-- dump date   	20140619_081952
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
5585648	transposase, IS21 family, degenerate; this region contains one or more premature stops and/or frameshifts
5585681	IS21, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts
5585682	transposase, IS110 family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAN78751.1
5585627	IS911, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts
5585704	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P24205; match to protein family HMM PF03279
5585693	IS66 family element, transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03050
5585699	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
5585667	transposase, IS21 family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P15025; match to protein family HMM PF00665
5585659	IS3, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts
5585689	putative fimbrial usher protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00577
5585638	IS91, transposase, internal deletion; this region contains one or more premature stops and/or frameshifts
5585631	IS91, transposase, internal deletion; this region contains one or more premature stops and/or frameshifts
5585663	IS630, transposase, degenerate; this region contains one or more premature stops and/or frameshifts
5585698	IS3, transposase orfA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P59445
5585706	IS3, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P05822; match to protein family HMM PF00665
5585641	IS3, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P05822; match to protein family HMM PF00665
5585650	IS1, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03400
5585657	IS3, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P05822; match to protein family HMM PF00665
5585655	IS91, transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF04986
5585757	transposase, IS481 family, degenerate; this region contains one or more premature stops and/or frameshifts
5585811	IS1, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03400
5585766	transposase, IS3 family, degenerate; this region contains one or more premature stops and/or frameshifts
5585760	transposase, IS1111 family, degenerate; this region contains one or more premature stops and/or frameshifts
5585774	putative pilJ protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAT07436.1
5585778	IS629, transposase orfB, interruption-N; This gene is disrupted by the insertion of a group II intron.
5585785	This gene is disrupted by the insertion of a group II intron.; IS629, transposase orfB, interruption-C; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00665
5585754	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer; putative
5585820	IS629, transposase orfB, interruption-N; This gene is disrupted by the insertion of a group II intron.
5585865	IS629, transposase orfB, interruption-C; This gene is disrupted by the insertion of a group II intron.; identified by match to protein family HMM PF00665
5585889	IS629, transposase orfB, interruption-C; This gene is disrupted by the insertion of a group II intron.; identified by match to protein family HMM PF00665
5585846	IS629, transposase orfB, interruption-N; This gene is disrupted by the insertion of a group II intron.
5585839	IS1, transposase orfB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF03400
5585886	transposase, Tn3 family, degenerate; this region contains one or more premature stops and/or frameshifts
5585841	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03279
5585856	transposase, IS3 family, degenerate; this region contains one or more premature stops and/or frameshifts
5588563	fimbrial usher protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00577
5590539	type IV pilus assembly protein PilC, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00482
5588789	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
5588234	transposase, IS4 family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01609
5586981	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
5590789	ISEc3, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
5589855	taurine ABC transporter ATP-binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q47538; match to protein family HMM PF00005
5589109	transposase, IS481 family, degenerate; this region contains one or more premature stops and/or frameshifts
5590298	outer membrane usher protein fimD, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P30130; match to protein family HMM PF00577
5589733	bacteriophage N4 adsorption protein B, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P31599
5589642	hypothetical protein; this gene contains a premature stop which is not the result of sequencing error; identified by glimmer
5586400	citrate lyase synthetase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P77390
5587298	ISEc3, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
5585901	protein AbrB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P75747; match to protein family HMM TIGR03082
5589108	conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAZ87440.1
5587790	phage replication protein O, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P03688; match to protein family HMM PF04492; match to protein family HMM TIGR01610
5590635	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to GB:AAZ87747.1
5590503	macrolide-specific ABC-type efflux carrier MacB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P75831; match to protein family HMM PF02687
5589097	phage tail protein, P2 GpE family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF06528
5588117	conserved domain protein, degenerate; this region contains one or more premature stops and/or frameshifts
5586331	bacteriophage Mu DNA transposition protein MuB, truncation; comparison of this gene to its homologs suggests this gene has been truncated
5588334	hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by glimmer
5586276	PhoH protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02562
5587166	2-hydroxyacid dehydrogenase ycdW, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P75913
5589632	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5590360	NAD-dependent deacetylase; this gene contains a frame shift which may be the result of sequencing error; identified by similarity to SP:P75960; match to protein family HMM PF02146
5587664	hemolysin E, chromosomal, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P77335; match to protein family HMM PF06109
5588942	transposase, IS4 family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01609
5586002	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:BAB34672.1
5589880	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5587523	methylated-DNA--protein-cysteine methyltransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P09168; match to protein family HMM PF02870
5588128	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
5590310	transposase, IS605 family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01797
5586750	transferase homolog, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:ABB66204.1
5588699	ISEc1, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
5589373	formate dehydrogenase, major subunit, selenocysteine-containing; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
5586031	ABC transporter periplasmic-binding protein yddS precursor; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00496
5586291	sulfatase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P77318; match to protein family HMM PF00884
5590255	outer membrane usher protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P30130; match to protein family HMM PF00577
5590312	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P64461
5588873	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
5586920	IS3, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P05822; match to protein family HMM PF00665
5587076	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:ABB62002.1
5586410	enterotoxins, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
5590531	hypothetical protein; this gene contains a premature stop which is not the result of sequencing error; identified by glimmer
5586897	hypothetical protein; identified by glimmer
5588188	It has orthologs to Escherichia coli E24377A and Escherichia coli K1 strain IHE3034 and they both hit HMM (PF00165) transcriptional regulator AraC family. This orf has a point mutation, it does not hit any HMM.; transcriptional regulator AraC family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:BAB35922.1
5589821	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5586519	transposase, IS605 family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01797
5587142	phage late control gene D protein (GPD), degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF05954
5590387	phage portal protein, lambda family, interruption-C; identified by match to protein family HMM TIGR01539
5589034	phage portal protein, lambda family, interruption-N; identified by match to protein family HMM PF05136
5588963	propanediol utilization protein PduH; this gene contains a frame shift which may be the result of sequencing error; identified by similarity to GB:AAD39008.1
5589896	nickel/cobalt efflux system RcnA, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF03824
5588256	regulator, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P33345
5589365	FAD dependent oxidoreductase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01266; match to protein family HMM PF01494
5590102	kinase, pfkB family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P33020
5590279	autotransporter IS5K-containing, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414
5590689	peptidase, M28A family, degenerate; this region contains one or more premature stops and/or frameshifts
5588677	hydrogenase-4 component B, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P16429; similarity to SP:P23482; match to protein family HMM PF00361
5586287	hydrogenase-4 component D; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P77416
5587434	hydrogenase-4, F subunit, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P77437; match to protein family HMM PF00361
5588416	arsenate reductase homolog, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03960
5590641	exodeoxyribonuclease VII, large subunit, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P04994; match to protein family HMM PF02601; match to protein family HMM TIGR00237
5589912	3-phenylpropionate dioxygenase alpha subunit, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P0ABR5; match to protein family HMM PF00355; match to protein family HMM PF00848
5589504	outer membrane protein ypjA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
5586645	IS66 family element, transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03050
5588808	DNA-invertase from prophage CP4-44, fragment
5589937	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAZ89410.1
5588625	glutaredoxin; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194
5589166	phage protein, degenerate; this region contains one or more premature stops and/or frameshifts
5585989	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:ABB37655.1
5588741	crispr-associated protein Cas2, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM TIGR01873
5588575	hypothetical protein; this gene contains a premature stop which is not the result of sequencing error; identified by glimmer
5588237	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts
5588473	type III secretion apparatus protein EprJ, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P41785
5588781	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P40727
5589328	peptide chain release factor 2, programmed frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
5589392	conserved domain protein; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to SP:P64562
5586925	acetyl-CoA hydrolase/transferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02550
5587600	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5588959	IS911, transposase orfB, interruption-C; This gene is disrupted by the insertion of a group II intron.; identified by match to protein family HMM PF00665
5586015	IS911, transposase orfB, interruption-N; This gene is disrupted by the insertion of a group II intron.; identified by similarity to GB:CAD48419.3
5586996	prophage CP4-57 regulatory protein AlpA, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF05930
5590572	IS100, transposition helper protein, interruption-N; This gene is disrupted by the insertion of an IS element.
5588430	IS100, transposition helper protein, interruption-C; This gene is disrupted by the insertion of an IS element.; identified by match to protein family HMM PF01695
5588108	FinO protein, degenerate; this region contains one or more premature stops and/or frameshifts
5589469	transposase, IS1111 family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02371
5588712	hypothetical protein; this region contains one or more premature stops and/or frameshifts;identified by glimmer
5588971	permease; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03773
5587481	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts
5590286	hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by glimmer
5587297	di-haem cytochrome c peroxidase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P37197
5589734	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:AAN45023.1
5586895	conserved domain protein; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to GB:ABA88342.1
5589958	maltose-6'-phosphate glucosidase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P54716; match to protein family HMM PF02056
5585961	glucose inhibited division protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138
5587538	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:CAG77041.1
5588980	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5589944	CopG family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01402
5587784	formate dehydrogenase, alpha subunit, selenocysteine-containing, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
5589737	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:ABB68513.1
5588274	formate dehydrogenase, alpha subunit, selenocysteine-containing, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF04879
5586180	ribose-5-phosphate isomerase B, truncation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF02502
5586530	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5588403	anaerobic C4-dicarboxylate transporter DcuB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P0ABN9; match to protein family HMM PF03605; match to protein family HMM TIGR00770
5588994	ascorbate-specific phosphotransferase enzyme IIB component; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to SP:P69822; match to protein family HMM PF02302
5586295	opacity-associated family protein; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P44415; match to protein family HMM PF04225; match to protein family HMM PF08525
5587400	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:ABB68620.1
5590546	IS629, transposase orfB, interruption-C; This gene is disrupted by the insertion of a group II intron.; identified by match to protein family HMM PF00665
5587707	IS629, transposase orfB, interruption-N; This gene is disrupted by the insertion of a group II intron.
5587031	This gene is disrupted by the insertion of a group II intron.; IS911, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts
5589692	This gene is disrupted by the insertion of a group II intron.; IS911, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts
5587170	IS1, transposase orfB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF03400
5589050	IS66 family element, transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03050
5587880	IS66 family element, orf1, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:AAG56016.1
5589660	IS1, transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03400
5585965	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error