-- dump date   	20111121_011817
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002551490.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002551491.1	KEGG: ajs:Ajs_4145 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain
YP_002551492.1	KEGG: ajs:Ajs_4146 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein
YP_002551493.1	KEGG: ajs:Ajs_4147 hypothetical protein
YP_002551494.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_4148 GCN5-related N-acetyltransferase
YP_002551495.1	PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_4149 hypothetical protein
YP_002551496.1	TIGRFAM: OsmC family protein; PFAM: OsmC family protein; KEGG: ajs:Ajs_4150 OsmC family protein
YP_002551497.1	PFAM: protein of unknown function DUF72; KEGG: ajs:Ajs_4151 hypothetical protein
YP_002551498.1	PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase
YP_002551499.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002551500.1	PFAM: gamma-glutamyltranspeptidase; KEGG: ajs:Ajs_4154 gamma-glutamyltransferase 2
YP_002551501.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002551502.1	KEGG: ajs:Ajs_4156 hypothetical protein
YP_002551503.1	helicase involved in DNA repair and perhaps also replication
YP_002551504.1	KEGG: ajs:Ajs_4159 hypothetical protein
YP_002551505.1	KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_002551506.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ajs:Ajs_4161 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_002551507.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_4162 GntR family transcriptional regulator
YP_002551508.1	PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein
YP_002551509.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_002551510.1	KEGG: aav:Aave_0022 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; EAL domain protein; GAF domain protein
YP_002551511.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ajs:Ajs_0004 regulatory proteins, IclR
YP_002551512.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0005 hypothetical protein
YP_002551513.1	KEGG: ajs:Ajs_0006 hypothetical protein
YP_002551514.1	PFAM: protein of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein
YP_002551515.1	Required for efficient pilin antigenic variation
YP_002551516.1	PFAM: sodium:dicarboxylate symporter; KEGG: ajs:Ajs_0009 sodium:dicarboxylate symporter
YP_002551517.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0010 multi-sensor hybrid histidine kinase
YP_002551518.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_0011 two component LuxR family transcriptional regulator
YP_002551519.1	PFAM: nucleoside recognition domain protein; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein
YP_002551520.1	KEGG: ajs:Ajs_0013 hypothetical protein
YP_002551521.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_002551522.1	PFAM: protein of unknown function DUF1130; KEGG: ajs:Ajs_0015 hypothetical protein
YP_002551523.1	KEGG: ajs:Ajs_0016 hypothetical protein
YP_002551524.1	KEGG: ajs:Ajs_0017 MerR family transcriptional regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR
YP_002551525.1	PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_0018 heavy metal transport/detoxification protein
YP_002551526.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_0019 heavy metal translocating P-type ATPase
YP_002551527.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer
YP_002551528.1	PFAM: protein of unknown function DUF81; KEGG: dac:Daci_2500 hypothetical protein
YP_002551529.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ajs:Ajs_0022 NADH:flavin oxidoreductase/NADH oxidase
YP_002551531.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0023 glutathione S-transferase domain-containing protein
YP_002551532.1	PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_0024 hypothetical protein
YP_002551533.1	PFAM: NADPH-dependent FMN reductase; KEGG: ajs:Ajs_0025 NADPH-dependent FMN reductase
YP_002551534.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002551535.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002551536.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0028 lysine exporter protein LysE/YggA
YP_002551537.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_0029 chromosome segregation ATPase
YP_002551538.1	PFAM: protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein
YP_002551539.1	KEGG: ajs:Ajs_0031 chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_002551540.1	KEGG: ajs:Ajs_0032 methyltransferase type 12
YP_002551541.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ajs:Ajs_0033 peptidoglycan binding domain-containing protein
YP_002551542.1	KEGG: reh:H16_B2252 hypothetical protein
YP_002551543.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_0038 AraC family transcriptional regulator
YP_002551544.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0039 major facilitator superfamily transporter
YP_002551545.1	PFAM: ChaC family protein; KEGG: rru:Rru_A2776 ChaC-like protein
YP_002551546.1	TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: azc:AZC_4089 flavoprotein
YP_002551547.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: pmu:PM1125 hypothetical protein
YP_002551548.1	TIGRFAM: CRISPR-associated protein Cas1; protein of unknown function DUF48; PFAM: protein of unknown function DUF48; KEGG: asu:Asuc_0377 CRISPR-associated Cas1 family protein
YP_002551549.1	TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: pmu:PM1127 hypothetical protein
YP_002551550.1	PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0040 fis family transcriptional regulator
YP_002551551.1	KEGG: ajs:Ajs_0042 calcium-binding EF-hand-containing protein
YP_002551552.1	TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ajs:Ajs_0043 ATP:cob(I)alamin adenosyltransferase
YP_002551553.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 hypothetical protein
YP_002551554.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_0045 extracellular ligand-binding receptor
YP_002551555.1	KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase
YP_002551556.1	KEGG: ajs:Ajs_0047 hypothetical protein
YP_002551557.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ajs:Ajs_0048 uracil-xanthine permease
YP_002551558.1	KEGG: ajs:Ajs_0049 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; chemotaxis sensory transducer
YP_002551559.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ajs:Ajs_0050 radical SAM domain-containing protein
YP_002551560.1	KEGG: dac:Daci_1599 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein
YP_002551561.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ajs:Ajs_0052 hypothetical protein
YP_002551562.1	KEGG: ajs:Ajs_0053 hypothetical protein
YP_002551563.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_002551564.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bav:BAV1031 LysR-family transcriptional regulator
YP_002551565.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mrd:Mrad2831_3262 L-carnitine dehydratase/bile acid-inducible protein F
YP_002551566.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mrd:Mrad2831_3261 acyl-CoA dehydrogenase domain-containing protein
YP_002551567.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mrd:Mrad2831_3260 acyl-CoA dehydrogenase domain-containing protein
YP_002551568.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_3272 enoyl-CoA hydratase
YP_002551569.1	PFAM: conserved hypothetical protein; KEGG: atc:AGR_pAT_473 hypothetical protein
YP_002551570.1	TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ajs:Ajs_0064 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_002551571.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: ajs:Ajs_0065 septum site-determining protein MinC
YP_002551572.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_0066 septum site-determining protein MinD
YP_002551573.1	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: ajs:Ajs_0067 cell division topological specificity factor MinE
YP_002551574.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein
YP_002551575.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_0069 alpha/beta hydrolase fold
YP_002551576.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_0070 extracellular ligand-binding receptor
YP_002551577.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_0071 D-amino-acid dehydrogenase
YP_002551578.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_002551579.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator
YP_002551580.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_0074 UspA domain-containing protein
YP_002551581.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0075 metallophosphoesterase
YP_002551582.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator
YP_002551583.1	KEGG: ajs:Ajs_0077 hypothetical protein
YP_002551584.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_002551585.1	KEGG: ajs:Ajs_0079 hypothetical protein
YP_002551586.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_002551587.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein
YP_002551588.1	KEGG: ajs:Ajs_0082 hypothetical protein
YP_002551589.1	PFAM: homocysteine S-methyltransferase; KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent)
YP_002551590.1	KEGG: ajs:Ajs_0084 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: helicase domain protein; HRDC domain protein; DEAD-like helicases
YP_002551591.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein
YP_002551592.1	KEGG: ajs:Ajs_0086 hypothetical protein
YP_002551593.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002551594.1	KEGG: ajs:Ajs_0091 hemerythrin HHE cation binding domain-containing protein
YP_002551595.1	KEGG: ajs:Ajs_0092 nitric oxide reductase large subunit
YP_002551596.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_002551597.1	KEGG: ajs:Ajs_0094 hypothetical protein
YP_002551598.1	KEGG: ajs:Ajs_0095 L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_002551599.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002551600.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0097 hypothetical protein
YP_002551601.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase
YP_002551602.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0099 hypothetical protein
YP_002551603.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0100 hypothetical protein
YP_002551604.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0101 hypothetical protein
YP_002551605.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0102 hypothetical protein
YP_002551606.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein
YP_002551607.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase
YP_002551608.1	KEGG: ajs:Ajs_0105 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002551609.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR
YP_002551610.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002551611.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0108 hypothetical protein
YP_002551612.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR
YP_002551613.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ajs:Ajs_0111 regulatory proteins, IclR
YP_002551614.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F
YP_002551615.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0113 major facilitator superfamily transporter
YP_002551616.1	PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_0114 HpcH/HpaI aldolase
YP_002551617.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 putative metallothiol transferase
YP_002551618.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0115 hypothetical protein
YP_002551619.1	PFAM: MmgE/PrpD family protein; KEGG: ajs:Ajs_0116 MmgE/PrpD family protein
YP_002551620.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F
YP_002551621.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0118 acyl-CoA dehydrogenase domain-containing protein
YP_002551622.1	KEGG: ajs:Ajs_0119 hypothetical protein
YP_002551623.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0120 short-chain dehydrogenase/reductase SDR
YP_002551624.1	PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_0121 dehydratase
YP_002551625.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0122 enoyl-CoA hydratase
YP_002551626.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase
YP_002551627.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002551628.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0125 hypothetical protein
YP_002551629.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0126 AMP-dependent synthetase and ligase
YP_002551630.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0127 hypothetical protein
YP_002551631.1	PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 hypothetical protein
YP_002551632.1	KEGG: ajs:Ajs_0129 thiolase
YP_002551633.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0130 acyl-CoA dehydrogenase domain-containing protein
YP_002551634.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0131 hypothetical protein
YP_002551635.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0132 LysR family transcriptional regulator
YP_002551636.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0133 L-carnitine dehydratase/bile acid-inducible protein F
YP_002551637.1	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin
YP_002551638.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ajs:Ajs_0135 Glu/Leu/Phe/Val dehydrogenase, C terminal
YP_002551639.1	PFAM: protein of unknown function DUF344; KEGG: ajs:Ajs_0136 hypothetical protein
YP_002551640.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0137 LysR family transcriptional regulator
YP_002551641.1	PFAM: transmembrane pair domain protein; KEGG: ajs:Ajs_0138 transmembrane pair domain-containing protein
YP_002551642.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0139 LysR family transcriptional regulator
YP_002551643.1	TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_0140 muconate and chloromuconate cycloisomerases
YP_002551644.1	KEGG: ajs:Ajs_0141 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase
YP_002551645.1	PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ajs:Ajs_0142 intradiol ring-cleavage dioxygenase
YP_002551646.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0143 hypothetical protein
YP_002551647.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ajs:Ajs_0144 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002551648.1	KEGG: ajs:Ajs_0145 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_002551649.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0146 sigma-54 dependent trancsriptional regulator
YP_002551650.1	KEGG: ajs:Ajs_0147 methionine synthase (B12-dependent); TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein
YP_002551651.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ajs:Ajs_0148 peptidoglycan binding domain-containing protein
YP_002551652.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: ajs:Ajs_0149 hypothetical protein
YP_002551653.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002551654.1	PFAM: ribonuclease BN; KEGG: ajs:Ajs_0151 ribonuclease BN
YP_002551655.1	PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_0152 17 kDa surface antigen
YP_002551656.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase
YP_002551657.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_0154 extracellular ligand-binding receptor
YP_002551658.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0155 inner-membrane translocator
YP_002551659.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0156 ABC transporter related
YP_002551660.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0157 ABC transporter related
YP_002551661.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0158 LysR family transcriptional regulator
YP_002551662.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0159 short-chain dehydrogenase/reductase SDR
YP_002551663.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_0160 methyl-accepting chemotaxis sensory transducer
YP_002551664.1	KEGG: ajs:Ajs_0161 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002551665.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0162 hypothetical protein
YP_002551666.1	PFAM: nitrogen regulatory protein P-II; KEGG: ajs:Ajs_0163 nitrogen regulatory protein P-II
YP_002551667.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ajs:Ajs_0164 ammonium transporter
YP_002551668.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_0165 gluconolactonase
YP_002551669.1	PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0166 FAD linked oxidase domain-containing protein
YP_002551670.1	PFAM: protein of unknown function DUF1275; KEGG: ajs:Ajs_0167 hypothetical protein
YP_002551671.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit
YP_002551672.1	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP
YP_002551673.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_0170 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002551674.1	PFAM: transcription activator effector binding; KEGG: ajs:Ajs_0171 transcription activator, effector binding
YP_002551675.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: ajs:Ajs_0172 helix-turn-helix, type 11 domain-containing protein
YP_002551676.1	PFAM: glutathione peroxidase; KEGG: ajs:Ajs_0173 glutathione peroxidase
YP_002551677.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0174 hypothetical protein
YP_002551678.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0175 hypothetical protein
YP_002551679.1	KEGG: ajs:Ajs_0176 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_002551680.1	KEGG: ajs:Ajs_0177 hypothetical protein
YP_002551681.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: rme:Rmet_4968 di-haem cytochrome c peroxidase
YP_002551682.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0178 glutathione S-transferase domain-containing protein
YP_002551683.1	KEGG: ajs:Ajs_0179 hypothetical protein
YP_002551684.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002551685.1	KEGG: ajs:Ajs_0181 hypothetical protein
YP_002551686.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002551687.1	KEGG: aav:Aave_0265 hypothetical protein
YP_002551688.1	KEGG: dac:Daci_0318 hypothetical protein
YP_002551689.1	PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1
YP_002551690.1	PFAM: glycosyl transferase family 25; KEGG: sdn:Sden_0207 glycosyl transferase family protein
YP_002551691.1	PFAM: O-antigen polymerase; KEGG: ajs:Ajs_0184 O-antigen polymerase
YP_002551692.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD
YP_002551693.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator
YP_002551694.1	PFAM: protein of unknown function DUF1228; KEGG: ajs:Ajs_0190 hypothetical protein
YP_002551695.1	PFAM: MOSC domain containing protein; KEGG: ajs:Ajs_0191 MOSC domain-containing protein
YP_002551696.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ajs:Ajs_0192 hypothetical protein
YP_002551697.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0193 integral membrane sensor signal transduction histidine kinase
YP_002551698.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_0194 two component transcriptional regulator
YP_002551699.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0199 major facilitator superfamily transporter
YP_002551700.1	PFAM: Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_0200 AraC family transcriptional regulator
YP_002551701.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 hypothetical protein
YP_002551702.1	KEGG: ajs:Ajs_0202 hypothetical protein
YP_002551703.1	PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p
YP_002551704.1	KEGG: neu:NE1984 putative transmembrane protein
YP_002551705.1	PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein
YP_002551706.1	PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3918 transposase, IS4 family protein
YP_002551707.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_0229 GntR family transcriptional regulator
YP_002551708.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein
YP_002551709.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0231 short-chain dehydrogenase/reductase SDR
YP_002551710.1	PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase
YP_002551711.1	KEGG: ajs:Ajs_0233 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_002551712.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002551713.1	KEGG: ajs:Ajs_0235 hypothetical protein
YP_002551714.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: ajs:Ajs_0236 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
YP_002551715.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002551716.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: ajs:Ajs_0238 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
YP_002551717.1	functions in MreBCD complex in some organisms
YP_002551718.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002551719.1	TIGRFAM: rod shape-determining protein MreD; KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein
YP_002551720.1	KEGG: ajs:Ajs_0242 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_002551721.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0243 hypothetical protein
YP_002551722.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0244 ABC transporter related
YP_002551723.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0245 polar amino acid ABC transporter, inner membrane subunit
YP_002551724.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0246 extracellular solute-binding protein
YP_002551725.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ajs:Ajs_0247 arginase
YP_002551726.1	PFAM: protein of unknown function DUF81; KEGG: ajs:Ajs_0248 hypothetical protein
YP_002551727.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase
YP_002551728.1	PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_0250 hypothetical protein
YP_002551729.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0251 ABC transporter related
YP_002551730.1	PFAM: Mammalian cell entry related domain protein; KEGG: ajs:Ajs_0252 hypothetical protein
YP_002551731.1	PFAM: protein of unknown function DUF330; KEGG: ajs:Ajs_0253 putative lipoprotein
YP_002551733.1	PFAM: CsbD family protein; KEGG: ajs:Ajs_0254 CsbD family protein
YP_002551734.1	KEGG: ajs:Ajs_0255 hypothetical protein
YP_002551735.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ajs:Ajs_0256 hemerythrin-like metal-binding protein
YP_002551736.1	KEGG: ajs:Ajs_0257 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein
YP_002551737.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ajs:Ajs_0258 multiple antibiotic resistance (MarC)-related proteins
YP_002551738.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0259 short-chain dehydrogenase/reductase SDR
YP_002551739.1	PFAM: dienelactone hydrolase; KEGG: ajs:Ajs_0260 carboxymethylenebutenolidase
YP_002551740.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0261 EmrB/QacA family drug resistance transporter
YP_002551741.1	PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein
YP_002551742.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_0263 RND efflux system outer membrane lipoprotein
YP_002551743.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ajs:Ajs_0264 MarR family transcriptional regulator
YP_002551744.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: ajs:Ajs_0265 Mg2+ transporter protein, CorA family protein
YP_002551745.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002551746.1	KEGG: ajs:Ajs_0267 biotin/lipoate A/B protein ligase
YP_002551747.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0268 hypothetical protein
YP_002551748.1	PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein
YP_002551749.1	KEGG: ajs:Ajs_0270 ferredoxin-like protein
YP_002551750.1	KEGG: ajs:Ajs_0271 putative transmembrane protein
YP_002551751.1	PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ajs:Ajs_0272 penicillin-binding protein 6
YP_002551752.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002551753.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002551754.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002551755.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002551756.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002551757.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002551758.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002551759.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002551760.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002551761.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002551762.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002551763.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002551764.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002551765.1	one of the stabilizing components for the large ribosomal subunit
YP_002551766.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002551767.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_0288 redoxin domain-containing protein
YP_002551768.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0289 GCN5-related N-acetyltransferase
YP_002551769.1	PFAM: cytochrome B561; KEGG: ajs:Ajs_0290 cytochrome b561
YP_002551770.1	PFAM: cytochrome c prime; KEGG: ajs:Ajs_0291 cytochrome c, class II
YP_002551771.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_0292 redoxin domain-containing protein
YP_002551772.1	KEGG: ajs:Ajs_0293 hypothetical protein
YP_002551773.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0294 major facilitator superfamily transporter
YP_002551774.1	PFAM: PTS system fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component
YP_002551775.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: ajs:Ajs_0296 phosphotransferase system, phosphocarrier protein HPr
YP_002551776.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase
YP_002551777.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002551778.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_002551779.1	PFAM: protein of unknown function DUF493; KEGG: ajs:Ajs_0300 hypothetical protein
YP_002551780.1	PFAM: ATP synthase I chain; KEGG: ajs:Ajs_0301 putative ATP synthase protein I
YP_002551781.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002551782.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_002551783.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002551784.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002551785.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002551786.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002551787.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002551788.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002551789.1	KEGG: ajs:Ajs_0310 putative mRNA 3-end processing factor
YP_002551790.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA
YP_002551791.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: ajs:Ajs_0312 DEAD/DEAH box helicase domain-containing protein
YP_002551792.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0313 metallophosphoesterase
YP_002551793.1	PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein
YP_002551794.1	PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein
YP_002551795.1	PFAM: LemA family protein; KEGG: ajs:Ajs_0316 LemA family protein
YP_002551796.1	KEGG: ajs:Ajs_0317 hypothetical protein
YP_002551797.1	KEGG: ajs:Ajs_0318 alpha/beta hydrolase fold
YP_002551798.1	KEGG: ajs:Ajs_0319 hypothetical protein
YP_002551799.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_0320 cytochrome c, class I
YP_002551800.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_0321 RND efflux system outer membrane lipoprotein
YP_002551801.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: aav:Aave_0388 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_002551802.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_0323 RND family efflux transporter MFP subunit
YP_002551803.1	PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: ajs:Ajs_0324 TetR family transcriptional regulator
YP_002551804.1	KEGG: ajs:Ajs_0331 hypothetical protein
YP_002551805.1	KEGG: ajs:Ajs_0332 hypothetical protein
YP_002551806.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nmu:Nmul_A2149 zinc-containing alcohol dehydrogenase superfamily protein
YP_002551807.1	KEGG: ajs:Ajs_0334 putative outer membrane protein
YP_002551808.1	PFAM: glutamine amidotransferase class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II
YP_002551809.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_002551810.1	KEGG: ajs:Ajs_0337 hypothetical protein
YP_002551811.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_002551812.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0339 LysR family transcriptional regulator
YP_002551813.1	KEGG: ajs:Ajs_0340 hypothetical protein
YP_002551814.1	KEGG: ajs:Ajs_0341 putative transmembrane protein
YP_002551815.1	PFAM: PsiF repeat protein; KEGG: ajs:Ajs_0342 PsiF repeat-containing protein
YP_002551816.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002551817.1	PFAM: Sporulation domain protein; KEGG: ajs:Ajs_0344 sporulation domain-containing protein
YP_002551818.1	PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0345 DsbA oxidoreductase
YP_002551819.1	TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: ajs:Ajs_0346 OstA family protein
YP_002551820.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0347 ABC transporter related
YP_002551821.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ajs:Ajs_0348 RNA polymerase, sigma 54 subunit, RpoN
YP_002551822.1	KEGG: ajs:Ajs_0349 hypothetical protein
YP_002551823.1	PFAM: putative RNA methylase; THUMP domain protein; KEGG: ajs:Ajs_0350 putative RNA methylase
YP_002551824.1	KEGG: ajs:Ajs_0351 hypothetical protein
YP_002551825.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ajs:Ajs_0352 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_002551826.1	PFAM: SEC-C motif domain protein; KEGG: ajs:Ajs_0353 SecC motif-containing protein
YP_002551827.1	PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein
YP_002551828.1	PFAM: phosphatidylglycerophosphatase A; KEGG: ajs:Ajs_0355 phosphatidylglycerophosphatase
YP_002551829.1	KEGG: ajs:Ajs_0356 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_002551830.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_002551831.1	PFAM: sodium/hydrogen exchanger; KEGG: ajs:Ajs_0358 sodium/hydrogen exchanger
YP_002551832.1	KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein
YP_002551833.1	protein associated with Co2+ and Mg2+ efflux
YP_002551834.1	KEGG: ajs:Ajs_0361 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
YP_002551835.1	KEGG: ajs:Ajs_0362 hypothetical protein
YP_002551836.1	TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_0363 phosphoglycolate phosphatase
YP_002551837.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: aav:Aave_2643 methyl-accepting chemotaxis sensory transducer
YP_002551838.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer
YP_002551839.1	KEGG: ajs:Ajs_0365 putative lipoprotein transmembrane
YP_002551840.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_002551841.1	PFAM: Chorismate mutase; KEGG: ajs:Ajs_0367 chorismate mutase
YP_002551842.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_002551843.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002551845.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_002551846.1	KEGG: ajs:Ajs_0371 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein
YP_002551847.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002551848.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0373 hypothetical protein
YP_002551849.1	TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: ajs:Ajs_0374 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
YP_002551850.1	KEGG: aav:Aave_0592 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_002551851.1	catalyzes branch migration in Holliday junction intermediates
YP_002551852.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0377 LysR family transcriptional regulator
YP_002551853.1	PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein
YP_002551854.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: ajs:Ajs_0379 adenylate cyclase
YP_002551855.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: ajs:Ajs_0380 4-hydroxybenzoate octaprenyltransferase
YP_002551856.1	KEGG: ajs:Ajs_0381 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent
YP_002551857.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: ajs:Ajs_0382 glycerol kinase
YP_002551858.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; regulatory protein Crp; KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator
YP_002551859.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dac:Daci_1025 ABC transporter related
YP_002551860.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0385 ABC transporter related
YP_002551862.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0386 binding-protein-dependent transport systems inner membrane component
YP_002551863.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0387 binding-protein-dependent transport systems inner membrane component
YP_002551864.1	KEGG: ajs:Ajs_0388 putative integral membrane protein
YP_002551865.1	KEGG: ajs:Ajs_0389 extracellular solute-binding protein
YP_002551866.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_0390 FAD dependent oxidoreductase
YP_002551867.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002551868.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002551869.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002551870.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_002551871.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002551872.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002551873.1	binds 5S rRNA along with protein L5 and L25
YP_002551874.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002551875.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002551876.1	late assembly protein
YP_002551877.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002551878.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002551879.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002551880.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002551881.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002551882.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002551883.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002551884.1	KEGG: ajs:Ajs_0408 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_002551885.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ajs:Ajs_0409 NAD-dependent epimerase/dehydratase
YP_002551886.1	KEGG: ajs:Ajs_0410 glycosyltransferase
YP_002551887.1	PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein
YP_002551888.1	KEGG: ajs:Ajs_0412 hypothetical protein
YP_002551889.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_0413 uroporphyrin-III C/tetrapyrrole methyltransferase
YP_002551890.1	PFAM: protein of unknown function UPF0102; KEGG: ajs:Ajs_0414 hypothetical protein
YP_002551891.1	KEGG: ajs:Ajs_0415 phosphoheptose isomerase
YP_002551892.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ajs:Ajs_0416 transport-associated
YP_002551893.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_0417 3-hydroxyisobutyrate dehydrogenase
YP_002551894.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_0418 twitching motility protein
YP_002551895.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: ajs:Ajs_0419 cyclic nucleotide-binding protein
YP_002551896.1	KEGG: ajs:Ajs_0420 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_002551897.1	PFAM: alanine racemase domain protein; KEGG: ajs:Ajs_0421 alanine racemase domain-containing protein
YP_002551898.1	PFAM: aminotransferase class V; aminotransferase class-III; KEGG: ajs:Ajs_0422 aminotransferase, class V
YP_002551899.1	PFAM: protein of unknown function DUF445; KEGG: ajs:Ajs_0423 hypothetical protein
YP_002551900.1	KEGG: ajs:Ajs_0424 hypothetical protein
YP_002551901.1	PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0425 FAD linked oxidase domain-containing protein
YP_002551902.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0647 transcriptional regulator, LysR family
YP_002551903.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_002551904.1	KEGG: aav:Aave_0649 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein; EAL domain protein
YP_002551905.1	PFAM: protein of unknown function DUF399; KEGG: ajs:Ajs_0430 hypothetical protein
YP_002551906.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
YP_002551907.1	PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: ajs:Ajs_0432 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ
YP_002551908.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_0433 two component LuxR family transcriptional regulator
YP_002551909.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter
YP_002551910.1	TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0435 nitrite transporter
YP_002551911.1	TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein
YP_002551912.1	TIGRFAM: nitrate reductase, beta subunit; KEGG: ajs:Ajs_0437 respiratory nitrate reductase beta subunit
YP_002551913.1	TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: ajs:Ajs_0438 respiratory nitrate reductase chaperone NarJ
YP_002551914.1	KEGG: ajs:Ajs_0439 respiratory nitrate reductase gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit
YP_002551915.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_0440 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002551916.1	PFAM: carbonic anhydrase; KEGG: ajs:Ajs_0441 carbonate dehydratase
YP_002551917.1	PFAM: NnrS family protein; KEGG: ajs:Ajs_0442 NnrS family protein
YP_002551918.1	PFAM: nitroreductase; KEGG: ajs:Ajs_0443 nitroreductase
YP_002551919.1	KEGG: ajs:Ajs_0444 hypothetical protein
YP_002551920.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ajs:Ajs_0445 hemerythrin HHE cation binding domain-containing protein
YP_002551921.1	KEGG: ajs:Ajs_0446 hypothetical protein
YP_002551922.1	KEGG: ajs:Ajs_0447 hypothetical protein
YP_002551923.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ajs:Ajs_0448 IclR family transcriptional regulator
YP_002551924.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase
YP_002551925.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0450 hypothetical protein
YP_002551926.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase
YP_002551927.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_0452 extracellular ligand-binding receptor
YP_002551928.1	KEGG: ajs:Ajs_0453 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002551929.1	KEGG: ajs:Ajs_0454 hypothetical protein
YP_002551930.1	PFAM: acyl-coA-binding protein ACBP; KEGG: ajs:Ajs_0455 acyl-CoA-binding protein
YP_002551931.1	KEGG: ajs:Ajs_0456 putative zinc protease protein
YP_002551932.1	PFAM: methyladenine glycosylase; KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I
YP_002551933.1	KEGG: ajs:Ajs_0458 hypothetical protein
YP_002551934.1	KEGG: ajs:Ajs_0459 hypothetical protein
YP_002551935.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase
YP_002551936.1	PFAM: Domain of unknown function DUF1840; KEGG: ajs:Ajs_0461 hypothetical protein
YP_002551937.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0462 hypothetical protein
YP_002551938.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0463 hypothetical protein
YP_002551939.1	KEGG: ajs:Ajs_0464 putative phenylacetate-CoA ligase
YP_002551940.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0465 ABC transporter related
YP_002551941.1	KEGG: ajs:Ajs_0466 hypothetical protein
YP_002551942.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0467 inner-membrane translocator
YP_002551943.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0468 inner-membrane translocator
YP_002551944.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0469 ABC transporter related
YP_002551945.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase
YP_002551946.1	PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0471 peptidoglycan binding domain-containing protein
YP_002551947.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator
YP_002551948.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein
YP_002551949.1	molecular chaperone
YP_002551950.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0476 hypothetical protein
YP_002551951.1	KEGG: ajs:Ajs_0477 hypothetical protein
YP_002551952.1	KEGG: ajs:Ajs_0478 hypothetical protein
YP_002551953.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_002551954.1	PFAM: tyrosine protein kinase; aminoglycoside phosphotransferase; UspA domain protein; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ajs:Ajs_0480 serine/threonine protein kinase
YP_002551955.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0481 metallophosphoesterase
YP_002551956.1	TIGRFAM: OsmC family protein; PFAM: OsmC family protein; KEGG: ajs:Ajs_0482 OsmC family protein
YP_002551957.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ajs:Ajs_0483 MarR family transcriptional regulator
YP_002551958.1	PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_3719 2-dehydro-3-deoxyglucarate aldolase
YP_002551959.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_002551960.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: ajs:Ajs_3717 glucose-methanol-choline oxidoreductase
YP_002551961.1	KEGG: ajs:Ajs_3716 hypothetical protein
YP_002551962.1	KEGG: ajs:Ajs_3715 hypothetical protein
YP_002551963.1	PFAM: GAF domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; SMART: GAF domain protein; KEGG: ajs:Ajs_3714 putative GAF sensor protein
YP_002551964.1	KEGG: pol:Bpro_0631 hypothetical protein
YP_002551965.1	TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_3712 ABC transporter
YP_002551966.1	KEGG: ajs:Ajs_3710 hypothetical protein
YP_002551967.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_002551968.1	KEGG: ajs:Ajs_3708 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; EAL domain protein
YP_002551969.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter
YP_002551970.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_002551971.1	PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: ajs:Ajs_3705 DEAD/DEAH box helicase domain-containing protein
YP_002551972.1	PFAM: protein of unknown function DUF81; KEGG: ajs:Ajs_3704 hypothetical protein
YP_002551973.1	PFAM: protein of unknown function UPF0054; KEGG: ajs:Ajs_3702 hypothetical protein
YP_002551974.1	PFAM: PhoH family protein; KEGG: ajs:Ajs_3701 PhoH family protein
YP_002551975.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002551976.1	KEGG: ajs:Ajs_3699 endoproteinase Arg-C
YP_002551977.1	KEGG: ajs:Ajs_3698 DnaK-related protein
YP_002551978.1	KEGG: ajs:Ajs_3696 putative heat-shock chaperone protein
YP_002551979.1	KEGG: ajs:Ajs_3695 hypothetical protein
YP_002551980.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002551981.1	PFAM: fatty acid hydroxylase; YhhN family protein; KEGG: ajs:Ajs_3693 YhhN family protein
YP_002551982.1	PFAM: alanine racemase domain protein; KEGG: ajs:Ajs_0490 alanine racemase domain-containing protein
YP_002551983.1	PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_0491 phosphoglycerate mutase
YP_002551984.1	KEGG: ajs:Ajs_0492 hypothetical protein
YP_002551985.1	KEGG: ajs:Ajs_0493 hypothetical protein
YP_002551986.1	PFAM: PP-loop domain protein; KEGG: ajs:Ajs_0494 PP-loop domain-containing protein
YP_002551987.1	PFAM: dihydroneopterin aldolase; KEGG: ajs:Ajs_0495 dihydroneopterin aldolase
YP_002551988.1	PFAM: dihydroneopterin aldolase; KEGG: eugene3.214320002.
YP_002551990.1	PFAM: protein of unknown function DUF185; KEGG: ajs:Ajs_0497 hypothetical protein
YP_002551991.1	PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: xcv:XCV0883 taurine dioxygenase
YP_002551992.1	KEGG: bph:Bphy_3603 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
YP_002551993.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cti:RALTA_B1991 putative taurine transporter, ABC superfamily, atp_binding component
YP_002551994.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_2483 ABC-type sulfonate/nitrate transport system permease protein
YP_002551995.1	KEGG: ajs:Ajs_0499 hypothetical protein
YP_002551996.1	PFAM: ROK family protein; KEGG: ajs:Ajs_0500 glucokinase
YP_002551997.1	KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20
YP_002551998.1	PFAM: glycoside hydrolase 15-related; KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related
YP_002551999.1	KEGG: ajs:Ajs_0503 HAD family hydrolase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase
YP_002552000.1	TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: ajs:Ajs_0504 thioredoxin
YP_002552001.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_0505 metal dependent phosphohydrolase
YP_002552002.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase
YP_002552003.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein
YP_002552004.1	TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ajs:Ajs_0508 5-formyltetrahydrofolate cyclo-ligase
YP_002552005.1	PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0509 lytic transglycosylase, catalytic
YP_002552006.1	PFAM: cytochrome B561; KEGG: ajs:Ajs_0510 cytochrome b561
YP_002552007.1	KEGG: ajs:Ajs_0511 putative signal peptide protein
YP_002552008.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: ajs:Ajs_0512 putative hydroxylase
YP_002552009.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase
YP_002552010.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor
YP_002552011.1	PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein
YP_002552012.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase
YP_002552013.1	PFAM: PGAP1 family protein; KEGG: ajs:Ajs_0517 PGAP1 family protein
YP_002552014.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_002552015.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0519 hypothetical protein
YP_002552016.1	KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_002552017.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_0521 AsnC family transcriptional regulator
YP_002552018.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase
YP_002552019.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_0523 CBS domain-containing protein
YP_002552020.1	Transfers the fatty acyl group on membrane lipoproteins
YP_002552021.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_002552022.1	PFAM: Beta-ketoacyl synthase; KEGG: ajs:Ajs_0526 beta-ketoacyl synthase
YP_002552023.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002552024.1	KEGG: ajs:Ajs_0528 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit
YP_002552025.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ajs:Ajs_0529 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
YP_002552026.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase
YP_002552027.1	PFAM: protein of unknown function DUF45; KEGG: ajs:Ajs_0531 hypothetical protein
YP_002552028.1	SMART: Rhodanese domain protein; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein
YP_002552029.1	PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Peptidoglycan-binding LysM; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM
YP_002552030.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002552031.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0535 TetR family transcriptional regulator
YP_002552032.1	TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: ajs:Ajs_0536 poly(hydroxyalkanoate) granule-associated protein
YP_002552033.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase
YP_002552034.1	KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain
YP_002552035.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_0539 glucose-1-phosphate thymidylyltransferase
YP_002552036.1	KEGG: ajs:Ajs_0540 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002552037.1	PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4016 glycosyl transferase, group 1
YP_002552038.1	PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4015 glycosyl transferase, group 1
YP_002552039.1	PFAM: Aldose 1-epimerase; KEGG: pol:Bpro_4014 aldose 1-epimerase
YP_002552040.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_4013 NAD-dependent epimerase/dehydratase
YP_002552041.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_4012 GDP-mannose 4,6-dehydratase
YP_002552042.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: cau:Caur_1741 glycosyl transferase family protein
YP_002552043.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bac:BamMC406_0768 methyltransferase type 11
YP_002552044.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bac:BamMC406_0767 ABC transporter related
YP_002552045.1	PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_1269 hypothetical protein
YP_002552046.1	KEGG: pol:Bpro_3999 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein
YP_002552047.1	PFAM: glycosyl transferase family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4
YP_002552048.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002552049.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_002552050.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0591 TetR family transcriptional regulator
YP_002552051.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0592 acyl-CoA dehydrogenase domain-containing protein
YP_002552052.1	KEGG: ajs:Ajs_0593 hypothetical protein
YP_002552053.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase
YP_002552054.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002552055.1	KEGG: ajs:Ajs_0596 putative hydrolase
YP_002552056.1	KEGG: ajs:Ajs_0597 hypothetical protein
YP_002552057.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002552058.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0599 hypothetical protein
YP_002552059.1	PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0600 hypothetical protein
YP_002552060.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0601 thioesterase superfamily protein
YP_002552061.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0602 ABC transporter related
YP_002552062.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase
YP_002552063.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit
YP_002552064.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit
YP_002552065.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ
YP_002552066.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0607 LysR family transcriptional regulator
YP_002552067.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0608 extracellular solute-binding protein
YP_002552068.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0609 extracellular solute-binding protein
YP_002552069.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit
YP_002552070.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit
YP_002552071.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0612 ABC transporter related
YP_002552072.1	catalyzes the formation of L-proline from L-ornithine
YP_002552073.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_0614 AsnC family transcriptional regulator
YP_002552074.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_0615 cytochrome c, class I
YP_002552075.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ajs:Ajs_0616 HAD family hydrolase
YP_002552076.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_002552077.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_002552078.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_002552079.1	KEGG: ajs:Ajs_0620 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_002552080.1	KEGG: ajs:Ajs_0621 hypothetical protein
YP_002552081.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ajs:Ajs_0622 rare lipoprotein A
YP_002552082.1	PFAM: protein of unknown function DUF519; KEGG: ajs:Ajs_0623 hypothetical protein
YP_002552083.1	PFAM: tyrosine protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ajs:Ajs_0624 protein kinase
YP_002552084.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002552085.1	forms a direct contact with the tRNA during translation
YP_002552086.1	KEGG: aav:Aave_4051 hypothetical protein
YP_002552087.1	PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0628 hypothetical protein
YP_002552088.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_002552089.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_002552090.1	PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B
YP_002552091.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002552092.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ajs:Ajs_0633 hemerythrin-like metal-binding protein
YP_002552093.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator
YP_002552094.1	KEGG: ajs:Ajs_0635 hypothetical protein
YP_002552095.1	TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
YP_002552096.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0637 histidine kinase
YP_002552097.1	KEGG: ajs:Ajs_0638 MerR family transcriptional regulator
YP_002552098.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: ajs:Ajs_0639 heat shock protein DnaJ domain-containing protein
YP_002552099.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator
YP_002552100.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002552101.1	PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: ajs:Ajs_0642 NmrA family protein
YP_002552102.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0643 LysR family transcriptional regulator
YP_002552103.1	KEGG: bwe:BcerKBAB4_2465 hypothetical protein
YP_002552104.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_0645 alcohol dehydrogenase
YP_002552105.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002552106.1	KEGG: ajs:Ajs_0647 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002552107.1	PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; KEGG: ajs:Ajs_0648 MCP methyltransferase, CheR-type
YP_002552108.1	PFAM: CheB methylesterase; KEGG: ajs:Ajs_0649 CheB methylesterase
YP_002552109.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_0650 response regulator receiver sensor signal transduction histidine kinase
YP_002552110.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_0651 response regulator receiver protein
YP_002552111.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: ajs:Ajs_0652 DNA-N1-methyladenine dioxygenase
YP_002552112.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase
YP_002552113.1	PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0654 DsbA oxidoreductase
YP_002552114.1	PFAM: CreA family protein; KEGG: ajs:Ajs_0655 CreA family protein
YP_002552115.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_002552116.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_002552117.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0658 ABC transporter related
YP_002552118.1	PFAM: Domain of unknown function DUF1854; KEGG: ajs:Ajs_0659 hypothetical protein
YP_002552119.1	KEGG: ajs:Ajs_0660 hypothetical protein
YP_002552120.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: ajs:Ajs_0661 signal transduction protein
YP_002552121.1	PFAM: 5-nucleotidase; KEGG: ajs:Ajs_0662 5-nucleotidase
YP_002552122.1	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ajs:Ajs_0663 general secretion pathway protein F
YP_002552123.1	TIGRFAM: Luciferase-like monooxygenase; PFAM: Luciferase-like monooxygenase; KEGG: ajs:Ajs_0664 luciferase family protein
YP_002552124.1	KEGG: ajs:Ajs_0665 hypothetical protein
YP_002552125.1	KEGG: ajs:Ajs_0666 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_002552126.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ajs:Ajs_0667 general secretion pathway protein D
YP_002552127.1	KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein
YP_002552128.1	KEGG: ajs:Ajs_0669 hypothetical protein
YP_002552129.1	PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L
YP_002552130.1	KEGG: ajs:Ajs_0671 general secretion pathway protein K
YP_002552131.1	KEGG: ajs:Ajs_0672 hypothetical protein
YP_002552132.1	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: ajs:Ajs_0673 general secretion pathway protein I
YP_002552133.1	TIGRFAM: general secretion pathway protein H; KEGG: ajs:Ajs_0674 general secretion pathway protein H
YP_002552134.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: ajs:Ajs_0675 general secretion pathway protein G
YP_002552135.1	KEGG: ajs:Ajs_0676 hypothetical protein
YP_002552136.1	PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_0677 phosphoglycerate mutase
YP_002552137.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: ajs:Ajs_0678 cobalamin-5'-phosphate synthase
YP_002552138.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_002552139.1	PFAM: OsmC family protein; KEGG: ajs:Ajs_0680 OsmC family protein
YP_002552140.1	KEGG: ajs:Ajs_0681 putative ubiquinone biosynthesis protein
YP_002552141.1	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0682 porin
YP_002552142.1	PFAM: porin Gram-negative type; KEGG: eugene3.77300001.
YP_002552143.1	PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_0685 extracellular solute-binding protein
YP_002552144.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0686 binding-protein-dependent transport systems inner membrane component
YP_002552145.1	KEGG: ajs:Ajs_0687 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002552146.1	PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_0688 extracellular solute-binding protein
YP_002552147.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0689 binding-protein-dependent transport systems inner membrane component
YP_002552148.1	KEGG: ajs:Ajs_0690 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002552149.1	KEGG: ajs:Ajs_0691 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002552150.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ajs:Ajs_0692 5'-nucleotidase
YP_002552151.1	PFAM: PEBP family protein; KEGG: ajs:Ajs_0693 PBP family phospholipid-binding protein
YP_002552152.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator
YP_002552153.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002552154.1	KEGG: ajs:Ajs_0696 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_002552155.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002552156.1	KEGG: ajs:Ajs_0698 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002552157.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002552158.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002552159.1	TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: ajs:Ajs_0701 cytidyltransferase-like protein
YP_002552160.1	KEGG: ajs:Ajs_0702 hypothetical protein
YP_002552161.1	PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_0703 hypothetical protein
YP_002552162.1	KEGG: NACA, TEBP; nascent polypeptide-associated complex   alpha subunit
YP_002552163.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002552164.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase
YP_002552165.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase
YP_002552166.1	PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3918 transposase, IS4 family protein
YP_002552167.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_0708 alpha/beta hydrolase fold
YP_002552168.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002552169.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I
YP_002552170.1	PFAM: ResB family protein; KEGG: ajs:Ajs_0711 ResB family protein
YP_002552171.1	TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: ajs:Ajs_0712 cytochrome c assembly protein
YP_002552172.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_002552173.1	PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: ajs:Ajs_0714 ferric reductase domain-containing protein
YP_002552174.1	PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0715 beta-lactamase domain-containing protein
YP_002552175.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ajs:Ajs_0716 diaminopimelate decarboxylase
YP_002552176.1	TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: ajs:Ajs_0728 frataxin family protein
YP_002552177.1	KEGG: ajs:Ajs_0729 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_002552178.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM
YP_002552179.1	PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein
YP_002552180.1	PFAM: Pilus assembly protein PilO; KEGG: ajs:Ajs_0732 pilus assembly protein, PilO
YP_002552181.1	PFAM: Pilus assembly protein PilP; KEGG: ajs:Ajs_0733 pilus assembly protein, PilQ
YP_002552182.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: ajs:Ajs_0734 type IV pilus secretin PilQ
YP_002552183.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002552184.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_002552185.1	PFAM: protein of unknown function DUF1415; KEGG: ajs:Ajs_0737 hypothetical protein
YP_002552186.1	KEGG: aav:Aave_1006 hypothetical protein
YP_002552187.1	PFAM: protein of unknown function DUF1568; KEGG: ajs:Ajs_0740 hypothetical protein
YP_002552188.1	PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit
YP_002552189.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_002552190.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0743 extracellular solute-binding protein
YP_002552191.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit
YP_002552192.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0745 ABC transporter related
YP_002552193.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002552194.1	TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: ajs:Ajs_0747 S-adenosylmethionine decarboxylase related
YP_002552195.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0748 ABC transporter related
YP_002552196.1	PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_0749 hypothetical protein
YP_002552197.1	PFAM: Mammalian cell entry related domain protein; KEGG: ajs:Ajs_0750 hypothetical protein
YP_002552198.1	PFAM: VacJ family lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein
YP_002552199.1	PFAM: toluene tolerance family protein; KEGG: ajs:Ajs_0752 toluene tolerance family protein
YP_002552200.1	KEGG: ajs:Ajs_0753 sulfate transporter/antisigma-factor antagonist STAS
YP_002552201.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0755 ABC transporter related
YP_002552202.1	PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_0756 ABC-2 type transporter
YP_002552203.1	PFAM: BolA family protein; KEGG: ajs:Ajs_0757 BolA family protein
YP_002552204.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002552205.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_002552206.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002552207.1	KEGG: ajs:Ajs_0761 hypothetical protein
YP_002552208.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002552209.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_002552210.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002552211.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002552212.1	KEGG: asa:ASA_0611 hypothetical protein
YP_002552213.1	KEGG: pzu:PHZ_p0238 metal ion efflux outer membrane factor protein family protein
YP_002552214.1	PFAM: glycosyl transferase family 2; chitin synthase; KEGG: vpa:VPA0393 hypothetical protein
YP_002552215.1	KEGG: sbn:Sbal195_0447 hypothetical protein
YP_002552216.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: aav:Aave_1044 UDP-galactose 4-epimerase
YP_002552217.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002552218.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_002552219.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_002552220.1	KEGG: ajs:Ajs_0778 putative transmembrane protein
YP_002552221.1	PFAM: Patatin; KEGG: ajs:Ajs_0779 patatin
YP_002552222.1	PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0780 histidine triad (HIT) protein
YP_002552223.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_002552224.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ajs:Ajs_0782 sec-independent translocase
YP_002552225.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: ajs:Ajs_0783 sec-independent protein translocase TatC
YP_002552226.1	KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_002552227.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: ajs:Ajs_0785 ferric reductase domain-containing protein
YP_002552228.1	PFAM: protein of unknown function DUF34; KEGG: ajs:Ajs_0786 hypothetical protein
YP_002552229.1	KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_002552230.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_002552231.1	KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; Ubiquinol-cytochrome c reductase iron-sulfur subunit
YP_002552232.1	PFAM: Cytochrome b/b6 domain; KEGG: ajs:Ajs_0790 cytochrome b/b6 domain-containing protein
YP_002552233.1	PFAM: cytochrome c1; KEGG: ajs:Ajs_0791 cytochrome c1
YP_002552234.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0792 glutathione S-transferase domain-containing protein
YP_002552235.1	PFAM: Stringent starvation protein B; KEGG: ajs:Ajs_0793 stringent starvation protein B
YP_002552236.1	KEGG: ajs:Ajs_0794 hypothetical protein
YP_002552237.1	PFAM: Peptidase M23; KEGG: ajs:Ajs_0795 peptidase M23B
YP_002552238.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002552239.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_002552240.1	PFAM: protein of unknown function DUF815; KEGG: ajs:Ajs_0798 hypothetical protein
YP_002552241.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_0799 NUDIX hydrolase
YP_002552242.1	PFAM: protein of unknown function DUF329; KEGG: ajs:Ajs_0800 hypothetical protein
YP_002552243.1	PFAM: protein of unknown function DUF1342; KEGG: ajs:Ajs_0801 hypothetical protein
YP_002552244.1	KEGG: ajs:Ajs_0802 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_002552245.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ajs:Ajs_0803 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
YP_002552246.1	PFAM: type II secretion system protein; KEGG: ajs:Ajs_0804 type II secretion system protein
YP_002552247.1	KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase
YP_002552248.1	PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_0840 dimethylallyltranstransferase
YP_002552249.1	TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: ajs:Ajs_0841 50S ribosomal protein L21P
YP_002552250.1	involved in the peptidyltransferase reaction during translation
YP_002552251.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002552252.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002552253.1	hydrolyzes diadenosine polyphosphate
YP_002552254.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002552255.1	PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic
YP_002552256.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ajs:Ajs_0848 hypothetical protein
YP_002552257.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ajs:Ajs_0849 glutaredoxin-like protein
YP_002552258.1	TIGRFAM: modification methylase, HemK family; Methyltransferase type 12; PFAM: putative RNA methylase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_0850 HemK family modification methylase
YP_002552259.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002552260.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002552261.1	KEGG: ajs:Ajs_0853 hypothetical protein
YP_002552262.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_0854 LysR family transcriptional regulator
YP_002552263.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0855 hypothetical protein
YP_002552264.1	PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase
YP_002552265.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel
YP_002552266.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ajs:Ajs_0858 glycerophosphodiester phosphodiesterase
YP_002552267.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0859 ABC transporter related
YP_002552268.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0860 binding-protein-dependent transport systems inner membrane component
YP_002552269.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0861 binding-protein-dependent transport systems inner membrane component
YP_002552270.1	PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_0862 extracellular solute-binding protein
YP_002552271.1	PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase
YP_002552272.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: ajs:Ajs_0864 FAD linked oxidase domain-containing protein
YP_002552273.1	PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein
YP_002552274.1	PFAM: protein of unknown function DUF971; KEGG: ajs:Ajs_0866 hypothetical protein
YP_002552275.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_0867 ubiquinone/menaquinone biosynthesis methyltransferases
YP_002552276.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44
YP_002552277.1	KEGG: ajs:Ajs_0869 hypothetical protein
YP_002552278.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_002552279.1	PFAM: Na+/solute symporter; KEGG: ajs:Ajs_0871 Na+/solute symporter
YP_002552280.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: ajs:Ajs_0872 FmdB family regulatory protein
YP_002552281.1	PFAM: protein of unknown function DUF502; KEGG: ajs:Ajs_0873 hypothetical protein
YP_002552282.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002552283.1	KEGG: ajs:Ajs_0875 hypothetical protein
YP_002552284.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_0876 NUDIX hydrolase
YP_002552285.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_0877 endonuclease/exonuclease/phosphatase
YP_002552286.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_0878 phospholipase D/transphosphatidylase
YP_002552287.1	PFAM: GTP cyclohydrolase I; KEGG: ajs:Ajs_0879 GTP cyclohydrolase
YP_002552288.1	PFAM: BLUF domain protein; KEGG: ajs:Ajs_0880 BLUF domain-containing protein
YP_002552289.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0881 hypothetical protein
YP_002552290.1	KEGG: ajs:Ajs_0882 hypothetical protein
YP_002552291.1	KEGG: ajs:Ajs_0883 hypothetical protein
YP_002552292.1	KEGG: ajs:Ajs_0884 hypothetical protein
YP_002552293.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002552294.1	PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_0887 extracellular solute-binding protein
YP_002552295.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0888 ABC transporter related
YP_002552296.1	KEGG: ajs:Ajs_0889 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002552297.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0890 binding-protein-dependent transport systems inner membrane component
YP_002552298.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0891 binding-protein-dependent transport systems inner membrane component
YP_002552299.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_0892 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002552300.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002552301.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002552302.1	KEGG: ajs:Ajs_0895 fis family transcriptional regulator; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_002552303.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002552304.1	KEGG: ajs:Ajs_0897 putative lipoprotein
YP_002552305.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ajs:Ajs_0898 TPR repeat-containing protein
YP_002552306.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002552307.1	KEGG: ajs:Ajs_0900 hypothetical protein
YP_002552308.1	KEGG: ajs:Ajs_0901 A/G-specific DNA-adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase MutY; SMART: HhH-GPD family protein; iron-sulfur cluster loop
YP_002552309.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0902 hypothetical protein
YP_002552310.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: ajs:Ajs_0903 DNA repair protein RecN
YP_002552311.1	catalyzes the phosphorylation of NAD to NADP
YP_002552314.1	KEGG: aav:Aave_2389 hypothetical protein
YP_002552319.1	KEGG: xcv:XCV2456 putative phage-related protein
YP_002552320.1	KEGG: rpi:Rpic_1393 hypothetical protein
YP_002552321.1	KEGG: xfa:XF1869 hypothetical protein
YP_002552322.1	PFAM: Zonular occludens toxin; KEGG: rpi:Rpic_1399 zonular occludens toxin
YP_002552324.1	PFAM: Resolvase domain; KEGG: aav:Aave_3594 resolvase, N-terminal domain
YP_002552325.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_002552326.1	KEGG: xoo:XOO0599 phage integrase family site specific recombinase
YP_002552327.1	PFAM: Endoribonuclease L-PSP; KEGG: psp:PSPPH_2438 translation initiation inhibitor
YP_002552328.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_1308 transcriptional regulator, LysR family
YP_002552329.1	KEGG: ajs:Ajs_0916 hypothetical protein
YP_002552330.1	KEGG: ajs:Ajs_0917 hypothetical protein
YP_002552331.1	PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_0918 isochorismatase hydrolase
YP_002552332.1	KEGG: ajs:Ajs_0919 hypothetical protein
YP_002552333.1	KEGG: ajs:Ajs_0920 hypothetical protein
YP_002552334.1	KEGG: ajs:Ajs_0921 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002552335.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002552336.1	KEGG: ajs:Ajs_0923 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
YP_002552337.1	PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_0924 protein phosphatase 2C domain-containing protein
YP_002552338.1	PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ajs:Ajs_0925 serine/threonine protein kinase
YP_002552339.1	PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ajs:Ajs_0926 hypothetical protein
YP_002552340.1	Essential for recycling GMP and indirectly, cGMP
YP_002552341.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002552342.1	KEGG: ajs:Ajs_0949 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_002552343.1	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_0950 transcription elongation factor GreB
YP_002552344.1	KEGG: ajs:Ajs_0951 hypothetical protein
YP_002552345.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002552346.1	KEGG: ajs:Ajs_0953 polynucleotide phosphorylase/polyadenylase; TIGRFAM: Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: RNA binding S1 domain protein; KH domain protein
YP_002552347.1	TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_0954 alcohol dehydrogenase
YP_002552348.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002552349.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: ajs:Ajs_0956 protein translocase subunit SecG
YP_002552350.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_002552351.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002552352.1	KEGG: ajs:Ajs_0959 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_002552353.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002552354.1	KEGG: ajs:Ajs_0961 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit
YP_002552355.1	KEGG: ajs:Ajs_0962 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
YP_002552356.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002552357.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ajs:Ajs_0964 respiratory-chain NADH dehydrogenase, subunit 1
YP_002552358.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002552359.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: ajs:Ajs_0966 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_002552360.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ajs:Ajs_0967 NADH-ubiquinone oxidoreductase, chain 4L
YP_002552361.1	KEGG: aav:Aave_1274 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)
YP_002552362.1	KEGG: ajs:Ajs_0969 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_002552363.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002552364.1	KEGG: ajs:Ajs_0971 putative transmembrane protein
YP_002552365.1	PFAM: protein of unknown function DUF1178; KEGG: ajs:Ajs_0972 hypothetical protein
YP_002552366.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0973 ABC transporter related
YP_002552367.1	KEGG: ajs:Ajs_0974 hypothetical protein
YP_002552368.1	PFAM: ABC transporter related; KEGG: ajs:Ajs_0975 ABC-type transport system involved in cytochrome c biogenesis ATPase component-like protein
YP_002552369.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0976 lysine exporter protein LysE/YggA
YP_002552370.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_002552371.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL
YP_002552372.1	PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_0979 17 kDa surface antigen
YP_002552373.1	PFAM: SNARE associated Golgi protein; KEGG: ajs:Ajs_0980 DedA protein (DSG-1 protein)
YP_002552374.1	PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_0979 17 kDa surface antigen
YP_002552375.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ajs:Ajs_0982 cupin 2 domain-containing protein
YP_002552376.1	KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin
YP_002552377.1	PFAM: protein of unknown function UPF0079; KEGG: dac:Daci_5126 hypothetical protein
YP_002552378.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: ajs:Ajs_0985 putative iron-sulfur cluster binding protein
YP_002552379.1	PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_0986 auxin efflux carrier
YP_002552380.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0987 hypothetical protein
YP_002552381.1	TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ajs:Ajs_0988 tyrosine recombinase XerD
YP_002552382.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0989 hypothetical protein
YP_002552383.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: ajs:Ajs_0990 diguanylate phosphodiesterase
YP_002552384.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: ajs:Ajs_0991 diguanylate phosphodiesterase
YP_002552385.1	PFAM: protein of unknown function DUF455; KEGG: ajs:Ajs_0992 hypothetical protein
YP_002552386.1	KEGG: ajs:Ajs_0993 transferase hexapeptide protein
YP_002552387.1	PFAM: Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein
YP_002552388.1	KEGG: ajs:Ajs_0995 hypothetical protein
YP_002552389.1	PFAM: Septum formation initiator; KEGG: ajs:Ajs_0996 cell division protein FtsB
YP_002552390.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002552391.1	PFAM: protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein
YP_002552392.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_002552393.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002552394.1	KEGG: ajs:Ajs_1001 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein
YP_002552395.1	catalyzes the formation of dUMP from dUTP
YP_002552396.1	PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_1003 17 kDa surface antigen
YP_002552397.1	KEGG: ajs:Ajs_1004 fkbp-type peptidyl-prolyl cis-trans isomerase
YP_002552398.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: ajs:Ajs_1005 cupin 4 family protein
YP_002552399.1	KEGG: ajs:Ajs_1006 hypothetical protein
YP_002552400.1	PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_1008 beta-lactamase domain-containing protein
YP_002552401.1	PFAM: NlpBDapX family lipoprotein; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein
YP_002552402.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002552403.1	KEGG: ajs:Ajs_1011 methyltransferase type 12
YP_002552404.1	KEGG: ajs:Ajs_1012 hypothetical protein
YP_002552405.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1013 major facilitator superfamily transporter
YP_002552406.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002552407.1	PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_1015 lytic transglycosylase, catalytic
YP_002552408.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002552409.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_1017 methyl-accepting chemotaxis sensory transducer
YP_002552410.1	PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP
YP_002552411.1	TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: vei:Veis_0403 DNA internalization-related competence protein ComEC/Rec2
YP_002552412.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: ajs:Ajs_1020 hypothetical protein
YP_002552413.1	KEGG: ajs:Ajs_1021 hypothetical protein
YP_002552414.1	PFAM: protein of unknown function DUF403; KEGG: ajs:Ajs_1021 hypothetical protein
YP_002552415.1	KEGG: ajs:Ajs_1022 hypothetical protein
YP_002552416.1	KEGG: ajs:Ajs_1023 hypothetical protein
YP_002552417.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1024 LysR family transcriptional regulator
YP_002552418.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: aav:Aave_1361 alpha/beta hydrolase fold-3 domain protein
YP_002552419.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter, RND family, MFP subunit
YP_002552420.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: aav:Aave_1363 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_002552421.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_1364 RND efflux system, outer membrane lipoprotein, NodT family
YP_002552422.1	PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1026 2,5-dioxopentanoate dehydrogenase (NAD+)
YP_002552423.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_1027 TonB-dependent siderophore receptor
YP_002552424.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_1028 TonB-dependent siderophore receptor
YP_002552425.1	KEGG: ajs:Ajs_1029 hypothetical protein
YP_002552426.1	KEGG: ajs:Ajs_1030 hypothetical protein
YP_002552427.1	PFAM: PepSY-associated TM helix domain protein; KEGG: ajs:Ajs_1031 PepSY-associated TM helix domain-containing protein
YP_002552428.1	KEGG: ajs:Ajs_1032 putative iron uptake protein
YP_002552429.1	KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_002552430.1	KEGG: ajs:Ajs_1034 putative transmembrane protein
YP_002552431.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein
YP_002552432.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit
YP_002552433.1	PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_1037 farnesyl-diphosphate synthase
YP_002552434.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002552435.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_1039 TRAP dicarboxylate transporter-DctP subunit
YP_002552436.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_1040 TRAP dicarboxylate transporter, DctM subunit
YP_002552437.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_1041 tripartite ATP-independent periplasmic transporter DctQ
YP_002552438.1	KEGG: ajs:Ajs_1042 gamma-glutamyltransferase 1; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_002552439.1	KEGG: aav:Aave_2063 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein
YP_002552440.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: ajs:Ajs_1044 response regulator receiver modulated metal dependent phosphohydrolase
YP_002552441.1	PFAM: inositol monophosphatase; KEGG: ajs:Ajs_1045 inositol-phosphate phosphatase
YP_002552442.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ajs:Ajs_1046 RNA methyltransferase
YP_002552443.1	TIGRFAM: serine O-acetyltransferase; KEGG: ajs:Ajs_1047 serine O-acetyltransferase
YP_002552444.1	PFAM: nitroreductase; KEGG: ajs:Ajs_1048 nitroreductase
YP_002552445.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1049 alcohol dehydrogenase
YP_002552446.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: ajs:Ajs_1050 sulphate transporter
YP_002552447.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase
YP_002552448.1	PFAM: protein of unknown function DUF615; KEGG: ajs:Ajs_1052 hypothetical protein
YP_002552449.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ajs:Ajs_1053 microcin-processing peptidase 1
YP_002552450.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_1054 hypothetical protein
YP_002552451.1	KEGG: ajs:Ajs_1055 hypothetical protein
YP_002552452.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: ajs:Ajs_1056 fumarase
YP_002552453.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_002552454.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1058 CRP/FNR family transcriptional regulator
YP_002552455.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_1059 two component transcriptional regulator
YP_002552456.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1060 integral membrane sensor signal transduction histidine kinase
YP_002552457.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_002552458.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1064 binding-protein-dependent transport systems inner membrane component
YP_002552459.1	KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase
YP_002552460.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1066 hypothetical protein
YP_002552461.1	TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_1067 acetyl-coenzyme A synthetase
YP_002552462.1	KEGG: ajs:Ajs_1068 hypothetical protein
YP_002552463.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_1069 cytochrome c, class I
YP_002552464.1	KEGG: ajs:Ajs_1070 hypothetical protein
YP_002552465.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002552466.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002552467.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1073 hypothetical protein
YP_002552468.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_1074 bacterioferritin
YP_002552469.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002552470.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_1076 GntR family transcriptional regulator
YP_002552471.1	PFAM: Malonyl-CoA decarboxylase; KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase
YP_002552472.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1078 hypothetical protein
YP_002552473.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase
YP_002552474.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_002552475.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_1081 UspA domain-containing protein
YP_002552476.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1082 heavy metal translocating P-type ATPase
YP_002552477.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ajs:Ajs_1083 cytochrome oxidase maturation protein, cbb3-type
YP_002552478.1	CcoN; FixN
YP_002552479.1	CcoO; FixO
YP_002552480.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: ajs:Ajs_1086 Cbb3-type cytochrome oxidase component
YP_002552481.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III
YP_002552482.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ajs:Ajs_1088 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002552483.1	KEGG: ajs:Ajs_1089 hypothetical protein
YP_002552484.1	KEGG: ajs:Ajs_1090 hypothetical protein
YP_002552485.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator
YP_002552486.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002552487.1	KEGG: ajs:Ajs_1093 hypothetical protein
YP_002552488.1	PFAM: protein of unknown function DUF710; KEGG: ajs:Ajs_1094 cell division protein ZapA
YP_002552489.1	KEGG: ajs:Ajs_1095 hypothetical protein
YP_002552490.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_1096 TonB-dependent receptor
YP_002552491.1	PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ajs:Ajs_1097 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
YP_002552492.1	PFAM: cobalbumin biosynthesis protein; KEGG: ajs:Ajs_1098 adenosylcobinamide kinase
YP_002552493.1	PFAM: periplasmic binding protein; KEGG: ajs:Ajs_1099 periplasmic binding protein
YP_002552494.1	PFAM: transport system permease protein; KEGG: ajs:Ajs_1100 transport system permease protein
YP_002552495.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1101 ABC transporter related
YP_002552496.1	KEGG: ajs:Ajs_1102 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_002552497.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: nme:NMB1528 putative methylated-DNA--protein-cysteine methyltransferase
YP_002552498.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4707 transposase IS3/IS911 family protein
YP_002552499.1	PFAM: IS66 Orf2 family protein; KEGG: aav:Aave_0711 IS66 Orf2 family protein
YP_002552500.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_002552501.1	KEGG: reh:H16_B1776 hypothetical protein
YP_002552502.1	KEGG: ajs:Ajs_1105 hypothetical protein
YP_002552503.1	KEGG: ajs:Ajs_1106 hypothetical protein
YP_002552504.1	PFAM: cytochrome B561; KEGG: aav:Aave_3507 cytochrome b561
YP_002552505.1	PFAM: YceI family protein; KEGG: aav:Aave_3506 YceI family protein
YP_002552506.1	PFAM: YceI family protein; KEGG: aav:Aave_3505 YceI family protein
YP_002552507.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_1108 haloacid dehalogenase, type II
YP_002552508.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1109 major facilitator superfamily transporter
YP_002552509.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ajs:Ajs_1111 MarR family transcriptional regulator
YP_002552510.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_002552511.1	TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ajs:Ajs_1113 uracil-xanthine permease
YP_002552512.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ajs:Ajs_1114 peptidase dimerisation domain-containing protein
YP_002552513.1	putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia
YP_002552514.1	KEGG: ajs:Ajs_1117 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase
YP_002552515.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_1118 GntR family transcriptional regulator
YP_002552516.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1119 LysR family transcriptional regulator
YP_002552517.1	KEGG: ajs:Ajs_1120 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_002552518.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1121 hypothetical protein
YP_002552519.1	PFAM: MOFRL domain protein; KEGG: ajs:Ajs_1122 hydroxypyruvate reductase
YP_002552520.1	TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: ajs:Ajs_1123 transthyretin
YP_002552521.1	KEGG: ajs:Ajs_1124 hypothetical protein
YP_002552522.1	TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: ajs:Ajs_1125 hypothetical protein
YP_002552523.1	PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1126 aldehyde dehydrogenase
YP_002552524.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_1127 GntR family transcriptional regulator
YP_002552525.1	PFAM: protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein
YP_002552526.1	Catalyzes the deamination of guanine
YP_002552527.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_002552529.1	PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: ajs:Ajs_1131 protein of unknown function, zinc metallopeptidase putative
YP_002552530.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: ajs:Ajs_1132 DEAD/DEAH box helicase domain-containing protein
YP_002552531.1	KEGG: ajs:Ajs_1133 hypothetical protein
YP_002552532.1	PFAM: NosL family protein; KEGG: ajs:Ajs_1134 NosL family protein
YP_002552533.1	PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_1135 ABC-2 type transporter
YP_002552534.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1136 ABC transporter related
YP_002552535.1	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: ajs:Ajs_1137 periplasmic copper-binding
YP_002552536.1	PFAM: FMN-binding domain protein; KEGG: ajs:Ajs_1138 FMN-binding domain-containing protein
YP_002552537.1	reduces nitrous oxide to nitrogen
YP_002552538.1	KEGG: ajs:Ajs_1140 hypothetical protein
YP_002552539.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_1141 cytochrome c, class I
YP_002552540.1	PFAM: ApbE family lipoprotein; KEGG: ajs:Ajs_1142 ApbE family lipoprotein
YP_002552541.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_002552542.1	PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: ajs:Ajs_1144 histone family protein nucleoid-structuring protein H-NS
YP_002552543.1	Catalyzes the conversion of citrate to isocitrate
YP_002552544.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding
YP_002552545.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1147 major facilitator superfamily transporter
YP_002552546.1	PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: ajs:Ajs_1148 response regulator receiver protein
YP_002552547.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: ajs:Ajs_1150 histidine kinase internal region
YP_002552548.1	KEGG: ajs:Ajs_1151 hypothetical protein
YP_002552549.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002552550.1	KEGG: ajs:Ajs_1153 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; SMART: GGDEF domain containing protein
YP_002552551.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1154 alpha/beta hydrolase fold
YP_002552552.1	PFAM: 20S proteasome A and B subunits; KEGG: ajs:Ajs_1155 20S proteasome, A and B subunits
YP_002552553.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002552554.1	KEGG: ajs:Ajs_1157 alkaline phosphatase
YP_002552555.1	KEGG: ajs:Ajs_1158 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002552556.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1159 alcohol dehydrogenase
YP_002552557.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_002552558.1	KEGG: ajs:Ajs_1161 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_002552559.1	PFAM: Peptidoglycan-binding LysM; Peptidase M23; SMART: Peptidoglycan-binding LysM; KEGG: ajs:Ajs_1162 peptidase M23B
YP_002552560.1	KEGG: ajs:Ajs_1163 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein
YP_002552561.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: ajs:Ajs_1164 condensin subunit ScpB
YP_002552562.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: ajs:Ajs_1165 ribosomal large subunit pseudouridine synthase B
YP_002552563.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002552564.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_1167 radical SAM protein
YP_002552565.1	KEGG: ajs:Ajs_1168 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_002552566.1	KEGG: ajs:Ajs_1169 hypothetical protein
YP_002552567.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002552568.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002552569.1	KEGG: ajs:Ajs_1172 hypothetical protein
YP_002552570.1	TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: ajs:Ajs_1173 pyrrolo-quinoline quinone
YP_002552571.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002552572.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: ajs:Ajs_1175 RNA chaperone Hfq
YP_002552573.1	TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: ajs:Ajs_1176 small GTP-binding protein
YP_002552574.1	KEGG: ajs:Ajs_1177 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein
YP_002552575.1	KEGG: ajs:Ajs_1178 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein
YP_002552576.1	KEGG: ajs:Ajs_1179 hypothetical protein
YP_002552577.1	TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S)
YP_002552578.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002552579.1	PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase
YP_002552580.1	PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A
YP_002552581.1	KEGG: ajs:Ajs_1184 hypothetical protein
YP_002552582.1	PFAM: polysaccharide deacetylase; KEGG: ajs:Ajs_1185 polysaccharide deacetylase
YP_002552583.1	PFAM: fatty acid hydroxylase; KEGG: ajs:Ajs_1186 hypothetical protein
YP_002552584.1	KEGG: ajs:Ajs_1187 putative transmembrane protein
YP_002552585.1	PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein
YP_002552586.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ajs:Ajs_1189 L-glutamine synthetase
YP_002552587.1	KEGG: ajs:Ajs_1190 putative signal peptide protein
YP_002552588.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1191 signal transduction histidine kinase, nitrogen specific, NtrB
YP_002552589.1	KEGG: ajs:Ajs_1192 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase
YP_002552590.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1193 hypothetical protein
YP_002552591.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_1194 exodeoxyribonuclease III Xth
YP_002552592.1	PFAM: dihydrofolate reductase region; KEGG: ajs:Ajs_1195 dihydrofolate reductase
YP_002552593.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002552594.1	PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_1198 FAD linked oxidase domain-containing protein
YP_002552595.1	KEGG: ajs:Ajs_1199 membrane protein-like protein
YP_002552596.1	TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: ajs:Ajs_1200 putative ribonuclease BN
YP_002552597.1	TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: ajs:Ajs_1201 amine oxidase
YP_002552598.1	TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1202 farnesyl-diphosphate farnesyltransferase
YP_002552599.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_1203 metallophosphoesterase
YP_002552600.1	KEGG: ajs:Ajs_1204 monogalactosyldiacylglycerol synthase
YP_002552601.1	TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: ajs:Ajs_1205 squalene/phytoene synthase
YP_002552602.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_1206 RND family efflux transporter MFP subunit
YP_002552603.1	PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein
YP_002552604.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002552605.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002552606.1	binds and unfolds substrates as part of the ClpXP protease
YP_002552607.1	KEGG: ajs:Ajs_1211 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase
YP_002552608.1	PFAM: Heavy metal transport/detoxification protein; KEGG: smt:Smal_1772 heavy metal transport/detoxification protein
YP_002552609.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bpa:BPP3861 [2Fe-2S] ferredoxin
YP_002552610.1	KEGG: ajs:Ajs_1373 MerR family transcriptional regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR
YP_002552611.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bav:BAV0629 copper-transporting P-type ATPase
YP_002552612.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: shw:Sputw3181_1122 regulatory protein, ArsR
YP_002552613.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: aav:Aave_3246 dihydrolipoamide dehydrogenase
YP_002552614.1	KEGG: ajs:Ajs_1328 hypothetical protein
YP_002552615.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1649 cation efflux system protein, AcrB/AcrD/AcrF family protein
YP_002552616.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mpt:Mpe_A1650 hypothetical protein
YP_002552617.1	KEGG: mpt:Mpe_A2672 hypothetical protein
YP_002552618.1	PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1652 hypothetical protein
YP_002552619.1	PFAM: protein of unknown function DUF156; KEGG: ret:RHE_PE00217 hypothetical protein
YP_002552620.1	PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_31240 putative NrbE-like protein
YP_002552621.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shw:Sputw3181_1124 cation diffusion facilitator family transporter
YP_002552622.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: xcv:XCV2337 ArsR family transcriptional regulator
YP_002552623.1	KEGG: net:Neut_0038 hypothetical protein
YP_002552624.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shw:Sputw3181_1126 heavy metal translocating P-type ATPase
YP_002552625.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1129 RND family efflux transporter MFP subunit
YP_002552626.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_1130 hydrophobe/amphiphile efflux-1 (HAE1) family protein
YP_002552627.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shw:Sputw3181_1131 RND efflux system outer membrane lipoprotein
YP_002552628.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: bbr:BB2505 MerR family transcriptional regulator
YP_002552629.1	PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_4451 major facilitator superfamily MFS_1
YP_002552630.1	PFAM: regulatory protein TetR; KEGG: shm:Shewmr7_2884 transcriptional regulator, TetR family
YP_002552631.1	TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ace:Acel_0690 mercuric reductase
YP_002552632.1	KEGG: asa:ASA_0445 hypothetical protein
YP_002552633.1	PFAM: protein of unknown function DUF1486; KEGG: sun:SUN_0926 hypothetical protein
YP_002552634.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: bur:Bcep18194_C6865 GntR family transcriptional regulator
YP_002552635.1	KEGG: bur:Bcep18194_C6852 hypothetical protein
YP_002552636.1	KEGG: xcv:XCV2367 hypothetical protein
YP_002552637.1	KEGG: rme:Rmet_2352 putative secreted protein
YP_002552638.1	KEGG: bpt:Bpet1079 hypothetical protein
YP_002552639.1	KEGG: xcv:XCV2370 putative secreted protein
YP_002552640.1	KEGG: ajs:Ajs_1402 putative secreted protein
YP_002552641.1	KEGG: bpt:Bpet1076 hypothetical protein
YP_002552642.1	KEGG: bpt:Bpet1488 hypothetical protein
YP_002552643.1	KEGG: rme:Rmet_2346 hypothetical protein
YP_002552644.1	PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: har:HEAR2012 putative signal peptide
YP_002552645.1	KEGG: kpe:KPK_1762 hypothetical protein
YP_002552646.1	KEGG: bpt:Bpet1484 hypothetical protein
YP_002552647.1	KEGG: xcv:XCV2377 hypothetical protein
YP_002552648.1	KEGG: xcv:XCV2378 putative secreted protein
YP_002552649.1	PFAM: Lytic transglycosylase catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor
YP_002552650.1	KEGG: ajs:Ajs_1411 putative secreted protein
YP_002552651.1	KEGG: ajs:Ajs_1412 putative secreted protein
YP_002552652.1	KEGG: xcv:XCV2382 putative secreted protein
YP_002552653.1	KEGG: bpt:Bpet1477 hypothetical protein
YP_002552654.1	KEGG: xcv:XCV2416 hypothetical protein
YP_002552655.1	KEGG: ajs:Ajs_2624 hypothetical protein
YP_002552656.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002552657.1	KEGG: ajs:Ajs_2622 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002552658.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: ajs:Ajs_2621 histone family protein DNA-binding protein
YP_002552659.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_2620 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002552661.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_002552662.1	PFAM: IS66 Orf2 family protein; KEGG: aav:Aave_0711 IS66 Orf2 family protein
YP_002552663.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4707 transposase IS3/IS911 family protein
YP_002552664.1	PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: ajs:Ajs_2618 EcoEI R domain-containing protein
YP_002552666.1	PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A
YP_002552667.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein
YP_002552668.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_002552669.1	KEGG: ajs:Ajs_2607 hypothetical protein
YP_002552670.1	KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein
YP_002552671.1	PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA
YP_002552672.1	KEGG: ajs:Ajs_2603 hypothetical protein
YP_002552673.1	PFAM: protein of unknown function DUF411; KEGG: ajs:Ajs_2602 hypothetical protein
YP_002552674.1	PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein
YP_002552675.1	PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_2600 multicopper oxidase, type 3
YP_002552676.1	KEGG: ajs:Ajs_2599 copper tolerance protein
YP_002552677.1	KEGG: ajs:Ajs_2598 hypothetical protein
YP_002552678.1	KEGG: ajs:Ajs_2597 hypothetical protein
YP_002552679.1	PFAM: protein of unknown function DUF161; KEGG: ajs:Ajs_2596 hypothetical protein
YP_002552680.1	KEGG: ajs:Ajs_2595 hypothetical protein
YP_002552681.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase
YP_002552682.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: ajs:Ajs_2593 MerR family transcriptional regulator
YP_002552683.1	PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_2592 ABC-type transport system ipermease component
YP_002552684.1	PFAM: Mammalian cell entry related domain protein; KEGG: ajs:Ajs_2591 hypothetical protein
YP_002552685.1	KEGG: ajs:Ajs_2590 hypothetical protein
YP_002552686.1	KEGG: ajs:Ajs_2589 hypothetical protein
YP_002552687.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: ajs:Ajs_2588 carbohydrate kinase, YjeF related protein
YP_002552688.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase
YP_002552689.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002552690.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002552691.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002552692.1	Catalyzes the phosphorylation of UMP to UDP
YP_002552693.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002552694.1	KEGG: ajs:Ajs_2581 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_002552695.1	PFAM: phosphatidate cytidylyltransferase; KEGG: ajs:Ajs_2580 phosphatidate cytidylyltransferase
YP_002552696.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002552697.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: ajs:Ajs_2578 peptidase RseP
YP_002552698.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ajs:Ajs_2577 surface antigen (D15)
YP_002552699.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH)
YP_002552700.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_002552701.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002552702.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_002552703.1	KEGG: ajs:Ajs_2572 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_002552704.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002552705.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ajs:Ajs_2570 tRNA/rRNA methyltransferase (SpoU)
YP_002552706.1	KEGG: ajs:Ajs_2569 hypothetical protein
YP_002552707.1	KEGG: ajs:Ajs_2568 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: RNA binding S1 domain protein; Cold shock protein
YP_002552708.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2567 short-chain dehydrogenase/reductase SDR
YP_002552709.1	KEGG: ajs:Ajs_2566 putative cytochrome c
YP_002552710.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_2565 cytochrome c, class I
YP_002552711.1	KEGG: ajs:Ajs_2564 hypothetical protein
YP_002552712.1	PFAM: protein of unknown function DUF150; KEGG: ajs:Ajs_2563 hypothetical protein
YP_002552713.1	KEGG: ajs:Ajs_2562 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; SMART: RNA binding S1 domain protein; KH domain protein
YP_002552714.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002552715.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002552716.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002552717.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: ajs:Ajs_2558 GTP-binding protein TypA
YP_002552718.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2557 hypothetical protein
YP_002552719.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_002552720.1	KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor
YP_002552721.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2554 ECF subfamily RNA polymerase sigma-24 factor
YP_002552722.1	PFAM: Secreted repeat of unknown function; KEGG: ajs:Ajs_2553 hypothetical protein
YP_002552723.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002552724.1	PFAM: cyclase/dehydrase; KEGG: ajs:Ajs_2551 cyclase/dehydrase
YP_002552725.1	PFAM: protein of unknown function UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein
YP_002552726.1	KEGG: ajs:Ajs_2549 hypothetical protein
YP_002552727.1	KEGG: ajs:Ajs_2548 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase NPD; SMART: CBS domain containing protein
YP_002552728.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002552729.1	PFAM: integrase family protein; KEGG: bam:Bamb_2021 phage integrase family protein
YP_002552730.1	KEGG: rme:Rmet_1466 hypothetical protein
YP_002552731.1	PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_1467 prophage CP4-57 regulatory
YP_002552732.1	PFAM: Prophage CP4-57 regulatory; KEGG: pmy:Pmen_3481 phage transcriptional regulator, AlpA
YP_002552733.1	PFAM: Domain of unknown function DUF1863; KEGG: ajs:Ajs_2628 hypothetical protein
YP_002552734.1	KEGG: ajs:Ajs_2629 hypothetical protein
YP_002552735.1	KEGG: ajs:Ajs_2630 hypothetical protein
YP_002552736.1	KEGG: ajs:Ajs_2631 hypothetical protein
YP_002552737.1	PFAM: Domain of unknown function DUF1863; KEGG: ajs:Ajs_2632 hypothetical protein
YP_002552738.1	KEGG: pca:Pcar_2915 hypothetical protein
YP_002552739.1	KEGG: ajs:Ajs_2635 hypothetical protein
YP_002552740.1	TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein
YP_002552741.1	KEGG: bpt:Bpet2173 putative transposon
YP_002552742.1	KEGG: xac:XAC2264 hypothetical protein
YP_002552743.1	PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1244 protein of unknown function DUF932
YP_002552744.1	PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: bpt:Bpet2176 ParB-like nuclease
YP_002552745.1	KEGG: dac:Daci_2732 hypothetical protein
YP_002552746.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rfr:Rfer_0383 glyoxalase
YP_002552747.1	KEGG: rso:RSc2612 hypothetical protein
YP_002552748.1	KEGG: rso:RSc2611 hypothetical protein
YP_002552749.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rso:RSc2610 putative transcription regulator protein
YP_002552750.1	KEGG: ajs:Ajs_2650 putative lipoprotein
YP_002552751.1	KEGG: ajs:Ajs_2651 hypothetical protein
YP_002552752.1	KEGG: rme:Rmet_1253 hypothetical protein
YP_002552753.1	KEGG: rme:Rmet_1485 conserved hypothetical replication initiator and transcription repressor protein
YP_002552754.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase
YP_002552755.1	KEGG: rme:Rmet_1256 hypothetical protein
YP_002552756.1	KEGG: bmj:BMULJ_00908 hypothetical protein
YP_002552757.1	KEGG: rme:Rmet_1258 TraF peptidase. Serine peptidase. MEROPS family S26C
YP_002552758.1	KEGG: pap:PSPA7_3726 hypothetical protein
YP_002552759.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pla:Plav_3459 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
YP_002552760.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: pla:Plav_3453 acetate kinase
YP_002552761.1	KEGG: rme:Rmet_1260 hypothetical protein
YP_002552762.1	KEGG: rme:Rmet_1261 hypothetical protein
YP_002552763.1	PFAM: conserved hypothetical protein; KEGG: rme:Rmet_1265 conserved hypothetical protein 730
YP_002552764.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rme:Rmet_1266 beta-lactamase-like protein
YP_002552765.1	KEGG: dsh:Dshi_2965 hypothetical protein
YP_002552766.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_1267 RND efflux system, outer membrane lipoprotein, NodT
YP_002552767.1	PFAM: ABC-2 type transporter; KEGG: rme:Rmet_1268 ABC-type multidrug transport system permease component
YP_002552768.1	PFAM: ABC-2 type transporter; KEGG: rme:Rmet_1269 ABC-type multidrug transport system permease component
YP_002552769.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oca:OCAR_4859 ATPase component ABC-type multidrug transport system
YP_002552770.1	PFAM: secretion protein HlyD family protein; KEGG: oca:OCAR_4860 secretion protein HlyD family protein
YP_002552771.1	KEGG: pde:Pden_3298 hypothetical protein
YP_002552772.1	PFAM: regulatory protein TetR; KEGG: oca:OCAR_4861 transcriptional regulator of TetR family protein
YP_002552773.1	PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: oca:OCAR_4862 poly-beta-hydroxybutyrate polymerase
YP_002552774.1	KEGG: rme:Rmet_1332 hypothetical protein
YP_002552775.1	TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase
YP_002552776.1	PFAM: UspA domain protein; KEGG: rme:Rmet_1334 UspA
YP_002552777.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: dac:Daci_0755 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
YP_002552778.1	KEGG: pla:Plav_3441 hypothetical protein
YP_002552779.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2703 LysR family transcriptional regulator
YP_002552780.1	KEGG: dac:Daci_0441 hypothetical protein
YP_002552781.1	PFAM: TRAG family protein; KEGG: bpt:Bpet2204 conjugal transfer protein TraG
YP_002552782.1	PFAM: Conjugal transfer protein TrbC; KEGG: shn:Shewana3_1283 conjugal transfer protein TrbC
YP_002552783.1	KEGG: dac:Daci_0436 putative conjugal transfer TrbD transmembrane protein
YP_002552784.1	type IV secretion system VirB4 family
YP_002552785.1	TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: rme:Rmet_1345 putative conjugal transfer TrbJ signal peptide protein
YP_002552786.1	KEGG: pap:PSPA7_3701 putative lipoprotein
YP_002552787.1	type IV secretion VirB6 family
YP_002552788.1	PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1348 conjugal transfer protein
YP_002552789.1	TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bmj:BMULJ_00883 type IV secretion system protein
YP_002552790.1	PFAM: conjugation TrbI family protein; KEGG: rpi:Rpic_2653 conjugation TrbI family protein
YP_002552791.1	KEGG: aav:Aave_0736 hypothetical protein
YP_002552792.1	KEGG: dar:Daro_1737 hypothetical protein
YP_002552793.1	PFAM: Domain of unknown function DUF1814; KEGG: mpo:Mpop_3057 protein of unknown function DUF1814
YP_002552794.1	KEGG: pla:Plav_3511 hypothetical protein
YP_002552795.1	KEGG: bbr:BB2494 phage-like hypothetical protein
YP_002552796.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: bbr:BB2493 putative phage-related DNA-binding protein
YP_002552797.1	PFAM: stem cell self-renewal protein Piwi domain protein; KEGG: pth:PTH_0723 hypothetical protein
YP_002552798.1	KEGG: sfu:Sfum_2482 hypothetical protein
YP_002552799.1	KEGG: aav:Aave_1218 putative transmembrane protein
YP_002552800.1	KEGG: ajs:Ajs_2524 Ku domain-containing protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002552801.1	PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3918 transposase, IS4 family protein
YP_002552802.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR
YP_002552803.1	KEGG: ajs:Ajs_2521 glutamate-cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase
YP_002552804.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ajs:Ajs_2520 acetolactate synthase 2 catalytic subunit
YP_002552805.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2519 LysR family transcriptional regulator
YP_002552806.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2518 major facilitator superfamily transporter
YP_002552807.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: ajs:Ajs_2517 arsenical-resistance protein
YP_002552808.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: ajs:Ajs_2516 protein tyrosine phosphatase
YP_002552809.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_2515 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002552810.1	SMART: regulatory protein ArsR; KEGG: ajs:Ajs_2514 ArsR family transcriptional regulator
YP_002552811.1	KEGG: ajs:Ajs_2513 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase
YP_002552812.1	KEGG: ajs:Ajs_2512 hypothetical protein
YP_002552813.1	KEGG: ajs:Ajs_2511 hypothetical protein
YP_002552814.1	TIGRFAM: GTP-binding protein HSR1-related; PFAM: GTP-binding protein HSR1-related; KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related
YP_002552815.1	PFAM: OsmC family protein; KEGG: ajs:Ajs_2509 OsmC family protein
YP_002552816.1	KEGG: ajs:Ajs_2508 hypothetical protein
YP_002552817.1	KEGG: ajs:Ajs_2507 hypothetical protein
YP_002552818.1	PFAM: MgtC/SapB transporter; KEGG: ajs:Ajs_2506 MgtC/SapB transporter
YP_002552819.1	PFAM: pseudouridine synthase; KEGG: ajs:Ajs_2505 tRNA pseudouridine synthase C
YP_002552820.1	KEGG: ajs:Ajs_2504 hypothetical protein
YP_002552821.1	KEGG: ajs:Ajs_2503 hypothetical protein
YP_002552822.1	PFAM: phosphoesterase DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1
YP_002552823.1	PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: ajs:Ajs_2501 nuclease
YP_002552824.1	TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: ajs:Ajs_2500 transporter DMT superfamily protein
YP_002552825.1	KEGG: ajs:Ajs_2499 hypothetical protein
YP_002552826.1	PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: ajs:Ajs_2498 Sel1 domain-containing protein
YP_002552827.1	PFAM: pseudouridine synthase; KEGG: ajs:Ajs_2497 ribosomal large subunit pseudouridine synthase E
YP_002552828.1	PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B
YP_002552829.1	PFAM: fumarate lyase; delta crystallin domain protein; KEGG: har:HEAR0768 aspartate ammonia-lyase (aspartase)
YP_002552830.1	TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: ajs:Ajs_2494 phasin family protein
YP_002552831.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2493 thioesterase superfamily protein
YP_002552832.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_002552833.1	KEGG: ajs:Ajs_2491 putative transmembrane protein
YP_002552834.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_2490 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002552835.1	PFAM: protein of unknown function DUF195; KEGG: ajs:Ajs_2489 hypothetical protein
YP_002552836.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily transporter
YP_002552837.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2487 hypothetical protein
YP_002552838.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002552839.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_2485 TRAP dicarboxylate transporter, DctM subunit
YP_002552840.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_2484 tripartite ATP-independent periplasmic transporter DctQ
YP_002552841.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_2483 TRAP dicarboxylate transporter-DctP subunit
YP_002552842.1	KEGG: ajs:Ajs_2482 putative transcriptional regulator
YP_002552843.1	KEGG: ajs:Ajs_2481 hypothetical protein
YP_002552844.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ajs:Ajs_2480 5-oxoprolinase (ATP-hydrolyzing)
YP_002552845.1	PFAM: Na+/H+ antiporter subunit; KEGG: ajs:Ajs_2479 Na+/H+ antiporter subunit
YP_002552846.1	PFAM: multiple resistance and pH regulation protein F; KEGG: ajs:Ajs_2478 multiple resistance and pH regulation protein F
YP_002552847.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_002552848.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_002552849.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_002552850.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_002552851.1	KEGG: ajs:Ajs_2473 hypothetical protein
YP_002552852.1	PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ajs:Ajs_2472 hypothetical protein
YP_002552853.1	KEGG: ajs:Ajs_2471 hypothetical protein
YP_002552854.1	KEGG: ajs:Ajs_2470 integration host factor, beta subunit; TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_002552855.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002552856.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation
YP_002552857.1	PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_2467 prephenate dehydrogenase
YP_002552858.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_2466 chorismate mutase / prephenate dehydratase
YP_002552859.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_002552860.1	negatively supercoils closed circular double-stranded DNA
YP_002552861.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2463 OmpA/MotB domain-containing protein
YP_002552862.1	Involved in ubiquinone biosynthesis
YP_002552863.1	TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase
YP_002552864.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_002552865.1	PFAM: IS66 Orf2 family protein; KEGG: aav:Aave_0711 IS66 Orf2 family protein
YP_002552866.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4707 transposase IS3/IS911 family protein
YP_002552867.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2441 TetR family transcriptional regulator
YP_002552868.1	PFAM: Negative transcriptional regulator; KEGG: ajs:Ajs_2440 negative transcriptional regulator
YP_002552869.1	KEGG: ajs:Ajs_2439 hypothetical protein
YP_002552870.1	PFAM: protein of unknown function DUF599; KEGG: ajs:Ajs_2438 hypothetical protein
YP_002552871.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_2437 protein of unknown function DUF395, YeeE/YedE
YP_002552872.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_2436 protein of unknown function DUF395, YeeE/YedE
YP_002552873.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ajs:Ajs_2435 ArsR family transcriptional regulator
YP_002552874.1	PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_2434 beta-lactamase domain-containing protein
YP_002552875.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_2433 redoxin domain-containing protein
YP_002552876.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_2432 integral membrane sensor signal transduction histidine kinase
YP_002552877.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_2431 two component transcriptional regulator
YP_002552878.1	PFAM: VRR-NUC domain protein; KEGG: ajs:Ajs_2429 hypothetical protein
YP_002552879.1	SMART: helicase c2; KEGG: ajs:Ajs_2428 helicase C2
YP_002552880.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: fgenesh4_pg.C_scaffold_19680000001.
YP_002552881.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2993 phosphonate uptake transporter
YP_002552882.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rme:Rmet_2994 phosphonate-binding periplasmic protein
YP_002552883.1	KEGG: rme:Rmet_2995 phosphonate ABC transporter PhnC, ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002552884.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2677 LysR family transcriptional regulator
YP_002552885.1	PFAM: molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_2424 molydopterin dinucleotide-binding region
YP_002552886.1	PFAM: Polysulphide reductase NrfD; KEGG: ajs:Ajs_2423 polysulphide reductase, NrfD
YP_002552887.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_2422 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002552888.1	KEGG: ajs:Ajs_2421 2',5' RNA ligase
YP_002552889.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: ajs:Ajs_2420 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
YP_002552890.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_2419 AsnC family transcriptional regulator
YP_002552891.1	KEGG: ajs:Ajs_2418 hypothetical protein
YP_002552892.1	KEGG: ajs:Ajs_2417 hypothetical protein
YP_002552893.1	KEGG: ajs:Ajs_2416 hypothetical protein
YP_002552894.1	KEGG: rfr:Rfer_4147 putative transmembrane transcriptional regulator (anti-sigma factor)
YP_002552895.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2415 ECF subfamily RNA polymerase sigma-24 factor
YP_002552896.1	KEGG: ajs:Ajs_2414 hypothetical protein
YP_002552897.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_002552898.1	KEGG: ajs:Ajs_2412 hypothetical protein
YP_002552899.1	PFAM: protein of unknown function UPF0005; KEGG: ajs:Ajs_2411 hypothetical protein
YP_002552900.1	PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 hypothetical protein
YP_002552901.1	KEGG: ajs:Ajs_2409 hypothetical protein
YP_002552902.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR
YP_002552903.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2407 MotA/TolQ/ExbB proton channel
YP_002552904.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein
YP_002552905.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2405 BFD/(2Fe-2S)-binding domain-containing protein
YP_002552906.1	PFAM: SWIB/MDM2 domain protein; SMART: SWIB/MDM2 domain protein; KEGG: ajs:Ajs_2404 SWIB/MDM2 domain-containing protein
YP_002552907.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_002552908.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 hypothetical protein
YP_002552909.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: ajs:Ajs_2401 isocitrate lyase
YP_002552910.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002552911.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ajs:Ajs_2399 translation initiation factor 3
YP_002552912.1	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: ajs:Ajs_2398 50S ribosomal protein L35P
YP_002552913.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002552914.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002552915.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002552916.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_002552917.1	PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ajs:Ajs_2393 MerR family transcriptional regulator
YP_002552918.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: ajs:Ajs_2392 carbamoyl-phosphate synthase small subunit
YP_002552919.1	KEGG: ajs:Ajs_2391 hypothetical protein
YP_002552920.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: ajs:Ajs_2390 carbamoyl-phosphate synthase large subunit
YP_002552921.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_002552922.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: azo:azo0267 putative membrane fusion protein
YP_002552923.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2801 heavy metal efflux pump CzcA
YP_002552924.1	KEGG: azo:azo0269 hypothetical protein
YP_002552925.1	KEGG: dar:Daro_2803 outer membrane efflux protein
YP_002552926.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1952 integral membrane sensor signal transduction histidine kinase
YP_002552927.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_1953 two component transcriptional regulator
YP_002552928.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL
YP_002552929.1	PFAM: SNARE associated Golgi protein; KEGG: ajs:Ajs_0980 DedA protein (DSG-1 protein)
YP_002552930.1	PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1169 17 kDa surface antigen
YP_002552931.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_2389 transcription elongation factor GreA
YP_002552932.1	KEGG: ajs:Ajs_2388 hypothetical protein
YP_002552933.1	KEGG: ajs:Ajs_2387 hypothetical protein
YP_002552934.1	KEGG: ajs:Ajs_2386 hypothetical protein
YP_002552935.1	PFAM: protein of unknown function UPF0044; KEGG: ajs:Ajs_2385 hypothetical protein
YP_002552936.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_2384 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_002552937.1	KEGG: ajs:Ajs_2383 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002552938.1	KEGG: ajs:Ajs_2382 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_002552939.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002552940.1	KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein; EAL domain protein
YP_002552941.1	KEGG: ajs:Ajs_2379 ornithine-acyl[acyl carrier protein] N-acyltransferase
YP_002552942.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_002552943.1	PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA
YP_002552944.1	PFAM: Ppx/GppA phosphatase; KEGG: ajs:Ajs_2375 Ppx/GppA phosphatase
YP_002552945.1	KEGG: ajs:Ajs_2374 twin-arginine translocation pathway signal
YP_002552946.1	PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: ajs:Ajs_2373 beta-Ig-H3/fasciclin
YP_002552947.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_2372 phosphate ABC transporter, periplasmic phosphate-binding protein
YP_002552948.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2371 phosphate ABC transporter, inner membrane subunit PstC
YP_002552949.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_002552950.1	KEGG: ajs:Ajs_2369 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002552951.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU
YP_002552952.1	KEGG: ajs:Ajs_2367 two component transcriptional regulator; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver
YP_002552953.1	KEGG: ajs:Ajs_2366 multi-sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002552954.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ajs:Ajs_2365 MATE efflux family protein
YP_002552955.1	KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein
YP_002552956.1	TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ajs:Ajs_2363 50S ribosomal protein L31P
YP_002552957.1	PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_2362 ABC-2 type transporter
YP_002552958.1	PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related
YP_002552959.1	PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_2360 secretion protein HlyD family protein
YP_002552960.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2359 RND efflux system outer membrane lipoprotein
YP_002552961.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002552962.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ajs:Ajs_2357 thioredoxin
YP_002552963.1	KEGG: ajs:Ajs_2356 exonuclease-like protein
YP_002552964.1	PFAM: UvrD/REP helicase; KEGG: ajs:Ajs_2355 UvrD/REP helicase
YP_002552965.1	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11
YP_002552966.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: ajs:Ajs_2353 hypothetical protein
YP_002552967.1	KEGG: ajs:Ajs_2352 hypothetical protein
YP_002552968.1	KEGG: ajs:Ajs_2350 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_002552969.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2349 hypothetical protein
YP_002552970.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002552971.1	KEGG: ajs:Ajs_2347 membrane protein-like protein
YP_002552972.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2346 major facilitator superfamily transporter
YP_002552973.1	part of the metNIQ transport system for methionine
YP_002552974.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2344 binding-protein-dependent transport systems inner membrane component
YP_002552975.1	KEGG: ajs:Ajs_2343 hypothetical protein
YP_002552976.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 YaeC family lipoprotein
YP_002552977.1	PFAM: NADPH-dependent FMN reductase; KEGG: ajs:Ajs_2341 NADPH-dependent FMN reductase
YP_002552978.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ajs:Ajs_2340 (acyl-carrier-protein) phosphodiesterase
YP_002552979.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2339 LysR family transcriptional regulator
YP_002552980.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_2338 sulfate ABC transporter, periplasmic sulfate-binding protein
YP_002552981.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2337 sulfate ABC transporter, inner membrane subunit CysT
YP_002552982.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2336 sulfate ABC transporter, inner membrane subunit CysW
YP_002552983.1	KEGG: ajs:Ajs_2335 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002552984.1	PFAM: Disulphide bond formation protein DsbB; KEGG: ajs:Ajs_2334 disulphide bond formation protein DsbB
YP_002552985.1	PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: ajs:Ajs_2333 glutaredoxin
YP_002552986.1	PFAM: PepSY-associated TM helix domain protein; KEGG: ajs:Ajs_2332 PepSY-associated TM helix domain-containing protein
YP_002552987.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vei:Veis_4740 TonB-dependent siderophore receptor
YP_002552988.1	KEGG: ajs:Ajs_2330 hypothetical protein
YP_002552989.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2329 LysR family transcriptional regulator
YP_002552990.1	PFAM: beta-lactamase; KEGG: ajs:Ajs_2328 beta-lactamase
YP_002552991.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_002552992.1	PFAM: acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3
YP_002552993.1	PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_1845 transposase IS3/IS911 family protein
YP_002552994.1	PFAM: Integrase catalytic region; KEGG: ajs:Ajs_1844 integrase catalytic subunit
YP_002552995.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2325 hypothetical protein
YP_002552996.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11
YP_002552997.1	SMART: Ankyrin; KEGG: ajs:Ajs_2323 hypothetical protein
YP_002552998.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2322 major facilitator superfamily transporter
YP_002552999.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2321 ABC transporter related
YP_002553000.1	PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein
YP_002553001.1	PFAM: BioY protein; KEGG: ajs:Ajs_2319 BioY protein
YP_002553002.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2318 AMP-dependent synthetase and ligase
YP_002553003.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases
YP_002553004.1	PFAM: nitroreductase; KEGG: ajs:Ajs_2316 nitroreductase
YP_002553005.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_2315 metallophosphoesterase
YP_002553006.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; SAF domain protein; KEGG: ajs:Ajs_2314 SAF domain-containing protein
YP_002553007.1	KEGG: ajs:Ajs_2313 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: helicase domain protein; AAA ATPase; DEAD-like helicases
YP_002553008.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ajs:Ajs_2312 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_002553009.1	KEGG: ajs:Ajs_2311 hypothetical protein
YP_002553010.1	Represses a number of genes involved in the response to DNA damage
YP_002553011.1	PFAM: Asparaginase/glutaminase; KEGG: ajs:Ajs_2309 asparaginase
YP_002553012.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002553013.1	KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_002553014.1	PFAM: protein of unknown function DUF343; KEGG: ajs:Ajs_2306 hypothetical protein
YP_002553015.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_002553016.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2304 biopolymer transport protein ExbD/TolR
YP_002553017.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2303 MotA/TolQ/ExbB proton channel
YP_002553018.1	KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type
YP_002553019.1	PFAM: manganese and iron superoxide dismutase; KEGG: ajs:Ajs_2301 superoxide dismutase
YP_002553020.1	KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type
YP_002553021.1	PFAM: protein of unknown function DUF192; KEGG: ajs:Ajs_2299 hypothetical protein
YP_002553022.1	KEGG: ajs:Ajs_2298 hypothetical protein
YP_002553023.1	Converts isocitrate to alpha ketoglutarate
YP_002553025.1	PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV2250 transcriptional regulator
YP_002553027.1	KEGG: tbd:Tbd_1821 putative type IV secretory pathway VirD4 component
YP_002553030.1	TIGRFAM: conjugative relaxase domain protein; PFAM: TrwC relaxase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit
YP_002553031.1	KEGG: tbd:Tbd_1817 hypothetical protein
YP_002553033.1	KEGG: rme:Rmet_4602 transcriptional regulators, TraR/DksA family
YP_002553034.1	PFAM: UspA domain protein; KEGG: rme:Rmet_4601 UspA
YP_002553036.1	PFAM: integrase family protein; KEGG: nmu:Nmul_A2184 phage integrase
YP_002553037.1	PFAM: protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein
YP_002553038.1	KEGG: ajs:Ajs_2295 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_002553039.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_002553040.1	KEGG: ajs:Ajs_2293 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24
YP_002553041.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002553042.1	KEGG: ajs:Ajs_2291 hypothetical protein
YP_002553043.1	PFAM: protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein
YP_002553044.1	PFAM: OmpW family protein; OmpF family protein; KEGG: ajs:Ajs_2289 OmpW family protein
YP_002553045.1	TIGRFAM: methyltransferase; PFAM: methyltransferase; KEGG: ajs:Ajs_2288 hypothetical protein
YP_002553046.1	PFAM: protein of unknown function DUF323; KEGG: ajs:Ajs_2287 hypothetical protein
YP_002553047.1	KEGG: ajs:Ajs_2286 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_002553048.1	PFAM: peptidase U32; KEGG: ajs:Ajs_2285 peptidase U32
YP_002553049.1	TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: ajs:Ajs_2284 sodium/glutamate symporter
YP_002553050.1	KEGG: ajs:Ajs_2283 hypothetical protein
YP_002553051.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding
YP_002553052.1	PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: ajs:Ajs_2281 muramoyltetrapeptide carboxypeptidase
YP_002553053.1	PFAM: peptidase S45 penicillin amidase; KEGG: dac:Daci_4805 peptidase S45 penicillin amidase
YP_002553054.1	PFAM: OsmC family protein; KEGG: ajs:Ajs_2279 OsmC family protein
YP_002553055.1	PFAM: Pirin domain protein; KEGG: ajs:Ajs_2278 pirin domain-containing protein
YP_002553056.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_2277 cobyrinic acid a,c-diamide synthase
YP_002553057.1	KEGG: ajs:Ajs_2276 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002553058.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ajs:Ajs_2275 sulphate transporter
YP_002553059.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ajs:Ajs_2274 transport-associated
YP_002553060.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ajs:Ajs_2273 cystathionine beta-lyase
YP_002553061.1	KEGG: ajs:Ajs_2272 integral membrane protein
YP_002553062.1	PFAM: lipolytic protein G-D-S-L family; KEGG: ajs:Ajs_2271 GDSL family lipase
YP_002553063.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2270 ABC transporter related
YP_002553064.1	involved in the import of serine and threonine coupled with the import of sodium
YP_002553065.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ajs:Ajs_2268 RNA methyltransferase
YP_002553066.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase
YP_002553067.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ajs:Ajs_2266 activator of HSP90 ATPase 1 family protein
YP_002553068.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase
YP_002553069.1	PFAM: protein of unknown function DUF1428; KEGG: ajs:Ajs_2264 hypothetical protein
YP_002553070.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2263 TetR family transcriptional regulator
YP_002553071.1	PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_2262 silent information regulator protein Sir2
YP_002553072.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: ajs:Ajs_2261 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_002553073.1	PFAM: Chromate transporter; KEGG: ajs:Ajs_2260 chromate transporter
YP_002553074.1	PFAM: Chromate transporter; KEGG: ajs:Ajs_2259 chromate transporter
YP_002553075.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_2258 5-carboxymethyl-2-hydroxymuconate delta-isomerase
YP_002553076.1	PFAM: small multidrug resistance protein; KEGG: ajs:Ajs_2257 small multidrug resistance protein
YP_002553077.1	PFAM: Ankyrin; KEGG: ajs:Ajs_2256 ankyrin
YP_002553078.1	PFAM: protein of unknown function DUF897; KEGG: ajs:Ajs_2255 hypothetical protein
YP_002553079.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2254 LysR family transcriptional regulator
YP_002553080.1	TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: ajs:Ajs_2253 HipA domain-containing protein
YP_002553081.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_2252 XRE family transcriptional regulator
YP_002553082.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2251 LysR family transcriptional regulator
YP_002553083.1	catalyzes the formation of pyruvate from serine
YP_002553084.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2249 hypothetical protein
YP_002553085.1	PFAM: Amidase; KEGG: ajs:Ajs_2248 amidase
YP_002553086.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2247 FAD dependent oxidoreductase
YP_002553087.1	KEGG: ajs:Ajs_2246 hypothetical protein
YP_002553088.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002553089.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ajs:Ajs_2244 hypothetical protein
YP_002553090.1	PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ajs:Ajs_2243 radical SAM domain-containing protein
YP_002553091.1	KEGG: ajs:Ajs_2242 hypothetical protein
YP_002553092.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: rfr:Rfer_2339 extradiol ring-cleavage dioxygenase III subunit B
YP_002553093.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_002553094.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002553095.1	TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_2145 BadM/Rrf2 family transcriptional regulator
YP_002553096.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ajs:Ajs_2144 cysteine desulfurase IscS
YP_002553097.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: ajs:Ajs_2143 FeS cluster assembly scaffold IscU
YP_002553098.1	TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: ajs:Ajs_2142 iron-sulfur cluster assembly protein IscA
YP_002553099.1	KEGG: ajs:Ajs_2141 co-chaperone Hsc20; TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; SMART: heat shock protein DnaJ domain protein
YP_002553100.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_002553101.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: ajs:Ajs_2139 ferredoxin, 2Fe-2S type, ISC system
YP_002553102.1	KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_002553103.1	PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2137 histone deacetylase superfamily protein
YP_002553104.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase
YP_002553105.1	PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB
YP_002553106.1	KEGG: ajs:Ajs_2134 hypothetical protein
YP_002553107.1	KEGG: ajs:Ajs_2133 hypothetical protein
YP_002553108.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_002553109.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002553110.1	PFAM: glutaredoxin; KEGG: ajs:Ajs_2130 glutaredoxin
YP_002553111.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: ajs:Ajs_2129 oligopeptidase A
YP_002553112.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002553113.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_2127 two component LuxR family transcriptional regulator
YP_002553114.1	KEGG: ajs:Ajs_2126 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002553115.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_002553116.1	KEGG: ajs:Ajs_2124 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_002553117.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ajs:Ajs_2123 dihydrolipoamide dehydrogenase
YP_002553118.1	KEGG: ajs:Ajs_2095 hypothetical protein
YP_002553119.1	PFAM: Protein of unknown function methylase putative; KEGG: ajs:Ajs_2094 hypothetical protein
YP_002553120.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding
YP_002553121.1	PFAM: protein of unknown function DUF55; KEGG: ajs:Ajs_2092 hypothetical protein
YP_002553122.1	PFAM: NLP/P60 protein; KEGG: ajs:Ajs_2091 NLP/P60 protein
YP_002553123.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2090 major facilitator superfamily transporter
YP_002553124.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2089 ABC transporter related
YP_002553125.1	KEGG: ajs:Ajs_2088 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein; EAL domain protein
YP_002553126.1	PFAM: protein of unknown function UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein
YP_002553127.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: ajs:Ajs_2086 chromosome segregation protein SMC
YP_002553128.1	SMART: ZipA FtsZ-binding region; KEGG: ajs:Ajs_2085 ZipA, C-terminal FtsZ-binding region
YP_002553129.1	KEGG: ajs:Ajs_2084 hypothetical protein
YP_002553130.1	KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase
YP_002553131.1	PFAM: Patatin; KEGG: ajs:Ajs_2082 patatin
YP_002553132.1	PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ajs:Ajs_2081 glycosyl transferase family protein
YP_002553133.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2080 major facilitator superfamily transporter
YP_002553134.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_2079 NUDIX hydrolase
YP_002553135.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_2078 fumarylacetoacetate (FAA) hydrolase
YP_002553136.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_2077 maleylacetoacetate isomerase
YP_002553137.1	PFAM: protein of unknown function DUF152; KEGG: ajs:Ajs_2076 hypothetical protein
YP_002553138.1	KEGG: ajs:Ajs_2075 hypothetical protein
YP_002553139.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: ajs:Ajs_2074 poly(R)-hydroxyalkanoic acid synthase, class I
YP_002553140.1	KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002553141.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_1833 TetR family transcriptional regulator
YP_002553142.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_1834 RND family efflux transporter MFP subunit
YP_002553143.1	PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_1835 hypothetical protein
YP_002553144.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1836 ABC transporter related
YP_002553145.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ajs:Ajs_1837 lytic murein transglycosylase
YP_002553146.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_002553147.1	PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2
YP_002553148.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_1840 fis family GAF modulated sigma54 specific transcriptional regulator
YP_002553149.1	PFAM: protein of unknown function DUF779; KEGG: ajs:Ajs_1888 hypothetical protein
YP_002553150.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_1889 alcohol dehydrogenase
YP_002553151.1	PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1890 aldehyde dehydrogenase
YP_002553152.1	PFAM: Na+/Picotransporter; KEGG: ajs:Ajs_1891 Na+/Pi-cotransporter
YP_002553153.1	PFAM: protein of unknown function UPF0118; GAF domain protein; SMART: GAF domain protein; KEGG: ajs:Ajs_1892 putative GAF sensor protein
YP_002553154.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002553155.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3217 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_002553156.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: aav:Aave_3216 enoyl-CoA hydratase/isomerase
YP_002553157.1	PFAM: protein of unknown function DUF28; KEGG: dac:Daci_3517 hypothetical protein
YP_002553158.1	PFAM: Glutathione S-transferase domain; KEGG: aav:Aave_3215 glutathione S-transferase, N-terminal domain
YP_002553159.1	PFAM: protein of unknown function DUF853 NPT hydrolase putative; SMART: AAA ATPase; KEGG: ajs:Ajs_1897 protein of unknown function DUF853, NPT hydrolase putative
YP_002553160.1	PFAM: protein of unknown function DUF28; KEGG: ajs:Ajs_1898 hypothetical protein
YP_002553161.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002553162.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_002553163.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: ajs:Ajs_1901 iojap-like protein
YP_002553164.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002553165.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ajs:Ajs_1903 maf protein
YP_002553166.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1904 CRP/FNR family transcriptional regulator
YP_002553167.1	PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1905 cytochrome d1, heme region
YP_002553168.1	PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_1906 radical SAM domain-containing protein
YP_002553169.1	KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator
YP_002553170.1	KEGG: ajs:Ajs_1908 AsnC family transcriptional regulator
YP_002553171.1	KEGG: ajs:Ajs_1909 AsnC family transcriptional regulator
YP_002553172.1	PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1910 cytochrome d1, heme region
YP_002553173.1	KEGG: ajs:Ajs_1911 hypothetical protein
YP_002553174.1	PFAM: cytochrome d1 heme region; KEGG: ajs:Ajs_1912 nitrite reductase (NO-forming)
YP_002553175.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_1913 uroporphyrin-III C-methyltransferase
YP_002553176.1	KEGG: ajs:Ajs_1914 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; SMART: RNA binding S1 domain protein
YP_002553177.1	catalyzes the transfer of an amino moiety
YP_002553178.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1917 transcriptional regulator CysB-like protein
YP_002553179.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: ajs:Ajs_1918 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_002553180.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ajs:Ajs_1919 permease YjgP/YjgQ family protein
YP_002553181.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ajs:Ajs_1920 permease YjgP/YjgQ family protein
YP_002553182.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ajs:Ajs_1921 PepA aminopeptidase
YP_002553183.1	PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC
YP_002553184.1	KEGG: ajs:Ajs_1923 hypothetical protein
YP_002553185.1	PFAM: Extracellular ligand-binding receptor; KEGG: aav:Aave_3159 extracellular ligand-binding receptor
YP_002553186.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002553187.1	KEGG: ajs:Ajs_1927 hypothetical protein
YP_002553188.1	KEGG: ajs:Ajs_1928 hypothetical protein
YP_002553189.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_1929 UspA domain-containing protein
YP_002553190.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1930 hypothetical protein
YP_002553191.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_002553192.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1932 short-chain dehydrogenase/reductase SDR
YP_002553193.1	PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A
YP_002553194.1	KEGG: ajs:Ajs_1934 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002553195.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ajs:Ajs_1935 peptidylprolyl isomerase, FKBP-type
YP_002553196.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_002553197.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ajs:Ajs_1937 glycine cleavage system H protein
YP_002553198.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ajs:Ajs_1938 glycine cleavage system T protein
YP_002553199.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_1939 TRAP dicarboxylate transporter, DctM subunit
YP_002553200.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_1940 tripartite ATP-independent periplasmic transporter DctQ
YP_002553201.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit
YP_002553202.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_1942 AsnC family transcriptional regulator
YP_002553203.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_1943 TonB-dependent receptor
YP_002553204.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_1946 AraC family transcriptional regulator
YP_002553205.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1947 ABC transporter related
YP_002553206.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1948 inner-membrane translocator
YP_002553207.1	PFAM: protein of unknown function DUF534; KEGG: ajs:Ajs_1949 hypothetical protein
YP_002553208.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ajs:Ajs_1950 electron-transferring-flavoprotein dehydrogenase
YP_002553209.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_1951 methyl-accepting chemotaxis sensory transducer
YP_002553210.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1952 integral membrane sensor signal transduction histidine kinase
YP_002553211.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_1953 two component transcriptional regulator
YP_002553212.1	KEGG: ajs:Ajs_1954 PAP2 (acid phosphatase) superfamily protein-like protein
YP_002553213.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase
YP_002553214.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_1956 uncharacterized peroxidase-related enzyme
YP_002553215.1	PFAM: DTW domain containing protein; KEGG: ajs:Ajs_1957 DTW domain-containing protein
YP_002553216.1	PFAM: Catalase domain protein; KEGG: ajs:Ajs_1958 catalase
YP_002553217.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_1959 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002553218.1	KEGG: ajs:Ajs_1960 LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; regulatory protein LuxR
YP_002553219.1	KEGG: ajs:Ajs_1961 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_002553220.1	KEGG: ajs:Ajs_1962 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_002553221.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase
YP_002553222.1	KEGG: ajs:Ajs_1965 hypothetical protein
YP_002553223.1	KEGG: ajs:Ajs_1966 hypothetical protein
YP_002553224.1	KEGG: ajs:Ajs_1967 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_002553225.1	PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: ajs:Ajs_1968 Sel1 domain-containing protein
YP_002553226.1	KEGG: ajs:Ajs_1969 hypothetical protein
YP_002553227.1	KEGG: ajs:Ajs_1970 hypothetical protein
YP_002553228.1	KEGG: ajs:Ajs_1971 hypothetical protein
YP_002553229.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: dac:Daci_3380 two component LuxR family transcriptional regulator
YP_002553230.1	PFAM: ATP-binding region ATPase domain protein; KEGG: dac:Daci_3381 putative signal transduction histidine kinase
YP_002553231.1	PFAM: AsmA family protein; KEGG: aav:Aave_2673 AsmA family protein
YP_002553234.1	PFAM: pseudouridine synthase; KEGG: dac:Daci_4251 pseudouridine synthase
YP_002553235.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1978 succinate semialdehyde dehydrogenase
YP_002553236.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002553237.1	KEGG: ajs:Ajs_1980 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002553238.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002553239.1	PFAM: glutamyl-tRNA synthetase class Ic; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase
YP_002553240.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase
YP_002553241.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1984 LysR family transcriptional regulator
YP_002553242.1	PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ajs:Ajs_1985 pirin domain-containing protein
YP_002553243.1	PFAM: DoxX family protein; KEGG: ajs:Ajs_1986 DoxX family protein
YP_002553244.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_002553245.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_002553246.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_1989 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002553247.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1990 glucarate dehydratase
YP_002553248.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002553249.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1992 hypothetical protein
YP_002553250.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_002553251.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1994 hypothetical protein
YP_002553252.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_1995 GntR family transcriptional regulator
YP_002553253.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1996 mandelate racemase/muconate lactonizing protein
YP_002553254.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1997 hypothetical protein
YP_002553255.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase
YP_002553256.1	PFAM: protein of unknown function DUF469; KEGG: ajs:Ajs_2000 hypothetical protein
YP_002553257.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002553258.1	KEGG: ajs:Ajs_2002 hypothetical protein
YP_002553259.1	KEGG: bxe:Bxe_C1207 putative chromate resistance protein
YP_002553260.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pol:Bpro_2503 chromate transporter
YP_002553261.1	PFAM: zinc/iron permease; KEGG: pna:Pnap_1484 zinc/iron permease
YP_002553262.1	KEGG: maq:Maqu_3197 putative (L31491) ORF2; putative (plasmid pTOM9)
YP_002553263.1	KEGG: ppw:PputW619_5164 hypothetical protein
YP_002553264.1	PFAM: protein of unknown function DUF156; KEGG: pcr:Pcryo_1769 hypothetical protein
YP_002553265.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rme:Rmet_6211 protein of unknown function DUF6, transmembrane
YP_002553266.1	KEGG: ajs:Ajs_2005 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein
YP_002553267.1	KEGG: ajs:Ajs_2006 hypothetical protein
YP_002553268.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein
YP_002553269.1	PFAM: protein of unknown function DUF1311; KEGG: ajs:Ajs_2008 hypothetical protein
YP_002553270.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]
YP_002553271.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2010 LysR family transcriptional regulator
YP_002553272.1	KEGG: ajs:Ajs_2011 hypothetical protein
YP_002553274.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2744 short chain dehydrogenase
YP_002553275.1	KEGG: ajs:Ajs_0331 hypothetical protein
YP_002553276.1	KEGG: aav:Aave_2521 hypothetical protein
YP_002553277.1	KEGG: afw:Anae109_1004 hypothetical protein
YP_002553278.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ajs:Ajs_2012 CBS domain-containing protein
YP_002553279.1	KEGG: ajs:Ajs_2013 hypothetical protein
YP_002553280.1	PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: ajs:Ajs_2014 glucose sorbosone dehydrogenase
YP_002553281.1	PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_2015 isochorismatase hydrolase
YP_002553282.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_002553283.1	KEGG: ajs:Ajs_2017 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein; EAL domain protein
YP_002553284.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2018 hypothetical protein
YP_002553285.1	KEGG: ajs:Ajs_2019 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding
YP_002553286.1	PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada
YP_002553287.1	PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: ajs:Ajs_2021 phosphomannomutase
YP_002553288.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: ajs:Ajs_2022 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
YP_002553289.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_2023 GCN5-related N-acetyltransferase
YP_002553290.1	KEGG: ajs:Ajs_2024 hypothetical protein
YP_002553291.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: ajs:Ajs_2025 deaminase-reductase domain-containing protein
YP_002553292.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2026 TolC family type I secretion outer membrane protein
YP_002553293.1	SMART: Rhodanese domain protein; KEGG: ajs:Ajs_2027 rhodanese domain-containing protein
YP_002553294.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2028 methyltransferase type 11
YP_002553295.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator
YP_002553296.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase
YP_002553297.1	KEGG: ajs:Ajs_2031 hypothetical protein
YP_002553298.1	KEGG: ajs:Ajs_2032 hypothetical protein
YP_002553299.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_2033 TonB-dependent receptor
YP_002553300.1	KEGG: ajs:Ajs_2034 hypothetical protein
YP_002553301.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: ajs:Ajs_2035 chromate transporter
YP_002553302.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_2036 AsnC family transcriptional regulator
YP_002553303.1	PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: ajs:Ajs_2037 saccharopine dehydrogenase
YP_002553304.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase
YP_002553305.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_2039 GntR family transcriptional regulator
YP_002553306.1	MDM; functions in conversion of succinate to propionate
YP_002553307.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_002553308.1	PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase
YP_002553309.1	PFAM: protein of unknown function DUF1200; KEGG: mms:mma_3107 hypothetical protein
YP_002553310.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: ajs:Ajs_2043 carbamoyl-phosphate synthase L chain, ATP-binding
YP_002553311.1	KEGG: ajs:Ajs_2044 lactoylglutathione lyase
YP_002553312.1	KEGG: ajs:Ajs_2045 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_002553313.1	KEGG: reu:Reut_A1911 putative transcription regulator protein
YP_002553314.1	KEGG: pst:PSPTO_0030 hypothetical protein
YP_002553316.1	KEGG: reh:PHG407 putative TniA-like transposition protein
YP_002553318.1	KEGG: pen:PSEEN3305 hypothetical protein
YP_002553319.1	KEGG: psb:Psyr_3724 hypothetical protein
YP_002553320.1	KEGG: pna:Pnap_4782 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases
YP_002553321.1	KEGG: xac:XAC2130 hypothetical protein
YP_002553322.1	KEGG: stp:Strop_1435 hypothetical protein
YP_002553325.1	KEGG: xac:XAC2130 hypothetical protein
YP_002553326.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2046 short-chain dehydrogenase/reductase SDR
YP_002553327.1	KEGG: ajs:Ajs_2047 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_002553328.1	KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase
YP_002553329.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_002553330.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_2050 TRAP dicarboxylate transporter, DctP subunit
YP_002553331.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_2051 TRAP dicarboxylate transporter, DctM subunit
YP_002553332.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_2052 tripartite ATP-independent periplasmic transporter DctQ
YP_002553333.1	TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ajs:Ajs_2053 carbohydrate kinase
YP_002553334.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ajs:Ajs_2054 LacI family transcription regulator
YP_002553335.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2055 OmpA/MotB domain-containing protein
YP_002553336.1	PFAM: ChaC family protein; KEGG: ajs:Ajs_2056 ChaC family protein
YP_002553337.1	PFAM: superoxide dismutase copper/zinc binding; KEGG: ajs:Ajs_2057 superoxide dismutase, copper/zinc binding
YP_002553338.1	KEGG: ajs:Ajs_2058 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_002553339.1	PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_2059 auxin efflux carrier
YP_002553340.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: ajs:Ajs_2060 tRNA-dihydrouridine synthase A
YP_002553341.1	KEGG: ajs:Ajs_2061 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; EAL domain protein
YP_002553342.1	PFAM: RelA/SpoT domain protein; KEGG: ajs:Ajs_2062 RelA/SpoT domain-containing protein
YP_002553343.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular
YP_002553344.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ajs:Ajs_2064 electron transport complex, RnfABCDGE type, B subunit
YP_002553345.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_2065 methyl-accepting chemotaxis sensory transducer
YP_002553346.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_002553347.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_002553348.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ajs:Ajs_2068 twitching motility protein
YP_002553349.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_002553350.1	involved in methylation of ribosomal protein L3
YP_002553351.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2071 ABC transporter related
YP_002553352.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002553353.1	KEGG: ajs:Ajs_1832 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase
YP_002553354.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: ajs:Ajs_1831 ATP-dependent Clp protease adaptor protein ClpS
YP_002553355.1	KEGG: ajs:Ajs_1830 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_002553356.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: ajs:Ajs_1829 putative transmembrane protein
YP_002553357.1	SMART: helicase c2; DEAD-like helicases; KEGG: ajs:Ajs_1828 helicase C2
YP_002553358.1	SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_1827 protein phosphatase 2C domain-containing protein
YP_002553359.1	KEGG: ajs:Ajs_1826 hypothetical protein
YP_002553360.1	PFAM: AFG1-family ATPase; KEGG: ajs:Ajs_1825 AFG1 family ATPase
YP_002553361.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002553362.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ajs:Ajs_1823 2-oxoglutarate dehydrogenase E2 component
YP_002553363.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_002553364.1	PFAM: protein of unknown function UPF0118; KEGG: ajs:Ajs_1821 hypothetical protein
YP_002553365.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1820 hypothetical protein
YP_002553366.1	KEGG: ajs:Ajs_1819 hypothetical protein
YP_002553367.1	PFAM: protein of unknown function DUF1446; KEGG: ajs:Ajs_1818 hypothetical protein
YP_002553368.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator
YP_002553369.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_1816 UspA domain-containing protein
YP_002553370.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ajs:Ajs_1815 hydroxypyruvate isomerase
YP_002553371.1	KEGG: ajs:Ajs_1814 putative lipoprotein
YP_002553372.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_1813 ABC transporter related
YP_002553373.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1812 binding-protein-dependent transport systems inner membrane component
YP_002553374.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component
YP_002553375.1	PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_1810 extracellular solute-binding protein
YP_002553376.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_1809 enoyl-[acyl-carrier-protein] reductase [NADH]
YP_002553377.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I
YP_002553378.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein
YP_002553379.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein
YP_002553380.1	PFAM: Fe(II) trafficking protein YggX; KEGG: ajs:Ajs_1798 hypothetical protein
YP_002553381.1	PFAM: protein of unknown function UPF0126; KEGG: ajs:Ajs_1797 hypothetical protein
YP_002553382.1	TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: ajs:Ajs_1796 hypothetical protein
YP_002553383.1	PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: ajs:Ajs_1795 nitrite/sulfite reductase hemoprotein beta subunit
YP_002553384.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1794 hypothetical protein
YP_002553385.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin)
YP_002553386.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_002553387.1	KEGG: ajs:Ajs_1791 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding
YP_002553388.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_1790 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002553389.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_1789 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002553390.1	PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ajs:Ajs_1788 SH3 type 3 domain-containing protein
YP_002553391.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase
YP_002553392.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1786 FAD dependent oxidoreductase
YP_002553393.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: ajs:Ajs_1785 thiamine biosynthesis protein ThiS
YP_002553394.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002553395.1	KEGG: ajs:Ajs_1783 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_002553396.1	KEGG: ajs:Ajs_1782 hypothetical protein
YP_002553397.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_002553398.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_1780 enoyl-CoA hydratase/isomerase
YP_002553399.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator
YP_002553400.1	PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase
YP_002553401.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_1777 acyl-CoA dehydrogenase domain-containing protein
YP_002553402.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ajs:Ajs_1776 IclR family transcriptional regulator
YP_002553403.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase
YP_002553404.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_002553405.1	KEGG: ajs:Ajs_1773 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain
YP_002553406.1	KEGG: ajs:Ajs_1772 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002553407.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002553408.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002553409.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_002553410.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002553411.1	KEGG: ajs:Ajs_1767 putative transmembrane protein
YP_002553412.1	KEGG: ajs:Ajs_1766 putative transmembrane protein
YP_002553413.1	PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein
YP_002553414.1	PFAM: diacylglycerol kinase; KEGG: ajs:Ajs_1764 diacylglycerol kinase
YP_002553415.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1763 hypothetical protein
YP_002553416.1	PFAM: nitrogen regulatory protein P-II; KEGG: ajs:Ajs_1762 nitrogen regulatory protein P-II
YP_002553417.1	KEGG: ajs:Ajs_1761 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase
YP_002553418.1	PFAM: protein of unknown function DUF482; KEGG: ajs:Ajs_1760 hypothetical protein
YP_002553419.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ajs:Ajs_1759 putative CheW protein
YP_002553420.1	PFAM: Inorganic pyrophosphatase; KEGG: ajs:Ajs_1758 inorganic diphosphatase
YP_002553421.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_002553422.1	PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase
YP_002553423.1	KEGG: ajs:Ajs_1755 hypothetical protein
YP_002553424.1	KEGG: ajs:Ajs_1750 hypothetical protein
YP_002553425.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_002553426.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_002553427.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ajs:Ajs_1747 molybdopterin molybdochelatase
YP_002553428.1	PFAM: Thioredoxin domain; KEGG: ajs:Ajs_1746 thioredoxin domain-containing protein
YP_002553429.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002553430.1	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11
YP_002553431.1	KEGG: ajs:Ajs_1743 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein
YP_002553432.1	PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic
YP_002553433.1	KEGG: ajs:Ajs_1741 hypothetical protein
YP_002553434.1	KEGG: bte:BTH_I0079 putative lipoprotein
YP_002553435.1	KEGG: ajs:Ajs_1725 TPR repeat-containing protein; TIGRFAM: tol-pal system protein YbgF; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_002553436.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_1724 TonB box domain-containing protein
YP_002553437.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_002553438.1	KEGG: ajs:Ajs_1722 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_002553439.1	PFAM: Ankyrin; SMART: Ankyrin; KEGG: ajs:Ajs_1721 ankyrin
YP_002553440.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_1720 TatD family hydrolase
YP_002553441.1	PFAM: type IV pilus assembly PilZ; KEGG: ajs:Ajs_1719 type IV pilus assembly PilZ
YP_002553442.1	KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase
YP_002553443.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002553444.1	PFAM: aminodeoxychorismate lyase; KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase
YP_002553445.1	TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase)
YP_002553446.1	PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: ajs:Ajs_1714 thioesterase superfamily protein
YP_002553447.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein
YP_002553448.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_1712 hydratase/decarboxylase
YP_002553449.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ajs:Ajs_1711 iron-containing alcohol dehydrogenase
YP_002553450.1	PFAM: histidine kinase HAMP region domain protein; SMART: PAS domain containing protein; KEGG: ajs:Ajs_1710 putative PAS/PAC sensor protein
YP_002553451.1	KEGG: ajs:Ajs_1709 hypothetical protein
YP_002553452.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein
YP_002553453.1	PFAM: RNA binding S1 domain protein; Resolvase RNase H domain protein fold; SMART: RNA binding S1 domain protein; Resolvase RNase H domain protein fold; KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein
YP_002553454.1	KEGG: ajs:Ajs_1705 hypothetical protein
YP_002553455.1	PFAM: protein of unknown function DUF72; KEGG: ajs:Ajs_1704 hypothetical protein
YP_002553456.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter
YP_002553457.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1702 Bcr/CflA subfamily drug resistance transporter
YP_002553458.1	PFAM: protein of unknown function DUF1566; KEGG: ajs:Ajs_1701 hypothetical protein
YP_002553459.1	probable dehydrogenase
YP_002553460.1	KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein
YP_002553461.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_1698 GCN5-related N-acetyltransferase
YP_002553462.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ajs:Ajs_1697 alcohol dehydrogenase
YP_002553463.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1696 hypothetical protein
YP_002553464.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_002553465.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dac:Daci_2203 CMP/dCMP deaminase zinc-binding
YP_002553466.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1693 extracellular ligand-binding receptor
YP_002553467.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter
YP_002553468.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_1691 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_002553469.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1690 ABC transporter related
YP_002553470.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1689 phosphonate ABC transporter, inner membrane subunit
YP_002553471.1	PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3918 transposase, IS4 family protein
YP_002553472.1	KEGG: ajs:Ajs_1688 NAD(P)H dehydrogenase (quinone)
YP_002553473.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_1687 acyl-CoA dehydrogenase domain-containing protein
YP_002553474.1	KEGG: ajs:Ajs_1686 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002553475.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002553476.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
YP_002553477.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1683 ABC transporter related
YP_002553478.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1682 ABC transporter related
YP_002553479.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1681 inner-membrane translocator
YP_002553480.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator
YP_002553481.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1679 extracellular ligand-binding receptor
YP_002553482.1	activates fatty acids by binding to coenzyme A
YP_002553483.1	PFAM: protein of unknown function UPF0061; KEGG: ajs:Ajs_1677 hypothetical protein
YP_002553484.1	TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: ajs:Ajs_1676 methionine-R-sulfoxide reductase
YP_002553485.1	Involved in cell division; probably involved in intracellular septation
YP_002553486.1	PFAM: BolA family protein; KEGG: ajs:Ajs_1674 transcriptional regulator BolA
YP_002553487.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ajs:Ajs_1673 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002553488.1	PFAM: protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein
YP_002553489.1	KEGG: ajs:Ajs_1671 hypothetical protein
YP_002553490.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002553491.1	PFAM: CBS domain containing protein; HPP family protein; SMART: CBS domain containing protein; KEGG: ajs:Ajs_1669 CBS domain-containing protein
YP_002553492.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_002553493.1	KEGG: ajs:Ajs_1667 hypothetical protein
YP_002553494.1	TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_1666 N-formylglutamate amidohydrolase
YP_002553495.1	KEGG: ajs:Ajs_1665 hypothetical protein
YP_002553496.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator
YP_002553497.1	KEGG: ajs:Ajs_1663 hypothetical protein
YP_002553498.1	PFAM: protein of unknown function DUF748; KEGG: ajs:Ajs_1662 hypothetical protein
YP_002553499.1	PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_1661 lytic transglycosylase, catalytic
YP_002553500.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002553501.1	PFAM: ATP-cone domain protein; KEGG: ajs:Ajs_1659 transcriptional regulator NrdR
YP_002553502.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002553503.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ajs:Ajs_1657 XRE family transcriptional regulator
YP_002553504.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_002553505.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold
YP_002553506.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1654 ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_002553507.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_1653 HAD family hydrolase
YP_002553508.1	KEGG: ajs:Ajs_1652 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase
YP_002553509.1	KEGG: rfr:Rfer_3315 putative ATP-dependent protease La, putative
YP_002553510.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: ajs:Ajs_1650 rhodanese domain-containing protein
YP_002553511.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE
YP_002553512.1	KEGG: ajs:Ajs_1648 hypothetical protein
YP_002553513.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1646 alpha/beta hydrolase fold
YP_002553514.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor
YP_002553515.1	KEGG: dac:Daci_2556 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
YP_002553516.1	PFAM: inner-membrane translocator; KEGG: dac:Daci_2555 inner-membrane translocator
YP_002553517.1	PFAM: inner-membrane translocator; KEGG: dac:Daci_2554 inner-membrane translocator
YP_002553518.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_2553 ABC transporter related
YP_002553519.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_2552 ABC transporter related
YP_002553520.1	KEGG: pna:Pnap_1238 fibronectin, type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein
YP_002553521.1	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_2551 extracellular ligand-binding receptor
YP_002553522.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: dac:Daci_2530 putative sigma54 specific transcriptional regulator
YP_002553523.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_3007 TonB-dependent siderophore receptor
YP_002553524.1	PFAM: PepSY-associated TM helix domain protein; KEGG: mpt:Mpe_A1737 hypothetical protein
YP_002553525.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein
YP_002553526.1	KEGG: ajs:Ajs_1643 hypothetical protein
YP_002553527.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1642 hypothetical protein
YP_002553528.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_1641 two component transcriptional regulator
YP_002553529.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_1640 integral membrane sensor signal transduction histidine kinase
YP_002553530.1	PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein
YP_002553531.1	KEGG: ajs:Ajs_1638 hypothetical protein
YP_002553532.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_1637 XRE family transcriptional regulator
YP_002553533.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1636 thioesterase superfamily protein
YP_002553534.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_002553535.1	catalyzes the conversion of citrate to isocitrate
YP_002553536.1	TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ajs:Ajs_1633 methylitaconate delta2-delta3-isomerase
YP_002553537.1	KEGG: ajs:Ajs_1632 2,3-dimethylmalate lyase
YP_002553538.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator
YP_002553539.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_002553540.1	KEGG: ajs:Ajs_1629 hypothetical protein
YP_002553541.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002553542.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase
YP_002553543.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bpy:Bphyt_2718 methyl-accepting chemotaxis sensory transducer with cache sensor
YP_002553544.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
YP_002553545.1	PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: ajs:Ajs_1624 HhH-GPD family protein
YP_002553546.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002553547.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ajs:Ajs_1622 TPR repeat-containing protein
YP_002553548.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ajs:Ajs_1621 peptidylprolyl isomerase
YP_002553549.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ajs:Ajs_1620 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_002553550.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: ajs:Ajs_1619 UDP-2,3-diacylglucosamine hydrolase
YP_002553551.1	PFAM: protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein
YP_002553552.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_002553553.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator
YP_002553554.1	KEGG: ajs:Ajs_1615 hypothetical protein
YP_002553555.1	PFAM: phospholipase/Carboxylesterase; KEGG: ajs:Ajs_1614 phospholipase/carboxylesterase
YP_002553556.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B
YP_002553557.1	PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor
YP_002553558.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1611 alpha/beta hydrolase fold
YP_002553559.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002553560.1	KEGG: ajs:Ajs_1609 hypothetical protein
YP_002553561.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002553562.1	PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein
YP_002553563.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1606 short-chain dehydrogenase/reductase SDR
YP_002553564.1	KEGG: ajs:Ajs_1605 hypothetical protein
YP_002553566.1	PFAM: TadE family protein; KEGG: vei:Veis_0253 TadE family protein
YP_002553567.1	KEGG: mxa:MXAN_3375 putative adventurous gliding protein T
YP_002553568.1	PFAM: protein of unknown function DUF192; KEGG: bpy:Bphyt_6879 protein of unknown function DUF192
YP_002553569.1	PFAM: type II secretion system protein; KEGG: vei:Veis_0249 type II secretion system protein
YP_002553570.1	PFAM: type II secretion system protein; KEGG: slo:Shew_0643 type II secretion system protein
YP_002553571.1	PFAM: Forkhead-associated protein; type II secretion system protein E; SMART: Forkhead-associated protein; KEGG: vei:Veis_0247 type II secretion system protein E
YP_002553572.1	PFAM: type II and III secretion system protein; KEGG: reh:H16_A0982 flp pilus assembly protein secretin CpaC
YP_002553573.1	KEGG: slo:Shew_0648 hypothetical protein
YP_002553574.1	KEGG: reh:H16_A0979 hypothetical protein
YP_002553575.1	PFAM: transposase mutator type; KEGG: ajs:Ajs_2663 transposase, mutator type
YP_002553577.1	KEGG: ajs:Ajs_1591 ParB family protein
YP_002553578.1	PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3918 transposase, IS4 family protein
YP_002553579.1	KEGG: ajs:Ajs_1590 hypothetical protein
YP_002553580.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: ajs:Ajs_1589 histone family protein DNA-binding protein
YP_002553582.1	KEGG: sew:SeSA_B0083 Hg(II)-responsive transcriptional regulator; TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR
YP_002553583.1	PFAM: Mercuric transport protein MerT; KEGG: asa:ASA_P4G088 putative mercuric transport protein
YP_002553584.1	TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sew:SeSA_B0081 mercuric transport protein periplasmic component
YP_002553585.1	PFAM: MerC mercury resistance protein; KEGG: kpn:KPN_pKPN4p07069 putative mercury transport protein MerC
YP_002553586.1	TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: kpn:KPN_pKPN4p07068 putative mercuric reductase
YP_002553587.1	KEGG: kpn:KPN_pKPN4p07067 transcriptional regulator MerD; TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; SMART: regulatory protein MerR
YP_002553588.1	PFAM: MerE family protein; KEGG: kpn:KPN_pKPN4p07066 putative mercury resistance protein
YP_002553589.1	PFAM: Integrase catalytic region; EAL domain protein; SMART: EAL domain protein; KEGG: kpn:KPN_pKPN4p07065 hypothetical protein
YP_002553590.1	TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mfa:Mfla_1489 arsenical pump membrane protein
YP_002553591.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mfa:Mfla_1490 signal transduction protein
YP_002553592.1	KEGG: mfa:Mfla_1491 arsenite-activated ATPase (ArsA); TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase
YP_002553593.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: mfa:Mfla_1492 arsenical resistance operon trans-acting repressor ArsD
YP_002553594.1	PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: mfa:Mfla_1493 ArsR family transcriptional regulator
YP_002553595.1	KEGG: scl:sce3558 hypothetical protein; TIGRFAM: glycerate kinase; PFAM: glycerate kinase
YP_002553596.1	TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: pla:Plav_3391 lipoprotein signal peptidase
YP_002553597.1	PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: shn:Shewana3_4320 signal peptidase II
YP_002553598.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_2303 heavy metal translocating P-type ATPase
YP_002553599.1	KEGG: rme:Rmet_2302 transcriptional regulator, MerR family; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR
YP_002553600.1	KEGG: rme:Rmet_2299 cation efflux protein
YP_002553601.1	PFAM: cytochrome c class I; iron permease FTR1; KEGG: dac:Daci_0482 iron permease FTR1
YP_002553602.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bpt:Bpet4570 putative heavy-metal transporting P-type ATPase
YP_002553603.1	KEGG: ajs:Ajs_1487 hypothetical protein
YP_002553604.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: dac:Daci_0477 MerR family transcriptional regulator
YP_002553605.1	KEGG: dac:Daci_0476 hypothetical protein
YP_002553606.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ajs:Ajs_4296 addiction module antitoxin
YP_002553607.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: reu:Reut_D6453 RelB antitoxin
YP_002553608.1	KEGG: reu:Reut_D6451 hypothetical protein
YP_002553609.1	KEGG: reu:Reut_D6450 hypothetical protein
YP_002553610.1	KEGG: reu:Reut_D6449 hypothetical protein
YP_002553611.1	KEGG: ajs:Ajs_4302 hypothetical protein
YP_002553612.1	KEGG: rfr:Rfer_1071 hypothetical protein
YP_002553613.1	PFAM: Integrase catalytic region; KEGG: mlo:mlr6150 transposase
YP_002553614.1	PFAM: transposase IS3/IS911 family protein; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein
YP_002553615.1	PFAM: Gp37Gp68 family protein; KEGG: rfr:Rfer_1073 phage Gp37Gp68
YP_002553616.1	PFAM: Domain of unknown function DUF1814; KEGG: vei:Veis_2690 hypothetical protein
YP_002553617.1	KEGG: vei:Veis_2691 hypothetical protein
YP_002553618.1	KEGG: dar:Daro_2233 hypothetical protein
YP_002553619.1	KEGG: ajs:Ajs_1580 hypothetical protein
YP_002553620.1	KEGG: reh:PHG163 hypothetical protein
YP_002553621.1	KEGG: dar:Daro_2333 hypothetical protein
YP_002553622.1	KEGG: dac:Daci_0472 hypothetical protein
YP_002553623.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein
YP_002553624.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ajs:Ajs_2704 RND family efflux transporter MFP subunit
YP_002553625.1	PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2705 outer membrane efflux protein
YP_002553626.1	KEGG: ajs:Ajs_1480 hypothetical protein
YP_002553627.1	KEGG: ajs:Ajs_2707 membrane protein-like protein
YP_002553628.1	KEGG: ajs:Ajs_1478 hypothetical protein
YP_002553629.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein
YP_002553630.1	KEGG: ajs:Ajs_2709 hypothetical protein
YP_002553631.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase
YP_002553632.1	PFAM: cytochrome c class I; KEGG: dsh:Dshi_0189 cytochrome c class I
YP_002553633.1	KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase
YP_002553634.1	KEGG: ajs:Ajs_2714 hypothetical protein
YP_002553635.1	KEGG: ajs:Ajs_2715 hypothetical protein
YP_002553636.1	KEGG: ajs:Ajs_1463 hypothetical protein
YP_002553637.1	PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2721 blue (type1) copper domain-containing protein
YP_002553638.1	PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_2722 multicopper oxidase, type 3
YP_002553639.1	KEGG: ajs:Ajs_2723 putative copper resistance-related lipoprotein
YP_002553640.1	KEGG: ajs:Ajs_2724 hypothetical protein
YP_002553641.1	KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver
YP_002553642.1	KEGG: ajs:Ajs_2726 heavy metal sensor signal transduction histidine kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_002553643.1	KEGG: ajs:Ajs_2727 hypothetical protein
YP_002553644.1	PFAM: Rhodanese domain protein; regulatory protein ArsR; SMART: Rhodanese domain protein; regulatory protein ArsR; KEGG: rfr:Rfer_0462 ArsR family transcriptional regulator
YP_002553645.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_3127 methyltransferase type 11
YP_002553646.1	PFAM: DsrE family protein; KEGG: sse:Ssed_3126 DsrE family protein
YP_002553647.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: afe:Lferr_0905 methyltransferase type 11
YP_002553648.1	PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 cobalt-zinc-cadmium outer membrane resistance protein
YP_002553649.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: har:HEAR0523 cobalt-zinc-cadmium resistance protein CzcB (cation efflux system protein CzcB)
YP_002553650.1	PFAM: nitrogen regulatory protein P-II; KEGG: har:HEAR1599 regulatory protein PII
YP_002553651.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_1327 heavy metal efflux pump CzcA
YP_002553652.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: mms:mma_0057 inner membrane protein
YP_002553653.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_4435 heavy metal translocating P-type ATPase
YP_002553654.1	KEGG: dac:Daci_1091 two component heavy metal response transcriptional regulator; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver
YP_002553655.1	KEGG: mpt:Mpe_A1630 putative two-component sensor; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_002553656.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4649 hypothetical protein
YP_002553657.1	KEGG: ajs:Ajs_2727 hypothetical protein
YP_002553658.1	PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_1845 transposase IS3/IS911 family protein
YP_002553659.1	PFAM: Integrase catalytic region; KEGG: ajs:Ajs_1844 integrase catalytic subunit
YP_002553660.1	KEGG: ajs:Ajs_2728 hypothetical protein
YP_002553661.1	KEGG: mpt:Mpe_B0526 ISRSO5-transposase protein
YP_002553662.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002553663.1	KEGG: ajs:Ajs_2735 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_002553664.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002553665.1	PFAM: Colicin V production protein; KEGG: ajs:Ajs_2737 colicin V production protein
YP_002553666.1	PFAM: Sporulation domain protein; KEGG: ajs:Ajs_2738 sporulation domain-containing protein
YP_002553667.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ajs:Ajs_2739 FolC bifunctional protein
YP_002553668.1	PFAM: arsenate reductase and related; KEGG: ajs:Ajs_2740 arsenate reductase and related
YP_002553669.1	PFAM: 17 kDa surface antigen; KEGG: ajs:Ajs_2741 17 kDa surface antigen
YP_002553670.1	PFAM: protein of unknown function DUF1255; KEGG: ajs:Ajs_2742 hypothetical protein
YP_002553671.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_002553672.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: ajs:Ajs_2744 ExsB protein
YP_002553673.1	TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: ajs:Ajs_2745 hypothetical protein
YP_002553674.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2746 ECF subfamily RNA polymerase sigma-24 factor
YP_002553675.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_2747 alkylhydroperoxidase
YP_002553676.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_2748 anion transporter
YP_002553677.1	KEGG: ajs:Ajs_2749 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_002553678.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002553679.1	KEGG: ajs:Ajs_2751 hypothetical protein
YP_002553680.1	KEGG: ajs:Ajs_2752 putative metal dependent phosphohydrolase
YP_002553681.1	PFAM: protein of unknown function DUF205; KEGG: ajs:Ajs_2753 acyl-phosphate glycerol-3-phosphate acyltransferase
YP_002553682.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ajs:Ajs_2754 YbaK/EbsC protein
YP_002553683.1	PFAM: aldo/keto reductase; KEGG: ajs:Ajs_2755 aldo/keto reductase
YP_002553684.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_2756 alpha/beta hydrolase fold
YP_002553685.1	TIGRFAM: diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase
YP_002553686.1	KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_002553687.1	TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ajs:Ajs_2759 alanyl aminopeptidase
YP_002553688.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_002553689.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_002553690.1	PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ajs:Ajs_2762 ornithine decarboxylase
YP_002553691.1	KEGG: ajs:Ajs_2763 hypothetical protein
YP_002553692.1	PFAM: band 7 protein; SMART: band 7 protein; KEGG: ajs:Ajs_2764 SPFH domain-containing protein/band 7 family protein
YP_002553693.1	PFAM: ferredoxin; KEGG: ajs:Ajs_2765 ferredoxin
YP_002553694.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: ajs:Ajs_2766 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_002553695.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002553696.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: ajs:Ajs_2768 NusB antitermination factor
YP_002553697.1	PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_2769 aminotransferase
YP_002553698.1	TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2770 4-hydroxybenzoyl-CoA thioesterase
YP_002553699.1	TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_2771 MotA/TolQ/ExbB proton channel
YP_002553700.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR
YP_002553701.1	TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: ajs:Ajs_2773 TonB family protein
YP_002553702.1	PFAM: General substrate transporter; KEGG: ajs:Ajs_2774 general substrate transporter
YP_002553703.1	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II
YP_002553704.1	KEGG: ajs:Ajs_2776 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002553705.1	TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ajs:Ajs_2777 cytochrome c oxidase, subunit III
YP_002553706.1	TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV
YP_002553707.1	PFAM: Surfeit locus 1 family protein; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein
YP_002553708.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase
YP_002553709.1	PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: ajs:Ajs_2781 two component fis family transcriptional regulator
YP_002553710.1	KEGG: ajs:Ajs_2782 glutathione S-transferase-like protein
YP_002553711.1	PFAM: peptidase U32; KEGG: ajs:Ajs_2783 peptidase U32
YP_002553712.1	KEGG: ajs:Ajs_2784 hypothetical protein
YP_002553713.1	KEGG: ajs:Ajs_2785 hypothetical protein
YP_002553714.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_2786 XRE family transcriptional regulator
YP_002553715.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_002553716.1	KEGG: ajs:Ajs_2788 hypothetical protein
YP_002553717.1	PFAM: HpcH/HpaI aldolase; KEGG: ajs:Ajs_2789 HpcH/HpaI aldolase
YP_002553718.1	catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate
YP_002553719.1	catalyzes the oxidation of malate to oxaloacetate
YP_002553720.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_2792 GntR family transcriptional regulator
YP_002553721.1	TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: ajs:Ajs_2793 succinate dehydrogenase subunit C
YP_002553722.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: ajs:Ajs_2794 succinate dehydrogenase subunit D
YP_002553723.1	KEGG: ajs:Ajs_2795 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_002553724.1	KEGG: ajs:Ajs_2796 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin
YP_002553725.1	PFAM: protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein
YP_002553726.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_002553727.1	PFAM: protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein
YP_002553728.1	TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ajs:Ajs_2800 alcohol dehydrogenase
YP_002553729.1	KEGG: ajs:Ajs_2801 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase
YP_002553730.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ajs:Ajs_2802 antibiotic biosynthesis monooxygenase
YP_002553731.1	PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_2803 radical SAM domain-containing protein
YP_002553732.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor
YP_002553733.1	PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3
YP_002553734.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD
YP_002553735.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2808 acyl-CoA dehydrogenase domain-containing protein
YP_002553736.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit
YP_002553737.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_2810 electron transfer flavoprotein beta-subunit
YP_002553738.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_2811 MscS mechanosensitive ion channel
YP_002553739.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase
YP_002553740.1	PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein
YP_002553741.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_2814 ATPase
YP_002553742.1	PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 hypothetical protein
YP_002553743.1	PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein
YP_002553744.1	TIGRFAM: lytic murein transglycosylase B; KEGG: ajs:Ajs_2817 lytic murein transglycosylase B
YP_002553745.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2818 LysR family transcriptional regulator
YP_002553746.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2819 hypothetical protein
YP_002553747.1	KEGG: ajs:Ajs_2820 putative transporter signal peptide protein
YP_002553748.1	KEGG: ajs:Ajs_2821 putative lipoprotein
YP_002553749.1	PFAM: CS; KEGG: ajs:Ajs_2822 CS protein
YP_002553750.1	PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_2823 hypothetical protein
YP_002553751.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2824 ABC transporter related
YP_002553752.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_2825 fis family transcriptional regulator
YP_002553753.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2826 RND efflux system outer membrane lipoprotein
YP_002553754.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002553755.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_2829 extracellular ligand-binding receptor
YP_002553756.1	PFAM: ANTAR domain protein; KEGG: ajs:Ajs_2830 response regulator receiver/ANTAR domain-containing protein
YP_002553757.1	KEGG: ajs:Ajs_2831 twin-arginine translocation pathway signal
YP_002553758.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2832 nitrate ABC transporter, inner membrane subunit
YP_002553759.1	KEGG: ajs:Ajs_2833 nitrate ABC transporter, ATPase subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002553760.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ajs:Ajs_2834 signal-transduction protein
YP_002553761.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: ajs:Ajs_2835 hypothetical protein
YP_002553762.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_2836 RND family efflux transporter MFP subunit
YP_002553763.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_2837 hydrophobe/amphiphile efflux-1 (HAE1) family protein
YP_002553764.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_2838 RND efflux system outer membrane lipoprotein
YP_002553765.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor
YP_002553766.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit
YP_002553767.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein
YP_002553768.1	PFAM: Glycosyl transferase, family 3-like; KEGG: ajs:Ajs_2842 hypothetical protein
YP_002553769.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase
YP_002553770.1	PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2844 thioesterase superfamily protein
YP_002553771.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_2845 extracellular ligand-binding receptor
YP_002553772.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_2846 hypothetical protein
YP_002553773.1	PFAM: NnrS family protein; KEGG: ajs:Ajs_2847 NnrS family protein
YP_002553774.1	KEGG: ajs:Ajs_2848 hypothetical protein
YP_002553775.1	TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: ajs:Ajs_2849 hypothetical protein
YP_002553776.1	TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ajs:Ajs_2850 NifU family SUF system FeS assembly protein
YP_002553777.1	PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ajs:Ajs_2851 aminotransferase, class V
YP_002553778.1	PFAM: SufBD protein; KEGG: ajs:Ajs_2852 SufBD protein
YP_002553779.1	KEGG: ajs:Ajs_2853 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002553780.1	with SufCD activates cysteine desulfurase SufS
YP_002553781.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ajs:Ajs_2855 ArsR family transcriptional regulator
YP_002553782.1	PFAM: NIPSNAP family containing protein; KEGG: ajs:Ajs_2856 NIPSNAP family protein
YP_002553783.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ajs:Ajs_2857 antibiotic biosynthesis monooxygenase
YP_002553784.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002553785.1	KEGG: ajs:Ajs_2859 GatB/YqeY domain-containing protein
YP_002553786.1	KEGG: ajs:Ajs_2860 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_002553787.1	PFAM: protein of unknown function DUF156; KEGG: ajs:Ajs_2861 hypothetical protein
YP_002553788.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ajs:Ajs_2862 cation diffusion facilitator family transporter
YP_002553789.1	PFAM: protein of unknown function DUF938; KEGG: ajs:Ajs_2863 hypothetical protein
YP_002553790.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ajs:Ajs_2864 glutathione-dependent formaldehyde-activating, GFA
YP_002553791.1	KEGG: ajs:Ajs_2867 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_002553792.1	PFAM: protein of unknown function DUF45; KEGG: ajs:Ajs_2868 hypothetical protein
YP_002553793.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2869 hypothetical protein
YP_002553794.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2870 hypothetical protein
YP_002553795.1	PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_2871 hydroxymethylglutaryl-CoA lyase
YP_002553796.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_2872 L-carnitine dehydratase/bile acid-inducible protein F
YP_002553797.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator
YP_002553798.1	KEGG: ajs:Ajs_2874 hypothetical protein
YP_002553799.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002553800.1	KEGG: ajs:Ajs_2876 hypothetical protein
YP_002553801.1	TIGRFAM: Calcium-binding EF-hand-containing protein; PFAM: Na+/solute symporter; KEGG: ajs:Ajs_2877 Na+/solute symporter
YP_002553802.1	KEGG: ajs:Ajs_2878 hypothetical protein
YP_002553803.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002553804.1	PFAM: protein of unknown function DUF299; KEGG: ajs:Ajs_2880 hypothetical protein
YP_002553805.1	TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2881 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002553806.1	with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate
YP_002553807.1	TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_2883 bacterioferritin
YP_002553808.1	PFAM: flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit
YP_002553809.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_002553810.1	KEGG: ajs:Ajs_2886 hypothetical protein
YP_002553811.1	KEGG: ajs:Ajs_2887 hypothetical protein
YP_002553812.1	TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ajs:Ajs_2888 YccS/YhfK family integral membrane protein
YP_002553813.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_002553814.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002553815.1	KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase
YP_002553816.1	PFAM: protein of unknown function DUF513 hemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX
YP_002553817.1	KEGG: ajs:Ajs_2893 HemY domain-containing protein
YP_002553818.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_2895 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002553819.1	TIGRFAM: valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase
YP_002553820.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_2897 UDP-glucose pyrophosphorylase
YP_002553821.1	PFAM: SirA family protein; KEGG: ajs:Ajs_2898 SirA family protein
YP_002553822.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_2899 NUDIX hydrolase
YP_002553823.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_002553824.1	KEGG: ajs:Ajs_2960 hypothetical protein
YP_002553825.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002553826.1	PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: ajs:Ajs_2962 RNP-1 like RNA-binding protein
YP_002553827.1	KEGG: ajs:Ajs_2963 hypothetical protein
YP_002553828.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_2964 short-chain dehydrogenase/reductase SDR
YP_002553829.1	KEGG: ajs:Ajs_2965 putative lipoprotein
YP_002553830.1	KEGG: ajs:Ajs_2966 major facilitator superfamily transporter
YP_002553831.1	KEGG: ajs:Ajs_2967 hypothetical protein
YP_002553832.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: ajs:Ajs_2968 methyl-accepting chemotaxis sensory transducer
YP_002553833.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2969 cyclopropane-fatty-acyl-phospholipid synthase
YP_002553834.1	PFAM: protein of unknown function DUF1365; KEGG: ajs:Ajs_2970 hypothetical protein
YP_002553835.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2971 FAD dependent oxidoreductase
YP_002553836.1	PFAM: regulatory protein MerR; cobalamin B12-binding domain protein; SMART: regulatory protein MerR; KEGG: ajs:Ajs_2972 MerR family transcriptional regulator
YP_002553837.1	PFAM: Lipocalin family protein; KEGG: ajs:Ajs_2973 lipocalin family protein
YP_002553838.1	KEGG: ajs:Ajs_2974 hypothetical protein
YP_002553840.1	KEGG: ajs:Ajs_2975 hypothetical protein
YP_002553841.1	PFAM: LrgA family protein; KEGG: ajs:Ajs_2976 LrgA family protein
YP_002553842.1	PFAM: LrgB family protein; KEGG: ajs:Ajs_2977 LrgB family protein
YP_002553843.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator
YP_002553844.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2979 acyl-CoA dehydrogenase domain-containing protein
YP_002553845.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_2980 L-carnitine dehydratase/bile acid-inducible protein F
YP_002553846.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2981 hypothetical protein
YP_002553847.1	KEGG: ajs:Ajs_2984 hypothetical protein
YP_002553848.1	KEGG: ajs:Ajs_2985 hypothetical protein
YP_002553849.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase
YP_002553850.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_002553851.1	KEGG: ajs:Ajs_2988 hypothetical protein
YP_002553852.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_2989 hypothetical protein
YP_002553853.1	KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_002553854.1	KEGG: ajs:Ajs_2991 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region
YP_002553855.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: ajs:Ajs_2992 HAD family hydrolase
YP_002553856.1	TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: ajs:Ajs_2993 chromosomal replication initiator, DnaA
YP_002553857.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002553858.1	KEGG: ajs:Ajs_2995 hypothetical protein
YP_002553859.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_2996 UspA domain-containing protein
YP_002553860.1	PFAM: protein of unknown function DUF344; KEGG: ajs:Ajs_2997 hypothetical protein
YP_002553861.1	KEGG: ajs:Ajs_2998 hypothetical protein
YP_002553862.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: ajs:Ajs_2999 integral membrane protein MviN
YP_002553863.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002553864.1	KEGG: ajs:Ajs_3001 hypothetical protein
YP_002553865.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_002553866.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002553868.1	PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein
YP_002553869.1	KEGG: ajs:Ajs_3005 hypothetical protein
YP_002553870.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B
YP_002553871.1	PFAM: FeoA family protein; KEGG: aav:Aave_1160 FeoA family protein
YP_002553872.1	PFAM: protein of unknown function UPF0153; KEGG: dac:Daci_2174 hypothetical protein
YP_002553873.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: aav:Aave_1158 transcriptional regulator, AsnC family
YP_002553874.1	TIGRFAM: arylformamidase; PFAM: cyclase family protein; KEGG: aav:Aave_1157 cyclase family protein
YP_002553875.1	TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: dac:Daci_2164 kynureninase
YP_002553876.1	TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: aav:Aave_1155 tryptophan 2,3-dioxygenase
YP_002553877.1	PFAM: peptidase S45 penicillin amidase; KEGG: aav:Aave_1140 peptidase S45, penicillin amidase
YP_002553878.1	catalyzes the formation of inosine from adenosine
YP_002553879.1	PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein
YP_002553880.1	PFAM: basic membrane lipoprotein; KEGG: dac:Daci_2138 basic membrane lipoprotein
YP_002553881.1	PFAM: inner-membrane translocator; KEGG: dac:Daci_2137 inner-membrane translocator
YP_002553882.1	PFAM: inner-membrane translocator; KEGG: aav:Aave_1133 inner-membrane translocator
YP_002553883.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3101 ABC transporter related
YP_002553884.1	TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: ajs:Ajs_3102 molybdopterin dehydrogenase, FAD-binding
YP_002553885.1	KEGG: ajs:Ajs_3103 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
YP_002553886.1	KEGG: ajs:Ajs_3104 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; GGDEF domain containing protein
YP_002553887.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: ajs:Ajs_3105 Crp/FNR family transcriptional regulator
YP_002553888.1	PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type
YP_002553889.1	PFAM: GGDEF domain containing protein; EAL domain protein; SMART: GGDEF domain containing protein; EAL domain protein; KEGG: ajs:Ajs_3107 diguanylate cyclase/phosphodiesterase
YP_002553890.1	PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_3108 histidine triad (HIT) protein
YP_002553891.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_3109 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002553892.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter
YP_002553893.1	KEGG: ajs:Ajs_3111 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_002553894.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3112 ABC transporter related
YP_002553895.1	PFAM: heat shock protein Hsp20; KEGG: ajs:Ajs_3113 heat shock protein HSP20
YP_002553896.1	PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3114 hypothetical protein
YP_002553897.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_002553898.1	KEGG: ajs:Ajs_3116 secreted hydrolase-like protein
YP_002553899.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3117 inner-membrane translocator
YP_002553900.1	PFAM: inner-membrane translocator; KEGG: aav:Aave_1284 inner-membrane translocator
YP_002553901.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor
YP_002553902.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3120 putative substrate-binding periplasmic (pbp) ABC transporter protein
YP_002553903.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3121 ABC transporter related
YP_002553904.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3122 ABC transporter related
YP_002553905.1	PFAM: regulatory protein LysR; TOBE domain protein; KEGG: ajs:Ajs_3123 ModE family transcriptional regulator
YP_002553906.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3124 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_002553907.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit
YP_002553908.1	KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_002553909.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: she:Shewmr4_0667 hypothetical protein
YP_002553910.1	PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein
YP_002553911.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3128 ABC transporter related
YP_002553912.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component
YP_002553913.1	PFAM: regulatory protein LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator
YP_002553914.1	PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ajs:Ajs_3131 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_002553915.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_3132 tripartite ATP-independent periplasmic transporter DctQ
YP_002553916.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_3133 TRAP dicarboxylate transporter-DctP subunit
YP_002553917.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: ajs:Ajs_3134 delta1-piperideine 2-carboxylate reductase
YP_002553918.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3135 Bcr/CflA subfamily drug resistance transporter
YP_002553919.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3136 AMP-dependent synthetase and ligase
YP_002553920.1	KEGG: ajs:Ajs_3137 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: zinc finger CHC2-family protein; Toprim sub domain protein
YP_002553921.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: ajs:Ajs_3138 RpoD family RNA polymerase sigma factor
YP_002553922.1	TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase
YP_002553923.1	KEGG: ajs:Ajs_3140 putative protein-S-isoprenylcysteine methyltransferase-like protein
YP_002553924.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3141 hypothetical protein
YP_002553925.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F
YP_002553926.1	PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3143 hydroxymethylglutaryl-CoA lyase
YP_002553927.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator
YP_002553928.1	KEGG: ajs:Ajs_3145 putative transcriptional regulator
YP_002553929.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ajs:Ajs_3146 peptidylprolyl isomerase
YP_002553930.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_002553931.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: ajs:Ajs_3148 polyhydroxyalkonate synthesis repressor, PhaR
YP_002553932.1	KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_002553933.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold
YP_002553934.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_002553935.1	PFAM: protein of unknown function DUF541; KEGG: ajs:Ajs_3152 hypothetical protein
YP_002553936.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_002553937.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_3154 integral membrane sensor signal transduction histidine kinase
YP_002553938.1	KEGG: ajs:Ajs_3155 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_002553939.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ajs:Ajs_3156 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_002553940.1	KEGG: ajs:Ajs_3157 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases
YP_002553941.1	KEGG: ajs:Ajs_3158 hypothetical protein
YP_002553942.1	KEGG: ajs:Ajs_3159 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3
YP_002553943.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_3160 YaeC family lipoprotein
YP_002553944.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3161 lysine exporter protein LysE/YggA
YP_002553945.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_002553946.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_3163 BadM/Rrf2 family transcriptional regulator
YP_002553947.1	TIGRFAM: Hemerythrin HHE cation binding domain protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: ajs:Ajs_3164 hypothetical protein
YP_002553948.1	KEGG: ajs:Ajs_3165 hypothetical protein
YP_002553949.1	KEGG: ajs:Ajs_3166 hypothetical protein
YP_002553950.1	PFAM: aldo/keto reductase; KEGG: ajs:Ajs_3167 aldo/keto reductase
YP_002553951.1	PFAM: SlyX family protein; KEGG: ajs:Ajs_3168 SlyX family protein
YP_002553952.1	PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3169 GntR family transcriptional regulator
YP_002553953.1	KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; Endonuclease III/Nth; SMART: HhH-GPD family protein; iron-sulfur cluster loop
YP_002553954.1	KEGG: ajs:Ajs_3171 hypothetical protein
YP_002553955.1	KEGG: ajs:Ajs_3172 hypothetical protein
YP_002553956.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4707 transposase IS3/IS911 family protein
YP_002553957.1	PFAM: IS66 Orf2 family protein; KEGG: aav:Aave_0711 IS66 Orf2 family protein
YP_002553958.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_002553959.1	PFAM: General secretory system II protein E domain protein; KEGG: ecg:E2348_C_0469 bacteriophage N4 receptor, inner membrane subunit NfrB
YP_002553960.1	KEGG: rpi:Rpic_2762 ISXo7 transposase
YP_002553961.1	KEGG: syn:slr0624 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase
YP_002553962.1	KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
YP_002553963.1	TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: ajs:Ajs_3177 cob(II)yrinic acid a,c-diamide reductase
YP_002553964.1	TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing)
YP_002553965.1	KEGG: aav:Aave_1550 hypothetical protein
YP_002553966.1	KEGG: aav:Aave_1549 hypothetical protein
YP_002553967.1	PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3179 aminotransferase
YP_002553968.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase
YP_002553969.1	KEGG: dac:Daci_5193 N-terminal methylation site-containing protein
YP_002553970.1	KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein
YP_002553971.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV
YP_002553972.1	KEGG: ajs:Ajs_3186 hypothetical protein
YP_002553973.1	KEGG: ajs:Ajs_3187 hypothetical protein
YP_002553974.1	KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1
YP_002553975.1	KEGG: dac:Daci_5198 fimbrial protein pilin
YP_002553976.1	PFAM: protein of unknown function DUF820; KEGG: ana:all1618 hypothetical protein
YP_002553977.1	KEGG: ajs:Ajs_3190 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein
YP_002553978.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3191 phospholipase D/transphosphatidylase
YP_002553979.1	PFAM: dihydrouridine synthase DuS; KEGG: ajs:Ajs_3192 dihydrouridine synthase, DuS
YP_002553980.1	PFAM: methyltransferase small; KEGG: ajs:Ajs_3193 methyltransferase small
YP_002553981.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3194 GCN5-related N-acetyltransferase
YP_002553982.1	PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_3195 aldehyde dehydrogenase
YP_002553983.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ajs:Ajs_3196 glutathione-dependent formaldehyde-activating, GFA
YP_002553984.1	KEGG: ajs:Ajs_3197 hypothetical protein
YP_002553985.1	KEGG: ajs:Ajs_3198 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent chaperone ClpB; SMART: AAA ATPase
YP_002553986.1	PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE
YP_002553987.1	KEGG: ajs:Ajs_3200 hypothetical protein
YP_002553989.1	KEGG: ajs:Ajs_3201 hypothetical protein
YP_002553990.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: ajs:Ajs_3202 molybdopterin synthase subunit MoaD
YP_002553991.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein
YP_002553992.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: ajs:Ajs_3204 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_002553993.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002553994.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002553995.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_002553996.1	PFAM: protein of unknown function DUF498; KEGG: ajs:Ajs_3208 hypothetical protein
YP_002553997.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_3209 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_002553998.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: ajs:Ajs_3210 PhoH family protein
YP_002553999.1	KEGG: ajs:Ajs_3211 hypothetical protein
YP_002554000.1	KEGG: ajs:Ajs_3212 primary replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase
YP_002554001.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002554002.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002554003.1	KEGG: ajs:Ajs_3215 putative primosomal replication protein
YP_002554004.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002554005.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002554006.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002554007.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002554008.1	PFAM: peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32
YP_002554009.1	PFAM: peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32
YP_002554010.1	PFAM: Sterol-binding domain protein; KEGG: ajs:Ajs_3222 hypothetical protein
YP_002554011.1	PFAM: DGC domain protein; KEGG: ajs:Ajs_3223 hypothetical protein
YP_002554012.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: ajs:Ajs_3224 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_002554013.1	TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase
YP_002554014.1	PFAM: cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450
YP_002554015.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ajs:Ajs_3227 beta-lactamase domain-containing protein
YP_002554016.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3228 LysR family transcriptional regulator
YP_002554017.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_002554018.1	PFAM: Entericidin EcnAB; KEGG: ajs:Ajs_3230 entericidin EcnAB
YP_002554019.1	KEGG: ajs:Ajs_3231 hypothetical protein
YP_002554020.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_002554021.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002554022.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_3234 short chain dehydrogenase
YP_002554023.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002554024.1	KEGG: ajs:Ajs_3236 putative transmembrane protein
YP_002554025.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002554026.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase
YP_002554027.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002554028.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002554029.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
YP_002554030.1	PFAM: protein of unknown function YGGT; KEGG: ajs:Ajs_3242 protein of unknown function YGGT
YP_002554031.1	PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: ajs:Ajs_3243 peptidase S16, lon domain-containing protein
YP_002554032.1	PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_3244 glycosyl transferase, group 1
YP_002554033.1	TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: ajs:Ajs_3245 sugar transferase
YP_002554034.1	KEGG: ajs:Ajs_3246 hypothetical protein
YP_002554035.1	PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_3247 glycosyl transferase, group 1
YP_002554036.1	KEGG: ajs:Ajs_3248 putative glycosyltransferase
YP_002554037.1	KEGG: ajs:Ajs_3249 hypothetical protein
YP_002554038.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002554039.1	KEGG: ajs:Ajs_3251 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver
YP_002554040.1	KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein
YP_002554041.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3253 extracellular ligand-binding receptor
YP_002554042.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3254 inner-membrane translocator
YP_002554043.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_002554044.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_002554045.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3257 ABC transporter related
YP_002554046.1	KEGG: ajs:Ajs_3258 hypothetical protein
YP_002554047.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_3259 alkylhydroperoxidase
YP_002554048.1	PFAM: phosphofructokinase; KEGG: ajs:Ajs_3260 6-phosphofructokinase
YP_002554049.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: ajs:Ajs_3261 beta-N-acetylhexosaminidase
YP_002554050.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002554051.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_002554052.1	KEGG: ajs:Ajs_3264 hypothetical protein
YP_002554053.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: ajs:Ajs_3265 DNA repair protein RecO
YP_002554054.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: ajs:Ajs_3266 GTP-binding protein Era
YP_002554055.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002554056.1	KEGG: ajs:Ajs_3268 putative transmembrane protein
YP_002554057.1	KEGG: ajs:Ajs_3269 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_002554058.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002554059.1	KEGG: ajs:Ajs_3271 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_002554060.1	PFAM: MucB/RseB family protein; KEGG: ajs:Ajs_3272 sigma E regulatory protein, MucB/RseB
YP_002554061.1	PFAM: Anti sigma-E protein RseA family protein; KEGG: ajs:Ajs_3273 anti sigma-E protein, RseA
YP_002554062.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_002554063.1	KEGG: ajs:Ajs_3275 hypothetical protein
YP_002554064.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: ajs:Ajs_3276 3-oxoacyl-[acyl-carrier-protein] synthase II
YP_002554065.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002554066.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_3278 3-oxoacyl-[acyl-carrier-protein] reductase
YP_002554067.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase
YP_002554068.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002554069.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002554070.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002554071.1	PFAM: protein of unknown function DUF177; KEGG: ajs:Ajs_3283 hypothetical protein
YP_002554072.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ajs:Ajs_3284 maf protein
YP_002554073.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ajs:Ajs_3285 uroporphyrin-III C/tetrapyrrole methyltransferase
YP_002554074.1	PFAM: peptidase S49; KEGG: ajs:Ajs_3286 peptidase S49
YP_002554075.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_3287 Rieske (2Fe-2S) domain-containing protein
YP_002554076.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_3288 HAD family hydrolase
YP_002554077.1	KEGG: dac:Daci_5281 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein
YP_002554078.1	KEGG: ajs:Ajs_3290 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; SMART: RNA binding S1 domain protein
YP_002554079.1	PFAM: protein of unknown function DUF328; KEGG: ajs:Ajs_3291 hypothetical protein
YP_002554080.1	KEGG: ajs:Ajs_3292 hypothetical protein
YP_002554081.1	KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit
YP_002554082.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_002554083.1	KEGG: ajs:Ajs_3295 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; chemotaxis sensory transducer
YP_002554084.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: vei:Veis_1647 DNA-directed DNA polymerase
YP_002554085.1	KEGG: ajs:Ajs_3297 hypothetical protein
YP_002554086.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase
YP_002554087.1	TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C
YP_002554088.1	KEGG: ajs:Ajs_3300 hypothetical protein
YP_002554089.1	PFAM: protein of unknown function DUF1232; KEGG: ajs:Ajs_3301 hypothetical protein
YP_002554090.1	KEGG: ajs:Ajs_3302 hypothetical protein
YP_002554091.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_3303 endonuclease/exonuclease/phosphatase
YP_002554092.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component
YP_002554093.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3305 binding-protein-dependent transport systems inner membrane component
YP_002554094.1	PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3306 extracellular solute-binding protein
YP_002554095.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3307 ABC transporter related
YP_002554096.1	PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: ajs:Ajs_3309 alpha-2-macroglobulin domain-containing protein
YP_002554097.1	PFAM: Catalase domain protein; KEGG: ajs:Ajs_3310 catalase
YP_002554098.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3311 hypothetical protein
YP_002554099.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002554100.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: ajs:Ajs_3313 histidine kinase internal region
YP_002554101.1	PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator
YP_002554102.1	PFAM: zinc/iron permease; KEGG: ajs:Ajs_3315 zinc/iron permease
YP_002554103.1	PFAM: dienelactone hydrolase; KEGG: ajs:Ajs_3316 carboxymethylenebutenolidase
YP_002554104.1	KEGG: ajs:Ajs_3317 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2
YP_002554105.1	KEGG: ajs:Ajs_3318 hypothetical protein
YP_002554106.1	KEGG: ajs:Ajs_3319 hypothetical protein
YP_002554107.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_002554108.1	KEGG: ajs:Ajs_3321 hypothetical protein
YP_002554109.1	PFAM: protein of unknown function DUF839; KEGG: abb:ABBFA_003071 Tat (twin-arginine translocation) pathway signal sequence domain protein
YP_002554110.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_3322 OmpA/MotB domain-containing protein
YP_002554111.1	KEGG: ajs:Ajs_3323 hypothetical protein
YP_002554112.1	PFAM: UvrD/REP helicase; KEGG: ajs:Ajs_3324 ATP-dependent DNA helicase UvrD
YP_002554113.1	KEGG: ajs:Ajs_3325 hypothetical protein
YP_002554114.1	TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: ajs:Ajs_3326 guanosine 5'-monophosphate oxidoreductase
YP_002554115.1	PFAM: NnrS family protein; KEGG: eba:ebA2112 hypothetical protein
YP_002554116.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA2113 ATPase component ABC-type transport system
YP_002554117.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA2114 putative ABC transporter, permease protein
YP_002554118.1	KEGG: neu:NE0632 hypothetical protein
YP_002554119.1	KEGG: pap:PSPA7_3362 hypothetical protein
YP_002554120.1	PFAM: CobN/magnesium chelatase; KEGG: neu:NE0757 cobaltochelatase
YP_002554121.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_39650 putative TonB-dependent receptor
YP_002554122.1	KEGG: eba:ebA2115 putative periplasmic component of ABC-type transport system
YP_002554123.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pde:Pden_4173 TonB-dependent receptor
YP_002554124.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_3341 Crp/FNR family transcriptional regulator
YP_002554125.1	KEGG: ajs:Ajs_3342 hypothetical protein
YP_002554126.1	PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 hypothetical protein
YP_002554127.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter
YP_002554128.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: ajs:Ajs_3345 DEAD/DEAH box helicase domain-containing protein
YP_002554129.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_002554130.1	PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_3347 STE24 endopeptidase
YP_002554131.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: ajs:Ajs_3348 pterin-4-alpha-carbinolamine dehydratase
YP_002554132.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: ajs:Ajs_3349 ribosome small subunit-dependent GTPase A
YP_002554133.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: ajs:Ajs_3350 cobalamin biosynthesis protein CbiB
YP_002554134.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase
YP_002554135.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002554136.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002554137.1	Essential for efficient processing of 16S rRNA
YP_002554138.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002554139.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3356 GCN5-related N-acetyltransferase
YP_002554140.1	KEGG: ajs:Ajs_3357 hypothetical protein
YP_002554141.1	PFAM: phosphate transporter; KEGG: ajs:Ajs_3358 phosphate transporter
YP_002554142.1	PFAM: protein of unknown function DUF47; KEGG: ajs:Ajs_3359 hypothetical protein
YP_002554143.1	PFAM: protein of unknown function DUF486; KEGG: ajs:Ajs_3360 hypothetical protein
YP_002554144.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3361 ABC transporter related
YP_002554145.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3362 ABC transporter related
YP_002554146.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3363 inner-membrane translocator
YP_002554147.1	PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3364 inner-membrane translocator
YP_002554148.1	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_3365 recombination factor protein RarA
YP_002554149.1	TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: ajs:Ajs_3366 integron integrase
YP_002554150.1	PFAM: protein of unknown function DUF1010; KEGG: ajs:Ajs_3982 hypothetical protein
YP_002554151.1	KEGG: ajs:Ajs_3379 hypothetical protein
YP_002554152.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: ajs:Ajs_3380 uracil-DNA glycosylase superfamily protein
YP_002554153.1	TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA
YP_002554154.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: ajs:Ajs_3382 DNA translocase FtsK
YP_002554155.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3383 thioredoxin reductase
YP_002554156.1	required for 70S ribosome assembly
YP_002554157.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002554158.1	PFAM: fatty acid desaturase; KEGG: ajs:Ajs_3386 fatty acid desaturase
YP_002554159.1	PFAM: Fmu (Sun) domain protein; KEGG: ajs:Ajs_3387 Fmu (Sun) domain-containing protein
YP_002554160.1	PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_3388 peptidase M48, Ste24p
YP_002554161.1	PFAM: protein of unknown function DUF1653; KEGG: ajs:Ajs_3389 hypothetical protein
YP_002554162.1	KEGG: ajs:Ajs_3390 hypothetical protein
YP_002554163.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002554164.1	PFAM: protein of unknown function DUF480; KEGG: ajs:Ajs_3392 hypothetical protein
YP_002554165.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_3393 acyl-CoA dehydrogenase domain-containing protein
YP_002554166.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3394 acyl-CoA dehydrogenase domain-containing protein
YP_002554167.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ajs:Ajs_3397 HNH endonuclease
YP_002554168.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002554169.1	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: ajs:Ajs_3399 isoleucyl-tRNA synthetase
YP_002554170.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002554171.1	TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: ajs:Ajs_3401 Na/Pi-cotransporter II-related protein
YP_002554172.1	KEGG: ajs:Ajs_3402 hypothetical protein
YP_002554173.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3404 NUDIX hydrolase
YP_002554174.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aav:Aave_3468 alcohol dehydrogenase, zinc-binding domain protein
YP_002554175.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_3406 hypothetical protein
YP_002554176.1	KEGG: aav:Aave_3487 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: GGDEF domain containing protein; EAL domain protein
YP_002554177.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit
YP_002554178.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1080 short-chain dehydrogenase/reductase SDR
YP_002554179.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein
YP_002554180.1	PFAM: protein of unknown function DUF1468; KEGG: ajs:Ajs_3412 hypothetical protein
YP_002554181.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3413 type II secretion system protein E
YP_002554182.1	KEGG: ajs:Ajs_3414 hypothetical protein
YP_002554183.1	KEGG: ajs:Ajs_3415 hypothetical protein
YP_002554184.1	PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease
YP_002554185.1	KEGG: ajs:Ajs_3417 hypothetical protein
YP_002554186.1	PFAM: regulatory protein MarR; regulatory protein ArsR; transcriptional regulator TrmB; SMART: regulatory protein ArsR; KEGG: ajs:Ajs_3418 ArsR family transcriptional regulator
YP_002554187.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_3419 alkylhydroperoxidase
YP_002554188.1	KEGG: ajs:Ajs_3420 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002554189.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3421 LolC/E family lipoprotein releasing system, transmembrane protein
YP_002554190.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ajs:Ajs_3422 glycerophosphoryl diester phosphodiesterase
YP_002554191.1	KEGG: ajs:Ajs_3423 hypothetical protein
YP_002554192.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ
YP_002554193.1	PFAM: Curli production assembly/transport component CsgG; KEGG: dac:Daci_5407 curli production assembly/transport component CsgG
YP_002554194.1	KEGG: ajs:Ajs_3428 hypothetical protein
YP_002554195.1	PFAM: protein of unknown function DUF799; KEGG: ajs:Ajs_3429 hypothetical protein
YP_002554196.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer
YP_002554197.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ajs:Ajs_3431 phosphotransferase domain-containing protein
YP_002554198.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: ajs:Ajs_3432 SUA5/YciO/YrdC/YwlC family protein
YP_002554199.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: ajs:Ajs_3433 von Willebrand factor, type A
YP_002554200.1	PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: ajs:Ajs_3434 ATPase
YP_002554201.1	KEGG: ajs:Ajs_3435 cytochrome c oxidase, subunit I
YP_002554202.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_3436 cytochrome c, class I
YP_002554204.1	PFAM: peptidase M50; KEGG: ajs:Ajs_3437 peptidase M50
YP_002554205.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002554206.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002554207.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ajs:Ajs_3446 signal transduction protein
YP_002554208.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ajs:Ajs_3447 hypothetical protein
YP_002554209.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002554210.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: aav:Aave_3772 peptidylprolyl isomerase, FKBP-type
YP_002554211.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002554212.1	KEGG: ajs:Ajs_3451 hypothetical protein
YP_002554213.1	PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: ajs:Ajs_3452 Smr protein/MutS2
YP_002554214.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ajs:Ajs_3453 5'-nucleotidase domain-containing protein
YP_002554215.1	PFAM: globin; KEGG: ajs:Ajs_3454 globin
YP_002554216.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: ajs:Ajs_3455 TraR/DksA family transcriptional regulator
YP_002554217.1	KEGG: ajs:Ajs_3456 hypothetical protein
YP_002554218.1	KEGG: ajs:Ajs_3457 hypothetical protein
YP_002554219.1	PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3458 hypothetical protein
YP_002554220.1	PFAM: formate dehydrogenase subunit FdhD; KEGG: ajs:Ajs_3459 formate dehydrogenase, subunit FdhD
YP_002554221.1	KEGG: ajs:Ajs_3460 hypothetical protein
YP_002554222.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit
YP_002554223.1	KEGG: ajs:Ajs_3462 putative lipoprotein
YP_002554224.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_3463 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002554225.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ajs:Ajs_3464 molybdopterin oxidoreductase
YP_002554226.1	TIGRFAM: formate dehydrogenase region TAT target; KEGG: pol:Bpro_0936 twin-arginine translocation pathway signal
YP_002554227.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: ajs:Ajs_3466 cytoplasmic chaperone TorD family protein
YP_002554228.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002554229.1	KEGG: ajs:Ajs_3468 hypothetical protein
YP_002554230.1	KEGG: ajs:Ajs_3469 hypothetical protein
YP_002554231.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ajs:Ajs_3470 formate dehydrogenase, alpha subunit
YP_002554232.1	PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ajs:Ajs_3471 NADH dehydrogenase (quinone)
YP_002554233.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: azo:azo1390 probable phosphate-binding periplasmic protein
YP_002554234.1	PFAM: protein of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein
YP_002554235.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: ajs:Ajs_3478 C4-dicarboxylate transporter/malic acid transport protein
YP_002554236.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: ajs:Ajs_3479 selenophosphate synthase
YP_002554237.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_002554238.1	PFAM: restriction endonuclease; KEGG: ajs:Ajs_3481 restriction endonuclease
YP_002554239.1	PFAM: Patatin; KEGG: aav:Aave_3832 patatin
YP_002554240.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002554241.1	KEGG: ajs:Ajs_3484 hypothetical protein
YP_002554242.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_3485 AraC family transcriptional regulator
YP_002554243.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_3486 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
YP_002554244.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase
YP_002554245.1	thiamine-pyrophosphate requiring enzyme
YP_002554246.1	PFAM: protein of unknown function DUF161; KEGG: ajs:Ajs_3489 hypothetical protein
YP_002554247.1	KEGG: ajs:Ajs_3490 putative lipoprotein
YP_002554248.1	KEGG: ajs:Ajs_3491 hypothetical protein
YP_002554249.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA
YP_002554250.1	KEGG: ajs:Ajs_3493 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase
YP_002554251.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_002554252.1	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: ajs:Ajs_3495 5-carboxymethyl-2-hydroxymuconate isomerase
YP_002554253.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: aminotransferase class IV; Chorismate binding-like; KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I
YP_002554254.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002554255.1	KEGG: ajs:Ajs_3498 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_002554256.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002554257.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002554258.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002554259.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_002554260.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: ajs:Ajs_3503 glutaredoxin 3
YP_002554261.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: ajs:Ajs_3504 rhodanese domain-containing protein
YP_002554262.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002554263.1	KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; SMART: PDZ/DHR/GLGF domain protein; peptidase S41
YP_002554264.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein
YP_002554265.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_3508 response regulator receiver protein
YP_002554266.1	PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_3509 two component LuxR family transcriptional regulator
YP_002554267.1	PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase
YP_002554268.1	PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 hypothetical protein
YP_002554269.1	KEGG: ajs:Ajs_3512 hypothetical protein
YP_002554270.1	PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: ajs:Ajs_3513 ferritin, Dps family protein
YP_002554271.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ajs:Ajs_3514 transport-associated
YP_002554272.1	KEGG: ajs:Ajs_3515 hypothetical protein
YP_002554273.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002554274.1	TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: ajs:Ajs_3517 putative methyltransferase
YP_002554275.1	PFAM: peptidase M16 domain protein; KEGG: ajs:Ajs_3518 peptidase M16 domain-containing protein
YP_002554276.1	PFAM: peptidase M16 domain protein; KEGG: ajs:Ajs_3519 peptidase M16 domain-containing protein
YP_002554277.1	KEGG: ajs:Ajs_3520 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_002554278.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: ajs:Ajs_3521 CutA1 divalent ion tolerance protein
YP_002554279.1	TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ajs:Ajs_3522 RNA polymerase, sigma 32 subunit, RpoH
YP_002554280.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3523 hypothetical protein
YP_002554281.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: ajs:Ajs_3524 cyclic nucleotide-binding protein
YP_002554282.1	KEGG: ajs:Ajs_3525 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; EAL domain protein
YP_002554283.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: ajs:Ajs_3526 electron transport protein SCO1/SenC
YP_002554284.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002554285.1	PFAM: cytochrome oxidase assembly; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly
YP_002554286.1	KEGG: ajs:Ajs_3529 hypothetical protein
YP_002554287.1	KEGG: ajs:Ajs_3530 putative transmembrane cytochrome oxidase
YP_002554288.1	KEGG: ajs:Ajs_3531 putative transmembrane protein
YP_002554289.1	PFAM: cytochrome c oxidase subunit III; KEGG: ajs:Ajs_3532 cytochrome c oxidase, subunit III
YP_002554290.1	KEGG: ajs:Ajs_3533 hypothetical protein
YP_002554291.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_002554292.1	KEGG: ajs:Ajs_3535 hypothetical protein
YP_002554293.1	KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002554294.1	TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: ajs:Ajs_3537 cytochrome c oxidase, subunit II
YP_002554295.1	KEGG: ajs:Ajs_3538 hypothetical protein
YP_002554296.1	KEGG: ajs:Ajs_3539 biotin synthesis protein BioC
YP_002554297.1	PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein
YP_002554298.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ajs:Ajs_3541 tRNA/rRNA methyltransferase (SpoU)
YP_002554299.1	PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_3542 dehydratase
YP_002554300.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_3543 cobyrinic acid a,c-diamide synthase
YP_002554301.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA
YP_002554302.1	transport system that facilitates potassium-efflux
YP_002554303.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 hypothetical protein
YP_002554304.1	KEGG: ajs:Ajs_3547 3-oxoadipate enol-lactonase; TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold
YP_002554305.1	KEGG: ajs:Ajs_3548 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase
YP_002554306.1	KEGG: ajs:Ajs_3549 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_002554307.1	KEGG: ajs:Ajs_3550 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_002554308.1	KEGG: ajs:Ajs_3551 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR
YP_002554309.1	KEGG: pna:Pnap_0863 hypothetical protein
YP_002554310.1	PFAM: Domain of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein
YP_002554311.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_3554 UspA domain-containing protein
YP_002554312.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_3555 cytochrome c, class I
YP_002554313.1	PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_3556 ATPase central domain-containing protein
YP_002554314.1	KEGG: ajs:Ajs_3557 hypothetical protein
YP_002554315.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3558 GCN5-related N-acetyltransferase
YP_002554316.1	KEGG: ajs:Ajs_3559 hypothetical protein
YP_002554317.1	PFAM: surface antigen (D15); KEGG: ajs:Ajs_3560 surface antigen (D15)
YP_002554318.1	PFAM: protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein
YP_002554319.1	KEGG: ajs:Ajs_3562 hypothetical protein
YP_002554320.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3563 cardiolipin synthetase 2
YP_002554321.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: ajs:Ajs_3564 arsenate reductase
YP_002554322.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component
YP_002554323.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3566 ABC transporter related
YP_002554324.1	PFAM: protein of unknown function DUF1282; KEGG: ajs:Ajs_3567 hypothetical protein
YP_002554325.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ajs:Ajs_3568 lyso-ornithine lipid acyltransferase
YP_002554326.1	PFAM: amidohydrolase; KEGG: ajs:Ajs_3569 dihydroorotase
YP_002554327.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002554328.1	PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_3571 phosphoribosyltransferase
YP_002554329.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002554330.1	PFAM: protein of unknown function DUF179; KEGG: ajs:Ajs_3573 hypothetical protein
YP_002554331.1	PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ajs:Ajs_3574 CheA signal transduction histidine kinases
YP_002554332.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: ajs:Ajs_3575 methyl-accepting chemotaxis sensory transducer
YP_002554333.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein
YP_002554334.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_3577 response regulator receiver protein
YP_002554335.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_3578 response regulator receiver protein
YP_002554336.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: ajs:Ajs_3579 rubredoxin-type Fe(Cys)4 protein
YP_002554337.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ajs:Ajs_3580 phosphomethylpyrimidine kinase type-1
YP_002554338.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002554339.1	KEGG: ajs:Ajs_3582 alkaline phosphatase
YP_002554340.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_3583 cytochrome c, class I
YP_002554341.1	involved in de novo purine biosynthesis
YP_002554342.1	PFAM: helix-turn-helix Fis-type; KEGG: ajs:Ajs_3585 DNA-binding protein fis
YP_002554343.1	TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: ajs:Ajs_3586 nifR3 family TIM-barrel protein
YP_002554344.1	KEGG: ajs:Ajs_3587 hypothetical protein
YP_002554345.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2834 LysR family transcriptional regulator
YP_002554346.1	PFAM: conserved hypothetical protein; KEGG: dac:Daci_2833 hypothetical protein
YP_002554347.1	TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; KEGG: dac:Daci_2832 amidohydrolase
YP_002554348.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2966 phosphonate ABC transporter, inner membrane subunit
YP_002554349.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate binding protein; KEGG: vei:Veis_2965 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_002554350.1	KEGG: vei:Veis_2964 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002554351.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: vei:Veis_2963 phosphonate metabolism protein PhnM
YP_002554352.1	KEGG: vei:Veis_2962 phosphonate C-P lyase system protein PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002554353.1	KEGG: vei:Veis_2961 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002554354.1	PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_3396 GCN5-related N-acetyltransferase
YP_002554355.1	PFAM: phosphonate metabolism PhnJ; KEGG: vei:Veis_2960 phosphonate metabolism PhnJ
YP_002554356.1	PFAM: phosphonate metabolism; KEGG: vei:Veis_2959 phosphonate metabolism
YP_002554357.1	TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: vei:Veis_2958 phosphonate metabolism
YP_002554358.1	TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: vei:Veis_2957 putative phosphonate metabolism PhnG protein
YP_002554359.1	KEGG: reh:H16_B1289 regulator of phosphonate operon, GntR-family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH
YP_002554360.1	PFAM: protein of unknown function DUF1045; KEGG: vei:Veis_2956 protein of unknown function DUF1045
YP_002554361.1	TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: vei:Veis_2955 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
YP_002554362.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: ajs:Ajs_3618 GTP-binding protein YchF
YP_002554363.1	PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: ajs:Ajs_3619 MOSC domain-containing protein
YP_002554364.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
YP_002554365.1	PFAM: Thioredoxin, conserved site; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC
YP_002554366.1	PFAM: peptidase M61 domain protein; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein
YP_002554367.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 short chain enoyl-CoA hydratase
YP_002554368.1	KEGG: ajs:Ajs_3624 hypothetical protein
YP_002554369.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002554370.1	KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_002554371.1	PFAM: cytochrome c assembly protein; KEGG: ajs:Ajs_3627 cytochrome c assembly protein
YP_002554372.1	KEGG: ajs:Ajs_3628 hypothetical protein
YP_002554373.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_3629 integral membrane sensor signal transduction histidine kinase
YP_002554374.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: ajs:Ajs_3630 two component, sigma54 specific, fis family transcriptional regulator
YP_002554375.1	PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: ajs:Ajs_3631 N-acetyl-anhydromuranmyl-L-alanine amidase
YP_002554376.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002554377.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002554378.1	KEGG: ajs:Ajs_3634 histone protein
YP_002554379.1	PFAM: PfkB domain protein; KEGG: ajs:Ajs_3635 ribokinase-like domain-containing protein
YP_002554380.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: ajs:Ajs_3636 zinc finger-domain-containing protein
YP_002554381.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002554382.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase
YP_002554383.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ajs:Ajs_3639 biotin carboxyl carrier protein
YP_002554384.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ajs:Ajs_3640 redoxin domain-containing protein
YP_002554385.1	KEGG: ajs:Ajs_3641 hypothetical protein
YP_002554386.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate
YP_002554387.1	KEGG: ajs:Ajs_3643 hypothetical protein
YP_002554388.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_002554389.1	KEGG: ajs:Ajs_3645 hypothetical protein
YP_002554390.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ajs:Ajs_3646 microcin-processing peptidase 2
YP_002554391.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: ajs:Ajs_3647 rod shape-determining protein RodA
YP_002554392.1	PFAM: protein of unknown function UPF0227; KEGG: ajs:Ajs_3649 hypothetical protein
YP_002554393.1	PFAM: O-antigen polymerase; KEGG: ajs:Ajs_3650 O-antigen polymerase
YP_002554394.1	PFAM: cytochrome c class I; KEGG: ajs:Ajs_3651 cytochrome c, class I
YP_002554395.1	KEGG: ajs:Ajs_3652 hypothetical protein
YP_002554396.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_3653 ECF subfamily RNA polymerase sigma-24 factor
YP_002554397.1	PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II
YP_002554398.1	TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein
YP_002554399.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002554400.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase
YP_002554401.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_002554402.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_3659 methyl-accepting chemotaxis sensory transducer
YP_002554403.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_3660 methyl-accepting chemotaxis sensory transducer
YP_002554404.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002554405.1	KEGG: ajs:Ajs_3662 hypothetical protein
YP_002554406.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_002554407.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: ajs:Ajs_3664 methyl-accepting chemotaxis sensory transducer
YP_002554408.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: ajs:Ajs_3665 cell division protein FtsZ
YP_002554409.1	TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: ajs:Ajs_3666 cell division protein FtsA
YP_002554410.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: ajs:Ajs_3667 polypeptide-transport-associated domain-containing protein
YP_002554411.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002554412.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002554413.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002554414.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: ajs:Ajs_3671 cell division protein FtsW
YP_002554415.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002554416.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002554417.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_002554418.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002554419.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ajs:Ajs_3676 peptidoglycan synthetase FtsI
YP_002554420.1	TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; KEGG: ajs:Ajs_3677 cell division protein FtsL
YP_002554421.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ajs:Ajs_3678 S-adenosyl-methyltransferase MraW
YP_002554422.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_002554423.1	heat shock protein involved in degradation of misfolded proteins
YP_002554424.1	heat shock protein involved in degradation of misfolded proteins
YP_002554425.1	KEGG: ajs:Ajs_3682 hypothetical protein
YP_002554426.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: ajs:Ajs_3683 TraR/DksA family transcriptional regulator
YP_002554427.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ajs:Ajs_3684 cobalamin synthesis protein, P47K
YP_002554428.1	KEGG: ajs:Ajs_3685 SAM-dependent methyltransferase
YP_002554429.1	TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ajs:Ajs_3686 tyrosine recombinase XerC
YP_002554430.1	PFAM: protein of unknown function DUF484; KEGG: ajs:Ajs_3687 hypothetical protein
YP_002554431.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002554432.1	KEGG: ajs:Ajs_3689 hypothetical protein
YP_002554433.1	KEGG: ajs:Ajs_3690 hypothetical protein
YP_002554434.1	PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: ajs:Ajs_3691 beta-lactamase domain-containing protein
YP_002554435.1	PFAM: RNA-binding S4 domain protein; KEGG: ajs:Ajs_3692 RNA-binding S4 domain-containing protein
YP_002554436.1	PFAM: protein of unknown function DUF898 transmembrane; KEGG: ajs:Ajs_3720 hypothetical protein
YP_002554437.1	PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_3721 peptidase M48, Ste24p
YP_002554438.1	KEGG: ajs:Ajs_3722 hypothetical protein
YP_002554439.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3723 cysteine synthase
YP_002554440.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_3724 endonuclease/exonuclease/phosphatase
YP_002554441.1	SMART: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3725 cardiolipin synthase 2
YP_002554442.1	KEGG: ajs:Ajs_3726 hypothetical protein
YP_002554443.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_3727 FAD dependent oxidoreductase
YP_002554444.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_3730 electron transfer flavoprotein, alpha subunit
YP_002554445.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_3731 electron transfer flavoprotein beta-subunit
YP_002554446.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD
YP_002554447.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3733 hypothetical protein
YP_002554448.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F
YP_002554449.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002554450.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3736 acyl-CoA dehydrogenase domain-containing protein
YP_002554451.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein
YP_002554452.1	KEGG: ajs:Ajs_3738 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002554453.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_002554454.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3740 LysR family transcriptional regulator
YP_002554455.1	KEGG: ajs:Ajs_3741 hypothetical protein
YP_002554456.1	putative metalloprotease
YP_002554457.1	KEGG: ajs:Ajs_3743 putative transmembrane protein
YP_002554458.1	PFAM: protein of unknown function DUF88; KEGG: ajs:Ajs_3744 hypothetical protein
YP_002554459.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002554460.1	KEGG: ajs:Ajs_3746 hypothetical protein
YP_002554461.1	KEGG: ajs:Ajs_3747 UvrA family protein; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002554462.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3748 extracellular ligand-binding receptor
YP_002554463.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3749 extracellular ligand-binding receptor
YP_002554464.1	KEGG: ajs:Ajs_3750 hypothetical protein
YP_002554465.1	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_3751 porin
YP_002554466.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3752 major facilitator superfamily transporter
YP_002554467.1	PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_3753 DsbA oxidoreductase
YP_002554468.1	PFAM: protein of unknown function DUF1289; KEGG: ajs:Ajs_3754 hypothetical protein
YP_002554469.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ajs:Ajs_3755 YbaK/prolyl-tRNA synthetase associated region
YP_002554470.1	KEGG: ajs:Ajs_3756 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; SMART: GGDEF domain containing protein
YP_002554471.1	PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase
YP_002554472.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_3758 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_002554473.1	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit
YP_002554474.1	KEGG: ajs:Ajs_3760 putative transmembrane protein
YP_002554475.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002554476.1	PFAM: DinB family protein; KEGG: ajs:Ajs_3762 DinB family protein
YP_002554477.1	PFAM: carboxyl transferase; KEGG: ajs:Ajs_3763 propionyl-CoA carboxylase
YP_002554478.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3764 acyl-CoA synthetase
YP_002554479.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ajs:Ajs_3765 AraC family transcriptional regulator
YP_002554480.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_0330 HAD family hydrolase
YP_002554481.1	KEGG: mpt:Mpe_A3496 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: GGDEF domain containing protein
YP_002554482.1	PFAM: extracellular solute-binding protein family 5; KEGG: aav:Aave_3619 extracellular solute-binding protein, family 5
YP_002554483.1	KEGG: dac:Daci_5982 hypothetical protein
YP_002554484.1	PFAM: protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein
YP_002554485.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein
YP_002554486.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3775 short chain dehydrogenase
YP_002554487.1	KEGG: ajs:Ajs_3776 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002554488.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_002554489.1	PFAM: carbonic anhydrase; KEGG: ajs:Ajs_3778 carbonate dehydratase
YP_002554490.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase
YP_002554491.1	PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: ajs:Ajs_3780 MerR family transcriptional regulator
YP_002554492.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3785 ABC transporter related
YP_002554493.1	KEGG: ajs:Ajs_3786 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver
YP_002554494.1	stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_002554495.1	KEGG: ajs:Ajs_3788 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type
YP_002554496.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ajs:Ajs_3789 CheW protein
YP_002554497.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases
YP_002554498.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_3791 response regulator receiver protein
YP_002554499.1	KEGG: ajs:Ajs_3792 hypothetical protein
YP_002554500.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase
YP_002554501.1	PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_3794 two component LuxR family transcriptional regulator
YP_002554502.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR
YP_002554503.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ
YP_002554504.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002554505.1	PFAM: flagellar biosynthesis protein FliO; KEGG: ajs:Ajs_3798 flagellar biosynthesis protein, FliO
YP_002554506.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: ajs:Ajs_3799 flagellar motor switch protein FliN
YP_002554507.1	TIGRFAM: flagellar motor switch protein FliM; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: ajs:Ajs_3800 flagellar motor switch protein FliM
YP_002554508.1	PFAM: flagellar basal body-associated protein FliL; KEGG: ajs:Ajs_3801 flagellar basal body-associated protein FliL
YP_002554509.1	PFAM: flagellar hook-length control protein; KEGG: ajs:Ajs_3802 flagellar hook-length control protein
YP_002554510.1	TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: ajs:Ajs_3803 flagellar export protein FliJ
YP_002554511.1	KEGG: ajs:Ajs_3804 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase
YP_002554512.1	PFAM: flagellar assembly protein FliH; KEGG: ajs:Ajs_3805 flagellar assembly protein FliH
YP_002554513.1	TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: ajs:Ajs_3806 flagellar motor switch protein FliG
YP_002554514.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: ajs:Ajs_3807 flagellar M-ring protein FliF
YP_002554515.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_3808 flagellar hook-basal body complex subunit FliE
YP_002554516.1	KEGG: ajs:Ajs_3809 flagellar protein FliT
YP_002554517.1	TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: aav:Aave_4398 flagellar protein FliS
YP_002554518.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain protein
YP_002554519.1	PFAM: flagellin domain protein; KEGG: vei:Veis_4397 flagellin domain protein
YP_002554520.1	PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: vei:Veis_4397 flagellin domain protein
YP_002554521.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3815 MotA/TolQ/ExbB proton channel
YP_002554522.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_3816 OmpA/MotB domain-containing protein
YP_002554523.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ajs:Ajs_3817 response regulator receiver protein
YP_002554524.1	PFAM: Chemotaxis phosphatase CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ
YP_002554525.1	PFAM: type III secretion exporter; KEGG: ajs:Ajs_3819 type III secretion exporter
YP_002554526.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: ajs:Ajs_3820 flagellar biosynthesis protein FlhA
YP_002554527.1	KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; TIGRFAM: AAA ATPase; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase
YP_002554528.1	KEGG: ajs:Ajs_3822 hypothetical protein
YP_002554529.1	KEGG: ajs:Ajs_3823 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2
YP_002554530.1	KEGG: ajs:Ajs_3824 hypothetical protein
YP_002554531.1	PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: ajs:Ajs_3825 anti-sigma-28 factor, FlgM
YP_002554532.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: ajs:Ajs_3826 SAF domain-containing protein
YP_002554533.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB
YP_002554534.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ajs:Ajs_3828 flagellar basal-body rod protein FlgC
YP_002554535.1	PFAM: flagellar hook capping protein; KEGG: ajs:Ajs_3829 flagellar hook capping protein
YP_002554536.1	TIGRFAM: flagellar basal body FlaE domain protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: ajs:Ajs_3830 hypothetical protein
YP_002554537.1	TIGRFAM: flagellar basal-body rod protein FlgF; flagellar basal-body rod FlgF family protein; PFAM: flagellar basal body rod protein; KEGG: ajs:Ajs_3831 flagellar basal-body rod protein FlgF
YP_002554538.1	TIGRFAM: flagellar basal-body rod protein FlgG; flagellar basal-body rod FlgG family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ajs:Ajs_3832 flagellar basal-body rod protein FlgG
YP_002554539.1	PFAM: flagellar L-ring protein; KEGG: ajs:Ajs_3833 flagellar L-ring protein
YP_002554540.1	KEGG: ajs:Ajs_3834 hypothetical protein
YP_002554541.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_002554542.1	KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ type-2 family protein; SMART: Lysozyme subfamily 2
YP_002554543.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ajs:Ajs_3837 flagellar hook-associated protein FlgK
YP_002554544.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: ajs:Ajs_3838 flagellar hook-associated protein 3
YP_002554545.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein
YP_002554546.1	PFAM: sodium:neurotransmitter symporter; KEGG: ajs:Ajs_3840 sodium:neurotransmitter symporter
YP_002554547.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD
YP_002554548.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: ajs:Ajs_3842 GntR family transcriptional regulator
YP_002554549.1	KEGG: ajs:Ajs_3843 hypothetical protein
YP_002554550.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_3844 hypothetical protein
YP_002554551.1	PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator
YP_002554552.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ajs:Ajs_3846 PhzF family phenazine biosynthesis protein
YP_002554553.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3847 hypothetical protein
YP_002554554.1	KEGG: ajs:Ajs_3848 hypothetical protein
YP_002554555.1	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3849 putative UreA/short-chain amide ABC transporter
YP_002554556.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3850 short-chain dehydrogenase/reductase SDR
YP_002554557.1	PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_3851 phosphoglycerate mutase
YP_002554558.1	PFAM: Creatininase; KEGG: ajs:Ajs_3852 creatininase
YP_002554559.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: ajs:Ajs_3853 metal-dependent hydrolases related to alanyl-tRNA synthetase
YP_002554560.1	PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: ajs:Ajs_3854 cytochrome c biogenesis protein, transmembrane region
YP_002554561.1	PFAM: protein of unknown function DUF323; KEGG: ajs:Ajs_3855 hypothetical protein
YP_002554562.1	TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: ajs:Ajs_3856 Na+/H+ antiporter NhaA
YP_002554563.1	KEGG: ajs:Ajs_3857 CoA-binding domain-containing protein
YP_002554564.1	KEGG: ajs:Ajs_3858 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_002554565.1	PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_3859 integral membrane protein TerC
YP_002554566.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3860 LysR family transcriptional regulator
YP_002554567.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002554568.1	KEGG: ajs:Ajs_3862 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicases
YP_002554569.1	KEGG: ajs:Ajs_3863 L-asparaginases, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase
YP_002554570.1	PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier
YP_002554571.1	PFAM: UvrD/REP helicase; KEGG: ajs:Ajs_3865 UvrD/REP helicase
YP_002554572.1	KEGG: ajs:Ajs_3866 hypothetical protein
YP_002554573.1	PFAM: phospholipase A1; KEGG: ajs:Ajs_3867 phospholipase A1
YP_002554574.1	KEGG: ajs:Ajs_3868 hypothetical protein
YP_002554575.1	PFAM: UspA domain protein; KEGG: ajs:Ajs_3869 UspA domain-containing protein
YP_002554576.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002554577.1	PFAM: protein of unknown function DUF72; KEGG: pna:Pnap_0190 protein of unknown function DUF72
YP_002554578.1	KEGG: ajs:Ajs_3872 hypothetical protein
YP_002554579.1	KEGG: ajs:Ajs_3873 hypothetical protein
YP_002554580.1	KEGG: ajs:Ajs_3874 hypothetical protein
YP_002554581.1	KEGG: ajs:Ajs_3875 hypothetical protein
YP_002554582.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_3876 AsnC family transcriptional regulator
YP_002554583.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_002554584.1	PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase
YP_002554585.1	SMART: helix-turn-helix domain protein; KEGG: ajs:Ajs_3879 XRE family transcriptional regulator
YP_002554586.1	KEGG: bpm:BURPS1710b_A1017 hypothetical protein
YP_002554587.1	KEGG: ajs:Ajs_3881 hypothetical protein
YP_002554588.1	KEGG: ajs:Ajs_3882 hypothetical protein
YP_002554589.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3883 hypothetical protein
YP_002554590.1	PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase
YP_002554591.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme
YP_002554592.1	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_3886 D-amino-acid dehydrogenase
YP_002554593.1	PFAM: domain of unknown function DUF1745; KEGG: ajs:Ajs_3887 hypothetical protein
YP_002554594.1	KEGG: ajs:Ajs_3888 hypothetical protein
YP_002554595.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: ajs:Ajs_3889 histone family protein DNA-binding protein
YP_002554596.1	KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase
YP_002554597.1	PFAM: integrase family protein; KEGG: lch:Lcho_2977 integrase family protein
YP_002554598.1	PFAM: transposase mutator type; KEGG: ajs:Ajs_2663 transposase, mutator type
YP_002554599.1	PFAM: Prophage CP4-57 regulatory; KEGG: gbm:Gbem_3477 phage transcriptional regulator, AlpA
YP_002554600.1	KEGG: neu:NE2545 hypothetical protein
YP_002554601.1	KEGG: neu:NE2544 helix-hairpin-helix DNA-binding motif-containing protein
YP_002554602.1	KEGG: neu:NE2543 hypothetical protein
YP_002554603.1	KEGG: mms:mma_3461 hypothetical protein
YP_002554604.1	PFAM: Resolvase domain; Recombinase; KEGG: bte:BTH_I0075 recombinase
YP_002554605.1	KEGG: mms:mma_3459 chromosome partitionning protein ParB; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease
YP_002554606.1	PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease; KEGG: mms:mma_3458 hypothetical protein
YP_002554607.1	KEGG: mms:mma_3457 hypothetical protein
YP_002554608.1	KEGG: neu:NE2519 hypothetical protein
YP_002554609.1	KEGG: spl:Spea_2313 type III restriction protein res subunit
YP_002554610.1	PFAM: Integrase catalytic region; KEGG: ajs:Ajs_1844 integrase catalytic subunit
YP_002554611.1	PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_1845 transposase IS3/IS911 family protein
YP_002554612.1	KEGG: spl:Spea_2311 hypothetical protein
YP_002554613.1	PFAM: sigma-70 region 4 domain protein; KEGG: spl:Spea_2309 sigma-70 region 4 domain-containing protein
YP_002554614.1	PFAM: ATPase associated with various cellular activities AAA_5; KEGG: csc:Csac_0603 ATPase
YP_002554616.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ava:Ava_3014 DNA methylase N-4/N-6
YP_002554617.1	KEGG: mxa:MXAN_0297 hypothetical protein
YP_002554618.1	PFAM: glycoside hydrolase family 24; KEGG: bmu:Bmul_2309 glycoside hydrolase family protein
YP_002554619.1	KEGG: mms:mma_2787 hypothetical protein
YP_002554620.1	KEGG: mms:mma_2786 hypothetical protein
YP_002554621.1	KEGG: mca:MCA2677 hypothetical protein
YP_002554622.1	KEGG: mca:MCA2676 hypothetical protein
YP_002554623.1	KEGG: mca:MCA2675 hypothetical protein
YP_002554624.1	KEGG: mca:MCA2674 hypothetical protein
YP_002554625.1	KEGG: mca:MCA2673 hypothetical protein
YP_002554626.1	KEGG: mca:MCA2672 hypothetical protein
YP_002554627.1	KEGG: mca:MCA2671 hypothetical protein
YP_002554628.1	TIGRFAM: phage tape measure protein; KEGG: mca:MCA2670 prophage LambdaMc01, tail tape measure protein, putative
YP_002554629.1	KEGG: mca:MCA2669 hypothetical protein
YP_002554630.1	KEGG: mca:MCA2668 hypothetical protein
YP_002554631.1	KEGG: mca:MCA2667 hypothetical protein
YP_002554632.1	KEGG: mca:MCA2666 hypothetical protein
YP_002554633.1	KEGG: rso:RSc0862 signal peptide protein
YP_002554634.1	KEGG: mca:MCA2664 hypothetical protein
YP_002554635.1	KEGG: hch:HCH_05665 hypothetical protein
YP_002554636.1	KEGG: mca:MCA2662 hypothetical protein
YP_002554637.1	PFAM: peptidase S49; KEGG: mca:MCA2661 prophage LambdaMc01, U7 family peptidase
YP_002554638.1	TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: mca:MCA2660 prophage LambdaMc01, lambda family portal protein
YP_002554639.1	KEGG: mca:MCA2659 hypothetical protein
YP_002554640.1	PFAM: terminase GpA; KEGG: mms:mma_2764 phage terminase, large subunit
YP_002554641.1	KEGG: sml:Smlt1874 hypothetical protein
YP_002554642.1	KEGG: sml:Smlt1875 hypothetical protein
YP_002554643.1	KEGG: mms:mma_2762 hypothetical protein
YP_002554644.1	KEGG: aci:ACIAD2009 hypothetical protein
YP_002554645.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: mms:mma_2757 DNA modification methylase
YP_002554646.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: mms:mma_2756 phage related DNA methyltransferase
YP_002554647.1	KEGG: mca:MCA2651 hypothetical protein
YP_002554648.1	KEGG: mca:MCA2650 hypothetical protein
YP_002554649.1	KEGG: sml:Smlt1885 hypothetical protein
YP_002554650.1	TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: sml:Smlt1886 putative phage-related protein
YP_002554651.1	KEGG: mca:MCA2647 hypothetical protein
YP_002554652.1	KEGG: sml:Smlt1888 hypothetical protein
YP_002554653.1	KEGG: mms:mma_2693 hypothetical protein
YP_002554654.1	KEGG: sml:Smlt1890 hypothetical protein
YP_002554655.1	KEGG: sml:Smlt1891 hypothetical protein
YP_002554656.1	PFAM: BRO domain protein; KEGG: sml:Smlt1892 putative phage-related protein
YP_002554657.1	KEGG: mms:mma_2747 hypothetical protein
YP_002554658.1	KEGG: sml:Smlt1893 hypothetical protein
YP_002554659.1	KEGG: bvi:Bcep1808_3270 hypothetical protein
YP_002554660.1	KEGG: bvi:Bcep1808_3271 hypothetical protein
YP_002554661.1	PFAM: Resolvase domain; Recombinase; KEGG: bvi:Bcep1808_3272 resolvase domain-containing protein
YP_002554662.1	KEGG: bvi:Bcep1808_3273 hypothetical protein
YP_002554663.1	PFAM: protein of unknown function DUF262; KEGG: psa:PST_3442 hypothetical protein
YP_002554664.1	PFAM: protein of unknown function DUF955; KEGG: bvi:Bcep1808_3274 hypothetical protein
YP_002554665.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpd:RPD_2295 transcriptional regulator
YP_002554666.1	KEGG: nwi:Nwi_1958 hypothetical protein
YP_002554667.1	KEGG: vei:Veis_4717 hypothetical protein
YP_002554668.1	KEGG: maq:Maqu_1259 hypothetical protein
YP_002554669.1	PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; KEGG: ajs:Ajs_3891 two component fis family transcriptional regulator
YP_002554670.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase
YP_002554671.1	KEGG: ajs:Ajs_3893 hypothetical protein
YP_002554672.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: ajs:Ajs_3894 sun protein
YP_002554673.1	KEGG: ajs:Ajs_3895 hypothetical protein
YP_002554674.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002554675.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002554676.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002554677.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002554678.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002554679.1	binds directly to 23S ribosomal RNA
YP_002554680.1	KEGG: ajs:Ajs_3902 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; SMART: KOW domain protein; NGN domain protein
YP_002554681.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002554682.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002554683.1	PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_3905 transposase IS3/IS911 family protein
YP_002554684.1	PFAM: Integrase catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region
YP_002554685.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_002554686.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: ajs:Ajs_3908 benzoate transporter
YP_002554687.1	PFAM: K potassium transporter; KEGG: ajs:Ajs_3909 K+ potassium transporter
YP_002554688.1	TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: ajs:Ajs_3910 glutamate--cysteine ligase
YP_002554689.1	PFAM: cation transporter; KEGG: ajs:Ajs_3911 cation transporter
YP_002554690.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_002554691.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002554692.1	KEGG: ajs:Ajs_3914 hypothetical protein
YP_002554693.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_002554694.1	PFAM: Rare lipoprotein B; KEGG: ajs:Ajs_3916 rare lipoprotein B
YP_002554695.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002554696.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel
YP_002554697.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR
YP_002554698.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3921 MotA/TolQ/ExbB proton channel
YP_002554699.1	KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase
YP_002554700.1	PFAM: SmpA/OmlA domain protein; KEGG: ajs:Ajs_3923 SmpA/OmlA domain-containing protein
YP_002554701.1	PFAM: ferric-uptake regulator; KEGG: ajs:Ajs_3924 ferric uptake regulator family protein
YP_002554702.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_002554703.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN
YP_002554704.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ajs:Ajs_3927 SSU ribosomal protein S30P / sigma 54 modulation protein
YP_002554705.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002554706.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_3929 TonB-dependent siderophore receptor
YP_002554707.1	PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ajs:Ajs_3930 protein of unknown function DUF306, MetA and HslJ
YP_002554708.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ajs:Ajs_3931 thioredoxin
YP_002554709.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: ajs:Ajs_3932 PfpI family intracellular peptidase
YP_002554710.1	KEGG: ajs:Ajs_3933 hypothetical protein
YP_002554711.1	KEGG: ajs:Ajs_3934 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_002554712.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002554713.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: ajs:Ajs_3936 translation factor SUA5
YP_002554714.1	KEGG: ajs:Ajs_3937 lipase
YP_002554715.1	PFAM: OmpW family protein; KEGG: dac:Daci_0979 OmpW family protein
YP_002554716.1	PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_4567 phospholipase/lecithinase/hemolysin-like protein
YP_002554717.1	KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase PBP3; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C
YP_002554718.1	PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease
YP_002554719.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_3941 SSU ribosomal protein S18P alanine acetyltransferase
YP_002554720.1	KEGG: ajs:Ajs_3942 phage SPO1 DNA polymerase-related protein
YP_002554721.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_3943 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_002554722.1	KEGG: ajs:Ajs_3944 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase
YP_002554723.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3945 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002554724.1	PFAM: thiamineS protein; KEGG: ajs:Ajs_3946 thiamineS protein
YP_002554725.1	KEGG: ajs:Ajs_3947 hypothetical protein
YP_002554726.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: ajs:Ajs_3948 magnesium and cobalt transport protein CorA
YP_002554727.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002554728.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase
YP_002554729.1	PFAM: NAD(P) transhydrogenase beta subunit; KEGG: ajs:Ajs_3951 NAD(P) transhydrogenase, beta subunit
YP_002554730.1	KEGG: ajs:Ajs_3952 NAD(P) transhydrogenase, subunit alpha part 2
YP_002554731.1	KEGG: ajs:Ajs_3953 hypothetical protein
YP_002554732.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ajs:Ajs_3954 NAD(P)(+) transhydrogenase (AB-specific)
YP_002554733.1	KEGG: ajs:Ajs_3955 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II
YP_002554734.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002554735.1	PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: ajs:Ajs_3957 aminopeptidase P
YP_002554736.1	KEGG: fgenesh1_pg.C_scaffold_2000717.
YP_002554737.1	KEGG: ajs:Ajs_3958 nucleotidyl transferase
YP_002554738.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ajs:Ajs_3959 transketolase
YP_002554739.1	KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_002554740.1	PFAM: protein of unknown function DUF924; KEGG: ajs:Ajs_3961 hypothetical protein
YP_002554741.1	KEGG: ajs:Ajs_3962 ribosomal subunit interface protein, putative
YP_002554742.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: ajs:Ajs_3963 peptidase C26
YP_002554743.1	KEGG: ajs:Ajs_3964 peptidylprolyl isomerase, FKBP-type
YP_002554744.1	PFAM: Pirin domain protein; KEGG: ajs:Ajs_3965 pirin domain-containing protein
YP_002554745.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: ajs:Ajs_3966 3-demethylubiquinone-9 3-methyltransferase
YP_002554746.1	KEGG: ajs:Ajs_3967 hypothetical protein
YP_002554747.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3968 short-chain dehydrogenase/reductase SDR
YP_002554748.1	KEGG: ajs:Ajs_3969 hypothetical protein
YP_002554749.1	PFAM: DTW domain containing protein; KEGG: ajs:Ajs_3970 DTW domain-containing protein
YP_002554750.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ajs:Ajs_3971 IclR family transcriptional regulator
YP_002554751.1	KEGG: ajs:Ajs_3972 thiolase
YP_002554752.1	PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_3973 hypothetical protein
YP_002554753.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3974 hypothetical protein
YP_002554754.1	PFAM: CoA-binding domain protein; KEGG: ajs:Ajs_3975 CoA-binding domain-containing protein
YP_002554755.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein
YP_002554756.1	PFAM: Integrase catalytic region; KEGG: mlo:mlr6150 transposase
YP_002554757.1	PFAM: transposase IS3/IS911 family protein; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein
YP_002554758.1	KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein
YP_002554759.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002554760.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002554762.1	KEGG: shl:Shal_0526 hypothetical protein
YP_002554763.1	PFAM: protein of unknown function DUF1010; KEGG: ajs:Ajs_3982 hypothetical protein
YP_002554764.1	KEGG: psb:Psyr_3806 hypothetical protein
YP_002554765.1	PFAM: transposase mutator type; KEGG: ajs:Ajs_2663 transposase, mutator type
YP_002554766.1	KEGG: ajs:Ajs_3989 hypothetical protein
YP_002554767.1	decatenates replicating daughter chromosomes
YP_002554768.1	PFAM: nuclear protein SET; SMART: nuclear protein SET; KEGG: ajs:Ajs_3991 nuclear protein SET
YP_002554769.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: ajs:Ajs_3992 biotin--acetyl-CoA-carboxylase ligase
YP_002554770.1	PFAM: Sporulation domain protein; KEGG: ajs:Ajs_3993 sporulation domain-containing protein
YP_002554771.1	PFAM: transposase IS4 family protein; KEGG: nmc:NMC0088 putative IS1106 transposase
YP_002554772.1	PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_3995 N-formylglutamate amidohydrolase
YP_002554773.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3996 hypothetical protein
YP_002554774.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3997 LysR family transcriptional regulator
YP_002554775.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_3998 integral membrane sensor signal transduction histidine kinase
YP_002554776.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_3999 two component transcriptional regulator
YP_002554777.1	PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator
YP_002554778.1	KEGG: ajs:Ajs_4001 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_002554779.1	KEGG: ajs:Ajs_4002 regulatory protein RecX
YP_002554780.1	KEGG: ajs:Ajs_4003 hypothetical protein
YP_002554781.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002554782.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002554783.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ajs:Ajs_4006 protein translocase subunit YajC
YP_002554784.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_4007 MscS mechanosensitive ion channel
YP_002554785.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_002554786.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_4009 AsnC family transcriptional regulator
YP_002554787.1	KEGG: ajs:Ajs_4010 hypothetical protein
YP_002554788.1	KEGG: ajs:Ajs_4011 hypothetical protein
YP_002554789.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_4012 protein of unknown function DUF894, DitE
YP_002554790.1	PFAM: MltA domain protein; 3D domain protein; KEGG: ajs:Ajs_4013 MltA domain-containing protein
YP_002554791.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_4014 OmpA/MotB domain-containing protein
YP_002554792.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ajs:Ajs_4015 response regulator receiver protein
YP_002554793.1	KEGG: ajs:Ajs_4016 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002554794.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ajs:Ajs_4017 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002554795.1	KEGG: ajs:Ajs_4018 hypothetical protein
YP_002554796.1	PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: ajs:Ajs_4019 (glutamate--ammonia-ligase) adenylyltransferase
YP_002554797.1	PFAM: regulatory protein TetR; KEGG: ajs:Ajs_4020 TetR family transcriptional regulator
YP_002554798.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_4021 RND efflux system outer membrane lipoprotein
YP_002554799.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_4022 RND family efflux transporter MFP subunit
YP_002554800.1	PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein
YP_002554801.1	PFAM: glutathione peroxidase; KEGG: ajs:Ajs_4024 glutathione peroxidase
YP_002554802.1	PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_4025 glutathione S-transferase domain-containing protein
YP_002554803.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002554804.1	PFAM: YaeQ family protein; KEGG: ajs:Ajs_4027 YaeQ family protein
YP_002554805.1	KEGG: ajs:Ajs_4028 hypothetical protein
YP_002554806.1	PFAM: protein of unknown function DUF1289; KEGG: ajs:Ajs_4029 hypothetical protein
YP_002554807.1	PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4030 integral membrane protein TerC
YP_002554808.1	KEGG: ajs:Ajs_4031 hypothetical protein
YP_002554809.1	PFAM: membrane protein of unknown function; KEGG: ajs:Ajs_4032 membrane protein of unknown function
YP_002554810.1	PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_4033 peptidase M48, Ste24p
YP_002554811.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC
YP_002554812.1	KEGG: fgenesh4_pg.C_scaffold_2883000002.
YP_002554813.1	KEGG: ngk:NGK_0721 FimB
YP_002554814.1	KEGG: fgenesh4_pg.C_scaffold_2883000002.
YP_002554815.1	PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ajs:Ajs_4043 FHA domain-containing protein
YP_002554816.1	PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein
YP_002554817.1	PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4045 integral membrane protein TerC
YP_002554818.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_002554819.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_002554820.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_002554821.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ajs:Ajs_4049 fis family transcriptional regulator
YP_002554822.1	PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM
YP_002554823.1	KEGG: ajs:Ajs_4051 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_002554824.1	KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane
YP_002554825.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase
YP_002554826.1	PFAM: AzlC family protein; KEGG: ajs:Ajs_4054 AzlC family protein
YP_002554827.1	PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport
YP_002554828.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002554829.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_4057 hypothetical protein
YP_002554830.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002554831.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_0823 LysR family transcriptional regulator
YP_002554832.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4060 hypothetical protein
YP_002554833.1	KEGG: ajs:Ajs_4061 hypothetical protein
YP_002554834.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_4062 methyl-accepting chemotaxis sensory transducer
YP_002554835.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: ajs:Ajs_4063 sodium/proline symporter
YP_002554836.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ajs:Ajs_4064 excinuclease ABC subunit A
YP_002554837.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter
YP_002554838.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_4066 single-strand binding protein
YP_002554839.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: ajs:Ajs_4067 L-lactate transport
YP_002554840.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002554841.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4069 LysR family transcriptional regulator
YP_002554842.1	catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica
YP_002554843.1	TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain-containing protein
YP_002554844.1	PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4073 hypothetical protein
YP_002554845.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dac:Daci_1100 putative sigma54 specific transcriptional regulator
YP_002554846.1	PFAM: carboxyl transferase; KEGG: dac:Daci_1099 propionyl-CoA carboxylase
YP_002554847.1	PFAM: conserved hypothetical protein; KEGG: dac:Daci_1098 hypothetical protein
YP_002554848.1	PFAM: CoA-binding domain protein; KEGG: dac:Daci_1097 CoA-binding domain-containing protein
YP_002554849.1	PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: dac:Daci_1096 carbamoyl-phosphate synthase L chain ATP-binding
YP_002554850.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: dac:Daci_1095 biotin/lipoyl attachment domain-containing protein
YP_002554851.1	PFAM: thioesterase superfamily protein; KEGG: dac:Daci_1094 thioesterase superfamily protein
YP_002554852.1	PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_4074 NUDIX hydrolase
YP_002554853.1	KEGG: vei:Veis_4931 hypothetical protein
YP_002554854.1	TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_4075 TonB-dependent copper receptor
YP_002554855.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_4076 GCN5-related N-acetyltransferase
YP_002554856.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002554857.1	PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase
YP_002554858.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_4083 two component transcriptional regulator
YP_002554859.1	PFAM: Propeptide PepSY amd peptidase M4; KEGG: ajs:Ajs_4084 membrane protein
YP_002554860.1	PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: ajs:Ajs_4085 ferric reductase domain-containing protein
YP_002554861.1	KEGG: ajs:Ajs_4086 hypothetical protein
YP_002554862.1	KEGG: ajs:Ajs_4087 hypothetical protein
YP_002554863.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit
YP_002554864.1	PFAM: ApbE family lipoprotein; KEGG: ajs:Ajs_4089 ApbE family lipoprotein
YP_002554865.1	KEGG: ajs:Ajs_4090 hypothetical protein
YP_002554866.1	KEGG: ajs:Ajs_4091 hypothetical protein
YP_002554867.1	KEGG: nca:Noca_1621 hypothetical protein
YP_002554868.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: cpf:CPF_0312 signal peptidase I
YP_002554869.1	KEGG: tbd:Tbd_2177 hypothetical protein
YP_002554870.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bte:BTH_I1801 cyclic nucleotide-binding domain-containing protein
YP_002554871.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pna:Pnap_3565 ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_002554872.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002554873.1	PFAM: protein of unknown function DUF350; KEGG: ajs:Ajs_4097 hypothetical protein
YP_002554874.1	KEGG: ajs:Ajs_4098 putative transmembrane protein
YP_002554875.1	PFAM: band 7 protein; KEGG: ajs:Ajs_4099 putative transmembrane protein
YP_002554876.1	KEGG: ajs:Ajs_4100 hypothetical protein
YP_002554877.1	KEGG: eba:ebA175 hypothetical protein
YP_002554878.1	KEGG: tcx:Tcr_0235 hypothetical protein
YP_002554879.1	PFAM: flagellar basal body rod protein; KEGG: ajs:Ajs_4101 flagellar basal body rod protein
YP_002554880.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4102 LysR family transcriptional regulator
YP_002554881.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_002554882.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_4104 methylmalonate-semialdehyde dehydrogenase [acylating]
YP_002554883.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_6022 GntR domain-containing protein
YP_002554884.1	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_6023 branched chain amino acid ABC transporter periplasmic ligand-binding protein
YP_002554885.1	PFAM: inner-membrane translocator; KEGG: dac:Daci_6024 inner-membrane translocator
YP_002554886.1	PFAM: inner-membrane translocator; KEGG: dac:Daci_6025 inner-membrane translocator
YP_002554887.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_6026 ABC transporter related
YP_002554888.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_6027 ABC transporter related
YP_002554889.1	KEGG: dac:Daci_6028 amidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002554890.1	PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: dac:Daci_6029 MlrC domain-containing protein
YP_002554891.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_002554892.1	PFAM: guanine-specific ribonuclease N1 and T1; KEGG: ajs:Ajs_4107 guanine-specific ribonuclease N1 and T1
YP_002554893.1	PFAM: Barstar (barnase inhibitor); KEGG: ajs:Ajs_4108 hypothetical protein
YP_002554894.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002554895.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: ajs:Ajs_4111 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_002554896.1	PFAM: Organic solvent tolerance protein; KEGG: ajs:Ajs_4112 organic solvent tolerance protein
YP_002554897.1	PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase
YP_002554898.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002554899.1	KEGG: ajs:Ajs_4115 hypothetical protein
YP_002554900.1	KEGG: ajs:Ajs_4116 hypothetical protein
YP_002554901.1	PFAM: SMC domain protein; KEGG: ajs:Ajs_4117 SMC domain-containing protein
YP_002554902.1	KEGG: ajs:Ajs_4119 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002554903.1	PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_4120 alpha/beta hydrolase fold
YP_002554904.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ajs:Ajs_4121 peptidase M20
YP_002554905.1	KEGG: ajs:Ajs_4122 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002554906.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_4123 methyl-accepting chemotaxis sensory transducer
YP_002554907.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_4124 methionine biosynthesis protein MetW
YP_002554908.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_002554909.1	PFAM: protein of unknown function UPF0016; KEGG: ajs:Ajs_4126 hypothetical protein
YP_002554910.1	PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: ajs:Ajs_4127 RNP-1 like RNA-binding protein
YP_002554911.1	PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein
YP_002554912.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase
YP_002554913.1	PFAM: protein of unknown function DUF1239; KEGG: ajs:Ajs_4130 hypothetical protein
YP_002554914.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: ajs:Ajs_4131 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
YP_002554915.1	KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); SMART: CBS domain containing protein
YP_002554916.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: ajs:Ajs_4133 potassium efflux system protein
YP_002554917.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002554918.1	KEGG: ajs:Ajs_4136 hypothetical protein
YP_002554919.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: ajs:Ajs_4137 cyclic nucleotide-binding protein
YP_002554920.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002554921.1	KEGG: rpi:Rpic_2654 hypothetical protein
YP_002554922.1	PFAM: conjugation TrbI family protein; KEGG: rpi:Rpic_2653 conjugation TrbI family protein
YP_002554923.1	TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpi:Rpic_2652 P-type conjugative transfer protein TrbG
YP_002554924.1	PFAM: Conjugal transfer protein; KEGG: rpi:Rpic_2651 conjugal transfer protein
YP_002554925.1	type IV secretion VirB6 family
YP_002554926.1	KEGG: dac:Daci_2694 putative lipoprotein
YP_002554927.1	TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: dac:Daci_2695 P-type conjugative transfer protein TrbJ
YP_002554928.1	type IV secretion system VirB4 family
YP_002554929.1	KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein
YP_002554930.1	PFAM: Conjugal transfer protein TrbC; KEGG: dac:Daci_2698 conjugal transfer protein TrbC
YP_002554931.1	TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: dac:Daci_2699 P-type conjugative transfer ATPase TrbB
YP_002554932.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: dac:Daci_2700 CopG/DNA-binding domain-containing protein
YP_002554933.1	type IV secretion VirD4 coupling protein family
YP_002554934.1	KEGG: dac:Daci_0441 hypothetical protein
YP_002554935.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2703 LysR family transcriptional regulator
YP_002554936.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: bbr:BB1102 two component response regulator
YP_002554937.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbr:BB1101 two component sensor kinase
YP_002554938.1	PFAM: protein of unknown function DUF156; KEGG: nha:Nham_1887 hypothetical protein
YP_002554939.1	PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter
YP_002554940.1	P-type ATPase involved in magnesium influx
YP_002554941.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02376 putative outer membrane channel lipoprotein transmembrane
YP_002554942.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: xcv:XCV2107 RND superfamily protein
YP_002554943.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_1549 RND family efflux transporter MFP subunit
YP_002554944.1	KEGG: aav:Aave_0650 hypothetical protein
YP_002554945.1	KEGG: dac:Daci_0453 hypothetical protein
YP_002554946.1	KEGG: rme:Rmet_3020 TraF peptidase. Serine peptidase. MEROPS family S26C
YP_002554947.1	KEGG: rme:Rmet_1257 hypothetical protein
YP_002554948.1	KEGG: rme:Rmet_1256 hypothetical protein
YP_002554949.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase
YP_002554950.1	KEGG: dac:Daci_0458 putative replication initiator and transcription repressor protein
YP_002554951.1	KEGG: rpi:Rpic_2619 hypothetical protein
YP_002554952.1	KEGG: ajs:Ajs_2651 hypothetical protein
YP_002554953.1	KEGG: rpi:Rpic_2617 putative lipoprotein
YP_002554954.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pau:PA14_31160 hypothetical protein
YP_002554955.1	PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_3029 protein of unknown function DUF736
YP_002554956.1	KEGG: dac:Daci_2732 hypothetical protein
YP_002554957.1	PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: bpt:Bpet2176 ParB-like nuclease
YP_002554958.1	PFAM: protein of unknown function DUF932; KEGG: pap:PSPA7_3741 protein YafZ
YP_002554959.1	KEGG: rme:Rmet_1475 hypothetical protein
YP_002554960.1	KEGG: rme:Rmet_1243 hypothetical protein
YP_002554961.1	TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein
YP_002554962.1	PFAM: protein of unknown function DUF1016; KEGG: zmo:ZMO1931 hypothetical protein
YP_002554963.1	PFAM: integrase family protein; KEGG: rpi:Rpic_2601 integrase family protein
YP_002554964.1	PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein
YP_002554965.1	TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: ajs:Ajs_4140 protein translocase subunit YidC
YP_002554966.1	PFAM: protein of unknown function DUF37; KEGG: ajs:Ajs_4141 hypothetical protein
YP_002554967.1	KEGG: ajs:Ajs_4142 hypothetical protein
YP_002554968.1	in Escherichia coli transcription of this gene is enhanced by polyamines