-- dump date 20240506_002238 -- class Genbank::Contig -- table contig_comment -- id comment NC_014216.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001940.1.REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard MuyzerREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline salineREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in EgyptREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: EgyptREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001940.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084538 Source DNA and bacteria available from Gerard Muyzer (g.muijzer@tudelft.nl) Contacts: Gerard Muyzer (g.muijzer@tudelft.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000092205.1-RS_2024_03_22 Annotation Date :: 03/22/2024 16:31:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,735 CDSs (total) :: 2,678 Genes (coding) :: 2,663 CDSs (with protein) :: 2,663 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 4 Pseudo Genes (total) :: 15 CDSs (without protein) :: 15 Pseudo Genes (ambiguous residues) :: 0 of 15 Pseudo Genes (frameshifted) :: 2 of 15 Pseudo Genes (incomplete) :: 12 of 15 Pseudo Genes (internal stop) :: 2 of 15 Pseudo Genes (multiple problems) :: 1 of 15 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Desulfurivibrio alkaliphilus AHT2 Culture Collection ID :: DSM 19089 GOLD Stamp ID :: Gi02998 Funding Program :: DOE-CSP 2008 Isolation Site :: Sediments from a highly alkaline saline soda lake in Egypt Isolation Country :: Egypt Latitude :: 30.418502 Longitude :: 30.333323 Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None ##Metadata-END## COMPLETENESS: full length.