-- dump date 20140619_065555 -- class Genbank::CDS -- table cds_note -- id note YP_002249888.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002249889.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002249890.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02308 YP_002249891.1 identified by match to protein family HMM PF00753 YP_002249892.1 identified by match to protein family HMM PF00496 YP_002249893.1 identified by match to protein family HMM PF02353; match to protein family HMM PF03848; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002249894.1 identified by match to protein family HMM PF00515 YP_002249895.1 identified by match to protein family HMM PF00150 YP_002249896.1 identified by match to protein family HMM PF02156; match to protein family HMM PF03422 YP_002249897.1 identified by match to protein family HMM PF00376 YP_002249899.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002249900.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_002249901.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_002249902.1 identified by glimmer YP_002249903.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002249904.1 identified by match to protein family HMM PF00496 YP_002249905.1 identified by match to protein family HMM PF00528 YP_002249906.1 identified by match to protein family HMM PF00528 YP_002249907.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002249908.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002249909.1 identified by match to protein family HMM PF00496 YP_002249910.1 identified by glimmer YP_002249911.1 identified by match to protein family HMM PF00005 YP_002249913.1 identified by match to protein family HMM PF00534 YP_002249914.1 identified by match to protein family HMM PF03401 YP_002249916.1 identified by match to protein family HMM PF01970 YP_002249917.1 identified by match to protein family HMM PF01321 YP_002249918.1 identified by match to protein family HMM PF01408 YP_002249919.1 identified by match to protein family HMM PF03480 YP_002249920.1 identified by glimmer YP_002249921.1 identified by match to protein family HMM PF01645 YP_002249922.1 identified by glimmer YP_002249924.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_002249926.1 identified by match to protein family HMM PF00528 YP_002249927.1 identified by match to protein family HMM PF00528 YP_002249928.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_002249929.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002249930.1 identified by match to protein family HMM PF01120 YP_002249931.1 identified by match to protein family HMM PF02537 YP_002249932.1 identified by match to protein family HMM PF02537 YP_002249933.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_002249934.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002249936.1 identified by match to protein family HMM PF01063 YP_002249937.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715 YP_002249938.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_002249939.1 identified by glimmer YP_002249941.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358 YP_002249942.1 identified by match to protein family HMM PF01547 YP_002249943.1 identified by match to protein family HMM PF00528 YP_002249944.1 identified by match to protein family HMM PF00528 YP_002249945.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244 YP_002249946.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002249947.1 identified by match to protein family HMM PF00440 YP_002249948.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573 YP_002249949.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; match to protein family HMM TIGR03641 YP_002249950.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372 YP_002249951.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596 YP_002249952.1 identified by match to protein family HMM TIGR01895; match to protein family HMM TIGR02593 YP_002249953.1 identified by match to protein family HMM TIGR01875; match to protein family HMM TIGR02585 YP_002249954.1 identified by match to protein family HMM TIGR01908 YP_002249955.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877 YP_002249956.1 identified by match to protein family HMM PF00465 YP_002249957.1 identified by match to protein family HMM PF00535 YP_002249958.1 identified by match to protein family HMM PF02660 YP_002249959.1 identified by match to protein family HMM PF03441 YP_002249960.1 identified by match to protein family HMM PF00535 YP_002249961.1 identified by match to protein family HMM PF02660 YP_002249962.1 identified by match to protein family HMM PF02566 YP_002249963.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002249964.1 identified by match to protein family HMM PF01472; match to protein family HMM PF02475; match to protein family HMM PF03602 YP_002249965.1 identified by match to protein family HMM PF01966 YP_002249966.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002249967.1 identified by match to protein family HMM PF00881 YP_002249968.1 identified by match to protein family HMM PF00849 YP_002249971.1 identified by match to protein family HMM PF02302 YP_002249972.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002249973.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002249974.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002249975.1 identified by match to protein family HMM PF00440 YP_002249977.1 identified by glimmer YP_002249979.1 identified by match to protein family HMM PF03417 YP_002249981.1 identified by match to protein family HMM PF03894 YP_002249982.1 identified by match to protein family HMM PF03415 YP_002249983.1 identified by glimmer YP_002249984.1 identified by glimmer YP_002249985.1 identified by glimmer YP_002249986.1 identified by glimmer YP_002249987.1 identified by glimmer YP_002249988.1 identified by glimmer YP_002249989.1 identified by glimmer YP_002249990.1 identified by match to protein family HMM TIGR02688 YP_002249991.1 identified by glimmer YP_002249992.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002249993.1 identified by match to protein family HMM PF01408 YP_002249994.1 identified by match to protein family HMM PF01869 YP_002249995.1 identified by match to protein family HMM PF01380 YP_002249996.1 identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002249997.1 identified by glimmer YP_002249998.1 identified by match to protein family HMM PF01547 YP_002249999.1 identified by match to protein family HMM PF00528 YP_002250000.1 identified by glimmer YP_002250002.1 identified by match to protein family HMM PF02056 YP_002250003.1 identified by match to protein family HMM PF08013 YP_002250005.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002250006.1 identified by match to protein family HMM PF00005 YP_002250007.1 identified by match to protein family HMM PF02687 YP_002250011.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002250012.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002250013.1 identified by match to protein family HMM PF00076 YP_002250014.1 identified by glimmer YP_002250015.1 identified by match to protein family HMM PF04055 YP_002250016.1 identified by match to protein family HMM PF01522 YP_002250017.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002250018.1 identified by match to protein family HMM PF00892 YP_002250019.1 in Escherichia coli this is the second beta-galactosidase system YP_002250020.1 identified by glimmer YP_002250021.1 identified by match to protein family HMM PF00528 YP_002250022.1 identified by match to protein family HMM PF00528 YP_002250023.1 identified by match to protein family HMM PF01547 YP_002250024.1 identified by match to protein family HMM PF05161 YP_002250025.1 identified by match to protein family HMM PF03551 YP_002250026.1 identified by glimmer YP_002250029.1 identified by match to protein family HMM PF02579 YP_002250030.1 identified by match to protein family HMM PF00753 YP_002250031.1 identified by match to protein family HMM PF00483 YP_002250032.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_002250033.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002250034.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002250035.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002250036.1 identified by match to protein family HMM PF00535 YP_002250037.1 identified by match to protein family HMM PF00535 YP_002250038.1 identified by match to protein family HMM PF00534 YP_002250039.1 identified by glimmer YP_002250041.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877 YP_002250042.1 identified by match to protein family HMM TIGR02556; match to protein family HMM TIGR02591 YP_002250043.1 identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; match to protein family HMM TIGR02590 YP_002250044.1 identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593 YP_002250045.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587 YP_002250046.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372 YP_002250047.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; match to protein family HMM TIGR03641 YP_002250048.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573 YP_002250049.1 identified by glimmer YP_002250050.1 identified by match to protein family HMM PF00310 YP_002250051.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01645 YP_002250052.1 identified by match to protein family HMM PF00037 YP_002250053.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002250054.1 identified by match to protein family HMM PF01493 YP_002250055.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM PF03054; match to protein family HMM TIGR00552 YP_002250056.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002250057.1 identified by match to protein family HMM PF00543 YP_002250058.1 identified by match to protein family HMM PF00909 YP_002250059.1 identified by glimmer YP_002250060.1 identified by glimmer YP_002250061.1 identified by match to protein family HMM PF01011 YP_002250062.1 identified by match to protein family HMM PF01011 YP_002250063.1 identified by glimmer YP_002250064.1 identified by match to protein family HMM TIGR02579 YP_002250065.1 identified by match to protein family HMM TIGR02578 YP_002250066.1 identified by match to protein family HMM TIGR01870 YP_002250067.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582 YP_002250068.1 identified by match to protein family HMM TIGR01903 YP_002250069.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899 YP_002250070.1 identified by match to protein family HMM TIGR02549 YP_002250071.1 identified by match to protein family HMM PF08240; match to protein family HMM TIGR02822 YP_002250072.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002250073.1 identified by match to protein family HMM PF00583 YP_002250074.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_002250076.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002250079.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250080.1 identified by glimmer YP_002250081.1 identified by match to protein family HMM PF04932 YP_002250084.1 identified by glimmer YP_002250085.1 identified by glimmer YP_002250086.1 identified by glimmer YP_002250087.1 identified by match to protein family HMM PF06182 YP_002250088.1 identified by match to protein family HMM PF06182 YP_002250089.1 identified by match to protein family HMM PF00005 YP_002250090.1 identified by match to protein family HMM PF00535 YP_002250091.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002250092.1 identified by match to protein family HMM PF01163 YP_002250093.1 identified by match to protein family HMM PF00534 YP_002250094.1 identified by glimmer YP_002250096.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250098.1 identified by match to protein family HMM PF00005 YP_002250100.1 identified by glimmer YP_002250101.1 identified by match to protein family HMM PF04055 YP_002250102.1 identified by glimmer YP_002250104.1 identified by match to protein family HMM PF00005 YP_002250105.1 identified by match to protein family HMM PF04055 YP_002250106.1 identified by glimmer YP_002250107.1 identified by glimmer YP_002250110.1 identified by match to protein family HMM PF01909 YP_002250111.1 identified by match to protein family HMM PF05168 YP_002250114.1 identified by match to protein family HMM PF01061 YP_002250117.1 identified by glimmer YP_002250118.1 identified by glimmer YP_002250119.1 identified by glimmer YP_002250123.1 identified by match to protein family HMM PF01934 YP_002250124.1 identified by match to protein family HMM PF01909 YP_002250125.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250126.1 identified by glimmer YP_002250130.1 identified by match to protein family HMM PF00005 YP_002250131.1 identified by match to protein family HMM PF06182 YP_002250132.1 identified by match to protein family HMM PF06182 YP_002250133.1 identified by match to protein family HMM PF00005 YP_002250135.1 identified by match to protein family HMM PF00535 YP_002250136.1 identified by match to protein family HMM PF01555 YP_002250137.1 identified by glimmer YP_002250138.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_002250139.1 identified by match to protein family HMM PF01909 YP_002250142.1 identified by match to protein family HMM PF00310 YP_002250143.1 identified by glimmer YP_002250144.1 identified by glimmer YP_002250145.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002250146.1 identified by match to protein family HMM PF04055 YP_002250147.1 identified by match to protein family HMM PF02230 YP_002250148.1 identified by glimmer YP_002250149.1 identified by match to protein family HMM PF00877 YP_002250150.1 identified by glimmer YP_002250151.1 identified by glimmer YP_002250154.1 identified by match to protein family HMM PF00037 YP_002250155.1 identified by glimmer YP_002250156.1 identified by match to protein family HMM PF01022 YP_002250157.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002250158.1 identified by match to protein family HMM PF02056 YP_002250159.1 identified by match to protein family HMM PF01557 YP_002250160.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002250161.1 identified by match to protein family HMM PF03060 YP_002250163.1 identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002250164.1 identified by glimmer YP_002250165.1 identified by glimmer YP_002250166.1 identified by glimmer YP_002250167.1 identified by match to protein family HMM PF00496 YP_002250168.1 identified by match to protein family HMM PF00528 YP_002250169.1 identified by match to protein family HMM PF00528 YP_002250170.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250171.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250172.1 identified by match to protein family HMM PF05592; match to protein family HMM PF08531 YP_002250173.1 identified by glimmer YP_002250174.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002250175.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_002250176.1 identified by match to protein family HMM PF00005 YP_002250177.1 identified by match to protein family HMM PF02653 YP_002250178.1 identified by match to protein family HMM PF00532 YP_002250179.1 identified by match to protein family HMM PF00532; match to protein family HMM TIGR02637 YP_002250180.1 identified by match to protein family HMM PF00005 YP_002250181.1 identified by match to protein family HMM PF02653 YP_002250182.1 identified by match to protein family HMM PF02653 YP_002250184.1 identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002250185.1 identified by match to protein family HMM PF00364 YP_002250186.1 identified by match to protein family HMM PF00198 YP_002250187.1 identified by match to protein family HMM PF08240 YP_002250188.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_002250189.1 identified by match to protein family HMM PF01261 YP_002250190.1 identified by match to protein family HMM PF00596 YP_002250191.1 identified by match to protein family HMM PF00106 YP_002250192.1 identified by match to protein family HMM PF01547 YP_002250193.1 identified by match to protein family HMM PF00528 YP_002250194.1 identified by match to protein family HMM PF00528 YP_002250195.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR02635 YP_002250196.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002250197.1 identified by match to protein family HMM PF01880; match to protein family HMM TIGR00332 YP_002250198.1 identified by match to protein family HMM PF00544 YP_002250199.1 identified by match to protein family HMM PF01547 YP_002250200.1 identified by match to protein family HMM PF00528 YP_002250201.1 identified by match to protein family HMM PF00528 YP_002250202.1 identified by match to protein family HMM PF02056 YP_002250204.1 identified by match to protein family HMM PF00294 YP_002250205.1 identified by match to protein family HMM PF01614; match to protein family HMM PF01978; match to protein family HMM PF08279; match to protein family HMM PF09339 YP_002250206.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01180 YP_002250207.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002250208.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002250209.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002250210.1 identified by glimmer YP_002250211.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002250212.1 identified by glimmer YP_002250214.1 identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_002250215.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002250216.1 identified by glimmer YP_002250219.1 identified by match to protein family HMM PF02769 YP_002250220.1 identified by match to protein family HMM PF03717 YP_002250223.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002250225.1 identified by glimmer YP_002250227.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_002250228.1 identified by match to protein family HMM PF01522 YP_002250229.1 identified by match to protein family HMM PF00722; match to protein family HMM PF02018 YP_002250230.1 identified by match to protein family HMM PF01906 YP_002250231.1 identified by glimmer YP_002250232.1 identified by match to protein family HMM PF03547 YP_002250233.1 identified by glimmer YP_002250234.1 identified by glimmer YP_002250235.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002250236.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002250237.1 identified by glimmer YP_002250238.1 identified by match to protein family HMM PF07690 YP_002250239.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002250240.1 identified by match to protein family HMM PF00232 YP_002250243.1 identified by match to protein family HMM PF01566 YP_002250245.1 identified by match to protein family HMM PF08291 YP_002250246.1 identified by glimmer YP_002250248.1 identified by match to protein family HMM PF07872 YP_002250249.1 identified by glimmer YP_002250251.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002250252.1 identified by match to protein family HMM PF04389 YP_002250253.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002250254.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002250255.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_002250256.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002250257.1 identified by match to protein family HMM PF01011 YP_002250258.1 identified by match to protein family HMM PF00106 YP_002250259.1 identified by glimmer YP_002250262.1 identified by match to protein family HMM PF07944 YP_002250263.1 identified by match to protein family HMM PF02449; match to protein family HMM PF08532; match to protein family HMM PF08533 YP_002250265.1 identified by match to protein family HMM PF01206 YP_002250266.1 identified by match to protein family HMM PF04143 YP_002250267.1 identified by match to protein family HMM PF02635 YP_002250268.1 identified by match to protein family HMM PF02635 YP_002250269.1 identified by match to protein family HMM PF04077; match to protein family HMM TIGR03011 YP_002250270.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002250273.1 identified by glimmer YP_002250275.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002250276.1 identified by match to protein family HMM PF00528 YP_002250277.1 identified by match to protein family HMM PF00528 YP_002250278.1 identified by match to protein family HMM PF00583 YP_002250279.1 identified by match to protein family HMM PF00704 YP_002250280.1 identified by match to protein family HMM PF00245 YP_002250282.1 identified by match to protein family HMM PF01451 YP_002250283.1 identified by match to protein family HMM PF01934 YP_002250284.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002250285.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002250286.1 identified by match to protein family HMM PF01523 YP_002250287.1 identified by match to protein family HMM PF01523 YP_002250288.1 identified by match to protein family HMM PF00248 YP_002250289.1 identified by match to protein family HMM PF02018 YP_002250290.1 identified by match to protein family HMM PF04060 YP_002250291.1 identified by match to protein family HMM PF07228 YP_002250292.1 identified by match to protein family HMM PF01257 YP_002250293.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_002250294.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_002250295.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002250296.1 identified by match to protein family HMM PF00005 YP_002250297.1 identified by match to protein family HMM PF00528 YP_002250299.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_002250300.1 identified by glimmer YP_002250301.1 identified by glimmer YP_002250302.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250303.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250304.1 identified by glimmer YP_002250306.1 identified by match to protein family HMM PF01306; match to protein family HMM PF03825; match to protein family HMM PF07690 YP_002250307.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002250308.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002250309.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002250310.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR03026 YP_002250311.1 identified by glimmer YP_002250312.1 identified by glimmer YP_002250313.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002250314.1 identified by glimmer YP_002250316.1 identified by match to protein family HMM PF00132 YP_002250320.1 identified by match to protein family HMM PF00534 YP_002250321.1 identified by match to protein family HMM PF00534 YP_002250322.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002250323.1 identified by match to protein family HMM PF02397 YP_002250324.1 identified by glimmer YP_002250325.1 identified by glimmer YP_002250328.1 identified by glimmer YP_002250329.1 identified by glimmer YP_002250330.1 identified by match to protein family HMM PF01909 YP_002250331.1 identified by match to protein family HMM PF05168 YP_002250332.1 identified by match to protein family HMM PF02563 YP_002250333.1 identified by match to protein family HMM PF02563 YP_002250334.1 identified by match to protein family HMM PF00561 YP_002250335.1 identified by match to protein family HMM PF02586 YP_002250336.1 identified by glimmer YP_002250337.1 identified by match to protein family HMM PF05547 YP_002250338.1 identified by glimmer YP_002250339.1 identified by match to protein family HMM PF01937 YP_002250340.1 identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549 YP_002250341.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002250342.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_002250343.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002250344.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002250345.1 identified by glimmer YP_002250346.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002250347.1 identified by match to protein family HMM PF01670 YP_002250348.1 identified by match to protein family HMM PF02156 YP_002250349.1 identified by match to protein family HMM PF00392 YP_002250350.1 identified by match to protein family HMM PF00005 YP_002250352.1 identified by match to protein family HMM PF00005 YP_002250353.1 identified by match to protein family HMM PF02687 YP_002250354.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002250355.1 identified by match to protein family HMM PF05738 YP_002250356.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02824; match to protein family HMM TIGR00231 YP_002250357.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002250358.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01325 YP_002250359.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250360.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250362.1 identified by match to protein family HMM PF00892 YP_002250364.1 identified by match to protein family HMM PF06845 YP_002250365.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_002250366.1 identified by match to protein family HMM PF06165 YP_002250367.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_002250368.1 identified by match to protein family HMM PF01055 YP_002250369.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_002250370.1 identified by match to protein family HMM PF07221 YP_002250372.1 identified by match to protein family HMM PF01986 YP_002250373.1 identified by match to protein family HMM PF01810 YP_002250376.1 identified by match to protein family HMM PF04041 YP_002250377.1 identified by match to protein family HMM PF02632 YP_002250378.1 identified by match to protein family HMM PF04024 YP_002250379.1 identified by match to protein family HMM PF04024 YP_002250381.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002250382.1 identified by match to protein family HMM PF00496 YP_002250383.1 identified by match to protein family HMM PF00528 YP_002250384.1 identified by match to protein family HMM PF00528 YP_002250385.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250386.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250387.1 identified by match to protein family HMM PF00150 YP_002250388.1 identified by match to protein family HMM PF00150 YP_002250389.1 identified by match to protein family HMM PF00150 YP_002250390.1 identified by glimmer YP_002250391.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250392.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250393.1 identified by match to protein family HMM PF03065 YP_002250395.1 identified by glimmer YP_002250396.1 identified by match to protein family HMM PF06114 YP_002250397.1 identified by match to protein family HMM PF01381 YP_002250398.1 identified by match to protein family HMM PF05343 YP_002250399.1 identified by match to protein family HMM PF02127; match to protein family HMM PF05343 YP_002250400.1 identified by match to protein family HMM PF01546; match to protein family HMM PF02127; match to protein family HMM PF05343 YP_002250401.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002250402.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002250403.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002250404.1 identified by glimmer YP_002250405.1 identified by match to protein family HMM PF00149 YP_002250406.1 identified by match to protein family HMM PF00325; match to protein family HMM PF00480; match to protein family HMM PF01022; match to protein family HMM PF08279 YP_002250407.1 identified by match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00420 YP_002250408.1 identified by glimmer YP_002250409.1 identified by glimmer YP_002250410.1 identified by match to protein family HMM PF00583 YP_002250411.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564 YP_002250412.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_002250413.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245 YP_002250414.1 identified by match to protein family HMM PF00218 YP_002250415.1 identified by match to protein family HMM PF00697 YP_002250416.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002250417.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_002250418.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002250419.1 identified by match to protein family HMM PF04961 YP_002250420.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00202 YP_002250421.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_002250422.1 identified by match to protein family HMM PF06745 YP_002250424.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002250425.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002250426.1 identified by match to protein family HMM PF01882 YP_002250429.1 identified by match to protein family HMM PF01351 YP_002250430.1 identified by match to protein family HMM PF00528 YP_002250431.1 identified by match to protein family HMM PF00528 YP_002250432.1 identified by match to protein family HMM PF01547 YP_002250434.1 identified by match to protein family HMM PF01075; match to protein family HMM PF04932 YP_002250435.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_002250436.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198 YP_002250437.1 identified by match to protein family HMM PF00702; match to protein family HMM PF01380; match to protein family HMM PF08645; match to protein family HMM TIGR00441; match to protein family HMM TIGR01549; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_002250438.1 identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002250439.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_002250440.1 identified by glimmer YP_002250441.1 identified by glimmer YP_002250442.1 identified by match to protein family HMM PF00535 YP_002250444.1 identified by match to protein family HMM PF02366; match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_002250445.1 identified by match to protein family HMM PF00515 YP_002250446.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002250447.1 identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370 YP_002250448.1 identified by match to protein family HMM PF00111 YP_002250449.1 identified by match to protein family HMM PF01208 YP_002250450.1 identified by glimmer YP_002250451.1 identified by match to protein family HMM PF01837 YP_002250452.1 identified by match to protein family HMM PF00037 YP_002250453.1 identified by match to protein family HMM PF04040 YP_002250456.1 identified by match to protein family HMM PF02687 YP_002250457.1 identified by match to protein family HMM TIGR01730 YP_002250459.1 identified by match to protein family HMM PF00005 YP_002250460.1 identified by glimmer YP_002250461.1 identified by match to protein family HMM PF01613 YP_002250462.1 identified by glimmer YP_002250463.1 identified by match to protein family HMM PF00580 YP_002250464.1 identified by match to protein family HMM PF01883 YP_002250465.1 identified by match to protein family HMM PF00072 YP_002250466.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_002250467.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_002250468.1 identified by match to protein family HMM PF04055 YP_002250469.1 identified by match to protein family HMM PF00892 YP_002250470.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_002250471.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551 YP_002250472.1 identified by match to protein family HMM PF02445; match to protein family HMM TIGR00550 YP_002250474.1 identified by glimmer YP_002250475.1 identified by match to protein family HMM PF06130 YP_002250477.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002250478.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00462; match to protein family HMM TIGR02187 YP_002250479.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002250480.1 identified by match to protein family HMM PF00248 YP_002250481.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_002250482.1 identified by match to protein family HMM PF07251 YP_002250483.1 identified by match to protein family HMM PF01957 YP_002250484.1 identified by glimmer YP_002250485.1 identified by match to protein family HMM PF00005 YP_002250486.1 identified by match to protein family HMM PF00528 YP_002250487.1 identified by match to protein family HMM PF03065 YP_002250488.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures YP_002250489.1 identified by match to protein family HMM PF05559 YP_002250490.1 identified by match to protein family HMM PF02643 YP_002250491.1 identified by match to protein family HMM PF00037 YP_002250492.1 identified by match to protein family HMM PF01523 YP_002250493.1 identified by match to protein family HMM PF01523 YP_002250494.1 identified by match to protein family HMM PF02915 YP_002250495.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_002250496.1 identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679; match to protein family HMM TIGR00574 YP_002250497.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002250498.1 identified by match to protein family HMM PF00483 YP_002250499.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_002250500.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002250501.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002250502.1 identified by match to protein family HMM PF01424 YP_002250503.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_002250505.1 identified by match to protein family HMM TIGR00678 YP_002250506.1 identified by match to protein family HMM PF04468 YP_002250507.1 identified by glimmer YP_002250508.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078 YP_002250509.1 identified by match to protein family HMM PF04748 YP_002250510.1 identified by match to protein family HMM PF00294 YP_002250511.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002250512.1 identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612 YP_002250513.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319 YP_002250514.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_002250515.1 identified by match to protein family HMM PF04232 YP_002250516.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_002250517.1 identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170 YP_002250518.1 identified by match to protein family HMM PF00265 YP_002250519.1 identified by match to protein family HMM PF07136 YP_002250520.1 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 YP_002250521.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_002250522.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002250523.1 identified by match to protein family HMM PF01451 YP_002250524.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_002250525.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002250526.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002250527.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072 YP_002250528.1 identified by glimmer YP_002250529.1 identified by match to protein family HMM PF04357 YP_002250530.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_002250531.1 identified by match to protein family HMM PF07244 YP_002250532.1 identified by match to protein family HMM PF03938 YP_002250533.1 identified by match to protein family HMM PF03938 YP_002250534.1 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 YP_002250535.1 identified by match to protein family HMM PF03331; match to protein family HMM TIGR00325 YP_002250536.1 identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750 YP_002250537.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01852 YP_002250538.1 identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215 YP_002250540.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002250541.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002250542.1 identified by match to protein family HMM PF07719 YP_002250543.1 identified by match to protein family HMM PF00005 YP_002250544.1 identified by glimmer YP_002250545.1 identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF09180; match to protein family HMM TIGR00408 YP_002250546.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_002250547.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_002250548.1 identified by match to protein family HMM PF06107 YP_002250549.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01472; match to protein family HMM TIGR01027 YP_002250550.1 identified by match to protein family HMM PF00005 YP_002250551.1 identified by match to protein family HMM PF02321 YP_002250552.1 identified by match to protein family HMM PF02321 YP_002250553.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002250554.1 identified by match to protein family HMM PF02687 YP_002250555.1 identified by glimmer YP_002250556.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_002250558.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002250560.1 identified by glimmer YP_002250561.1 identified by match to protein family HMM PF00730 YP_002250562.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355 YP_002250563.1 identified by match to protein family HMM PF02577 YP_002250564.1 identified by match to protein family HMM PF00892 YP_002250566.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002250567.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002250569.1 identified by match to protein family HMM PF03479 YP_002250570.1 identified by match to protein family HMM PF00392 YP_002250571.1 identified by match to protein family HMM PF01547 YP_002250572.1 identified by match to protein family HMM PF00528 YP_002250573.1 identified by match to protein family HMM PF00528 YP_002250574.1 identified by match to protein family HMM PF02018; match to protein family HMM PF07532; match to protein family HMM PF07745 YP_002250575.1 identified by match to protein family HMM PF00496 YP_002250576.1 identified by glimmer YP_002250577.1 identified by match to protein family HMM PF00528 YP_002250578.1 identified by match to protein family HMM PF00528 YP_002250579.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002250580.1 identified by match to protein family HMM PF00395 YP_002250581.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02032 YP_002250582.1 identified by match to protein family HMM PF00155 YP_002250583.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002250584.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002250585.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002250586.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002250588.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002250589.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002250590.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02533 YP_002250591.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002250592.1 identified by match to protein family HMM PF00482 YP_002250593.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002250594.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250595.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250597.1 identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_002250598.1 identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_002250599.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_002250600.1 identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM PF04851; match to protein family HMM TIGR00631 YP_002250601.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_002250602.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_002250603.1 identified by match to protein family HMM PF00480 YP_002250604.1 identified by glimmer YP_002250605.1 identified by glimmer YP_002250606.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_002250607.1 identified by match to protein family HMM PF01844 YP_002250608.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002250609.1 identified by match to protein family HMM PF01476 YP_002250610.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002250611.1 identified by match to protein family HMM PF03065; match to protein family HMM PF09210 YP_002250612.1 identified by match to protein family HMM PF03065; match to protein family HMM PF09094; match to protein family HMM PF09095 YP_002250613.1 identified by glimmer YP_002250614.1 identified by match to protein family HMM PF00459 YP_002250615.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002250616.1 identified by match to protein family HMM PF04008 YP_002250618.1 identified by glimmer YP_002250619.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002250620.1 identified by glimmer YP_002250621.1 identified by match to protein family HMM PF00670; match to protein family HMM PF02826; match to protein family HMM TIGR00936 YP_002250622.1 identified by match to protein family HMM PF04011 YP_002250623.1 metalloprotease YP_002250624.1 identified by match to protein family HMM PF00881 YP_002250625.1 identified by match to protein family HMM PF01734 YP_002250626.1 identified by match to protein family HMM PF07085 YP_002250627.1 identified by match to protein family HMM PF00571; match to protein family HMM PF02518 YP_002250628.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04060 YP_002250630.1 identified by match to protein family HMM PF07085 YP_002250631.1 identified by match to protein family HMM PF02811 YP_002250632.1 identified by match to protein family HMM PF01257 YP_002250633.1 identified by match to protein family HMM PF02518 YP_002250635.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_002250636.1 identified by match to protein family HMM PF05899; match to protein family HMM PF07883 YP_002250637.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_002250638.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_002250639.1 identified by match to protein family HMM PF01921; match to protein family HMM TIGR00467 YP_002250640.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367 YP_002250642.1 identified by match to protein family HMM PF04199 YP_002250643.1 identified by match to protein family HMM PF00534 YP_002250644.1 identified by glimmer YP_002250645.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694 YP_002250646.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00524 YP_002250647.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002250648.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457 YP_002250649.1 identified by match to protein family HMM PF01094 YP_002250650.1 identified by match to protein family HMM PF02653 YP_002250651.1 identified by match to protein family HMM PF02653 YP_002250652.1 identified by match to protein family HMM PF00005 YP_002250653.1 identified by match to protein family HMM PF00005 YP_002250654.1 identified by match to protein family HMM PF00571 YP_002250655.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_002250656.1 identified by match to protein family HMM PF02620 YP_002250657.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 YP_002250658.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_002250659.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002250660.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01830 YP_002250661.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 YP_002250662.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150 YP_002250663.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_002250664.1 identified by match to protein family HMM PF06470 YP_002250665.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002250666.1 identified by match to protein family HMM PF00583 YP_002250668.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_002250669.1 identified by match to protein family HMM PF01820; match to protein family HMM PF02655; match to protein family HMM PF07478; match to protein family HMM PF08443; match to protein family HMM TIGR01205 YP_002250670.1 identified by match to protein family HMM PF01479 YP_002250671.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002250672.1 identified by match to protein family HMM PF06935 YP_002250674.1 identified by match to protein family HMM PF03235 YP_002250675.1 identified by glimmer YP_002250676.1 identified by glimmer YP_002250677.1 identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348 YP_002250678.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002250679.1 identified by match to protein family HMM PF00534 YP_002250680.1 identified by match to protein family HMM PF00534 YP_002250681.1 identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_002250682.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002250683.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002250684.1 identified by match to protein family HMM PF00814 YP_002250685.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002250686.1 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184 YP_002250687.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002250688.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 YP_002250689.1 identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 YP_002250690.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002250691.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002250692.1 identified by match to protein family HMM PF07690 YP_002250693.1 identified by match to protein family HMM PF01169 YP_002250694.1 identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013 YP_002250695.1 identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; match to protein family HMM TIGR02388 YP_002250696.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002250697.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002250698.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_002250699.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002250700.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_002250701.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002250702.1 identified by match to protein family HMM PF00573 YP_002250703.1 identified by match to protein family HMM PF00276 YP_002250704.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002250705.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002250706.1 identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044 YP_002250707.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009 YP_002250708.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002250709.1 identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012 YP_002250710.1 identified by match to protein family HMM PF00366 YP_002250711.1 identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067 YP_002250712.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002250713.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002250714.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002250715.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002250716.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002250717.1 binds 5S rRNA along with protein L5 and L25 YP_002250718.1 identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 YP_002250719.1 identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071 YP_002250720.1 identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967 YP_002250721.1 identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 YP_002250722.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_002250723.1 identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008 YP_002250724.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002250725.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002250726.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002250727.1 identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 YP_002250728.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002250729.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002250730.1 identified by match to protein family HMM PF00005 YP_002250731.1 identified by match to protein family HMM PF00005 YP_002250732.1 identified by match to protein family HMM PF02361 YP_002250733.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_002250734.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002250735.1 identified by match to protein family HMM PF00380 YP_002250736.1 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296 YP_002250737.1 identified by match to protein family HMM PF04055 YP_002250738.1 identified by glimmer YP_002250739.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002250740.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_002250741.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_002250742.1 identified by match to protein family HMM PF00515 YP_002250743.1 identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344 YP_002250744.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_002250745.1 identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418 YP_002250746.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002250747.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250748.1 identified by glimmer YP_002250749.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250750.1 identified by glimmer YP_002250751.1 identified by glimmer YP_002250752.1 identified by match to protein family HMM PF05137 YP_002250754.1 identified by glimmer YP_002250755.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660 YP_002250756.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002250757.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002250758.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_002250759.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_002250760.1 identified by match to protein family HMM PF03780 YP_002250762.1 identified by glimmer YP_002250763.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_002250764.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204 YP_002250765.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002250766.1 identified by match to protein family HMM PF01513 YP_002250767.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002250768.1 identified by match to protein family HMM PF00293 YP_002250769.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_002250770.1 identified by match to protein family HMM PF01430 YP_002250771.1 identified by match to protein family HMM PF00497 YP_002250772.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002250773.1 identified by match to protein family HMM PF00005 YP_002250774.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507 YP_002250775.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002250776.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_002250777.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361 YP_002250778.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02153 YP_002250779.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356 YP_002250780.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_002250781.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250782.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250783.1 identified by match to protein family HMM PF00528 YP_002250784.1 identified by match to protein family HMM PF00528 YP_002250786.1 identified by glimmer YP_002250787.1 identified by glimmer YP_002250788.1 identified by glimmer YP_002250789.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002250790.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316 YP_002250791.1 identified by match to protein family HMM PF02583 YP_002250792.1 identified by glimmer YP_002250793.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_002250794.1 identified by match to protein family HMM PF07969 YP_002250795.1 identified by match to protein family HMM PF01475 YP_002250796.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_002250797.1 identified by match to protein family HMM PF07568 YP_002250798.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002250799.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 YP_002250800.1 identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585 YP_002250801.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002250802.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR03540 YP_002250803.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002250804.1 identified by match to protein family HMM PF01904 YP_002250805.1 identified by match to protein family HMM PF00006; match to protein family HMM PF07497; match to protein family HMM PF07498; match to protein family HMM TIGR00767 YP_002250807.1 identified by match to protein family HMM PF00149 YP_002250808.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002250809.1 identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 YP_002250810.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_002250811.1 identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382 YP_002250812.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422 YP_002250813.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_002250814.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_002250815.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_002250816.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01948 YP_002250817.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_002250818.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944 YP_002250819.1 identified by match to protein family HMM PF02424 YP_002250820.1 identified by match to protein family HMM PF07456 YP_002250821.1 identified by glimmer YP_002250822.1 identified by glimmer YP_002250823.1 identified by match to protein family HMM PF01551 YP_002250824.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002250825.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_002250826.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_002250827.1 identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128 YP_002250828.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002250829.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002250830.1 identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087 YP_002250831.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_002250832.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_002250833.1 identified by match to protein family HMM PF00953 YP_002250834.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002250835.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002250836.1 identified by match to protein family HMM TIGR02605 YP_002250838.1 identified by match to protein family HMM PF00480; match to protein family HMM PF01869 YP_002250839.1 identified by match to protein family HMM PF01066 YP_002250840.1 identified by glimmer YP_002250841.1 identified by match to protein family HMM PF00587 YP_002250842.1 identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070 YP_002250843.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069 YP_002250844.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_002250845.1 identified by match to protein family HMM PF00475 YP_002250846.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855 YP_002250847.1 identified by match to protein family HMM PF00977 YP_002250848.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002250849.1 identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456 YP_002250850.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002250851.1 identified by match to protein family HMM PF03668 YP_002250852.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002250853.1 identified by match to protein family HMM PF00162 YP_002250854.1 identified by match to protein family HMM PF03259 YP_002250855.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002250856.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002250857.1 identified by match to protein family HMM PF00496 YP_002250858.1 identified by match to protein family HMM PF00528 YP_002250859.1 identified by match to protein family HMM PF00528 YP_002250860.1 identified by match to protein family HMM PF03780 YP_002250861.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002250862.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851; match to protein family HMM TIGR00643 YP_002250863.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002250864.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002250866.1 identified by glimmer YP_002250867.1 identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 YP_002250868.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002250869.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002250870.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002250871.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_002250872.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002250873.1 identified by match to protein family HMM PF01580 YP_002250874.1 identified by match to protein family HMM PF02608 YP_002250875.1 identified by match to protein family HMM PF00005 YP_002250876.1 identified by match to protein family HMM PF02653 YP_002250877.1 identified by match to protein family HMM PF02653 YP_002250878.1 identified by match to protein family HMM PF01553 YP_002250879.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002250880.1 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 YP_002250881.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002250882.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_002250883.1 identified by match to protein family HMM PF01210; match to protein family HMM PF07479 YP_002250884.1 identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_002250885.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250886.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002250887.1 identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135 YP_002250888.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002250889.1 identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 YP_002250890.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_002250891.1 identified by match to protein family HMM PF00482 YP_002250892.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250893.1 identified by glimmer YP_002250894.1 identified by glimmer YP_002250895.1 identified by match to protein family HMM TIGR02532 YP_002250896.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250897.1 identified by glimmer YP_002250898.1 identified by match to protein family HMM PF05137 YP_002250899.1 identified by glimmer YP_002250900.1 identified by glimmer YP_002250901.1 identified by match to protein family HMM TIGR02532 YP_002250902.1 identified by glimmer YP_002250903.1 identified by glimmer YP_002250905.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250906.1 identified by glimmer YP_002250907.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250908.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002250909.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_002250910.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_002250911.1 identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_002250912.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00973 YP_002250913.1 identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; match to protein family HMM TIGR02083; match to protein family HMM TIGR02086 YP_002250914.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087 YP_002250915.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00169 YP_002250916.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977 YP_002250917.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00131 YP_002250918.1 identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR00209 YP_002250919.1 identified by glimmer YP_002250920.1 identified by match to protein family HMM PF02670; match to protein family HMM PF08436; match to protein family HMM TIGR00243 YP_002250921.1 identified by match to protein family HMM PF01148 YP_002250922.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_002250924.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_002250925.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 YP_002250926.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002250927.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002250928.1 identified by glimmer YP_002250929.1 identified by match to protein family HMM PF02576 YP_002250930.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953 YP_002250931.1 identified by match to protein family HMM PF04296 YP_002250932.1 identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 YP_002250933.1 identified by match to protein family HMM PF04456 YP_002250934.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002250935.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002250936.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_002250937.1 identified by match to protein family HMM PF01687; match to protein family HMM PF02224; match to protein family HMM PF06574; match to protein family HMM TIGR00017; match to protein family HMM TIGR00083 YP_002250938.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_002250939.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_002250940.1 identified by glimmer YP_002250941.1 identified by match to protein family HMM PF01590; match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_002250942.1 identified by match to protein family HMM PF00211; match to protein family HMM PF05226 YP_002250943.1 identified by glimmer YP_002250944.1 identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671 YP_002250946.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002250948.1 identified by glimmer YP_002250949.1 identified by match to protein family HMM PF04055 YP_002250950.1 identified by match to protein family HMM PF04055 YP_002250951.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002250953.1 identified by match to protein family HMM PF00383 YP_002250954.1 identified by match to protein family HMM PF03091 YP_002250955.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002250957.1 identified by match to protein family HMM PF04055 YP_002250958.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002250959.1 identified by match to protein family HMM PF06245 YP_002250960.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002250961.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002250962.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002250964.1 identified by match to protein family HMM PF02578 YP_002250965.1 identified by match to protein family HMM PF04055 YP_002250966.1 identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_002250967.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002250968.1 identified by glimmer YP_002250969.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179 YP_002250970.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082 YP_002250971.1 identified by match to protein family HMM PF03033; match to protein family HMM PF04101 YP_002250972.1 identified by match to protein family HMM PF01098 YP_002250973.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087 YP_002250974.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_002250975.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002250976.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085 YP_002250977.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002250978.1 identified by glimmer YP_002250979.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002250980.1 identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242 YP_002250981.1 identified by glimmer YP_002250982.1 identified by match to protein family HMM PF02591 YP_002250983.1 identified by glimmer YP_002250984.1 identified by glimmer YP_002250985.1 identified by glimmer YP_002250986.1 identified by glimmer YP_002250987.1 identified by glimmer YP_002250988.1 identified by glimmer YP_002250989.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_002250990.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002250992.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_002250993.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_002250994.1 identified by match to protein family HMM PF01951 YP_002250995.1 identified by match to protein family HMM PF06071 YP_002250996.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002250998.1 identified by match to protein family HMM PF02811 YP_002250999.1 identified by match to protein family HMM PF02195 YP_002251000.1 identified by match to protein family HMM PF00149 YP_002251001.1 catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate YP_002251002.1 identified by match to protein family HMM PF02566 YP_002251003.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002251005.1 identified by match to protein family HMM PF00348 YP_002251008.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_002251009.1 identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM PF09269; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729; match to protein family HMM TIGR03595 YP_002251010.1 involved in the peptidyltransferase reaction during translation YP_002251011.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002251012.1 identified by match to protein family HMM PF04015 YP_002251013.1 identified by match to protein family HMM PF01408 YP_002251014.1 identified by match to protein family HMM PF04246 YP_002251016.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002251017.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002251018.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002251019.1 identified by match to protein family HMM PF02590 YP_002251020.1 identified by match to protein family HMM PF03739 YP_002251021.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_002251022.1 identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 YP_002251023.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002251024.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002251025.1 identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032 YP_002251026.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002251027.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_002251028.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937 YP_002251029.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391 YP_002251030.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002251031.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002251032.1 identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_002251033.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002251034.1 identified by match to protein family HMM TIGR00613 YP_002251035.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126 YP_002251036.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650 YP_002251037.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_002251038.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002251039.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002251041.1 identified by glimmer YP_002251042.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002251043.1 identified by match to protein family HMM PF02562 YP_002251044.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002251045.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002251046.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046 YP_002251047.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331 YP_002251048.1 identified by match to protein family HMM PF01972 YP_002251049.1 identified by match to protein family HMM PF01694 YP_002251050.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002251051.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_002251052.1 identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 YP_002251054.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_002251055.1 identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722 YP_002251058.1 identified by match to protein family HMM PF05034; match to protein family HMM PF07476; match to protein family HMM TIGR01502 YP_002251059.1 identified by match to protein family HMM PF06368; match to protein family HMM TIGR01503 YP_002251060.1 identified by match to protein family HMM TIGR01319 YP_002251061.1 converts methylaspartate to L-glutamate YP_002251062.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343; match to protein family HMM PF07687; match to protein family HMM TIGR01883 YP_002251063.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_002251064.1 identified by match to protein family HMM PF01520 YP_002251065.1 identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 YP_002251066.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002251067.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002251068.1 identified by match to protein family HMM PF02706 YP_002251069.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761 YP_002251071.1 identified by match to protein family HMM PF03259 YP_002251072.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_002251073.1 identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_002251075.1 identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165 YP_002251076.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002251077.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002251078.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122 YP_002251079.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002251080.1 identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447 YP_002251081.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260 YP_002251082.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00191 YP_002251083.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_002251084.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 YP_002251085.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002251086.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002251087.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002251088.1 binds directly to 23S ribosomal RNA YP_002251089.1 identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_002251090.1 identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964 YP_002251091.1 identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023 YP_002251092.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002251093.1 identified by match to protein family HMM PF00575 YP_002251094.1 identified by glimmer YP_002251095.1 identified by match to protein family HMM PF04307 YP_002251096.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002251097.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02504 YP_002251098.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002251099.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483 YP_002251101.1 identified by match to protein family HMM PF01230 YP_002251102.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02482 YP_002251103.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_002251104.1 identified by match to protein family HMM TIGR00515 YP_002251105.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 YP_002251107.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_002251108.1 identified by match to protein family HMM PF01135; match to protein family HMM PF08241; match to protein family HMM TIGR00080 YP_002251109.1 identified by match to protein family HMM PF01564 YP_002251110.1 identified by match to protein family HMM PF00708 YP_002251111.1 identified by match to protein family HMM PF00580 YP_002251112.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215 YP_002251113.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002251114.1 identified by match to protein family HMM PF03775 YP_002251115.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423 YP_002251116.1 identified by glimmer YP_002251117.1 identified by match to protein family HMM PF04085 YP_002251118.1 functions in MreBCD complex in some organisms YP_002251119.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_002251120.1 identified by match to protein family HMM PF02588 YP_002251121.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002251122.1 identified by match to protein family HMM PF04230; match to protein family HMM TIGR03609 YP_002251123.1 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_002251124.1 identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 YP_002251125.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002251127.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002251128.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_002251129.1 identified by match to protein family HMM PF02675 YP_002251130.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877 YP_002251131.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_002251132.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878 YP_002251133.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_002251134.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736 YP_002251135.1 identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737 YP_002251136.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_002251137.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928 YP_002251138.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002251139.1 identified by match to protein family HMM PF00156 YP_002251140.1 identified by match to protein family HMM PF00293; match to protein family HMM PF00534 YP_002251141.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878; match to protein family HMM PF02880 YP_002251142.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_002251143.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392 YP_002251144.1 identified by match to protein family HMM PF01497 YP_002251145.1 identified by match to protein family HMM PF01032 YP_002251146.1 identified by match to protein family HMM PF00005 YP_002251147.1 identified by glimmer YP_002251148.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_002251149.1 identified by match to protein family HMM PF03793 YP_002251150.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_002251151.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00446; match to protein family HMM TIGR00563 YP_002251152.1 identified by match to protein family HMM PF04298 YP_002251153.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_002251154.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002251155.1 identified by match to protein family HMM TIGR00595 YP_002251156.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_002251157.1 Essential for recycling GMP and indirectly, cGMP YP_002251158.1 identified by match to protein family HMM PF04025 YP_002251160.1 identified by glimmer YP_002251161.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002251162.1 identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182 YP_002251163.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002251165.1 identified by match to protein family HMM PF00534 YP_002251166.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002251167.1 identified by match to protein family HMM PF01202 YP_002251168.1 identified by glimmer YP_002251169.1 identified by match to protein family HMM PF01564 YP_002251170.1 identified by match to protein family HMM PF02675 YP_002251171.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002251172.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002251173.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_002251175.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002251176.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_002251177.1 identified by match to protein family HMM PF02616 YP_002251178.1 identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233 YP_002251179.1 identified by match to protein family HMM PF02163 YP_002251180.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_002251181.1 identified by match to protein family HMM PF01676; match to protein family HMM PF08342; match to protein family HMM TIGR01696 YP_002251182.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_002251183.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002251184.1 identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151 YP_002251185.1 identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453 YP_002251186.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_002251187.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002251188.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002251189.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002251190.1 identified by match to protein family HMM PF00217 YP_002251191.1 identified by match to protein family HMM PF02151 YP_002251192.1 identified by match to protein family HMM PF01174; match to protein family HMM PF07685 YP_002251193.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002251194.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002251195.1 identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 YP_002251197.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002251199.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 YP_002251200.1 identified by match to protein family HMM PF06725; match to protein family HMM PF07501 YP_002251201.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755 YP_002251202.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00154 YP_002251203.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127 YP_002251204.1 identified by match to protein family HMM PF05343 YP_002251205.1 identified by match to protein family HMM PF02568; match to protein family HMM PF03054; match to protein family HMM PF05670 YP_002251206.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743 YP_002251207.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002251208.1 identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309 YP_002251209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002251210.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874 YP_002251211.1 identified by match to protein family HMM PF01990 YP_002251212.1 identified by glimmer YP_002251214.1 identified by match to protein family HMM PF00137 YP_002251215.1 identified by match to protein family HMM PF01496 YP_002251217.1 required for 70S ribosome assembly YP_002251218.1 identified by match to protein family HMM PF01875 YP_002251219.1 identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 YP_002251220.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002251221.1 identified by match to protein family HMM PF00639 YP_002251222.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_002251223.1 identified by match to protein family HMM PF00216 YP_002251224.1 identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR00528 YP_002251225.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_002251226.1 identified by match to protein family HMM PF02347 YP_002251227.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002251228.1 identified by match to protein family HMM PF04055 YP_002251229.1 identified by match to protein family HMM PF04055 YP_002251230.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002251232.1 identified by glimmer YP_002251233.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002251234.1 identified by match to protein family HMM PF01134; match to protein family HMM TIGR00137 YP_002251235.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 YP_002251236.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002251237.1 identified by match to protein family HMM PF00860 YP_002251238.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_002251239.1 identified by match to protein family HMM PF02021 YP_002251240.1 identified by match to protein family HMM PF01351 YP_002251241.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002251242.1 identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024 YP_002251243.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002251244.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_002251245.1 identified by match to protein family HMM PF00013 YP_002251246.1 identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002 YP_002251247.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002251248.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837 YP_002251249.1 identified by match to protein family HMM PF01022 YP_002251250.1 identified by match to protein family HMM PF04474 YP_002251251.1 identified by match to protein family HMM PF06555 YP_002251252.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888 YP_002251253.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_002251255.1 identified by glimmer YP_002251256.1 identified by glimmer YP_002251257.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_002251259.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611 YP_002251260.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_002251261.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_002251262.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002251263.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002251264.1 identified by match to protein family HMM PF01458 YP_002251265.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_002251267.1 identified by match to protein family HMM PF01022 YP_002251268.1 identified by glimmer YP_002251269.1 identified by match to protein family HMM PF00011 YP_002251270.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002251271.1 identified by glimmer YP_002251272.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002251273.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396 YP_002251274.1 identified by glimmer YP_002251275.1 identified by match to protein family HMM PF01061 YP_002251276.1 identified by match to protein family HMM PF00005 YP_002251277.1 identified by match to protein family HMM PF01475 YP_002251278.1 identified by match to protein family HMM PF04023 YP_002251279.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07670; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_002251280.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_002251281.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037 YP_002251282.1 identified by match to protein family HMM PF00175 YP_002251283.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_002251284.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670 YP_002251285.1 identified by match to protein family HMM PF00156 YP_002251286.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 YP_002251287.1 identified by match to protein family HMM PF01738 YP_002251288.1 identified by match to protein family HMM PF04945 YP_002251289.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002251290.1 identified by match to protein family HMM PF03266 YP_002251291.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002251292.1 identified by match to protein family HMM PF01547 YP_002251293.1 identified by glimmer YP_002251294.1 identified by match to protein family HMM PF00150 YP_002251295.1 identified by glimmer YP_002251296.1 identified by match to protein family HMM PF00528 YP_002251297.1 identified by match to protein family HMM PF00528 YP_002251298.1 identified by glimmer YP_002251299.1 identified by match to protein family HMM PF01436 YP_002251300.1 identified by match to protein family HMM PF00528 YP_002251301.1 identified by match to protein family HMM PF00528 YP_002251302.1 identified by match to protein family HMM PF01547 YP_002251303.1 identified by match to protein family HMM PF01547 YP_002251304.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002251305.1 identified by match to protein family HMM PF00300 YP_002251306.1 identified by match to protein family HMM PF02861 YP_002251308.1 identified by match to protein family HMM PF02811 YP_002251309.1 identified by match to protein family HMM PF01368; match to protein family HMM TIGR00644 YP_002251310.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966 YP_002251311.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 YP_002251312.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_002251313.1 identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_002251314.1 identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113 YP_002251315.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669 YP_002251317.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002251318.1 identified by match to protein family HMM PF02677 YP_002251319.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728; match to protein family HMM TIGR00635 YP_002251320.1 identified by match to protein family HMM PF01330; match to protein family HMM TIGR00084 YP_002251321.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002251322.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002251323.1 identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002251324.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002251325.1 identified by match to protein family HMM PF07009 YP_002251326.1 identified by match to protein family HMM PF00881 YP_002251327.1 identified by match to protein family HMM PF01380 YP_002251328.1 identified by match to protein family HMM PF02681 YP_002251329.1 identified by match to protein family HMM PF00534 YP_002251330.1 identified by glimmer YP_002251331.1 identified by match to protein family HMM PF01935 YP_002251332.1 identified by match to protein family HMM PF00149 YP_002251334.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002251335.1 identified by glimmer YP_002251336.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_002251337.1 identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; match to protein family HMM TIGR02086 YP_002251338.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087 YP_002251339.1 identified by match to protein family HMM PF00465 YP_002251340.1 identified by match to protein family HMM PF00132 YP_002251341.1 identified by match to protein family HMM PF02219 YP_002251343.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_002251344.1 identified by match to protein family HMM PF01268 YP_002251345.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002251346.1 identified by match to protein family HMM PF00881 YP_002251347.1 identified by match to protein family HMM PF01261 YP_002251348.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842 YP_002251349.1 identified by match to protein family HMM PF02653 YP_002251350.1 identified by match to protein family HMM PF00532 YP_002251351.1 identified by match to protein family HMM PF00005 YP_002251354.1 identified by match to protein family HMM PF00331 YP_002251355.1 identified by match to protein family HMM PF07446 YP_002251356.1 identified by match to protein family HMM PF00924 YP_002251357.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_002251358.1 identified by match to protein family HMM PF03351 YP_002251359.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002251360.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002251361.1 identified by match to protein family HMM PF02126 YP_002251362.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349 YP_002251363.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_002251364.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002251365.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_002251366.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_002251367.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_002251368.1 identified by match to protein family HMM PF01964 YP_002251369.1 identified by match to protein family HMM PF08543 YP_002251371.1 identified by match to protein family HMM PF00149 YP_002251372.1 identified by glimmer YP_002251373.1 identified by match to protein family HMM PF02653 YP_002251374.1 identified by match to protein family HMM PF00005 YP_002251375.1 identified by match to protein family HMM PF00532 YP_002251376.1 identified by match to protein family HMM PF00079 YP_002251377.1 identified by match to protein family HMM PF02065 YP_002251378.1 identified by match to protein family HMM PF02597 YP_002251379.1 identified by match to protein family HMM PF01171 YP_002251380.1 identified by match to protein family HMM PF01398 YP_002251382.1 identified by match to protein family HMM PF00128 YP_002251383.1 identified by match to protein family HMM PF01869 YP_002251384.1 identified by match to protein family HMM PF02056 YP_002251385.1 identified by match to protein family HMM PF02775; match to protein family HMM TIGR02177 YP_002251386.1 identified by match to protein family HMM PF01558; match to protein family HMM PF01855 YP_002251387.1 identified by match to protein family HMM PF00480 YP_002251388.1 identified by match to protein family HMM PF01297 YP_002251389.1 identified by match to protein family HMM PF00005 YP_002251390.1 identified by match to protein family HMM PF00950 YP_002251391.1 identified by match to protein family HMM PF00480 YP_002251392.1 identified by match to protein family HMM PF01988 YP_002251393.1 identified by match to protein family HMM PF01512 YP_002251394.1 identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958 YP_002251395.1 identified by match to protein family HMM PF00497; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002251397.1 identified by match to protein family HMM PF00702 YP_002251398.1 identified by glimmer YP_002251399.1 identified by match to protein family HMM PF02826 YP_002251400.1 identified by match to protein family HMM PF01406; match to protein family HMM PF09334; match to protein family HMM TIGR00435 YP_002251401.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002251402.1 identified by match to protein family HMM PF01261 YP_002251403.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002251404.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002251405.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_002251406.1 identified by match to protein family HMM PF07690 YP_002251407.1 identified by glimmer YP_002251408.1 identified by match to protein family HMM PF02018 YP_002251409.1 identified by match to protein family HMM PF00496 YP_002251410.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251411.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251412.1 identified by match to protein family HMM PF00528 YP_002251413.1 identified by match to protein family HMM PF00528 YP_002251414.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002251416.1 identified by match to protein family HMM PF04055 YP_002251417.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002251418.1 identified by match to protein family HMM PF01208 YP_002251419.1 identified by match to protein family HMM PF07477; match to protein family HMM PF07488 YP_002251420.1 identified by match to protein family HMM PF00753 YP_002251421.1 identified by match to protein family HMM TIGR02605 YP_002251422.1 identified by match to protein family HMM PF00037 YP_002251423.1 identified by match to protein family HMM PF01661 YP_002251424.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251425.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251426.1 identified by match to protein family HMM PF00528 YP_002251427.1 identified by match to protein family HMM PF00528 YP_002251428.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002251429.1 identified by match to protein family HMM PF00496 YP_002251430.1 identified by match to protein family HMM PF04055 YP_002251432.1 identified by match to protein family HMM PF00534 YP_002251435.1 identified by match to protein family HMM PF00596 YP_002251436.1 identified by match to protein family HMM PF06964 YP_002251437.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002251438.1 identified by match to protein family HMM PF02018 YP_002251439.1 identified by match to protein family HMM PF00528 YP_002251440.1 identified by match to protein family HMM PF00528 YP_002251442.1 identified by match to protein family HMM PF04616 YP_002251443.1 identified by match to protein family HMM PF01547 YP_002251444.1 identified by match to protein family HMM PF00528 YP_002251445.1 identified by match to protein family HMM PF00528 YP_002251446.1 identified by match to protein family HMM PF01547 YP_002251447.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002251448.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002251449.1 identified by match to protein family HMM PF06050 YP_002251450.1 identified by match to protein family HMM PF06050 YP_002251451.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01234 YP_002251452.1 identified by match to protein family HMM PF02056 YP_002251453.1 identified by match to protein family HMM PF03547 YP_002251454.1 identified by match to protein family HMM PF01761 YP_002251455.1 identified by match to protein family HMM PF00532; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002251456.1 identified by match to protein family HMM PF00532; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_002251457.1 identified by match to protein family HMM PF00465 YP_002251458.1 identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110 YP_002251459.1 identified by match to protein family HMM PF01717; match to protein family HMM PF08267 YP_002251460.1 catalyzes the formation of methionine from methylcobalamin and homocysteine YP_002251461.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002251462.1 identified by match to protein family HMM PF07973 YP_002251463.1 identified by match to protein family HMM PF00076 YP_002251464.1 identified by glimmer YP_002251465.1 identified by match to protein family HMM PF07690 YP_002251466.1 identified by match to protein family HMM PF00005 YP_002251467.1 identified by match to protein family HMM PF02361 YP_002251469.1 identified by match to protein family HMM PF01891 YP_002251470.1 identified by match to protein family HMM PF01402; match to protein family HMM PF08753 YP_002251471.1 identified by match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_002251472.1 identified by match to protein family HMM PF00753 YP_002251473.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002251474.1 identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_002251475.1 identified by match to protein family HMM PF04290 YP_002251476.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_002251477.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002251478.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002251479.1 identified by glimmer YP_002251480.1 identified by glimmer YP_002251481.1 identified by glimmer YP_002251482.1 identified by match to protein family HMM PF01995; match to protein family HMM PF08461 YP_002251483.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_002251484.1 identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM PF08443; match to protein family HMM TIGR01369 YP_002251485.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 YP_002251486.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_002251487.1 identified by match to protein family HMM PF01960; match to protein family HMM TIGR00120 YP_002251488.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850 YP_002251489.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002251490.1 identified by match to protein family HMM PF00498 YP_002251491.1 identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF05226 YP_002251492.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_002251493.1 identified by match to protein family HMM PF07690 YP_002251494.1 identified by match to protein family HMM PF03547 YP_002251495.1 identified by match to protein family HMM PF03600; match to protein family HMM PF04165 YP_002251496.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002251498.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_002251499.1 identified by match to protein family HMM PF04977 YP_002251500.1 identified by match to protein family HMM PF00633; match to protein family HMM PF04055 YP_002251501.1 identified by match to protein family HMM PF00232 YP_002251502.1 identified by match to protein family HMM PF04041 YP_002251503.1 identified by match to protein family HMM PF07998 YP_002251504.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02837 YP_002251505.1 identified by glimmer YP_002251506.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094 YP_002251507.1 identified by match to protein family HMM PF00480; match to protein family HMM PF08279 YP_002251509.1 identified by match to protein family HMM PF00248 YP_002251510.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002251511.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002251512.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002251513.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362 YP_002251514.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_002251515.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_002251516.1 identified by glimmer YP_002251517.1 identified by match to protein family HMM PF08308 YP_002251518.1 identified by match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002251519.1 identified by match to protein family HMM PF01676; match to protein family HMM TIGR00306 YP_002251520.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_002251521.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_002251522.1 identified by glimmer YP_002251523.1 identified by glimmer YP_002251524.1 identified by glimmer YP_002251527.1 identified by match to protein family HMM PF00210; match to protein family HMM PF02915 YP_002251528.1 identified by match to protein family HMM PF07685 YP_002251529.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002251530.1 catalyzes the magnesium and ATP-dependent positive supercoiling of DNA; contains helicase and topoisomerase domains YP_002251531.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611 YP_002251532.1 identified by match to protein family HMM PF01025 YP_002251533.1 identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_002251534.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349 YP_002251536.1 identified by glimmer YP_002251537.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498 YP_002251538.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002251539.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002251540.1 identified by match to protein family HMM PF07892 YP_002251541.1 identified by glimmer YP_002251542.1 identified by glimmer YP_002251543.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002251544.1 identified by match to protein family HMM PF00485 YP_002251545.1 identified by glimmer YP_002251546.1 identified by match to protein family HMM PF00166 YP_002251547.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_002251548.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_002251549.1 identified by match to protein family HMM PF01261 YP_002251550.1 identified by glimmer YP_002251551.1 identified by match to protein family HMM PF02572 YP_002251552.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002251553.1 identified by match to protein family HMM PF00266 YP_002251554.1 identified by match to protein family HMM PF00132 YP_002251555.1 identified by match to protein family HMM PF04519 YP_002251556.1 identified by match to protein family HMM PF01551 YP_002251560.1 identified by match to protein family HMM PF01841 YP_002251561.1 identified by match to protein family HMM PF01882 YP_002251562.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002251564.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002251565.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002251567.1 identified by match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871 YP_002251568.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002251569.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002251570.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002251571.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002251572.1 identified by match to protein family HMM PF00440 YP_002251573.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002251574.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188 YP_002251575.1 identified by match to protein family HMM PF01061 YP_002251577.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002251578.1 identified by match to protein family HMM PF01590; match to protein family HMM PF01966 YP_002251579.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002251580.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002251581.1 identified by glimmer YP_002251582.1 identified by glimmer YP_002251583.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002251584.1 identified by match to protein family HMM PF00535 YP_002251585.1 identified by match to protein family HMM PF01148; match to protein family HMM PF02660 YP_002251586.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002251588.1 identified by glimmer YP_002251589.1 identified by match to protein family HMM PF02574 YP_002251590.1 plays a role in hydrogenase nickel cofactor insertion YP_002251591.1 identified by match to protein family HMM PF01656 YP_002251592.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF04879 YP_002251593.1 identified by match to protein family HMM PF01058 YP_002251594.1 identified by match to protein family HMM PF00374 YP_002251596.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_002251597.1 identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837 YP_002251598.1 identified by match to protein family HMM TIGR01909 YP_002251599.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_002251600.1 identified by match to protein family HMM PF01924 YP_002251601.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_002251602.1 identified by match to protein family HMM PF03422; match to protein family HMM PF04616 YP_002251603.1 identified by match to protein family HMM PF01229 YP_002251606.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_002251607.1 identified by match to protein family HMM PF01061 YP_002251608.1 identified by match to protein family HMM PF01061 YP_002251609.1 identified by match to protein family HMM PF00005 YP_002251610.1 identified by match to protein family HMM PF04556 YP_002251611.1 identified by match to protein family HMM PF01170; match to protein family HMM PF01555 YP_002251612.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002251615.1 identified by glimmer YP_002251616.1 identified by glimmer YP_002251617.1 identified by glimmer YP_002251618.1 identified by glimmer YP_002251619.1 identified by glimmer YP_002251620.1 identified by match to protein family HMM PF06182 YP_002251621.1 identified by match to protein family HMM PF06182 YP_002251622.1 identified by match to protein family HMM PF01909 YP_002251623.1 identified by match to protein family HMM PF01934 YP_002251624.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_002251625.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002251626.1 identified by glimmer YP_002251627.1 identified by glimmer YP_002251628.1 identified by glimmer YP_002251629.1 identified by match to protein family HMM PF01909 YP_002251630.1 identified by match to protein family HMM PF01934 YP_002251631.1 identified by glimmer YP_002251632.1 identified by glimmer YP_002251633.1 identified by glimmer YP_002251634.1 identified by glimmer YP_002251636.1 identified by match to protein family HMM PF00005 YP_002251637.1 identified by match to protein family HMM PF04055 YP_002251638.1 identified by match to protein family HMM PF04055 YP_002251639.1 identified by glimmer YP_002251640.1 identified by match to protein family HMM PF01909 YP_002251641.1 identified by match to protein family HMM PF01934 YP_002251642.1 identified by glimmer YP_002251645.1 identified by glimmer YP_002251646.1 identified by glimmer YP_002251648.1 identified by glimmer YP_002251649.1 identified by glimmer YP_002251650.1 identified by match to protein family HMM PF00654 YP_002251651.1 identified by match to protein family HMM PF02673 YP_002251652.1 identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 YP_002251653.1 identified by match to protein family HMM PF01424 YP_002251654.1 identified by match to protein family HMM PF02096 YP_002251655.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002251656.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_002251657.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002251658.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM PF04095 YP_002251659.1 identified by match to protein family HMM PF00857 YP_002251660.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_002251661.1 identified by match to protein family HMM PF01139 YP_002251662.1 identified by glimmer YP_002251663.1 identified by match to protein family HMM PF07968 YP_002251664.1 identified by match to protein family HMM PF04309 YP_002251665.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_002251666.1 identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039 YP_002251667.1 identified by match to protein family HMM PF00231 YP_002251668.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002251669.1 identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144 YP_002251670.1 identified by match to protein family HMM PF00137 YP_002251671.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131 YP_002251672.1 identified by glimmer YP_002251674.1 identified by match to protein family HMM PF00588 YP_002251675.1 identified by match to protein family HMM PF02637 YP_002251677.1 identified by match to protein family HMM PF00850 YP_002251678.1 identified by match to protein family HMM PF01205 YP_002251679.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002251680.1 identified by match to protein family HMM PF00561 YP_002251681.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002251682.1 identified by match to protein family HMM PF00301 YP_002251683.1 identified by glimmer YP_002251684.1 identified by match to protein family HMM PF03739 YP_002251685.1 identified by match to protein family HMM PF03968 YP_002251686.1 identified by glimmer YP_002251687.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_002251689.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002251690.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002251692.1 identified by match to protein family HMM PF00535 YP_002251693.1 identified by match to protein family HMM PF02056 YP_002251694.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251695.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251696.1 identified by match to protein family HMM PF00528 YP_002251697.1 identified by match to protein family HMM PF00528 YP_002251698.1 identified by match to protein family HMM PF00496 YP_002251699.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002251702.1 identified by glimmer YP_002251703.1 identified by match to protein family HMM PF00465 YP_002251705.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002251706.1 identified by match to protein family HMM PF03551 YP_002251707.1 identified by match to protein family HMM PF01055 YP_002251708.1 identified by match to protein family HMM PF00754 YP_002251709.1 identified by match to protein family HMM PF00528 YP_002251710.1 identified by match to protein family HMM PF00528 YP_002251711.1 identified by match to protein family HMM PF01547 YP_002251712.1 identified by glimmer YP_002251713.1 identified by glimmer YP_002251714.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002251715.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002251716.1 identified by match to protein family HMM PF01435 YP_002251717.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM PF06508; match to protein family HMM TIGR00552 YP_002251718.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002251720.1 identified by glimmer YP_002251721.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_002251722.1 identified by match to protein family HMM PF01523 YP_002251723.1 identified by match to protein family HMM PF01523 YP_002251724.1 identified by match to protein family HMM PF00011; match to protein family HMM PF04969 YP_002251725.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002251726.1 identified by glimmer YP_002251728.1 identified by glimmer YP_002251729.1 identified by match to protein family HMM PF02417 YP_002251730.1 identified by match to protein family HMM PF02417 YP_002251732.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002251733.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002251734.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002251735.1 identified by match to protein family HMM PF00106 YP_002251737.1 identified by match to protein family HMM PF07690 YP_002251738.1 identified by match to protein family HMM PF03009 YP_002251739.1 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites YP_002251740.1 identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230 YP_002251741.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_002251742.1 identified by glimmer YP_002251746.1 identified by match to protein family HMM PF01656 YP_002251747.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002251748.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08448; match to protein family HMM TIGR00254 YP_002251749.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002251750.1 Converts isocitrate to alpha ketoglutarate YP_002251751.1 identified by glimmer YP_002251752.1 identified by match to protein family HMM PF00496 YP_002251753.1 identified by match to protein family HMM PF00528 YP_002251754.1 identified by match to protein family HMM PF00528 YP_002251755.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002251756.1 identified by match to protein family HMM PF00005 YP_002251757.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002251758.1 identified by glimmer YP_002251759.1 identified by match to protein family HMM PF04015 YP_002251760.1 identified by match to protein family HMM PF00728 YP_002251761.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002251764.1 identified by glimmer YP_002251765.1 identified by match to protein family HMM PF00497; match to protein family HMM PF01590; match to protein family HMM PF01966 YP_002251767.1 identified by match to protein family HMM PF01168 YP_002251768.1 identified by match to protein family HMM PF00892 YP_002251769.1 identified by glimmer YP_002251771.1 identified by glimmer YP_002251772.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002251774.1 identified by glimmer YP_002251775.1 identified by match to protein family HMM PF00092 YP_002251776.1 identified by match to protein family HMM PF00457; match to protein family HMM PF03422 YP_002251777.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002251778.1 identified by match to protein family HMM PF01980; match to protein family HMM PF02663; match to protein family HMM TIGR00104 YP_002251779.1 identified by match to protein family HMM PF00248 YP_002251780.1 identified by match to protein family HMM PF00005 YP_002251781.1 identified by match to protein family HMM PF01032; match to protein family HMM PF02653 YP_002251782.1 identified by match to protein family HMM PF01497 YP_002251783.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00989 YP_002251784.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_002251785.1 identified by glimmer YP_002251786.1 identified by glimmer YP_002251787.1 identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399 YP_002251788.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_002251789.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002251790.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_002251791.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 YP_002251792.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179 YP_002251793.1 identified by match to protein family HMM PF01855; match to protein family HMM PF02780 YP_002251794.1 identified by match to protein family HMM PF02775 YP_002251795.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_002251796.1 identified by match to protein family HMM PF05448 YP_002251797.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002251798.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002251799.1 identified by glimmer