-- dump date 20140619_082230 -- class Genbank::Gene -- table gene_note -- id note 5594528 fimbrial usher protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P33341 5593056 type 4 pilus subunit PilA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 5595043 fimbrial protein; this gene contains a frame shift which may be the result of sequencing error; identified by similarity to SP:P08190; match to protein family HMM PF00419 5595201 ISEc3, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609 5593260 yaiE; conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF06865 5591428 transcriptional regulator, AraC family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00165 5595380 PAAR domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05488 5594749 anaerobic C4-dicarboxylate transporter DcuC; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00771 5594967 serine-type D-Ala-D-Ala carboxypeptidase; this gene contains a frame shift which may be the result of sequencing error; identified by similarity to SP:P0AEB2; match to protein family HMM PF00768; match to protein family HMM PF07943 5592026 peptidase, S54 (rhomboid) family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01694 5594290 ISEc3, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609 5595237 glycosyl hydrolase, family 38, interruption-N; identified by match to protein family HMM PF01074 5593381 glycosyl hydrolase, family 38, interruption-C; identified by match to protein family HMM PF07748 5592047 tol-Pal system beta propeller repeat protein TolB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:1C5K_A; match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800 5594381 glucose / sorbosone dehydrogenase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF07995 5592716 ycaC; isochorismatase hydrolase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00857 5592124 flavodoxin fold family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02525 5592482 ycaI; DNA internalization-related competence protein ComEC/Rec2, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 5592249 conserved domain protein; this gene contains a frame shift which is not the result of sequencing error 5591119 fimbrial protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00419 5591527 ymcA; group 4 capsule (G4C) polysaccharide, lipoprotein YmcA, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P75882 5593559 biofilm PGA synthesis protein PgaA, interruption-C; identified by similarity to SP:P69434 5591350 biofilm PGA synthesis protein PgaA , interruption-N; identified by match to protein family HMM PF07719 5592743 IS3, transposase orfB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P05822 5591400 porin, autotransporter (AT) family; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03797 5594683 hemolysin E, chromosomal, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P77335 5593533 transposase, IS4 family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01609 5594789 transposase, IS605 family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01797 5592912 hypothetical protein; this gene contains a frame shift which is not the result of sequencing error; identified by glimmer 5594896 ydeK; outer membrane autotransporter domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601 5592137 multiple antibiotic resistance protein MarA; identified by similarity to SP:P0ACH7; match to protein family HMM PF00165 5592138 multiple antibiotic resistance protein MarB; identified by similarity to SP:P31121 5593527 glucoside specific outer membrane porin BglH homolog, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P26218; match to protein family HMM PF02264 5591613 ydiF; propionate CoA-transferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01144 5591615 transcriptional regulator, AraC family, interruption-C; identified by match to protein family HMM PF00165 5595061 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P76205 5591492 PTS system, N,N'-diacetylchitobiose-specific EIIA component; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823 5590955 sorbitol dehydrogenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q06004; match to protein family HMM PF00107; match to protein family HMM PF08240 5593746 fliZ protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P52627 5591553 phosphatase homolog, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P76329 5594076 diguanylate cyclase (GGDEF) domain protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 5593947 invasin, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P76347; match to protein family HMM PF00801; match to protein family HMM PF02369 5595400 gamma-glutamyltranspeptidase, fragment, authentic frameshfit; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P18956 5595401 transposase, ISL3 family, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610 5594773 transposase, IS110 family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01548; match to protein family HMM PF02371 5593955 conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts 5593646 membrane protein, TerC family/CBS/transporter associated domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741 5592490 sensory box-containing diguanylate cyclase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 5592992 yegQ; peptidase, U32 family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01136 5591308 transcriptional regulator MlrA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P33358; match to protein family HMM PF00376 5592273 LrgB family protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659 5594942 nucleoside transporter NupC family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to PRF:2014253BK; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 5593066 YfaZ protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF07437 5595308 elaD; conserved hypothetical protein, interruption-N; this gene contains a frame shift which is not the result of sequencing error 5594771 elaD; conserved hypothetical protein, interruption-C; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAV76578.1; match to protein family HMM PF02902 5591781 yfbU; YfbU domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03887 5591285 yfcI; conserved hypothetical protein, authentic point mutation; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 5590964 hydrogenase-4 component B, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P16429; similarity to SP:P23482; match to protein family HMM PF00361 5590966 hydrogenase-4 component D, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P77416; match to protein family HMM PF00361 5592305 cytochrome C-type biogenesis protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P77172; match to protein family HMM PF05231 5595337 stationary phase inducible protein CsiE; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00874 5592660 yfiF; RNA methyltransferase, TrmH family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00588; match to protein family HMM PF08032 5593147 alpha-ketoglutarate permease; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 5594890 transglycosylase SLT family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01464 5594852 type III secretion apparatus lipoprotein EprK, interruption-C 5592921 type III secretion apparatus lipoprotein EprK, interruption-N; identified by match to protein family HMM PF01514 5594843 conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P40727 5592893 dienelactone hydrolase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01738; match to protein family HMM PF08840 5592595 SPFH domain / Band 7 family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01145 5592246 hypothetical protein; this region contains one or more premature stops and/or frameshifts;identified by glimmer 5591355 yhaC; conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts 5591233 C4-dicarboxylate carrier protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P45428 5595242 lipoprotein, degenerate; this region contains one or more premature stops and/or frameshifts 5591314 amino acid ABC transporter permease, His/Glu/Gln/Arg/opine family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P45768; match to protein family HMM TIGR01726 5594211 membrane protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error 5593432 conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by similarity to GB:ABB67500.1 5591717 ISEc1, transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609 5593318 conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to GB:AAN45023.1 5592639 Rhs family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P16918 5592935 DNA-damage-inducible protein D, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P23840 5595082 transposase, IS605 family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01797 5592145 esterase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00756; match to protein family HMM PF02922 5591160 ribose operon repressor RsbR, interruption-N; identified by similarity to SP:P0ACQ0; match to protein family HMM PF00356 5590959 ribose operon repressor RsbR, interruption-C; identified by similarity to SP:P0ACQ0 5590898 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error 5594375 hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer 5593879 ankyrin-repeat protein A, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P23325; match to protein family HMM PF07906 5593449 HAD-superfamily phosphatase, subfamily IIIB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error 5591295 conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00805 5591541 yjcF; conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by similarity to GB:AAP18638.1 5591773 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error 5591774 conserved hypothetical protein, degenerated; this region contains one or more premature stops and/or frameshifts 5593389 penicillin amidase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01804 5592418 NULL; conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error