-- dump date   	20140619_090101
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003227106.1	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_003227107.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_003227108.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_003227113.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_003227114.1	associated with acetate transport
YP_003227117.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_003227118.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_003227120.1	small toxic membrane polypeptide
YP_003227121.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_003227122.1	Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC
YP_003227124.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_003227126.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_003227127.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_003227128.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_003227129.1	rotamase
YP_003227130.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_003227131.1	catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides
YP_003227132.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_003227133.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_003227134.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_003227136.1	regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons
YP_003227137.1	involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities
YP_003227138.1	catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA
YP_003227140.1	catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine
YP_003227141.1	catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA
YP_003227142.1	catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism
YP_003227143.1	required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase
YP_003227144.1	involved in electron transfer during carnitine metabolism
YP_003227145.1	FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction
YP_003227148.1	Required for full activity of KefC, a potassium-proton antiporter
YP_003227149.1	transport system that facilitates potassium-efflux
YP_003227150.1	catalyzes the reduction of dihydrofolate to tetrahydrofolate
YP_003227154.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_003227155.1	protein associated with Co2+ and Mg2+ efflux
YP_003227156.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_003227157.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_003227158.1	Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB
YP_003227159.1	determines N-hexane tolerance and is involved in outer membrane permeability
YP_003227160.1	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system
YP_003227161.1	catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs
YP_003227162.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_003227163.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_003227164.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_003227165.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_003227166.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_003227167.1	positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose
YP_003227169.1	with TbpA and ThiP is part of the thiamine and TPP transport system
YP_003227170.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_003227171.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_003227172.1	activates sgrS under glucose-phosphate stress conditions
YP_003227175.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_003227176.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_003227177.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_003227178.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_003227179.1	involved in attenuation control of the leuABCD operon in leucine biosynthesis
YP_003227180.1	activator for leuABCD operon; member of LysR family of transcriptional activators
YP_003227181.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive
YP_003227182.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_003227184.1	binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism
YP_003227185.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_003227186.1	on membrane-located substrates
YP_003227187.1	membrane bound cell division protein at septum containing leucine zipper motif
YP_003227188.1	involved in septal peptidoglycan synthesis (penicillin-binding protein 3)
YP_003227189.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_003227191.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_003227192.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_003227193.1	integral membrane protein involved in stabilizing FstZ ring during cell division
YP_003227194.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_003227195.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_003227196.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_003227197.1	involved in septum formation
YP_003227198.1	ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane
YP_003227199.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_003227200.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_003227201.1	secM translational pause allows for the initiation of secA translation
YP_003227202.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_003227207.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_003227208.1	catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate
YP_003227209.1	component of type IV pilin biogenesis pathway, probable chaperone
YP_003227210.1	component of type IV pilin biogenesis pathway, probable usher; contains nucleosidetriphosphate hydrolase domain
YP_003227212.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_003227214.1	involved in regulation of beta-lactamase; signaling protein
YP_003227216.1	activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex
YP_003227217.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_003227218.1	E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains
YP_003227219.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_003227221.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_003227223.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_003227224.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_003227226.1	laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification
YP_003227229.1	catalyzes the interconversion of bicarbonate and carbon dioxide
YP_003227230.1	ATP-binding component of ABC superfamily
YP_003227231.1	membrane component of ABC superfamily
YP_003227234.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_003227236.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_003227237.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_003227241.1	similar to the fimbrial usher protein PapC
YP_003227244.1	catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP
YP_003227245.1	Polymerase that creates the 3' poly(A) tail found in some mRNA's
YP_003227246.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_003227248.1	Regulatory factor involved in maltose metabolism
YP_003227250.1	similar in sequence to the ATP-dependent RNA helicase HrpA
YP_003227251.1	bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell
YP_003227252.1	involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein
YP_003227253.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter
YP_003227254.1	Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores
YP_003227255.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_003227256.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_003227257.1	Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation
YP_003227258.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_003227260.1	solute binding component of the vitamin B12 transport system BtuCDF
YP_003227261.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_003227262.1	forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate
YP_003227263.1	protease Do; required at high temperature; degrades damaged proteins
YP_003227264.1	regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization
YP_003227267.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_003227268.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_003227269.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_003227270.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_003227271.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_003227272.1	Catalyzes the phosphorylation of UMP to UDP
YP_003227273.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_003227274.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_003227275.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_003227276.1	catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate
YP_003227277.1	catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response
YP_003227278.1	part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins
YP_003227280.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_003227281.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_003227282.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_003227283.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_003227284.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_003227285.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_003227286.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_003227289.1	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase
YP_003227290.1	Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination
YP_003227294.1	involved with copper homeostasis and adhesion
YP_003227296.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_003227299.1	periplasmic-binding component of ABC superfamily
YP_003227300.1	part of the MetNIQ methionine uptake system
YP_003227301.1	part of the metNIQ transport system for methionine
YP_003227302.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_003227303.1	catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid
YP_003227307.1	catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall
YP_003227308.1	catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione
YP_003227310.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_003227311.1	3'-5' exonuclease of DNA polymerase III
YP_003227322.1	Rhs
YP_003227326.1	inactivates vertebrate C-type lysozyme
YP_003227327.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_003227328.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_003227333.1	involved in toxin-antitoxin system
YP_003227334.1	involved in toxin-antitoxin system
YP_003227335.1	FlhA-like
YP_003227336.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_003227337.1	FliR-like
YP_003227338.1	FliQ-like
YP_003227339.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_003227340.1	FliN-like
YP_003227341.1	FliM-like
YP_003227342.1	FhlA-like
YP_003227343.1	FliE-like
YP_003227344.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella
YP_003227345.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003227346.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_003227347.1	FliI-like
YP_003227348.1	FliJ-like
YP_003227350.1	FliB/FliUV-like
YP_003227351.1	FlgN-like
YP_003227352.1	FlgM-like
YP_003227353.1	FlgA-like
YP_003227354.1	FlgB-like
YP_003227355.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella
YP_003227356.1	FlgD-like
YP_003227357.1	FlgE-like
YP_003227358.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_003227359.1	makes up the distal portion of the flagellar basal body rod
YP_003227360.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; the Yersinia have 2 copies of flgH
YP_003227361.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_003227362.1	FlgJ-like
YP_003227363.1	FlgK-like
YP_003227364.1	FlgL-like
YP_003227367.1	FliC-like
YP_003227368.1	FliD-like
YP_003227369.1	FliS-like
YP_003227370.1	FliT-like
YP_003227371.1	FliK-like
YP_003227373.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_003227374.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003227375.1	MotB-like
YP_003227376.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_003227377.1	contains acyl-CoA N-acyltransferase domain
YP_003227378.1	mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY
YP_003227379.1	similar to release factor 1 and 2
YP_003227380.1	peptidase D
YP_003227381.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_003227382.1	forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation
YP_003227383.1	involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS
YP_003227385.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_003227386.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_003227387.1	Integrative element ECO26_IE01
YP_003227388.1	Integrative element ECO26_IE01
YP_003227389.1	Integrative element ECO26_IE01
YP_003227390.1	Integrative element ECO26_IE01
YP_003227391.1	Integrative element ECO26_IE01
YP_003227392.1	Integrative element ECO26_IE01
YP_003227393.1	Integrative element ECO26_IE01
YP_003227394.1	Integrative element ECO26_IE01
YP_003227395.1	Integrative element ECO26_IE01
YP_003227396.1	Integrative element ECO26_IE01
YP_003227397.1	Integrative element ECO26_IE01
YP_003227398.1	Integrative element ECO26_IE01
YP_003227399.1	Integrative element ECO26_IE01
YP_003227400.1	Integrative element ECO26_IE01
YP_003227401.1	Integrative element ECO26_IE01
YP_003227402.1	Integrative element ECO26_IE01
YP_003227403.1	Integrative element ECO26_IE01
YP_003227405.1	contains molybdenum-binding domain
YP_003227406.1	contains FAD-binding domain
YP_003227417.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_003227418.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_003227424.1	Involved in disulfide oxidoreductase activity and electron transport
YP_003227427.1	contains NAD(P)-binding domain and ferridoxin-like domain
YP_003227431.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_003227432.1	catalyzes the formation of betaine from betaine aldehyde
YP_003227433.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_003227434.1	proton-motive-force-driven choline transporter
YP_003227437.1	contains ankyrin domain
YP_003227439.1	contains NAD(P)-binding domain and succinyl-CoA synthetase domain
YP_003227442.1	metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain
YP_003227446.1	ABC transporter
YP_003227447.1	ABC transporter
YP_003227453.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_003227454.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_003227455.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_003227456.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_003227458.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_003227459.1	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_003227461.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_003227462.1	MFS transporter family member induced in the presence of cyanate as part of a 3 gene operon; not essential
YP_003227463.1	lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments
YP_003227464.1	forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon
YP_003227465.1	transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer
YP_003227466.1	activator of 3-phenylpropionic acid catabolism
YP_003227467.1	catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate
YP_003227468.1	catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family
YP_003227470.1	catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid
YP_003227471.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_003227472.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_003227477.1	formaldehyde-induced negative regulator of the frmRAB operon
YP_003227482.1	with TauB and TauC is responsible for taurine uptake.
YP_003227483.1	Part of the ABC transporter complex tauABC involved in taurine import
YP_003227484.1	membrane component of ABC superfamily
YP_003227485.1	catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers
YP_003227486.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_003227489.1	this protein has no known enzymatic function
YP_003227490.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_003227494.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_003227498.1	catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis
YP_003227499.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_003227501.1	type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_003227505.1	Required for efficient pilin antigenic variation
YP_003227506.1	catalyzes phosphorylation of fructose; cytosolic enzyme
YP_003227507.1	member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers
YP_003227508.1	with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity
YP_003227509.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_003227510.1	two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB
YP_003227511.1	membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB
YP_003227512.1	LIV-II
YP_003227513.1	cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation
YP_003227515.1	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
YP_003227516.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_003227517.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_003227518.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_003227519.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_003227520.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_003227522.1	receptor of phage T6 and colicin K
YP_003227525.1	riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil
YP_003227526.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_003227527.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_003227528.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_003227529.1	hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate
YP_003227531.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_003227533.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_003227534.1	Required for the synthesis of the thiazole moiety
YP_003227536.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_003227537.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_003227542.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_003227547.1	in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein
YP_003227549.1	positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress
YP_003227550.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_003227551.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_003227552.1	binds and unfolds substrates as part of the ClpXP protease
YP_003227554.1	histone-like DNA-binding protein
YP_003227555.1	rotamase D
YP_003227558.1	YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His
YP_003227559.1	periplasmic-binding component of ABC superfamily
YP_003227564.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.
YP_003227573.1	with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins
YP_003227577.1	regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine
YP_003227578.1	small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS
YP_003227581.1	PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks
YP_003227583.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_003227584.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_003227586.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_003227587.1	molecular chaperone
YP_003227588.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_003227589.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_003227592.1	YbaL; member of the CPA-2 family of antiporters; uncharacterized protein
YP_003227594.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_003227599.1	catalyzes the formation of glutamate from glutamine
YP_003227601.1	activator of copper-responsive regulon genes
YP_003227604.1	ATP-binding component of ABC superfamily
YP_003227607.1	contains NAD(P)-binding Rossmann-fold domain
YP_003227609.1	ATP-binding component of ABC superfamily
YP_003227612.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_003227613.1	activator of the allDC-ylbA operon involved in allantoin utilization
YP_003227614.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_003227615.1	regulates operons involved in the utilization of allantoin
YP_003227616.1	catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate
YP_003227620.1	Plays a crucial role on both purine and pyrimidine metabolism
YP_003227623.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_003227625.1	multicopy suppressor of dominant negative ftsH mutations
YP_003227629.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_003227631.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_003227632.1	rotamase B
YP_003227633.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_003227636.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_003227642.1	activates the production of the major fimbrae protein FimA
YP_003227643.1	Prophage ECO26_P01
YP_003227644.1	Prophage ECO26_P01
YP_003227645.1	Prophage ECO26_P01
YP_003227646.1	Prophage ECO26_P01; TraR-family
YP_003227647.1	Prophage ECO26_P01
YP_003227648.1	Prophage ECO26_P01
YP_003227649.1	Prophage ECO26_P01
YP_003227650.1	Prophage ECO26_P01
YP_003227651.1	Prophage ECO26_P01
YP_003227652.1	Prophage ECO26_P01
YP_003227653.1	Prophage ECO26_P01
YP_003227654.1	Prophage ECO26_P01
YP_003227655.1	Prophage ECO26_P01
YP_003227656.1	Prophage ECO26_P01
YP_003227657.1	Prophage ECO26_P01
YP_003227658.1	Prophage ECO26_P01
YP_003227659.1	Prophage ECO26_P01
YP_003227660.1	Prophage ECO26_P01
YP_003227661.1	Prophage ECO26_P01
YP_003227662.1	Prophage ECO26_P01
YP_003227663.1	DLP12 prophage
YP_003227664.1	Prophage ECO26_P01
YP_003227665.1	DLP12 prophage; Holliday junction resolvase
YP_003227666.1	Prophage ECO26_P01
YP_003227667.1	Prophage ECO26_P01
YP_003227668.1	Prophage ECO26_P01
YP_003227669.1	Prophage ECO26_P01
YP_003227670.1	Prophage ECO26_P01
YP_003227671.1	Prophage ECO26_P01
YP_003227672.1	Prophage ECO26_P01
YP_003227673.1	Prophage ECO26_P01
YP_003227674.1	Prophage ECO26_P01
YP_003227675.1	Prophage ECO26_P01
YP_003227676.1	Prophage ECO26_P01
YP_003227677.1	Prophage ECO26_P01
YP_003227678.1	Prophage ECO26_P01
YP_003227679.1	Prophage ECO26_P01; predicted protein Orf3 in insertion sequence ISCro1
YP_003227680.1	Prophage ECO26_P01; predicted protein Orf2 in insertion sequence ISCro1
YP_003227681.1	Prophage ECO26_P01; predicted protein Orf1 in insertion sequence ISCro1
YP_003227682.1	Prophage ECO26_P01
YP_003227683.1	Prophage ECO26_P01
YP_003227684.1	Prophage ECO26_P01
YP_003227685.1	Prophage ECO26_P01
YP_003227686.1	Prophage ECO26_P01
YP_003227687.1	Prophage ECO26_P01
YP_003227688.1	Prophage ECO26_P01
YP_003227689.1	Prophage ECO26_P01
YP_003227690.1	Prophage ECO26_P01
YP_003227691.1	Prophage ECO26_P01
YP_003227692.1	Prophage ECO26_P01
YP_003227693.1	Prophage ECO26_P01
YP_003227694.1	Prophage ECO26_P01
YP_003227695.1	Prophage ECO26_P01
YP_003227696.1	Prophage ECO26_P01
YP_003227697.1	Prophage ECO26_P01
YP_003227698.1	Prophage ECO26_P01
YP_003227699.1	Prophage ECO26_P01
YP_003227700.1	Prophage ECO26_P01
YP_003227701.1	Prophage ECO26_P01
YP_003227702.1	outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA
YP_003227707.1	RhsJ, IS677
YP_003227710.1	RhsK
YP_003227712.1	response regulator in two-component regulatory system with CusS; regulates the copper efflux system
YP_003227713.1	with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver
YP_003227715.1	with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver
YP_003227716.1	membrane component
YP_003227719.1	catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive
YP_003227722.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_003227724.1	The MokC translation enables hok (gef) expression.
YP_003227726.1	component of enterobactin synthase multienzyme complex
YP_003227727.1	Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space
YP_003227730.1	with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin
YP_003227731.1	part of the ferric enterobactin transport system; necessary for enetrobactin uptake
YP_003227732.1	with FepBDE is involved in the transport of ferric enterobactin
YP_003227733.1	with FepBCD is involved in the transport of ferric enterobactin
YP_003227734.1	with FepBCG is involved in the transport of ferric enterobactin
YP_003227735.1	protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters
YP_003227736.1	with FepCDG is involved in the transport of ferric enterobactin
YP_003227738.1	bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate
YP_003227740.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_003227744.1	member of the iron-containing alcohol dehydrogenase family; unknown function
YP_003227745.1	catalyzes the transfer of an amino moiety
YP_003227749.1	Involved in disulfide bond formation
YP_003227750.1	with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate
YP_003227754.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_003227757.1	catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA
YP_003227758.1	2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate
YP_003227759.1	alpha subunit
YP_003227760.1	beta subunit
YP_003227761.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_003227764.1	regulates the expression of citAB in citrate fermentation
YP_003227765.1	responsible for the transport of C4-dicarboxylates during anaerobic growth
YP_003227766.1	catalyzes the transfer of palmitate to lipid A
YP_003227767.1	member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator
YP_003227768.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_003227770.1	TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_003227771.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_003227773.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_003227775.1	penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors
YP_003227778.1	involved in peptidoglycan synthesis (penicillin-binding protein 2)
YP_003227779.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_003227782.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_003227783.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_003227784.1	rare lipoprotein B; involved in the assembly of LPS in the outer membrane
YP_003227785.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_003227792.1	binds to RpoD and inhibits transcription
YP_003227793.1	Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific
YP_003227795.1	membrane component of ABC superfamily
YP_003227796.1	membrane component of ABC superfamily
YP_003227797.1	ABC superfamily
YP_003227799.1	Transfers the fatty acyl group on membrane lipoproteins
YP_003227802.1	contains nucleoside triphosphate hydrolase domain
YP_003227803.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_003227804.1	catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q
YP_003227805.1	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP
YP_003227808.1	catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate
YP_003227809.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_003227810.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003227811.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003227814.1	negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer
YP_003227816.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_003227819.1	negative modulator of the initiation of chromosome replication
YP_003227820.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_003227821.1	catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system
YP_003227823.1	response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport
YP_003227824.1	sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein
YP_003227825.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_003227826.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_003227827.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_003227828.1	one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_003227830.1	RhsC
YP_003227834.1	UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent
YP_003227840.1	5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity
YP_003227846.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_003227849.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_003227850.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_003227851.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_003227852.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_003227853.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_003227854.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_003227855.1	regulates the succiny-lCoA synthetase operon
YP_003227856.1	involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake
YP_003227862.1	catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components
YP_003227863.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_003227864.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_003227865.1	inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins
YP_003227866.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_003227868.1	periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity
YP_003227869.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_003227871.1	involved in zinc efflux across the cytoplasmic membrane
YP_003227873.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_003227874.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_003227875.1	catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose
YP_003227876.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_003227877.1	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P
YP_003227879.1	contains 2 ATP-binding cassettes; involved in the transport of molybdenum
YP_003227880.1	represses the modABCD operon and activates the moaABCD and napFDAGHBC operons
YP_003227882.1	with ModCB is involved in the high-affinity transport of molybdate
YP_003227883.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_003227884.1	Part of the ABC transporter complex modABC involved in molybdenum import
YP_003227885.1	YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily
YP_003227886.1	catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate
YP_003227891.1	outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family
YP_003227892.1	Prophage ECO26_P02
YP_003227893.1	Prophage ECO26_P02
YP_003227894.1	Prophage ECO26_P02
YP_003227895.1	Prophage ECO26_P02
YP_003227896.1	Prophage ECO26_P02
YP_003227897.1	Prophage ECO26_P02
YP_003227898.1	Prophage ECO26_P02
YP_003227899.1	Prophage ECO26_P02
YP_003227900.1	Prophage ECO26_P02
YP_003227901.1	Prophage ECO26_P02
YP_003227902.1	Prophage ECO26_P02
YP_003227903.1	Prophage ECO26_P02
YP_003227904.1	Prophage ECO26_P02
YP_003227905.1	Prophage ECO26_P02
YP_003227906.1	Prophage ECO26_P02
YP_003227907.1	Prophage ECO26_P02
YP_003227908.1	Prophage ECO26_P02
YP_003227909.1	Prophage ECO26_P02
YP_003227910.1	Prophage ECO26_P02
YP_003227911.1	Prophage ECO26_P02
YP_003227912.1	Prophage ECO26_P02
YP_003227913.1	Prophage ECO26_P02
YP_003227914.1	Prophage ECO26_P02
YP_003227915.1	Prophage ECO26_P02
YP_003227916.1	Prophage ECO26_P02
YP_003227917.1	Prophage ECO26_P02
YP_003227918.1	Prophage ECO26_P02
YP_003227919.1	Prophage ECO26_P02
YP_003227920.1	Prophage ECO26_P02
YP_003227921.1	Prophage ECO26_P02
YP_003227922.1	Prophage ECO26_P02
YP_003227923.1	Prophage ECO26_P02
YP_003227924.1	Prophage ECO26_P02
YP_003227925.1	Prophage ECO26_P02
YP_003227926.1	Prophage ECO26_P02
YP_003227927.1	Prophage ECO26_P02
YP_003227928.1	Prophage ECO26_P02
YP_003227929.1	Prophage ECO26_P02
YP_003227930.1	Prophage ECO26_P02
YP_003227931.1	Prophage ECO26_P02
YP_003227932.1	Prophage ECO26_P02
YP_003227933.1	Prophage ECO26_P02; predicted protein Orf1 in insertion sequence ISEc22
YP_003227934.1	Prophage ECO26_P02; predicted protein Orf2 in insertion sequence ISEc22
YP_003227935.1	Prophage ECO26_P02; predicted protein Orf3 in insertion sequence ISEc22
YP_003227936.1	Prophage ECO26_P02
YP_003227937.1	Prophage ECO26_P02
YP_003227938.1	Prophage ECO26_P02
YP_003227939.1	Prophage ECO26_P02
YP_003227940.1	Prophage ECO26_P02
YP_003227941.1	Prophage ECO26_P02
YP_003227942.1	Prophage ECO26_P02
YP_003227943.1	Prophage ECO26_P02
YP_003227944.1	Prophage ECO26_P02
YP_003227945.1	Prophage ECO26_P02
YP_003227946.1	Prophage ECO26_P02
YP_003227947.1	Prophage ECO26_P02
YP_003227948.1	Prophage ECO26_P02; predicted protein Orf3 in insertion sequence ISCro1
YP_003227949.1	Prophage ECO26_P02; predicted protein Orf2 in insertion sequence ISCro1
YP_003227950.1	Prophage ECO26_P02; predicted protein Orf1 in insertion sequence ISCro1
YP_003227951.1	Prophage ECO26_P02
YP_003227952.1	Prophage ECO26_P02
YP_003227953.1	Prophage ECO26_P02
YP_003227954.1	Prophage ECO26_P02
YP_003227955.1	YbhB; similar to rat and human kinase inhibitory proteins
YP_003227956.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_003227958.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_003227959.1	methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth
YP_003227960.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_003227961.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_003227963.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_003227965.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_003227966.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_003227967.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_003227974.1	membrane component of ABC superfamily
YP_003227975.1	membrane component of ABC superfamily
YP_003227979.1	this helicase is not essential cell growth
YP_003227982.1	helicase involved in DNA repair and perhaps also replication
YP_003227988.1	Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein
YP_003227992.1	similar to ATP-binding component of ABC transporters
YP_003227993.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_003227994.1	similar to periplasmic-binding component of ABC transporters
YP_003227995.1	binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage
YP_003227997.1	OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains
YP_003227999.1	Transcriptional regulator that represses the manganese transporter MntH when manganese is present
YP_003228008.1	similar to transaldolase from Escherichia coli; many organisms have multiple copies
YP_003228009.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_003228010.1	is involved in the formation of active molybdenum cofactor and the chelation of molybdenum
YP_003228012.1	with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains
YP_003228013.1	periplasmic-binding component of ABC superfamily
YP_003228014.1	membrane component of ABC superfamily
YP_003228015.1	membrane component of ABC superfamily
YP_003228018.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_003228019.1	BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
YP_003228022.1	penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_003228032.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
YP_003228033.1	YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function
YP_003228034.1	NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds
YP_003228035.1	responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6
YP_003228037.1	periplasmic-binding component of ABC superfamily
YP_003228038.1	part of the PotFGHI ATP-dependent putrescine transporter
YP_003228039.1	membrane component of ABC superfamily
YP_003228040.1	membrane component of ABC superfamily
YP_003228042.1	RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA
YP_003228044.1	with ArtPQJI acts to transport arginine across the inner membrane
YP_003228045.1	with ArtPMJI transports arginine across the inner membrane
YP_003228047.1	With ArtMQJI transports arginine across the inner membrane
YP_003228048.1	induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS
YP_003228051.1	contains NAD(P)-binding Rossmann-fold domain
YP_003228052.1	contains NAD(P)-binding Rossmann-fold domain
YP_003228053.1	low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine
YP_003228054.1	catalyzes the formation of acetate from pyruvate
YP_003228056.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_003228058.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_003228059.1	contains nucleoside triphosphate hydrolase domain
YP_003228061.1	confers macrolide resistance via active drug efflux
YP_003228062.1	with MacA is involved in the export of macrolide
YP_003228063.1	inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible
YP_003228064.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_003228065.1	ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates
YP_003228066.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_003228067.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_003228068.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_003228069.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_003228070.1	catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding
YP_003228071.1	mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system
YP_003228072.1	DNA-binding membrane protein required for chromosome resolution and partitioning
YP_003228073.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_003228075.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003228084.1	activates pyruvate formate-lyase 1 under anaerobic conditions
YP_003228089.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_003228090.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_003228092.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_003228093.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_003228094.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_003228096.1	involved in the transport of lipid A across the inner membrane
YP_003228097.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_003228100.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_003228103.1	involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA
YP_003228104.1	acts with MukB and MukE to condense the chromosome and allow for segregation during cell division
YP_003228105.1	acts with MukB and MukF to condense the chromosome and allow for segregation during cell division
YP_003228106.1	SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects
YP_003228111.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_003228112.1	outer membrane porin F; 1a; Ia; b
YP_003228113.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003228114.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_003228116.1	part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease
YP_003228117.1	part of the ABC type transport system for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease
YP_003228118.1	catalyzes the release of sulfite from alkanesulfonates
YP_003228119.1	part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease
YP_003228128.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_003228131.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_003228132.1	Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth
YP_003228137.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_003228140.1	OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d
YP_003228145.1	catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand
YP_003228146.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_003228148.1	contains NAD(P)-binding Rossmann-fold domain
YP_003228151.1	catalyzes the hydrolysis of acylphosphate
YP_003228152.1	transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs
YP_003228154.1	Prophage ECO26_P03
YP_003228155.1	Prophage ECO26_P03
YP_003228156.1	Prophage ECO26_P03
YP_003228157.1	Prophage ECO26_P03
YP_003228158.1	Prophage ECO26_P03
YP_003228159.1	Prophage ECO26_P03
YP_003228160.1	Prophage ECO26_P03
YP_003228161.1	Prophage ECO26_P03
YP_003228162.1	Prophage ECO26_P03
YP_003228163.1	Prophage ECO26_P03
YP_003228164.1	Prophage ECO26_P03
YP_003228165.1	Prophage ECO26_P03
YP_003228166.1	Prophage ECO26_P03
YP_003228167.1	Prophage ECO26_P03
YP_003228168.1	Prophage ECO26_P03
YP_003228169.1	Prophage ECO26_P03
YP_003228170.1	Prophage ECO26_P03
YP_003228171.1	Prophage ECO26_P03
YP_003228172.1	Prophage ECO26_P03
YP_003228173.1	Prophage ECO26_P03
YP_003228174.1	Prophage ECO26_P03
YP_003228175.1	Prophage ECO26_P03
YP_003228176.1	Prophage ECO26_P03
YP_003228177.1	Prophage ECO26_P03
YP_003228178.1	Prophage ECO26_P03
YP_003228179.1	Prophage ECO26_P03
YP_003228180.1	Prophage ECO26_P03
YP_003228181.1	Prophage ECO26_P03
YP_003228182.1	Prophage ECO26_P03; involved in inhibition of gamma-INF-induced STAT-1 phosphorylation
YP_003228183.1	Prophage ECO26_P03
YP_003228184.1	Prophage ECO26_P03
YP_003228185.1	Prophage ECO26_P03
YP_003228186.1	Prophage ECO26_P03
YP_003228187.1	Prophage ECO26_P03
YP_003228188.1	Prophage ECO26_P03
YP_003228189.1	Prophage ECO26_P03
YP_003228190.1	Prophage ECO26_P03
YP_003228191.1	Prophage ECO26_P03
YP_003228192.1	Prophage ECO26_P03
YP_003228193.1	Prophage ECO26_P03
YP_003228194.1	Prophage ECO26_P03
YP_003228195.1	Prophage ECO26_P03
YP_003228196.1	Prophage ECO26_P03
YP_003228197.1	Prophage ECO26_P03
YP_003228198.1	Prophage ECO26_P03
YP_003228199.1	Prophage ECO26_P03
YP_003228200.1	Prophage ECO26_P03
YP_003228201.1	Prophage ECO26_P03
YP_003228202.1	Prophage ECO26_P03
YP_003228203.1	Prophage ECO26_P03
YP_003228204.1	Prophage ECO26_P03
YP_003228205.1	Prophage ECO26_P03
YP_003228206.1	Prophage ECO26_P03
YP_003228207.1	Prophage ECO26_P03
YP_003228208.1	Prophage ECO26_P03
YP_003228209.1	Prophage ECO26_P03
YP_003228210.1	Prophage ECO26_P03
YP_003228211.1	Prophage ECO26_P03
YP_003228212.1	Prophage ECO26_P03
YP_003228213.1	Prophage ECO26_P03
YP_003228214.1	Prophage ECO26_P03
YP_003228215.1	Prophage ECO26_P03
YP_003228216.1	Prophage ECO26_P03
YP_003228217.1	Prophage ECO26_P03
YP_003228218.1	Prophage ECO26_P03
YP_003228219.1	Prophage ECO26_P04
YP_003228220.1	Prophage ECO26_P04
YP_003228221.1	Prophage ECO26_P04
YP_003228222.1	Prophage ECO26_P04
YP_003228223.1	Prophage ECO26_P04
YP_003228224.1	Prophage ECO26_P04
YP_003228225.1	Prophage ECO26_P04
YP_003228226.1	Prophage ECO26_P04
YP_003228227.1	Prophage ECO26_P04
YP_003228228.1	Prophage ECO26_P04
YP_003228229.1	Prophage ECO26_P04
YP_003228230.1	Prophage ECO26_P04
YP_003228231.1	Prophage ECO26_P04
YP_003228232.1	Prophage ECO26_P04
YP_003228233.1	Prophage ECO26_P04
YP_003228234.1	Prophage ECO26_P04
YP_003228235.1	Prophage ECO26_P04
YP_003228236.1	Prophage ECO26_P04
YP_003228237.1	Prophage ECO26_P04
YP_003228238.1	Prophage ECO26_P04
YP_003228239.1	Prophage ECO26_P04
YP_003228240.1	Prophage ECO26_P04
YP_003228241.1	Prophage ECO26_P04
YP_003228242.1	Prophage ECO26_P04
YP_003228243.1	Prophage ECO26_P04
YP_003228244.1	Prophage ECO26_P04
YP_003228245.1	Prophage ECO26_P04
YP_003228246.1	Prophage ECO26_P04
YP_003228247.1	Prophage ECO26_P04
YP_003228248.1	Prophage ECO26_P04
YP_003228249.1	Prophage ECO26_P04
YP_003228250.1	Prophage ECO26_P04
YP_003228251.1	Prophage ECO26_P04
YP_003228252.1	Prophage ECO26_P04
YP_003228253.1	Prophage ECO26_P04
YP_003228254.1	Prophage ECO26_P04
YP_003228255.1	Prophage ECO26_P04
YP_003228256.1	Prophage ECO26_P04
YP_003228257.1	Prophage ECO26_P04
YP_003228258.1	Prophage ECO26_P04
YP_003228259.1	Prophage ECO26_P04
YP_003228260.1	Prophage ECO26_P04
YP_003228261.1	Prophage ECO26_P04
YP_003228262.1	Prophage ECO26_P04
YP_003228263.1	Prophage ECO26_P04
YP_003228264.1	Prophage ECO26_P04
YP_003228265.1	Prophage ECO26_P04
YP_003228266.1	Prophage ECO26_P04
YP_003228267.1	Prophage ECO26_P04
YP_003228268.1	Prophage ECO26_P04
YP_003228269.1	Prophage ECO26_P04
YP_003228270.1	Prophage ECO26_P04
YP_003228271.1	Prophage ECO26_P04
YP_003228272.1	Prophage ECO26_P04
YP_003228273.1	Prophage ECO26_P04
YP_003228274.1	Prophage ECO26_P04
YP_003228275.1	Prophage ECO26_P04
YP_003228276.1	Prophage ECO26_P04
YP_003228277.1	Prophage ECO26_P04
YP_003228278.1	Prophage ECO26_P04
YP_003228279.1	Prophage ECO26_P04
YP_003228280.1	Prophage ECO26_P04
YP_003228281.1	Prophage ECO26_P04
YP_003228282.1	Prophage ECO26_P04
YP_003228283.1	Prophage ECO26_P04
YP_003228284.1	Prophage ECO26_P04
YP_003228285.1	Prophage ECO26_P04
YP_003228286.1	Prophage ECO26_P04
YP_003228287.1	Prophage ECO26_P04
YP_003228288.1	Prophage ECO26_P04
YP_003228289.1	Prophage ECO26_P04
YP_003228290.1	Prophage ECO26_P04
YP_003228291.1	Prophage ECO26_P04
YP_003228292.1	Prophage ECO26_P04
YP_003228293.1	Prophage ECO26_P04
YP_003228294.1	Prophage ECO26_P04
YP_003228295.1	Prophage ECO26_P04
YP_003228304.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_003228310.1	Integrative element ECO26_IE02
YP_003228311.1	Integrative element ECO26_IE02
YP_003228312.1	Integrative element ECO26_IE02
YP_003228313.1	Integrative element ECO26_IE02
YP_003228314.1	Integrative element ECO26_IE02
YP_003228315.1	Integrative element ECO26_IE02
YP_003228316.1	Integrative element ECO26_IE02
YP_003228317.1	Integrative element ECO26_IE02; predicted protein Orf3 in insertion sequence ISEc8
YP_003228318.1	Integrative element ECO26_IE02; predicted protein Orf2 in insertion sequence ISEc8
YP_003228319.1	Integrative element ECO26_IE02; predicted protein Orf1 in insertion sequence ISEc8
YP_003228320.1	Integrative element ECO26_IE02
YP_003228321.1	Integrative element ECO26_IE02
YP_003228322.1	Integrative element ECO26_IE02
YP_003228323.1	Integrative element ECO26_IE02
YP_003228324.1	Integrative element ECO26_IE02
YP_003228325.1	Integrative element ECO26_IE02
YP_003228326.1	Integrative element ECO26_IE02
YP_003228327.1	Integrative element ECO26_IE02
YP_003228328.1	Integrative element ECO26_IE02
YP_003228329.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_003228330.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_003228331.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_003228332.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_003228333.1	Integrative element ECO26_IE02
YP_003228334.1	Integrative element ECO26_IE02
YP_003228335.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_003228336.1	Integrative element ECO26_IE02
YP_003228337.1	Integrative element ECO26_IE02
YP_003228338.1	Integrative element ECO26_IE02
YP_003228339.1	Integrative element ECO26_IE02
YP_003228340.1	Integrative element ECO26_IE02; predicted protein Orf1 in insertion sequence IS682
YP_003228341.1	Integrative element ECO26_IE02; predicted protein Orf2 in insertion sequence IS682
YP_003228342.1	Integrative element ECO26_IE02; predicted protein Orf3 in insertion sequence IS682
YP_003228343.1	Integrative element ECO26_IE02
YP_003228344.1	Integrative element ECO26_IE02
YP_003228345.1	Integrative element ECO26_IE02
YP_003228346.1	Integrative element ECO26_IE02
YP_003228347.1	Integrative element ECO26_IE02
YP_003228348.1	Integrative element ECO26_IE02
YP_003228349.1	Integrative element ECO26_IE02
YP_003228350.1	Integrative element ECO26_IE02
YP_003228351.1	Integrative element ECO26_IE02
YP_003228352.1	Integrative element ECO26_IE02
YP_003228353.1	Integrative element ECO26_IE02
YP_003228354.1	Integrative element ECO26_IE02
YP_003228355.1	Integrative element ECO26_IE02
YP_003228356.1	Integrative element ECO26_IE02
YP_003228357.1	Integrative element ECO26_IE02
YP_003228358.1	Integrative element ECO26_IE02
YP_003228359.1	Integrative element ECO26_IE02
YP_003228360.1	Integrative element ECO26_IE02
YP_003228361.1	IrgAue adhesin (Iha); TonB-dependent; acts as a specific receptor of enterobactin; fur-regulated; urovirulence factor
YP_003228362.1	Integrative element ECO26_IE02
YP_003228363.1	Integrative element ECO26_IE02
YP_003228364.1	Integrative element ECO26_IE02
YP_003228365.1	Integrative element ECO26_IE02
YP_003228366.1	Integrative element ECO26_IE02
YP_003228367.1	Integrative element ECO26_IE02
YP_003228368.1	Integrative element ECO26_IE02
YP_003228369.1	Integrative element ECO26_IE02
YP_003228370.1	Integrative element ECO26_IE02
YP_003228371.1	Integrative element ECO26_IE02
YP_003228372.1	Integrative element ECO26_IE02
YP_003228373.1	Integrative element ECO26_IE02
YP_003228374.1	Integrative element ECO26_IE02
YP_003228375.1	Integrative element ECO26_IE02
YP_003228376.1	Integrative element ECO26_IE02
YP_003228377.1	Integrative element ECO26_IE02
YP_003228378.1	Integrative element ECO26_IE02
YP_003228379.1	Integrative element ECO26_IE02
YP_003228380.1	Integrative element ECO26_IE02
YP_003228381.1	Integrative element ECO26_IE02
YP_003228382.1	Integrative element ECO26_IE02
YP_003228383.1	Integrative element ECO26_IE02
YP_003228384.1	Integrative element ECO26_IE02
YP_003228385.1	Integrative element ECO26_IE02
YP_003228386.1	Integrative element ECO26_IE02
YP_003228387.1	Integrative element ECO26_IE02
YP_003228388.1	Integrative element ECO26_IE02
YP_003228389.1	Integrative element ECO26_IE02
YP_003228390.1	Integrative element ECO26_IE02
YP_003228391.1	Integrative element ECO26_IE02
YP_003228392.1	Integrative element ECO26_IE02; predicted protein Orf3 in insertion sequence IS682
YP_003228393.1	Integrative element ECO26_IE02
YP_003228394.1	Integrative element ECO26_IE02
YP_003228395.1	Integrative element ECO26_IE02
YP_003228396.1	Integrative element ECO26_IE02
YP_003228397.1	Integrative element ECO26_IE02
YP_003228398.1	Integrative element ECO26_IE02
YP_003228399.1	Integrative element ECO26_IE02
YP_003228400.1	Integrative element ECO26_IE02
YP_003228401.1	Integrative element ECO26_IE02
YP_003228402.1	Integrative element ECO26_IE02
YP_003228403.1	Integrative element ECO26_IE02
YP_003228404.1	Integrative element ECO26_IE02
YP_003228405.1	Integrative element ECO26_IE02
YP_003228406.1	Integrative element ECO26_IE02
YP_003228407.1	Integrative element ECO26_IE02
YP_003228412.1	nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex
YP_003228413.1	chaperone that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex
YP_003228414.1	activates the csgBA and csgDEFG operons involved in biofilm formation
YP_003228416.1	CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface
YP_003228418.1	involved in autoagglutination of curliated cells; not involved in production of curli fibers
YP_003228422.1	required for the transfer of succinyl residues to the glucan backbone
YP_003228423.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_003228424.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_003228427.1	Confers resistance to fosfomycin and deoxycholate
YP_003228428.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_003228433.1	catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids
YP_003228434.1	BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
YP_003228436.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_003228438.1	cofactor involved in the reduction of disulfides
YP_003228439.1	Confers resistance to norfloxacin and enoxacin
YP_003228442.1	contains NAD(P)-binding Rossmann-fold domain
YP_003228444.1	for FlgK and FlgL
YP_003228445.1	regulates the flagellar specific sigma28 transcription factor
YP_003228446.1	required for the assembly of the flagellar basal body P-ring
YP_003228447.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_003228448.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_003228449.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_003228450.1	the hook connects flagellar basal body to the flagellar filament
YP_003228451.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_003228452.1	makes up the distal portion of the flagellar basal body rod
YP_003228453.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_003228454.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_003228455.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_003228456.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_003228457.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes
YP_003228458.1	bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase
YP_003228460.1	catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA
YP_003228461.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_003228463.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_003228464.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_003228465.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_003228467.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_003228468.1	carries the fatty acid chain in fatty acid biosynthesis
YP_003228469.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_003228470.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_003228472.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_003228473.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_003228475.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003228480.1	catalyzes the phosphorylation of thiamine to thiamine phosphate
YP_003228481.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_003228490.1	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_003228491.1	outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone
YP_003228492.1	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_003228493.1	catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine
YP_003228494.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_003228497.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate
YP_003228498.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component
YP_003228499.1	Prophage ECO26_P05
YP_003228500.1	Prophage ECO26_P05
YP_003228501.1	Prophage ECO26_P05
YP_003228502.1	Prophage ECO26_P05
YP_003228503.1	Prophage ECO26_P05
YP_003228504.1	Prophage ECO26_P05
YP_003228505.1	Prophage ECO26_P05
YP_003228506.1	Prophage ECO26_P05
YP_003228507.1	Prophage ECO26_P05
YP_003228508.1	Prophage ECO26_P05
YP_003228509.1	Prophage ECO26_P05
YP_003228510.1	Prophage ECO26_P05
YP_003228511.1	Prophage ECO26_P05
YP_003228512.1	Prophage ECO26_P05
YP_003228513.1	Prophage ECO26_P05
YP_003228514.1	Prophage ECO26_P05
YP_003228515.1	Prophage ECO26_P05
YP_003228516.1	Prophage ECO26_P05
YP_003228517.1	Prophage ECO26_P05
YP_003228518.1	Prophage ECO26_P05
YP_003228519.1	Prophage ECO26_P05
YP_003228520.1	Prophage ECO26_P05
YP_003228521.1	Prophage ECO26_P05
YP_003228522.1	Prophage ECO26_P05
YP_003228523.1	Prophage ECO26_P05
YP_003228524.1	Prophage ECO26_P05
YP_003228525.1	Prophage ECO26_P05
YP_003228526.1	Prophage ECO26_P05
YP_003228527.1	Prophage ECO26_P05
YP_003228528.1	Prophage ECO26_P05
YP_003228529.1	Prophage ECO26_P05
YP_003228530.1	Prophage ECO26_P05
YP_003228531.1	Prophage ECO26_P05
YP_003228532.1	Prophage ECO26_P05
YP_003228533.1	Prophage ECO26_P05
YP_003228534.1	Prophage ECO26_P05
YP_003228535.1	Prophage ECO26_P05
YP_003228536.1	Prophage ECO26_P05
YP_003228537.1	Prophage ECO26_P05
YP_003228538.1	Prophage ECO26_P05
YP_003228539.1	Prophage ECO26_P05
YP_003228540.1	Prophage ECO26_P05
YP_003228541.1	Prophage ECO26_P05
YP_003228542.1	Prophage ECO26_P05
YP_003228543.1	Prophage ECO26_P05
YP_003228544.1	Prophage ECO26_P05
YP_003228545.1	Prophage ECO26_P05
YP_003228546.1	Prophage ECO26_P05
YP_003228547.1	Prophage ECO26_P05
YP_003228548.1	Prophage ECO26_P05
YP_003228549.1	Prophage ECO26_P05
YP_003228550.1	Prophage ECO26_P05
YP_003228551.1	Prophage ECO26_P05
YP_003228552.1	Prophage ECO26_P05
YP_003228553.1	Prophage ECO26_P05
YP_003228554.1	Prophage ECO26_P05
YP_003228555.1	Prophage ECO26_P05
YP_003228556.1	Prophage ECO26_P05
YP_003228557.1	Prophage ECO26_P05
YP_003228558.1	Prophage ECO26_P05
YP_003228559.1	Prophage ECO26_P05
YP_003228560.1	Prophage ECO26_P05
YP_003228561.1	Prophage ECO26_P05
YP_003228562.1	Prophage ECO26_P05; predicted protein Orf1 in insertion sequence ISCro1
YP_003228563.1	Prophage ECO26_P05; predicted protein Orf2 in insertion sequence ISCro1
YP_003228564.1	Prophage ECO26_P05; predicted protein Orf3 in insertion sequence ISCro1
YP_003228565.1	Prophage ECO26_P05
YP_003228566.1	Prophage ECO26_P05
YP_003228567.1	Prophage ECO26_P05
YP_003228569.1	involved in hydrogen cycling during fermentative growth
YP_003228571.1	HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1)
YP_003228572.1	involved in processing hydrogenase proteins HyaA and HyaB
YP_003228573.1	involved in nickel incorporation into hydrogenase-1 proteins
YP_003228577.1	Etk and Etp are a tyrosine kinase-tyrosine phosphatase pair, etp dephosphorylates etk
YP_003228583.1	member of the CspA-family
YP_003228585.1	suppresses fabA and ts growth mutation
YP_003228588.1	Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide
YP_003228589.1	periplasmic sensory protein associated with the TorRS two-component regulatory system
YP_003228590.1	response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes
YP_003228591.1	TMAO reductase I
YP_003228592.1	TMAO reductase I
YP_003228593.1	TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor
YP_003228594.1	with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA
YP_003228595.1	functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock
YP_003228599.1	Prophage ECO26_P06
YP_003228600.1	Prophage ECO26_P06
YP_003228601.1	Prophage ECO26_P06
YP_003228602.1	Prophage ECO26_P06
YP_003228603.1	Prophage ECO26_P06
YP_003228604.1	Prophage ECO26_P06
YP_003228605.1	Prophage ECO26_P06
YP_003228606.1	Prophage ECO26_P06
YP_003228607.1	Prophage ECO26_P06
YP_003228608.1	Prophage ECO26_P06
YP_003228609.1	Prophage ECO26_P06
YP_003228610.1	Prophage ECO26_P06
YP_003228611.1	Prophage ECO26_P06
YP_003228612.1	Prophage ECO26_P06
YP_003228613.1	Prophage ECO26_P06
YP_003228614.1	Prophage ECO26_P06
YP_003228615.1	Prophage ECO26_P06
YP_003228616.1	Prophage ECO26_P06
YP_003228617.1	Prophage ECO26_P06
YP_003228618.1	Prophage ECO26_P06
YP_003228619.1	Prophage ECO26_P06
YP_003228620.1	Prophage ECO26_P06
YP_003228621.1	Prophage ECO26_P06
YP_003228622.1	Prophage ECO26_P06
YP_003228623.1	Prophage ECO26_P06
YP_003228624.1	Prophage ECO26_P06
YP_003228625.1	Prophage ECO26_P06
YP_003228626.1	Prophage ECO26_P06
YP_003228627.1	Prophage ECO26_P06
YP_003228628.1	Prophage ECO26_P06
YP_003228629.1	Prophage ECO26_P06
YP_003228630.1	Prophage ECO26_P06
YP_003228631.1	Prophage ECO26_P06
YP_003228632.1	Prophage ECO26_P06
YP_003228633.1	Prophage ECO26_P06
YP_003228634.1	Prophage ECO26_P06
YP_003228635.1	Prophage ECO26_P06
YP_003228636.1	Prophage ECO26_P06
YP_003228637.1	Prophage ECO26_P06
YP_003228638.1	Prophage ECO26_P06
YP_003228639.1	Prophage ECO26_P06
YP_003228640.1	Prophage ECO26_P06
YP_003228641.1	Prophage ECO26_P06
YP_003228642.1	Prophage ECO26_P06
YP_003228643.1	Prophage ECO26_P06
YP_003228644.1	Prophage ECO26_P06
YP_003228645.1	Prophage ECO26_P06
YP_003228646.1	Prophage ECO26_P06
YP_003228647.1	Prophage ECO26_P06
YP_003228648.1	Prophage ECO26_P06
YP_003228649.1	Prophage ECO26_P06
YP_003228650.1	Prophage ECO26_P06
YP_003228651.1	Prophage ECO26_P06
YP_003228652.1	Prophage ECO26_P06
YP_003228653.1	Prophage ECO26_P06
YP_003228654.1	Prophage ECO26_P06
YP_003228655.1	Prophage ECO26_P06
YP_003228656.1	Prophage ECO26_P06
YP_003228657.1	Prophage ECO26_P06
YP_003228658.1	Prophage ECO26_P06
YP_003228659.1	Prophage ECO26_P06
YP_003228660.1	Prophage ECO26_P06
YP_003228661.1	Prophage ECO26_P06
YP_003228662.1	Prophage ECO26_P06
YP_003228663.1	Prophage ECO26_P06
YP_003228664.1	Prophage ECO26_P06
YP_003228665.1	Prophage ECO26_P06
YP_003228666.1	Prophage ECO26_P06
YP_003228667.1	Prophage ECO26_P06
YP_003228668.1	Prophage ECO26_P06
YP_003228669.1	Prophage ECO26_P06
YP_003228670.1	Prophage ECO26_P06
YP_003228671.1	Prophage ECO26_P06
YP_003228672.1	Prophage ECO26_P06
YP_003228673.1	Prophage ECO26_P06
YP_003228674.1	Prophage ECO26_P06
YP_003228675.1	Prophage ECO26_P06
YP_003228676.1	Prophage ECO26_P06
YP_003228677.1	Prophage ECO26_P06
YP_003228678.1	Prophage ECO26_P06
YP_003228679.1	Prophage ECO26_P06
YP_003228680.1	Prophage ECO26_P06
YP_003228681.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component
YP_003228682.1	functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase
YP_003228683.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_003228685.1	Prophage ECO26_P07
YP_003228686.1	Prophage ECO26_P07
YP_003228687.1	Prophage ECO26_P07
YP_003228688.1	Prophage ECO26_P07
YP_003228689.1	Prophage ECO26_P07
YP_003228690.1	Prophage ECO26_P07
YP_003228691.1	Prophage ECO26_P07
YP_003228692.1	Prophage ECO26_P07
YP_003228693.1	Prophage ECO26_P07
YP_003228694.1	Prophage ECO26_P07
YP_003228695.1	Prophage ECO26_P07
YP_003228696.1	Prophage ECO26_P07
YP_003228697.1	Prophage ECO26_P07
YP_003228698.1	Prophage ECO26_P07
YP_003228699.1	Prophage ECO26_P07
YP_003228700.1	Prophage ECO26_P07
YP_003228701.1	Prophage ECO26_P07
YP_003228703.1	response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress
YP_003228704.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_003228705.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_003228706.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_003228708.1	catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA
YP_003228709.1	Converts isocitrate to alpha ketoglutarate
YP_003228725.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_003228726.1	ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums
YP_003228727.1	blocks the formation of polar Z-ring septums
YP_003228734.1	Acts by forming a pore-like structure upon contact with mammalian cells
YP_003228735.1	binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
YP_003228736.1	binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization
YP_003228737.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_003228738.1	involved in regulation of intracellular pH under alkaline conditions
YP_003228739.1	Multifunctional regulator of fatty acid metabolism
YP_003228741.1	catalyzes the oxidative deamination of D-amino acids
YP_003228742.1	catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA
YP_003228743.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_003228744.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_003228746.1	involved in flagellar function
YP_003228749.1	periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell
YP_003228750.1	phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL
YP_003228751.1	with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone
YP_003228752.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_003228753.1	Positively regulates the dhaKLM operon from a sigma-70 promoter
YP_003228755.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_003228756.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_003228757.1	YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function
YP_003228758.1	role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_003228759.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_003228760.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_003228761.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_003228762.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_003228763.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_003228764.1	HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB
YP_003228767.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_003228772.1	in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions
YP_003228776.1	two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase
YP_003228780.1	Fe-S subunit
YP_003228781.1	subunit of nitrate reductase 1
YP_003228782.1	cytochrome b(NR) subunit
YP_003228783.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_003228787.1	together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose
YP_003228789.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_003228792.1	periplasmic-binding component of ABC superfamily
YP_003228793.1	membrane component of ABC superfamily
YP_003228794.1	membrane component of ABC superfamily
YP_003228795.1	ATP-binding component of ABC superfamily
YP_003228796.1	ATP-binding component of ABC superfamily
YP_003228797.1	highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone
YP_003228798.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_003228801.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_003228802.1	membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins
YP_003228803.1	YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins
YP_003228804.1	Involved in cell division; probably involved in intracellular septation
YP_003228806.1	receptor for colicin S4
YP_003228807.1	Prophage ECO26_P08
YP_003228808.1	Prophage ECO26_P08
YP_003228809.1	Prophage ECO26_P08
YP_003228810.1	Prophage ECO26_P08
YP_003228811.1	Prophage ECO26_P08
YP_003228812.1	Prophage ECO26_P08
YP_003228813.1	Prophage ECO26_P08
YP_003228814.1	Prophage ECO26_P08
YP_003228815.1	Prophage ECO26_P08
YP_003228816.1	Prophage ECO26_P08
YP_003228817.1	The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown.
YP_003228818.1	Prophage ECO26_P08
YP_003228819.1	Prophage ECO26_P08
YP_003228820.1	Prophage ECO26_P08
YP_003228821.1	Prophage ECO26_P08
YP_003228822.1	Prophage ECO26_P08
YP_003228823.1	Prophage ECO26_P08
YP_003228824.1	Prophage ECO26_P08
YP_003228825.1	Prophage ECO26_P08
YP_003228826.1	Prophage ECO26_P08
YP_003228827.1	Prophage ECO26_P08
YP_003228828.1	Prophage ECO26_P08
YP_003228829.1	Prophage ECO26_P08
YP_003228830.1	Prophage ECO26_P08
YP_003228831.1	Prophage ECO26_P08
YP_003228832.1	Prophage ECO26_P08
YP_003228833.1	Prophage ECO26_P08
YP_003228834.1	Prophage ECO26_P08
YP_003228835.1	Prophage ECO26_P08
YP_003228836.1	Prophage ECO26_P08
YP_003228837.1	Prophage ECO26_P08
YP_003228838.1	Prophage ECO26_P08
YP_003228839.1	Prophage ECO26_P08
YP_003228840.1	Prophage ECO26_P08
YP_003228841.1	Prophage ECO26_P08
YP_003228842.1	Prophage ECO26_P08
YP_003228843.1	Prophage ECO26_P08
YP_003228844.1	Prophage ECO26_P08
YP_003228845.1	Prophage ECO26_P08
YP_003228849.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_003228850.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_003228851.1	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_003228852.1	bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis
YP_003228853.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_003228857.1	catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA
YP_003228858.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_003228859.1	EmrKY-TolC system
YP_003228860.1	SohB; periplasmic protein; member of the peptidase S49 family
YP_003228862.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_003228863.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_003228865.1	Catalyzes the conversion of citrate to isocitrate
YP_003228866.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_003228870.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_003228871.1	involved in start site selection during the initiation of translation
YP_003228875.1	c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP
YP_003228876.1	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
YP_003228878.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_003228882.1	membrane component of ABC superfamily
YP_003228883.1	membrane component of ABC superfamily
YP_003228884.1	periplasmic-binding component of ABC superfamily
YP_003228888.1	catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate
YP_003228889.1	regulates genes involved in putrescine degradation
YP_003228890.1	catalyzes the formation of gamma-glutamyl-gamma-aminobutyrate from Gamma-glutamyl-gamma-aminobutyraldehyde; involved in putrescine degradation
YP_003228892.1	putrescine-inducible GABA aminotransferase; catalyzes the formation of glutamate and succinate semialdehyde from 4-aminobutyrate and 2-oxoglutarate
YP_003228893.1	transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor
YP_003228894.1	involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF
YP_003228895.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_003228896.1	with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock
YP_003228898.1	rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide
YP_003228899.1	periplasmic-binding component of ABC superfamily
YP_003228900.1	membrane component of ABC superfamily
YP_003228901.1	membrane component of ABC superfamily
YP_003228907.1	ATP-binding component of ABC superfamily
YP_003228910.1	contains nucleoside triphosphate hydrolase domain
YP_003228912.1	regulates genes involved in the biosynthesis and transport of aromatic amino acids
YP_003228913.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_003228923.1	with UspC and UspD is involved in resistance to UV irradiation
YP_003228924.1	Global transcription factor that controls the expression of over 100 target genes in response to anoxia
YP_003228931.1	GGDEF domain signalling protein
YP_003228933.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_003228934.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_003228935.1	Prophage ECO26_P09
YP_003228936.1	Prophage ECO26_P09
YP_003228937.1	Rac prophage
YP_003228938.1	Prophage ECO26_P09
YP_003228939.1	The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB, recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA, RecF, RecJ, RecO, RecR, and RuvC.
YP_003228940.1	Rac prophage hypothetical protein
YP_003228941.1	Prophage ECO26_P09
YP_003228942.1	Rac prophage Kil protein; Kil overexpression leads to morphological defects and inhibits cell division
YP_003228943.1	Prophage ECO26_P09
YP_003228944.1	Prophage ECO26_P09
YP_003228945.1	Prophage ECO26_P09
YP_003228946.1	Prophage ECO26_P09
YP_003228947.1	Prophage ECO26_P09
YP_003228948.1	Prophage ECO26_P09
YP_003228949.1	Prophage ECO26_P09
YP_003228950.1	Prophage ECO26_P09
YP_003228951.1	Prophage ECO26_P09
YP_003228952.1	Prophage ECO26_P09
YP_003228953.1	Prophage ECO26_P09
YP_003228954.1	Prophage ECO26_P09
YP_003228955.1	Prophage ECO26_P09
YP_003228956.1	Prophage ECO26_P09
YP_003228957.1	Prophage ECO26_P09
YP_003228958.1	Prophage ECO26_P09
YP_003228959.1	Prophage ECO26_P09
YP_003228960.1	Prophage ECO26_P09
YP_003228961.1	Prophage ECO26_P09
YP_003228962.1	Prophage ECO26_P09
YP_003228963.1	Prophage ECO26_P09
YP_003228964.1	Prophage ECO26_P09
YP_003228965.1	Prophage ECO26_P09
YP_003228966.1	Prophage ECO26_P09
YP_003228967.1	Prophage ECO26_P09
YP_003228968.1	Prophage ECO26_P09
YP_003228969.1	Prophage ECO26_P09
YP_003228970.1	Prophage ECO26_P09
YP_003228971.1	Prophage ECO26_P09
YP_003228972.1	Prophage ECO26_P09
YP_003228973.1	Prophage ECO26_P09
YP_003228974.1	Prophage ECO26_P09
YP_003228975.1	Prophage ECO26_P09
YP_003228976.1	Prophage ECO26_P09
YP_003228977.1	Prophage ECO26_P09
YP_003228978.1	Prophage ECO26_P09
YP_003228979.1	Prophage ECO26_P09
YP_003228980.1	Prophage ECO26_P09
YP_003228981.1	Prophage ECO26_P09
YP_003228982.1	Prophage ECO26_P09
YP_003228983.1	Prophage ECO26_P09
YP_003228984.1	Prophage ECO26_P09
YP_003228985.1	Prophage ECO26_P09
YP_003228986.1	Prophage ECO26_P09
YP_003228987.1	Prophage ECO26_P09
YP_003228988.1	Prophage ECO26_P09
YP_003228989.1	Prophage ECO26_P09
YP_003228990.1	Prophage ECO26_P09
YP_003228991.1	Prophage ECO26_P09
YP_003228992.1	Prophage ECO26_P09
YP_003228993.1	Prophage ECO26_P09
YP_003228994.1	Prophage ECO26_P09
YP_003228995.1	Prophage ECO26_P09
YP_003228996.1	Prophage ECO26_P09
YP_003229006.1	activator of genes involved in phenylacetic acid catabolism
YP_003229008.1	catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine
YP_003229009.1	catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA
YP_003229010.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_003229011.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_003229012.1	for phenylacetic acid degradation
YP_003229013.1	for phenylacetic acid degradation
YP_003229016.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_003229017.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_003229019.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_003229029.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_003229030.1	involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain
YP_003229032.1	NAD-linked
YP_003229034.1	B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm
YP_003229041.1	involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans
YP_003229046.1	with TehA confers resistance to tellurite
YP_003229054.1	periplasmic-binding component of ABC superfamily
YP_003229055.1	ATP-binding component of ABC superfamily
YP_003229056.1	membrane component of ABC superfamily
YP_003229057.1	membrane component of ABC superfamily
YP_003229058.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_003229064.1	contains acyl-CoA N-acyltransferase domain
YP_003229072.1	RhsE
YP_003229073.1	RhsE
YP_003229077.1	NRZ
YP_003229078.1	NRZ, assembly subunit
YP_003229079.1	NRZ
YP_003229080.1	NRZ
YP_003229085.1	codon on position 196 is selenocysteine opal codon
YP_003229086.1	beta subunit
YP_003229087.1	nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase
YP_003229089.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_003229090.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_003229091.1	protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase
YP_003229094.1	ATP-binding component of ABC superfamily
YP_003229095.1	membrane component of ABC superfamily
YP_003229096.1	membrane component of ABC superfamily
YP_003229097.1	periplasmic-binding component of ABC superfamily
YP_003229098.1	catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis
YP_003229099.1	heme-regulated phosphodiesterase with phosphodiesterase activity with cAMP but not with cGMP, bis(p-nitrophenyl) phosphate or p-nitrophenyl phosphate
YP_003229109.1	regulates the cellular response to acid resistance
YP_003229111.1	in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell; involved with increased resistance to low pH; member of the prokaryotic molybdopterin-containing oxidoreductase family
YP_003229127.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_003229130.1	catalyzes the formation of glutamate from glutamine
YP_003229131.1	in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase
YP_003229134.1	protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function
YP_003229135.1	Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes
YP_003229136.1	transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF
YP_003229138.1	converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism
YP_003229145.1	YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters
YP_003229151.1	NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine
YP_003229154.1	Prophage ECO26_P10
YP_003229155.1	Prophage ECO26_P10
YP_003229156.1	Prophage ECO26_P10
YP_003229157.1	Prophage ECO26_P10
YP_003229158.1	Prophage ECO26_P10
YP_003229159.1	Prophage ECO26_P10
YP_003229160.1	Prophage ECO26_P10
YP_003229161.1	Prophage ECO26_P10
YP_003229162.1	Prophage ECO26_P10
YP_003229163.1	Prophage ECO26_P10
YP_003229164.1	Prophage ECO26_P10
YP_003229165.1	Prophage ECO26_P10
YP_003229166.1	Prophage ECO26_P10
YP_003229167.1	Prophage ECO26_P10
YP_003229168.1	Prophage ECO26_P10
YP_003229169.1	Prophage ECO26_P10
YP_003229170.1	Prophage ECO26_P10
YP_003229171.1	Prophage ECO26_P10
YP_003229172.1	Prophage ECO26_P10
YP_003229173.1	Prophage ECO26_P10
YP_003229174.1	Prophage ECO26_P10
YP_003229175.1	Prophage ECO26_P10
YP_003229176.1	Prophage ECO26_P10
YP_003229177.1	Prophage ECO26_P10
YP_003229178.1	Prophage ECO26_P10
YP_003229179.1	Prophage ECO26_P10
YP_003229180.1	Prophage ECO26_P10
YP_003229181.1	Prophage ECO26_P10
YP_003229182.1	Prophage ECO26_P10
YP_003229183.1	Prophage ECO26_P10
YP_003229184.1	Prophage ECO26_P10
YP_003229185.1	Prophage ECO26_P10
YP_003229186.1	Prophage ECO26_P10
YP_003229187.1	Prophage ECO26_P10
YP_003229188.1	Prophage ECO26_P10
YP_003229189.1	Prophage ECO26_P10
YP_003229190.1	Prophage ECO26_P10
YP_003229191.1	Prophage ECO26_P10
YP_003229192.1	Prophage ECO26_P10
YP_003229193.1	Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor
YP_003229194.1	Prophage ECO26_P10
YP_003229195.1	Prophage ECO26_P10
YP_003229196.1	Prophage ECO26_P10; containing rve domain
YP_003229197.1	Prophage ECO26_P10
YP_003229198.1	Prophage ECO26_P10
YP_003229199.1	Prophage ECO26_P10
YP_003229200.1	Prophage ECO26_P10
YP_003229201.1	The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown.
YP_003229202.1	Prophage ECO26_P10
YP_003229203.1	Prophage ECO26_P10
YP_003229204.1	Prophage ECO26_P10
YP_003229205.1	Prophage ECO26_P10
YP_003229206.1	Prophage ECO26_P10
YP_003229207.1	Prophage ECO26_P10; predicted protein Orf3 in insertion sequence ISCro1
YP_003229208.1	Prophage ECO26_P10; predicted protein Orf2 in insertion sequence ISCro1
YP_003229209.1	Prophage ECO26_P10; predicted protein Orf1 in insertion sequence ISCro1
YP_003229210.1	Prophage ECO26_P10
YP_003229211.1	Prophage ECO26_P10
YP_003229212.1	Prophage ECO26_P11
YP_003229213.1	Prophage ECO26_P11
YP_003229214.1	Prophage ECO26_P11
YP_003229215.1	Prophage ECO26_P11
YP_003229216.1	Prophage ECO26_P11
YP_003229217.1	Prophage ECO26_P11
YP_003229218.1	Prophage ECO26_P11
YP_003229219.1	Prophage ECO26_P11
YP_003229220.1	Prophage ECO26_P11
YP_003229221.1	Prophage ECO26_P11
YP_003229222.1	Prophage ECO26_P11
YP_003229223.1	Prophage ECO26_P11
YP_003229224.1	Prophage ECO26_P11
YP_003229225.1	Prophage ECO26_P11
YP_003229226.1	Prophage ECO26_P11
YP_003229227.1	Prophage ECO26_P11
YP_003229228.1	Prophage ECO26_P11
YP_003229229.1	Prophage ECO26_P11
YP_003229230.1	Prophage ECO26_P11
YP_003229231.1	Prophage ECO26_P11
YP_003229232.1	Prophage ECO26_P11
YP_003229233.1	Prophage ECO26_P11
YP_003229234.1	Prophage ECO26_P11
YP_003229235.1	Prophage ECO26_P11
YP_003229236.1	Prophage ECO26_P11
YP_003229237.1	Prophage ECO26_P11
YP_003229238.1	Prophage ECO26_P11
YP_003229239.1	Prophage ECO26_P11
YP_003229240.1	Prophage ECO26_P11
YP_003229241.1	Prophage ECO26_P11
YP_003229242.1	Prophage ECO26_P11; predicted cytoplasmic protein
YP_003229243.1	Prophage ECO26_P11
YP_003229244.1	Prophage ECO26_P11
YP_003229245.1	Prophage ECO26_P11
YP_003229246.1	Prophage ECO26_P11
YP_003229247.1	Prophage ECO26_P11
YP_003229248.1	Prophage ECO26_P11
YP_003229249.1	Prophage ECO26_P11
YP_003229250.1	Prophage ECO26_P11
YP_003229251.1	Prophage ECO26_P11
YP_003229252.1	Prophage ECO26_P11
YP_003229253.1	Prophage ECO26_P11
YP_003229254.1	Prophage ECO26_P11
YP_003229255.1	Prophage ECO26_P11
YP_003229256.1	Prophage ECO26_P11
YP_003229257.1	Prophage ECO26_P11
YP_003229258.1	Prophage ECO26_P11
YP_003229259.1	Prophage ECO26_P11
YP_003229260.1	Prophage ECO26_P11
YP_003229261.1	Prophage ECO26_P11
YP_003229262.1	Prophage ECO26_P11
YP_003229263.1	The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown.
YP_003229264.1	Prophage ECO26_P11
YP_003229265.1	Prophage ECO26_P11
YP_003229266.1	Prophage ECO26_P11
YP_003229267.1	Prophage ECO26_P11
YP_003229268.1	Prophage ECO26_P11
YP_003229269.1	Prophage ECO26_P11
YP_003229270.1	Prophage ECO26_P11
YP_003229271.1	Prophage ECO26_P11
YP_003229272.1	Prophage ECO26_P11
YP_003229273.1	Zinc-binding dehydrogenase, GeneHacker: Min.length=50, Min.score =15, overlap=0.4
YP_003229283.1	binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane
YP_003229285.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_003229289.1	required for growth and survival under moderately acid conditions
YP_003229292.1	with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS
YP_003229293.1	with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS
YP_003229294.1	Prophage ECO26_P12
YP_003229295.1	Prophage ECO26_P12
YP_003229296.1	Prophage ECO26_P12
YP_003229297.1	Prophage ECO26_P12
YP_003229298.1	Prophage ECO26_P12
YP_003229299.1	Prophage ECO26_P12
YP_003229300.1	Prophage ECO26_P12
YP_003229301.1	Prophage ECO26_P12
YP_003229302.1	Prophage ECO26_P12
YP_003229303.1	Prophage ECO26_P12
YP_003229304.1	Prophage ECO26_P12
YP_003229305.1	Prophage ECO26_P12
YP_003229306.1	Prophage ECO26_P12
YP_003229307.1	Prophage ECO26_P12
YP_003229308.1	Prophage ECO26_P12
YP_003229309.1	Prophage ECO26_P12
YP_003229310.1	Prophage ECO26_P12
YP_003229311.1	Prophage ECO26_P12
YP_003229312.1	Prophage ECO26_P12
YP_003229313.1	Prophage ECO26_P12
YP_003229314.1	Prophage ECO26_P12
YP_003229315.1	Prophage ECO26_P12
YP_003229316.1	Prophage ECO26_P12
YP_003229317.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_003229318.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_003229322.1	associated with alginate biosynthesis
YP_003229323.1	response regulator in two-component regulatory system with RstB
YP_003229325.1	binds to DNA replication terminator sequences to prevent passage of replication forks
YP_003229326.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_003229327.1	fumarase A
YP_003229334.1	Acts on the hydroxyl group at position 7 of the steroid frame
YP_003229335.1	regulates malXY which are involved in maltose-glucose transport
YP_003229336.1	phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site
YP_003229338.1	catalyzes the formation of inosine from adenosine
YP_003229341.1	YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes
YP_003229344.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_003229345.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_003229346.1	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents
YP_003229347.1	part of membrane-bound complex hought to be involved in electron transport to nitrogen
YP_003229348.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_003229349.1	DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines
YP_003229350.1	mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation
YP_003229352.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_003229353.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_003229354.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_003229355.1	MliC; membrane-bound lysozyme inhibitor of c-type lysozyme
YP_003229356.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_003229358.1	Transcription regulator that can both activate or repress expression
YP_003229362.1	[Cu-Zn]; SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water
YP_003229366.1	FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide
YP_003229367.1	Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione
YP_003229368.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_003229369.1	similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli
YP_003229372.1	SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals
YP_003229375.1	binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers
YP_003229377.1	uncharacterized member of the major facilitator superfamily (MFS)
YP_003229378.1	catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge
YP_003229379.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_003229380.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_003229383.1	contains FAD/NAD(P)-binding domain
YP_003229391.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003229394.1	Acts with SufS to catalyze the formation of L-alanine from L-cysteine
YP_003229395.1	catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine
YP_003229396.1	with SufBC activates cysteine desulfurase SufS
YP_003229397.1	part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE
YP_003229398.1	with SufCD activates cysteine desulfurase SufS
YP_003229399.1	functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein
YP_003229403.1	YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function
YP_003229407.1	YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate
YP_003229408.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_003229409.1	may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain
YP_003229411.1	YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain
YP_003229412.1	May play a role in a redox process
YP_003229413.1	contains FAD/NAD(P)-binding domain
YP_003229415.1	acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids
YP_003229416.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003229418.1	tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_003229423.1	ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell
YP_003229424.1	similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane
YP_003229425.1	with BtuD and BtuF transports vitamin B12 into the cell
YP_003229426.1	Prophage ECO26_P13
YP_003229427.1	Prophage ECO26_P13
YP_003229428.1	Prophage ECO26_P13
YP_003229429.1	Prophage ECO26_P13
YP_003229430.1	Prophage ECO26_P13
YP_003229431.1	Prophage ECO26_P13
YP_003229432.1	Prophage ECO26_P13
YP_003229433.1	Prophage ECO26_P13
YP_003229434.1	Prophage ECO26_P13
YP_003229435.1	Prophage ECO26_P13
YP_003229436.1	Prophage ECO26_P13
YP_003229437.1	Prophage ECO26_P13
YP_003229438.1	Prophage ECO26_P13
YP_003229439.1	Prophage ECO26_P13
YP_003229440.1	Prophage ECO26_P13
YP_003229441.1	Prophage ECO26_P13
YP_003229442.1	Prophage ECO26_P13
YP_003229443.1	Prophage ECO26_P13
YP_003229444.1	Prophage ECO26_P13
YP_003229445.1	Prophage ECO26_P13
YP_003229446.1	Prophage ECO26_P13
YP_003229447.1	Prophage ECO26_P13
YP_003229448.1	Prophage ECO26_P13
YP_003229449.1	Prophage ECO26_P13
YP_003229450.1	Prophage ECO26_P13
YP_003229451.1	Prophage ECO26_P13
YP_003229452.1	Prophage ECO26_P13
YP_003229453.1	Prophage ECO26_P13
YP_003229454.1	Prophage ECO26_P13
YP_003229455.1	Prophage ECO26_P13
YP_003229456.1	Prophage ECO26_P13
YP_003229457.1	Prophage ECO26_P13
YP_003229458.1	Prophage ECO26_P13
YP_003229459.1	Prophage ECO26_P13
YP_003229460.1	Prophage ECO26_P13
YP_003229461.1	Prophage ECO26_P13
YP_003229462.1	Prophage ECO26_P13
YP_003229463.1	Prophage ECO26_P13
YP_003229464.1	Prophage ECO26_P13
YP_003229465.1	Prophage ECO26_P13
YP_003229466.1	Prophage ECO26_P13
YP_003229467.1	Prophage ECO26_P13
YP_003229468.1	Prophage ECO26_P13
YP_003229469.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_003229470.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_003229471.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_003229473.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_003229475.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_003229476.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003229483.1	YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate
YP_003229487.1	Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide
YP_003229491.1	represses the celABCDF-ydjC operon involved in carbon uptake
YP_003229492.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake
YP_003229493.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake
YP_003229494.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake
YP_003229495.1	osmotically-inducible lipoprotein E; activator of ntr-like gene protein
YP_003229496.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_003229497.1	3' incision activity; acts with UvrC
YP_003229499.1	periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP
YP_003229500.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_003229501.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_003229502.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_003229504.1	catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate
YP_003229505.1	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
YP_003229512.1	ATP-binding component of ABC superfamily
YP_003229517.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_003229519.1	decatenates replicating daughter chromosomes
YP_003229520.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_003229522.1	SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane
YP_003229523.1	converts asparagine to aspartate and ammonia
YP_003229524.1	catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide
YP_003229526.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_003229530.1	for murein synthesizing machinery
YP_003229531.1	contains nucleoside triphosphate hydrolase domain
YP_003229551.1	member of the betaine, carnitine, choline transporter (BCCT) family; unknown function
YP_003229555.1	Activates fatty acids by binding to coenzyme A
YP_003229558.1	contains nucleoside triphosphate hydrolase domain
YP_003229570.1	hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel
YP_003229572.1	membrane protein YebN
YP_003229573.1	methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth
YP_003229574.1	member of the CspA-family
YP_003229580.1	metalloprotease
YP_003229581.1	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3
YP_003229582.1	affects solute and DNA transport through an unknown mechanism
YP_003229586.1	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA
YP_003229589.1	Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins
YP_003229590.1	Prophage ECO26_P14
YP_003229591.1	Prophage ECO26_P14
YP_003229592.1	Prophage ECO26_P14
YP_003229593.1	Prophage ECO26_P14
YP_003229594.1	Prophage ECO26_P14
YP_003229595.1	Prophage ECO26_P14; predicted protein Orf3 in insertion sequence ISEc22
YP_003229596.1	Prophage ECO26_P14; predicted protein Orf2 in insertion sequence ISEc22
YP_003229597.1	Prophage ECO26_P14; predicted protein Orf1 in insertion sequence ISEc22
YP_003229598.1	Prophage ECO26_P14
YP_003229599.1	Prophage ECO26_P14
YP_003229600.1	Prophage ECO26_P14
YP_003229601.1	Prophage ECO26_P14
YP_003229602.1	Prophage ECO26_P14
YP_003229603.1	Prophage ECO26_P14
YP_003229604.1	Prophage ECO26_P14
YP_003229605.1	Prophage ECO26_P14
YP_003229606.1	Prophage ECO26_P14
YP_003229607.1	Prophage ECO26_P14
YP_003229608.1	Prophage ECO26_P14
YP_003229609.1	Prophage ECO26_P14
YP_003229610.1	Prophage ECO26_P14
YP_003229611.1	Prophage ECO26_P14
YP_003229612.1	Prophage ECO26_P14
YP_003229613.1	Prophage ECO26_P14
YP_003229614.1	Prophage ECO26_P14
YP_003229615.1	Prophage ECO26_P14
YP_003229616.1	Prophage ECO26_P14
YP_003229617.1	Prophage ECO26_P14
YP_003229618.1	Prophage ECO26_P14
YP_003229619.1	Prophage ECO26_P14
YP_003229620.1	Prophage ECO26_P14
YP_003229621.1	Prophage ECO26_P14
YP_003229622.1	Prophage ECO26_P14
YP_003229623.1	Prophage ECO26_P14
YP_003229624.1	Prophage ECO26_P14
YP_003229625.1	Prophage ECO26_P14
YP_003229626.1	Prophage ECO26_P14
YP_003229627.1	Prophage ECO26_P14
YP_003229628.1	Prophage ECO26_P14
YP_003229629.1	Prophage ECO26_P14
YP_003229630.1	Prophage ECO26_P14
YP_003229631.1	Prophage ECO26_P14
YP_003229632.1	Prophage ECO26_P14
YP_003229633.1	Prophage ECO26_P14
YP_003229634.1	Prophage ECO26_P14
YP_003229635.1	Prophage ECO26_P14
YP_003229636.1	Prophage ECO26_P14
YP_003229637.1	Prophage ECO26_P14
YP_003229638.1	Prophage ECO26_P14
YP_003229639.1	Prophage ECO26_P14
YP_003229640.1	Prophage ECO26_P14
YP_003229641.1	Prophage ECO26_P14
YP_003229642.1	Prophage ECO26_P14
YP_003229643.1	Prophage ECO26_P14
YP_003229644.1	Prophage ECO26_P14
YP_003229645.1	Prophage ECO26_P14
YP_003229646.1	Prophage ECO26_P14
YP_003229647.1	Rac prophage Kil protein; Kil overexpression leads to morphological defects and inhibits cell division
YP_003229648.1	Prophage ECO26_P14
YP_003229649.1	Rac prophage hypothetical protein
YP_003229650.1	The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB, recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA, RecF, RecJ, RecO, RecR, and RuvC.
YP_003229651.1	Prophage ECO26_P14
YP_003229652.1	seems to be involved in restriction alleviation and enhancement of modification by EcoKI, but not in restriction alleviation of type III restriction systems; Rac prophage
YP_003229653.1	Rac prophage
YP_003229654.1	Prophage ECO26_P14
YP_003229655.1	Prophage ECO26_P14
YP_003229661.1	3'-5' exonuclease activity on single or double-strand DNA
YP_003229662.1	PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues
YP_003229664.1	secreted protein; unknown function
YP_003229666.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_003229667.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_003229668.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_003229669.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_003229670.1	Represses the expression of the zwf, eda, glp and gap
YP_003229671.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003229676.1	membrane component of ABC superfamily
YP_003229677.1	membrane component of ABC superfamily
YP_003229678.1	periplasmic-binding component of ABC superfamily
YP_003229682.1	ATP-binding component of ABC superfamily
YP_003229686.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_003229688.1	involved in transport of zinc(II) with ZnuA and C
YP_003229689.1	involved in transport of zinc(II) with ZnuA and C
YP_003229690.1	involved in transport of zinc(II) with ZnuA and C
YP_003229691.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_003229692.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_003229694.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_003229696.1	converts dATP to dAMP and pyrophosphate
YP_003229697.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_003229707.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_003229710.1	membrane protein involved in the flagellar export apparatus
YP_003229711.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_003229712.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_003229713.1	chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble
YP_003229714.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_003229715.1	methylates the MCP
YP_003229716.1	mediates taxis toward dipeptides
YP_003229719.1	chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component
YP_003229720.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003229721.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003229722.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_003229723.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_003229724.1	ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
YP_003229726.1	biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature
YP_003229727.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_003229728.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_003229729.1	periplasmic-binding component of ABC superfamily
YP_003229733.1	cytoplasmic iron storage protein
YP_003229737.1	Prophage ECO26_P15
YP_003229738.1	Prophage ECO26_P15
YP_003229739.1	Prophage ECO26_P15
YP_003229740.1	Prophage ECO26_P15
YP_003229741.1	Prophage ECO26_P15
YP_003229742.1	Prophage ECO26_P15
YP_003229743.1	Prophage ECO26_P15
YP_003229744.1	Prophage ECO26_P15
YP_003229745.1	Prophage ECO26_P15
YP_003229746.1	Prophage ECO26_P15
YP_003229747.1	Prophage ECO26_P15
YP_003229748.1	Prophage ECO26_P15
YP_003229749.1	Prophage ECO26_P15
YP_003229750.1	Prophage ECO26_P15
YP_003229751.1	Prophage ECO26_P15
YP_003229752.1	Prophage ECO26_P15
YP_003229753.1	Prophage ECO26_P15
YP_003229754.1	Prophage ECO26_P15
YP_003229755.1	Prophage ECO26_P15
YP_003229756.1	Prophage ECO26_P15
YP_003229757.1	Prophage ECO26_P15
YP_003229758.1	Prophage ECO26_P15
YP_003229759.1	Prophage ECO26_P15
YP_003229760.1	Prophage ECO26_P15
YP_003229761.1	Prophage ECO26_P15
YP_003229762.1	Prophage ECO26_P15
YP_003229763.1	Prophage ECO26_P15
YP_003229764.1	Prophage ECO26_P15
YP_003229765.1	Prophage ECO26_P15
YP_003229766.1	Prophage ECO26_P15
YP_003229767.1	Prophage ECO26_P15
YP_003229768.1	Prophage ECO26_P15
YP_003229769.1	Prophage ECO26_P15
YP_003229770.1	Prophage ECO26_P15
YP_003229771.1	Prophage ECO26_P15
YP_003229772.1	Prophage ECO26_P15
YP_003229773.1	Prophage ECO26_P15
YP_003229774.1	Prophage ECO26_P15
YP_003229775.1	Prophage ECO26_P15
YP_003229776.1	Prophage ECO26_P15
YP_003229777.1	Prophage ECO26_P15
YP_003229778.1	Prophage ECO26_P15
YP_003229779.1	Prophage ECO26_P15
YP_003229780.1	Prophage ECO26_P15
YP_003229781.1	Prophage ECO26_P15
YP_003229782.1	Prophage ECO26_P15
YP_003229784.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_003229785.1	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system
YP_003229787.1	regulates genes involved in cell division
YP_003229788.1	ATP-binding component of ABC superfamily
YP_003229789.1	membrane component of ABC superfamily
YP_003229790.1	catalyzes the formation of pyruvate from D-cysteine
YP_003229791.1	periplasmic-binding component of ABC superfamily
YP_003229792.1	expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence
YP_003229793.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_003229795.1	involved in flagellin assembly
YP_003229796.1	flagellin specific chaperone
YP_003229797.1	binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family
YP_003229798.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_003229803.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_003229804.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_003229805.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003229806.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_003229807.1	involved in type III protein export during flagellum assembly
YP_003229808.1	rod/hook and filament chaperone
YP_003229810.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_003229811.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_003229812.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_003229813.1	with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus
YP_003229814.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_003229815.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_003229816.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_003229820.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_003229827.1	prophage-like element SpLE1
YP_003229829.1	induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced
YP_003229831.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_003229832.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_003229835.1	Integrative element ECO26_IE03
YP_003229836.1	ATP-binding component of ABC superfamily; Integrative element ECO26_IE03
YP_003229837.1	Integrative element ECO26_IE03
YP_003229838.1	Integrative element ECO26_IE03
YP_003229839.1	Integrative element ECO26_IE03
YP_003229840.1	Integrative element ECO26_IE03
YP_003229841.1	Integrative element ECO26_IE03
YP_003229842.1	Integrative element ECO26_IE03
YP_003229843.1	Integrative element ECO26_IE03
YP_003229844.1	Integrative element ECO26_IE03
YP_003229847.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_003229850.1	Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation
YP_003229851.1	contains NAD(P)-binding Rossmann-fold domain
YP_003229852.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_003229853.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_003229854.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_003229862.1	predicted protein Orf3 in insertion sequence ISEc8
YP_003229863.1	predicted protein Orf2 in insertion sequence ISEc8
YP_003229864.1	predicted protein Orf1 in insertion sequence ISEc8
YP_003229868.1	predicted protein Orf3 in insertion sequence ISEc22
YP_003229869.1	predicted protein Orf2 in insertion sequence ISEc22
YP_003229870.1	predicted protein Orf1 in insertion sequence ISEc22
YP_003229883.1	removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_003229884.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_003229889.1	contains NAD(P)-binding Rossmann-fold domain
YP_003229891.1	Antitoxin that counteracts the effect of the YoeB toxin
YP_003229893.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_003229894.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_003229895.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_003229896.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_003229897.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_003229898.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_003229899.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_003229900.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_003229903.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_003229914.1	with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose
YP_003229915.1	NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose
YP_003229916.1	together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose
YP_003229917.1	WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid
YP_003229921.1	WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid
YP_003229928.1	acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit)
YP_003229930.1	essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance
YP_003229932.1	acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium
YP_003229934.1	Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide)
YP_003229935.1	Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis
YP_003229936.1	required for capsular polysaccharide translocation through the outer membrane
YP_003229938.1	YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs
YP_003229939.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_003229940.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_003229941.1	inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine
YP_003229945.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_003229946.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_003229947.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate
YP_003229950.1	response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport
YP_003229956.1	cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role
YP_003229959.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003229960.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003229962.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_003229963.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate
YP_003229969.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_003229970.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_003229972.1	membrane protein conferring nickel and cobalt resistance
YP_003229980.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_003229984.1	ATP-binding component of ABC superfamily
YP_003229988.1	predicted protein Orf1 in insertion sequence ISEc8
YP_003229989.1	predicted protein Orf2 in insertion sequence ISEc8
YP_003229991.1	unknown function; when overproduced it confers drug-resistance
YP_003229993.1	membrane component of ABC superfamily
YP_003229994.1	ATP-binding component of ABC superfamily
YP_003229995.1	membrane component of ABC superfamily
YP_003229996.1	periplasmic-binding component of ABC superfamily
YP_003229998.1	component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent
YP_003229999.1	specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7
YP_003230002.1	contains NAD(P)-binding Rossmann-fold domain
YP_003230003.1	may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
YP_003230007.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_003230010.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_003230011.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_003230012.1	ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex
YP_003230013.1	with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains
YP_003230014.1	receptor for galactose taxis; periplasmic-binding component of ABC superfamily
YP_003230015.1	negative regulator of the mglBAC operon for galactose utilization
YP_003230017.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_003230019.1	Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein
YP_003230023.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_003230026.1	Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively
YP_003230027.1	activator of nucleoside metabolism
YP_003230031.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003230032.1	converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers
YP_003230033.1	phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr
YP_003230036.1	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_003230040.1	by similarity, Spr seems to have peptidase activity; involved in thermoresistance
YP_003230042.1	periplasmic-binding component of ABC superfamily
YP_003230043.1	membrane component of ABC superfamily
YP_003230044.1	membrane component of ABC superfamily
YP_003230047.1	Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance
YP_003230048.1	catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA
YP_003230050.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_003230054.1	Prophage ECO26_P16
YP_003230055.1	Prophage ECO26_P16
YP_003230056.1	Prophage ECO26_P16
YP_003230057.1	Prophage ECO26_P16
YP_003230058.1	Prophage ECO26_P16
YP_003230059.1	Prophage ECO26_P16
YP_003230060.1	Prophage ECO26_P16
YP_003230061.1	Prophage ECO26_P16
YP_003230062.1	Prophage ECO26_P16
YP_003230063.1	Prophage ECO26_P16
YP_003230064.1	Prophage ECO26_P16
YP_003230065.1	Prophage ECO26_P16
YP_003230066.1	Prophage ECO26_P16
YP_003230067.1	Prophage ECO26_P16
YP_003230068.1	Prophage ECO26_P16
YP_003230069.1	Prophage ECO26_P16
YP_003230071.1	nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes
YP_003230075.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_003230077.1	membrane component of ABC superfamily
YP_003230078.1	membrane component of ABC superfamily
YP_003230079.1	ATP-binding protein; required for proper cytochrome c maturation
YP_003230080.1	with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone
YP_003230081.1	small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA
YP_003230082.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA
YP_003230083.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway
YP_003230084.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_003230086.1	Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.
YP_003230088.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_003230089.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_003230090.1	efflux pump for the antibacterial peptide microcin J25
YP_003230091.1	for N1-methyladenine or N3-methylcytosine DNA lesions
YP_003230093.1	catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway
YP_003230094.1	allows for ions and hydrophilic solutes to cross the outer membrane
YP_003230096.1	two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF
YP_003230101.1	Prophage ECO26_P17
YP_003230102.1	Prophage ECO26_P17
YP_003230103.1	Prophage ECO26_P17
YP_003230104.1	Prophage ECO26_P17
YP_003230105.1	Prophage ECO26_P17
YP_003230106.1	Prophage ECO26_P17; predicted protein Orf3 in insertion sequence ISEc22
YP_003230107.1	Prophage ECO26_P17; predicted protein Orf2 in insertion sequence ISEc22
YP_003230108.1	Prophage ECO26_P17; predicted protein Orf1 in insertion sequence ISEc22
YP_003230109.1	Prophage ECO26_P17
YP_003230110.1	Prophage ECO26_P17
YP_003230111.1	Prophage ECO26_P17
YP_003230112.1	Prophage ECO26_P17
YP_003230113.1	Prophage ECO26_P17
YP_003230114.1	Prophage ECO26_P17
YP_003230115.1	Prophage ECO26_P17
YP_003230116.1	Prophage ECO26_P17
YP_003230117.1	Prophage ECO26_P17
YP_003230118.1	Prophage ECO26_P17
YP_003230119.1	Prophage ECO26_P17
YP_003230120.1	Prophage ECO26_P17
YP_003230121.1	Prophage ECO26_P17
YP_003230122.1	Prophage ECO26_P17
YP_003230123.1	Prophage ECO26_P17
YP_003230124.1	Prophage ECO26_P17
YP_003230125.1	Prophage ECO26_P17
YP_003230126.1	Prophage ECO26_P17
YP_003230127.1	Prophage ECO26_P17
YP_003230128.1	Prophage ECO26_P17
YP_003230129.1	Prophage ECO26_P17
YP_003230130.1	Prophage ECO26_P17
YP_003230131.1	Prophage ECO26_P17
YP_003230132.1	Prophage ECO26_P17
YP_003230133.1	Prophage ECO26_P17
YP_003230134.1	Prophage ECO26_P17
YP_003230135.1	Prophage ECO26_P17
YP_003230136.1	Prophage ECO26_P17
YP_003230137.1	Prophage ECO26_P17
YP_003230138.1	Prophage ECO26_P17
YP_003230139.1	Prophage ECO26_P17
YP_003230140.1	Prophage ECO26_P17
YP_003230141.1	Prophage ECO26_P17
YP_003230142.1	Prophage ECO26_P17
YP_003230143.1	Prophage ECO26_P17
YP_003230144.1	Prophage ECO26_P17
YP_003230145.1	Prophage ECO26_P17
YP_003230146.1	Prophage ECO26_P17
YP_003230147.1	Prophage ECO26_P17
YP_003230148.1	Prophage ECO26_P17
YP_003230149.1	Prophage ECO26_P17
YP_003230150.1	Prophage ECO26_P17
YP_003230151.1	Prophage ECO26_P17
YP_003230152.1	Prophage ECO26_P17
YP_003230153.1	Prophage ECO26_P17
YP_003230154.1	Prophage ECO26_P17
YP_003230155.1	Prophage ECO26_P17
YP_003230156.1	Prophage ECO26_P17
YP_003230157.1	Prophage ECO26_P17
YP_003230158.1	Prophage ECO26_P17
YP_003230159.1	Prophage ECO26_P17
YP_003230160.1	Prophage ECO26_P17
YP_003230161.1	Prophage ECO26_P17
YP_003230162.1	Prophage ECO26_P17
YP_003230163.1	Prophage ECO26_P17
YP_003230164.1	Prophage ECO26_P17
YP_003230165.1	Prophage ECO26_P17
YP_003230166.1	Prophage ECO26_P17
YP_003230167.1	Prophage ECO26_P17
YP_003230168.1	Prophage ECO26_P17
YP_003230169.1	Prophage ECO26_P17
YP_003230170.1	Prophage ECO26_P17
YP_003230172.1	negatively supercoils closed circular double-stranded DNA
YP_003230173.1	Involved in ubiquinone biosynthesis
YP_003230175.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_003230176.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_003230177.1	plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases
YP_003230180.1	hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic
YP_003230181.1	catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell
YP_003230182.1	anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor
YP_003230183.1	sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters
YP_003230184.1	anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate
YP_003230190.1	catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose
YP_003230191.1	catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate
YP_003230192.1	Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains
YP_003230194.1	catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A
YP_003230199.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_003230200.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_003230201.1	catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA
YP_003230202.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_003230205.1	contains acyl-CoA N-acyltransferase domain
YP_003230206.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_003230207.1	ElaD; specific cysteine protease which targets ubiquitin and ubiquitins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system
YP_003230211.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230212.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230213.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003230214.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230215.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230216.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230217.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230218.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230219.1	shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_003230220.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230221.1	NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms
YP_003230222.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_003230223.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003230225.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_003230231.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_003230232.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_003230238.1	catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate
YP_003230239.1	contains NAD(P)-binding Rossmann-fold domain
YP_003230241.1	ATP-binding component of ABC superfamily
YP_003230242.1	membrane component of ABC superfamily
YP_003230243.1	membrane component of ABC superfamily
YP_003230244.1	membrane component of ABC superfamily
YP_003230245.1	ABC superfamily
YP_003230246.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_003230247.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_003230248.1	membrane protein required for colicin V production
YP_003230251.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_003230253.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_003230256.1	in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein
YP_003230258.1	FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_003230259.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_003230263.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_003230264.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_003230265.1	involved in methylation of ribosomal protein L3
YP_003230275.1	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate
YP_003230276.1	FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth
YP_003230282.1	Prophage ECO26_P18
YP_003230283.1	Prophage ECO26_P18
YP_003230284.1	Prophage ECO26_P18
YP_003230285.1	Prophage ECO26_P18
YP_003230286.1	Prophage ECO26_P18
YP_003230287.1	Prophage ECO26_P18
YP_003230288.1	Prophage ECO26_P18
YP_003230289.1	Prophage ECO26_P18
YP_003230290.1	Prophage ECO26_P18
YP_003230291.1	Prophage ECO26_P18
YP_003230292.1	Prophage ECO26_P18
YP_003230293.1	Prophage ECO26_P18
YP_003230294.1	Prophage ECO26_P18
YP_003230295.1	Prophage ECO26_P18
YP_003230296.1	Prophage ECO26_P18
YP_003230297.1	Prophage ECO26_P18
YP_003230298.1	Prophage ECO26_P18
YP_003230299.1	Prophage ECO26_P18
YP_003230300.1	Prophage ECO26_P18
YP_003230301.1	Prophage ECO26_P18
YP_003230302.1	Prophage ECO26_P18
YP_003230303.1	Prophage ECO26_P18
YP_003230304.1	Prophage ECO26_P18
YP_003230305.1	Prophage ECO26_P18
YP_003230306.1	Prophage ECO26_P18
YP_003230307.1	Prophage ECO26_P18
YP_003230308.1	Prophage ECO26_P18
YP_003230309.1	Prophage ECO26_P18
YP_003230310.1	Prophage ECO26_P18
YP_003230311.1	Prophage ECO26_P18
YP_003230312.1	Prophage ECO26_P18
YP_003230313.1	Prophage ECO26_P18
YP_003230314.1	Prophage ECO26_P18
YP_003230315.1	Prophage ECO26_P18
YP_003230316.1	Prophage ECO26_P18
YP_003230317.1	Prophage ECO26_P18
YP_003230318.1	Prophage ECO26_P18
YP_003230319.1	Prophage ECO26_P18
YP_003230320.1	Prophage ECO26_P18
YP_003230321.1	Prophage ECO26_P18
YP_003230322.1	Prophage ECO26_P18
YP_003230323.1	Prophage ECO26_P18
YP_003230324.1	Prophage ECO26_P18
YP_003230325.1	Prophage ECO26_P18
YP_003230326.1	Prophage ECO26_P18
YP_003230327.1	Prophage ECO26_P18
YP_003230328.1	Prophage ECO26_P18
YP_003230329.1	Prophage ECO26_P18
YP_003230330.1	Prophage ECO26_P18
YP_003230331.1	Prophage ECO26_P18
YP_003230332.1	Prophage ECO26_P18
YP_003230333.1	Prophage ECO26_P18
YP_003230334.1	Prophage ECO26_P18
YP_003230335.1	Prophage ECO26_P18
YP_003230336.1	Prophage ECO26_P18
YP_003230337.1	Prophage ECO26_P18
YP_003230338.1	Prophage ECO26_P18
YP_003230339.1	Prophage ECO26_P18
YP_003230340.1	Integrative element ECO26_IE04
YP_003230341.1	Integrative element ECO26_IE04
YP_003230342.1	Integrative element ECO26_IE04
YP_003230343.1	Integrative element ECO26_IE04
YP_003230344.1	Integrative element ECO26_IE04
YP_003230345.1	Integrative element ECO26_IE04
YP_003230346.1	Integrative element ECO26_IE04; predicted protein Orf1 in insertion sequence ISCro1
YP_003230347.1	Integrative element ECO26_IE04; predicted protein Orf2 in insertion sequence ISCro1
YP_003230348.1	Integrative element ECO26_IE04; predicted protein Orf3 in insertion sequence ISCro1
YP_003230349.1	Integrative element ECO26_IE04
YP_003230350.1	Integrative element ECO26_IE04
YP_003230351.1	Integrative element ECO26_IE04
YP_003230352.1	Integrative element ECO26_IE04
YP_003230353.1	Integrative element ECO26_IE04
YP_003230354.1	Integrative element ECO26_IE04
YP_003230355.1	Integrative element ECO26_IE04
YP_003230356.1	Integrative element ECO26_IE04
YP_003230357.1	Integrative element ECO26_IE04
YP_003230358.1	Integrative element ECO26_IE04
YP_003230359.1	Integrative element ECO26_IE04
YP_003230360.1	Integrative element ECO26_IE04
YP_003230361.1	Integrative element ECO26_IE04
YP_003230362.1	lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments
YP_003230363.1	phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least
YP_003230366.1	catalyzes the formation of pyruvate from serine
YP_003230369.1	response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance
YP_003230372.1	member of the AEC family of auxin efflux transporters; unknown function
YP_003230373.1	catalyzes the formation of formyl-CoA from oxalyl-CoA
YP_003230374.1	catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA
YP_003230376.1	involved in colanic acid biosynthesis
YP_003230378.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock
YP_003230384.1	metalloprotein
YP_003230385.1	Xaa-Pro aminopeptidase; limited methionine aminopeptidase
YP_003230388.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_003230396.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_003230399.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_003230404.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_003230405.1	interacts with cell division protein FitsZ and may be required to anchor septal ring structure
YP_003230406.1	role in sulfur assimilation
YP_003230407.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_003230408.1	Hpr
YP_003230409.1	Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system
YP_003230410.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_003230411.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_003230413.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_003230414.1	ATP-binding component of ABC superfamily
YP_003230415.1	Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import
YP_003230416.1	membrane component of ABC superfamily
YP_003230417.1	periplasmic-binding component of ABC superfamily
YP_003230418.1	sulfate metabolism protein
YP_003230420.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_003230421.1	belongs to PEP-dependent PTS system; contains the PTS EIIBC domains; involved in uptake of exogenous N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme IIA-glucose component
YP_003230426.1	contains acyl-CoA N-acyltransferase domain
YP_003230428.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_003230429.1	activates the transcription of the ethanolamine utilization operon
YP_003230430.1	predicted role in ethanolamine utilization
YP_003230431.1	predicted role in ethanolamine utilization
YP_003230432.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_003230434.1	ethanolamine utilization protein EutA
YP_003230436.1	ethanolamine utilization
YP_003230437.1	ethanolamine utilization protein
YP_003230438.1	ethanolamine utilization protein
YP_003230439.1	ethanolamine utilization protein
YP_003230440.1	ethanolamine utilization protein
YP_003230441.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_003230442.1	ethanolamine utilization
YP_003230444.1	contains nucleoside triphosphate hydrolase domain
YP_003230445.1	predicted role in ethanol utilization
YP_003230446.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_003230448.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_003230451.1	unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)
YP_003230452.1	in two-component regulatory system with NarP (NarL)
YP_003230455.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_003230457.1	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate
YP_003230460.1	stability determinant protein
YP_003230462.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_003230464.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_003230465.1	negative transcriptional regulator of the gcvTHP operon
YP_003230466.1	bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine
YP_003230471.1	interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide
YP_003230474.1	probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far
YP_003230477.1	inner membrane protein presumed to act as a formate transporter; member of the hyf operon
YP_003230481.1	controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP
YP_003230483.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_003230484.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_003230485.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_003230486.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_003230492.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_003230493.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_003230494.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_003230496.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_003230497.1	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis
YP_003230499.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_003230500.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_003230502.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_003230503.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_003230504.1	penicillin-insensitive transglycosylase/transpeptidase
YP_003230506.1	catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds
YP_003230507.1	enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I
YP_003230508.1	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide
YP_003230511.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_003230512.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_003230513.1	forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein
YP_003230515.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_003230516.1	regulates the expression of the iscRSUA operon
YP_003230521.1	transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters
YP_003230522.1	activator of 3-phenylpropionic acid catabolism
YP_003230526.1	Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate
YP_003230531.1	membrane component of ABC superfamily
YP_003230533.1	periplasmic-binding component of ABC superfamily
YP_003230536.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_003230537.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_003230538.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA
YP_003230542.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_003230543.1	YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function
YP_003230548.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_003230549.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_003230550.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_003230551.1	Era; Escherichia coli Ras; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_003230552.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_003230553.1	catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins
YP_003230554.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_003230555.1	involved in the reduction of the SoxR iron-sulfur cluster
YP_003230556.1	periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP
YP_003230558.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_003230559.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_003230561.1	facilitates an early step in the assembly of the 50S subunit of the ribosome
YP_003230564.1	stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit
YP_003230565.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_003230570.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_003230575.1	responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA
YP_003230576.1	with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline
YP_003230577.1	associated with 30S ribosomal subunit; interferes with translation elongation
YP_003230579.1	catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_003230580.1	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis
YP_003230581.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_003230586.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_003230587.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_003230588.1	Essential for efficient processing of 16S rRNA
YP_003230589.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_003230590.1	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins
YP_003230593.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_003230594.1	catalyzes the phosphorylation of NAD to NADP
YP_003230599.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_003230600.1	Prophage ECO26_P19
YP_003230601.1	Prophage ECO26_P19
YP_003230602.1	Prophage ECO26_P19
YP_003230603.1	Prophage ECO26_P19
YP_003230604.1	Prophage ECO26_P19
YP_003230605.1	Prophage ECO26_P19
YP_003230606.1	Prophage ECO26_P19
YP_003230607.1	Prophage ECO26_P19
YP_003230608.1	Prophage ECO26_P19
YP_003230609.1	Prophage ECO26_P19
YP_003230610.1	Prophage ECO26_P19
YP_003230611.1	Prophage ECO26_P19
YP_003230612.1	Prophage ECO26_P19
YP_003230613.1	Prophage ECO26_P19
YP_003230614.1	Prophage ECO26_P19
YP_003230615.1	Prophage ECO26_P19
YP_003230616.1	Prophage ECO26_P19
YP_003230617.1	Prophage ECO26_P19
YP_003230618.1	Prophage ECO26_P19
YP_003230619.1	Prophage ECO26_P19
YP_003230620.1	Prophage ECO26_P19
YP_003230621.1	Prophage ECO26_P19
YP_003230622.1	Prophage ECO26_P19
YP_003230623.1	Prophage ECO26_P19
YP_003230624.1	Prophage ECO26_P19
YP_003230625.1	Prophage ECO26_P19
YP_003230626.1	Prophage ECO26_P19
YP_003230627.1	Prophage ECO26_P19
YP_003230628.1	Prophage ECO26_P19
YP_003230629.1	Prophage ECO26_P19
YP_003230630.1	Prophage ECO26_P19
YP_003230631.1	Prophage ECO26_P19
YP_003230632.1	Prophage ECO26_P19
YP_003230633.1	Prophage ECO26_P19
YP_003230634.1	Prophage ECO26_P19
YP_003230635.1	Prophage ECO26_P19
YP_003230636.1	Prophage ECO26_P19
YP_003230637.1	Prophage ECO26_P19
YP_003230638.1	Prophage ECO26_P19
YP_003230639.1	Prophage ECO26_P19
YP_003230640.1	Prophage ECO26_P19
YP_003230641.1	Prophage ECO26_P19
YP_003230642.1	Prophage ECO26_P19
YP_003230643.1	Prophage ECO26_P19
YP_003230644.1	Prophage ECO26_P19
YP_003230645.1	Prophage ECO26_P19
YP_003230646.1	Prophage ECO26_P19
YP_003230647.1	Prophage ECO26_P19
YP_003230648.1	Prophage ECO26_P19
YP_003230649.1	Prophage ECO26_P19
YP_003230650.1	Prophage ECO26_P19
YP_003230651.1	Prophage ECO26_P19
YP_003230652.1	Prophage ECO26_P19
YP_003230653.1	Prophage ECO26_P19
YP_003230654.1	Prophage ECO26_P19
YP_003230655.1	Prophage ECO26_P19
YP_003230656.1	Prophage ECO26_P19
YP_003230657.1	Integrative element ECO26_IE05
YP_003230658.1	Integrative element ECO26_IE05; cytoplasmic protein, similar to hypothetical protein [Q8VNQ4], identity 100% in 138 aa overlap
YP_003230659.1	Integrative element ECO26_IE05
YP_003230660.1	Integrative element ECO26_IE05
YP_003230661.1	in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution
YP_003230662.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_003230663.1	catalyzes the formation of succinate from succinate semialdehyde; NADP dependent
YP_003230664.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_003230666.1	regulator of gab gene expression
YP_003230670.1	hydrolase activity
YP_003230676.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_003230677.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_003230678.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_003230679.1	with ProWX is involved in the high-affinity uptake of glycine betaine
YP_003230680.1	with ProVX is involved in the high-affinity uptake of glycine betaine
YP_003230681.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_003230685.1	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB
YP_003230688.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_003230689.1	involved in the first step of glutathione biosynthesis
YP_003230691.1	YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent
YP_003230692.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_003230693.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003230694.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_003230695.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_003230697.1	membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan
YP_003230700.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003230701.1	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate
YP_003230702.1	regulator for glucitol utilization
YP_003230703.1	regulates genes involved in glucitol utilization
YP_003230704.1	catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate
YP_003230705.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_003230706.1	detoxifies nitric oxide using NADH
YP_003230707.1	catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase
YP_003230708.1	[NiFe] hydrogenases maturation protein
YP_003230709.1	involved in electron transport from formate to hydrogen
YP_003230711.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003230715.1	involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE
YP_003230716.1	required for maturation of hydrogenase 3
YP_003230718.1	electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate
YP_003230721.1	catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3)
YP_003230723.1	regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon
YP_003230724.1	plays a role in hydrogenase nickel cofactor insertion
YP_003230725.1	GTP hydrolase involved in nickel liganding into hydrogenases
YP_003230726.1	HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase
YP_003230727.1	required for maturation of hydrogenases
YP_003230728.1	hydrogenase 3 maturation protein
YP_003230731.1	This protein performs the mismatch recognition step during the DNA repair process
YP_003230734.1	contains NAD(P)-binding Rossmann-fold domain
YP_003230738.1	member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function
YP_003230742.1	MarR-family
YP_003230743.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_003230744.1	outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus
YP_003230745.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_003230746.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_003230747.1	catalyzes the modification of U13 in tRNA(Glu)
YP_003230748.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_003230749.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_003230750.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_003230752.1	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
YP_003230753.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_003230754.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_003230755.1	catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3
YP_003230764.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_003230765.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_003230766.1	catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity
YP_003230767.1	PTPS
YP_003230768.1	contains FAD/NAD(P)-binding domain
YP_003230780.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_003230781.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_003230782.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_003230783.1	MazF; endoribonuclease; toxin of the ChpA-ChpR toxin-antitoxin system
YP_003230784.1	part of the MazF-MazE toxin-antitoxin system; conteracts MazF
YP_003230785.1	(p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP
YP_003230786.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_003230787.1	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system
YP_003230791.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_003230792.1	catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp
YP_003230794.1	SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function
YP_003230795.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_003230799.1	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups
YP_003230801.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_003230803.1	catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose
YP_003230806.1	regulates expression of genes involved in L-fucose utilization
YP_003230807.1	2'-O-ribose methyltransferase specific for nucleotide C2498 in bacteria
YP_003230809.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_003230814.1	membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_003230821.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_003230822.1	helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_003230823.1	helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_003230825.1	catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination
YP_003230830.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_003230831.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_003230832.1	member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr
YP_003230833.1	hydrolyzes diadenosine polyphosphate
YP_003230835.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_003230838.1	complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH
YP_003230840.1	Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1
YP_003230841.1	controls transcription of galETKM
YP_003230842.1	catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding
YP_003230843.1	activates the transcription of the lysA gene encoding diaminopimelate decarboxylase
YP_003230846.1	catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate
YP_003230847.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_003230848.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_003230850.1	contains bipartite regulator domain
YP_003230868.1	part of a type III secretory system probably involved in invasion into eukaryotic cells
YP_003230870.1	Integrative element ECO26_IE06
YP_003230871.1	Integrative element ECO26_IE06
YP_003230872.1	Integrative element ECO26_IE06; predicted protein Orf3 in insertion sequence ISCro1
YP_003230873.1	Integrative element ECO26_IE06; predicted protein Orf2 in insertion sequence ISCro1
YP_003230874.1	Integrative element ECO26_IE06; predicted protein Orf1 of insertion sequence ISCro1
YP_003230875.1	Integrative element ECO26_IE06
YP_003230876.1	Integrative element ECO26_IE06
YP_003230877.1	Integrative element ECO26_IE06
YP_003230878.1	Integrative element ECO26_IE06
YP_003230880.1	molybdenum cofactor-binding protein; participates in purine salvage
YP_003230881.1	FAD-binding subunit; with XdhA and XdhC participates in purine salvage
YP_003230882.1	iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage
YP_003230885.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_003230886.1	Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases
YP_003230887.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_003230888.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_003230889.1	contains NAD(P)-binding Rossman fold domain
YP_003230892.1	with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase
YP_003230893.1	in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS
YP_003230894.1	with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain
YP_003230895.1	with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration
YP_003230897.1	Catalyzes the deamination of guanine
YP_003230900.1	unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)
YP_003230903.1	catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate
YP_003230904.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_003230905.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_003230906.1	5'-3' single-stranded-DNA-specific exonuclease
YP_003230907.1	DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity
YP_003230908.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_003230909.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic
YP_003230912.1	physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator
YP_003230916.1	contains NAD(P)-binding Rossmann-fold domain
YP_003230917.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_003230918.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_003230919.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_003230920.1	contains FAD/NAD(P)-binding domain
YP_003230921.1	Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone
YP_003230922.1	exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide
YP_003230923.1	the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown
YP_003230924.1	localizes to the cytokinetic ring
YP_003230925.1	ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function
YP_003230926.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_003230927.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_003230928.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_003230929.1	MDM; functions in conversion of succinate to propionate
YP_003230930.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_003230931.1	catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA
YP_003230935.1	Involved in the export of arginine
YP_003230936.1	participates in the regulation of osmotic pressure changes within the cel
YP_003230937.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_003230938.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_003230939.1	NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate
YP_003230950.1	TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein
YP_003230951.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_003230960.1	catalyzes the formation of putrescine from agmatine
YP_003230962.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_003230966.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_003230970.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_003230971.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_003230973.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_003230978.1	HAM1; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_003230979.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003230984.1	catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis
YP_003230987.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_003230989.1	protects iron-sulfur proteins against oxidative damage
YP_003230990.1	Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_003230994.1	Integrative element ECO26_IE07
YP_003230995.1	IrgAue adhesin (Iha); TonB-dependent; acts as a specific receptor of enterobactin; fur-regulated; urovirulence factor
YP_003230996.1	Integrative element ECO26_IE07
YP_003230997.1	Integrative element ECO26_IE07
YP_003230999.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_003231004.1	GntR family, GeneHacker: Min.length=50, Min.score =15, overlap=0.4
YP_003231006.1	activates fatty acids by binding to coenzyme A
YP_003231015.1	contains nucleoside triphosphate hydrolase domain
YP_003231016.1	contains nucleoside triphosphate hydrolase domain
YP_003231017.1	contains nucleoside triphosphate hydrolase domain
YP_003231019.1	catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction
YP_003231020.1	YghU; B2989; one of eight  glutathione transferase proteins from E. coli
YP_003231022.1	plays a role in hydrogenase nickel cofactor insertion
YP_003231024.1	protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC)
YP_003231025.1	involved in hydrogen uptake
YP_003231026.1	HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits
YP_003231027.1	Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2
YP_003231028.1	involved in hydrogen uptake
YP_003231033.1	contains NAD(P)-binding Rossmann-fold domain
YP_003231034.1	membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell
YP_003231035.1	membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell
YP_003231036.1	catalyzes the formation of L-homocysteine from cystathionine
YP_003231040.1	methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate
YP_003231046.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_003231049.1	response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes
YP_003231054.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_003231055.1	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate
YP_003231058.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_003231059.1	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell
YP_003231063.1	seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine
YP_003231066.1	DHBP synthase; functions during riboflavin biosynthesis
YP_003231071.1	Involved in glycogen synthesis. May be involved in glycogen priming
YP_003231073.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_003231074.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_003231076.1	contains SH3 domain
YP_003231077.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_003231078.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_003231079.1	catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin
YP_003231080.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_003231081.1	activates expression of genes required for L-tartrate-dependent anaerobic growth on glycerol
YP_003231082.1	Involved in the tartrate degradation pathway
YP_003231083.1	Involved in the tartrate degradation pathway
YP_003231085.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_003231086.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_003231087.1	synthesizes RNA primers at the replication forks
YP_003231088.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_003231093.1	catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate
YP_003231096.1	in Escherichia coli this is the second beta-galactosidase system
YP_003231097.1	in Escherichia coli this is the second beta-galactosidase system
YP_003231106.1	involved in the import of serine and threonine coupled with the import of sodium
YP_003231109.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_003231115.1	regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.
YP_003231134.1	catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism
YP_003231135.1	involved in the import of threonine and serine in combination with the import of a proton
YP_003231136.1	catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic
YP_003231137.1	regulates the tdcABCDEFG operon which is involved in amino acid degradation
YP_003231138.1	participates in controlling the expression of several structural genes for the enzyme threonine dehydratase; TdcR activates the tdcABCDEFG operon
YP_003231142.1	catalyzes the reduction of tartronate semialdehyde to glycerate
YP_003231143.1	cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate
YP_003231146.1	SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation
YP_003231148.1	transcriptional repressor for the agaZVWA and agaSYBCDI operons
YP_003231150.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport
YP_003231156.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_003231157.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport
YP_003231158.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport
YP_003231159.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport
YP_003231168.1	Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein
YP_003231175.1	contains acyl-CoA N-acyltransferase domain
YP_003231177.1	collagenase-like
YP_003231181.1	tryptophan transporter of high affinity
YP_003231182.1	participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division
YP_003231183.1	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing
YP_003231185.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_003231186.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_003231187.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_003231188.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_003231189.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_003231190.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_003231191.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_003231194.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_003231195.1	catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate
YP_003231196.1	inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins
YP_003231197.1	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit
YP_003231198.1	RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability
YP_003231199.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003231200.1	penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_003231201.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_003231203.1	involved in the peptidyltransferase reaction during translation
YP_003231206.1	activator of maltose metabolism genes
YP_003231207.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_003231212.1	membrane component of ABC superfamily
YP_003231213.1	ATP-binding subunit of a  ABC toluene efflux transporter
YP_003231214.1	YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers
YP_003231216.1	forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis
YP_003231217.1	involved in LPS transport
YP_003231218.1	LptA; periplasmic binding protein part of a  ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system
YP_003231219.1	ATP-binding component of ABC superfamily
YP_003231220.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_003231221.1	YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing
YP_003231223.1	contains nucleoside triphosphate hydrolase domain
YP_003231224.1	Npr
YP_003231226.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_003231228.1	sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA
YP_003231230.1	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_003231231.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_003231233.1	catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein
YP_003231234.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_003231236.1	catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid
YP_003231237.1	Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization
YP_003231238.1	YhcL; uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters; probable role in transport of carboxylates across the inner membrane from the periplasm; its encoding gene is not essential for growth and is probably cryptic
YP_003231239.1	stringent starvation protein B (SspB)
YP_003231240.1	transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation
YP_003231241.1	forms a direct contact with the tRNA during translation
YP_003231242.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_003231243.1	contains nucleoside triphosphate hydrolase domain
YP_003231247.1	oxidizes malate to oxaloacetate
YP_003231248.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_003231251.1	with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_003231252.1	with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_003231253.1	membrane protein AaeX; the gene is a member of the aaeXAB operon
YP_003231255.1	responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA
YP_003231256.1	predicted transporter
YP_003231257.1	involved in the processing of the 5'end of 16S rRNA
YP_003231258.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_003231259.1	part of cell wall structural complex MreBCD; transmembrane component
YP_003231260.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_003231261.1	functions in MreBCD complex in some organisms
YP_003231262.1	regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules
YP_003231265.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_003231266.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_003231272.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_003231274.1	ribokinase family
YP_003231276.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_003231277.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_003231279.1	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription
YP_003231286.1	periplasmic-binding component of ABC superfamily
YP_003231289.1	membrane component of ABC superfamily
YP_003231290.1	ATP-binding component of ABC superfamily
YP_003231293.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_003231294.1	RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA
YP_003231298.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_003231299.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_003231300.1	catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase
YP_003231301.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_003231302.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_003231304.1	mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators
YP_003231306.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_003231307.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_003231308.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_003231309.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_003231310.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_003231311.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_003231312.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_003231313.1	late assembly protein
YP_003231314.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_003231315.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_003231316.1	binds 5S rRNA along with protein L5 and L25
YP_003231317.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_003231318.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_003231319.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_003231320.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_003231321.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_003231322.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_003231323.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_003231324.1	one of the stabilizing components for the large ribosomal subunit
YP_003231325.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_003231326.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_003231327.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_003231328.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_003231329.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_003231330.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_003231331.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_003231332.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_003231333.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_003231335.1	iron storage protein
YP_003231337.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_003231338.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_003231339.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_003231340.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_003231341.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_003231342.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_003231343.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_003231345.1	rotamase
YP_003231347.1	rotamase
YP_003231349.1	involved in potassium efflux
YP_003231350.1	required for KefB activity
YP_003231356.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_003231358.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_003231359.1	aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity
YP_003231360.1	cell division protein
YP_003231362.1	rotamase A
YP_003231365.1	involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations
YP_003231366.1	member of the FNT family of formate and nitrite transporters
YP_003231367.1	multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin
YP_003231369.1	inner membrane protein possibly involved in fructoselysine transport; member of the flr operon
YP_003231370.1	catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine
YP_003231371.1	YhfOP; YhfP; YhfO; FrlC; catalyzes the interconversion of fructoselysine and psicoselysine
YP_003231373.1	may act as a transcriptional regulator of a fructoselysine-induced operon containing the yhfM, yhfN, yhfO, yhfP, yhfQ, and yhfR genes
YP_003231377.1	phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE)
YP_003231382.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003231383.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_003231384.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_003231387.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_003231388.1	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_003231389.1	outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa
YP_003231394.1	bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits
YP_003231395.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_003231399.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_003231401.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_003231402.1	membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
YP_003231403.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_003231404.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003231407.1	cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake
YP_003231410.1	Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis
YP_003231411.1	involved in high-affinity gluconate transport
YP_003231412.1	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source
YP_003231414.1	amylomaltase; acts to release glucose from maltodextrins
YP_003231416.1	Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides
YP_003231417.1	catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester
YP_003231420.1	represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism
YP_003231421.1	protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity
YP_003231422.1	belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine
YP_003231423.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_003231424.1	containing 4 transmembrane domains
YP_003231429.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_003231430.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_003231431.1	catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen
YP_003231432.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_003231433.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_003231434.1	YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP)
YP_003231436.1	thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate
YP_003231439.1	contains NAD(P)-binding Rossmann-fold domain
YP_003231440.1	YhhY; regulated by the fur regulator; unknown function
YP_003231444.1	periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides
YP_003231446.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_003231447.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_003231448.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_003231449.1	with UgpEC is involved in the uptake of glycerol-3-phosphate
YP_003231450.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_003231451.1	with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_003231452.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_003231453.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_003231454.1	LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter
YP_003231455.1	periplasmic-binding component of ABC superfamily
YP_003231457.1	ABC superfamily
YP_003231458.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_003231459.1	ABC transporter, membrane protein
YP_003231460.1	ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions
YP_003231461.1	signal recognition protein receptor; functions in the targeting and insertion of membrane proteins
YP_003231462.1	catalyzes the methylation of 16S rRNA at position G966
YP_003231466.1	P-type ATPase involved in the export of lead, cadmium, zinc and mercury
YP_003231467.1	TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs
YP_003231473.1	periplasmic-binding component of ABC superfamily
YP_003231474.1	with NikACDE is involved in nickel transport into the cell
YP_003231475.1	with NikABDE is involved in nickel transport into the cell
YP_003231476.1	with NikABCE is involved in nickel transport into the cell
YP_003231477.1	with NikABCD is involved with nickel transport into the cell
YP_003231478.1	Inhibits transcription at high concentrations of nickel
YP_003231479.1	RhsB
YP_003231481.1	membrane component of ABC superfamily
YP_003231487.1	contains FAD/NAD(P)-binding domain
YP_003231489.1	ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
YP_003231491.1	member of the POT family of peptide transporters; probable proton-dependent peptide transporter function
YP_003231492.1	predicted SAM-dependent methyltransferase
YP_003231495.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_003231496.1	function unknown
YP_003231497.1	regulates the expression of of the arsRBC involved in resistance to arsenic
YP_003231503.1	inner membrane protein involved in cell density-dependent acid resistance; part of the acid fitness island (AFI) of E. coli
YP_003231505.1	inactive form
YP_003231508.1	with MdtF and tolC is involved in resistance to rhodamine 6G, erythromycin, doxorubicin and other compounds
YP_003231511.1	regulates genes in response to acid and/or during stationary phase
YP_003231514.1	cytoplasmic; catalyzes the hydrolysis of trehalose to glucose
YP_003231520.1	in Escherichia coli this protein is involved in flagellar function
YP_003231523.1	involved in the transport of C4-dicarboxylates across the membrane
YP_003231524.1	HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a  phosphodiesterase protein from E. coli
YP_003231525.1	cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA
YP_003231526.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_003231527.1	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_003231528.1	polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis
YP_003231529.1	chromosome partitioning ATPase
YP_003231539.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_003231540.1	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF
YP_003231541.1	membrane component of ABC superfamily
YP_003231542.1	transports peptides consisting of two or three amino acids
YP_003231543.1	periplasmic-binding component of ABC superfamily
YP_003231548.1	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor
YP_003231549.1	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_003231550.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_003231551.1	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
YP_003231552.1	member of the NlpC/P60 superfamily of peptidases
YP_003231553.1	RhsH
YP_003231554.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_003231555.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_003231556.1	negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins
YP_003231558.1	heat shock protein involved in degradation of misfolded proteins
YP_003231559.1	heat shock protein involved in degradation of misfolded proteins
YP_003231560.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_003231561.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_003231564.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_003231565.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_003231567.1	with UspC and Usp E is involved in resistance to UV radiation
YP_003231571.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_003231573.1	periplasmic-binding component of ABC superfamily
YP_003231574.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_003231575.1	member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers
YP_003231576.1	repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates
YP_003231577.1	response regulator in two-component regulatory system with CpxA; part of the envelope stress response system
YP_003231578.1	part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors
YP_003231580.1	transports degraded pectin products into the bacterial cell
YP_003231581.1	SodA; manganese binding; only present under aerobic conditions; destroys free radicals
YP_003231582.1	transports L-rhamnose and L-lyxose into the cell
YP_003231583.1	activates the expression of rhaRS in response to L-rhamnose
YP_003231584.1	catalyzes the ATP-dependent phosphorylation of rhamnulose
YP_003231585.1	catalyzes the formation of L-rhamnulose from L-rhamnose
YP_003231589.1	with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars; possibly responsible for the sugar specificity of the system
YP_003231591.1	with FrvABR is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system which may be involved in the transport and phosphorylation of sugars
YP_003231592.1	repressor of the frv operon, involved in phosphoenolpyruvate:sugar phosphotransferase system
YP_003231594.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_003231595.1	codon on position 196 is selenocysteine opal codon
YP_003231597.1	cytochrome b556(FDO) component; heme containing
YP_003231598.1	required for the formation of active formate dehydrogenase
YP_003231606.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_003231607.1	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease
YP_003231611.1	contains NAD(P)-binding Rossmann-fold domain
YP_003231618.1	porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown
YP_003231623.1	forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme
YP_003231624.1	sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation
YP_003231625.1	response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54
YP_003231626.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003231628.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_003231629.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_003231633.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_003231635.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_003231636.1	in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway
YP_003231637.1	catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX
YP_003231640.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_003231641.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_003231642.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_003231643.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin
YP_003231644.1	catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol
YP_003231646.1	magnesium dependent; not involved in the Sec-independent protein export system
YP_003231647.1	with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane
YP_003231648.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_003231649.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_003231650.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_003231652.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_003231653.1	YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner
YP_003231654.1	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway
YP_003231656.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_003231659.1	purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium
YP_003231660.1	lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates
YP_003231663.1	functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway
YP_003231664.1	catalyzes the hydrolysis of phosphatidylcholine
YP_003231670.1	responsible for the influx of magnesium ions
YP_003231672.1	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
YP_003231673.1	YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function
YP_003231674.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_003231676.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_003231681.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_003231682.1	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_003231683.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_003231684.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_003231688.1	uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function
YP_003231690.1	enterobacterial common antigen polymerase
YP_003231691.1	catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis
YP_003231693.1	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis
YP_003231697.1	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid
YP_003231699.1	Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
YP_003231702.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_003231705.1	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
YP_003231706.1	catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation
YP_003231707.1	single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication
YP_003231709.1	rotamase C
YP_003231710.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_003231711.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_003231712.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_003231713.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_003231714.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_003231716.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_003231718.1	among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function
YP_003231720.1	Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon
YP_003231723.1	DNA-binding transcriptional repressor of ribose metabolism
YP_003231724.1	catalyzes the formation of D-ribose 5-phosphate from ribose
YP_003231725.1	periplasmic substrate-binding component of the ATP-dependent ribose transport system
YP_003231726.1	functions to transport ribose at high affinity; forms a complex with RbsA2C2B
YP_003231727.1	with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain
YP_003231728.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_003231729.1	Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH
YP_003231730.1	interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase
YP_003231731.1	contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA
YP_003231732.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_003231733.1	transcriptional repressor of asnA which codes for aspartate-ammonia ligase
YP_003231734.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_003231735.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_003231736.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_003231737.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation
YP_003231738.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_003231739.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_003231740.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_003231741.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_003231742.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_003231743.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_003231744.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_003231745.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_003231746.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_003231747.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_003231752.1	periplasmic-binding component PstS of ABC superfamily
YP_003231753.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_003231754.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_003231755.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_003231756.1	regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon
YP_003231757.1	positive regulator of the beta-glucoside operon; transcriptional antiterminator
YP_003231758.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_003231760.1	receptor protein
YP_003231764.1	might be involved in hypersensitivity to nitrofurzone
YP_003231765.1	YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily
YP_003231767.1	flavoprotein
YP_003231769.1	Involved in anaerobic NO protection
YP_003231770.1	Confers resistance to chloramphenicol
YP_003231771.1	tryptophan transporter of low affinity
YP_003231772.1	tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan
YP_003231774.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_003231775.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_003231776.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_003231777.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_003231778.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_003231779.1	binds the polymerase to DNA and acts as a sliding clamp
YP_003231780.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_003231781.1	negatively supercoils closed circular double-stranded DNA
YP_003231783.1	YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins
YP_003231787.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_003231789.1	FAD/NAD(P)-binding domain
YP_003231792.1	with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress
YP_003231793.1	16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent
YP_003231799.1	uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function
YP_003231805.1	multidrug efflux protein involved in adaptation to low energy shock
YP_003231809.1	with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit
YP_003231810.1	response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter
YP_003231811.1	Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph
YP_003231812.1	membrane protein regulates uhpT expression
YP_003231813.1	cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate
YP_003231814.1	catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type
YP_003231817.1	experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS
YP_003231822.1	Prophage ECO26_P20
YP_003231823.1	Prophage ECO26_P20
YP_003231824.1	Prophage ECO26_P20; predicted protein Orf1 in insertion sequence ISCro1
YP_003231825.1	Prophage ECO26_P20; predicted protein Orf2 in insertion sequence ISCro1
YP_003231826.1	Prophage ECO26_P20; predicted protein Orf3 in insertion sequence ISCro1
YP_003231827.1	Prophage ECO26_P20
YP_003231828.1	Prophage ECO26_P20
YP_003231829.1	Prophage ECO26_P20
YP_003231830.1	Prophage ECO26_P20
YP_003231831.1	Prophage ECO26_P20
YP_003231832.1	Prophage ECO26_P20
YP_003231833.1	Prophage ECO26_P20
YP_003231834.1	Prophage ECO26_P20
YP_003231835.1	Prophage ECO26_P20
YP_003231836.1	Prophage ECO26_P20
YP_003231837.1	Prophage ECO26_P20
YP_003231838.1	may be involved in the transport of galactosides-pentoses-hexuronides
YP_003231839.1	catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides
YP_003231844.1	catalyzes branch migration in Holliday junction intermediates
YP_003231845.1	specifically modifies tRNA at position G18
YP_003231847.1	promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_003231848.1	Essential for recycling GMP and indirectly, cGMP
YP_003231849.1	this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+
YP_003231853.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_003231854.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_003231855.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_003231856.1	catalyzes the formation of dUMP from dUTP
YP_003231857.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_003231858.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_003231859.1	required for 70S ribosome assembly
YP_003231860.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_003231861.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_003231862.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_003231863.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_003231873.1	catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core
YP_003231874.1	catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose
YP_003231876.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_003231877.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_003231881.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_003231884.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_003231885.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_003231886.1	catalyzes the O-acetylation of serine
YP_003231887.1	member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates
YP_003231888.1	flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration
YP_003231889.1	represses the lctPRD operon
YP_003231895.1	Acts as a repressor of the mtlAD operon
YP_003231902.1	RhsA
YP_003231904.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_003231912.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_003231913.1	L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate
YP_003231914.1	catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate
YP_003231918.1	membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO
YP_003231920.1	NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate
YP_003231923.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_003231924.1	periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds
YP_003231927.1	membrane component of ABC superfamily XyiH
YP_003231928.1	with XylFH is part of the high affinity xylose ABC transporter
YP_003231929.1	periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity
YP_003231930.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_003231936.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003231937.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003231942.1	glyoxalate reductase; 2-ketoaldonate reductase
YP_003231945.1	contains acyl-CoA N-acyltransferase domain
YP_003231946.1	constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine
YP_003231954.1	catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide
YP_003231956.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_003231957.1	similar to transaldolase from Escherichia coli; many organisms have multiple copies
YP_003231958.1	FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site
YP_003231959.1	FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS
YP_003231960.1	involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein
YP_003231962.1	FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog
YP_003231965.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_003231966.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_003231967.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_003231968.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_003231969.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_003231970.1	Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA
YP_003231971.1	catalyzes the conversion of NADPH to NADH
YP_003231972.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_003231974.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_003231975.1	involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space
YP_003231976.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_003231977.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_003231978.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_003231979.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_003231980.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_003231981.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_003231982.1	Modulates Rho-dependent transcription termination
YP_003231983.1	binds directly to 23S ribosomal RNA
YP_003231984.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_003231985.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_003231986.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_003231987.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_003231988.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_003231990.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_003231991.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_003231992.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_003231993.1	for thiazole moiety biosynthesis
YP_003231994.1	catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate
YP_003231995.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_003231996.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_003231997.1	can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates
YP_003231998.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_003231999.1	Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures
YP_003232001.1	histone-like DNA-binding protein
YP_003232005.1	DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein
YP_003232006.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_003232007.1	involved in de novo purine biosynthesis
YP_003232009.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_003232010.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_003232012.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_003232013.1	regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase
YP_003232014.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_003232016.1	alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family
YP_003232021.1	Converts D-sorbitol-dphosphate to D-fructose-6-phosphate
YP_003232023.1	catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA
YP_003232028.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive
YP_003232029.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_003232035.1	xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter
YP_003232036.1	functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis
YP_003232037.1	with malEFG is involved in import of maltose/maltodextrin
YP_003232038.1	porin involved in the transport of maltose and maltodextrins
YP_003232040.1	catalyzes the formation of 4-hydroxybenzoate from chorismate
YP_003232041.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_003232042.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_003232044.1	Represses a number of genes involved in the response to DNA damage
YP_003232046.1	unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential
YP_003232047.1	Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB
YP_003232051.1	coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia
YP_003232053.1	unwinds double stranded DNA
YP_003232054.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_003232055.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_003232057.1	Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity
YP_003232060.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_003232061.1	binds to single stranded DNA and PriA helcase facilitate replication restart
YP_003232063.1	EAL domain containing protein
YP_003232064.1	regulates genes involved in response to oxidative stress
YP_003232068.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_003232069.1	involved in acetate transport
YP_003232070.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_003232071.1	catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552
YP_003232072.1	part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia
YP_003232075.1	with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552
YP_003232076.1	for insertion of heme into c552; NrfEFG subunit
YP_003232077.1	for insertion of heme into c552; NrfEFG subunit
YP_003232078.1	carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system
YP_003232080.1	codon on position 140 is selenocysteine opal codon
YP_003232081.1	part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family
YP_003232082.1	possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
YP_003232083.1	with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride
YP_003232088.1	required for the use of phosphonates and phosphite as phosphorus sources
YP_003232089.1	PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role
YP_003232098.1	may be involved in phosphonate uptake and biodegradation
YP_003232099.1	membrane component of ABC superfamily
YP_003232100.1	periplasmic binding component of ABC superfamily
YP_003232101.1	ATP-binding component of ABC superfamily
YP_003232104.1	contains nucleoside triphosphate hydrolase domain
YP_003232108.1	response regulator in two-component regulatory system with BasS
YP_003232109.1	with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division
YP_003232117.1	fumarase B
YP_003232118.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters
YP_003232119.1	response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration
YP_003232120.1	C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration
YP_003232122.1	contains acyl-CoA N-acyltransferase domain
YP_003232124.1	class II; inducible; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; induced by high temperature, anaerobiosis, and low pH; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_003232127.1	antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein
YP_003232128.1	regulates the cadBA operon
YP_003232129.1	IS2 OrfA; forms an overlapping reading frame with orfB; may form a fusion protein OrfAB due to ribosomal frameshifting; both OrfA and OrfAB bind terminal inverted repeats
YP_003232130.1	Integrative element ECO26_IE08
YP_003232131.1	Integrative element ECO26_IE08
YP_003232132.1	Integrative element ECO26_IE08
YP_003232133.1	Integrative element ECO26_IE08
YP_003232134.1	Integrative element ECO26_IE08
YP_003232135.1	Integrative element ECO26_IE08
YP_003232136.1	Integrative element ECO26_IE08
YP_003232137.1	Integrative element ECO26_IE08
YP_003232138.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_003232139.1	Integrative element ECO26_IE08
YP_003232140.1	Integrative element ECO26_IE08
YP_003232141.1	member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli
YP_003232142.1	Integrative element ECO26_IE08
YP_003232143.1	Integrative element ECO26_IE08
YP_003232144.1	Integrative element ECO26_IE08
YP_003232145.1	Integrative element ECO26_IE08
YP_003232146.1	Integrative element ECO26_IE08
YP_003232147.1	Integrative element ECO26_IE08
YP_003232148.1	Integrative element ECO26_IE08
YP_003232149.1	Integrative element ECO26_IE08
YP_003232150.1	Integrative element ECO26_IE08
YP_003232151.1	Integrative element ECO26_IE08
YP_003232152.1	Integrative element ECO26_IE08
YP_003232153.1	Integrative element ECO26_IE08
YP_003232154.1	Integrative element ECO26_IE08
YP_003232155.1	Integrative element ECO26_IE08
YP_003232156.1	Integrative element ECO26_IE08
YP_003232157.1	Integrative element ECO26_IE08
YP_003232158.1	Integrative element ECO26_IE08
YP_003232159.1	Integrative element ECO26_IE08
YP_003232160.1	Integrative element ECO26_IE08
YP_003232161.1	Integrative element ECO26_IE08
YP_003232162.1	Integrative element ECO26_IE08
YP_003232163.1	Integrative element ECO26_IE08
YP_003232164.1	Integrative element ECO26_IE08
YP_003232165.1	Integrative element ECO26_IE08
YP_003232166.1	Integrative element ECO26_IE08
YP_003232167.1	Integrative element ECO26_IE08
YP_003232168.1	Integrative element ECO26_IE08
YP_003232169.1	Integrative element ECO26_IE08
YP_003232170.1	Integrative element ECO26_IE08
YP_003232171.1	Integrative element ECO26_IE08
YP_003232172.1	Integrative element ECO26_IE08
YP_003232173.1	Integrative element ECO26_IE08
YP_003232174.1	Integrative element ECO26_IE08
YP_003232175.1	Integrative element ECO26_IE08
YP_003232176.1	Integrative element ECO26_IE08
YP_003232177.1	Integrative element ECO26_IE08
YP_003232178.1	Integrative element ECO26_IE08
YP_003232180.1	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm
YP_003232181.1	copper binding protein required for copper tolerance; involved in resistance toward heavy metals
YP_003232182.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_003232183.1	catalyzes the formation of fumarate from aspartate
YP_003232184.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_003232185.1	uncharacterized member of the APC superfamily of amino acid transporters; unknown function
YP_003232186.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_003232187.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_003232192.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_003232193.1	acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex
YP_003232195.1	member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations
YP_003232196.1	lipocalin; globomycin-sensitive outer membrane lipoprotein
YP_003232198.1	in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane
YP_003232199.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003232200.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003232201.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003232202.1	lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003232207.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_003232208.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_003232209.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_003232212.1	possibly involved in cell wall synthesis
YP_003232214.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_003232215.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_003232216.1	Stimulates the elongation of poly(A) tails
YP_003232217.1	involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein
YP_003232218.1	with HflC inhibits proteolysis of lambda cII protein by FtsH
YP_003232219.1	with HflK inhibits proteolysis of lambda cII protein by FtsH
YP_003232221.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_003232222.1	negatively regulates the transcription of genes upregulated by nitrosative stress
YP_003232223.1	3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs
YP_003232224.1	Specifically methylates the ribose of guanosine 2251 in 23S rRNA
YP_003232231.1	catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA
YP_003232233.1	in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility
YP_003232234.1	YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo
YP_003232235.1	negative regulator of ulaG and ulaABCDEF
YP_003232237.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_003232238.1	involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake
YP_003232239.1	catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization
YP_003232240.1	UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway
YP_003232241.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_003232243.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_003232244.1	binds single-stranded DNA at the primosome assembly site
YP_003232245.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_003232246.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_003232251.1	FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
YP_003232252.1	involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine
YP_003232255.1	Involved in anaerobic NO protection and iron metabolism
YP_003232259.1	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_003232260.1	catalyzes the formation of AMP from adenosine-3',5'-bisphosphate
YP_003232264.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_003232268.1	part of the toxin-antitoxin ChpB-ChpS system
YP_003232269.1	toxin of the ChpB-ChpS toxin-antitoxin system
YP_003232270.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_003232271.1	periplasmic-binding component of ABC superfamily
YP_003232272.1	ATP-binding component of ABC superfamily
YP_003232273.1	membrane component of ABC superfamily
YP_003232274.1	membrane component of a  sugar ABC transporter system
YP_003232275.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_003232278.1	protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD
YP_003232279.1	predicted protein Orf3 in insertion sequence ISEc22
YP_003232280.1	predicted protein Orf2 in insertion sequence ISEc22
YP_003232281.1	predicted protein Orf1 in insertion sequence ISEc22
YP_003232283.1	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions
YP_003232284.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_003232286.1	regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon
YP_003232287.1	P-type ATPase involved in magnesium influx
YP_003232290.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_003232291.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_003232294.1	contains NAD(P)-binding Rossmann-fold domain
YP_003232298.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.
YP_003232301.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_003232302.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_003232303.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_003232304.1	required for the transport of LPS from the periplasmic face of the inner membrane to the outer membrane
YP_003232305.1	required for the transport of LPS from the periplasmic face of the inner membrane to the outer membrane
YP_003232308.1	Prophage ECO26_P21
YP_003232309.1	Prophage ECO26_P21
YP_003232310.1	Prophage ECO26_P21
YP_003232311.1	Prophage ECO26_P21; predicted protein Orf1 in insertion sequence ISCro1
YP_003232312.1	Prophage ECO26_P21; predicted protein Orf2 in insertion sequence ISCro1
YP_003232313.1	Prophage ECO26_P21; predicted protein Orf3 in insertion sequence ISCro1
YP_003232314.1	Prophage ECO26_P21
YP_003232315.1	Prophage ECO26_P21
YP_003232316.1	Prophage ECO26_P21
YP_003232317.1	Prophage ECO26_P21
YP_003232318.1	Prophage ECO26_P21
YP_003232319.1	Prophage ECO26_P21
YP_003232320.1	Prophage ECO26_P21
YP_003232321.1	Prophage ECO26_P21
YP_003232322.1	Integrative element ECO26_IE09
YP_003232323.1	Integrative element ECO26_IE09
YP_003232324.1	Integrative element ECO26_IE09
YP_003232325.1	Integrative element ECO26_IE09
YP_003232326.1	Part of the FecBCDE citrate-dependent iron (III) transport system
YP_003232327.1	Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.
YP_003232328.1	part of the FecBCDE citrate-dependent iron (III) transport system
YP_003232329.1	part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+)
YP_003232330.1	Integrative element ECO26_IE09
YP_003232331.1	with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon
YP_003232332.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport
YP_003232333.1	Integrative element ECO26_IE09
YP_003232334.1	Integrative element ECO26_IE09
YP_003232335.1	Integrative element ECO26_IE09
YP_003232336.1	Integrative element ECO26_IE09; predicted protein Orf2 in insertion sequence ISEc8
YP_003232337.1	Integrative element ECO26_IE09; predicted protein Orf1 in insertion sequence ISEc8
YP_003232338.1	Integrative element ECO26_IE09
YP_003232339.1	Integrative element ECO26_IE09
YP_003232340.1	Integrative element ECO26_IE09
YP_003232341.1	Integrative element ECO26_IE09; predicted protein Orf3 in insertion sequence ISCro1
YP_003232342.1	Integrative element ECO26_IE09; predicted protein Orf2 in insertion sequence ISCro1
YP_003232343.1	Integrative element ECO26_IE09; predicted protein Orf1 in insertion sequence ISCro1
YP_003232344.1	Integrative element ECO26_IE09
YP_003232345.1	Integrative element ECO26_IE09
YP_003232346.1	Integrative element ECO26_IE09
YP_003232347.1	Integrative element ECO26_IE09; predicted protein Orf1 in insertion sequence ISEc22
YP_003232348.1	Integrative element ECO26_IE09; predicted protein Orf2 in insertion sequence ISEc22
YP_003232349.1	Integrative element ECO26_IE09; predicted protein Orf3 in insertion sequence ISEc22
YP_003232350.1	Integrative element ECO26_IE09
YP_003232351.1	Integrative element ECO26_IE09
YP_003232352.1	Integrative element ECO26_IE09
YP_003232353.1	Integrative element ECO26_IE09
YP_003232354.1	Integrative element ECO26_IE09
YP_003232355.1	Integrative element ECO26_IE09
YP_003232356.1	Integrative element ECO26_IE09
YP_003232357.1	Integrative element ECO26_IE09
YP_003232358.1	Integrative element ECO26_IE09
YP_003232359.1	Integrative element ECO26_IE09
YP_003232360.1	Integrative element ECO26_IE09
YP_003232361.1	Integrative element ECO26_IE09
YP_003232362.1	Integrative element ECO26_IE09
YP_003232363.1	Integrative element ECO26_IE09
YP_003232364.1	Integrative element ECO26_IE09
YP_003232371.1	inversion of on/off regulator of fimA
YP_003232372.1	inversion of on/off regulator of fimA
YP_003232374.1	involved in type 1 pilus biosynthesis
YP_003232376.1	type 1 fimbrial synthesis
YP_003232380.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_003232382.1	regulates the expression of uxuBA
YP_003232384.1	inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS
YP_003232389.1	in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown
YP_003232399.1	involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response
YP_003232405.1	G3E family
YP_003232408.1	component of the 4-HPA3-monooxygenase
YP_003232426.1	catalyzes the transfer of phosphoglycerol to the glucan backbone
YP_003232428.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_003232429.1	This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'
YP_003232433.1	regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin
YP_003232434.1	involved in ferric hydroximate transport
YP_003232436.1	16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit
YP_003232437.1	with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_003232438.1	alanine acetyltransferase that specifically acetylates ribosomal protein S18
YP_003232439.1	manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily
YP_003232440.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_003232447.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_003232448.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_003232449.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_003232451.1	Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins
YP_003232453.1	catalyzes the formation of serine from O-phosphoserine
YP_003232454.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_003232455.1	catalyzes the formation of NAD(+) from nicotinamide ribonucleotide
YP_003232456.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_003232457.1	catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan
YP_003232458.1	When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription
YP_003232459.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_003232460.1	catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate
YP_003232463.1	response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation
YP_003232464.1	part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation
YP_003232468.1	member of the SPOUT superfamily of methyltransferases
YP_003232469.1	RepA
YP_003232470.1	RepA4
YP_003232473.1	Mok; similar to F leading maintenance protein C
YP_003232495.1	PsiA
YP_003232520.1	similar to VirB4
YP_003232527.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_003232529.1	type IV secretion system pilus assembly protein; similar to F plasmid TraF
YP_003232540.1	type IV secretion system coupling protein; similar to F plasmid TraD
YP_003232541.1	cleaves origin of transfer and unwinds; oriT relaxase
YP_003232554.1	type II restriction modification system
YP_003232555.1	type II restriction modification system
YP_003237855.1	predicted protein Orf1 in insertion sequence IS683
YP_003237856.1	predicted protein Orf2 in insertion sequence IS683
YP_003237864.1	predicted protein Orf2 in insertion sequence IS683
YP_003237865.1	predicted protein Orf1 in insertion sequence IS683
YP_003237878.1	PsiB
YP_003237879.1	PsiA
YP_003237894.1	predicted protein Orf1 in insertion sequence IS683
YP_003237895.1	predicted protein Orf2 in insertion sequence IS683
YP_003237898.1	predicted protein Orf2 in insertion sequence ISEc8
YP_003237899.1	predicted protein Orf3 in insertion sequence ISEc8
YP_003237900.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_003237905.1	predicted protein, probable partial