00892 YP_011638.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_011643.1 identified by match to protein family HMM PF00076 YP_011645.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_011648.1 identified by similarity to SP:P27841; match to protein family HMM PF01544 YP_011649.1 identified by similarity to OMNI:AF1432 YP_011650.1 identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687 YP_011651.1 identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_011653.1 identified by match to protein family HMM PF00011 YP_011654.1 identified by match to protein family HMM PF00011 YP_011655.1 identified by similarity to OMNI:NTL01PM1881 YP_011656.1 identified by similarity to GP:1929918; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_011658.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_011660.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_011661.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_011662.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_011663.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_011667.1 identified by match to protein family HMM PF01370 YP_011673.1 identified by similarity to SP:P42062; match to protein family HMM PF00528 YP_011674.1 identified by similarity to SP:P42063; match to protein family HMM PF00528 YP_011675.1 identified by similarity to SP:P17894 YP_011679.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_011680.1 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 YP_011682.1 identified by similarity to SP:P75768; match to protein family HMM PF01027 YP_011683.1 selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_011684.1 identified by similarity to OMNI:NTL01TE2269; match to protein family HMM PF03065 YP_011687.1 identified by match to protein family HMM PF00175 YP_011688.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_011689.1 identified by similarity to SP:P46338; match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_011690.1 identified by similarity to SP:P46339; match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_011691.1 identified by similarity to GP:1369911; match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_011693.1 identified by similarity to SP:P32175 YP_011694.1 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_011695.1 identified by similarity to SP:P00135; match to protein family HMM PF02085 YP_011696.1 identified by match to protein family HMM PF00034 YP_011698.1 identified by match to protein family HMM PF00583 YP_011702.1 identified by similarity to SP:O34411; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_011703.1 identified by similarity to SP:P31060; match to protein family HMM PF00005 YP_011704.1 identified by match to protein family HMM PF00697 YP_011705.1 identified by match to protein family HMM PF00037 YP_011706.1 identified by match to protein family HMM PF01435 YP_011707.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_011711.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_011712.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_011713.1 identified by match to protein family HMM PF03799 YP_011714.1 identified by match to protein family HMM PF02873; match to protein family HMM TIGR00179 YP_011715.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_011716.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_011717.1 identified by match to protein family HMM PF01098 YP_011718.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 YP_011719.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_011720.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_011721.1 identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 YP_011722.1 identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_011724.1 identified by similarity to SP:Q97H81; match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_011725.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_011726.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_011727.1 identified by match to protein family HMM PF01966 YP_011728.1 identified by match to protein family HMM PF00571 YP_011729.1 identified by similarity to OMNI:NTL01HP00646 YP_011730.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_011731.1 forms a direct contact with the tRNA during translation YP_011733.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_011736.1 identified by match to protein family HMM PF02085 YP_011737.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_011738.1 identified by similarity to SP:P21852; match to protein family HMM PF00374 YP_011739.1 identified by similarity to SP:P55323 YP_011741.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_011742.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_011743.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_011744.1 identified by match to protein family HMM PF00376 YP_011745.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_011746.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_011747.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_011748.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_011749.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_011750.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_011752.1 identified by similarity to GP:38802; match to protein family HMM PF06050 YP_011753.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_011755.3 catalyzes the reduction of hydroxylamine to ammonia and water YP_011756.1 identified by match to protein family HMM PF00037 YP_011757.1 identified by match to protein family HMM PF00465 YP_011758.2 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011759.1 identified by match to protein family HMM PF00027 YP_011760.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_011763.2 identified by match to protein family HMM PF01966 YP_011764.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_011765.1 identified by match to protein family HMM PF01106 YP_011766.1 identified by similarity to OMNI:NTL01FN0863 YP_011767.1 identified by similarity to OMNI:NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_011769.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_011770.1 identified by similarity to SP:P53557; match to protein family HMM PF04055; match to protein family HMM TIGR00433 YP_011771.1 identified by similarity to SP:P53555; match to protein family HMM PF00202; match to protein family HMM TIGR00508 YP_011772.1 identified by similarity to SP:O84537 YP_011773.1 identified by match to protein family HMM PF00106 YP_011774.1 identified by similarity to SP:P20804 YP_011775.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_011776.1 identified by similarity to SP:P22806 YP_011777.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR00347 YP_011778.1 identified by similarity to SP:P00861; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_011779.1 identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978 YP_011780.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_011781.1 identified by similarity to SP:O52980; match to protein family HMM PF00254 YP_011782.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011783.1 identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_011784.1 identified by similarity to OMNI:NTL02MA3391; match to protein family HMM PF04023 YP_011786.1 identified by similarity to GP:19887847; match to protein family HMM PF04023 YP_011787.1 identified by match to protein family HMM PF01546 YP_011788.1 identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_011789.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_011790.1 identified by match to protein family HMM PF00072 YP_011791.1 identified by match to protein family HMM PF00515 YP_011792.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518 YP_011793.1 identified by match to protein family HMM PF00072 YP_011794.1 identified by match to protein family HMM PF00440 YP_011796.1 identified by match to protein family HMM PF01544 YP_011797.1 identified by similarity to OMNI:TM1428; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_011798.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_011799.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_011800.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_011814.1 identified by similarity to OMNI:NTL02SC5552 YP_011816.1 identified by similarity to GP:13186164 YP_011820.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_011821.1 identified by similarity to GP:4426946; match to protein family HMM PF00691 YP_011824.1 identified by similarity to OMNI:NTL03PA02779 YP_011827.1 identified by similarity to SP:P02911; match to protein family HMM PF00497 YP_011828.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011829.1 identified by match to protein family HMM PF01699 YP_011831.1 identified by similarity to OMNI:NTL03CP2311 YP_011832.1 identified by similarity to OMNI:CC3039 YP_011840.1 identified by match to protein family HMM PF00515 YP_011845.1 identified by similarity to SP:Q06553; match to protein family HMM PF00717 YP_011847.1 identified by similarity to SP:P25740; match to protein family HMM PF00534 YP_011849.2 identified by match to protein family HMM PF00672 YP_011851.1 identified by similarity to GP:15025399 YP_011855.1 molecular chaperone YP_011856.1 identified by match to protein family HMM PF00392 YP_011857.1 identified by similarity to SP:P27611 YP_011858.1 catalyzes the formation of pyruvate from D-cysteine YP_011859.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_011867.1 identified by match to protein family HMM PF00768 YP_011869.1 identified by match to protein family HMM PF01242 YP_011871.1 identified by match to protein family HMM TIGR00364 YP_011874.1 identified by similarity to SP:P54952 YP_011875.1 identified by similarity to GP:19886926 YP_011876.1 identified by similarity to OMNI:NTL03PA05367; match to protein family HMM PF00005 YP_011877.1 identified by similarity to OMNI:NTL02MA0874; match to protein family HMM PF00528 YP_011878.1 identified by similarity to OMNI:NTL01MT01690; match to protein family HMM PF00528 YP_011879.1 identified by similarity to SP:P46338; match to protein family HMM TIGR02136 YP_011880.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_011883.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_011884.1 identified by similarity to SP:Q9RKM3; match to protein family HMM PF03458 YP_011885.1 identified by similarity to SP:P13032; match to protein family HMM PF01266 YP_011886.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384 YP_011887.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_011889.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_011890.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479 YP_011891.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_011892.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_011894.1 identified by similarity to GP:13446681; match to protein family HMM PF00597 YP_011898.1 identified by match to protein family HMM PF00717 YP_011900.1 identified by similarity to SP:P07636; match to protein family HMM PF00665 YP_011901.1 identified by similarity to SP:P03763 YP_011908.1 identified by similarity to OMNI:NMB1083 YP_011911.1 identified by match to protein family HMM PF01464 YP_011914.1 identified by similarity to OMNI:NTL01NM01121 YP_011916.1 identified by similarity to OMNI:NMB1092 YP_011917.1 identified by match to protein family HMM TIGR01630 YP_011918.1 identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074 YP_011919.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_011920.1 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635 YP_011922.1 identified by similarity to OMNI:NTL01NM01727 YP_011923.1 identified by similarity to SP:Q9T1W1 YP_011926.1 identified by similarity to GP:6900380 YP_011927.1 identified by similarity to OMNI:NMB1103 YP_011928.1 identified by similarity to SP:P79678 YP_011931.1 identified by similarity to OMNI:NMB1105 YP_011934.1 identified by similarity to OMNI:NTL01NM01712 YP_011935.1 identified by similarity to SP:P08558 YP_011936.1 identified by match to protein family HMM TIGR01644 YP_011939.1 identified by similarity to OMNI:NTL01NM01233 YP_011940.1 identified by similarity to GP:19483757 YP_011941.1 identified by similarity to GP:19483737 YP_011944.1 identified by similarity to OMNI:NTL03EC5013 YP_011945.1 identified by match to protein family HMM PF01555 YP_011947.1 identified by similarity to SP:P76085 YP_011949.1 identified by match to protein family HMM PF00588 YP_011950.1 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_011951.2 identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326 YP_011952.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_011953.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_011954.1 identified by similarity to SP:P22729; match to protein family HMM PF02653 YP_011955.1 identified by match to protein family HMM PF02653 YP_011956.1 identified by match to protein family HMM PF01094 YP_011958.1 identified by similarity to OMNI:NTL01FN0227 YP_011960.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_011961.1 identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468 YP_011962.1 identified by match to protein family HMM PF01888; match to protein family HMM TIGR00312 YP_011964.1 identified by match to protein family HMM PF00581 YP_011965.1 identified by match to protein family HMM TIGR01909 YP_011966.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_011967.1 identified by similarity to OMNI:DR1011; match to protein family HMM PF02642 YP_011968.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_011969.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_011970.1 identified by similarity to GP:7242723; match to protein family HMM PF02621 YP_011974.1 identified by similarity to GP:7379678; match to protein family HMM PF00892 YP_011975.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_011976.1 identified by match to protein family HMM PF00881 YP_011977.1 identified by match to protein family HMM PF00753 YP_011980.1 identified by similarity to SP:P31773 YP_011981.1 identified by similarity to OMNI:NTL01FN1523 YP_011982.1 identified by match to protein family HMM PF00072 YP_011983.1 identified by similarity to OMNI:NTL01RS0459 YP_011984.1 identified by similarity to OMNI:NTL01TE2295 YP_011985.1 identified by similarity to OMNI:NTL01TT1359; match to protein family HMM PF02588 YP_011986.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01842 YP_011988.1 identified by similarity to GP:145087; match to protein family HMM PF04358 YP_011991.1 identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547 YP_011992.1 identified by similarity to OMNI:NTL01BH1681; match to protein family HMM PF02588 YP_011995.1 identified by match to protein family HMM PF01925 YP_011996.1 identified by match to protein family HMM PF01070 YP_011997.1 identified by match to protein family HMM PF00392 YP_011999.1 identified by similarity to OMNI:NTL01NS2107 YP_012000.1 identified by match to protein family HMM PF01022 YP_012001.1 identified by match to protein family HMM PF01184 YP_012004.1 identified by similarity to SP:P77611; match to protein family HMM PF00037 YP_012005.1 identified by match to protein family HMM PF03116 YP_012006.1 identified by similarity to SP:P58345; match to protein family HMM PF04205 YP_012007.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_012008.1 identified by similarity to SP:P76181; match to protein family HMM PF02508 YP_012009.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_012010.1 identified by match to protein family HMM PF02424; match to protein family HMM TIGR01409 YP_012011.1 identified by match to protein family HMM PF01047 YP_012012.1 identified by similarity to SP:P77894; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_012014.1 identified by match to protein family HMM PF00392 YP_012016.1 identified by match to protein family HMM TIGR01409 YP_012017.2 identified by match to protein family HMM PF02492 YP_012018.1 identified by match to protein family HMM PF01618 YP_012019.1 identified by match to protein family HMM PF02472 YP_012020.1 identified by similarity to GP:17982262; match to protein family HMM TIGR01352 YP_012021.1 identified by similarity to SP:P00133; match to protein family HMM PF02085 YP_012022.2 identified by similarity to SP:P13024 YP_012023.1 identified by similarity to SP:P24184 YP_012024.1 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_012027.1 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_012028.1 identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_012029.1 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_012031.1 identified by match to protein family HMM PF00440 YP_012032.1 identified by match to protein family HMM PF04909 YP_012034.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_012035.1 identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786 YP_012036.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_012037.1 identified by similarity to SP:P09374; similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055 YP_012039.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_012040.1 identified by match to protein family HMM PF00589 YP_012044.1 identified by similarity to GP:4530498 YP_012049.1 identified by similarity to OMNI:NTL01XC4052; match to protein family HMM PF04313 YP_012050.1 identified by similarity to OMNI:NTL02ST1547 YP_012051.1 identified by similarity to OMNI:NTL01TA00070 YP_012052.1 identified by similarity to OMNI:VCA0483 YP_012053.1 identified by similarity to SP:P14633 YP_012054.1 identified by similarity to SP:P11876; match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_012055.1 identified by similarity to SP:P09184; match to protein family HMM PF03852 YP_012057.1 identified by similarity to SP:O07513; match to protein family HMM PF01230 YP_012062.1 identified by similarity to GP:19483737 YP_012063.1 identified by similarity to GP:19483757 YP_012064.1 identified by similarity to GP:19483756 YP_012065.1 identified by match to protein family HMM TIGR01644 YP_012066.1 identified by similarity to SP:P08558 YP_012067.1 identified by similarity to GP:19483753 YP_012068.1 identified by similarity to GP:915377 YP_012069.1 identified by similarity to OMNI:NTL03ST4078 YP_012070.1 identified by similarity to SP:P79679 YP_012071.1 identified by similarity to SP:P79678 YP_012072.1 identified by similarity to GP:1834290 YP_012078.1 identified by similarity to GP:6714967; match to protein family HMM PF05838 YP_012079.1 identified by match to protein family HMM TIGR01593 YP_012081.1 identified by match to protein family HMM PF03864 YP_012082.1 identified by similarity to OMNI:NTL01RS0859 YP_012083.1 identified by match to protein family HMM PF01343 YP_012084.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_012087.1 identified by match to protein family HMM TIGR01764 YP_012088.1 identified by similarity to GP:13361094 YP_012090.1 identified by match to protein family HMM PF01555; match to protein family HMM PF02195 YP_012091.1 identified by similarity to OMNI:CC3049 YP_012093.1 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613 YP_012094.1 identified by similarity to SP:P15925; match to protein family HMM TIGR01499 YP_012095.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_012096.1 catalyzes the removal of amino acids from the N termini of peptides YP_012097.1 identified by similarity to GP:155577; match to protein family HMM PF00465 YP_012098.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_012099.1 identified by similarity to GP:9946975; match to protein family HMM PF00892 YP_012100.1 identified by similarity to SP:Q05596; match to protein family HMM PF00005 YP_012101.1 identified by match to protein family HMM PF02632 YP_012103.1 Inhibits transcription at high concentrations of nickel YP_012104.2 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_012105.1 identified by similarity to SP:P75935; match to protein family HMM PF00460 YP_012106.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012108.1 identified by match to protein family HMM PF00515 YP_012109.1 identified by similarity to SP:O67039; match to protein family HMM PF01875 YP_012110.1 identified by similarity to OMNI:NTL01MM1125 YP_012112.1 identified by match to protein family HMM PF01979 YP_012113.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_012114.1 identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_012116.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_012117.1 identified by similarity to SP:Q04944; match to protein family HMM PF00465 YP_012118.1 identified by similarity to SP:P04152; match to protein family HMM PF00817 YP_012119.1 identified by similarity to SP:P04153; match to protein family HMM PF00717 YP_012121.1 identified by match to protein family HMM PF01047 YP_012122.1 identified by similarity to OMNI:NTL01YP1657; match to protein family HMM PF02659 YP_012123.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_012124.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_012126.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_012128.1 identified by similarity to SP:P37186; match to protein family HMM TIGR00536 YP_012129.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_012132.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_012133.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_012134.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_012135.1 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_012136.1 binds directly to 23S ribosomal RNA YP_012137.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_012138.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_012139.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_012140.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_012141.1 identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01612 YP_012143.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369 YP_012144.1 identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777 YP_012145.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277 YP_012146.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012147.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_012149.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00515 YP_012150.1 identified by similarity to OMNI:NTL01NS1696; match to protein family HMM PF01837 YP_012151.1 identified by similarity to OMNI:NTL01TE1240 YP_012153.1 identified by similarity to OMNI:NTL01XC2985 YP_012154.1 identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928 YP_012155.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336 YP_012156.1 identified by match to protein family HMM PF03734 YP_012157.1 identified by similarity to GP:13926258 YP_012159.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_012160.1 identified by match to protein family HMM PF00669 YP_012161.1 identified by similarity to OMNI:NTL01SM01900; match to protein family HMM PF04342 YP_012162.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_012163.1 identified by similarity to OMNI:NTL01PF2043; match to protein family HMM PF00892 YP_012164.1 identified by match to protein family HMM PF00392 YP_012165.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_012167.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012169.1 identified by match to protein family HMM PF01925 YP_012170.1 identified by similarity to SP:O28710 YP_012171.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_012173.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_012174.1 identified by match to protein family HMM PF00072 YP_012177.1 identified by match to protein family HMM PF00072 YP_012178.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_012179.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_012180.1 identified by similarity to SP:P27550; match to protein family HMM PF00501 YP_012181.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629; match to protein family HMM TIGR01369 YP_012182.1 identified by match to protein family HMM PF01501 YP_012184.1 identified by similarity to SP:Q06607; match to protein family HMM PF00216 YP_012186.1 identified by match to protein family HMM PF04307 YP_012187.1 identified by similarity to OMNI:NT01MC0831; match to protein family HMM PF04463 YP_012189.1 identified by similarity to OMNI:NTL02EC4785; match to protein family HMM PF00702 YP_012190.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_012191.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_012192.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_012193.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_012194.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_012195.1 identified by similarity to OMNI:NTL01AA00614; match to protein family HMM PF01937 YP_012196.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_012197.1 identified by similarity to SP:P23855; match to protein family HMM PF04024 YP_012199.1 identified by match to protein family HMM PF04012 YP_012200.1 identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_012201.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_012203.1 identified by match to protein family HMM PF00535 YP_012204.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_012205.1 identified by match to protein family HMM PF00535 YP_012206.1 identified by match to protein family HMM PF00534 YP_012207.1 identified by match to protein family HMM PF01370 YP_012210.1 identified by match to protein family HMM PF00551 YP_012212.1 identified by similarity to OMNI:CC3255 YP_012214.1 identified by match to protein family HMM PF04055 YP_012215.1 identified by match to protein family HMM PF04055 YP_012216.1 identified by match to protein family HMM PF01041 YP_012217.1 identified by similarity to SP:P39626; similarity to GP:10179847; match to protein family HMM PF02348 YP_012219.1 identified by match to protein family HMM PF03102 YP_012220.1 identified by match to protein family HMM PF04055 YP_012221.1 identified by similarity to GP:22095313; match to protein family HMM PF01041 YP_012222.1 identified by similarity to OMNI:CC2858 YP_012224.1 identified by match to protein family HMM PF00535 YP_012225.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_012226.1 identified by similarity to OMNI:NT01MC1323 YP_012227.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_012228.2 identified by similarity to OMNI:CT0759 YP_012229.1 identified by match to protein family HMM PF04055 YP_012230.1 identified by similarity to SP:O58549; match to protein family HMM PF02310; match to protein family HMM PF04055 YP_012232.1 identified by match to protein family HMM PF01966 YP_012233.1 identified by similarity to OMNI:NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012234.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_012236.1 identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 YP_012237.1 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_012238.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_012239.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_012240.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_012241.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_012242.1 identified by similarity to OMNI:NTL01HS00726 YP_012243.1 identified by similarity to OMNI:HP0137; match to protein family HMM PF02589 YP_012244.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_012246.2 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_012247.1 identified by similarity to OMNI:NTL01SS01164; match to protein family HMM PF04015 YP_012248.1 identified by match to protein family HMM PF00581 YP_012250.1 identified by similarity to GP:9949385 YP_012252.1 identified by similarity to SP:P00120; match to protein family HMM PF00034 YP_012253.1 identified by match to protein family HMM PF06004 YP_012256.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012257.1 identified by match to protein family HMM PF00534 YP_012258.1 identified by match to protein family HMM PF01063 YP_012259.1 identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_012261.1 identified by match to protein family HMM PF04657 YP_012262.1 identified by similarity to SP:P08337; match to protein family HMM PF00293 YP_012263.1 identified by similarity to SP:P45535; match to protein family HMM PF00005 YP_012265.1 identified by match to protein family HMM PF04055 YP_012266.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_012267.1 identified by similarity to OMNI:TM0731 YP_012268.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00539 YP_012269.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012270.1 identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_012272.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012273.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_012274.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_012275.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_012276.1 activates fatty acids by binding to coenzyme A YP_012277.1 identified by match to protein family HMM PF01381 YP_012278.1 identified by similarity to SP:O07451; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143 YP_012279.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_012280.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_012281.1 identified by similarity to OMNI:NMB1337; match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_012282.1 identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_012283.1 identified by similarity to SP:P76224; match to protein family HMM PF00528 YP_012284.1 identified by similarity to OMNI:HI1195 YP_012285.1 identified by similarity to OMNI:VC0081; match to protein family HMM PF00892 YP_012287.1 identified by similarity to OMNI:NTL01OI0852 YP_012288.1 identified by match to protein family HMM PF00578 YP_012290.1 identified by match to protein family HMM PF00903 YP_012291.1 identified by similarity to SP:P55323 YP_012292.1 identified by similarity to GP:9946975; match to protein family HMM PF00892 YP_012293.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_012295.1 identified by similarity to SP:Q04152 YP_012297.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR00379 YP_012298.1 identified by similarity to GP:15826199; match to protein family HMM PF02570 YP_012299.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_012301.1 identified by match to protein family HMM PF03349 YP_012302.1 identified by similarity to SP:Q9A4C3 YP_012304.1 identified by match to protein family HMM PF00301 YP_012305.1 identified by similarity to SP:P24931; match to protein family HMM PF02915 YP_012306.1 identified by match to protein family HMM PF01475 YP_012308.1 identified by match to protein family HMM PF02321 YP_012310.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_012311.1 identified by match to protein family HMM PF02472 YP_012312.1 identified by similarity to GP:14595286; match to protein family HMM TIGR01352 YP_012315.1 identified by similarity to SP:P07176; match to protein family HMM PF00691 YP_012317.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_012318.1 identified by match to protein family HMM PF00034 YP_012319.1 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931 YP_012320.1 identified by match to protein family HMM PF00037 YP_012321.1 identified by match to protein family HMM PF00890; match to protein family HMM PF02910 YP_012322.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_012323.1 identified by match to protein family HMM PF00515 YP_012324.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_012325.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_012327.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_012329.1 identified by similarity to OMNI:NTL03CP0853 YP_012330.1 identified by match to protein family HMM PF00501 YP_012332.1 identified by match to protein family HMM PF00266 YP_012334.1 identified by match to protein family HMM PF01966 YP_012337.1 identified by similarity to SP:P43671 YP_012338.1 identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886 YP_012341.1 identified by match to protein family HMM PF04198 YP_012342.1 identified by similarity to SP:P18158; match to protein family HMM PF01266 YP_012343.1 identified by similarity to SP:P18156; match to protein family HMM PF00230 YP_012344.1 identified by similarity to PIR:JE0391; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_012345.1 identified by match to protein family HMM PF02525 YP_012346.1 identified by match to protein family HMM PF00881 YP_012347.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_012349.1 identified by match to protein family HMM PF00497 YP_012350.1 identified by similarity to GP:2801417; match to protein family HMM PF02563 YP_012352.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_012353.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409 YP_012355.1 identified by match to protein family HMM PF01292 YP_012357.1 identified by similarity to GP:3309583; match to protein family HMM PF00300; match to protein family HMM PF01591 YP_012358.1 amylomaltase; acts to release glucose from maltodextrins YP_012359.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_012360.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_012361.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_012362.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012364.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_012365.1 identified by similarity to GP:887858; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF01814 YP_012366.1 identified by similarity to SP:Q56213; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_012367.1 identified by similarity to OMNI:NTL03PA03238 YP_012368.1 identified by match to protein family HMM PF04333 YP_012369.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_012371.1 identified by match to protein family HMM PF00005 YP_012372.1 identified by similarity to SP:P10904; match to protein family HMM PF01547 YP_012373.1 identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528 YP_012374.1 identified by similarity to OMNI:TM0598; match to protein family HMM PF00528 YP_012375.1 identified by similarity to GP:19886751 YP_012377.1 identified by similarity to SP:Q52522 YP_012378.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_012379.1 identified by similarity to SP:Q05631; match to protein family HMM PF01890 YP_012380.1 identified by similarity to SP:P21640; match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_012381.1 identified by similarity to SP:P00131; match to protein family HMM PF02085 YP_012384.1 identified by similarity to SP:P27851; match to protein family HMM PF01209 YP_012386.1 identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_012388.1 identified by similarity to OMNI:NTL02SC4137 YP_012389.1 identified by similarity to SP:P19641; match to protein family HMM PF00348 YP_012390.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_012391.2 identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769 YP_012392.1 identified by similarity to SP:P35841; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_012393.1 identified by similarity to SP:P20418; match to protein family HMM PF01880; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332 YP_012394.1 identified by similarity to SP:P00269; match to protein family HMM PF00301 YP_012395.1 identified by similarity to SP:Q9F0J6; match to protein family HMM PF00258; match to protein family HMM PF00753 YP_012397.1 identified by similarity to SP:P02341; similarity to SP:P08821; similarity to GP:14028719; match to protein family HMM PF00216 YP_012398.1 identified by match to protein family HMM PF00877 YP_012399.1 identified by match to protein family HMM PF01189 YP_012401.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479 YP_012402.1 identified by match to protein family HMM PF00534 YP_012403.1 identified by match to protein family HMM TIGR01764 YP_012404.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_012405.1 identified by similarity to OMNI:NTL01CJ01286 YP_012406.1 identified by match to protein family HMM TIGR01409 YP_012407.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_012408.1 identified by similarity to SP:P06710; match to protein family HMM PF00004 YP_012409.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_012410.1 identified by match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_012412.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_012414.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_012415.1 identified by match to protein family HMM PF01464 YP_012416.1 identified by similarity to SP:P12048; match to protein family HMM PF01808 YP_012417.1 identified by match to protein family HMM PF00773 YP_012418.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_012420.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260 YP_012422.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852 YP_012424.1 identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326 YP_012425.1 identified by match to protein family HMM PF00072 YP_012426.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_012428.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_012430.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012431.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_012432.1 identified by match to protein family HMM PF00342 YP_012433.1 identified by similarity to SP:P23034; match to protein family HMM PF00155 YP_012434.1 identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230 YP_012437.2 identified by match to protein family HMM PF03748 YP_012438.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072 YP_012439.1 identified by similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_012440.1 identified by similarity to OMNI:NTL03PA01455; match to protein family HMM PF00991 YP_012441.1 identified by similarity to SP:Q01960; match to protein family HMM PF00448 YP_012442.1 membrane protein involved in the flagellar export apparatus YP_012443.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_012444.1 identified by similarity to SP:P35537; match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_012445.1 identified by similarity to SP:P12048; match to protein family HMM PF02142 YP_012446.1 identified by similarity to SP:P25519; match to protein family HMM TIGR00231 YP_012447.2 identified by similarity to SP:P23538; match to protein family HMM PF00391 YP_012448.1 identified by match to protein family HMM PF00072 YP_012449.1 identified by match to protein family HMM PF01569 YP_012450.1 identified by match to protein family HMM PF01551 YP_012451.1 identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171 YP_012452.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_012453.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_012455.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_012456.1 identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_012457.1 identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_012458.1 identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_012459.1 identified by similarity to OMNI:NTL01ST1561 YP_012461.1 identified by similarity to OMNI:NTL01SS02725; match to protein family HMM PF04982 YP_012463.1 identified by similarity to SP:P76085 YP_012464.1 identified by match to protein family HMM PF00595 YP_012465.1 identified by match to protein family HMM PF01402 YP_012466.1 identified by match to protein family HMM PF01149; match to protein family HMM TIGR00577 YP_012467.1 identified by similarity to SP:P39695; match to protein family HMM TIGR00360 YP_012468.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_012469.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_012471.1 identified by similarity to SP:P17413 YP_012472.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_012473.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_012474.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_012475.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_012478.1 identified by similarity to OMNI:NTL01MK0862 YP_012479.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012480.1 identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_012481.1 identified by similarity to SP:P94364; match to protein family HMM PF01654 YP_012482.1 identified by match to protein family HMM PF00515 YP_012483.1 identified by similarity to GP:944973 YP_012486.1 identified by similarity to SP:P08813; match to protein family HMM PF00037 YP_012488.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_012489.1 identified by similarity to SP:P36562; match to protein family HMM PF02277 YP_012491.1 identified by match to protein family HMM PF03747 YP_012493.1 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_012496.1 identified by match to protein family HMM PF00535 YP_012499.1 identified by similarity to OMNI:NTL01TT0760 YP_012500.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01645 YP_012501.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070 YP_012502.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_012503.1 identified by match to protein family HMM PF00171 YP_012504.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_012505.1 identified by similarity to GP:6689140 YP_012506.1 identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837 YP_012508.1 identified by match to protein family HMM PF01925 YP_012512.1 identified by match to protein family HMM PF00004; match to protein family HMM PF00072; match to protein family HMM PF05362 YP_012513.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012515.1 identified by similarity to SP:P09550; match to protein family HMM PF02441 YP_012516.1 identified by match to protein family HMM PF00753 YP_012517.1 identified by match to protein family HMM PF01541 YP_012518.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_012520.1 identified by similarity to SP:O28974 YP_012521.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_012522.1 identified by match to protein family HMM PF01136 YP_012523.1 identified by similarity to SP:P25983 YP_012524.1 identified by similarity to SP:P54322; match to protein family HMM PF01180; match to protein family HMM TIGR01037 YP_012527.1 identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01237 YP_012528.1 identified by similarity to OMNI:NTL01YP2009 YP_012530.1 identified by similarity to OMNI:NTL01FN1931 YP_012531.1 identified by match to protein family HMM PF02687 YP_012532.1 identified by match to protein family HMM PF00005 YP_012534.1 identified by similarity to GP:12024949; match to protein family HMM PF00893 YP_012535.1 identified by similarity to GP:12024949; match to protein family HMM PF00893 YP_012538.1 identified by similarity to OMNI:NTL01TE1332 YP_012540.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_012542.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_012543.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012544.1 identified by match to protein family HMM PF00582 YP_012545.1 identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681 YP_012546.1 identified by similarity to GP:2772548; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497 YP_012547.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_012548.1 identified by match to protein family HMM TIGR02115 YP_012556.1 identified by match to protein family HMM PF01558 YP_012558.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_012559.1 identified by match to protein family HMM PF00037 YP_012560.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_012562.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_012564.1 identified by similarity to OMNI:CT0796; match to protein family HMM PF01145 YP_012565.1 identified by similarity to GP:5739472; match to protein family HMM PF01370 YP_012567.1 identified by match to protein family HMM PF00991 YP_012569.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_012570.1 identified by similarity to GP:882153; match to protein family HMM PF00294 YP_012571.1 identified by similarity to OMNI:NTL01BH0861 YP_012572.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189 YP_012573.1 identified by similarity to OMNI:NTL01TT1406 YP_012574.1 identified by similarity to SP:O85732; similarity to SP:P23882; similarity to SP:P94463; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_012575.1 identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_012576.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_012577.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_012578.1 identified by similarity to GP:19572327 YP_012580.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_012582.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_012583.1 identified by match to protein family HMM PF02687 YP_012584.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_012585.1 identified by match to protein family HMM PF00884 YP_012586.1 identified by similarity to SP:P00556; match to protein family HMM PF01219 YP_012587.1 identified by match to protein family HMM PF04073 YP_012588.1 Catalyzes the rate-limiting step in dNTP synthesis YP_012590.1 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_012591.1 identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_012593.1 identified by similarity to SP:P32682 YP_012595.1 identified by match to protein family HMM PF03773 YP_012597.1 identified by match to protein family HMM PF01435 YP_012598.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 YP_012601.1 identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_012604.1 identified by match to protein family HMM PF01551 YP_009042.1 identified by match to protein family HMM PF00991 YP_009044.1 identified by similarity to GP:14028719; match to protein family HMM PF00216 YP_009045.1 identified by match to protein family HMM PF00582 YP_009046.1 identified by similarity to GP:619724; match to protein family HMM PF00571; match to protein family HMM PF01769 YP_009047.1 identified by similarity to SP:P10390; match to protein family HMM PF02579; match to protein family HMM PF04055 YP_009048.1 identified by similarity to GP:1666889; match to protein family HMM PF00148 YP_009049.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_009050.1 identified by similarity to SP:P07324 YP_009051.1 identified by similarity to SP:P11347; match to protein family HMM PF00148; match to protein family HMM TIGR01286 YP_009052.1 identified by similarity to SP:P00467; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862 YP_009053.1 identified by similarity to SP:P80016; match to protein family HMM PF00543 YP_009054.1 identified by similarity to SP:P54807; match to protein family HMM PF00543 YP_009055.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_009056.1 identified by similarity to SP:Q44290; match to protein family HMM PF00682 YP_009061.1 identified by similarity to SP:P75830; match to protein family HMM PF00529 YP_009062.1 identified by similarity to OMNI:NTL01TE1840; match to protein family HMM PF00005 YP_009063.1 identified by similarity to GP:22002528; match to protein family HMM PF02687 YP_009064.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_009065.1 identified by similarity to OMNI:TC0753; match to protein family HMM PF00072 YP_009074.1 identified by match to protein family HMM PF00899 YP_009076.1 identified by match to protein family HMM PF00515 YP_009077.1 identified by match to protein family HMM PF02397 YP_009078.1 identified by match to protein family HMM PF02563 YP_009079.1 identified by match to protein family HMM PF02706 YP_009081.1 identified by similarity to SP:P45754 YP_009083.1 identified by match to protein family HMM PF01522 YP_009084.1 identified by similarity to GB:CAD85710.1 YP_009085.1 identified by match to protein family HMM PF01041 YP_009086.1 identified by match to protein family HMM PF00535 YP_009088.1 identified by similarity to SP:Q02729; match to protein family HMM PF04932 YP_009089.1 identified by match to protein family HMM PF01943 YP_009090.1 identified by similarity to GP:28806454 YP_009091.1 identified by match to protein family HMM PF00534 YP_009092.1 identified by similarity to OMNI:NTL01RSA1012 YP_009093.1 identified by similarity to SP:Q58464; match to protein family HMM PF00132 YP_009094.1 identified by match to protein family HMM PF00534 YP_009097.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_009098.1 identified by match to protein family HMM PF02012 YP_009099.1 identified by similarity to OMNI:NTL01ATA1012 YP_009100.1 identified by match to protein family HMM PF01757 YP_009101.1 identified by similarity to OMNI:NTL03PA04839 YP_009102.1 identified by similarity to OMNI:NTL01ATA1012 YP_009103.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_009104.1 identified by similarity to GP:2598023 YP_009105.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_009106.1 identified by match to protein family HMM PF01734 YP_009107.1 identified by match to protein family HMM PF01757 YP_009109.1 identified by match to protein family HMM PF00535 YP_009110.1 identified by similarity to OMNI:NTL01TE2386 YP_009111.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_009112.1 identified by similarity to SP:P71237; match to protein family HMM PF00534 YP_009113.1 identified by similarity to SP:O05272; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_009114.1 identified by match to protein family HMM PF00685 YP_009115.1 identified by match to protein family HMM PF04055 YP_009116.1 identified by similarity to GP:22759343; match to protein family HMM PF00005 YP_009117.1 identified by match to protein family HMM PF01061 YP_009119.1 identified by similarity to GP:11992144; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_009120.1 identified by match to protein family HMM PF00535 YP_009121.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_009122.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_009125.1 identified by similarity to OMNI:NTL01ST4343 YP_009126.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_009127.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369 YP_009128.1 identified by similarity to OMNI:VCA0212 YP_009130.1 identified by similarity to SP:Q46831 YP_009131.1 identified by similarity to SP:P45737; match to protein family HMM PF00199 YP_009133.1 identified by similarity to SP:P17551; match to protein family HMM PF02417 YP_009134.1 identified by similarity to SP:P17552 YP_009136.1 identified by similarity to OMNI:AF1325; match to protein family HMM PF00083 YP_009137.1 identified by match to protein family HMM PF04055 YP_009138.1 identified by similarity to SP:Q8TW08 YP_009139.1 identified by match to protein family HMM PF00672 YP_009140.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_009141.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_009142.1 identified by similarity to GP:1181175; match to protein family HMM PF01311 YP_009143.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_009144.1 identified by similarity to SP:P31487; similarity to SP:P35533; match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_009145.1 identified by similarity to GB:BAC59928.1 YP_009146.1 identified by match to protein family HMM PF02523 YP_009149.1 identified by similarity to GB:AAO91772.1 YP_009151.1 identified by similarity to GB:AAL72351.1 YP_009152.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958 YP_009153.1 identified by similarity to SP:Q01245 YP_009155.1 identified by similarity to PIR:D86044; match to protein family HMM TIGR02105 YP_009156.1 identified by similarity to GP:10189650 YP_009157.1 identified by similarity to SP:Q01251; match to protein family HMM PF01514 YP_009158.1 identified by similarity to GB:AAC38611.1 YP_009159.1 identified by similarity to SP:P40290; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026 YP_009160.1 identified by similarity to GB:BAC59933.1 YP_009161.1 identified by match to protein family HMM PF01052 YP_009162.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_009163.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_009164.1 identified by similarity to OMNI:NTL01SS01077 YP_009165.1 identified by match to protein family HMM PF01464 YP_009166.1 identified by similarity to OMNI:CP0368 YP_009169.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587 YP_009170.1 identified by match to protein family HMM TIGR01876 YP_009171.1 identified by match to protein family HMM TIGR01863 YP_009172.1 identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595 YP_009173.1 identified by match to protein family HMM TIGR00372 YP_009174.1 identified by similarity to OMNI:CT1130; match to protein family HMM PF01867; match to protein family HMM TIGR00287 YP_009175.1 identified by similarity to OMNI:CT1129; match to protein family HMM PF02647; match to protein family HMM TIGR01573 YP_009176.1 identified by similarity to SP:P24198; match to protein family HMM PF02535 YP_009177.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_009178.1 identified by match to protein family HMM PF02518 YP_009179.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_009183.1 identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817 YP_009185.1 identified by similarity to GB:AAP07854.1 YP_009187.1 identified by similarity to GP:10189658 YP_009188.1 identified by match to protein family HMM PF00083 YP_009190.1 identified by match to protein family HMM PF00497 YP_009192.1 identified by similarity to GP:11127715