-- dump date   	20140619_082456
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
12688617	cytotoxic protein CcdB homolog, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q52043
12688632	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
12688755	lysine decarboxylase, constitutive, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P52095; match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711
12688808	ISEc1, transposase, degenerate; this region contains one or more premature stops and/or frameshifts
12688839	conserved domain protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF03400
12688878	transcriptional regulator, LysR family; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00126; match to protein family HMM PF03466
12688895	propionate catabolism operon regulatory protein PrpR, authentic frameshift; this gene contains a premature stop which is not the result of sequencing error
12689069	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12689252	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P67127
12689260	porin D; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to SP:P32722; match to protein family HMM PF03573
12689276	K+-transporting ATPase, F subunit; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM TIGR02115
12689468	ATP-dependent Clp protease, ATP-binding subunit ClpA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P0ABH9
12689472	CRISPR-associated protein, Csy2 family POINT MUTATION; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF09614; match to protein family HMM TIGR02565
12689533	phage tail protein E; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF06158
12689548	DNA internalization-related competence protein ComEC/Rec2; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
12689626	putative purine permease YcdG; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00860
12689642	PhoH protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02562
12689650	IS1, transposase orfA, FRAMESHIFT; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF03811
12689651	IS1, transposase orfB; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF03400
12689655	tetrapyrrole methylase family protein, authentic point mutation; this gene contains a premature stop which may be the result of a sequencing error; identified by similarity to GB:AAN82340.1
12689658	putative sugar isomerase, truncation; comparison of this gene to its homologs suggests this gene has been truncated; identified by match to protein family HMM PF01380
12689659	galactitol utilization operon repressor, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to SP:P36930
12689660	D-galactarate dehydratase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P39829
12689818	prophage protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12689850	head-tail preconnector protein; this gene contains a frame shift which may be the result of a sequencing error
12689863	tail assembly protein K; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00877
12689874	isocitrate dehydrogenase, truncation; comparison of this gene to its homologs suggests this gene has been truncated; identified by similarity to SP:P08200
12689962	IS4, transposase, internal deletion; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01609
12689978	putative membrane protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF06790
12690000	conserved hypothetical protein FRAMESHIFT; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF08410
12690031	gifsy-1 prophage protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF08400
12690036	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12690184	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:ABB66204.1
12690189	ISEc3, transposase, degenerate; this region contains one or more premature stops and/or frameshifts
12690190	flavin reductase domain protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01613
12690259	peptidyl-dipeptidase Dcp, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P24171
12690272	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12690361	aldehyde ferredoxin oxidoreductase; this gene contains a frame shift which is not the result of sequencing error
12690571	methyl-accepting chemotaxis protein IV, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAN43487.2
12690608	hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error; identified by glimmer; putative
12690676	phage major capsid protein, HK97 family; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
12690678	phage portal protein, HK97 family; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
12690704	phage regulatory protein, Rha family; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681
12690711	integrase; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF00589
12690712	salicylate synthetase, Irp9; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00425; match to protein family HMM TIGR03494
12690723	putative invasin/adhesin, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAG57041.1; match to protein family HMM PF02369
12690741	amino acid adenylation domain protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
12690747	non-ribosomal peptide synthetase; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
12690753	oxidoreductase, zinc-binding dehydrogenase family; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659; match to protein family HMM TIGR01733
12690756	IS3, transposase orfB, truncation; comparison of this gene to its homologs suggests this gene has been truncated
12690772	ribokinase; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF08543
12690774	putative membrane protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12690776	gamma-glutamyltranspeptidase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to SP:P18956
12690778	transposase, ISL3 family, degenerate; this region contains one or more premature stops and/or frameshifts
12690792	putative GTPase, internal deletion; this gene model represents a disrupted reading frame with multiple genetic anomalies; identified by similarity to GB:AAL08471.1
12690808	penicillin-binding protein 6B, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P33013
12690914	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12690975	mannitol dehydrogenase family; this gene contains a premature stop which is not the result of sequencing error
12690994	TibA; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF03212
12691025	3-oxoacid CoA-transferase, B subunit; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
12691048	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
12691162	phage tail protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM TIGR01760
12691164	phage tail protein E; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF06158
12691237	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12691238	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12691417	putative adenine-specific DNA methyltransferase, degenerate; this region contains one or more premature stops and/or frameshifts
12691500	IS621, transposase, degenerate; this region contains one or more premature stops and/or frameshifts
12691685	RNA polymerase sigma factor RpoS, authentic point mutation; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02394; match to protein family HMM TIGR02937
12691768	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
12691843	peptide chain release factor 2, programmed frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
12691884	conserved hypothetical protein, internal deletion; this gene contains a frame shift which is not the result of sequencing error
12692129	PTS system, D-galactosamine-specific, IIC component, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P42910
12692391	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784
12692412	putative fimbrial protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAD17914.1
12692432	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:AAN82669.1
12692451	PTS system, IIB component; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF03830
12692546	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error; identified by similarity to GB:AAN45023.1
12692611	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12692697	putative sulfatase YidJ; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00884
12692708	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01081
12692733	isoamylase N-terminal domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12692769	putative membrane protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12692931	conserved domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12692932	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts
12692977	nucleotidase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12693008	TonB-dependent vitamin B12 receptor, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P06129; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01779
12693145	cytochrome c-type biogenesis protein NrfE, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P32710; match to protein family HMM PF01578; match to protein family HMM TIGR00353
12693165	D-allose transport system permease protein AlsC, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12693195	biodegradative arginine decarboxylase AdiA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P28629
12693246	putative iron-sulfur cluster binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
12693292	AP endonuclease, family 2 - FRAMESHIFT; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01261
12693404	hydroxypyruvate isomerase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P30147
12693405	glyoxylate carboligase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12693409	LysR substrate binding domain protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
12693414	RNA 2'-phosphotransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error