-- dump date   	20140619_065306
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003880782.1	asparagine is a repressor of the activator AsnC; AsnC belongs to the AsnC family of transcriptional regulators
YP_003880786.1	end of contig51
YP_003880791.1	The inducer for rbsR is ribose; RbsR belongs to the LacI family of transcriptional regulators
YP_003880801.1	GlnG is phosphorylated by the sensor-histidine kinase GlnL in response to ammonia availability
YP_003880853.1	IS1111 family
YP_003880879.1	This protein contains a Winged helix DNA-binding domain
YP_003880900.1	lipoproteine
YP_003880910.1	sigma 32 is cleaved by the membrane bound protease FtsH (HflB) and by the cytosolic protease ClpQY (HslVU)
YP_003880912.1	Erwinia chrysanthemi has only one high-affinity branched-chain amino acid-binding protein, whereas E. coli has two: LivJ (leucine, isoleucine, valine substrate-binding protein; LIV), and LivK (leucine-specific substrate-binding protein; LS). The E. chrysanthemi protein was named LivK on the basis of gene context and similarity, but it is also very similar to LivJ. There is no experimental evidence regarding the ligand specificity of this protein.
YP_003880936.1	CpxR is phosphorylated by the sensor histidine kinase CpxA in response to envelope stress
YP_003880967.1	CytR belongs to the LacI family of transcriptional regulator; CytR binds cytidine and adenosine as effector
YP_003880970.1	MetJ belongs to the MetJ family of transcriptional regulators; S-adenosylmethionine is the corepressor of MetJ
YP_003880975.1	OxyR belongs to the LysR family of transcriptional regulators; OxyR is inactivated by reduction of its essential disulfide bond (Cys 199-Cys 208); while other genes regulated by OxyR are present in ECH3937, the gene for the regulatory RNA OxyS is not detected
YP_003880977.1	FabR belongs to the TetR family of transcriptional regulator
YP_003880984.1	the corepressor for BirA is biotinyl-5'-AMP; BirA is a bifunctional protein with both repressor activity and biotin-holoenzyme synthetase activity
YP_003880988.1	this is tufB, not tufA; based on genome context in comparison to E. coli
YP_003880997.1	protein consists of two half repeats and two full repeats of GDVKKRFQRFMIRFALMAKLTRWAVA
YP_003881013.1	Rsd sequesters sigma70 and is responsible for replacement of the RNA polymerase sigma subunit from sigma70 to sigmaS during the transition from exponential growth to the stationary phase
YP_003881066.1	QseA is regulated by quorum sensing; Qsea belongs to the lysR family of transcriptional regulators
YP_003881078.1	In E. coli, yhbH is induced by autoinducer 2
YP_003881079.1	sigma 54 is needed for expression of various regulons, promoter specificity set by various activator proteins required for sigma 54 recruitment, originally identified as the sigma factor for nitrogen-controlled genes
YP_003881092.1	first step in murein biosynthesis
YP_003881112.1	ecfH shows sigmaE-dependent transcription in E. coli; E. coli ecfH is a paralog of osmY, an osmotically regulated periplasmic protein of unknown function
YP_003881141.1	ScrR belongs to the LacI family of transcriptional regulators; The inducer for ScrR is fructose
YP_003881174.1	IS3/IS150 family
YP_003881175.1	IS3/IS150 family
YP_003881213.1	This protein contains a RecF/RecN/SMC N terminal domain suggesting a role in DNA metabolism and recombination.
YP_003881248.1	RhaS belongs to the AraC family of transcriptional regulators
YP_003881249.1	RhaR belongs to the AraC family of transcriptional regulators
YP_003881266.1	NadR is a bifunctional protein that is also involved in the transport of NAD; NadR belongs to the Cro/cI family of transcriptional regulators
YP_003881290.1	promoter is bound by pecS
YP_003881341.1	The protein RecA bound to single stranded DNA cleaves LexA, which induces the expression of the SOS regulon; LexA belongs to the LexA family of transcriptional regulators
YP_003881342.1	Zn2+ is the corepressor of Zur; Zur belongs to the Fur family of transcriptional regulators
YP_003881352.1	ExuR belongs to the GntR family of transcriptional regulators
YP_003881361.1	homologous to type III helper protein HopPmaH. However, this protein has cysteines, while HopPmaH lacks cysteines - a characteristic of type III helper proteins. Therefore, this is not likely to be a type III helper
YP_003881362.1	UhpA is phosphorylated by the histidine-kinase UhpB in response to extracellular glucose 6-phosphate concentration
YP_003881380.1	ArgR belongs to the ArgR family of transcriptional regulators
YP_003881454.1	most similar to plant phosphoesterase proteins
YP_003881458.1	IS3/IS407 family
YP_003881459.1	IS3/IS407 family
YP_003881493.1	end of contig25
YP_003881503.1	EmrA, multidrug resistance efflux pump [Defense mechanisms].
YP_003881516.1	this protein contains a YCII-related domain
YP_003881542.1	IS110 family
YP_003881565.1	FOG: HEAT repeat
YP_003881566.1	very similar to the integrase of E. coli cryptic prophage CP4-57, and yet it is integrated into a different site
YP_003881570.1	similar to Y4eB in M.loti, Tn4371
YP_003881575.1	homologous to the N-terminal portion of a conserved hypothetical protein found in many species.
YP_003881582.1	COG1132
YP_003881596.1	BphR is a transcriptional regulator of the lysR family present in the Tn4371 transposon. This transposon which was originally isolated from Ralstonia eutropha A5, carries genes for the degradation of biphenyl/4-chlorobiphenyl. The biological function of BphR is unknown
YP_003881601.1	virB2 subunits for the pilus for the type IV secretion system
YP_003881604.1	Conjugal transfer/entry exclusion
YP_003881639.1	This protein belongs to the zinc beta-ribbon superfamily (SSF57783)
YP_003881641.1	Possible [Haemophilus phage HP1] orf16-like phage protein
YP_003881691.1	phage remnant, similar to C-terminus of CP4-like integrase
YP_003881714.1	NorR has a sigma 54 interaction domain; nitroprusside induces the expression of genes controlled by NorR; belongs to the Fis family
YP_003881743.1	RhiE is secreted by the Out secretion system
YP_003881756.1	This protein contains multiple cadherin-homologous domains likely to bind calcium ions; This protein contains multiple VCBS domains. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion
YP_003881768.1	EmrA domain, multidrug resistance efflux pump [Defense mechanisms]
YP_003881777.1	This protein shows similarity to plasmid copy control proteins and bacteriophage transcription control proteins
YP_003881786.1	IS110 family
YP_003881787.1	IS1111 family
YP_003881805.1	end of contig21; this protein is not involved in sugar transport but probaby serve regulatory role exclusively
YP_003881823.1	GcvA belongs to the LysR family of transcriptional regulators
YP_003881826.1	the previously reported exonuclease activity of YgdG (Xni/ExoIX) was due to copurification with ExoIII (Xth)
YP_003881850.1	degrades RNA of DNA-RNA hybrids
YP_003881900.1	PhoB is phosphorylated by the sensor-histidine kinase in response to phosphate limitation
YP_003881915.1	This protein contains an ATP-cone motif
YP_003881940.1	end of contig40
YP_003881966.1	HylD domain
YP_003881967.1	AcrR belongs to the TetR family of transcriptional regulators
YP_003881982.1	exported protein, presence of a signal peptide
YP_003881991.1	CueR belongs to the merR family of transcriptional regulators
YP_003881996.1	end of contig183, C-terminal of NrdA
YP_003882000.1	RcsB is phosphorylated by the sensor-histidine kinase RcsC; Exopolysaccharide is not equivalent to colanic acid in Erwinia chrysanthemi 3937
YP_003882025.1	Galactose and D-fucose are inducers of GalS; GalS belongs to the LacI family of transcriptional regulators
YP_003882034.1	GcvR is not a DNA-binding transcriptional regulator; GcvR is an accessory protein that binds the GcvA transcriptional regulator.
YP_003882050.1	IS200 family
YP_003882080.1	NagC belongs to the ROK family of transcriptional regulators
YP_003882084.1	end of contig
YP_003882085.1	Fur belongs to the Fur family of transcriptional regulators; The corepressor of Fur is Fe2+
YP_003882094.1	KdpE is phosphorylated by the sensor-histidine kinase KdpD in response to turgor
YP_003882101.1	COG1683: Uncharacterized conserved protein / Hypothetical protein ybgA
YP_003882126.1	protein required for outer membrane integrity
YP_003882133.1	IS4 family
YP_003882145.1	ModE interacts with molybdate
YP_003882154.1	homologous to the Agrobacterium virK gene which is largely uncharacterized; promoter is bound by pecS
YP_003882189.1	this protein contains a GGDEF motif
YP_003882200.1	end of contig20
YP_003882209.1	This protein contains an acyl homoserine lactone binding domain
YP_003882244.1	Belongs to the Fis family
YP_003882255.1	This protein contains a GGDEF domain
YP_003882280.1	IS1111 family
YP_003882295.1	This gene is part of a five gene cluster encoding an ABC transport system. Some components are detected as orthologs of the nikABCDE encoded nickel transporter of Escherichia coli K-12 MG1655 in reciprocal BLASTP analyses, but other components are more similar to peptide transporters from diverse bacteria.
YP_003882296.1	This gene is part of a five gene cluster encoding an ABC transport system. Some components are detected as orthologs of the nikABCDE encoded nickel transporter of Escherichia coli K-12 MG1655 in reciprocal BLASTP analyses, but other components are more similar to peptide transporters from diverse bacteria.
YP_003882297.1	This gene is part of a five gene cluster encoding an ABC transport system. Some components are detected as orthologs of the nikABCDE encoded nickel transporter of Escherichia coli K-12 MG1655 in reciprocal BLASTP analyses, but other components are more similar to peptide transporters from diverse bacteria.
YP_003882298.1	This gene is part of a five gene cluster encoding an ABC transport system. Some components are detected as orthologs of the nikABCDE encoded nickel transporter of Escherichia coli K-12 MG1655 in reciprocal BLASTP analyses, but other components are more similar to peptide transporters from diverse bacteria.
YP_003882299.1	This gene is part of a five gene cluster encoding an ABC transport system. Some components are detected as orthologs of the nikABCDE encoded nickel transporter of Escherichia coli K-12 MG1655 in reciprocal BLASTP analyses, but other components are more similar to peptide transporters from diverse bacteria.
YP_003882300.1	the name marR has been withdrawn from this feature due to a lack of clear orthology to the marR gene present in E. coli and Salmonella, and the absence of the target genes present in the mar operon; The inducers for MarR are phenolic compounds such as salicylate
YP_003882301.1	EmrA domain, multidrug resistance efflux pump (defense mechanisms)
YP_003882303.1	There is 2 Rob orthologs in Erwinia chrysanthemi (IDs 15162 and 15785)
YP_003882315.1	LacI belongs to the LacI family of transcriptional regulators
YP_003882319.1	FhlA belongs to the sigma54 family of trancriptional regulators; FhlA contains a sigma 54-interaction domain; FhlA is a regulatory protein of the Fis family
YP_003882320.1	this gene does not encode a selenopolypeptide -- aa position 140 is C (Cys), not U (SeCys)
YP_003882337.1	Cbl belongs to the LysR family of transcriptional regulators; Cbl belongs to the Cys regulon; Adenosine 5'-phosphosulphate is probably a negative cofactor of Cbl, a sulfur starvation regulator
YP_003882348.1	Glutamate racemase is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics
YP_003882416.1	this gene does not encode a selenopolypeptide -- aa position 196 is C (Cys), not U (SeCys)
YP_003882420.1	IS110 family
YP_003882421.1	RafR belongs to the LacI family of transcriptional regulators
YP_003882477.1	MdcR belongs to the LysR family of transcriptional regulators
YP_003882499.1	Nac belongs to the LysR family of transcriptional regulator
YP_003882515.1	COGs COG3558
YP_003882523.1	IS3/IS407 family
YP_003882531.1	IS30 family
YP_003882535.1	IS3/IS150 family
YP_003882536.1	IS3/IS150 family
YP_003882542.1	IS3/IS51 family
YP_003882543.1	IS3/IS51 family
YP_003882585.1	IS110 family
YP_003882591.1	EmrA domain, multidrug resistance efflux pump
YP_003882623.1	This protein contains a Fibronectin type III domain
YP_003882632.1	IS66 family
YP_003882634.1	end of contig58
YP_003882650.1	probably involved in the degradation of methylated oligogalacturonides present in the periplasm of the bacteria, rather than in a direct action on extracellular pectin
YP_003882669.1	truncated, IS285 family
YP_003882732.1	this protein contains a FkbH domain
YP_003882740.1	changed coordinates, moving start site 213 bp upstream to agree with other annotated genes
YP_003882747.1	IS1111 family
YP_003882765.1	DeoR interacts with deoxyribose-5-phosphate which is the inducer
YP_003882784.1	missing the N-terminal ca 150aa
YP_003882794.1	in E. coli K-12 this protein is a stationary phase-induced stress response protein and overexpression is lethal
YP_003882802.1	Lrp belongs to the AsnC family of transcriptional regulators
YP_003882844.1	citrate lyase biosynthesis enzyme
YP_003882847.1	end of contig127
YP_003882861.1	Involved in chromosome partioning
YP_003882868.1	this protein contains a tat-sequence signal
YP_003882914.1	YebK belongs to the RpiR family of transcriptional regulator
YP_003882935.1	exported protein, presence of a N-terminal signal peptide sequence using SignalP 3.0 server (http://www.cbs.dtu.dk/services/SignalP/)
YP_003882981.1	Experimentally characterized in Shigella (ispA) but known as ispZ in other bacteria
YP_003883002.1	CysB belongs to the LysR family of transcriptional regulators; The inducer for CysB is N-acetylserine
YP_003883016.1	interacts with L-arabinose which is an inducer; interacts with D-fucose which is an anti-inducer
YP_003883028.1	In E. coli, overexpression of ynfL confers sensitivity to acriflavin and trimethoprim
YP_003883029.1	Mlc belongs to the ROK family of transcriptional regulators
YP_003883037.1	FOG: TPR repeat protein
YP_003883057.1	HylD domain
YP_003883085.1	Fnr belongs to the CRP family of transcriptional regulators; Fnr senses the oxygen availability
YP_003883100.1	end of contig211
YP_003883102.1	end of contig556
YP_003883103.1	end of contig74
YP_003883118.1	dspE of Erwinia amylovora is required for pathogenicity
YP_003883120.1	This gene is adjacent to hrpW, and the predicted protein is more similar to the N-terminus of HrpW proteins of other bacteria than the N-terminus of the protein encoded by gene called hrpW.
YP_003883121.1	HR-eliciting activity
YP_003883124.1	may be an TTSS helper
YP_003883141.1	Long chain fatty acid-CoA are corepressors of FadR; FadR belongs to the GntR family of transcriptional regulators
YP_003883183.1	OsmE belongs to the SmpA-OmlA family of bacterial lipoprotein
YP_003883195.1	KdgR interacts with 2-keto-3-deoxygluconate which is an inducer; The consensus KdgR-binding site is ATRAAAYRNYRTTTYAT; KdgR belongs to the IclR family of transcriptional regulator
YP_003883207.1	PhoP is phosphorylated by the sensor-histidine kinase PhoQ in response to the extracellular Mg2+ concentration
YP_003883220.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883221.1	secretion, E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883222.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883223.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883224.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883225.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883226.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883227.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883228.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883229.1	mltB homolog; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883230.1	secretion; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883231.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883232.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883233.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883234.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883235.1	HrpS possesses a sigma 54 interaction domain; belongs to the Fis family; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883236.1	HrpY is a response regulator of a  two component transcriptional regulatory system; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883237.1	end of contig, partial hrpX sequence; Required for wild-type pellicle formation.; E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883238.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883239.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883240.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883241.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883242.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883243.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883244.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883245.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883246.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883247.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883248.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883249.1	E. coli containing D. dadantii hrp cluster is capable of secreting an exogenous effector into tobacco, eliciting a hypersensitive response
YP_003883284.1	ApbA duplicate
YP_003883290.1	IS3/IS150 family
YP_003883291.1	IS3/IS150 family
YP_003883298.1	Presence of a  signal peptide
YP_003883302.1	NarL is phosphorylated by the two sensor-histidine kinases NarX and NarQ in response to the respiratory oxidants nitrate and nitrite
YP_003883396.1	the inducers for TyrR are aromatic amino acids
YP_003883405.1	PspF possesses a sigma 54 activation domain
YP_003883406.1	COG0523:  GTPases (G3E family)
YP_003883431.1	contig end
YP_003883436.1	Hor belongs to the MarR family of transcriptional regulators
YP_003883445.1	PurR belongs to the LacI family of transcrptional regulators; hypoxanthine and guanine are corepressors of PurR
YP_003883475.1	transport protein associated with Fe-S cluster assembly
YP_003883502.1	end of contig119
YP_003883557.1	end of contig194
YP_003883587.1	The BetI protein is a choline-sensing repressor; BetI belongs to theTetR family of transcriptional regulators
YP_003883590.1	PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation
YP_003883592.1	flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons
YP_003883598.1	IS200 family
YP_003883607.1	4.3.A.6.1.2, Flagellar protein export system
YP_003883614.1	4.3.A.6.1.2, Flagellar protein export system
YP_003883615.1	4.3.A.6.1.2, Flagellar protein export system
YP_003883617.1	Add 4.3.A.6.1.2, Flagellar protein export system
YP_003883657.1	PelL is secreted by the Out secretion system
YP_003883667.1	metallo-beta-lactamase superfamily
YP_003883678.1	This protein belongs to the LuxR family of transcriptional regulators; This protein is phosphorylated by the sensor-histidine kinase BarA; The BarA sensor could monitor some metabolic product that is representative of the prevalent energy status in the medium
YP_003883683.1	Nac belongs to the LysR family of transcriptional regulators; Nac is a member of RpoN and GlnG (NtrC) regulons
YP_003883695.1	this protein belongs to the Ner family of transcriptional regulators
YP_003883710.1	Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur
YP_003883712.1	N-terminal region has similarity to VirB3, C-terminal region has similarity to VirB4
YP_003883718.1	Forms the bulk of type IV secretion complex that spans outer membrane and periplasm
YP_003883725.1	IS110 family
YP_003883757.1	IS3/IS407 family
YP_003883758.1	IS3/IS407 family, defective
YP_003883785.1	HylD domain protein
YP_003883796.1	this gene does not encode a selenopolypeptide -- aa position 196 is C (Cys), not U (SeCys)
YP_003883802.1	IS110 family
YP_003883831.1	PecT belongs to the LysR family of transcriptional regulators
YP_003883865.1	The signal transduction histidine kinase associated to the response regulator TctD probably corresponds to ID17792
YP_003883887.1	SixA is a phospho-histidine phosphatase that dephosphorylates the sensor-histidine kinase ArcB
YP_003883895.1	promoter is bound by pecS
YP_003883897.1	H. influenzae homolog e(P4) encoded by the hel gene is a lipoprotein with acid phosphatase activity that is implicated in nicotinamide mononucleotide utilization; H. influenzae homolog e(P4) encoded by the hel gene is essential for hemin uptake
YP_003883898.1	type III (hrp) secreted protein; probably effector
YP_003883899.1	AvrL is secreted by the Out system; promoter is bound by pecS
YP_003883906.1	IS110 family
YP_003883917.1	IS1111 family
YP_003883942.1	IS3/IS150 family
YP_003883943.1	IS3/IS150 family
YP_003883967.1	PelI is secreted by the Out secretion system
YP_003883984.1	Feature ID 17150 is homologous to 17139
YP_003883993.1	homologue to a CHEMOTAXIS protein (TLPB) from Wolinella succinogenes
YP_003884036.1	HylD family protein
YP_003884041.1	BaeR is phosphorylated by the sensor-histidine kinase BaeS in response to envelope stress
YP_003884085.1	IS110 family
YP_003884094.1	This protein belongs to the rrf2 family of transcriptional regulator; IscR is a Fe-S cluster-containing transcription factor that represses expression of genes encoding Fe-S cluster assembly proteins.
YP_003884104.1	end of contig53
YP_003884107.1	PelA is secreted by the Out secretion system
YP_003884108.1	PelE is secreted by the Out secretion system
YP_003884109.1	PelE is secreted by the Out secretion system
YP_003884110.1	PaeY is secreted by the Out secretion system
YP_003884111.1	PemA is secreted by the Out secretion system
YP_003884113.1	yfhA has a sigma54 interaction domain
YP_003884117.1	soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
YP_003884139.1	RseA is an anti-sigma-E factor inserted in the inner membrane, RseA is activated by two successive proteolytic cleavages. First at a periplasmic site by the DegS protease; Second at a cytoplasmic or intramembrane site by the membrane-bound zinc metalloprotease YaeF.
YP_003884144.1	promoter is bound by pecS
YP_003884154.1	adjusted start based on orthologs in Salmonella and Escherichia coli
YP_003884160.1	IS1111 family
YP_003884170.1	belongs to the ner family
YP_003884196.1	degrades RNA of DNA-RNA hybrids
YP_003884222.1	autoinducer 2 is a furanosyl borate diester
YP_003884224.1	end of contig84
YP_003884226.1	Although use of the term rsmA for this feature is prevalent in the literature, that name has been deprecated to a synonym in order to avoid confusion with an RNA methyltransferase feature (ASAP:ADX-0000022).; RsmA belongs to the CsrA family of transcriptional regulator; RsmA activity is modulated by the regulatory RNA RsmB
YP_003884253.1	COG0523:  GTPases (G3E family)
YP_003884254.1	COG2879, Hypothetical small protein yjiX
YP_003884257.1	contains a GAF domain
YP_003884292.1	In Escherichia coli, Crl is a protein that is necessary for the RpoS-dependent expression of the csgBA operon and that enhances the expression of other RpoS-dependent genes. Crl is required for silencing of the Escherichia coli bgl operon by RpoS
YP_003884336.1	Repression of the emrRAB operon by EmrR is relieved in the presence of inducers such as uncouplers of oxidative phosphorylation, salicylic acid, 2,4-dinitrophenol (DNP), carbonyl cyanide m-chlorophenylhydrazone (CCCP), and carbonyl cyanide p-(trifluoro-methoxy)phenylhydrazone (FCCP); EmrR belongs to the MarR family of transcriptional regulators
YP_003884386.1	The sensor-histidine kinase BarA phosphorylates the response regulator UvrY. BarA could monitor some metabolic product that is representative of the prevalent energy status in the medium. The UvrY-BarA two-component regulatory system is also designated ExpA-ExpS in Erwinia carotovora and GacA-GacS in Pseudomonas aeruginosa
YP_003884425.1	contig end
YP_003884461.1	GalR belongs to the LacI family of transcriptional regulator
YP_003884465.1	UxuR belongs to the GntR family of transcriptional regulators
YP_003884470.1	AscG belongs to the LacI family of transcriptional regulators
YP_003884482.1	FOG: TPR repeat
YP_003884505.1	repetative protein with 13.5 direct repeats of SLPSRQLR(N/K)XXXXXXXXXXX; repetitive protein with 13.5 direct repeats of SLPSRQLR(N/K)XXXXXXXXXXX
YP_003884506.1	contains same repetitive sequence as adjacent org (19787); may be a frameshift in the sequence and these two orfs may be one gene
YP_003884511.1	IS110 family
YP_003884577.1	PdhR belongs to the GntR family of transcriptional regulators
YP_003884595.1	contig48 end
YP_003884612.1	FruR binds fructose as an inducer; FruR belongs to the LacI family of transcriptional regulators
YP_003884648.1	The literature for this organism frequently refers to the csrA feature (ASAP:ABF-0019320), an RNA-binding regulatory protein, as rsmA.
YP_003884666.1	NhaR belongs to the LysR family of transcriptional regulators; NhaR DNA-binding activity is modulated by Na+
YP_003884674.1	product contains GGDEF domain. proteins with this domain are involved in c-di-GMP synthesis
YP_003884681.1	ArcA is phosphorylated by the sensor-histidine kinase ArcB
YP_003884683.1	Rob belongs to the AraC family of transcriptional regulators; Rob activity is enhanced by treatment of cells with 2,2'- or 4,4'-dipyridyl; Rob controls the expression of the AcrAB multidrug efflux pump; The rob/marA/soxS are highly overlapping regulons in Escherichia coli. There is no SoxS ortholog in Erwinia chrysanthemi 3937; Rob binds as a monomer to a 20 bp asymmetric sequence with the degenerate consensus AYNGCACNNWNNRYYAAAYN; There is 2 Rob orthologs in Erwinia chrysanthemi (IDs 15162 and 15785)
YP_003884695.1	IciA belongs to the LysR family of transcriptional regulators
YP_003884697.1	Pir belongs to the IclR family of transcriptional regulators
YP_003884711.1	homologous to P. aeruginosa AlgH regulatory protein
YP_003884720.1	Hfq is a RNA-binding protein, that forms hexameric rings.
YP_003884748.1	In Xanthomonas, OhrR is involved in organic hydroperoxide resistance
YP_003884751.1	Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B
YP_003884755.1	IS1111 family
YP_003884759.1	NifA possesses a sigma 54 interaction domain; NifA belongs to the Fis family
YP_003884762.1	First half similar to E. coli Ada (AAA23413), second half similar to E. coli 3-methyl-adenine DNA glycosylase II (AAC75129); binds Zn2+
YP_003884809.1	IclR belongs to the IclR family of transcriptional regulators
YP_003884859.1	this is tufA, not tufB; based on genome context in comparison to E. coli
YP_003884868.1	Fe(III)-responding signal transduction system; alternative name pmrA in Salmonella; PmrA is phosphorylated by the sensor-histidine kinase PmrB in response to Fe (III) extracellular iron concentration; PmrA confers resistance to Fe(III)-mediated killing
YP_003884869.1	The PmrA-PmrB two-component system responding to acidic pH and iron controls virulence in the plant pathogen Erwinia carotovora ssp. carotovora
YP_003884899.1	This protein displays similarities with eukaryotic transmembrane receptor-ion channel complexes
YP_003884901.1	PelB is secreted by the Out secretion system
YP_003884902.1	PelC is secretd by the Out secretion system
YP_003884903.1	PelZ is secreted by the Out secretion system
YP_003884918.1	end of contig6
YP_003884920.1	homologous to Flagellar operon control protein umoB from Proteus mirabilis
YP_003884928.1	OmpR is phosphorylated by the sensor-histidine kinase EnvZ in response to variations of the osmolarity of the growth medium
YP_003884929.1	The proposed biological role of Gre-induced RNA hydrolysis includes transcription proofreading, suppression of transcriptional pausing and arrest, and facilitation of RNAP transition from transcription initiation to transcription elongation
YP_003884938.1	glycerol-3-phosphate is the inducer of GlpR; GlpR belongs to the DeoR family of transcriptional regulators
YP_003884954.1	contains a HATPase motif
YP_003884956.1	Nickel is the corepressor of NikR; NikR belongs to the CopG family of transcriptional regulators
YP_003884961.1	GlnR belongs to the lacI family of transcriptional regulators
YP_003885026.1	PutA is both a proline dehydrogenase and a DNA-binding transcriptional regulator
YP_003885029.1	The inducers of IlvY are acetolactate or acetohydroxybutyrate; IlvY belongs to the LysR family of transcriptional regulators
YP_003885071.1	The inducer for MetR is homocysteine
YP_003885165.1	VfmE belongs to the AraC family of transcriptional regulators
YP_003885176.1	PecS belongs to the MarR family of transcriptional regulators; The PecM protein is necessary for the DNA-binding capacity of the PecS repressor; The consensus DNA-binding site for PecS is CGANWTCGAATATTACGANNNCG
YP_003885181.1	The inducer for XylR is xylose; XylR belongs to the AraC family of transcriptional regulators
YP_003885187.1	IS 110 family
YP_003885194.1	Mtlr belongs to the mtlR family of transcriptional regulators
YP_003885263.1	DnaA binds cardiolipin and other acidic phospholipids. It also binds ATP