-- dump date   	20170507_183149
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NZ_AYEK01000001.1	REFSEQ INFORMATION: The reference sequence was derived fromREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001.REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can beREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBIREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation PipelineREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_regionREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNPREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0xREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBioREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBIREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation PipelineREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_regionREFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S )REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S )REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     ::REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence was derived from AYEK01000001. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S) tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method       :: allpaths v. 41303 Assembly Name         :: EC_K12_MG1655_Broad_SNP Genome Coverage       :: 92.0x Sequencing Technology :: Illumina; PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI Annotation Date                   :: 11/23/2016 06:35:58 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS+ Annotation Software revision      :: 4.0 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;                                      repeat_region Genes (total)                     :: 4,887 CDS (total)                       :: 4,764 Genes (coding)                    :: 4,578 CDS (coding)                      :: 4,578 Genes (RNA)                       :: 123 rRNAs                             :: 8, 7, 7  ( 5S, 16S, 23S ) complete rRNAs                    :: 8, 7, 7  ( 5S, 16S, 23S ) partial rRNAs                     :: tRNAs                             :: 87 ncRNAs                            :: 14 Pseudo Genes (total)              :: 186 Pseudo Genes (ambiguous residues) :: 0 of 186 Pseudo Genes (frameshifted)       :: 78 of 186 Pseudo Genes (incomplete)         :: 78 of 186 Pseudo Genes (internal stop)      :: 59 of 186 Pseudo Genes (multiple problems)  :: 28 of 186 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##