-- dump date   	20250216_235328
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NZ_CP016033.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP016033.1.REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed.REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: DescriptionREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing andREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assemblyREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NRREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NRREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NRREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus ofREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, AustralianREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NRREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: FreshwaterREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pondREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: FreshwaterREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophicREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of theREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, AustralianREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?CREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bpREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kitREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 readsREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (PacificREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platformREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBioREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly processREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver softwareREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly qualityREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scoresREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (PacificREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: NegativeREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocciREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degCREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobicREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-livingREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reportedREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missingREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBioREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: FullREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0xREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeqREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9 Pseudo Genes (incomplete)         :: 7 of 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9 Pseudo Genes (incomplete)         :: 7 of 9 Pseudo Genes (internal stop)      :: 0 of 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9 Pseudo Genes (incomplete)         :: 7 of 9 Pseudo Genes (internal stop)      :: 0 of 9 Pseudo Genes (multiple problems)  :: 4 of 9REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9 Pseudo Genes (incomplete)         :: 7 of 9 Pseudo Genes (internal stop)      :: 0 of 9 Pseudo Genes (multiple problems)  :: 4 of 9 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP016033.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Ends of genome not confirmed. ##MIGS:3.0-Data-START## Item                  :: Description Submitted_to_insdc    :: CP016033 investigation_type    :: bacteria_archaea project_name          :: Porphyrobacter genome sequencing and                          assembly lat_lon               :: NR Depth                 :: NR Alt_elev              :: NR geo_loc_name          :: Eutrophic freshwater pond on the campus of                          the University of Queensland, Australian collection_date       :: NR biome                 :: Freshwater feature               :: Eutrophic freshwater pond material              :: Freshwater env_package           :: Water collected from a eutrophic                          freshwater pond on the campus of the                          University of Queensland, Australian ref_biomaterial       :: PMID: 8427804 isol_growth_condt     :: LB medium at 28?C num_replicons         :: 1 Estimated_size        :: 3,090,363 bp Nucl_acid_ext         :: Qiagen DNA extraction kit Lib_reads_seqd        :: 48,527 reads Lib_const_meth        :: The large smrtbell gDNA protocol (Pacific                          Biosciences, USA) seq_meth              :: A pacbio RS II platform Assembly method       :: De novo assembled using the PacBio                          hierarchical genome assembly process                          (HGAP)/Quiver software Estimated error rate  :: 99.99 % (average reference consensus) Method of calculation :: Estimation from HGAP Assembly quality                          scores Assembly_name         :: HGAP Assembly version 2 (Pacific                          Biosciences, USA) finishing_strategy    :: Complete, 203x, 1 contigs (one chromosome) Type strain           :: DSM 9434 Gram staining         :: Negative Cell shape            :: Rods or cocci Motility              :: Motile Sporulation           :: Nonsporulating Temperature range     :: 10-37 degC rel_to_oxygen         :: Strictly aerobic biotic_relationship   :: Free-living Pathogenicity         :: Not reported assembly              :: missing ##MIGS:3.0-Data-END## ##Genome-Assembly-Data-START## Assembly Date          :: 23-MAY-2016 Assembly Method        :: HGAP Assembly v. 2.0 Assembly Name          :: DSM9434_PacBio Genome Representation  :: Full Expected Final Version :: Yes Genome Coverage        :: 200.0x Sequencing Technology  :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 03/04/2024 11:37:39 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,932 CDSs (total)                      :: 2,875 Genes (coding)                    :: 2,866 CDSs (with protein)               :: 2,866 Genes (RNA)                       :: 57 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 47 ncRNAs                            :: 4 Pseudo Genes (total)              :: 9 CDSs (without protein)            :: 9 Pseudo Genes (ambiguous residues) :: 0 of 9 Pseudo Genes (frameshifted)       :: 6 of 9 Pseudo Genes (incomplete)         :: 7 of 9 Pseudo Genes (internal stop)      :: 0 of 9 Pseudo Genes (multiple problems)  :: 4 of 9 ##Genome-Annotation-Data-END## COMPLETENESS: full length.